BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase
MraW [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547862|gb|ACT57578.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN
Sbjct: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC
Sbjct: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120

Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR
Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK
Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV
Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300

Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG
Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341


>gi|315122411|ref|YP_004062900.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495813|gb|ADR52412.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 348

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 264/342 (77%), Positives = 298/342 (87%), Gaps = 1/342 (0%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           M+S+  K  SS I  T   H+PVLLE+VIALL P+PGK+I+DATFGAGGYS SFC+MGS+
Sbjct: 1   MKSRYLKETSSPIDSTTNGHIPVLLEEVIALLKPSPGKIIVDATFGAGGYSHSFCQMGSS 60

Query: 61  VIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
           VIALDRDP AV+ GQE M+DY K++ SLF+ATFS+L+DYVPD GVDG+VFDLGVSSMQID
Sbjct: 61  VIALDRDPLAVAAGQEIMKDYIKKKISLFEATFSRLKDYVPDNGVDGIVFDLGVSSMQID 120

Query: 120 CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           CGDRGFSFQK GPLDMRMSCSG+SASDVVN A+VKDL RILGILGEEKQASRIAHAIVKR
Sbjct: 121 CGDRGFSFQKHGPLDMRMSCSGVSASDVVNHADVKDLIRILGILGEEKQASRIAHAIVKR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+  PFQTT+DLSSLIQ TVY   NNRIHPATRSFQALRIFVN+EI EL +GL SAEKAL
Sbjct: 181 RKHLPFQTTEDLSSLIQNTVYIRNNNRIHPATRSFQALRIFVNDEIRELEKGLLSAEKAL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG+LIVVSFHSLEDRLVKKFFASRSGKV AVRHMIPS+ HPAVFQS+TKKVV+PTQ D
Sbjct: 241 KDGGVLIVVSFHSLEDRLVKKFFASRSGKVTAVRHMIPSHIHPAVFQSLTKKVVIPTQSD 300

Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           +A NRR+RSAKLR G+RT  + ++D SF +L  LP LSQFRG
Sbjct: 301 IAKNRRARSAKLRVGIRTSAQPMKDLSFEYLAHLPALSQFRG 342


>gi|20808080|ref|NP_623251.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479532|ref|ZP_05092851.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM
           12653]
 gi|21759279|sp|Q8R9F9|RSMH_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|20516663|gb|AAM24855.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034534|gb|EEB75289.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM
           12653]
          Length = 308

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEHLNINPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDEEAILAAKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DYK      +  F  +++ + +   + VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKDYKN-VIYIKDNFKNIKEILRNLGIEKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + K+L R++   GEEK ASRIA  IV+ R+    +TT  L  
Sbjct: 124 MRMDKTSPFSAYDVVNRYSEKELERVIREYGEEKWASRIAKFIVEERKKGDIKTTSQLVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+K +  S +    HPA R+FQA+RI VN E+++L + L    + L+  G + V++FHS
Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQAIRIEVNEELKDLDRALEDMVEVLRGKGRIAVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F            +  +     V + ITKK ++P++E+V  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPGLPCTCGKQPVIKIITKKPILPSKEEVEENPRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|228992654|ref|ZP_04152580.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           pseudomycoides DSM 12442]
 gi|228766986|gb|EEM15623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           pseudomycoides DSM 12442]
          Length = 317

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 7   TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 67  NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT
Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETT 186

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V
Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F   S          I  +      + IT+K ++P+ E++  N R+
Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 307 RSAKLRIAEK 316


>gi|78043538|ref|YP_360897.1| S-adenosyl-methyltransferase MraW [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|88909191|sp|Q3AAD7|RSMH_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77995653|gb|ABB14552.1| S-adenosyl-methyltransferase MraW [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 311

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 175/303 (57%), Gaps = 6/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           HVPVLL + I  LN   G V +DAT G GG+S    K     V+ LD+D  A++   + +
Sbjct: 5   HVPVLLNETIEHLNLKAGGVYVDATLGGGGHSEEILKRADCRVVGLDQDEDALNHAAKRL 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + ++F   ++ F  ++  V       VDGV+ DLGVSS Q+D   +GFSFQ  GPLDM
Sbjct: 65  APFGDRFIPVKSNFRNIRKVVYRLGLDAVDGVLMDLGVSSFQLDNPLKGFSFQHDGPLDM 124

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM      +A+DVVN    K+L RI    GEE+ A +IA AIVKRR+  PF +T +L+  
Sbjct: 125 RMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEE 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I + V        HPA R FQA+RI VN+E+  L +GL  A + LK GG ++V++FHSLE
Sbjct: 185 IIRAVPAKARREKHPAKRVFQAIRIEVNDELSSLEEGLVGAVEVLKPGGRIVVITFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRLVK FF       +  +             + ITKK +VP++E++  NRR+ SAKLRA
Sbjct: 245 DRLVKNFFRREENPCICPKDFPMCVCGKKPRLKVITKKPLVPSEEEIEKNRRAHSAKLRA 304

Query: 314 GMR 316
             +
Sbjct: 305 AEK 307


>gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
 gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
          Length = 341

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +VIA L PA GKVILD TFGAGGY+++    G+NVIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGANVIALDRDPNAIAGGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + +L Q+ FS L  + P+ G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  ANGGRLTLIQSQFSDLARHAPEGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSS 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN+A V DL RI G LGEEKQ  RIA AI KRR   PF+TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKRRAEEPFRTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RH+      PA+F++I K +V  + E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSERSGKAAGSRHLPMVEDKPAIFENIGKPMVAASDEEAEINPRARSAKLRAGLRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S   LP L +L +  G
Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341


>gi|159185048|ref|NP_355067.2| S-adenosyl-methyltransferase MraW [Agrobacterium tumefaciens str.
           C58]
 gi|20138929|sp|P58745|RSMH_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159140322|gb|AAK87852.2| S-adenosyl methionine-dependent methytransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 341

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 180/323 (55%), Positives = 232/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +VIA L PAPGK+ILD TFGAGGY+++    G+NVIALDRDP A++ G+  + 
Sbjct: 19  HIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQGANVIALDRDPTAIAGGEAMVV 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL Q+ FS L  + P+ G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  ANGGRLSLIQSQFSDLAKHAPEDGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN+A V DL RI G LGEEKQ  RIA AI K+R   PF+TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEEPFRTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELAQ L +AE++LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RH+      PA+F++I K ++  + E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRSGKAAGSRHLPMVEDKPAIFENIGKPMIAASDEEAELNPRARSAKLRAGLRTTA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S   LP L +L +  G
Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341


>gi|228998700|ref|ZP_04158287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock3-17]
 gi|229006202|ref|ZP_04163888.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock1-4]
 gi|228755043|gb|EEM04402.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock1-4]
 gi|228761168|gb|EEM10127.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock3-17]
          Length = 317

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 7   TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 67  NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT
Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETT 186

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V
Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F   S          I  +      + IT+K ++P+ E++  N R+
Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 307 RSAKLRIAEK 316


>gi|229086483|ref|ZP_04218655.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-44]
 gi|228696800|gb|EEL49613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-44]
          Length = 332

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 22  TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSRLTEGGKLIAFDQDEIAIQ 81

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 82  NAKEKFSSYGDQFVTVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHH 141

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A +VVN  + + L RI    GEEK + +IA  I   R++   +TT
Sbjct: 142 DAPLDMRMDQDASLTAYEVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKTIETT 201

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +    +    HPA R FQA+RI VN+E++   + L SA K +K GG + V
Sbjct: 202 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIKMVKPGGRVSV 261

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F   S          I  +      + IT+K ++P++E++  N R+
Sbjct: 262 ITFHSLEDRICKTTFKRNSSTPQLPPGLPIIPDEFKPKLKLITRKPILPSEEELEENNRA 321

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 322 RSAKLRIAEK 331


>gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
 gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
          Length = 332

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 147/328 (44%), Positives = 195/328 (59%), Gaps = 5/328 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G + +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MKPSDTRHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + + D   + +L Q  FS L D    +    VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AGGADLVADAGHRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R  AP  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V   K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVAKVVRA-KPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F   RS      RH+         F  ++K+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLTERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           AKLR   RT   +         P L ++
Sbjct: 300 AKLRGAERTEAPAHAAGDLPGWPTLASV 327


>gi|289578681|ref|YP_003477308.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9]
 gi|289528394|gb|ADD02746.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9]
          Length = 308

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 172/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+  G+E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTKGKLIAIDRDLDAIKAGKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYKN-VKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L +++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S   +  HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M        V + ITKK VVP++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|116253056|ref|YP_768894.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|262825308|sp|Q1ME25|RSMH_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115257704|emb|CAK08802.1| putative S-adenosyl-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 341

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 177/323 (54%), Positives = 225/323 (69%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+A L PAPGK ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLDEVLAALAPAPGKFILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLRLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
           KFF+ R+GK    RH+  ++   A F+++ K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFEAVGKPMVSASEAEAEINPRARSAKLRAGLRTYA 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
                D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|167040640|ref|YP_001663625.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514]
 gi|256752962|ref|ZP_05493788.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914681|ref|ZP_07131997.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561]
 gi|307724085|ref|YP_003903836.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513]
 gi|262825863|sp|B0K3H8|RSMH_THEPX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166854880|gb|ABY93289.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514]
 gi|256748157|gb|EEU61235.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889616|gb|EFK84762.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561]
 gi|307581146|gb|ADN54545.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513]
          Length = 308

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++   RGFS+ K  P+D
Sbjct: 65  LKNYKN-VEYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     V + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|167037220|ref|YP_001664798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115639|ref|YP_004185798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|262825860|sp|B0K8J9|RSMH_THEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166856054|gb|ABY94462.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928730|gb|ADV79415.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 308

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++   RGFS+ K  P+D
Sbjct: 65  LKNYKNA-EYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  V  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     V + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|222149144|ref|YP_002550101.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4]
 gi|263446656|sp|B9JY62|RSMH_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221736130|gb|ACM37093.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4]
          Length = 341

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 175/322 (54%), Positives = 230/322 (71%), Gaps = 1/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE VI  L P+ GKVILD TFGAGGY+ +    G++VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEPVIEALEPSAGKVILDGTFGAGGYTSAILDTGADVIALDRDPNAIAGGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + +L    FS L ++ P+ G+DG+V D+GVSSMQID  +RGFSFQ++GPLDMRMS 
Sbjct: 79  ARAGRLTLHHTRFSTLDNFAPEGGLDGIVLDIGVSSMQIDEAERGFSFQRNGPLDMRMSG 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQ+ RIA AI KRR + PFQTT+DL+ +I+   
Sbjct: 139 TGVSAADVVNRAKVGDLIRIFGFLGEEKQSGRIARAIEKRRVNHPFQTTRDLAGMIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAEALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RHM  +   PA F+ + K +V  T+E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRSGKAAGSRHMPMAFERPATFEPVGKGMVTATEEEAEINPRARSAKLRAGIRTAH 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFR 340
            +++ D S   LP L  + +  
Sbjct: 319 PAMKADFSIFDLPDLAEIERLG 340


>gi|297544901|ref|YP_003677203.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842676|gb|ADH61192.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 308

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEQILKRLTKGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYKN-VKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L +++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S   +  HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M        V + ITKK VVP++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|15965937|ref|NP_386290.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti 1021]
 gi|307308247|ref|ZP_07587956.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C]
 gi|307319714|ref|ZP_07599139.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83]
 gi|20139051|sp|Q92NL4|RSMH_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15075206|emb|CAC46763.1| Probable SAM-dependent methytransferase [Sinorhizobium meliloti
           1021]
 gi|306894645|gb|EFN25406.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83]
 gi|306901245|gb|EFN31851.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C]
          Length = 341

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 179/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+A L+PAPGK+ILD TFGAGGY+ +    G++V+ALDRDP A++ GQ  M 
Sbjct: 19  HIPVLLKEVLAALDPAPGKIILDGTFGAGGYASAILDAGADVVALDRDPTAIAAGQSMMH 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  ASGGRLKLVHSRFSDLAEHAPAQGLDGVVLDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR   PF+TT+DL++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAETPFETTRDLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAHALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  ++E+ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFTPVGKPMVAASEEEASRNPRARSAKLRAGVRTEA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341


>gi|326391684|ref|ZP_08213209.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992262|gb|EGD50729.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 308

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYKN-VEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  I K R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  V  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     + + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|307266529|ref|ZP_07548062.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918448|gb|EFN48689.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 308

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLPTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYKN-VEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  I K R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  V  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     + + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|323706128|ref|ZP_08117697.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534572|gb|EGB24354.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 310

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 8/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  L   P  + +D T G GG+S    +      +IA+DRD  A+     
Sbjct: 4   KHESVLLQETIEYLEIKPDGIYVDGTLGGGGHSYEILRRLDKGKLIAIDRDMDAIKAASI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+    +     +  ++D +   G++ +   + DLGVSS Q+D   RGFS+    PL
Sbjct: 64  RLKDFNNT-TYIHDNYKNIKDILKKCGIESIDGALLDLGVSSYQLDEAQRGFSYMHDAPL 122

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A  VVN  +  ++ +++   GEE  A RIA  IV+ R+  P +TT +L 
Sbjct: 123 DMRMDKESDITAEYVVNNYSEDEIAKVISDYGEELWAKRIAKFIVEERRRKPIKTTFELV 182

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +  SK     HPA R+FQA+RI VN E++ L   +      +  GG + +++FH
Sbjct: 183 DIIKKAIPASKRRTGPHPAKRTFQAIRIEVNEELKGLGDAIADFVDVMNPGGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  +          +++  +     V + ITKK +VP++ ++  N RSRSAKL
Sbjct: 243 SLEDRIVKNAYKKLEDPCTCPKNLPCTCGKKPVIKIITKKPIVPSEVEIKVNPRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           CGA009]
 gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 332

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 145/328 (44%), Positives = 194/328 (59%), Gaps = 5/328 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G + +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MKPSDARHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPSAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + + +   + +L Q  FS L D    +    VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AGGADLVTEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R   P  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V   K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK  G L VV
Sbjct: 181 KALADIVAKVVRA-KPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPSGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F A RS      RH+         F  ++K+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           AKLR   RT   +         P L ++
Sbjct: 300 AKLRGAERTESPAHAAGDLPGWPTLASV 327


>gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42]
 gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 341

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 178/323 (55%), Positives = 228/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L+PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGAEVIALDRDPSAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  A FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQKSGPLDMRMS 
Sbjct: 79  AHAGRLRLIHAQFSNLGDHAPQGGLDGVVLDIGVSSMQIDEPERGFSFQKSGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR+  PF+TT+DL+ LI+   
Sbjct: 139 TGVSAADVVNRAKVADLIRIFHFLGEENQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERTLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+G+    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGRATGSRHLPAAHERAATFTAIGKPMVSASEAEAEANPRARSAKLRAGLRTDA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652]
 gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 341

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 174/323 (53%), Positives = 225/323 (69%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQ+D  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DV+N+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 TGVSAADVLNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE  LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETVLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F ++ K +V  ++ +   N R+RSAKLRAG RT  
Sbjct: 259 KFFSDRAGKASGSRHLPAAHERAATFTAVGKSMVSASEAEAESNPRARSAKLRAGQRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|229162854|ref|ZP_04290811.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus R309803]
 gi|228620736|gb|EEK77605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus R309803]
          Length = 310

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFASYGEQFVTVKSNFRYLSEKLQELGIAEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAISMVKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I         + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPEEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|209884374|ref|YP_002288231.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5]
 gi|262824708|sp|B6JCF0|RSMH_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209872570|gb|ACI92366.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5]
          Length = 333

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 144/330 (43%), Positives = 203/330 (61%), Gaps = 5/330 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +   +  H+ VL  + +  L P  G + +DATFGAGGYSR      G+ VI +DRD  A+
Sbjct: 1   MSAAVSRHISVLGREAVEFLAPRAGGIYVDATFGAGGYSRRILAVAGARVIGIDRDRTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +   + +   + + +L Q  FSQL +         VDG+V D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AEAFDLVEQAEGRLTLVQDRFSQLDEVCASQNAPQVDGIVMDIGVSSMQLDRAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G SA+DVV  A+ KDL  I+ I GEE+ +  +A AIV+ RQ  P  TT
Sbjct: 121 QDGPLDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVRARQEKPILTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V+  + N IHPATR+FQALRIFVN E++EL   L ++E+ LK GG L+VV
Sbjct: 181 KVLADIVASVVHT-RPNDIHPATRTFQALRIFVNEELDELQSALHASERTLKPGGRLVVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDR+VK F  +R+ +    RHM         F+ +TK+ VV  + ++A N R+RS
Sbjct: 240 TFHSLEDRIVKNFINARASRGGGSRHMPDVERTAPSFEILTKRPVVADENEIAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           AKLRA  RT   S + D+    P L T+ +
Sbjct: 300 AKLRAAERTANASHDADTSFDWPTLRTVMK 329


>gi|227822659|ref|YP_002826631.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234]
 gi|262825425|sp|C3MEN7|RSMH_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|227341660|gb|ACP25878.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234]
          Length = 341

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 178/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PV+L +V+A L PAPGKVILD TFGAGGY+ +    G++VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVMLAEVLAALEPAPGKVILDGTFGAGGYTSAILDAGADVIALDRDPTAIAAGQPMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  + FS+L D+VP+ G+DG+VFD+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  AAGGRLRLIHSRFSELADHVPEGGLDGIVFDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR  APF+TT++L++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAEAPFETTRNLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELANALFAAERVLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
            FF  RSGK    RH+    A  A F  + K +V  ++++ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARDATFTPVGKPMVAASEDEASRNPRARSAKLRAGVRTPA 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
                D S  +LP L +L++  G
Sbjct: 319 ASPGNDLSIFNLPELASLARLGG 341


>gi|218235035|ref|YP_002368718.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264]
 gi|263446873|sp|B7H6Q4|RSMH_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218162992|gb|ACK62984.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264]
          Length = 310

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  LN  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLNIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|323701280|ref|ZP_08112955.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM
           574]
 gi|323533882|gb|EGB23746.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM
           574]
          Length = 311

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL++ I  LN  P  + +D T G  G+S    +    G  +I LD+DP A++
Sbjct: 1   MEFKHISVLLKESINGLNINPQGIYVDCTLGGAGHSTEILRRLGPGGRLIGLDQDPAAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ ++ +  +F   +A F  ++  + +     VDGV+FDLGVSS Q+D  +RGFS+  
Sbjct: 61  NAEQRLQRFAGRFQAVRANFVGIKQVLAELGISTVDGVLFDLGVSSYQLDTPERGFSYMH 120

Query: 130 SGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     +++ ++VN    ++LT I+   GEE+ A RIA  IV+ RQ  P  TT
Sbjct: 121 DAELDMRMDPDQPTSAKELVNDLPEEELTNIIRKYGEERWAKRIASFIVRERQRRPITTT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  V   ++    HPA R+FQALRI VNNE+  L   ++ A + LK GG + V
Sbjct: 181 GQLVEIIKAAVPANARREGPHPAKRTFQALRIAVNNELGILKGAIQGAVQVLKPGGRICV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR++K  F   +            +       + IT K + P  E++A+N R+
Sbjct: 241 ITFHSLEDRIIKDTFKELANPCTCPPSFPVCNCGKQPQVKIITNKPIEPGAEELAYNPRA 300

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 301 RSAKLRIAEK 310


>gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS
           571]
 gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 346

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 146/328 (44%), Positives = 197/328 (60%), Gaps = 6/328 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PV+L +V+A L P      LD TFGAGGY+R+  +     VIA+DRDP A++ GQ 
Sbjct: 17  ARHLPVMLAEVLAHLAPKDAGTCLDGTFGAGGYTRAILEAANGRVIAIDRDPTAIAGGQA 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   + +L    FS L     D     +DGVV D+GVSSMQ+D  DRGFSF++ GPL
Sbjct: 77  LVEETGGRLTLVHERFSHLDQVAQDLGAAPLDGVVLDIGVSSMQLDEADRGFSFRRDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM+  G SA+D+V   +  +L  ++  LGEE+ + +IA AIV  R  +P   T  L+ 
Sbjct: 137 DMRMANDGPSAADLVADLDEVELAHVIWTLGEERFSRQIARAIVNARAESPITRTTQLAD 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K V+  K   +HPATR+FQALRI VN E++EL   L +AE+ LK GG L+VV+FHSL
Sbjct: 197 IVSKVVWA-KPGEMHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK F + RS    A RHM  +      F+ + K  V P  ++VA N R+RSAKLRA
Sbjct: 256 EDRIVKNFLSHRSKAPSASRHMPQAEGPAPSFRLVAKGAVEPGSDEVAGNPRARSAKLRA 315

Query: 314 GMRTVERSIEDDSFVHLPRLPTLSQFRG 341
             RT   +  D     L     LSQ RG
Sbjct: 316 AERTDAPAHPDGDLAGLLP-ADLSQRRG 342


>gi|270307713|ref|YP_003329771.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS]
 gi|270153605|gb|ACZ61443.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS]
          Length = 349

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 184/313 (58%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++
Sbjct: 2   TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ +     L    F+ L+D         V G++FDLG+SSMQ+D  + GFSFQ 
Sbjct: 62  LAAERLKGFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR S     SA+D+VN   +  L+ ++   GEE  + RIA AI+++R   PF+TT
Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYGLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+S+I+K V   ++ RIHPATR+FQALRI VN E+  L   L  A+  L  GG L+V+
Sbjct: 179 TELASVIEKAVGG-RHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK++F   +   +    +      H    + I ++V+ P+ E+++ N RSR
Sbjct: 238 SYHSLEDRIVKQYFQREAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVER 320
           SAK+R   R +E 
Sbjct: 298 SAKMRVAERIIEP 310


>gi|57234909|ref|YP_181088.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195]
 gi|88909197|sp|Q3Z9L1|RSMH_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57225357|gb|AAW40414.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195]
          Length = 349

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 185/313 (59%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++
Sbjct: 2   TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ +     L    F+ L+D         V G++FDLG+SSMQ+D  + GFSFQ 
Sbjct: 62  LAAERLKCFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR S     SA+D+VN  ++  L+ ++   GEE  + RIA AI+++R   PF+TT
Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYDLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+S+I+K V   ++ RIHPATR+FQALRI VN E+  L   L  A+  L  GG L+V+
Sbjct: 179 TELASVIEKAVGG-RHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK++F   +   +    +      H    + I ++V+ P+ E+++ N RSR
Sbjct: 238 SYHSLEDRIVKQYFQKEAKGCICPDDIPQCVCNHKPSLRLINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVER 320
           SAK+R   R ++ 
Sbjct: 298 SAKMRVAERIIQP 310


>gi|134298535|ref|YP_001112031.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1]
 gi|263446306|sp|A4J2A3|RSMH_DESRM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134051235|gb|ABO49206.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1]
          Length = 313

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 171/312 (54%), Gaps = 9/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLL + I  L   PG + +D T G  G+S    +       ++ +D+DP A++
Sbjct: 1   MEFKHVSVLLHESIDGLKIKPGGIYVDCTLGGAGHSLEILRRLGPEGKLVGIDQDPAAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++++  QF   Q  F Q++  + +     VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 61  NAAEKLQEFPGQFHAVQRNFFQIKQILREMAISEVDGILFDLGVSSYQLDTPERGFSYMH 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     ISA ++VN  + ++L  I+   GE++ A RIA  IVK R+     TT
Sbjct: 121 DAELDMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKERKKRAIHTT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  V   ++    HPA R+FQALRI VNNE+E L Q ++ A  ALK+GG + V
Sbjct: 181 GELVDIIKAAVPVGARREGPHPAKRTFQALRIAVNNELEILEQTMKDAVTALKSGGRISV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR++K  F   +            +       + +T K + P++E++  N R+
Sbjct: 241 ITFHSLEDRIIKDTFKELANPCTCPPAFPVCACGKQPQIKIVTGKPIQPSKEELEHNPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 301 RSAKLRIAEKLN 312


>gi|206976726|ref|ZP_03237630.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97]
 gi|217961340|ref|YP_002339908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187]
 gi|229140568|ref|ZP_04269123.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST26]
 gi|229198030|ref|ZP_04324744.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1293]
 gi|263447288|sp|B7HM39|RSMH_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206745036|gb|EDZ56439.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97]
 gi|217067703|gb|ACJ81953.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187]
 gi|228585509|gb|EEK43613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1293]
 gi|228643129|gb|EEK99405.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST26]
          Length = 310

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVRSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|42783012|ref|NP_980259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987]
 gi|47565791|ref|ZP_00236830.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241]
 gi|222097364|ref|YP_002531421.1| s-adenosyl-methyltransferase mraw [Bacillus cereus Q1]
 gi|228987063|ref|ZP_04147188.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229157497|ref|ZP_04285574.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 4342]
 gi|88911698|sp|P62468|RSMH_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447274|sp|B9IVZ5|RSMH_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42738939|gb|AAS42867.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987]
 gi|47557071|gb|EAL15400.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241]
 gi|221241422|gb|ACM14132.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Q1]
 gi|228625947|gb|EEK82697.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 4342]
 gi|228772657|gb|EEM21098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|324327818|gb|ADY23078.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 310

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|229075675|ref|ZP_04208657.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-18]
 gi|229098389|ref|ZP_04229334.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-29]
 gi|228685006|gb|EEL38939.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-29]
 gi|228707451|gb|EEL59642.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-18]
          Length = 310

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|209550182|ref|YP_002282099.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|262825400|sp|B5ZWK2|RSMH_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209535938|gb|ACI55873.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 341

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 177/323 (54%), Positives = 228/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V++ L PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLDEVLSALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIASGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR+  PF+TT+DL+ LI+   
Sbjct: 139 AGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|316933178|ref|YP_004108160.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1]
 gi|315600892|gb|ADU43427.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1]
          Length = 332

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 149/328 (45%), Positives = 193/328 (58%), Gaps = 5/328 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           + H+   HVPVL  + + LL P  G V +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MSHSDSRHVPVLGPEAVGLLAPRDGGVYVDGTFGAGGYTRLILQTAGSRVIAIDRDPTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             G   + +   + +L Q  FS L D    +    VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  VGGAGLVAEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVIDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R   P  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V   K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVAKVVRA-KPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F A RS      RH+         F  + K+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLAKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           AKLR   RT   +         P L ++
Sbjct: 300 AKLRGAERTEAPAHAAGDLPGWPTLASV 327


>gi|49478448|ref|YP_037980.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|54036189|sp|Q6HEP6|RSMH_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49330004|gb|AAT60650.1| S-adenosyl-methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 310

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|30022007|ref|NP_833638.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 14579]
 gi|75762006|ref|ZP_00741921.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206971097|ref|ZP_03232048.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134]
 gi|218899072|ref|YP_002447483.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842]
 gi|228902424|ref|ZP_04066578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 4222]
 gi|228909744|ref|ZP_04073567.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 200]
 gi|228922671|ref|ZP_04085971.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941007|ref|ZP_04103565.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228954195|ref|ZP_04116223.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228960136|ref|ZP_04121800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228966872|ref|ZP_04127916.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228973938|ref|ZP_04134513.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980527|ref|ZP_04140837.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis Bt407]
 gi|229047603|ref|ZP_04193193.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH676]
 gi|229071418|ref|ZP_04204640.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus F65185]
 gi|229081171|ref|ZP_04213681.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-2]
 gi|229111388|ref|ZP_04240941.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-15]
 gi|229129196|ref|ZP_04258169.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-Cer4]
 gi|229146490|ref|ZP_04274861.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST24]
 gi|229152116|ref|ZP_04280311.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1550]
 gi|229180194|ref|ZP_04307538.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 172560W]
 gi|229192088|ref|ZP_04319057.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 10876]
 gi|296504412|ref|YP_003666112.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171]
 gi|33301351|sp|Q819P8|RSMH_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446850|sp|B7IVF3|RSMH_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29897563|gb|AAP10839.1| S-adenosyl-methyltransferase mraW [Bacillus cereus ATCC 14579]
 gi|74490508|gb|EAO53809.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206733869|gb|EDZ51040.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134]
 gi|218540802|gb|ACK93196.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842]
 gi|228591414|gb|EEK49264.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 10876]
 gi|228603403|gb|EEK60880.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 172560W]
 gi|228631465|gb|EEK88099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1550]
 gi|228637123|gb|EEK93582.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST24]
 gi|228654433|gb|EEL10298.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-Cer4]
 gi|228672164|gb|EEL27455.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-15]
 gi|228702215|gb|EEL54691.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-2]
 gi|228711709|gb|EEL63662.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus F65185]
 gi|228723850|gb|EEL75205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH676]
 gi|228779347|gb|EEM27604.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis Bt407]
 gi|228785804|gb|EEM33808.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792971|gb|EEM40529.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228799652|gb|EEM46605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228805515|gb|EEM52106.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228818686|gb|EEM64753.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228837100|gb|EEM82441.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228850033|gb|EEM94864.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 200]
 gi|228857168|gb|EEN01674.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 4222]
 gi|296325464|gb|ADH08392.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171]
 gi|326941688|gb|AEA17584.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 310

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|268610557|ref|ZP_06144284.1| S-adenosyl-methyltransferase MraW [Ruminococcus flavefaciens FD-1]
          Length = 313

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 8/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H+PV+L + I  L   P  + +D T G  G+S +          +IALDRDP AV+   E
Sbjct: 5   HIPVMLTECIEGLAIDPDGIYVDGTAGGAGHSSAIAAKLSEKGRLIALDRDPDAVAVATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     +  + +S+++  +       VDG++ DLGVSS Q+D G RGFS+    PL
Sbjct: 65  RLSKFSNA-QVIHSNYSEIRSVLDRLEIDSVDGILMDLGVSSFQLDEGSRGFSYHTDAPL 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D+VN  +  +L RI+   GEEK + RIA  I+K R+ AP +TT  L+ 
Sbjct: 124 DMRMSKVGTSAADIVNTYSEAELARIMFEYGEEKFSRRIASNIIKAREKAPVETTLQLAD 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+++V        +P  ++FQALRI VN+E + L++GL  A   LK  G L V++FHSL
Sbjct: 184 IIRESVPQKARRDKNPCKKTFQALRIAVNSEFDHLSKGLEDAFYCLKPQGRLAVITFHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ FA+     +                + + +K +   +E++  N RSRSAKLR
Sbjct: 244 EDRLVKQKFAAWCKGCICPPDFPQCVCGRKPEGRLVNRKPIEAGEEELENNNRSRSAKLR 303

Query: 313 AGMRTVE 319
              R+ E
Sbjct: 304 IIERSGE 310


>gi|229092966|ref|ZP_04224098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-42]
 gi|228690420|gb|EEL44205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-42]
          Length = 310

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|30263920|ref|NP_846297.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames]
 gi|47529351|ref|YP_020700.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|52141570|ref|YP_085259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus E33L]
 gi|65321245|ref|ZP_00394204.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Bacillus anthracis
           str. A2012]
 gi|118479138|ref|YP_896289.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872265|ref|ZP_02216902.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488]
 gi|167641107|ref|ZP_02399362.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193]
 gi|170709248|ref|ZP_02899669.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389]
 gi|177655554|ref|ZP_02936964.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174]
 gi|190566055|ref|ZP_03018974.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035938|ref|ZP_03103340.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W]
 gi|196038800|ref|ZP_03106108.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99]
 gi|196045790|ref|ZP_03113019.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108]
 gi|218905049|ref|YP_002452883.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820]
 gi|225865900|ref|YP_002751278.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102]
 gi|227813172|ref|YP_002813181.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684]
 gi|228916556|ref|ZP_04080122.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928967|ref|ZP_04091999.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935234|ref|ZP_04098060.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947638|ref|ZP_04109928.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123432|ref|ZP_04252636.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 95/8201]
 gi|229186159|ref|ZP_04313328.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BGSC 6E1]
 gi|229603937|ref|YP_002868154.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248]
 gi|254721453|ref|ZP_05183242.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A1055]
 gi|254735959|ref|ZP_05193665.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Western
           North America USA6153]
 gi|254754371|ref|ZP_05206406.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Vollum]
 gi|254756738|ref|ZP_05208767.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str.
           Australia 94]
 gi|301055409|ref|YP_003793620.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis CI]
 gi|33301354|sp|Q81WC3|RSMH_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77416580|sp|Q636A8|RSMH_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446803|sp|C3P688|RSMH_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446820|sp|C3L6F3|RSMH_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446828|sp|A0RHT9|RSMH_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446838|sp|B7JK06|RSMH_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446859|sp|C1EPT2|RSMH_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|30258564|gb|AAP27783.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames]
 gi|47504499|gb|AAT33175.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|51975039|gb|AAU16589.1| S-adenosyl-methyltransferase [Bacillus cereus E33L]
 gi|118418363|gb|ABK86782.1| S-adenosyl-methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711941|gb|EDR17481.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488]
 gi|167510887|gb|EDR86278.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193]
 gi|170125855|gb|EDS94761.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389]
 gi|172080083|gb|EDT65180.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174]
 gi|190562974|gb|EDV16940.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991587|gb|EDX55553.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W]
 gi|196023230|gb|EDX61908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108]
 gi|196030523|gb|EDX69122.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99]
 gi|218537984|gb|ACK90382.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820]
 gi|225790748|gb|ACO30965.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102]
 gi|227005932|gb|ACP15675.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684]
 gi|228597335|gb|EEK54986.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BGSC 6E1]
 gi|228660208|gb|EEL15844.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 95/8201]
 gi|228812158|gb|EEM58489.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824399|gb|EEM70205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830774|gb|EEM76379.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843135|gb|EEM88217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268345|gb|ACQ49982.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248]
 gi|300377578|gb|ADK06482.1| S-adenosyl-methyltransferase MraW [Bacillus cereus biovar anthracis
           str. CI]
          Length = 310

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|229031550|ref|ZP_04187550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1271]
 gi|228729839|gb|EEL80819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1271]
          Length = 310

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTA 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|167636587|ref|ZP_02394881.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442]
 gi|170688833|ref|ZP_02880036.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465]
 gi|254683371|ref|ZP_05147231.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str.
           CNEVA-9066]
 gi|254743854|ref|ZP_05201537.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Kruger
           B]
 gi|167528010|gb|EDR90816.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442]
 gi|170667188|gb|EDT17948.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465]
          Length = 310

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +    +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPITPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|49186768|ref|YP_030020.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne]
 gi|49180695|gb|AAT56071.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne]
          Length = 310

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A D VN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDAVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|229117415|ref|ZP_04246791.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-3]
 gi|228666025|gb|EEL21491.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-3]
          Length = 310

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIELVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|253576122|ref|ZP_04853454.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844465|gb|EES72481.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 324

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 170/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H+ VL E+    L   P  + +D T G GG+S         G  +IA D+D +A+  
Sbjct: 1   MFHHITVLKEEATEGLRIKPDGIYVDCTLGGGGHSSVILSKLGPGGRLIAFDQDDWALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD----------KGVDGVVFDLGVSSMQIDCGDR 123
            +E +  Y ++ +L ++ F  ++  + +            VDGV+FDLGVSS Q D G+R
Sbjct: 61  AKERLAAYADKLTLVKSNFRYIEQKLREIEGVPQLNGVPQVDGVLFDLGVSSPQFDEGER 120

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+    PLDMRM  S   +A ++VN    +++ RIL   GEEK +  IA  I  RR  
Sbjct: 121 GFSYNADAPLDMRMDQSAALTAREIVNTWPEREIARILFQYGEEKFSRWIAKVIADRRAQ 180

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT  L  LI++ +  + +    HPA RSFQALRI VN+E+    +GL +A + L  
Sbjct: 181 EPIETTGQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEEGLHAAIRCLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+ K+ FAS   K                  + I +K +VP+++++
Sbjct: 241 EGRVSVITFHSLEDRICKQIFASYVEKCTCPPDFPMCVCGGKGSLKLINRKPIVPSEQEL 300

Query: 301 AFNRRSRSAKLRAGMR 316
           A N R+RSAKLR   +
Sbjct: 301 ADNPRARSAKLRVAEK 316


>gi|150397291|ref|YP_001327758.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419]
 gi|150028806|gb|ABR60923.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419]
          Length = 362

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGKVILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 40  HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 99

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 100 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 159

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA  I KRR  APF+TT+DL++LI+   
Sbjct: 160 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 219

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VVSFHSLEDR+VK
Sbjct: 220 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 279

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  + E+ + N R+RSAKLRAG+RT  
Sbjct: 280 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 339

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 340 PSPGADLSIFNLPELASLARLGG 362


>gi|262831477|sp|A6UB93|RSMH_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 341

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGKVILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA  I KRR  APF+TT+DL++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VVSFHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  + E+ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341


>gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870]
 gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68]
 gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
 gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
          Length = 346

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGPVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|229174585|ref|ZP_04302115.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus MM3]
 gi|228608890|gb|EEK66182.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus MM3]
          Length = 310

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
 gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
          Length = 338

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 162/322 (50%), Positives = 213/322 (66%), Gaps = 2/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L  AP ++I+D TFGAGGY+ +  + G++VI  DRDP A++ G E   
Sbjct: 19  HIPVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGASVIGFDRDPEAIANGAEMAA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  A FS L ++V +  +DG+V D+GVSSMQID  +RGFSF + GPLDMRM+ 
Sbjct: 79  ASGGRLKLIHAQFSHLLEHVEEASLDGLVLDIGVSSMQIDEAERGFSFMRDGPLDMRMAQ 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +GISA+DVVN+A   DLTRI GILGEE+ A RIA AI   R   PF TT+ L+ LI+K  
Sbjct: 139 AGISAADVVNRAKASDLTRIFGILGEERHAGRIARAIEAERAKHPFSTTRQLAGLIEKVS 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR +VN+E+ ELA  L +AEKALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRRPQDKIHPATRVFQALRTYVNDELGELATALFAAEKALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF  RSGK    RH+       A F +I K+ VV  +E+   N R+RSAKLRAG+R+  
Sbjct: 259 RFFQDRSGKASGSRHLPAVQERKATFTAIGKQPVVAGEEECEANPRARSAKLRAGLRSDA 318

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            +    S   +  +P L    G
Sbjct: 319 PAGPTGS--DILPVPNLVALGG 338


>gi|319649673|ref|ZP_08003829.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2]
 gi|317398835|gb|EFV79517.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2]
          Length = 310

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H  VLL++ +  LN  P  V +D T G  G+S            + A D+D  A++ 
Sbjct: 1   MFEHTTVLLKETVEGLNIHPDGVYVDCTLGGAGHSELILSQLSEKGKLYAFDQDDTAIAH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + +Y ++ ++ ++ F  LQ+ + +     VDGV++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLAEYGDRITIIKSNFKYLQEELANLGVSKVDGVLYDLGVSSPQLDTPERGFSYHND 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   + ISA DVVN+    +L +I    GEEK + +IA  I   R+ +P +TT 
Sbjct: 121 APLDMRMDTGADISAYDVVNRWEYGELVKIFFRYGEEKFSKQIARKIEAAREVSPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +    +    HPA R FQA+RI VN+E+      L  A   L   G + V+
Sbjct: 181 QLVELIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEDSLHQAIDILNPNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  + +  + + I +K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRICKAAFKKASETPNLPPGLPIIPDEYKPILKLINRKPILPSEEELEHNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|152976280|ref|YP_001375797.1| S-adenosyl-methyltransferase MraW [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|263446007|sp|A7GRP4|RSMH_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152025032|gb|ABS22802.1| S-adenosyl-methyltransferase MraW [Bacillus cytotoxicus NVH 391-98]
          Length = 310

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLLE+ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLEETVDGLDIKPNGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKDKFSSYGEQFIAVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R+    +TT 
Sbjct: 121 APLDMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYREKKKIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L +A + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEAAIEIVKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I         + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPELPPGLPIIPEEFKPKLKLITRKPILPSDVELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|304317210|ref|YP_003852355.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778712|gb|ADL69271.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 310

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 159/308 (51%), Gaps = 8/308 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL + I  L   P  V +D T G GG+S    +      +IA+DRD  A+  
Sbjct: 1   MEFKHESVLLNETIEYLKVKPDGVYVDGTLGGGGHSYEILRRLPRGRLIAIDRDMDALYA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130
               ++D+    +     +  +++ + +  ++ +   + DLGVSS Q+D   RGFS+   
Sbjct: 61  ASVRLKDFNN-VTYVHDNYKNIKNILKNIDIERIDGAILDLGVSSYQLDEVKRGFSYMHD 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A  VVN  +  D+ RIL   GEEK A RIA  IV+ R+    +TT 
Sbjct: 120 APLDMRMDKGSALTAEHVVNNYSEDDIARILFDYGEEKWAKRIAKFIVEERKKRSIKTTF 179

Query: 190 DLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+K V  SK     HPA R+FQA+RI VN+E++ L   +      +   G + ++
Sbjct: 180 QLVDIIKKAVPASKRRTGPHPAKRTFQAIRIEVNDELKGLDSAIDDFIDVMNPNGRIAII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDR+VK  +          +++  +     V + ITKK V P +E++  N RSRS
Sbjct: 240 TFHSLEDRIVKNMYKKLENPCTCPKNLPCTCGKKPVIKIITKKPVTPNKEELKTNPRSRS 299

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 300 AKLRVAEK 307


>gi|296133667|ref|YP_003640914.1| S-adenosyl-methyltransferase MraW [Thermincola sp. JR]
 gi|296032245|gb|ADG83013.1| S-adenosyl-methyltransferase MraW [Thermincola potens JR]
          Length = 319

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 175/315 (55%), Gaps = 9/315 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV+L++ I+ LN  P  + +D T G  G+S    K       ++ +D+D  A++ G++
Sbjct: 5   HVPVMLDESISHLNIKPDGIYVDCTLGGAGHSAEILKKIQPNGFLVGIDQDINAIAAGEK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++    + L  + F++++D + +     VDGV+FDLGVSS Q+D   RGFS++   PL
Sbjct: 65  RLKNIGSNYRLVHSNFNRIRDILEELGIYRVDGVLFDLGVSSYQLDQIQRGFSYKVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A  +VN     +L +I+   GEE+ A RIA  IV+ R      TT  L 
Sbjct: 125 DMRMNPLEPVTARILVNGLTEDELAKIISEYGEERWARRIAKFIVEARAREEISTTGQLV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V    +    HPA R+FQALRI VN+E+ +    LR A + L  GG + V+SFH
Sbjct: 185 EIIKNAVPAGARKEGPHPAKRTFQALRIAVNDELNKFKSALRDAIEVLAPGGRICVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+ K+ F   + + +        +     + + IT K + P+  ++  N R+RSAK
Sbjct: 245 SLEDRITKEMFRDLAKECVCPPEFPVCTCGTVPMLKIITNKPIEPSAAEIERNPRARSAK 304

Query: 311 LRAGMRTVERSIEDD 325
           LR   R V ++ E +
Sbjct: 305 LRVAERLVLKNGEAE 319


>gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
 gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
          Length = 346

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 222/327 (67%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL++V+  L P PG VI+D TFGAGGYSR+  ++G+ V+ +DRDP A++ GQE ++
Sbjct: 19  HVPVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGARVVGIDRDPDAIAGGQELVK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + +  L    F+ L+ +    G    DGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  ASEGRLMLVPGQFADLETHARSCGFEGVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN+  VKDL R++G+LGEEK+A+ +AHAI K R+  PF  T +L++LI+
Sbjct: 139 MEQAGPSAADVVNELPVKDLIRVIGLLGEEKRATTVAHAIDKARKEKPFTRTLELANLIE 198

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +    K  +IHPATR+FQALRI+VN E+ + A+ L +AE+ LK GG L++VSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAEALGAAERILKPGGRLVLVSFHSLED 258

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF  R+  +    RHM   +  PA F+ +T+K V     +   N R+RSAKLRAG
Sbjct: 259 RIVKRFFQDRTRTRGGGSRHMPEEDVPPATFELLTRKAVEAASAETDINPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   + E D  +H   +P L+ F G
Sbjct: 319 RRTEAEARELD--IHQAGVPRLAAFHG 343


>gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1]
 gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1]
 gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
 gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
          Length = 346

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLTNAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|73748191|ref|YP_307430.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1]
 gi|147668966|ref|YP_001213784.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1]
 gi|289432241|ref|YP_003462114.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT]
 gi|88909198|sp|Q3ZZA4|RSMH_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446194|sp|A5FSB7|RSMH_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|73659907|emb|CAI82514.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1]
 gi|146269914|gb|ABQ16906.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1]
 gi|288945961|gb|ADC73658.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT]
          Length = 349

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 182/310 (58%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++   
Sbjct: 5   PHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPSAITLAA 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ +     L    F+ L+D         V G++FDLG+SSMQ+D  + GFSFQ   P
Sbjct: 65  ERLKSFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDRQESGFSFQTEAP 124

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR S     +A+D++N  +V +L+ ++   GEE  + RIA AI ++R   PF+TT +L
Sbjct: 125 LDMRFSPEQELTAADIINGYDVTELSDLIWKYGEEPFSRRIARAIAEKR---PFKTTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++ I++ V   ++ RIHPATR+FQALRI VN E+  L   L  A   L  GG L+V+S+H
Sbjct: 182 AAAIERAVGG-RHGRIHPATRTFQALRIAVNEELSHLESALSQAHSLLGHGGRLVVISYH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK++F   +   +    +      H    + I ++V+ P+ E+++ N RSRSAK
Sbjct: 241 SLEDRIVKQYFQKEAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSRSAK 300

Query: 311 LRAGMRTVER 320
           +R   R +E 
Sbjct: 301 MRVAERIIEP 310


>gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
 gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
          Length = 346

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSGGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33]
 gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
 gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
          Length = 346

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 218/336 (64%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  +  L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLILVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           16M]
 gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330]
 gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str.
           9-941]
 gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar
           Abortus 2308]
 gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19]
 gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513]
 gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686]
 gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M163/99/10]
 gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94]
 gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292]
 gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M292/94/1]
 gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1]
 gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94]
 gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99]
 gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
 gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M]
 gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330]
 gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus
           2308]
 gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19]
 gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
          Length = 346

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|23098917|ref|NP_692383.1| hypothetical protein OB1462 [Oceanobacillus iheyensis HTE831]
 gi|22777145|dbj|BAC13418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 329

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 9/316 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +   + +H  VL E+ I  L   P  + +D T G GG+S            + A D+D  
Sbjct: 1   MGVEMFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A++  ++ +  Y ++    Q+ F  L++ +       VDG++FDLGVSS Q+D GDRGFS
Sbjct: 61  ALAAARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFS 120

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +     LDMRM  S   SA +VVN+ + + L  I    GEEK + +IA  I   R+    
Sbjct: 121 YNHDALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDI 180

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  +    +    HPA R FQALRI VN+E+E     L  A + +   G 
Sbjct: 181 KTTHQLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V++FHSLEDR+ K+ F   S      RH+     +H A F+ +T+K +     ++  N
Sbjct: 241 IAVITFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDEN 300

Query: 304 RRSRSAKLRAGMRTVE 319
           RRSRSAKLR   +  E
Sbjct: 301 RRSRSAKLRVIEKVSE 316


>gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28]
 gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90]
          Length = 347

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 9   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 68

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 69  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 128

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 129 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 188

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 189 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 248

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 249 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 308

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 309 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|160933348|ref|ZP_02080736.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753]
 gi|156867225|gb|EDO60597.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753]
          Length = 308

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/304 (39%), Positives = 172/304 (56%), Gaps = 7/304 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H+PVLL + I  L   P  V +D T G GG+S +  K      +IA+D+DP A++   +
Sbjct: 4   YHLPVLLRETIEGLAVKPDGVYVDGTAGGGGHSEAIAKRLSTGRLIAIDQDPDAIAAVTK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY    ++ +A FSQ+++ V       VDGV+ D+GVSS Q+D  +RGFS+    PL
Sbjct: 64  RLADYPG-VTVCRANFSQMEEVVRSLGVDSVDGVLMDIGVSSHQLDTPERGFSYHSDAPL 122

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G  A D+VN    ++L  IL   GEE+ + RIA  I   R+ AP +TT  L+ 
Sbjct: 123 DMRMSQEGPGAGDLVNSLPWQELAEILSRYGEERFSKRIAQGIAAAREQAPIETTFQLAE 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++     +     HPA ++FQALRI VN E++ L++GL +A   LK GG L V++FHSL
Sbjct: 183 IVKNAYPAAARRDGHPARKTFQALRIAVNGELDRLSEGLDAAFSLLKPGGRLAVITFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+  AS                      + +T+K V  ++ ++  N RSRSAKLR
Sbjct: 243 EDRLVKRRMASWCQGCTCPPDFPVCVCGKTPSAELVTRKPVKASETELEKNPRSRSAKLR 302

Query: 313 AGMR 316
             +R
Sbjct: 303 VCIR 306


>gi|163941658|ref|YP_001646542.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis
           KBAB4]
 gi|229061524|ref|ZP_04198868.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH603]
 gi|229168659|ref|ZP_04296381.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH621]
 gi|263447259|sp|A9VU80|RSMH_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163863855|gb|ABY44914.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis
           KBAB4]
 gi|228614815|gb|EEK71918.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH621]
 gi|228717758|gb|EEL69408.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH603]
          Length = 310

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026]
 gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 167/336 (49%), Positives = 217/336 (64%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR   P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAPKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIH ATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHSATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|33301401|sp|Q8ER53|RSMH_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 325

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 163/312 (52%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VL E+ I  L   P  + +D T G GG+S            + A D+D  A++ 
Sbjct: 1   MFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y ++    Q+ F  L++ +       VDG++FDLGVSS Q+D GDRGFS+   
Sbjct: 61  ARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   SA +VVN+ + + L  I    GEEK + +IA  I   R+    +TT 
Sbjct: 121 ALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTH 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +    +    HPA R FQALRI VN+E+E     L  A + +   G + V+
Sbjct: 181 QLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S      RH+     +H A F+ +T+K +     ++  NRRSR
Sbjct: 241 TFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 301 SAKLRVIEKVSE 312


>gi|258514333|ref|YP_003190555.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778038|gb|ACV61932.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM
           771]
          Length = 311

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 172/306 (56%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PV+L +VI  LN  PG + +D T G  G+S +  +       +I LD+DP A++   E
Sbjct: 5   HKPVMLAEVIDGLNIRPGGIYVDCTLGGAGHSSAIAQKLDGRGLLIGLDQDPEALAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y          FS++      +  + VDG+++DLGVSS Q+D   RGFS+    PL
Sbjct: 65  RLAVYGALVKTVGRNFSEIASVLSSLNIESVDGILYDLGVSSYQLDNPSRGFSYMHEAPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   GI+A D+VN  + + L  I+   GEE+ ASRIA  I++ R+     TT  L 
Sbjct: 125 DMRMNPQSGITAGDLVNSLSQEKLAEIIQSYGEERWASRIAGFIIEERRHKNICTTGQLV 184

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +   ++ +  HPA R+FQALRI VN E+E L Q LR   K L+ GG + V++FH
Sbjct: 185 QIIKKAIPAGARRDGPHPAKRTFQALRIAVNRELEILQQALRDGIKFLRTGGRICVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+ F S +   +    +           + IT K +VPT+ ++  N R+RSAK
Sbjct: 245 SLEDRLVKEVFKSVAKGCICPPRLPVCLCGKQKELKIITGKPLVPTETELKDNPRARSAK 304

Query: 311 LRAGMR 316
           LR   R
Sbjct: 305 LRIAER 310


>gi|251797883|ref|YP_003012614.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2]
 gi|262824736|sp|C6D563|RSMH_PAESJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247545509|gb|ACT02528.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2]
          Length = 316

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 173/315 (54%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VLLE+ +  L   PG + +D T G  G+S         G  +IA D+D  A+  
Sbjct: 1   MFQHITVLLEEAVDGLAIKPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---------VVFDLGVSSMQIDCGDRG 124
            +  +  Y ++ +L ++ F  L++ +    V           ++FDLGVSS Q+D  +RG
Sbjct: 61  ARVRLAPYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM   G  +A D+VN    ++++RIL + GEEK A  IA  IV+ R++A
Sbjct: 121 FSYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIVQARENA 180

Query: 184 PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L+ L++  +   ++    HPA RSFQALRI VN+E+      L  A K ++ G
Sbjct: 181 PIETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K+ FAS   K                  + + +K +VPT++++ 
Sbjct: 241 GRISVITFHSLEDRICKQLFASYVEKCTCPPDFPKCVCGGTGKLRLVNRKPIVPTEQELE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 301 VNPRSRSAKLRVAEK 315


>gi|222086453|ref|YP_002544986.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|263446643|sp|B9JH59|RSMH_AGRRK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221723901|gb|ACM27057.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 341

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 179/323 (55%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+  L PAPGK+ILD TFGAGGY+ +    G+++IALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLKEVLEALAPAPGKLILDGTFGAGGYTSAILAAGADMIALDRDPTAIAAGQSMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  + +L Q+ FSQL D+ P  G+DGVV D+GVSSMQ+D  +RGFSF K+GPLDMRMS 
Sbjct: 79  AHAGRLTLIQSQFSQLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFSKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN A + DL RI   LGEEKQA RIAHAI KRR  APF TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNHAKLADLIRIFVFLGEEKQAPRIAHAIEKRRAEAPFVTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFFA RSG+    RHM   +   A F  I K ++  +  +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFADRSGRAGGSRHMPMVHERLATFDPIGKPMISASDAEAEINPRARSAKLRAGLRTSV 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
           ++   D S   LP L +L +  G
Sbjct: 319 QAEAADLSIFDLPNLASLGKLGG 341


>gi|170759536|ref|YP_001786877.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str.
           Loch Maree]
 gi|263446098|sp|B1L164|RSMH_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169406525|gb|ACA54936.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 309

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA +VVN    ++L RI    GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENFSAYNVVNSYEEEELFRIFKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|150390647|ref|YP_001320696.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
 gi|263433264|sp|A6TS69|RSMH1_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|149950509|gb|ABR49037.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
          Length = 311

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 171/311 (54%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
              +H  VLL++ I  L+     + +D T G  G+S+   K+      +I +D+D  A+S
Sbjct: 1   MNFEHTSVLLKECIEALDIKENGIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALS 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E + ++  +  L    F  L   + +     +DGV+ DLGVSS Q+D  +RGFS+ +
Sbjct: 61  AAGERLEEHGTKVKLVHDNFHNLDKILENLEITTIDGVLLDLGVSSHQLDERERGFSYMQ 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G SA D+VN  + K+L RI+   GE++ A RIA  IV+ R+ AP +TT
Sbjct: 121 DAPLDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQERELAPIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             +  +I+K V    + +  HPA R+FQA+RI VN E+E +   + +A K +K GG + +
Sbjct: 181 HQMVEVIKKAVPKGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAAKHMKPGGRIAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK  F       +              + + +T+K ++P++ ++  N RS
Sbjct: 241 ISFHSLEDRIVKNVFRRLQNPCVCPPQFPVCKCEKEQMVKIVTRKPILPSEAELEVNPRS 300

Query: 307 RSAKLRAGMRT 317
           RSAKLR   R 
Sbjct: 301 RSAKLRVAERV 311


>gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
 gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
          Length = 347

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 165/336 (49%), Positives = 216/336 (64%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L P  G VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 9   NSQAEGAEVRHVPVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPT 68

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   + +  +  L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 69  AIEAGRAMEKQFPGRLDLVESRFSALDEAVSKVKGAGSKVDGVVLDIGVSSMQIDEAERG 128

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+DVVN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 129 FSFQKDGPLDMRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQP 188

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 189 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 248

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK++FA R+G     RH+  ++     F    K  V PT E+   N 
Sbjct: 249 LVVVTFHSLEDRMVKRYFADRAGGSAGSRHLPETHVRLPSFTPAVKGAVGPTAEEEERNP 308

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 309 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|226313432|ref|YP_002773326.1| S-adenosyl-methyltransferase MraW [Brevibacillus brevis NBRC
           100599]
 gi|263445821|sp|C0ZGB3|RSMH_BREBN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226096380|dbj|BAH44822.1| S-adenosyl-methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 188/313 (60%), Gaps = 9/313 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +      HV VL+++ +  LN  PG + +D T G  G+S         G  +IA+D+D +
Sbjct: 1   MTTLSFHHVTVLMDEAVQGLNIRPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAIDQDDW 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   +E +  Y ++ +L ++ F  ++D V D    GVDGV+FDLGVSS Q+D G+RGFS
Sbjct: 61  ALDNARERLASYMDRVTLVKSNFRHIKDIVKDLGLSGVDGVLFDLGVSSPQLDEGERGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM     +SA D++N+ + +++ +I+ + GEEK + RIA  IV++R+  P 
Sbjct: 121 YNADAPLDMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQRKKQPI 180

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           QTT +L  LI++ +  + +    HPA R+FQA+RI VN+E++   + +  A + L   G 
Sbjct: 181 QTTGELVELIKEGIPAAARRTGPHPAKRTFQAIRIAVNDELDAFKEAVVDAIEVLNPEGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V++FHSLEDR+ K+ +   S          I +  + AV + IT+K ++P++E++  N
Sbjct: 241 VSVITFHSLEDRICKQIYQDFSKGCTCPPAFPICTCGNKAVVKVITRKPILPSEEELEAN 300

Query: 304 RRSRSAKLRAGMR 316
           +R+RSAKLR   +
Sbjct: 301 KRARSAKLRVAEK 313


>gi|253699149|ref|YP_003020338.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21]
 gi|263455964|sp|C6DZJ8|RSMH_GEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|251773999|gb|ACT16580.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21]
          Length = 312

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VL ++V+  L+P  G V +D T G  G++            +I  DRD  A++  ++
Sbjct: 6   HISVLPDEVLQALSPKSGGVYVDGTLGGAGHAGLILTASAPEGRLIGFDRDEEAIAVARQ 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  +    F+ +   + +    G+DG V DLGVSS Q+D  +RGFSF    PL
Sbjct: 66  RLSVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G SA+D+VN     +L RI+   GEE+ A R+A  IVK R   P +TT +L 
Sbjct: 126 DMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKARDERPIETTLELV 185

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  +K   R+HPATR+FQALRI VN E++ L +GL+     LK GG   V+SFH
Sbjct: 186 DVIKGAIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLLSLLKQGGRGAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F + +      +   I        F+ +T+K +   + +VA N RSRSAK
Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICVCGRVPRFKLVTRKPITAGESEVAANPRSRSAK 305

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 306 LRVVEKI 312


>gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           KLH11]
 gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           KLH11]
          Length = 330

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 201/328 (61%), Gaps = 6/328 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+ A   +   H+PVLL  ++A + P    V LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MAGAQTSSDKPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYTRGLLEAGAEKVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A     +    Y ++  + Q  FS + +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAADWAGGYGDRLVMQQGVFSCMDEYARD--LDGVVLDLGVSSMQLDQAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+VN+A    L  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 118 MKDGPLDMRMSQQGDSAADLVNEATEAQLADILFHYGEERASRRIARAIVRARAEDPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQ LRI VN E EEL QGL +AE+ALK GG L V
Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFQGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF SR+GK   A R+          F   T+K V P  +++  N R+
Sbjct: 238 VTFHSIEDRMVKRFFQSRAGKTGRANRYAPEMAQEQPQFTLKTRKAVGPDDQELEENPRA 297

Query: 307 RSAKLRAGMRTVERSIEDDS-FVHLPRL 333
           RSAKLR  +RT   + E ++  + +P+L
Sbjct: 298 RSAKLRVAVRTDAPAGEIEARAIGMPQL 325


>gi|308173479|ref|YP_003920184.1| S-adenosyl-dependent methyltransferase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606343|emb|CBI42714.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus amyloliquefaciens DSM 7]
 gi|328553591|gb|AEB24083.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus amyloliquefaciens
           TA208]
 gi|328911615|gb|AEB63211.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus amyloliquefaciens LL3]
          Length = 311

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++T+ +YK Q  L ++ F  L++ + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKQTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   +A +VVN+   +DL RI    GEEK + +IA  I + R+ +P QTT 
Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S        +           + IT+K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRMCKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|28211297|ref|NP_782241.1| S-adenosyl-methyltransferase MraW [Clostridium tetani E88]
 gi|42559471|sp|Q894B4|RSMH_CLOTE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28203737|gb|AAO36178.1| S-adenosyl-methyltransferase mraW [Clostridium tetani E88]
          Length = 310

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLL++ I  LN     + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLDECIEGLNIKENGIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +++Y+       + F  ++D + +     VDG++ DLGVSS Q+D   RGFS+ +
Sbjct: 61  AASEKLKEYENVL-YKHSNFYHIKDILEELEVGKVDGILMDLGVSSYQLDEKSRGFSYMQ 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + PLDMRM+      A +VVN  +   L RI+   GEE+ A RI++ IV+ R++   +TT
Sbjct: 120 NAPLDMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESRENKKIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +    +    HPA R+FQA+RI VN E+E L + +  + K+LK+GG + +
Sbjct: 180 GELVDIIKRAIPAKFRREGPHPAKRTFQAIRIEVNGELEILNKAIEDSVKSLKSGGRIAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F       +  +     +     + + IT+K + P++E+V  N RS
Sbjct: 240 ITFHSLEDRIVKNKFKELEDPCICPKDFPICTCGKEPLVKIITRKPIDPSKEEVEINPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIAEK 309


>gi|332654098|ref|ZP_08419842.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16]
 gi|332517184|gb|EGJ46789.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16]
          Length = 327

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 8/314 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72
                H PVLL++ I  LN  P  + LD T G  G+SR   +      +I +DRD  A+ 
Sbjct: 2   SETFTHRPVLLDECIEALNIRPDGIYLDGTLGRAGHSREIARRLTTGRLICVDRDQAALD 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q+ ++D+ ++ +L  + F QL   +      GVDG++FDLGVSS Q+D G RGFS+  
Sbjct: 62  AAQDRLKDWMDRVTLVHSNFDQLDAILDRLGLAGVDGMLFDLGVSSPQLDDGSRGFSYMA 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G++A+DVVNQ + ++L RIL   GEE+ A  IA AIV+RRQ  P +TT
Sbjct: 122 DAPLDMRMDRSEGLTAADVVNQWSQEELRRILSQYGEERYAPSIAAAIVRRRQDKPIETT 181

Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +       + HPA RSFQA+RI VN+E+  + + +R+A   L  GG L V
Sbjct: 182 LELVDIIKSAMPARALKEKQHPAKRSFQAIRIAVNDELASVDRMVRAAIPRLNKGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK   A  +                    +   +K ++P++ +V  N R+
Sbjct: 242 ITFHSLEDRIVKTDLAEFAKGCTCPPDFPVCVCGKTPDVKLTPRKPILPSEREVEENPRA 301

Query: 307 RSAKLRAGMRTVER 320
           RSAKLR   +  + 
Sbjct: 302 RSAKLRVAEKLKDP 315


>gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str.
           Ether]
 gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
          Length = 346

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENAPLEDDLSLFGLPKLPETNEL 343


>gi|168180112|ref|ZP_02614776.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916]
 gi|182668973|gb|EDT80949.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916]
          Length = 309

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENFSAYNVVNNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|27381721|ref|NP_773250.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium japonicum USDA
           110]
 gi|27354890|dbj|BAC51875.1| S-adenosyl-methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 387

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 150/325 (46%), Positives = 200/325 (61%), Gaps = 5/325 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
           +   H+PVL  + I  L P  G + +DATFGAGGYSR+     G+ +IA+DRD  A++ G
Sbjct: 60  SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 119

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131
            E +     + +L +  FS L D    +GVD V   +     SSMQ+D   RGFSF+  G
Sbjct: 120 AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 179

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM  +G +A+DVV +A+  DL  I+ +LGEE+ + R+A AIV  RQ  PF TT+ L
Sbjct: 180 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 239

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V   K   IHPATR+FQALRIFVN E+EEL   L +AE+ LK GG L+VVSFH
Sbjct: 240 ADLVGRVVRS-KPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 298

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK F A RS      RH+         FQ +T++ VV  +++VA N R+RSAKL
Sbjct: 299 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 358

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTL 336
           RA  RT   + +DD     PRL  +
Sbjct: 359 RAAERTSAPAHKDDQSSSWPRLSDV 383


>gi|42558979|sp|Q89FT9|RSMH_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 329

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 150/325 (46%), Positives = 200/325 (61%), Gaps = 5/325 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
           +   H+PVL  + I  L P  G + +DATFGAGGYSR+     G+ +IA+DRD  A++ G
Sbjct: 2   SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131
            E +     + +L +  FS L D    +GVD V   +     SSMQ+D   RGFSF+  G
Sbjct: 62  AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM  +G +A+DVV +A+  DL  I+ +LGEE+ + R+A AIV  RQ  PF TT+ L
Sbjct: 122 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V   K   IHPATR+FQALRIFVN E+EEL   L +AE+ LK GG L+VVSFH
Sbjct: 182 ADLVGRVVRS-KPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK F A RS      RH+         FQ +T++ VV  +++VA N R+RSAKL
Sbjct: 241 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 300

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTL 336
           RA  RT   + +DD     PRL  +
Sbjct: 301 RAAERTSAPAHKDDQSSSWPRLSDV 325


>gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
 gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
          Length = 346

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGSSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENSPLEDDLSLFGLPKLPETNEL 343


>gi|226948790|ref|YP_002803881.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str.
           Kyoto]
 gi|263446084|sp|C1FME6|RSMH_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226843346|gb|ACO86012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str.
           Kyoto]
          Length = 309

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENLSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|148379426|ref|YP_001253967.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932097|ref|YP_001383805.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935599|ref|YP_001387355.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           Hall]
 gi|263446050|sp|A7FTX8|RSMH_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446073|sp|A5I1T3|RSMH_CLOBH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148288910|emb|CAL82997.1| S-adenosyl-methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928141|gb|ABS33641.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931513|gb|ABS37012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           Hall]
          Length = 309

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|154685933|ref|YP_001421094.1| S-adenosyl-methyltransferase MraW [Bacillus amyloliquefaciens
           FZB42]
 gi|263446791|sp|A7Z4D7|RSMH_BACA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154351784|gb|ABS73863.1| YlxA [Bacillus amyloliquefaciens FZB42]
          Length = 311

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++T+ +YK Q  L ++ F  L++ + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   +A +VVN+   +DL RI    GEEK + +IA  I + R+ +P QTT 
Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S        +           + IT+K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRMCKMTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|15895401|ref|NP_348750.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum ATCC
           824]
 gi|20139082|sp|Q97H81|RSMH_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15025123|gb|AAK80090.1|AE007714_3 Predicted S-adenosylmethionine-dependent methyltransferase,
           involved in cell envelope biogenesis YLXA B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325509547|gb|ADZ21183.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum EA
           2018]
          Length = 312

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MEFNHVPVLLEETIENLNIKEDGIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +++YK   +     FS +++ + +     VDG++ DLGVSS Q+D  +RGFS+  
Sbjct: 61  AASERLKEYKN-LTFVHDNFSNIKNILEELKIDKVDGILADLGVSSYQLDEPERGFSYMN 119

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA DV+N  + + L  I+   GEEK A RIA  IV++R      TT
Sbjct: 120 DAPLDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFIVEKRSEEAINTT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    +    HPA R+FQA+RI VN E+E L + +  +   LK+ G + +
Sbjct: 180 FELVDIIKAAIPAKFRRQGPHPAKRTFQAIRIEVNQELEILNKTIEDSVDKLKSEGRICI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  +       M  + +           + IT+K +  +  ++ +N RS
Sbjct: 240 ITFHSLEDRIVKNKYRELQDPCMCPKDIPMCVCGKKPKIKIITRKPIEASSYELEYNPRS 299

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 300 RSAKLRVAEKIN 311


>gi|168182383|ref|ZP_02617047.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf]
 gi|237794792|ref|YP_002862344.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str.
           657]
 gi|263446362|sp|C3KV90|RSMH_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182674378|gb|EDT86339.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf]
 gi|229262949|gb|ACQ53982.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str.
           657]
          Length = 309

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENLSAYGVINNYKEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|168186149|ref|ZP_02620784.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str.
           Eklund]
 gi|169295776|gb|EDS77909.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str.
           Eklund]
          Length = 309

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 161/310 (51%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MNFNHVPVLLEETIDSLNIKKDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  ++ Y+   +     F  L   + +   + VDG++ DLGVSS Q+D  +RGFS+  
Sbjct: 61  AAKNRLKGYEN-ITYVHNNFYNLAGILDELNVEKVDGILMDLGVSSYQLDTPERGFSYMN 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM+   GISA DVVN  +  DL RI+   GEE+ A +IA AIVK R   P +TT
Sbjct: 120 DAMLDMRMNTESGISAYDVVNGYSEDDLFRIIKNYGEERFARKIARAIVKERNEKPIETT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  +I+  +        HPA ++FQA+RI VN+E+E L + +      L   G + V+
Sbjct: 180 LQLVKIIRNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNKDGRISVI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR++K  F          +           + + IT+K + P++ +   N RSR
Sbjct: 240 TFHSLEDRIIKTKFKELENPCTCPKEFPICVCGKKPIVKVITRKPIEPSEVERENNSRSR 299

Query: 308 SAKLRAGMRT 317
           S+KLR   + 
Sbjct: 300 SSKLRVAQKI 309


>gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13]
 gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
 gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
          Length = 346

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 166/336 (49%), Positives = 219/336 (65%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ ++I  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGASAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|158320404|ref|YP_001512911.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs]
 gi|263446681|sp|A8MH28|RSMH_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158140603|gb|ABW18915.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs]
          Length = 311

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 168/308 (54%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLLE+ I  LN     + +D T G  G+S    K  S+   +I +D+D  A+    
Sbjct: 4   KHVSVLLEECIENLNIKENGIYVDGTLGGAGHSSEIAKRLSDKGLLIGIDQDENAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +   KE+  L +  FS +   + +    G+DG++ DLGVSS Q+D  DRGFS+    P
Sbjct: 64  EKLTPMKERIKLVRDNFSNIDAILQNLEIDGIDGILLDLGVSSHQLDEADRGFSYMHDAP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA +VVN    KDL  I+   GEEK A RIA+ IV  R+  P  TT  L
Sbjct: 124 LDMRMDTRQAVSAMEVVNSYTEKDLENIIKNYGEEKWAKRIANFIVDFRKEEPITTTHQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +    + +  HPA R+FQA+RI VN E+E + + +  A + L  GG + +++F
Sbjct: 184 VDVIKRAIPKGARIDGPHPAKRTFQAIRIEVNGELEIINKTIDDAVRNLNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   S   +                + IT+K +VPT+E++  N R+RSA
Sbjct: 244 HSLEDRIVKNAFRDLSNPCICPPEFPICRCDRKPAVKIITRKPIVPTEEELELNPRARSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRVAEKI 311


>gi|327441162|dbj|BAK17527.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Solibacillus silvestris StLB046]
          Length = 316

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 167/313 (53%), Gaps = 9/313 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  + +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNINPDGIYVDCTLGGAGHSEYLVQQLSEKGRLICFDQDTTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++     + F  L++ +       +DG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKVRLADYLDRVIFVHSNFRYLKEELHKLNIHQIDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  +SA  VVN+ + ++L RI    GEEK + ++A  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQTAELSAYHVVNEWSYENLVRIFFRYGEEKFSKQVARKIEQAREIAPVETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA R FQA+RI VN+E+      L  A   LK GG + V+
Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDLLKIGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S        +     H   + + +++K ++P+ E++A N RSR
Sbjct: 241 TFHSLEDRLTKTLFKEASSLPDLPPGLPVIPEHMKPILKLVSRKPILPSDEELAANNRSR 300

Query: 308 SAKLRAGMRTVER 320
           SAKLR   +  ++
Sbjct: 301 SAKLRIAEKINDK 313


>gi|16078578|ref|NP_389397.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309385|ref|ZP_03591232.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313712|ref|ZP_03595517.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318634|ref|ZP_03599928.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322908|ref|ZP_03604202.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730600|sp|Q07876|RSMH_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1122760|emb|CAA92525.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633885|emb|CAB13387.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. subtilis str. 168]
          Length = 311

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++Y+ ++    VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLSDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   SA +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S        +           + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|118444716|ref|YP_878007.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT]
 gi|263446115|sp|A0Q055|RSMH_CLONN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118135172|gb|ABK62216.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT]
          Length = 309

 Score =  265 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 164/310 (52%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MNFNHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++DY+   +     F  L   + +     VDG++ DLGVSS Q+D  +RGFS+ K
Sbjct: 61  AAKERLKDYEN-VTYVHNNFYNLASILDELNVDKVDGILMDLGVSSYQLDTPERGFSYMK 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM+  +GISA DVVN  +  DL RI+   GEE+ + +IA AIVK R   P +TT
Sbjct: 120 DAMLDMRMNTENGISAYDVVNGYSEDDLFRIIKDYGEERFSRKIAKAIVKERNEKPVETT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L  +I+  +        HPA ++FQA+RI VN+E+E L + +      L   G + V+
Sbjct: 180 LELVKIIKDVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNPNGRISVI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR++K  F          +           V + +T+K + P + +   N RSR
Sbjct: 240 TFHSLEDRIIKTKFKELENPCTCPKEFPICVCGKKPVVKVVTRKPIEPNEFERENNSRSR 299

Query: 308 SAKLRAGMRT 317
           S+KLR   + 
Sbjct: 300 SSKLRVAQKI 309


>gi|262831532|sp|Q133W3|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 147/328 (44%), Positives = 197/328 (60%), Gaps = 5/328 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G V +D TFGAGGY+R   +   + VIA+DRD  A+
Sbjct: 1   MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++    + +L +  FS L D    +    VDGVV D+GVSSMQ+D  DRGFSF+
Sbjct: 61  ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G +A+DVV  A+  DL  I+ I GEEK +  +A AI+  R+ AP  TT
Sbjct: 121 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++  TV  SK  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIV-ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F   RS      RH+         F  +TK+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           AKLR   RT   +   D     P L ++
Sbjct: 300 AKLRGAERTAAPAHRPDDLPGWPTLASV 327


>gi|257867494|ref|ZP_05647147.1| methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873823|ref|ZP_05653476.1| methyltransferase [Enterococcus casseliflavus EC10]
 gi|257877573|ref|ZP_05657226.1| methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801550|gb|EEV30480.1| methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807987|gb|EEV36809.1| methyltransferase [Enterococcus casseliflavus EC10]
 gi|257811739|gb|EEV40559.1| methyltransferase [Enterococcus casseliflavus EC20]
          Length = 319

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  V+L++ +  L   P  V +D T G  G+S           ++ A D+D  A+   +E
Sbjct: 6   HYTVMLQETVDGLKIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTAIDHAKE 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  ++ F  L++ +       VDG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 66  RLAPYVAKGMVTFIKSNFRYLKEALHQHGVSRVDGILYDLGVSSPQLDEAERGFSYHQDA 125

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   +A +VVNQ +   L +I    GEEK + +IA  I + RQ  P +TT +
Sbjct: 126 PLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHPIETTGE 185

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 186 LVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEESLEQAIHLLAVNGRVSVIT 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S        +           + IT+K ++PT+E+VA N RSRS
Sbjct: 246 FHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLITRKPLLPTEEEVAENNRSRS 305

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 306 AKLRIAEKIKE 316


>gi|91977868|ref|YP_570527.1| methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91684324|gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 398

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 147/328 (44%), Positives = 197/328 (60%), Gaps = 5/328 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G V +D TFGAGGY+R   +   + VIA+DRD  A+
Sbjct: 67  MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 126

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++    + +L +  FS L D    +    VDGVV D+GVSSMQ+D  DRGFSF+
Sbjct: 127 ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 186

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G +A+DVV  A+  DL  I+ I GEEK +  +A AI+  R+ AP  TT
Sbjct: 187 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 246

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++  TV  SK  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 247 KALADIV-ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 305

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F   RS      RH+         F  +TK+ +V    +VA N R+RS
Sbjct: 306 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 365

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           AKLR   RT   +   D     P L ++
Sbjct: 366 AKLRGAERTAAPAHRPDDLPGWPTLASV 393


>gi|239826514|ref|YP_002949138.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70]
 gi|263455972|sp|C5D8L5|RSMH_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239806807|gb|ACS23872.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70]
          Length = 310

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  L+  P  + +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLHIKPDGIYVDCTLGGGGHSEYLLSQLSEDGRLFAFDQDDMAIEY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y++Q +  +  F  L + +       VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKRLARYEKQVTFIRRNFRFLAEELTARGVHRVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+    ++A D+VN    ++L  I    GEEK + ++A  I + R+    +TT 
Sbjct: 121 APLDMRMNREQSLTAYDIVNHWPYEELVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++ +  HPA R FQA+RI VN+E++   + +  A   LK+GG + V+
Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFKEAITQAIDLLKSGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +    + +    + ITKK +VP++E++  N R+R
Sbjct: 241 TFHSLEDRICKVAFKEASQGPQLPPGLPLIPDQYRPALKIITKKPIVPSEEEIEHNHRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|254456040|ref|ZP_05069469.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083042|gb|EDZ60468.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 336

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/335 (35%), Positives = 182/335 (54%), Gaps = 5/335 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           M + I   +  H PVLL+++I++ +P  G   +D TFG GGYS+       +++IALDRD
Sbjct: 1   MEATIVSELQKHYPVLLKEIISVFSPQHGGTFIDCTFGQGGYSKKILDFENTSIIALDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFS 126
             +     +   +++++F      FSQL +    ++ + GV+FDLG S  QI    +G S
Sbjct: 61  VESEKIANKFKENFEDRFIFKNIKFSQLNNLKLKNENIRGVIFDLGYSYTQIKDPLKGLS 120

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  G L+M++  +  SA D +N+ + K+L +I    G+EK+   IA  I+K R      
Sbjct: 121 FEADGKLNMQLGLNSYSAEDAINKLDEKELEKIFKFFGDEKEGKYIARNIIKERLKNKID 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T   +  + +      KN ++H AT+ FQALRIFVN EI EL  GL +A K LK GG+L 
Sbjct: 181 TRALVEIIDKSKKR--KNFKVHNATKVFQALRIFVNKEISELIYGLINATKVLKKGGILG 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLED++VK FF S S      R+   +     +F  I KK ++P+ E+V+ N  S
Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRYSPVTEQSETLFNLIQKKPILPSDEEVSENPPS 298

Query: 307 RSAKLRAGMRTVERSIEDDSFVH-LPRLPTLSQFR 340
           RSAK R  ++  +    D    +    L  +  + 
Sbjct: 299 RSAKFRYVIKKSDFYNFDTDVENQFRNLIEIENYG 333


>gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
 gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
          Length = 346

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 165/336 (49%), Positives = 218/336 (64%), Gaps = 6/336 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +S        HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+D DP 
Sbjct: 8   NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDCDPT 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+  G+   +++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RG
Sbjct: 68  AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + P
Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL++ I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG 
Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L++V+FHSLEDR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N 
Sbjct: 248 LVIVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307

Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339
           R+RSAKLRAG+RT    +EDD S   LP+LP  ++ 
Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|325571379|ref|ZP_08146879.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus casseliflavus ATCC 12755]
 gi|325155855|gb|EGC68051.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus casseliflavus ATCC 12755]
          Length = 331

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 165/317 (52%), Gaps = 11/317 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           H     H  V+L++ +  L+  P  V +D T G  G+S           ++ A D+D  A
Sbjct: 12  HMADFQHYTVMLQETVDGLSIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTA 71

Query: 71  VSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125
           +   +E +  Y  K   +  ++ F  L++ +       VDG+++DLGVSS Q+D  +RGF
Sbjct: 72  IDHAKERLAPYVAKGMVTFIKSNFRYLKEALNQHGVSRVDGILYDLGVSSPQLDEAERGF 131

Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ +  PLDMRM  +   +A +VVNQ +   L +I    GEEK + +IA  I + RQ  P
Sbjct: 132 SYHQDAPLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHP 191

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  +   L  A   L   G
Sbjct: 192 IETTGELVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEDSLEQAIHLLAVNG 251

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302
            + V++FHSLEDR+VK  F   S        +           + IT+K ++PT+E+VA 
Sbjct: 252 RVSVITFHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLITRKPLLPTEEEVAE 311

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   +  E
Sbjct: 312 NNRSRSAKLRIAEKIKE 328


>gi|169827004|ref|YP_001697162.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus sphaericus C3-41]
 gi|263456365|sp|B1HPY0|RSMH_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168991492|gb|ACA39032.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus sphaericus C3-41]
          Length = 316

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 168/316 (53%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  V +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y E+ +   + F  L++       + VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +   +A +VVNQ   +DL RI    GEEK + ++A  I + R+SAP +TT 
Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +  + +    HPA R FQA+RI VN+E+      L  A   +  GG + V+
Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S       ++    +      + IT+K +VP+ E++  N R+R
Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIVPSDEELEVNNRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++  E
Sbjct: 301 SAKLRVVEKINDKGRE 316


>gi|153938691|ref|YP_001390802.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           Langeland]
 gi|263446093|sp|A7GDE2|RSMH_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152934587|gb|ABS40085.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           Langeland]
 gi|295318872|gb|ADF99249.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           230613]
          Length = 309

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKEKLKDYENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|229104481|ref|ZP_04235148.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-28]
 gi|228678923|gb|EEL33133.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-28]
          Length = 310

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPPLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|299534665|ref|ZP_07047997.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus fusiformis ZC1]
 gi|298730038|gb|EFI70581.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus fusiformis ZC1]
          Length = 316

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  V +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y E+ +   + F  L++       K VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKIRLAPYIERVTFIHSNFRYLKEELLAHGIKQVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +   +ASDVVNQ   +DL RI    GEEK + ++A  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQTATLTASDVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKIAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +  + +    HPA R FQA+RI VN+E+      L  A   +  GG + V+
Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S       ++    +      + IT+K ++P+ E++A N R+R
Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIIPSDEELAVNNRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++  E
Sbjct: 301 SAKLRVVEKINDKGRE 316


>gi|167751501|ref|ZP_02423628.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702]
 gi|167655309|gb|EDR99438.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702]
          Length = 308

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 172/306 (56%), Gaps = 4/306 (1%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72
                H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV 
Sbjct: 2   SEKPIHIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVK 61

Query: 73  CGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +E ++DY       + +TF +  D +    VDGV+ DLGVSS Q+D  +RGFS+ +  
Sbjct: 62  AAEEKLKDYPHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDA 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L
Sbjct: 122 PLDMRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V        +P  ++FQA+RI VN E++EL +G+  A + L  GG L +++FH
Sbjct: 182 AEIVKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSQGGRLAIITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           S+EDR+VK  F                        +++ +K V  ++E++A N RSRSAK
Sbjct: 242 SIEDRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAK 301

Query: 311 LRAGMR 316
           LR   +
Sbjct: 302 LRVIEK 307


>gi|205373089|ref|ZP_03225894.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4]
          Length = 311

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +H  VLL + +  L   P  + +D T G  G+S         G ++ A D+D  A+  
Sbjct: 1   MFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  Y ++ +  ++ F  L+  + +    GVDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   G +SA +VVN+ + + L RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 APLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEAAREVNPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +    +    HPA R FQA+RI VN+E+       +   + L  GG + V+
Sbjct: 181 ELVELIKEGIPAPARRKGGHPAKRIFQAIRIAVNDELTAFEDSAKDGIQLLHKGGRMSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S          I    +    + +T+K ++P+ E++A N RSR
Sbjct: 241 TFHSLEDRICKNLFKEYSKGPELPPGLPIIPEGYEPKLKIVTRKPILPSDEELAHNNRSR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|289423186|ref|ZP_06425001.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius
           653-L]
 gi|289156517|gb|EFD05167.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius
           653-L]
          Length = 311

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 173/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               HV VLL++ I  LN  P    +D T G  G+S+   K       +I  D+D  A++
Sbjct: 1   MEFKHVSVLLDECIDNLNINPDGTYVDCTMGGAGHSKEIAKRLGENGRLICFDQDINAIN 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129
             +E + ++K++  L  + F  +++ + ++ +D +   + DLGVSS Q+D   RGFS+  
Sbjct: 61  VAKERLAEFKDRVILVHSNFENIKEELLERNIDSIDGVLADLGVSSHQLDEAFRGFSYMN 120

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM   + +SA DVVN  + +DL RI+   GEE  ASRIA  IV+ R+     TT
Sbjct: 121 DASLDMRMDDRNSMSAWDVVNTYSQEDLHRIIKDYGEENWASRIAQFIVEERKEKDINTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +    + +  HPA R+FQA+RI VNNE+  + + +  +   +  GG + +
Sbjct: 181 FELVDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVIKKMIDDSVSMMNPGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  +   S   +    +   S    +  + IT+K ++P+++++  N RS
Sbjct: 241 ITFHSLEDRIVKNEYKYLSLDCICPPELPFCSCDKVSEVKIITRKPILPSKQEIEVNPRS 300

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 301 RSAKLRVAEK 310


>gi|42559481|sp|Q8GE08|RSMH_HELMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27262272|gb|AAN87417.1| methyltransferase [Heliobacillus mobilis]
          Length = 312

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLLE+V+  L P P  + LD T G GG+S +  +       +I LD+DP A++  + 
Sbjct: 5   HIPVLLEEVLEALQPRPDGLYLDGTVGGGGHSAAILEKTAGQGRLIGLDQDPRALAAARI 64

Query: 77  TMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  + +Q +L ++ F QL    ++      +DG++ D+GVSS Q+D  +RGF+++   P
Sbjct: 65  KLEKFADQVTLVRSNFRQLGSVVEELGQKGKIDGILLDIGVSSHQLDEAERGFTYRAEAP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQD 190
           LDMRM+  G ++A+ ++N+    ++ RIL   GEE+ + RIA  I  +R +     TT  
Sbjct: 125 LDMRMNPDGAVTAAQILNEYPEGEIFRILWEYGEERWSKRIAQFIVNRRTEQPLASTTDL 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +  +       ++    HPA R+FQALRI VN+E+  L + L +A  AL   G L V+SF
Sbjct: 185 VDVIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALQEALPAALDALAPSGRLAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK FFA ++        M        A  + IT+K +  ++E++  N RS+SA
Sbjct: 245 HSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKIITRKPITGSEEELKINPRSQSA 304

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 305 KLRVAQKI 312


>gi|170755383|ref|YP_001781092.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str.
           Okra]
 gi|263446089|sp|B1IKR0|RSMH_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169120595|gb|ACA44431.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKEKLKDYENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|71082740|ref|YP_265459.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762838|ref|ZP_01264803.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|88909208|sp|Q4FPN5|RSMH_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71061853|gb|AAZ20856.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718640|gb|EAS85290.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 336

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/336 (36%), Positives = 185/336 (55%), Gaps = 8/336 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           M + I   + +H PVLL ++I+++ P  G   +D TFG GGY++       + VIALDRD
Sbjct: 1   MIATIIPDVRNHYPVLLSEIISIITPQYGGTFIDCTFGQGGYTKRILNFPETKVIALDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
             +    QE    ++++       FSQL +       +  V+FDLG S  QI    +G S
Sbjct: 61  SESSIKAQELQNSFEDRLLFKNIKFSQLNNLKLKHENIKAVIFDLGYSLNQIKDPKKGLS 120

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F   G L+M+M  +  SA + +NQ + K+LT+I    G+E  + RIAH IV+ R      
Sbjct: 121 FDSIGELNMKMGINEFSAKEAINQLDEKELTKIFKYFGDEADSKRIAHNIVEDRSKREIT 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T + +  +  ++    +N + H AT+ FQALRIFVN EI EL  GL +A K +K  G++ 
Sbjct: 181 TEELVRII--ESSKRKRNYKTHSATKIFQALRIFVNKEISELIYGLINAAKVVKKDGVIA 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLED++VK FF S S      RHM  +     +F+S+ KK +VP+ +++  N  S
Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRHMPKTEEKLNLFKSVIKKPIVPSDKEIRENPPS 298

Query: 307 RSAKLRAGMRTVERSIED----DSFVHLPRLPTLSQ 338
           RSAKLR  ++  +    +    D F HL  +  LS+
Sbjct: 299 RSAKLRYVIKKEDFFDFETDILDKFKHLIDIENLSK 334


>gi|291484065|dbj|BAI85140.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. natto
           BEST195]
          Length = 311

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++ + ++    VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   SA +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S        +           + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|321315277|ref|YP_004207564.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5]
 gi|320021551|gb|ADV96537.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5]
          Length = 311

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++ + ++    VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   +A +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S        +           + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|311068034|ref|YP_003972957.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942]
 gi|310868551|gb|ADP32026.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942]
          Length = 311

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  L+  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLDIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  YK Q  L ++ F  L+D + ++    +DGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLSGYKGQLILIKSNFRYLKDCLNEQGITEIDGVLFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSAPLTAKEVVNEWRYEDLVRIFFRYGEEKFSKQIARKIEEARSKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +           + IT+K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRICKATFKEMSSLPELPPGLPVIPEEFEPELKLITRKPITASEEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|322805771|emb|CBZ03336.1| rRNAsmall subunit methyltransferase H [Clostridium botulinum H04402
           065]
          Length = 309

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     V +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +    VDG++ DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKEKLKDYENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT 
Sbjct: 121 APLDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCRKEPQIKIITKKPIEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 301 AKLRVCRKI 309


>gi|153953806|ref|YP_001394571.1| S-adenosyl-methyltransferase MraW [Clostridium kluyveri DSM 555]
 gi|219854422|ref|YP_002471544.1| hypothetical protein CKR_1079 [Clostridium kluyveri NBRC 12016]
 gi|263447433|sp|B9E0V5|RSMH_CLOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146346687|gb|EDK33223.1| MraW [Clostridium kluyveri DSM 555]
 gi|219568146|dbj|BAH06130.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 309

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+PVLL++ I  LN     V +D T G GG+S    K       +IA+D+D  A++
Sbjct: 1   MEFKHIPVLLKETIDSLNIKQDGVYVDCTLGGGGHSLEILKRLSDKGKLIAIDQDISAIN 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++++K         F  +Q  + +     VDG++ DLGVSS Q+D G RGFS+ K
Sbjct: 61  WSEERLKNFKN-IIYVHDNFYNIQQILKELKIDKVDGIIMDLGVSSYQLDEGKRGFSYMK 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA ++VNQ N ++L RI+   GEE  + RI+  IVK R+ +P  TT
Sbjct: 120 DAPLDMRMNRDSSLSAYEIVNQYNEEELCRIIRDYGEENFSRRISKFIVKAREESPISTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  +I+K +        HPA R+FQA+RI VN E++ L + +      L  GG + ++
Sbjct: 180 LQLVGIIKKAIPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR++K  F                      + + + KK +VPT+E+ + N RS+
Sbjct: 240 TFHSLEDRIIKSKFKMLENPCTCPADFPICICGKKPIVKIVNKKPIVPTEEEKSINPRSK 299

Query: 308 SAKLRAGMRT 317
           S+KLR   R 
Sbjct: 300 SSKLRIAERI 309


>gi|291557117|emb|CBL34234.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum V10Sc8a]
          Length = 308

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 174/306 (56%), Gaps = 4/306 (1%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72
                H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV 
Sbjct: 2   SEKPIHIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVK 61

Query: 73  CGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +E ++DY       + +TF +  D +    VDGV+ DLGVSS Q+D  +RGFS+ +  
Sbjct: 62  AAEEKLKDYPHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDA 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L
Sbjct: 122 PLDMRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V        +P  ++FQA+RI VN E++EL +G+  A + LKAGG L +++FH
Sbjct: 182 AEIVKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLKAGGRLAIITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           S+EDR+VK  F                        +++ +K V  ++E++A N RSRSAK
Sbjct: 242 SIEDRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAK 301

Query: 311 LRAGMR 316
           LR   +
Sbjct: 302 LRVIEK 307


>gi|299131933|ref|ZP_07025128.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2]
 gi|298592070|gb|EFI52270.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2]
          Length = 333

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 143/330 (43%), Positives = 198/330 (60%), Gaps = 5/330 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +      H+ VL  + +  L P  G + +DATFGAGGYS+   +  G+ VI +DRD  AV
Sbjct: 1   MSTASSRHISVLGREAVEFLAPHAGGIYVDATFGAGGYSKRILEVAGTRVIGIDRDRTAV 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +   + +   + + ++ Q  FS L +         VDG+V D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AEAFDLVERAEGRLTVVQDRFSNLAEVCAAEGAPQVDGIVMDIGVSSMQLDRAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             G LDMRM   G SA+DVV  A+ KDL  I+ I GEE+ +  +A AIVK RQ  P  TT
Sbjct: 121 HDGALDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVKARQDNPIVTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V   + N IHPATR+FQALRIF+N E++EL   L ++E+ALK GG L+VV
Sbjct: 181 KALADIVSSVVRA-RPNEIHPATRTFQALRIFINEELDELQTALHASERALKPGGRLVVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F ASR+ +    RH+         F+ +TK+ VV    + A N R+RS
Sbjct: 240 SFHSLEDRIVKNFLASRAKQGGGSRHLPEVEQIAPSFEILTKRPVVANDNETAVNPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           AKLRA  RT   S  +D     P L ++ +
Sbjct: 300 AKLRAAQRTANPSHHEDMSFDWPTLRSVMK 329


>gi|329770446|ref|ZP_08261828.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis
           M325]
 gi|328836569|gb|EGF86229.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis
           M325]
          Length = 310

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 169/307 (55%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLLE+ I  LN     + +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLEEAIEGLNIKDDGIYVDCTLGGAGHSLEILKKLTTGKLYAFDQDNVALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + +Y ++    ++ F  L++ + +     VDGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KIKLSEYADKVVFIKSNFENLKEKLAEQNVYEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA +VVN+ +  DL RI    GEEK + +IA  I K+R+ AP +TT  
Sbjct: 121 RLDMRMDTDASISAYEVVNEYSYHDLVRIFYRYGEEKFSKQIARNIEKKRELAPIETTFQ 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K GG + V++
Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFENSLEQAIDIVKVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S +      +++    N   +  + IT+K + P+ +++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYAKNKEIPKNLPILPNESLSKLKLITRKPICPSDKELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVAE 307


>gi|210622330|ref|ZP_03293099.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275]
 gi|210154318|gb|EEA85324.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275]
          Length = 311

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
              +HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A++
Sbjct: 1   MEFNHVSVLLNECIDNLNIKPDGVYVDCTMGGAGHSKEIVKRLSSDGLFIGFDQDKNAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E + +Y ++     + F  +++ +       +DGV+ DLGVSS Q+D  DRGFS+ +
Sbjct: 61  TAKERLAEYSDRVKFVHSNFENIKEELEKIGVHKIDGVLADLGVSSHQLDEADRGFSYMQ 120

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      SA +VVN+   ++L +I+   GE+  A RIA  IV+ R   P +TT
Sbjct: 121 DAPLDMRMDVRKDFSAYNVVNEYTEEELAKIIKDYGEDNWAKRIAKFIVEGRAEKPIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +    + +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +
Sbjct: 181 GELVDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMIDDACSIMNPGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   S   +    M        +  + IT+K ++P+ E++  N RS
Sbjct: 241 ITFHSLEDRIVKNEFKYLSLDCVCPPEMPFCQCDKVSEVKVITRKPILPSAEEIEMNPRS 300

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 301 RSAKLRVAEK 310


>gi|257870252|ref|ZP_05649905.1| methyltransferase [Enterococcus gallinarum EG2]
 gi|257804416|gb|EEV33238.1| methyltransferase [Enterococcus gallinarum EG2]
          Length = 319

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  V+L++ +  L   P  + +D T G  G+S           ++ A D+D  A+   +E
Sbjct: 6   HYTVMLKETVDGLAIRPDGIYVDCTLGGAGHSEYLLSQLSEEGHLYAFDQDQKAIDHAKE 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  ++ F  L++ +  +    V GV++DLGVSS Q+D  +RGFS+ +  
Sbjct: 66  RLAPYVAKGMVTFIKSNFRYLKEALQQQGVDQVSGVLYDLGVSSPQLDEAERGFSYHQDA 125

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   +A +VVNQ +   L +I    GEEK + +IA  I + R + P +TT +
Sbjct: 126 PLDMRMDQSAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERTRANKPIETTGE 185

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L+  G + V++
Sbjct: 186 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGVIEESLEQAIDLLEKNGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F + S          I       V + IT+K ++P++E+V+ N RSRS
Sbjct: 246 FHSLEDRIVKSTFKAYSTPKDVPPGLPIIPEEFQPVLKLITRKPLLPSEEEVSENNRSRS 305

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 306 AKLRIAEKMKE 316


>gi|295399706|ref|ZP_06809687.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111775|ref|YP_003990091.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1]
 gi|294978109|gb|EFG53706.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216876|gb|ADP75480.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1]
          Length = 310

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  L+  P    +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLHINPDGTYVDCTLGGGGHSEYLLSQLSEKGRLFAFDQDDMAIEY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y++Q +  +  F  L + +       VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKRLARYEKQVTFIRRNFRFLAEELAARGVHKVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     +A D+VN    + L  I    GEEK + ++A  I + R+    +TT 
Sbjct: 121 APLDMRMNREQPLTAYDIVNHWPYEKLVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L ++I++ +    + +  HPA R FQA+RI VN+E++   + +  A   LK+GG + V+
Sbjct: 181 ELVNIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFQEAITQAIDVLKSGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +      +    + ITKK +VP++E+VA N R+R
Sbjct: 241 TFHSLEDRICKATFKKASQSPQLPPGLPLIPEQYRPTLKMITKKPIVPSEEEVAHNHRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|317057677|ref|YP_004106144.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7]
 gi|315449946|gb|ADU23510.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7]
          Length = 311

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 162/310 (52%), Gaps = 4/310 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H+PVLL + I  L+  P  +  D T G  G+SR   K      +I++DRDP AV+ 
Sbjct: 1   MEFKHIPVLLNECIEGLDIKPDGIYCDGTAGGAGHSREIAKRLTTGRLISVDRDPEAVAV 60

Query: 74  GQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             E +            +   ++   +  +G DG++ DLGVSS Q+D  +RGFS+    P
Sbjct: 61  ATERLSGLPATVVRGNYSELDEIFARLGIEGADGILMDLGVSSYQLDNAERGFSYHTDAP 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G+SA DVVN  + + L RI+   G+EK +  IA  IV+ R+  P +TT +L+
Sbjct: 121 LDMRMSSEGLSARDVVNSYDERTLARIIFEYGDEKFSRNIAKKIVQVREDKPIETTLELA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+  V        +P  ++FQA+RI VN E+E L+  L  A   L AGG L +++FHS
Sbjct: 181 EVIKSAVPQKVRREKNPCKKTFQAIRIEVNAELEHLSIALDKAFDLLNAGGRLCIITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+ F S     +                + IT+K + P+  +   N+R+ SAKL
Sbjct: 241 LEDRLVKQRFKSFCQGCICPPDFPVCVCGRTPRGKLITRKPIEPSDSENEENKRAHSAKL 300

Query: 312 RAGMRTVERS 321
           R   +     
Sbjct: 301 RIIEKIKNDP 310


>gi|187779894|ref|ZP_02996367.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC
           15579]
 gi|187773519|gb|EDU37321.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score =  263 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLLE+ I  LN     + +D T G GG+S+   K       +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLEETIDSLNIKEDGIYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSALK 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E ++DY+    +    +    + + +  + VDG+V DLGVSS Q+D   RGFS+ K 
Sbjct: 61  AAKERLKDYENVIYVHNNFYNIDSILEELDIEKVDGIVMDLGVSSYQLDEASRGFSYMKD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA DVVN    ++L +IL   GEEK + +IA  IV+RR     +TT 
Sbjct: 121 APLDMRMNRDENFSAYDVVNSYGEEELFKILKNYGEEKFSRKIARFIVERRTEKSIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++
Sbjct: 181 ELVEIIKKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              I         + ITKK + P++E+   N RSRS
Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKKPQIKIITKKPMEPSKEEKEINSRSRS 300

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 301 AKLRVCRRI 309


>gi|269926721|ref|YP_003323344.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790381|gb|ACZ42522.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 304

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 185/306 (60%), Gaps = 11/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ IALL+  P    +DAT GAGG++    +       V+ LD DP A+   Q
Sbjct: 1   MHTSVLLDESIALLDIHPNGKYIDATLGAGGHAEKMLERSSPSGRVLGLDADPRAIELAQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ L    F  ++    +      DGV+FDLG+SSMQ+D    GFSF++  P
Sbjct: 61  QRLGRFVGRYVLVHTNFRYIEQAATEHDFNPCDGVLFDLGISSMQVDAWAAGFSFRRDEP 120

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR   + G +A+D++ +++ ++L RI+   GEE ++ +IA AI K  +     T Q +
Sbjct: 121 LDMRFDPTSGKTAADIIRESSEQELARIIWEYGEEPKSRQIARAI-KSSREPIITTVQLV 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++  ++VY  K +RIHPATR+FQALRI VN+E++ L +GL  A + L+ GG L+V+SFH
Sbjct: 180 QAV--ESVYKGKRSRIHPATRTFQALRIAVNDELDALQEGLAGALRVLRVGGRLVVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK F   RS   +     ++ +  H    + +T+K +VP++E+V  N RSRSAK
Sbjct: 238 SLEDRIVKHFMRERSKGCICPPEQLVCTCNHRPEIKVLTRKPIVPSEEEVKVNPRSRSAK 297

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 298 LRAAEK 303


>gi|254500690|ref|ZP_05112841.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11]
 gi|222436761|gb|EEE43440.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 159/327 (48%), Positives = 217/327 (66%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL +V+  L+P PG+V++D TFGAGGYSR   +  + V+ +DRDP A++ GQE + 
Sbjct: 19  HVPVLLNEVLEWLDPQPGEVMVDGTFGAGGYSRKLLERDATVVGIDRDPDAIAGGQELVT 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               +  L    F+ L+ +  + G    DGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  QSDGRLILVPGQFADLETHARESGFDGVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN+  V+DL RI+G+LGEEK+A  +AHAI   R+  PF  T +L++LI+
Sbjct: 139 MEQAGPSAADVVNELPVRDLIRIIGVLGEEKRAPSVAHAIDNARKEKPFSRTLELANLIE 198

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +    K  +IHPATR+FQALRI+VN E+ + AQ L +AE+ LK GG L++VSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAERILKPGGRLVLVSFHSLED 258

Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF  R+  +    RHM      PA F+ +T+K V     +   N R+RSAKLRAG
Sbjct: 259 RIVKRFFQDRTKTRGGGSRHMPEEEVPPATFEILTRKAVEARDMETDANPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   + E D  +H+  +P L+ F G
Sbjct: 319 RRTEAPARELD--IHVAGVPRLAAFHG 343


>gi|182417987|ref|ZP_02949294.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521]
 gi|237667344|ref|ZP_04527328.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378158|gb|EDT75693.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521]
 gi|237655692|gb|EEP53248.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 310

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 165/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               HV VLL + I  LN     + +D T G  G+S    K  S    +I +D+D  A+ 
Sbjct: 1   MEFKHVSVLLNECIDGLNIKEDGIYVDCTLGGAGHSSHILKHLSKNGLLIGIDQDTDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++DY        + F  +   + +   + VDG++ DLGVSS Q+D  +RGFS+ +
Sbjct: 61  AAKERLKDYDN-VKYVHSNFYNIDSILNELGIEKVDGILMDLGVSSYQLDNAERGFSYMQ 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  +  SA  ++N  + ++L +I+   GEEK A RIA+ IV RR   P +TT
Sbjct: 120 DAPLDMRMNRDNDFSAYSIINDYSEEELYKIIRDYGEEKFAKRIANFIVNRRAEKPIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN+E++ L + +      L   G + +
Sbjct: 180 FELVDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKDGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F          R           + + + KK + P++E++  N RS
Sbjct: 240 ITFHSLEDRIVKLKFRELENPCTCPREFPMCICGKKPLVKVLNKKGIAPSKEEIEENPRS 299

Query: 307 RSAKLRAGMRT 317
           RSAK+R   + 
Sbjct: 300 RSAKVRVVEKV 310


>gi|229918544|ref|YP_002887190.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b]
 gi|263447045|sp|C4L5T9|RSMH_EXISA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229469973|gb|ACQ71745.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b]
          Length = 310

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H  VL  + I  LN  P  V +D T G  G+S    K      + A D+D  A++  
Sbjct: 1   MFEHETVLKMESIEGLNIKPDGVYVDCTLGGAGHSEEIAKRLTTGQLYAFDQDDVALAHA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +  Y+ + +  ++ F  L++ +  +    VDGV+FDLGVSS Q+D  +RGFS+    
Sbjct: 61  KERLAPYEGRVTFIKSNFVHLKEELAQRGVTKVDGVLFDLGVSSPQLDEAERGFSYNYDA 120

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      SA  VVN+ +  +L RI    GEEK + +IA  I + R   P +TT +
Sbjct: 121 PLDMRMDRSRDFSAYHVVNEWSFGELARIFFTYGEEKFSKQIARKIEQARADKPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++ +   ++    HPA R+FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 181 LVDLIKEAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVQDAIDLLAVNGRICVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F  RS        +           + IT+K +V ++ ++  NRRSRS
Sbjct: 241 FHSLEDRICKQVFKERSQHPPLPPGLPVIPKEFEPELKLITRKPIVASEGELEDNRRSRS 300

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 301 AKLRVAEK 308


>gi|255656635|ref|ZP_05402044.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-23m63]
 gi|296449909|ref|ZP_06891673.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08]
 gi|296878290|ref|ZP_06902299.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07]
 gi|296261179|gb|EFH08010.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08]
 gi|296430738|gb|EFH16576.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07]
          Length = 311

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A++  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAINTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +       +DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYEGRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R +   +TT +L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKTIETTGELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    + +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++FH
Sbjct: 185 DIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E+V  N RSRSAK
Sbjct: 245 SLEDRIVKNAFKYLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEVEANPRSRSAK 304

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 305 LRVAEKI 311


>gi|197116881|ref|YP_002137308.1| S-adenosyl-methyltransferase MraW [Geobacter bemidjiensis Bem]
 gi|263447558|sp|B5EBP3|RSMH_GEOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|197086241|gb|ACH37512.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter
           bemidjiensis Bem]
          Length = 312

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VL ++V+  L+P  G V +D T G  G++            +I  DRD  A++  +E
Sbjct: 6   HISVLPDEVLQALSPRSGGVYVDGTLGGAGHAGLILTASAPDGQLIGFDRDEEAIAVARE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +  +  +    F+ +   + +    G+DG V DLGVSS Q+D  +RGFSF    PL
Sbjct: 66  RLQVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G SA+D+VN     +L RI+   GEE+ A R+A  IVK R   P +TT  L 
Sbjct: 126 DMRMDRSSGQSAADLVNTLPEGELYRIISEYGEERWAKRVASFIVKARDERPIETTLQLV 185

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++  +K   R+HPATR+FQALRI VN E++ L +GL      LK GG   V+SFH
Sbjct: 186 DVIKGSIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLEGLLSLLKQGGRGAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F + +      +   I        F+ +T+K +   + +VA N RSRSAK
Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICICGRVPRFKLVTRKPITAGEAEVAANPRSRSAK 305

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 306 LRVVEKI 312


>gi|331269345|ref|YP_004395837.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925]
 gi|329125895|gb|AEB75840.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925]
          Length = 309

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 170/306 (55%), Gaps = 7/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSHILKRLSKRGKLIGIDQDVNALKAAK 63

Query: 76  ETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +++Y     +    +  + + D +  + VDG++ DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  ERLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAML 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA +VVN+ + ++L RI+   GEE+ A +IA AIVK+R+  P +TT DL 
Sbjct: 124 DMRMNTEESISAYNVVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLDLV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+  +        HPA ++FQA+RI VN+E+E L + +    K L   G + V++FHS
Sbjct: 184 KIIKNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNLDGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F          +           V + IT+K + P++++   N RSRS+KL
Sbjct: 244 LEDRIVKTKFKKLENPCTCPKEFPVCICGMKPVVKVITRKPLEPSEDEKENNSRSRSSKL 303

Query: 312 RAGMRT 317
           R   + 
Sbjct: 304 RVAQKI 309


>gi|295696471|ref|YP_003589709.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912]
 gi|295412073|gb|ADG06565.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912]
          Length = 315

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 189/311 (60%), Gaps = 10/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL +V+A+L P PG + +D T G GG++++  +       +I +D+D  A++  +E
Sbjct: 5   HEPVLLHEVLAILQPRPGGLYVDGTLGGGGHAQAILEAAAPDGRLIGIDQDDEALTASKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y  + +  +  F ++++ +      +GVDG++ D+G+SS Q+D  +RGFS++   P
Sbjct: 65  RLTPYGGRVTTVKGNFRRIKEILWGLGVIEGVDGILLDVGLSSPQVDEAERGFSYRSDAP 124

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  SG  +A D+VN     +L R++   GEE+ A+RIA AIV+RRQ    +TT +L
Sbjct: 125 LDMRMDLSGTLTARDIVNSWPEGELARVVRDYGEERWAARIAKAIVRRRQRQAIETTGEL 184

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + L+++ +   ++ +  HPA R+FQALRI VN+E+  L +G++ A + L+ GG L V++F
Sbjct: 185 AELVKEAIPAAARRHGPHPARRTFQALRIAVNDELGALEEGVKGALEVLRPGGRLAVIAF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+  A  +   +      + +       + I ++ +VP  E++A N R+RSA
Sbjct: 245 HSLEDRIVKRILAEEARSCICPPEAPVCTCGRRPRVRLIGRRPIVPGPEELARNPRARSA 304

Query: 310 KLRAGMRTVER 320
           KLR   R  + 
Sbjct: 305 KLRGAERLAQE 315


>gi|255101826|ref|ZP_05330803.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-63q42]
 gi|255307693|ref|ZP_05351864.1| S-adenosyl-methyltransferase [Clostridium difficile ATCC 43255]
          Length = 311

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 173/307 (56%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +       +DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT +L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    + +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++FH
Sbjct: 185 DVIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E++  N RSRSAK
Sbjct: 245 SLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSAK 304

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 305 LRVAEKI 311


>gi|218133493|ref|ZP_03462297.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990868|gb|EEC56874.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC
           43243]
          Length = 312

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLL++ I  LN  P  + +D T G GG+S    K    G  +I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLDETIESLNIKPNGIYVDGTLGGGGHSYEIAKRLTDGGRLIGIDQDEDAIR 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E + ++ ++ ++ +  +  +   + +     VDG++ D+GVSS Q+D  +RGF++++
Sbjct: 61  AAKERLSEFADRVTIVRDNYCNMPKVLDELGVSKVDGILLDIGVSSYQLDEAERGFTYKQ 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN  + +DL RI+   GE+K A  IA  IV+ RQ  P +TT
Sbjct: 121 DAPLDMRMDQRQEMTAKDIVNGYSEEDLYRIIRDYGEDKFAKNIAKHIVQARQIKPVETT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +         HPA ++FQA+RI +N E+E L + + +    L   G L +
Sbjct: 181 FELDEIIKAAIPMKFRATGGHPAKKTFQAIRIELNRELEVLDESIDAMTDLLNDNGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                        + IT+K +VP +E++  N+R+
Sbjct: 241 ITFHSLEDRIVKTRFRKNENPCTCPPDFPVCVCGKKPKGKVITRKPIVPDEEELEENKRA 300

Query: 307 RSAKLRAGMR 316
           +S+KLR   R
Sbjct: 301 KSSKLRVFER 310


>gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
 gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
          Length = 345

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 135/321 (42%), Positives = 192/321 (59%), Gaps = 5/321 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PV+L +V+A L P      +D TFGAGGY+R         V+A+DRDP A++ G +
Sbjct: 17  ARHLPVMLAEVLAHLAPKDAGRYVDGTFGAGGYTRGILNAADCRVLAIDRDPTAIAAGAD 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   + +L    FS+L     +      DGVV D+GVSSMQ+D  +RGFSF++ GPL
Sbjct: 77  LVAEAAGRLTLVNDRFSRLDAVAQEHDFSPLDGVVLDIGVSSMQLDQAERGFSFRRDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  +G SA+D+V   +   L  ++  LGEE+ +  IA AIVK R  +P   T  L+ 
Sbjct: 137 DMRMGDTGPSAADLVATLDEVQLAHLIWSLGEERHSRPIARAIVKARDESPITRTAQLAE 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ + + + K   +HPATR+FQALRI VN E+ EL Q L +AE+AL  GG L+VV+FHSL
Sbjct: 197 IVSR-IVWQKPGEMHPATRTFQALRIAVNEELSELVQALVAAERALAPGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK F ++R+    A RH+  +      F+ + K VV P  ++VA N R+RSAKLRA
Sbjct: 256 EDRIVKTFLSNRAKAPSASRHLPQAEGPEPAFRLVAKGVVEPGPDEVAGNPRARSAKLRA 315

Query: 314 GMRTVERSIEDDSFVHLPRLP 334
             RT   +      + L   P
Sbjct: 316 AERTNAPAHPGGDLMGLLPAP 336


>gi|212639664|ref|YP_002316184.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Anoxybacillus flavithermus
           WK1]
 gi|263446761|sp|B7GGJ0|RSMH_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212561144|gb|ACJ34199.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Anoxybacillus flavithermus
           WK1]
          Length = 313

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 163/306 (53%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL++ +  LN       +D T G  G+S            + A D+D  A+   Q+
Sbjct: 7   HVTVLLKETVDGLNIKKDGTYVDCTLGGAGHSEYLLSQLSPEGRLFAFDQDDIAIRHAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y+ QF++ ++ F  L+          VDG++FDLGVSS Q+D  +RGFS+Q   PL
Sbjct: 67  RLERYRGQFTIIKSNFRYLKQQLALYGVHEVDGILFDLGVSSPQLDMPERGFSYQHEAPL 126

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A DVVN    + L +I    GEEK +  IA  I + R+  P +TT +L+
Sbjct: 127 DMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQTRKQKPIETTTELA 186

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +    +    HPA R FQA+RI VN+E+    + +  A   LK GG + V++FH
Sbjct: 187 EVIKEAIPAPARRTGGHPAKRVFQAIRIAVNDELRAFEEAIEQAIDLLKPGGRISVITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+ K  F   S          I  + +    + ITKK +VP++E++  N R+RSAK
Sbjct: 247 SLEDRICKIAFKQASETPHLPPGLPIIPDEYKPKLKIITKKPIVPSEEELQHNHRARSAK 306

Query: 311 LRAGMR 316
           LR   +
Sbjct: 307 LRIAEK 312


>gi|254976251|ref|ZP_05272723.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-66c26]
 gi|255093637|ref|ZP_05323115.1| S-adenosyl-methyltransferase [Clostridium difficile CIP 107932]
 gi|255315386|ref|ZP_05356969.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-76w55]
 gi|255518051|ref|ZP_05385727.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-97b34]
 gi|255651167|ref|ZP_05398069.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-37x79]
 gi|260684233|ref|YP_003215518.1| S-adenosyl-methyltransferase MraW [Clostridium difficile CD196]
 gi|260687892|ref|YP_003219026.1| S-adenosyl-methyltransferase MraW [Clostridium difficile R20291]
 gi|306521014|ref|ZP_07407361.1| S-adenosyl-methyltransferase MraW [Clostridium difficile QCD-32g58]
 gi|260210396|emb|CBA64792.1| S-adenosyl-methyltransferase [Clostridium difficile CD196]
 gi|260213909|emb|CBE05954.1| S-adenosyl-methyltransferase [Clostridium difficile R20291]
          Length = 311

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +       +DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT  L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGKLV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    + +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++FH
Sbjct: 185 DIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNKGGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E++  N RSRSAK
Sbjct: 245 SLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSAK 304

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 305 LRVAEKI 311


>gi|52080116|ref|YP_078907.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC
           14580]
 gi|52785490|ref|YP_091319.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC
           14580]
 gi|319646109|ref|ZP_08000339.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           sp. BT1B_CT2]
 gi|59799852|sp|Q65JY8|RSMH_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52003327|gb|AAU23269.1| putative methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52347992|gb|AAU40626.1| YlxA [Bacillus licheniformis ATCC 14580]
 gi|317391859|gb|EFV72656.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           sp. BT1B_CT2]
          Length = 312

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 168/312 (53%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H  VLL++ +  LN       +D T G  G+S            ++A D+D  A+  
Sbjct: 1   MFEHTTVLLKETVDGLNVKEDGTYVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DY+ Q    ++ F  L+D + +     VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLADYEGQVVFIKSNFRYLKDRLNEIGITKVDGVLFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S G+SA +VVN+   +DL +I    GEEK + +IA  I K R+ +P +TT 
Sbjct: 121 APLDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKAREQSPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    + +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELRVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +           + + +K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRICKSTFKDMSSPPELPHGLPVIPKEFEPKLKLVNRKPITASEEELEHNNRAR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 301 SAKLRIAEKARE 312


>gi|296331089|ref|ZP_06873563.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674244|ref|YP_003865916.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151733|gb|EFG92608.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412488|gb|ADM37607.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 311

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDMALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++ + ++    VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEALSDYKGQLILIKSNFRYLKECLKEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   +A +VVN    +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLTAKEVVNDWRYEDLVRIFFKYGEEKFSKQIARKIEEARIKSPIQTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    + +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S        +           + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKSTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|164686379|ref|ZP_02210409.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM
           16795]
 gi|164601981|gb|EDQ95446.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM
           16795]
          Length = 311

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 169/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
              +HV VLL++ I  LN     V +D T G  G+S+   K  S     I  D+D  A++
Sbjct: 1   MEFNHVSVLLDECIDNLNIKEDGVYVDCTMGGAGHSKEIVKRLSKDGLFIGFDQDKNAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E + +Y ++     + FS +++ +       +DGV+ DLGVSS Q+D  DRGFS+  
Sbjct: 61  TAKERLAEYSDRVRFVHSNFSNIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMH 120

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      SA DVVN    + L +I+   GE+  A RIA  IV+ R+  P + T
Sbjct: 121 DAPLDMRMDIRKPFSAYDVVNTYTEEQLAKIIKDYGEDNWAKRIAKFIVETREEKPIEKT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +    + +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +
Sbjct: 181 GELVDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVINKMIDDAVSMMNKGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   S   +      I      +  + IT+K ++P++E+V  N RS
Sbjct: 241 ITFHSLEDRIVKNEFKELSLSCVCPPELPICRCDKVSEVKVITRKPILPSKEEVEANPRS 300

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 301 RSAKLRVAEK 310


>gi|126700272|ref|YP_001089169.1| S-adenosyl-methyltransferase MraW [Clostridium difficile 630]
 gi|123174036|sp|Q182Z2|RSMH_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115251709|emb|CAJ69544.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Clostridium difficile]
          Length = 311

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +       +DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT +L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    +    HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++FH
Sbjct: 185 DVIKKAIPKKARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E++  N RSRSAK
Sbjct: 245 SLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSAK 304

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 305 LRVAEKI 311


>gi|225019362|ref|ZP_03708554.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum
           DSM 5476]
 gi|224947993|gb|EEG29202.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum
           DSM 5476]
          Length = 307

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 7/307 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLLE+ +  LN  P  + +D T G  G+SR   K      + + DRDP A++ 
Sbjct: 1   MEFQHTSVLLEECLEGLNIRPDGIYVDGTTGGAGHSREIAKRLTTGRLYSFDRDPDAIAV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  Y     L  A FS +   +       VDGV+ DLGVSS Q+D  +RGFS+   
Sbjct: 61  ASERLAQYPCS-ELVHANFSTMDAELAKRGVNQVDGVLLDLGVSSFQLDTAERGFSYLND 119

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           G LDMRMS SG+SA ++VN    ++L RI+   GEEK    IA  IV++R+  P +TT+ 
Sbjct: 120 GILDMRMSKSGLSAREMVNTYPAEELARIIRDYGEEKYYYSIAKNIVRQREVQPIETTRQ 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           LS ++  ++        +P+ R+FQA+RI VN E++ L+QGL +A   L +GG L+V++F
Sbjct: 180 LSEIVNSSMPAKARREKNPSKRTFQAIRIAVNEELDSLSQGLENAFSVLSSGGRLVVITF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+F A      +           +    + + KK ++P+++++A NRRS+SA
Sbjct: 240 HSLEDRIVKQFNAKMCQGCICPPDFPICVCNNRPKARLVNKKPILPSEQELAHNRRSQSA 299

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 300 KLRILEK 306


>gi|326791423|ref|YP_004309244.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM
           5427]
 gi|326542187|gb|ADZ84046.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM
           5427]
          Length = 311

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 173/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VLL + I  L   P    +D T G  G++R  C       + I +D+D  A++
Sbjct: 1   MKFEHVSVLLNECIEGLAIKPNGTYVDGTLGGAGHARVVCNYLTEEGHFIGIDQDKNALA 60

Query: 73  CGQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++D K + S+  + F    ++ + +  +GVDG++ DLGVSS Q+D   RGFS+  
Sbjct: 61  VSTERLKDVKPKVSIVNSNFEKVAEVLEVLGIEGVDGMLIDLGVSSHQLDEPSRGFSYMH 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   G  +A +VVN    ++L RI+   GEEK A RIA  IV+ R+  P +TT
Sbjct: 121 DAPLDMRMDQDGAYTAYEVVNDMAEEELFRIIKEYGEEKWAKRIAQFIVEERKQKPIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +    + +  HPA R+FQA+RI VN E+E +   +++    L +GG L +
Sbjct: 181 YELVEVIKKAIPQGARKDGPHPAKRTFQAIRIAVNRELEIIEPTIKAIVDKLNSGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F +         H  I       + + IT+K ++P+ E++  N RS
Sbjct: 241 ITFHSLEDRIVKHAFRNLENPCTCAPHIPICVCGKKPLVKVITRKPILPSDEEIEINPRS 300

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 301 RSAKLRIIEK 310


>gi|83858922|ref|ZP_00952444.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853745|gb|EAP91597.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 334

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 144/331 (43%), Positives = 196/331 (59%), Gaps = 9/331 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCG 74
           +   H+PV+L++V+  L P  G + +D TFGAGGY+R         V+ +DRDP A    
Sbjct: 2   SDQPHIPVMLDEVLTHLQPRDGGLYVDGTFGAGGYTRGILGAADCRVLGIDRDPSARETA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +     YK +F+     FS ++D +      GVDGVV DLGVSSMQ+D  +RGFSFQK G
Sbjct: 62  ERMKPAYKGRFAFGFGPFSMMEDIIEAAGSSGVDGVVLDLGVSSMQLDQAERGFSFQKDG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS SG +A+D VN     +L  I  + GEE+ A R A+AIV+ R+  P   T  L
Sbjct: 122 PLDMRMSQSGPTAADAVNHLEAHELAAIFKVYGEERHARRAANAIVRAREVEPITRTLVL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + V   K  RIHPATRSFQ LRI+VN+E+ EL +GL++AE+ L+  G L+VV+FH
Sbjct: 182 ADIIGRAV-GGKPGRIHPATRSFQGLRIYVNDELGELVRGLQAAERVLRPAGRLVVVTFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F   R+G         P         F  ++KK +  T+ + A N RSRSA
Sbjct: 241 SLEDRIVKTFLRERAGLTGGGSRHQPEIQAERDPSFALVSKKALSATEAEAAENPRSRSA 300

Query: 310 KLRAGMRTVERSI--EDDSFVHLPRLPTLSQ 338
           KLRA +R    +   ED+ F  +P    L +
Sbjct: 301 KLRAAIRNEHEAWPREDEGFAGVPSYRRLEE 331


>gi|39998167|ref|NP_954118.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA]
 gi|42559425|sp|P60396|RSMH_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39985113|gb|AAR36468.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA]
 gi|298507105|gb|ADI85828.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter
           sulfurreducens KN400]
          Length = 311

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H PV+  +V+  L+P PG V +D T G  G++R   +       +I  DRDP A+ 
Sbjct: 1   MTFSHRPVMPAEVLEYLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E +  + E+F      FS++   + +    GVDG + D+GVSS Q+D  +RGFSF  
Sbjct: 61  VARERLALFGERFRPVPGNFSEMGRVLAELGVDGVDGFLLDVGVSSHQLDTAERGFSFLT 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     +A+D+VN  N  +L RI+   GEE+ A RIA  IVK R   P + T
Sbjct: 121 DAPLDMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKARVDGPIERT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  +       RIHPATR+FQALRI VN+E+  L +GL SA   L+ GG  +V
Sbjct: 181 LQLVDIIKGAIPRGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGLLRPGGRGVV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK  F   +      + +           + +T + VV    +VA N R+
Sbjct: 241 ISFHSLEDRIVKTMFRRYAQGCTCPKELPRCVCGGVPRLRILTGRPVVAGDVEVAENPRA 300

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 301 RSAKLRAAEK 310


>gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
 gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
          Length = 347

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 166/326 (50%), Positives = 215/326 (65%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L P  G VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRVMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  + +L ++ FS L D V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  QFPGRLNLVESRFSALDDAVSTVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+DVVN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK++FA R+G     RH+  ++   A F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLASFTPAIKGAVGPTAEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
            RT    +EDD S   LP+LP  ++ 
Sbjct: 319 TRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|115524112|ref|YP_781023.1| methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115518059|gb|ABJ06043.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           BisA53]
          Length = 400

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 150/336 (44%), Positives = 200/336 (59%), Gaps = 9/336 (2%)

Query: 11  SAIHH-TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDP 68
           +++       H+ VL  + +  L P  G V +DATFGAGGYSR+   + G+ VI +DRD 
Sbjct: 67  ASMSPPESVRHISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDR 126

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125
            A++ G + +     + +L ++ FSQL +    +    VDGVV D+GVSSMQ+D  +RGF
Sbjct: 127 TAIAGGFDLVEQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGF 186

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF+  GPLDMRM   G SA++V+  A+  DL  I  I GEE+ +  +A AIV  R   P 
Sbjct: 187 SFRFDGPLDMRMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPI 246

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+ L+ L+ K V+  K   IHPATRSFQ LRIFVN E++EL   L +AE+ LK GG L
Sbjct: 247 VTTKALADLVSKVVHS-KPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRL 305

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +VVSFHSLEDR+VK FFA R       RH          F  +TK+ V P+ E+ A N R
Sbjct: 306 VVVSFHSLEDRIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPR 365

Query: 306 SRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           +RSAKLRAG RT   +  +     LP  PTL+   G
Sbjct: 366 ARSAKLRAGERTAAPAQPE---APLPHWPTLASVMG 398


>gi|307244139|ref|ZP_07526257.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM
           17678]
 gi|306492510|gb|EFM64545.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM
           17678]
          Length = 311

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 174/310 (56%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VLL + I  LN  P  V +D T G  G+SR   K       ++  D+D  A++
Sbjct: 1   MEFNHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSREIAKRLSDKGRLVCFDQDINAIN 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ +++Y ++  L  + F  L++ +       +DGV+ DLGVSS Q+D  DRGFS+  
Sbjct: 61  VAKDRLKEYNDRVVLVHSNFENLKEELESRGIFKIDGVLADLGVSSHQLDEADRGFSYMH 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     +SA  VVN+ + +DL  I+   GEEK A RIA  IVK R      TT
Sbjct: 121 DARLDMRMDDRASMSAWQVVNEYSQEDLYTIIKDYGEEKWAKRIAEFIVKERADHSIDTT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            DL  +I+K +   ++ +  HPA R+FQA+RI VNNE+  + + +R A   +  GG + +
Sbjct: 181 FDLVDVIKKAIPKGARIDGPHPAKRTFQAIRIEVNNELGVINKMIRDAVSMMNKGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +   +    +        +  + IT+K ++P++E+V FN RS
Sbjct: 241 ITFHSLEDRIVKNEFRDLNKDCICPPELPFCQCNKKSELKIITRKPILPSEEEVDFNPRS 300

Query: 307 RSAKLRAGMR 316
           RS+KLR G +
Sbjct: 301 RSSKLRVGEK 310


>gi|255527766|ref|ZP_05394619.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296186678|ref|ZP_06855080.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296187067|ref|ZP_06855466.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|255508553|gb|EET84940.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296048354|gb|EFG87789.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296048715|gb|EFG88147.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
          Length = 309

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLLE+ I  LN     + +D T G GG+S    K       +I +D+D  A+ 
Sbjct: 1   MEFKHVSVLLEETIDALNVKEDGIYVDCTLGGGGHSYEILKRLSPKGRLIGIDQDTAALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + ++ +    +     F  + + + +   + VDG++ DLGVSS Q+D  +RGFS+ K
Sbjct: 61  AAGDRLKQFNN-VTYVHNNFYNIDEILQELNIEKVDGIMMDLGVSSYQLDEAERGFSYMK 119

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA D+VN  + + + +I+   GE+  A RIA  IV+RR+    +TT
Sbjct: 120 DAPLDMRMNRDSSTSAYDIVNFYSEEQIFKIIKEYGEDNFAKRIAKFIVQRREKETIKTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L  +I++ +        HPA R+FQA+RI VN E++ L + +  +   L  GG + ++
Sbjct: 180 LELVDIIRQAIPARFQKDGHPAKRTFQAIRIEVNRELQILDKAVEDSVNRLNKGGRIAII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR +K  F                      + + I+KK + P+ E+   N RS+
Sbjct: 240 TFHSLEDRKIKVKFKQLENPCTCPPDFPMCVCGKKPLVKLISKKPIEPSIEESENNSRSK 299

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 300 SAKLRVAERI 309


>gi|254564005|ref|YP_003071100.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254271283|emb|CAX27295.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           DM4]
          Length = 351

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/331 (44%), Positives = 196/331 (59%), Gaps = 12/331 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  
Sbjct: 16  EQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 75

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G + +     +  L Q  F  L        +   D VV D+GVSSMQID   RGFSF++ 
Sbjct: 76  GADLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWVVLDIGVSSMQIDEAQRGFSFRQD 135

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  
Sbjct: 136 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQ 195

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F
Sbjct: 196 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 255

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRS
Sbjct: 256 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 315

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           AKLRAG RT   +        L  + TL+  
Sbjct: 316 AKLRAGERTDAPAPPP-----LSAIETLASL 341


>gi|126649733|ref|ZP_01721969.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905]
 gi|126593452|gb|EAZ87397.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905]
          Length = 316

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 168/316 (53%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  V +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVHQLSDKGRLICFDQDMTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y E+ +   + F  L++       + VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +   +A +VVNQ   +DL RI    GEEK + ++A  I + R+SAP +TT 
Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +  + +    HPA R FQA+RI VN+E+      L  A   +  GG + V+
Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S       ++    +      + I++K ++P+ E++  N R+R
Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLISRKPILPSDEELEVNNRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++  E
Sbjct: 301 SAKLRVVEKINDKGRE 316


>gi|163854037|ref|YP_001642080.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1]
 gi|263456431|sp|A9VW37|RSMH_METEP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163665642|gb|ABY33009.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1]
          Length = 351

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/331 (44%), Positives = 196/331 (59%), Gaps = 12/331 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  
Sbjct: 16  AQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 75

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G + +     +  L Q  F  L        +   D VV D+GVSSMQID   RGFSF++ 
Sbjct: 76  GADLVTASGGRLRLVQGRFGDLDTLIADQDEPQADWVVLDIGVSSMQIDEAQRGFSFRQD 135

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  
Sbjct: 136 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQ 195

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F
Sbjct: 196 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 255

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRS
Sbjct: 256 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 315

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           AKLRAG RT   +        L  + TL+  
Sbjct: 316 AKLRAGERTDAPAPPP-----LSAIETLASL 341


>gi|218532980|ref|YP_002423796.1| S-adenosyl-methyltransferase MraW [Methylobacterium
           chloromethanicum CM4]
 gi|263456414|sp|B7KU77|RSMH_METC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218525283|gb|ACK85868.1| S-adenosyl-methyltransferase MraW [Methylobacterium
           chloromethanicum CM4]
          Length = 353

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/331 (44%), Positives = 197/331 (59%), Gaps = 12/331 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  
Sbjct: 18  AQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 77

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G + +  +  +  L Q  F +L        +   D VV D+GVSSMQID   RGFSF++ 
Sbjct: 78  GADLVNAFGGRLRLVQGRFGELDTLIADQNEAQADWVVLDIGVSSMQIDEAQRGFSFRQD 137

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP  TT  
Sbjct: 138 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIVTTAQ 197

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F
Sbjct: 198 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 257

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRS
Sbjct: 258 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 317

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           AKLRAG RT   +        L  + TL+  
Sbjct: 318 AKLRAGERTDAPAPPP-----LSAIETLASL 343


>gi|148257427|ref|YP_001242012.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. BTAi1]
 gi|263445839|sp|A5EPL2|RSMH_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146409600|gb|ABQ38106.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. BTAi1]
          Length = 331

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 143/333 (42%), Positives = 193/333 (57%), Gaps = 7/333 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71
           +      HVPVL  + +A+L P  G   +DATFGAGGY+R   +  G+ VI +DRD  A+
Sbjct: 1   MSTADPRHVPVLGPEAVAMLAPREGGTYIDATFGAGGYTRLILQSPGTRVIGIDRDSTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G   + +   + +L +  FS + D         VDG+V D+GVSSMQ+D   RGFSF+
Sbjct: 61  AGGAALVAEAGARLTLVENRFSAIADICASLGLSQVDGIVMDVGVSSMQLDSAARGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM  +G +A+DVV QA  +DL  I+ I GEE+ +  +A AIV  R+  P  TT
Sbjct: 121 FDGPLDMRMGETGPTAADVVAQAAERDLADIIYIFGEERHSRAVARAIVAARKEQPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ + V   K   IHPATR+FQ LRI VN E++EL Q L +AE+ L  GG L VV
Sbjct: 181 RQLADIVARVVRS-KPGDIHPATRTFQGLRILVNEELDELEQALSAAEQVLAPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F A RS      RH+         FQ + +K VV  Q ++  N R+RS
Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEIAQETPTFQLLNRKPVVADQSEIEANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           AKLR   RT   +    +    PRL  +   RG
Sbjct: 300 AKLRGAERTAAPARLPPASSSWPRLADV--LRG 330


>gi|240141491|ref|YP_002965971.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           AM1]
 gi|263456428|sp|C5ATZ5|RSMH_METEA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240011468|gb|ACS42694.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           AM1]
          Length = 351

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 143/323 (44%), Positives = 194/323 (60%), Gaps = 7/323 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  
Sbjct: 16  EQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 75

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G + +     +  L Q  F  L        +   D +V D+GVSSMQID   RGFSF++ 
Sbjct: 76  GADLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWIVLDIGVSSMQIDEAQRGFSFRQD 135

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  
Sbjct: 136 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQ 195

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F
Sbjct: 196 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 255

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRS
Sbjct: 256 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 315

Query: 309 AKLRAGMRTVERSIEDDSFVHLP 331
           AKLRAG RT   +    S + + 
Sbjct: 316 AKLRAGERTDAPAPPPLSAIEML 338


>gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
 gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
          Length = 330

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 210/328 (64%), Gaps = 6/328 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M++    + G HVPVLL  ++A + P      LD TFGAGGYSR   + G+ +VI +DRD
Sbjct: 1   MTTDRQTSSGPHVPVLLRPLLAAVAPVS-GRWLDGTFGAGGYSRGLLEAGADHVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q+ + DY  + +  Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQDWIGDYDGRLTFQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDMAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+V + +   L  IL + GEE+ + RIA AIVK R  AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFMFGEERASRRIARAIVKARTEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +  SK  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLQLAGIIESCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK   A R+       P+ F  +T+K V P  E++A N RS
Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEQEETPSQFTLVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333
           RSA+LR G RT    +E  +  + +P+L
Sbjct: 298 RSARLRVGRRTDAAPVEISAKDIGMPQL 325


>gi|310659206|ref|YP_003936927.1| s-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Clostridium sticklandii DSM 519]
 gi|308825984|emb|CBH22022.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Clostridium sticklandii]
          Length = 310

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 173/309 (55%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               HV VLL + + +L+  P  + +D T G  G+S    K      +I  D+D  A+S 
Sbjct: 1   MEFKHVTVLLNEAVDILDIKPDGIYVDGTLGGAGHSLEIVKKLTSGKLICFDQDINAISA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+ ++  L  + F  L++ +     + +DG + DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKEKLKDFMDKTILVHSNFENLREELNKLGIETIDGFLVDLGVSSHQLDVPERGFSYMQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  +SA DVVN  +  +L R++   GEE  ++RIA  IV+RR + P +TT 
Sbjct: 121 APLDMRMDNNAELSAYDVVNTYSEAELKRVIKDYGEENWSARIAKIIVERRTTMPIRTTF 180

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L   I+  +    ++   HPA R+FQA+RI VN E++ + + L +A   +  GG+L V+
Sbjct: 181 ELVDAIKAAIPKKMRDENQHPAKRTFQAIRIEVNRELDVIEKTLLAAVDMMNEGGVLAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F                      V + IT+K ++P++ +V  N RSR
Sbjct: 241 TFHSLEDRIVKNVFKKLQYSCTCPPEFPVCICNSKQVVEIITRKPILPSENEVEMNPRSR 300

Query: 308 SAKLRAGMR 316
           SAKLRA  +
Sbjct: 301 SAKLRAARK 309


>gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
 gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
          Length = 312

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 134/311 (43%), Positives = 194/311 (62%), Gaps = 9/311 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL++V+  LNP PG V++DATFGAGGY+R+  + G+ V A DRDP A++ G+  
Sbjct: 4   APHIPVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGATVHAFDRDPDAIASGRTW 63

Query: 78  M--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +  L    FS++ + +     + VDGVV D+GVSSMQ+D   RGF+F   GP
Sbjct: 64  RETEQTPPRLILHPHRFSEMLEVMRAAGVERVDGVVMDIGVSSMQLDQAHRGFAFSADGP 123

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D +N A    +  ++   GEE+Q+ R+A AIV  R   P +TT DL+
Sbjct: 124 LDMRMSQDGESAADFLNTAAESTIADVVYQYGEERQSRRVARAIVAAR---PLETTGDLA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K +    +++  PATR+FQA+RI VN E++EL+QGL +AE  L+ GG L VVSFHS
Sbjct: 181 RVVRKALGHKPHDKKDPATRTFQAIRIHVNGELDELSQGLSAAEHLLREGGRLAVVSFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F    S      RH+  +     VF  ++ K + PT+ ++  N R+RS+ LR
Sbjct: 241 LEDRIVKRFLREASSTPSGSRHVPMAAQVDPVFSPVS-KAIKPTEAEIDRNPRARSSVLR 299

Query: 313 AGMRTVERSIE 323
             +RT   + E
Sbjct: 300 HAVRTAAPARE 310


>gi|295706376|ref|YP_003599451.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319]
 gi|294804035|gb|ADF41101.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319]
          Length = 311

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL++    LN  P  V +D T G  G+S            +IA D+D  A++ 
Sbjct: 1   MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y ++  L ++ F  L++ + +     VDGV+FDLGVSS Q+D  +RGFSF   
Sbjct: 61  AKEKLAPYLDRVILIKSNFRYLKEQLMEHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + + SA +VVN+   + L +I    GEEK + +IA  I   R+S P +TT 
Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI+  +    +    HPA R FQA+RI VN+E++     +  A   +K GG + V+
Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F + S          I         + IT+K ++P++E++  N+R+R
Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKMKVITRKPILPSEEEIEENKRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIVEK 309


>gi|323489493|ref|ZP_08094720.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Planococcus donghaensis MPA1U2]
 gi|323396624|gb|EGA89443.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Planococcus donghaensis MPA1U2]
          Length = 312

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL + +  LN  P  + +D T G  G+S           ++   D+D  A++ 
Sbjct: 1   MFNHTTVLLHETVDGLNVRPDGIYVDCTLGGAGHSEYLVQQLSDQGHLYCFDQDATAIAH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +++Y  + +   A F  L++ +       VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLQEYLHRITFIHANFKFLKEELEMHGVEKVDGILYDLGVSSPQLDTPERGFSYHND 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA  VVN+ + +DL RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 APLDMRMDQSAELSAYHVVNEWSFEDLVRIFYRYGEEKFSKQIARKIEAAREKQPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L   I+  +    +    HPA R FQA+RI VN+E+      L+ A   L  GG + V+
Sbjct: 181 QLVECIKDGIPAFARRKGGHPAKRVFQAIRIAVNDELGAAETSLQDAVSLLAIGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S       ++    +    + + IT+K ++P++E++  N RSR
Sbjct: 241 TFHSLEDRLCKAIFKEASSLPELPPNLPVIPDGMEPILKLITRKPILPSEEELEHNNRSR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 301 SAKLRIAEKINE 312


>gi|263460426|sp|A5G8K8|RSMH_GEOUR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 312

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/307 (40%), Positives = 176/307 (57%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ V+  +VI  L P  G + +D T G GG++R   +       +I  DRD  A++   E
Sbjct: 6   HISVMAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+  L Q  F+ L + + +     +DG + D+GVSS Q+D   RGFSFQ   PL
Sbjct: 66  RLAPYGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SASD+VN  +  DL RI+   GEE+ A RIA  IVKRR+ +P +TT  L 
Sbjct: 126 DMRMDVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLV 185

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V     + R+HPATR+FQALRI VN+E+  L + L +  + LK GG  +V+SFH
Sbjct: 186 DVIKGAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F S +      + +         + + IT K V+  + +V+ N RSRSA+
Sbjct: 246 SLEDRIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSAR 305

Query: 311 LRAGMRT 317
           LRA  + 
Sbjct: 306 LRAAEKI 312


>gi|257888481|ref|ZP_05668134.1| methyltransferase [Enterococcus faecium 1,141,733]
 gi|257824535|gb|EEV51467.1| methyltransferase [Enterococcus faecium 1,141,733]
          Length = 319

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 170/312 (54%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y  +   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  ++A  V+N+    +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYPYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +    +    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 303 SRSAKLRIAEKI 314


>gi|15615138|ref|NP_243441.1| hypothetical protein BH2575 [Bacillus halodurans C-125]
 gi|20139210|sp|Q9K9S0|RSMH_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|10175196|dbj|BAB06294.1| BH2575 [Bacillus halodurans C-125]
          Length = 310

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 178/309 (57%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VL  + +  LN  P  + +D T G  G+S+   K    G ++ A D+D +A+S 
Sbjct: 1   MFEHVTVLKNESVIGLNIKPDGIYVDCTLGGAGHSQEIVKQLTGGGHLYAFDQDQYALSH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +ET+  Y+  F+L ++ F  +++ + +     VDGV+FDLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKETLSPYRGSFTLIESNFRYMREKLEELGVHHVDGVLFDLGVSSPQLDEDERGFSYHRD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+    +SA +VVNQ +  +L +I+   GEE+ A +IA  I + R+  P +TT 
Sbjct: 121 APLDMRMNRSQSLSAYEVVNQWDFIELMKIISRYGEERFAKQIARKIEQSREKKPIRTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R+FQA+RI VN+E+    + L +A       G + V+
Sbjct: 181 ELVDIIKEAIPAPARRTGGHPAKRTFQAIRIAVNDELGAFEEALEAAIDLTAPKGRICVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S        +      + A  + ITKK +VPT E++  N R+R
Sbjct: 241 TFHSLEDRICKEMFREASKGPDVPPGLPVIPEEYKATLKLITKKPIVPTAEEIELNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|110800523|ref|YP_696548.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC
           13124]
 gi|110803229|ref|YP_699148.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101]
 gi|168206081|ref|ZP_02632086.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str.
           JGS1987]
 gi|168210772|ref|ZP_02636397.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215224|ref|ZP_02640849.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str.
           F4969]
 gi|168215494|ref|ZP_02641119.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC
           8239]
 gi|169343521|ref|ZP_02864520.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str.
           JGS1495]
 gi|122958788|sp|Q0TP92|RSMH_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123047275|sp|Q0SRV9|RSMH_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110675170|gb|ABG84157.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC
           13124]
 gi|110683730|gb|ABG87100.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101]
 gi|169298081|gb|EDS80171.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str.
           JGS1495]
 gi|170662388|gb|EDT15071.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str.
           JGS1987]
 gi|170711095|gb|EDT23277.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713370|gb|EDT25552.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str.
           F4969]
 gi|182382153|gb|EDT79632.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC
           8239]
          Length = 310

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               HV VLL++ I  LN     + +D T G  G+S            +I  D+D  A+ 
Sbjct: 1   MEFKHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +
Sbjct: 61  AAGERLKDYKN-VTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQ 119

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    +TT
Sbjct: 120 DAPLDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN E+E +++ +    K L  GG + +
Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +                    + I++K +  ++E++ FN RS
Sbjct: 240 ITFHSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIIEK 309


>gi|261419308|ref|YP_003252990.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61]
 gi|297530722|ref|YP_003671997.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3]
 gi|319766124|ref|YP_004131625.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52]
 gi|261375765|gb|ACX78508.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61]
 gi|297253974|gb|ADI27420.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3]
 gi|317110990|gb|ADU93482.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52]
          Length = 310

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 175/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN  P  + +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGGGGHSEYLLSRLSARGKLFAFDQDEAAIMH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y  Q       F  LQ+ +     K VDGV+FDLGVSS Q+D  +RGFS+Q  
Sbjct: 61  ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A+++VN+   ++L RI    GEEK + ++A  I + R++ P +TT 
Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRTRPIKTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++ +  HPA R FQALRI VN+E+E   + L  A + L +GG + V+
Sbjct: 181 ELVDVIKEAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLASGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S    +     +  + +  V + ITKK +VP++E++  NRR+R
Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNRRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|147678204|ref|YP_001212419.1| S-adenosyl-methyltransferase MraW [Pelotomaculum thermopropionicum
           SI]
 gi|262824781|sp|A5D113|RSMH_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146274301|dbj|BAF60050.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Pelotomaculum thermopropionicum SI]
          Length = 311

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L++V+  LN  PG V +D T G  G+  +  K       +I +DRDP A++  + 
Sbjct: 5   HRPVMLDEVLEGLNLKPGGVYVDCTVGGAGHGEAILKRTGAEGRLIGIDRDPEALAAAER 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +A F  +   +      GVDG++FDLGVSS Q+D   RGFS+++   L
Sbjct: 65  RLVPYGKRVDLVRANFEDIGKVLERLGQTGVDGILFDLGVSSYQLDNPARGFSYKRDSLL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA ++VN    ++L RI+   GEE+ A RIA  IV+ R+ +P +TT  L+
Sbjct: 125 DMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEERKRSPIETTGRLA 184

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +   ++    HPA R+FQALRI VN E+E L   LRSA + L+ GG + V+++H
Sbjct: 185 EIIKKAIPAGARREGPHPARRTFQALRIAVNRELEVLGGALRSAVRVLRPGGRICVITYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F   +      +             + +T + VVP+  +V  N R+RSAK
Sbjct: 245 SLEDRIVKETFRRLASPCTCPKEFPACVCGGKKEIKIVTARPVVPSAGEVEENPRARSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|262831542|sp|Q07PU1|RSMH_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 150/331 (45%), Positives = 197/331 (59%), Gaps = 8/331 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSC 73
                H+ VL  + +  L P  G V +DATFGAGGYSR+   + G+ VI +DRD  A++ 
Sbjct: 4   PESVRHISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAG 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G + +     + +L ++ FSQL +    +    VDGVV D+GVSSMQ+D  +RGFSF+  
Sbjct: 64  GFDLVEQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFD 123

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA++V+  A+  DL  I  I GEE+ +  +A AIV  R   P  TT+ 
Sbjct: 124 GPLDMRMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKA 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ K V+  K   IHPATRSFQ LRIFVN E++EL   L +AE+ LK GG L+VVSF
Sbjct: 184 LADLVSKVVHS-KPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK FFA R       RH          F  +TK+ V P+ E+ A N R+RSAK
Sbjct: 243 HSLEDRIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAK 302

Query: 311 LRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           LRAG RT   +  +     LP  PTL+   G
Sbjct: 303 LRAGERTAAPAQPE---APLPHWPTLASVMG 330


>gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 348

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 158/328 (48%), Positives = 209/328 (63%), Gaps = 7/328 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L P PG+VI+D TFGAGGY+R+    G++VIA+DRDP A++  +  
Sbjct: 17  ARHIPVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGADVIAIDRDPAAIATARGL 76

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              Y  + +  +  F  LQ  V  +       VDG+V D+GVSSMQ+D  +RGFSFQK G
Sbjct: 77  AEGYDGRLAPVEGRFGDLQRIVETQAEAAGGRVDGIVLDVGVSSMQLDEAERGFSFQKDG 136

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS +G SA+DVVN+  V DL R++GILGEEKQA R+A AI  RR   PF  T DL
Sbjct: 137 PLDMRMSGAGPSAADVVNRLKVGDLLRVIGILGEEKQAGRVARAIEARRLEQPFTRTLDL 196

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I K V     ++I PATRSFQ LRIFVN+E+ ELA+ L +AE+ LK GG L++VSFH
Sbjct: 197 AGVIGKVVGRGPKDKIDPATRSFQGLRIFVNDELGELARALVAAERVLKPGGRLVIVSFH 256

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F   RS      RH+         F +  +  V  T  +   N R+RSAKL
Sbjct: 257 SLEDRIVKRFLRDRSSPPSGSRHLPDMAPATQTFVARNR-AVGATDAEAERNPRARSAKL 315

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           RAG+RT E + +D   +    LP+L+  
Sbjct: 316 RAGIRTAEPARQDADELGFAGLPSLADL 343


>gi|291530304|emb|CBK95889.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum 70/3]
          Length = 308

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 172/306 (56%), Gaps = 4/306 (1%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72
                H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV 
Sbjct: 2   SEKPIHIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVK 61

Query: 73  CGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +E ++DY       + +TF +  D +    VDGV+ DLGVSS Q+D  +RGFS+ +  
Sbjct: 62  AAEEKLKDYPHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDA 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L
Sbjct: 122 PLDMRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V        +P  ++FQA+RI VN E++EL +G+  A + L AGG L +++FH
Sbjct: 182 AEIVKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSAGGRLAIITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           S+EDR+VK  F                        +++ +K V  ++E++  N RSRSAK
Sbjct: 242 SIEDRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKTVTASEEELEVNNRSRSAK 301

Query: 311 LRAGMR 316
           LR   +
Sbjct: 302 LRVIEK 307


>gi|146295951|ref|YP_001179722.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|263446954|sp|A4XHZ6|RSMH_CALS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145409527|gb|ABP66531.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 307

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 187/309 (60%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+  + L   P  + +DATFG GG+S+   +  S+   ++A+D+D  A+  
Sbjct: 1   MYEHIPVLLEESTSYLVTKPDGIYVDATFGLGGHSKKILEKLSSNGFLVAIDKDEEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+E  +       +  + FS+L +   ++    +DG++FDLGVSS+Q+D  +RGFS+   
Sbjct: 61  GKEKFKKCNN-IKIVHSPFSRLDEVLNFLKIDKIDGILFDLGVSSLQLDKPERGFSYNSD 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN+ + K+L RI+   GEE+ A +IA  IVKRR+  P  TT+
Sbjct: 120 SFLDMRMDKTSKLTAYDVVNKYSEKELERIIREYGEERYAKKIAKEIVKRREQKPITTTK 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ LI   V   K+   +PA R+FQA+RI VN E+EE+   L  + + LK+GG + V+S
Sbjct: 180 ELNDLINSVVPRPKDGS-NPAKRTFQAIRIEVNGELEEIKVALEKSIRFLKSGGRICVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  + +             +TKK + PT+E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKYHSLECICPKDIPVCVCGKKKELNILTKKPITPTKEEIERNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKI 307


>gi|253681660|ref|ZP_04862457.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str.
           1873]
 gi|253561372|gb|EES90824.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str.
           1873]
          Length = 309

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSYILKRLSKKGKLIGIDQDINALKAAK 63

Query: 76  ETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +++Y     +    +  + + D +  + VDG++ DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  EKLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAVL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA ++VN+ + ++L RI+   GEE+ A +IA AIVK+R+  P +TT +L 
Sbjct: 124 DMRMNTEESVSAYNIVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA ++FQA+RI VN+E+E L + +    K L + G + +++FHS
Sbjct: 184 KIIKKVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNSHGRISIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F          +           V + IT+K + P+QE+   N RS+S+KL
Sbjct: 244 LEDRIVKNKFKELENPCTCPKEFPICICGMKPVVKVITRKPLEPSQEEKENNSRSKSSKL 303

Query: 312 RAGMRT 317
           R   R 
Sbjct: 304 RVAQRI 309


>gi|294501027|ref|YP_003564727.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551]
 gi|294350964|gb|ADE71293.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551]
          Length = 311

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL++    LN  P  V +D T G  G+S            +IA D+D  A++ 
Sbjct: 1   MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y ++  L ++ F  L++ +       VDGV+FDLGVSS Q+D  +RGFSF   
Sbjct: 61  AKEKLAPYLDRVILIKSNFRYLKEQLMKHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + + SA +VVN+   + L +I    GEEK + +IA  I   R+S P +TT 
Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI+  +    +    HPA R FQA+RI VN+E++     +  A   +K GG + V+
Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F + S          I         + IT+K ++P++E++  N+R+R
Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKMKVITRKPILPSEEEIEENKRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIVEK 309


>gi|257899142|ref|ZP_05678795.1| methyltransferase [Enterococcus faecium Com15]
 gi|293571737|ref|ZP_06682756.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980]
 gi|257837054|gb|EEV62128.1| methyltransferase [Enterococcus faecium Com15]
 gi|291608194|gb|EFF37497.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980]
          Length = 319

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 171/312 (54%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y  +   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  ++A  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +    +    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 303 SRSAKLRIAEKI 314


>gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1]
 gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1]
          Length = 339

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 152/324 (46%), Positives = 214/324 (66%), Gaps = 3/324 (0%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L PA GK+ILD TFGAGGY+R+  + G++VIA+D+DP A++ G+  
Sbjct: 14  APHLPVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGADVIAIDQDPDAIAGGKPL 73

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
            +++  +  L +  FS++++   +  +DG+V D+GVSSMQ+D  +RGFSF++ GPLDMRM
Sbjct: 74  AQEFAPRLRLERGRFSEMEEIAGEM-LDGIVLDVGVSSMQLDQAERGFSFRREGPLDMRM 132

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G SA+DVVN+    DL RI G+LGEE+ A RIA AI K R   PF+TT DL+ L+++
Sbjct: 133 GQEGTSAADVVNKFKAGDLARIFGLLGEERHAGRIARAIEKGRAEKPFRTTGDLAELVER 192

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +     ++IHPATR FQ LRIFVN+E+ ELA+ L +AE+ LK GG+L VV+FHSLEDR+
Sbjct: 193 VIGHRPTDKIHPATRVFQGLRIFVNDELGELARALFAAERLLKPGGILAVVTFHSLEDRI 252

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+F  +RSG     RH+    A   VF+    K V P + + A N R+RSA LRA  RT
Sbjct: 253 VKRFLQARSGPQAQSRHLPEKAAAQPVFEKPM-KPVSPGEAETAENPRARSAHLRAARRT 311

Query: 318 VERS-IEDDSFVHLPRLPTLSQFR 340
              + ++D     +P L    Q  
Sbjct: 312 AHPAGVQDFKLFGVPALFVTEQLG 335


>gi|257885174|ref|ZP_05664827.1| methyltransferase [Enterococcus faecium 1,231,501]
 gi|261206514|ref|ZP_05921214.1| methyltransferase [Enterococcus faecium TC 6]
 gi|289565424|ref|ZP_06445873.1| methylase MraW [Enterococcus faecium D344SRF]
 gi|294614715|ref|ZP_06694617.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636]
 gi|294618987|ref|ZP_06698482.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679]
 gi|257821026|gb|EEV48160.1| methyltransferase [Enterococcus faecium 1,231,501]
 gi|260079224|gb|EEW66915.1| methyltransferase [Enterococcus faecium TC 6]
 gi|289162753|gb|EFD10604.1| methylase MraW [Enterococcus faecium D344SRF]
 gi|291592453|gb|EFF24060.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636]
 gi|291594648|gb|EFF26030.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679]
          Length = 319

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 171/312 (54%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y  +   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  +SA  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +    +    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 303 SRSAKLRIAEKI 314


>gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278]
 gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278]
          Length = 331

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 140/328 (42%), Positives = 194/328 (59%), Gaps = 5/328 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71
           +      H+PVL  + +A+L P  G   +DATFGAGGY+R      G+ VIA+DRD  A+
Sbjct: 1   MSTADPRHIPVLGPEAVAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRDSTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + + +   + +L ++ FS L +    +    VDG+V D+GVSSMQ+D   RGFSF+
Sbjct: 61  AGGADLVGEANGRLTLVESRFSALAEICAAQAVGQVDGIVMDVGVSSMQLDTAARGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM+ +G SA+DV+ QA+ +DL  ++ I GEE+ +  IA AIV  R+     TT
Sbjct: 121 FDGPLDMRMADTGPSAADVIAQASERDLADVIYIFGEERHSRGIARAIVAARKEQQITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ + V   K   IHPATR+FQALRI VN E++EL Q L +AE+ L   G L VV
Sbjct: 181 RQLADIVARVVRS-KPGDIHPATRTFQALRILVNEELDELEQALSAAERILPPSGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F A RS      RH+         FQ + +K VV  + +   N R+RS
Sbjct: 240 SFHSLEDRIVKTFLAERSKIGGGSRHLPEIAQQAPSFQLLNRKPVVADEAETVANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           AKLR   RT   +    S    PRL  +
Sbjct: 300 AKLRGAARTTAPAHPPSSSSAWPRLADV 327


>gi|225175505|ref|ZP_03729499.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1]
 gi|225168834|gb|EEG77634.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1]
          Length = 320

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++ ++ L P PG+V +D T G GG+SR+  +       +IA+D+D  A++  +E
Sbjct: 6   HEPVLLQETLSALAPRPGEVFVDGTVGGGGHSRAILEKITPHGRLIAIDQDKNALAAAKE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+  ++E  +     F+ LQD +     + VDG++ D+GVSS Q+D G+RGFSF    PL
Sbjct: 66  TLAPWREHVTFVHNNFANLQDVLESEGVQKVDGILLDIGVSSHQLDEGERGFSFNTEAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF--QTTQD 190
           DMRM+   G++A+ +VN+ + ++LTRIL   GEE  A RIA  +V RR++      T Q 
Sbjct: 126 DMRMNRDKGVTAAQLVNELDAEELTRILRDYGEELWARRIAEFMVARRKNHGPIETTGQL 185

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +  +       ++    HPA R+FQALRI VN+E+  L + +      LK GG L V++F
Sbjct: 186 VDVIKAAIPARARRRGPHPARRTFQALRIAVNDELGVLERAVNDGIDCLKTGGRLAVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VKK F  R+        +   +  + A  + +T K V   ++++  N R+RSA
Sbjct: 246 HSLEDRMVKKIFQHRAAGCQCPPGLPQCACGNQAHVKILTGKPVQAKEDELERNPRARSA 305

Query: 310 KLRAGMRTVE 319
           KLRA ++ + 
Sbjct: 306 KLRAVIKVLN 315


>gi|291522688|emb|CBK80981.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7]
          Length = 313

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/313 (30%), Positives = 163/313 (52%), Gaps = 9/313 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H  VLL + I  L+     + +D T G GG++ +  +       +I +D+D  A+ 
Sbjct: 1   MTFQHYSVLLNETIEQLDIKENGIYVDGTLGGGGHASAVLQRLGETGRLIGIDQDAAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + ++ ++ ++ +S +   + D    GVDG+V DLGVSS Q+D  +RGF++++
Sbjct: 61  AAGERLAPFGDKVTIVRSNYSAMPQVLADLGIHGVDGIVLDLGVSSYQLDTVERGFTYRE 120

Query: 130 SGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM       +  +VN     +L  ++   GE+K A  IA  IV  R+  P +TT
Sbjct: 121 DTVLDMRMDQRQTKTARDIVNDYTETELFHMIRDYGEDKFARNIAKHIVMAREKKPIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I+  +    +    HP+ +++QA+RI +N+E++ L   L      L   G + V
Sbjct: 181 GELNDIIRAAIPAKVRAKGGHPSKKTYQAIRIELNHELDVLKNTLDQMIDLLNDHGRICV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F +            +      +  + IT+K ++P++E++  N RS
Sbjct: 241 ITFHSLEDRIVKNIFNTNERPCTCPPSFPVCVCGKKSKGRVITRKPILPSEEELEVNSRS 300

Query: 307 RSAKLRAGMRTVE 319
           +SAKLR   R  E
Sbjct: 301 KSAKLRVFERIRE 313


>gi|20138864|sp|O07665|RSMH_ENTHR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2624083|emb|CAA74239.1| mraW [Enterococcus hirae]
          Length = 319

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 164/312 (52%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGIYVDCTLGGAGHSEYLLSQLNTNGHLYAFDQDQKAID 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG--VVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y  K   +  +A F +L+  + +       +++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKVRLAPYIEKGMVTFIKANFRELEAKIKEHVPQVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  +SA DVVN+ +  +L +I    GEEK + +IA  I + R+  P QT
Sbjct: 123 QDAPLDMRMDQSAPLSAYDVVNEYSYNELVKIFFRYGEEKFSKQIAREIERVRKIHPIQT 182

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +    +    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKDVIPAPARRKGGHPAKRIFQAIRIAVNDELGAEEASLEQAIRLLKINGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +         + I +K ++P++E+++ N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVVPEEFQPELKLINRKPILPSEEELSENNR 302

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 303 SRSAKLRIAEKI 314


>gi|302874623|ref|YP_003843256.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
 gi|307690766|ref|ZP_07633212.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
 gi|302577480|gb|ADL51492.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
          Length = 311

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 162/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLLE+ I  L+  P  + +D T G  G+S    K       +I +D+D  A++
Sbjct: 1   MEFKHVSVLLEECIEGLSIKPDGIYVDCTLGGAGHSFEIVKQLTSEGRLIGIDQDTNAIN 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++DY    +     F  + + + +     VDG++ DLGVSS Q+D  +RGFS+ K
Sbjct: 61  AAKEKLKDYNN-VTYVHDNFHNIGEILENLNIDKVDGILMDLGVSSHQLDVAERGFSYMK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA D+VN  + + L +I+   GEEK A RIA  IVK R     +TT
Sbjct: 120 DAPLDMRMNQERDFSAYDIVNTYSEEQLFKIIRDYGEEKFAKRIASFIVKNRNEKTIETT 179

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  +    +    HPA R+FQA+RI VN E+E L + +      L   G + +
Sbjct: 180 FQLVEIIKNAIPAKARREGPHPAKRTFQAIRIEVNKELEILDKAINDGIDKLALDGRICI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  +  ++      +             + I++K +  + E++ +N RS
Sbjct: 240 ITFHSLEDRIVKNIYKEQANPCTCPKEFPICICNRKPKVKIISRKPIEASAEELEYNPRS 299

Query: 307 RSAKLRAGMRT 317
           RSAKLR   + 
Sbjct: 300 RSAKLRVAEKI 310


>gi|241888447|ref|ZP_04775758.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379]
 gi|241864889|gb|EER69260.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379]
          Length = 311

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL + +  L+     + +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLNEAVEGLDIKEDGIYVDCTLGGAGHSLEILKRLKNGKLYAFDQDNVALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E + +Y ++    ++ F  L++ + +     VDGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KEKLAEYSDKVVFIKSNFVNLKEKLAEHGVNEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA +VVN+ +  DL +I    GEE  + +IA  I K+R+  P +TT +
Sbjct: 121 RLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +  GG + V++
Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVSVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S S      ++  I      +  + IT+K + P+  ++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYSKSKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVAQ 307


>gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 316

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 182/306 (59%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P PG V +DAT G GG++    +       VIA D+D  A++  + 
Sbjct: 5   HETVLLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEP 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R Y  + +L +A F+++++ +       VDGV+FDLGVSS Q D  +RGFS+   GPL
Sbjct: 65  LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A ++VN+ + ++L RI+   GEE+ A+ IA AI + R   P +TT +L+
Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAITRARSKKPIETTTELA 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +  + + +  HPA R+FQA+RI VN+E+  L +G+ +A +AL+ GG L V++FH
Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + +   +              + + +++K V P+ E++  N R+RSAK
Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 305 LRAFEK 310


>gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 331

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 146/326 (44%), Positives = 198/326 (60%), Gaps = 6/326 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +    T   H+PVLL  ++  + P      LD TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 4   ADHTPTDKPHIPVLLRPLLDAVRPVS-GTWLDGTFGAGGYTRGLLEAGADRVIGVDRDPL 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     +   +Y ++  +    FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K
Sbjct: 63  AFEMAADWAAEYGDRLVMQPGVFSRMDEYASD--LDGVVLDLGVSSMQLDQAERGFSFMK 120

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G SA+D+VN A    L  IL   GEE+ + RIA AIVK R  AP  TT 
Sbjct: 121 DGPLDMRMSQEGESAADLVNTATEAQLADILFHYGEERASRRIARAIVKARAEAPITTTL 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +++  +  +K  + HPATRSFQALRI VN E EEL QGL +AE+ALK GG L VV+
Sbjct: 181 RLAEIVESCLPRAKPGQSHPATRSFQALRIAVNAEYEELFQGLMAAERALKPGGKLAVVT 240

Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHS+EDR+VK+F  +R+GK   A R+          F   T+K + P  +++  N R+RS
Sbjct: 241 FHSVEDRMVKRFLQARAGKTGRANRYAPEIQQDQPQFTLKTRKAIGPDAQELQDNPRARS 300

Query: 309 AKLRAGMRTVERSIEDDS-FVHLPRL 333
           AKLR  +RT   + E D+  + +P +
Sbjct: 301 AKLRVAVRTDAPAGEIDARAIGMPMI 326


>gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
 gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
          Length = 346

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 162/345 (46%), Positives = 223/345 (64%), Gaps = 14/345 (4%)

Query: 9   MSSAIHHTI-------GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
           M +    ++         HVPVLL+ V+  L P PG+VI+D TFGAGGYSR+  + G++V
Sbjct: 1   MMAQSTSSVDLEAGGPERHVPVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGASV 60

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQI 118
           I +DRDP A++ GQ  +     + +L    F+ L+ +        VDGVV DLGVSSMQ+
Sbjct: 61  IGVDRDPDAIAGGQPLVEASDGRLTLVPGCFADLETHARSLGHDAVDGVVLDLGVSSMQL 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
           D  +RGFSF + GPLDMRM   G SA+DVVN+ +V+DL RI+G+LGEEK+A+ +AHAI  
Sbjct: 121 DEAERGFSFLRDGPLDMRMEQEGPSAADVVNELSVRDLIRIIGVLGEEKRATTVAHAIDN 180

Query: 179 RRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF  T +L++L++K +    K  +IHPATR+FQALRI+VN E+ + AQ L +AE 
Sbjct: 181 ARKEGPFTRTGELAALVEKVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAEN 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            LK GG L+VVSFHSLEDR+VK+F A RS       RHM  +   P  F+ +T+K +  T
Sbjct: 241 ILKPGGRLVVVSFHSLEDRIVKRFLADRSKTHAGGSRHMPETEVEPPTFELLTRKAIDGT 300

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
             ++A N R+RSAKLRAG RT   +   D  +H   +P L+ F+G
Sbjct: 301 DAEIAGNPRARSAKLRAGRRTTNPARSLD--IHAAGVPRLADFKG 343


>gi|78484904|ref|YP_390829.1| methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|123555855|sp|Q31I68|RSMH_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78363190|gb|ABB41155.1| S-adenosyl-methyltransferase MraW [Thiomicrospira crunogena XCL-2]
          Length = 314

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 122/318 (38%), Positives = 176/318 (55%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS        +H PV+L + +A LN  P  + +D TFG GG+SR+          ++A+D
Sbjct: 1   MSEIEQTGQSNHYPVMLSESVAGLNIDPNGIYIDCTFGRGGHSRAILNELGEQGRLLAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCG 121
           +DP A+        D   +F +   +F  LQ Y         +DG++ DLGVSS Q+D  
Sbjct: 61  QDPEAIRYADANFDD--PRFEIQHGSFEALQQYCEARDWVGKIDGILIDLGVSSPQLDEA 118

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF +SGPLDMRM+   G+SA + + Q + K L ++L   GEE+ + RIA  I +  
Sbjct: 119 ERGFSFMRSGPLDMRMNPQTGLSAKEWLTQVDEKTLAQVLKQYGEERFSGRIARHIKEAV 178

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q    QTT DL+ ++ K    ++ ++ HPATR+FQA+RI VN E++ L   L  +   LK
Sbjct: 179 QEQKLQTTLDLAQVVTKASPKTEKHK-HPATRTFQAIRIAVNRELDVLKTVLEVSVAVLK 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
            GG L V+SFHSLEDR+VK+F   +S  K +     I       V + +  K V P++E+
Sbjct: 238 TGGRLSVISFHSLEDRIVKQFIRDQSRIKDLFPDSPIQLEVVEPVIKKV-GKPVFPSKEE 296

Query: 300 VAFNRRSRSAKLRAGMRT 317
              N RSRSA LR   R 
Sbjct: 297 CQENPRSRSAVLRIAERI 314


>gi|311029920|ref|ZP_07708010.1| S-adenosyl-methyltransferase MraW [Bacillus sp. m3-13]
          Length = 312

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 167/312 (53%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  HV VLL + +  LN       +D T G  G+S            +IA D+D  A+  
Sbjct: 1   MFHHVTVLLNEAVEGLNIKEDGTYVDCTLGGAGHSSEIVKQLSDKGRLIAFDQDDHALEH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + +Y ++    ++ F  L++ + ++    VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKNVLHNYLDRVIFIKSNFKHLKEKLYEQGITKVDGVLFDLGVSSPQLDTPERGFSYHHE 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +   SA DVVN+ + + L RI    GEEK + +IA  I + R+S P +TT 
Sbjct: 121 APLDMRMDMNSPLSAYDVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEEYRKSKPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HPA R FQA+RI VN+E+      +  A   LK GG + V+
Sbjct: 181 ELVEIIKDGIPAPARRTGGHPAKRVFQAIRIAVNDELGVFEDAIHQAIDVLKVGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S          I       + + IT+K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRMCKVAFKEKSQLPQLPPGLPIIPEEFQPILKLITRKPILPSEEELETNNRAR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  +
Sbjct: 301 SAKLRIAEKAKD 312


>gi|182626151|ref|ZP_02953911.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str.
           JGS1721]
 gi|177908588|gb|EDT71113.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str.
           JGS1721]
          Length = 310

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 167/310 (53%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               HV VLL++ I  LN     + +D T G  G+S            +I  D+D  A+ 
Sbjct: 1   MEFKHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +
Sbjct: 61  AAGERLKDYKN-VTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQ 119

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    ++T
Sbjct: 120 DAPLDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIEST 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN E+E +++ +    K L  GG + +
Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +                    + I++K +  ++E++ FN RS
Sbjct: 240 ITFHSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIIEK 309


>gi|325265585|ref|ZP_08132276.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           denitrificans ATCC 33394]
 gi|324982933|gb|EGC18554.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           denitrificans ATCC 33394]
          Length = 323

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 168/317 (52%), Gaps = 10/317 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +     +H+ VLL + +  LN  P  + +D TFG GG+SR           +I  D+DP 
Sbjct: 1   MTTQSFEHITVLLNEAVDALNVRPSGIYVDGTFGRGGHSRLILSRLNEQGRLIVFDKDPA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++  QE +    ++ S+F   FS       +     +DG +FDLG+SS QID   RGFS
Sbjct: 61  AIAVAQE-LARQDQRVSVFHQGFSHFDAACTELGISQIDGALFDLGISSPQIDDASRGFS 119

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G SA++ +  A+ +++  ++   GEE+ + +IA AIV +R  AP 
Sbjct: 120 FRFDAPLDMRMDTTRGESAAEWLMHADEQEIHEVIKNYGEERFSRQIARAIVAKRIEAPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ +  + V  S+    HPATR+FQA+RI++N E++E+AQ L      L   G L
Sbjct: 180 HTTGQLAEIAAQCV-RSREKGQHPATRTFQAIRIYINRELDEVAQVLPQVTTRLNTHGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK+F    S      +      A  P     I  K +    E++ +N 
Sbjct: 239 AVIAFHSLEDRIVKQFMREYSTHAPLPKWAAVREADLPKPPLRIVGKPIKAGAEELNYNP 298

Query: 305 RSRSAKLRAGMRTVERS 321
           R+RSA LR   RT    
Sbjct: 299 RARSAILRVAERTDGEF 315


>gi|229541208|ref|ZP_04430268.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1]
 gi|229325628|gb|EEN91303.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1]
          Length = 309

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL++ +  L+  P  + +D T G GG+S    +   G ++ A D+D  A+   
Sbjct: 1   MFQHKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLQQLTGGHLYAFDQDETAIQHA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E     + + +  ++ F  L+   +    + VDG+++DLGVSS Q+D  +RGFS+Q   
Sbjct: 61  KEKFAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDA 120

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A +VVN+   + L RI    GEEK + +IA  I   R   P +TT +
Sbjct: 121 PLDMRMDLDTPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI++ +   ++    HPA R FQA+RI VN+E+      L  A   LK GG + V++
Sbjct: 181 LADLIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K      S        +         V + IT+K +VP  E+V  N RSRS
Sbjct: 241 FHSLEDRICKNILKEYSSAGDLPHGLPVIPKEYEPVLKLITRKPIVPNDEEVGENNRSRS 300

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 301 AKLRIAEK 308


>gi|304404001|ref|ZP_07385663.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus
           YK9]
 gi|304346979|gb|EFM12811.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus
           YK9]
          Length = 317

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 168/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VL+E+ I  L   P  + +D T G  G+S         G  +IA D+D +A   
Sbjct: 1   MFQHVTVLMEEAIDGLAVKPDGIYVDCTLGGAGHSSGIVSRLGGGGRLIAFDQDDWAHDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----------GVDGVVFDLGVSSMQIDCGDR 123
            +  +    ++ +L ++ F  L+  + +            VDG++FDLGVSS Q+D  +R
Sbjct: 61  ARIRLASSMDKVTLIKSNFRYLEQRLLECEGVPQKDGIPQVDGILFDLGVSSPQLDEAER 120

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+    PLDMRM     ++A D+VN  + +D+ RIL   GEEK A +IA  I   R +
Sbjct: 121 GFSYNHDAPLDMRMDRDIALTAGDIVNTWDERDIARILMEYGEEKFARKIAREIGAARAN 180

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           AP +TT +L  LI+  +  + +    HPA R+FQALRI VN+E++     L  A + LK 
Sbjct: 181 APIETTGELVELIKAGIPAAARRTGGHPAKRTFQALRIAVNDELDAEEDALEQAIRCLKP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDV 300
           GG   V++FHSLEDR+ K+ FA    K                  + + +K +VP++E++
Sbjct: 241 GGRASVITFHSLEDRICKQTFAKYLEKCSCPPDFPLCVCGGQGALKLVNRKPIVPSEEEL 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 EANPRARSAKLRVAEK 316


>gi|51892339|ref|YP_075030.1| S-adenosyl-methyltransferase MraW [Symbiobacterium thermophilum IAM
           14863]
 gi|116241373|sp|Q67Q57|RSMH_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51856028|dbj|BAD40186.1| putative S-adenosylmethionine-dependent methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 318

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 170/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL++ +  L   PG   +D T G GG++    +       +I LD+D  A+    +
Sbjct: 5   HIPVLLQETMEALAVRPGGTYIDCTVGGGGHAAEILRRSSPDGRLIGLDQDENALRAAGD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ +L +  F  + D          DGV+ D+GVSS Q D G+RGFS+    PL
Sbjct: 65  RLAPFGDRVTLVRTNFEHVADVADRLGLGAADGVLMDIGVSSHQFDEGERGFSYHHDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   +A+ +VN+   +++ R++   GEE+ ASRIA  IV+ R+  P +TT  L 
Sbjct: 125 DMRMDRTRPLTAAVLVNEWEEEEIARVIREYGEERWASRIAQFIVRARRQRPIETTGQLV 184

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN+E+  L +GL  A + L+ GG L V++FH
Sbjct: 185 EIIKAAIPASARREGGHPARRTFQAIRIAVNDELGALERGLEGALRVLRPGGRLAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ FA  +        +         + + +T+K V  +  +V  N RSRSA 
Sbjct: 245 SLEDRIVKQTFARWAKPCTCPPDLPVCVCGKAPLAEPVTRKPVRASGAEVKANPRSRSAT 304

Query: 311 LRAGMR 316
           LRA ++
Sbjct: 305 LRAVVK 310


>gi|315924810|ref|ZP_07921027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621709|gb|EFV01673.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 314

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 8/311 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV 71
              G H+ VL ++ IA L    G + +D T G GG+S + C+   +   +I +D+D +A+
Sbjct: 4   DNQGKHITVLRDEAIAGLGIVRGGIYVDCTLGGGGHSEAICRALGHQGTLIGIDQDQYAL 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           S  +  +R  +      +  F  L+  + +   +  DG +FDLGVSS Q D  +RGFS+ 
Sbjct: 64  SRAETRLRSQRCHKIFVRNNFVDLETVLDNAGIEKADGFLFDLGVSSFQFDQAERGFSYH 123

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM  S   +A  VVN  + +DL RIL   GEEK + R+A AIVK R  AP   
Sbjct: 124 HDGPLDMRMDRSRPLTAERVVNTYSQEDLKRILWGYGEEKMSGRVAAAIVKARAQAPITR 183

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+         + HPA ++FQALRI VN E+  L   L++A   L  GG + V
Sbjct: 184 TGQLAEIIKAAYPEKLKRKGHPAKKTFQALRIEVNGELRILNDALKAAIDRLNPGGRICV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLED+LVK+ F  ++   +    +           + IT+K +VP++ ++A NRR+
Sbjct: 244 ITFHSLEDQLVKRLFTEQADPCICPPELPQCVCGRVPTIKKITRKPIVPSETELAANRRA 303

Query: 307 RSAKLRAGMRT 317
           RSAKLR   R 
Sbjct: 304 RSAKLRIAERI 314


>gi|217963812|ref|YP_002349490.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23]
 gi|290892188|ref|ZP_06555184.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-071]
 gi|263456353|sp|B8DH88|RSMH_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217333082|gb|ACK38876.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23]
 gi|290558311|gb|EFD91829.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-071]
 gi|307571615|emb|CAR84794.1| S-adenosyl-methyltransferase [Listeria monocytogenes L99]
          Length = 312

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|86749109|ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|123292796|sp|Q2IYL6|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86572137|gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 337

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 142/332 (42%), Positives = 194/332 (58%), Gaps = 5/332 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAV 71
           +      H+PVL  + + LL P  G + LD TFGAGGYSR   +  +  VIA+DRD  A+
Sbjct: 1   MSEARPRHIPVLGPEAVTLLAPRDGGIYLDGTFGAGGYSRLILEAAATRVIAIDRDRSAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++    + +L +  FS L +    +G   V   V D+GVSSMQ+D  DRGFSF+
Sbjct: 61  AGGFDLVQGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSSMQVDQADRGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G +A+DVV +A+  DL  I+ I GEEK +  +A A++  R+ AP  TT
Sbjct: 121 QDGPLDMRMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARAVIAARKEAPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V   K  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVASVVRA-KPGQIHPATRTFQALRIFVNEELDELYQALAAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDR+VK F A RS      RH+         F  +TK+       +VA N R+RS
Sbjct: 240 TFHSLEDRIVKTFLAERSRVGGGSRHLPELAQAAPSFTVLTKRPTTAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLR G RT   +   D     P L  + +  
Sbjct: 300 AKLRGGERTAAPAHRPDDLPGWPTLAGVMKAG 331


>gi|319938119|ref|ZP_08012517.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1]
 gi|319806640|gb|EFW03289.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1]
          Length = 315

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H+ VLLE+ I  LN     + +D T G GG+S+   K     ++   D+D  A+   
Sbjct: 1   MFNHISVLLEETIEGLNIKEDGIYVDCTLGGGGHSQEILKRLTTGHLYCFDQDQVAIEVA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +    + F++  + F  ++  +     + VDG+VFDLGVSS Q D G+RGFS+    
Sbjct: 61  AKRLSQISDHFTIIYSNFKNMKSELNQLGVQKVDGIVFDLGVSSPQFDDGERGFSYNYDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA ++VN     +L +I     +EK + +IA AI + RQ  P +TT +
Sbjct: 121 KLDMRMDRNQTLSAYEIVNTYEFNELVKIFYKYADEKFSKQIARAIERHRQEKPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALRI VN+E+    + L  +   +  GG + V++
Sbjct: 181 LVEIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELSVFEKALDDSLDCICVGGRIAVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLED++ K  F   + +      M     +    FQ ITKK +V  ++++  N RS S
Sbjct: 241 FHSLEDKICKYTFNEVTKQPQLPMGMPIVPEYLKPRFQKITKKPIVAGEKELEENHRSHS 300

Query: 309 AKLRAGMRTVERS 321
           AKLR   R  E  
Sbjct: 301 AKLRIIERVYENE 313


>gi|221133797|ref|ZP_03560102.1| S-adenosyl-methyltransferase MraW [Glaciecola sp. HTCC2999]
          Length = 310

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 175/308 (56%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L   P  + +DATFG GG+S            +IA DRDP A+   Q+
Sbjct: 6   HTSVLLHECIEGLAIKPDGIYIDATFGRGGHSSYILNALGEHGRLIAFDRDPAAIEAAQK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D   +F++  + F+Q+ +          VDGV+ DLGVSS Q+D   RGFSF + GP
Sbjct: 66  FVND--PRFTIVHSAFAQMDEVPLTAGLIDQVDGVLMDLGVSSPQLDDSSRGFSFLRDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +G+SA   +  A+ +D+ +++   GEEK   RIAHAIV  R   P  +T  L
Sbjct: 124 LDMRMDTSTGVSAEQWLAHADEQDIAQVIKEFGEEKFGKRIAHAIVNTRVHTPINSTLQL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++I +     K+   HPATR+FQ +RI++N+E+++L  GL++A K LK  G L  +SFH
Sbjct: 184 AAIIAEA-MPVKDKHKHPATRAFQGIRIYINSELDQLRDGLKAAVKLLKPTGRLAAISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   +S       +M    A      V + I  K + P+ E+V+ N RSRS
Sbjct: 243 SLEDRMVKRFMREQSKGKNVPHNMPILQAEIDADKVLKLI-GKAIKPSDEEVSNNPRSRS 301

Query: 309 AKLRAGMR 316
           + LR   +
Sbjct: 302 SVLRVAEK 309


>gi|169824308|ref|YP_001691919.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328]
 gi|263447055|sp|B0S0Y9|RSMH_FINM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167831113|dbj|BAG08029.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328]
          Length = 312

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 165/311 (53%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               HVP+LL + I  LN   GK+ +D T G  G+SR   K      +I  D+D  A+  
Sbjct: 1   MEFKHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ + ++ ++    +  F  +++ + +   + VDG++ D+GVSS QID   RGFS+   
Sbjct: 61  AKQRLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   SA D+VN  + +DL  ++    +EK A RIA  I   R++ P  TT 
Sbjct: 121 ADLDMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTF 180

Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L  +I+K +      N + H A ++FQA+RI VN E++ L Q +  +   L   G + +
Sbjct: 181 ELVEVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLED++ K  F  R    +    +      H    + IT+K + P++E++  N R+
Sbjct: 241 ITFHSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKEELEQNSRA 300

Query: 307 RSAKLRAGMRT 317
           RSAKLR   + 
Sbjct: 301 RSAKLRVAEKI 311


>gi|16804080|ref|NP_465565.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes EGD-e]
 gi|224498509|ref|ZP_03666858.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes Finland
           1988]
 gi|224501159|ref|ZP_03669466.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-561]
 gi|254827071|ref|ZP_05231758.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N3-165]
 gi|284802488|ref|YP_003414353.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578]
 gi|284995630|ref|YP_003417398.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923]
 gi|20138988|sp|Q8Y5L7|RSMH_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16411511|emb|CAD00119.1| lmo2041 [Listeria monocytogenes EGD-e]
 gi|258599454|gb|EEW12779.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N3-165]
 gi|284058050|gb|ADB68991.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578]
 gi|284061097|gb|ADB72036.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923]
          Length = 312

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|149181747|ref|ZP_01860239.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1]
 gi|148850595|gb|EDL64753.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1]
          Length = 310

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           + +H  VLL++ +  L+     V +D T G  G+S            +   D+D  A+  
Sbjct: 1   MFEHTTVLLKETVDGLDIKEDGVYVDCTLGGAGHSEYLVSQLGVTGKLYCFDQDQTAIDH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y ++ +  ++ F  +++ + +     VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLAPYLDRVTFIRSNFRFIKEELAERGVHQVDGVMFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   G  +A +VVNQ   + L RI    GEEK + +IA  I   R+    +TT 
Sbjct: 121 APLDMRMDLEGDLTAHEVVNQWPYEKLVRIFFRYGEEKFSKQIARKIEAAREIKSIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +    +    HPA R FQA+RI VN+E++ + + L  + + LK  G + V+
Sbjct: 181 ELVDLIKEGIPAPARRKGGHPAKRVFQAIRIAVNDELDAVEEALEKSIEILKPSGRISVI 240

Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  + SG  +     +  +A+    + +T+K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRITKTLFKEKASGPDLPHGLPVIPDAYKPELKLVTRKPILPSEEELERNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|46908277|ref|YP_014666.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype
           4b str. F2365]
 gi|254826203|ref|ZP_05231204.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-194]
 gi|255520499|ref|ZP_05387736.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-175]
 gi|51316263|sp|Q71XX2|RSMH_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46881548|gb|AAT04843.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype
           4b str. F2365]
 gi|293595444|gb|EFG03205.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-194]
          Length = 312

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|167854991|ref|ZP_02477765.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755]
 gi|167853839|gb|EDS25079.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755]
          Length = 312

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H+ VLL + +  L   P  + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   SDSPKHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +           +F +  + FS + D   +      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEANTI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSF 118

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA + + Q +V DL  +L   GEE+ A RIA A+V   +SA  +
Sbjct: 119 MRDGPLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEK 178

Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            ++ L  +     V   K+   HPATRSFQA+RI++N+E++EL + L SA   L   G L
Sbjct: 179 ISRTLQLVQIIADVVPFKDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++SFHSLEDR+VK+F   +S      + +    S  +  +      K ++P++ ++  N
Sbjct: 239 SIISFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA LR   +
Sbjct: 299 PRSRSAVLRVAEK 311


>gi|69244718|ref|ZP_00602982.1| methyltransferase [Enterococcus faecium DO]
 gi|257879362|ref|ZP_05659015.1| methyltransferase [Enterococcus faecium 1,230,933]
 gi|257881772|ref|ZP_05661425.1| methyltransferase [Enterococcus faecium 1,231,502]
 gi|257890188|ref|ZP_05669841.1| methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893516|ref|ZP_05673169.1| methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558804|ref|ZP_05830993.1| methyltransferase [Enterococcus faecium C68]
 gi|293553181|ref|ZP_06673818.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039]
 gi|293560478|ref|ZP_06676970.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162]
 gi|293568304|ref|ZP_06679628.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071]
 gi|294621599|ref|ZP_06700764.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317]
 gi|314937875|ref|ZP_07845191.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04]
 gi|314941366|ref|ZP_07848259.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C]
 gi|314950125|ref|ZP_07853411.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082]
 gi|314951334|ref|ZP_07854388.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A]
 gi|314992835|ref|ZP_07858236.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B]
 gi|314997995|ref|ZP_07862890.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01]
 gi|68196309|gb|EAN10738.1| methyltransferase [Enterococcus faecium DO]
 gi|257813590|gb|EEV42348.1| methyltransferase [Enterococcus faecium 1,230,933]
 gi|257817430|gb|EEV44758.1| methyltransferase [Enterococcus faecium 1,231,502]
 gi|257826548|gb|EEV53174.1| methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829895|gb|EEV56502.1| methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075263|gb|EEW63576.1| methyltransferase [Enterococcus faecium C68]
 gi|291589016|gb|EFF20840.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071]
 gi|291598764|gb|EFF29816.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317]
 gi|291602591|gb|EFF32806.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039]
 gi|291605626|gb|EFF35068.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162]
 gi|313588007|gb|EFR66852.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01]
 gi|313592639|gb|EFR71484.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B]
 gi|313596551|gb|EFR75396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A]
 gi|313599789|gb|EFR78632.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C]
 gi|313642733|gb|EFS07313.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04]
 gi|313643566|gb|EFS08146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082]
          Length = 319

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 171/312 (54%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y  +   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  +SA  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++  N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELTENNR 302

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 303 SRSAKLRIAEKI 314


>gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 332

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 189/313 (60%), Gaps = 8/313 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
              H+PVLL++VI  L+P  G + +D TFGAGGYSR+  +   + VIA DRDP A+  G 
Sbjct: 7   SAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GP
Sbjct: 67  ALVEKYKGRLRLVNDCFSNIDHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGP 126

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P  TT  L+
Sbjct: 127 LDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G L VV+FHS
Sbjct: 184 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHS 243

Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +G+     RH         VF S   + V   + ++A N R+RSA L
Sbjct: 244 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATL 303

Query: 312 RAGMRTVERSIED 324
           RA  RT     ED
Sbjct: 304 RAVYRTETPFSED 316


>gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 332

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 190/313 (60%), Gaps = 8/313 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
              H+PVLL++VI  L+P  G + +D TFGAGGYSR+  +   + VIA DRDP A+  G 
Sbjct: 7   SAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66

Query: 76  ETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GP
Sbjct: 67  SLVEKYKGRLRLVNDCFSNIGHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGP 126

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P  TT  L+
Sbjct: 127 LDMRMAQTGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK+ G L VV+FHS
Sbjct: 184 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKSKGCLAVVTFHS 243

Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +G+     RH         VF S   + V   + ++A N R+RSA L
Sbjct: 244 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATL 303

Query: 312 RAGMRTVERSIED 324
           RA  RT     ED
Sbjct: 304 RAVYRTETPFSED 316


>gi|297583942|ref|YP_003699722.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10]
 gi|297142399|gb|ADH99156.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10]
          Length = 317

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H  VL E+ +  L   PG V +D T G GG+S    +       +IA D+D  A++ 
Sbjct: 1   MFEHDTVLREETVEGLAIRPGGVYVDCTLGGGGHSERILQELGEDGKLIAFDQDESAIAH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++ Y ++  + +  F  L++ +     + VDG++FDLGVSS Q D  +RGFS++  
Sbjct: 61  AKERLKPYGDRLHIVKRNFRFLKEELEKLGYREVDGIIFDLGVSSPQFDVPERGFSYRFD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +   +A  V+N+ + +DL +I    GEEK A  IA  I K R++ P +TT 
Sbjct: 121 APLDMRMDQTSELTAHKVINEWSFEDLMKIFSRYGEEKFAKYIARKIEKYRETKPVETTF 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQA+RI VN+E+    + L  A      GG + V+
Sbjct: 181 ELVEIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELGVFEKALEDAVTMTAPGGRIAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S      R M      +  V + I +K +    +++  N RS 
Sbjct: 241 TFHSLEDRICKQLFRKLSQPPELPRGMPVVPEGYEPVLKLINRKPITANVDELDDNHRSH 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
 gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
          Length = 337

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 143/338 (42%), Positives = 205/338 (60%), Gaps = 9/338 (2%)

Query: 9   MS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDR 66
           MS +  +     H+PVLL  ++  + P    + +D TFGAGGYSR+    G++ + A+DR
Sbjct: 1   MSIAQSYPPSSPHIPVLLTPILDSVKPIS-GIWVDGTFGAGGYSRAILDAGADTLYAIDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123
           DP   +  ++  +DY  +  L   TFS L  +V +     +DGVV D+GVSSMQ+D  +R
Sbjct: 60  DPEVFARAKKWAKDYDGRLKLIHGTFSDLDTHVKNAGTDLIDGVVLDIGVSSMQLDQAER 119

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF K GPLDMRM  SG+SA+D+VN    K L  ++ + GEE+ + RIA  IVK R++ 
Sbjct: 120 GFSFMKDGPLDMRMGQSGMSAADIVNSVEEKVLADLIYLYGEERASRRIARNIVKSRENL 179

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            F+TT  L  +I+ ++   K  + HPATR+FQALRI VN+E+ +L  GLR+AE  L+ GG
Sbjct: 180 KFETTFQLVKVIEASLPRPKPGQTHPATRTFQALRIAVNDELGQLVSGLRAAENILREGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           LL VV+FHSLEDR+VK+F  +RSG      R+        A F+ I +K +   ++++  
Sbjct: 240 LLAVVTFHSLEDRIVKRFIQARSGNNPRGNRYQPEKTNDIATFEKIGRKAIAANKDEINS 299

Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQF 339
           N R+RSAKLR   R    S E  +F + LP+   L Q 
Sbjct: 300 NPRARSAKLRLARRLNTTSGEFSAFDIGLPK-FNLGQL 336


>gi|238022305|ref|ZP_04602731.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147]
 gi|237866919|gb|EEP67961.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147]
          Length = 324

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 170/324 (52%), Gaps = 12/324 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+ A       H+ VLL + +  LN     + +D TFG GG+SR           ++  D
Sbjct: 1   MNLAAKPKSFQHITVLLNEAVDALNIQENGIYVDGTFGRGGHSRLILSKLGEKGRLVVFD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  ++ +     + S+    FS  Q  + +     +DG +FDLG+SS QID   
Sbjct: 61  KDPQAIAVARD-LAAQDARVSVVHNGFSHFQAALDELGVAKIDGALFDLGISSPQIDDAS 119

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G SA+D +  A+  ++  ++   GEE+ +  IA AIV +R 
Sbjct: 120 RGFSFRFDAPLDMRMDTTRGQSAADWLAVASEDEINEVIKNYGEERFSRAIARAIVAQRG 179

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT  L+ +  + V  ++     PATR+FQA+RIF+N E++E+   L  A + L  
Sbjct: 180 ETPIDTTSKLAKIAAQCV-RTRERGQDPATRTFQAIRIFINRELDEIQAVLPQAVERLNL 238

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDRLVK+F    +      +  +   ++      ++I  K +  + E+
Sbjct: 239 GGRLAVIAFHSLEDRLVKQFIRQYATHAPLPKWAMVREADLPQPPLRAI-GKAIKASAEE 297

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           VA N R+RSA LR   RT  R   
Sbjct: 298 VAANPRARSAVLRVAERTAGRFDF 321


>gi|254831717|ref|ZP_05236372.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 10403S]
          Length = 312

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I + R+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERHREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|187934997|ref|YP_001886637.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str.
           Eklund 17B]
 gi|263446060|sp|B2TS30|RSMH_CLOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187723150|gb|ACD24371.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str.
           Eklund 17B]
          Length = 310

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               H+ VLL + +  L+     + +D T G  G+S    +  SN   +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++ ++       + F  + + + +     VDG++ DLGVSS Q+D G RGFS+ K
Sbjct: 61  AAKERLKRFEN-VKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  +  SA ++VN+ +  +L +I+   GEE+ A RI++ IV RR   P +TT
Sbjct: 120 DAPLDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN+E++ L Q +      LK GG + +
Sbjct: 180 MELVDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +      R             + I++K + PT+E+V  N RS
Sbjct: 240 ITFHSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLISRKGIEPTKEEVEENPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIIEK 309


>gi|332288560|ref|YP_004419412.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179]
 gi|330431456|gb|AEC16515.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179]
          Length = 321

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 20/323 (6%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
              + ++   H  VLL + +  L   P  + +D TFG GG+SR    +      +IA+DR
Sbjct: 1   MEQVTYSDPSHFTVLLNEAVDGLAIKPNGIYIDGTFGRGGHSRRILSLLGEHGRLIAIDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGD 122
           DP A++  Q        +FS+    FS++ +          +DG++ DLGVSS Q+D  +
Sbjct: 61  DPQAIAAAQSI---QDPRFSIEHHNFSEINEICEKYQLIGKIDGILLDLGVSSPQLDQAE 117

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA+  + Q +  DL  +L   GEE+ A RIA  IV+  Q
Sbjct: 118 RGFSFMQDGPLDMRMDTTKGLSAAQWLQQVSESDLAWVLKTFGEERFAKRIARNIVQFNQ 177

Query: 182 SAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            A    T+ L+  +Q           K    HPATRSFQA+RIF+N+E+EEL + L +A 
Sbjct: 178 QAKLNGTEPLTRTLQLAQLIAQSIPLKEKHKHPATRSFQAIRIFINSELEELEKILTAAI 237

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVV 293
             L   G L ++SFHSLEDRLVK+F   +S      R +  +          + I  K +
Sbjct: 238 DVLAPQGRLSIISFHSLEDRLVKRFMKKQSKGDDIPRGLPLTEDQIERNQKLKII-GKAI 296

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+++++A N RSRSA LR   R
Sbjct: 297 MPSEQEIAVNSRSRSAVLRVAER 319


>gi|325684346|gb|EGD26515.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 314

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 165/313 (52%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+  
Sbjct: 1   MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            Q         D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGF
Sbjct: 61  AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGF 120

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++    LDMRM       A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P
Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKP 180

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I++ +  + + +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG
Sbjct: 181 IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++F S ED++VK+ F   S   +     +         + + +K +  ++E++A N
Sbjct: 241 RISVITFQSSEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN 300

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 301 NRSHSAKLRVAEK 313


>gi|116873471|ref|YP_850252.1| S-adenosyl-methyltransferase MraW [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123461323|sp|A0AKE1|RSMH_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116742349|emb|CAK21473.1| S-adenosyl-methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 312

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKMKLADYSDKVTFIKANFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPELPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|315283083|ref|ZP_07871351.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120]
 gi|313613270|gb|EFR87146.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120]
          Length = 312

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AEIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  +VN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTIVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|227550453|ref|ZP_03980502.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330]
 gi|257897144|ref|ZP_05676797.1| methyltransferase [Enterococcus faecium Com12]
 gi|293377368|ref|ZP_06623572.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1]
 gi|227180354|gb|EEI61326.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330]
 gi|257833709|gb|EEV60130.1| methyltransferase [Enterococcus faecium Com12]
 gi|292644060|gb|EFF62166.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1]
          Length = 319

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN     V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKSDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y  +   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  ++A  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +    +    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 303 SRSAKLRIAEKI 314


>gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 334

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 150/329 (45%), Positives = 195/329 (59%), Gaps = 22/329 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           MS  +      H  VLL +V+  L P  GKV LDATFG GGYSR+        VIA+DRD
Sbjct: 1   MSGQML-----HQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRD 55

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---------------KGVDGVVFDLG 112
           P A++ GQ+ + +YK +F+L +  FS++Q  V                   +DG  FDLG
Sbjct: 56  PDAIARGQKMVAEYKPRFTLVEGCFSEMQSLVQSALVSTGSGSTSHADVPVLDGAAFDLG 115

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           V S Q+D  DRGFSF++ GPLDMRMS SGISA+D+V      D+ +IL   GEEK + RI
Sbjct: 116 VCSTQLDQADRGFSFRQDGPLDMRMSQSGISAADIVMTHEEHDIAQILWEYGEEKASRRI 175

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           A AIVK R      +T  L+++I   +   +  +I PATRSFQALRI+VN E++EL   L
Sbjct: 176 AKAIVKARSETAISSTSQLAAIIHSVMPAKRPGQIDPATRSFQALRIYVNRELDELKSAL 235

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKK 291
            ++E  LK GG+L VVSFHSLEDR+VK+F ASRS       RH  PSN     F+ +T+K
Sbjct: 236 TTSEAMLKPGGILAVVSFHSLEDRIVKRFLASRSQIASQPSRHRPPSNGPAPTFELLTRK 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            +     +   N R+RSAKLR  MRT   
Sbjct: 296 ALQAGTREREDNSRARSAKLRVAMRTNAP 324


>gi|300811319|ref|ZP_07091816.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497683|gb|EFK32708.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 314

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+  
Sbjct: 1   MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            Q         D + +  L    FS L++ +    +   DG+ +DLGVSS Q+D  +RGF
Sbjct: 61  AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGF 120

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++    LDMRM       A  +VNQ + K L  +L   G+EK + +IA  IV+RR++ P
Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKP 180

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I++ +  + + +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG
Sbjct: 181 IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++F SLED++VK+ F   S   +     +         + + +K +  ++E++A N
Sbjct: 241 RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN 300

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 301 NRSHSAKLRVAEK 313


>gi|313114876|ref|ZP_07800375.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622826|gb|EFQ06282.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 321

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/315 (35%), Positives = 169/315 (53%), Gaps = 8/315 (2%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIAL 64
            +A      +H+PVLL + +  L+  P    LD T G  G+SR        + G  +I+L
Sbjct: 6   QAAFDPASFEHIPVLLNECLEGLSIDPAGTYLDGTAGGAGHSRQIALRLDAEKGGRLISL 65

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           D+DP AV   +  +             ++ Q  + +    V+G + DLGVSS Q+D   R
Sbjct: 66  DQDPDAVQTARARLAGLPATVVQINFRYAGQALESLGIDKVNGALLDLGVSSHQLDDAAR 125

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFS++   PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R+++
Sbjct: 126 GFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPFAWQIAGRIVEARENS 185

Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  G
Sbjct: 186 PIETTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPG 245

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G L V++FHSLEDRLVK  F   S                 A  + IT+K +    +++ 
Sbjct: 246 GRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANSQELE 305

Query: 302 FNRRSRSAKLRAGMR 316
            NRRSRSA LR   +
Sbjct: 306 ENRRSRSAHLRVLEK 320


>gi|313123436|ref|YP_004033695.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279999|gb|ADQ60718.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 314

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+  
Sbjct: 1   MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            Q         D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGF
Sbjct: 61  AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGF 120

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++    LDMRM       A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P
Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKP 180

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I++ +  + + +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG
Sbjct: 181 IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++F SLED++VK+ F   S   +     +         + + +K +  ++E++A N
Sbjct: 241 RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN 300

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 301 NRSHSAKLRVAEK 313


>gi|23012863|ref|ZP_00052852.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Magnetospirillum
           magnetotacticum MS-1]
          Length = 319

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 140/315 (44%), Positives = 191/315 (60%), Gaps = 8/315 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSC 73
            ++  H+PVLL +VIA L P  G   +D TFGAGGYSR+       +V A+DRDP AV+ 
Sbjct: 2   SSLPPHIPVLLTEVIAALAPRDGGAYVDGTFGAGGYSRAILSAAACHVHAIDRDPSAVAR 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+        +FS+ +  F  +   + +     VDG+  D+GVSSMQID  +RGFSF K 
Sbjct: 62  GKTLEEASAGRFSMIEGRFGDMAALLRERGVNQVDGIALDIGVSSMQIDQPERGFSFAKD 121

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN     +L  I+   GEE+ + R+A AIV+ R+   F+ T +
Sbjct: 122 GPLDMRMETKGPSAADMVNDTPEGELANIIYRYGEERLSRRVAKAIVEARRIKRFERTGE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I++ V  S  + I PATR+FQALRI VN+E+ EL +GL +AE  L  GG L VV+F
Sbjct: 182 LAEVIRRVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAEHLLAPGGHLAVVTF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F  SRSG+       +P    N   A F  +++K + P QE+   N R+R
Sbjct: 241 HSLEDRVVKSFLKSRSGEASRPSRHVPQAQDNGPAASFTLLSRKAIAPGQEESRANPRAR 300

Query: 308 SAKLRAGMRTVERSI 322
           SAKLRA  RT   + 
Sbjct: 301 SAKLRAAARTEAPAW 315


>gi|288553170|ref|YP_003425105.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4]
 gi|288544330|gb|ADC48213.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4]
          Length = 311

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV VL E+ +  L   P  + +D T G  G+S    +      ++ A D+D  A+S 
Sbjct: 1   MFTHVTVLKEESVNGLAIKPDGIYVDCTLGGAGHSSLILEQLNDEGHLYAFDQDDTALSN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  YK +F+L ++ F  L++ +       VDGV+FDLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AEEVLAPYKGKFTLIRSNFRFLREELAKHGISKVDGVLFDLGVSSPQLDEAERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A  VVN+     L  I+   GEEK A +IA  I  RR+    +TT 
Sbjct: 121 AALDMRMDQTAPLTAHQVVNEWEFNRLVSIISRYGEEKFAKQIARKIEARREIKTIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQA+RI VN+E+    + L  A       G + V+
Sbjct: 181 ELVEIIKDAIPAPARRTGGHPAKRTFQAIRIAVNDELGSFEEALEDAITITNPKGRICVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F  +S        +           + IT+K +V   E++  N R+R
Sbjct: 241 TFHSLEDRLCKEIFKEKSKGPDLPPGLPVIPEGFEPELKLITRKPIVAGNEELTANNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|160895291|ref|ZP_02076062.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50]
 gi|156862984|gb|EDO56415.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50]
          Length = 314

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 175/310 (56%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ I  LN  P  V +D T G  G+SR   K      ++I +D+D  A++
Sbjct: 1   MEFKHTSVLLDETIENLNIKPNGVYMDGTLGGAGHSREIAKRLGSDGHLIGIDQDGEAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E + +Y ++ ++ +  +   +  + +     VDG++ DLGVSS Q+D  DRGF+++ 
Sbjct: 61  TAKERLAEYGDRITVVRDNYQNFKSILDELNISQVDGILLDLGVSSYQLDNADRGFTYRV 120

Query: 130 SGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM       + D+VN    ++L  IL   GEE+ A  IA+ IVK R++   +TT
Sbjct: 121 DAPLDMRMDDRQTKTAKDIVNGYTEQELFHILKEYGEERFAKSIAYHIVKYRENKEIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           ++L+ +I+ ++    +N + HP+ ++FQA+RI +N+E+E L   +      LK GG L +
Sbjct: 181 EELNDIIRGSIPAKVRNAQGHPSKQTFQAIRIELNHELEVLTNSIDGMIDCLKPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F       +   +    +    +  + IT+K ++PT+E++  N RS
Sbjct: 241 ITFHSLEDRIVKNAFRKNENPCICPPNFPVCTCGRKSKGKVITRKPILPTEEEMEINSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   +
Sbjct: 301 KSAKLRVFEK 310


>gi|219870383|ref|YP_002474758.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis SH0165]
 gi|263456048|sp|B8F3A8|RSMH_HAEPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219690587|gb|ACL31810.1| S-adenosyl-methyltransferase MraW involved in cell envelope
           biogenesis [Haemophilus parasuis SH0165]
          Length = 312

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 169/313 (53%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H+ VLL + +  L   P  + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   SDSPKHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +           +F +  + FS + D   +      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEANTI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSF 118

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA + + Q +V DL  +L   GEE+ A RIA A+V   +SA  +
Sbjct: 119 MRDGPLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEK 178

Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            ++ L        V   K+   HPATRSFQA+RI++N+E++EL + L SA   L   G L
Sbjct: 179 ISRTLQLAQIIADVVPFKDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++SFHSLEDR+VK+F   +S      + +    S  +  +      K ++P++ ++  N
Sbjct: 239 SIISFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA LR   +
Sbjct: 299 PRSRSAVLRVAEK 311


>gi|16801213|ref|NP_471481.1| S-adenosyl-methyltransferase MraW [Listeria innocua Clip11262]
 gi|20139025|sp|Q929X6|RSMH_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16414661|emb|CAC97377.1| lin2147 [Listeria innocua Clip11262]
          Length = 312

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + +Y ++ +  ++ F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L +A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKYLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|188587754|ref|YP_001921594.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777689|ref|ZP_04820609.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|263446056|sp|B2V4W0|RSMH_CLOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188498035|gb|ACD51171.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082004|gb|EES47894.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 310

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 170/310 (54%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               H+ VLL + +  L+     + +D T G  G+S    +  SN   +I +D+D  A+ 
Sbjct: 1   MEFKHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++ ++       + F  + + + +     VDG++ DLGVSS Q+D G RGFS+ K
Sbjct: 61  AAKERLKRFEN-VKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  +  SA ++VN+ +  +L +I+   GEE+ A RI++ IV RR   P +TT
Sbjct: 120 DAPLDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN+E++ L Q +      LK GG + +
Sbjct: 180 MELVDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +      R             + +++K + PT+E+V  N RS
Sbjct: 240 ITFHSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLVSRKGIEPTKEEVEENPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIIEK 309


>gi|154252855|ref|YP_001413679.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans
           DS-1]
 gi|262824741|sp|A7HVT9|RSMH_PARL1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154156805|gb|ABS64022.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans
           DS-1]
          Length = 339

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 148/335 (44%), Positives = 209/335 (62%), Gaps = 6/335 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67
           MS    ++   H+PV+L  V+ +L P  G V +D TFGAGGY+R+        V+A+DRD
Sbjct: 1   MSDNGQNSASPHIPVMLADVLDVLKPRDGGVYVDGTFGAGGYTRAILGSADCAVLAIDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
           P A+  G+    ++  + +L +  F  ++  V +     VDGVV D+GVSSMQ+D  +RG
Sbjct: 61  PTAILRGRALATEFAGRLTLIEGRFGDMKRLVRELGHGTVDGVVLDIGVSSMQLDQAERG 120

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQ+ GPLDMRM   G SA+DVVN  +  DL RI+ + GEEK+A  +A AIV  RQ+A 
Sbjct: 121 FSFQQDGPLDMRMGGEGPSAADVVNHFDEADLARIIAVYGEEKRARAVARAIVAARQTAE 180

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T +L+ L+   ++    +RIHPATR+FQALRIFVN+E+ ELA+GL  AE  L  GG 
Sbjct: 181 LHRTLELADLVASVIHRKPQDRIHPATRTFQALRIFVNDELGELARGLSGAEDLLHEGGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L VV+FHSLEDR+VK+F  +R+G+   A R+M   +     F+ I  K +  ++E+V  N
Sbjct: 241 LAVVAFHSLEDRIVKRFLTARTGRAGRANRYMPERDEVAPSFREIAHKAMKASEEEVEIN 300

Query: 304 RRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLS 337
            R+RSAKLRA  RT   ++  D + +    +PTL 
Sbjct: 301 VRARSAKLRAAERTAAPALPLDLAALGFRAVPTLD 335


>gi|325679058|ref|ZP_08158652.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8]
 gi|324109182|gb|EGC03404.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8]
          Length = 319

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 164/309 (53%), Gaps = 4/309 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           HVPVLLE+ I  L+  P  +  D T G  G+S+   K      +I++DRDP AV+   E 
Sbjct: 5   HVPVLLEECIEGLDIKPDGIYCDGTAGGAGHSKEIAKRLTTGRLISVDRDPEAVAVATER 64

Query: 78  MRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +            +   ++ + +   G DG++ DLGVSS Q+D  +RGFS+    PLDMR
Sbjct: 65  LAGLPATVVRGNYSELDEIFERLGLSGADGILMDLGVSSYQLDNAERGFSYHADAPLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G+SA DVVN  + K L RI+   GEEK +  IA  IV+ RQ  P +TT +L+ +I+
Sbjct: 125 MSSEGLSARDVVNGYDEKTLARIIFEYGEEKYSRSIARRIVEARQVRPIETTLELAEIIK 184

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             V        +P  ++FQA+RI VN E+E L+  L  A   L  GG L +++FHSLEDR
Sbjct: 185 TGVPQKVRREKNPCKKTFQAIRIEVNAELEHLSVALDKAFDLLNVGGRLCIITFHSLEDR 244

Query: 257 LVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           LVK+ F       +                + +T+K + PT+ +   N+R+ SAKLR   
Sbjct: 245 LVKQRFRGFCQGCVCPPDFPVCVCGRTPRGRLVTRKPIEPTERENTENKRAHSAKLRIIE 304

Query: 316 RTVERSIED 324
           +  E    +
Sbjct: 305 KIKEEKDPN 313


>gi|163738706|ref|ZP_02146120.1| methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|163741583|ref|ZP_02148974.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10]
 gi|161385317|gb|EDQ09695.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10]
 gi|161388034|gb|EDQ12389.1| S-adenosyl-L-methionine-dependent methyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 335

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 209/328 (63%), Gaps = 6/328 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M++    + G HVPVLL  ++  + P      LD TFGAGGYSR   + G+ +VI +DRD
Sbjct: 1   MTTDRPTSTGPHVPVLLRPLLKAVAPVS-GRWLDGTFGAGGYSRGLLEAGADHVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +  + DY  + +L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAESWIGDYAGRLTLQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+V + +   L  IL + GEE+ + RIA AIVK R  AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFLFGEERASRRIARAIVKARTEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +  SK  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLQLAGIIEHCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK   A R+       P+ F  +T+K V P  E++A N RS
Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEVEETPSQFALVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333
           RSA+LR G RT    IE  +  + +P+L
Sbjct: 298 RSARLRVGRRTEATPIEISAKDIGMPQL 325


>gi|297588285|ref|ZP_06946928.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516]
 gi|297573658|gb|EFH92379.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516]
          Length = 312

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 162/311 (52%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               HVP+LL + I  LN   GK+ +D T G  G+SR   K      +I  D+D  A++ 
Sbjct: 1   MEFKHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALTV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +++Y ++    +  F  ++  + +     VDG++ D+GVSS QID   RGFS+   
Sbjct: 61  AKERLKEYGDKVIFIKDNFKNIKSDLQNIGIEKVDGILMDIGVSSYQIDEDSRGFSYMHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A D+VN  + +DL  I+    EEK A RIA  I   R+  P  TT 
Sbjct: 121 AVLDMRMDQTNPITAKDIVNTYSQEDLENIIFKYSEEKWAKRIAEFICNEREVKPINTTF 180

Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L  +I+K +      N + H A ++FQA+RI VN E++ L Q +      L   G + +
Sbjct: 181 ELVEVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDCIDLLNPEGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLED++ K  F  R    +    +      H    + IT+K + P+ E++  N R+
Sbjct: 241 ITFHSLEDKICKDIFKQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSTEELKQNSRA 300

Query: 307 RSAKLRAGMRT 317
           RSAKLR   + 
Sbjct: 301 RSAKLRVAEKI 311


>gi|220931744|ref|YP_002508652.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168]
 gi|263456084|sp|B8CWI8|RSMH_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219993054|gb|ACL69657.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168]
          Length = 311

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H PVLL++ +  L      + +DAT G GG++    K  ++   VI +DRD  A+  
Sbjct: 1   MLEHKPVLLKESLDYLKCKENGIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIES 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++ Y          F+ +    +    K VDG++FDLGVSS Q D  +RGFS++K 
Sbjct: 61  VKKRLKKYS-SLRTVHDNFTNIPFILEQFNIKAVDGMLFDLGVSSPQFDNPERGFSYRKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  +   +A  +VN  + ++LT I    GEE+ ASRIA+ I+K RQ  P +TT 
Sbjct: 120 GPLDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKSRQHKPIKTTL 179

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+++I+  +  S +    HPA R+FQALRI  N+E+  L + +    K LK GG + ++
Sbjct: 180 QLTTIIKDAIPASARRKGGHPARRTFQALRIATNDELNILKKTINHVVKFLKPGGRICII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VKK F   +   +           H    + ITKK V P + +V  N R+R
Sbjct: 240 SFHSLEDRIVKKTFRELARDCVCPPDFPECVCDHKRKLKIITKKPVKPGENEVENNPRAR 299

Query: 308 SAKLRAGMRTVE 319
           SA+LR   R + 
Sbjct: 300 SARLRVAERVLN 311


>gi|312622933|ref|YP_004024546.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203400|gb|ADQ46727.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 307

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 188/309 (60%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +     + +DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRKLEAYKN-VKIVHSSFSKVDEVLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN  + +DL RI+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNYYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DLS LI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +S
Sbjct: 180 DLSRLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  + +             ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|329766778|ref|ZP_08258308.1| ribosomal RNA small subunit methyltransferase H [Gemella
           haemolysans M341]
 gi|328839289|gb|EGF88871.1| ribosomal RNA small subunit methyltransferase H [Gemella
           haemolysans M341]
          Length = 311

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74
           +  H  VLL + +  LN     + +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLNEAVEGLNIIEDGIYVDCTLGGAGHSLEILKQLKNGKLYAFDQDNIALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + +Y ++    ++ F  L++ + + GV    GV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KNKLAEYSDKVVFIKSNFVNLKEKLAEHGVHEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA +VVN+ +  DL +I    GEE  + +IA  I K+R+  P +TT +
Sbjct: 121 KLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K GG + V++
Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S +      ++  I      +  + IT+K + P+  ++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYAKAKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVAE 307


>gi|226224647|ref|YP_002758754.1| hypothetical protein Lm4b_02062 [Listeria monocytogenes Clip81459]
 gi|254854022|ref|ZP_05243370.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-503]
 gi|254933469|ref|ZP_05266828.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262]
 gi|300765476|ref|ZP_07075457.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N1-017]
 gi|263456339|sp|C1KWZ4|RSMH_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225877109|emb|CAS05821.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607414|gb|EEW20022.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-503]
 gi|293585031|gb|EFF97063.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262]
 gi|300513787|gb|EFK40853.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N1-017]
 gi|332312491|gb|EGJ25586.1| Ribosomal RNA small subunit methyltransferase H [Listeria
           monocytogenes str. Scott A]
          Length = 312

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|312794111|ref|YP_004027034.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181251|gb|ADQ41421.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 307

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 193/309 (62%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +     + +DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRRLEGYKN-IKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DV+N  + +DL RI+   GEE+ A RIA AIV+RR++ P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LSSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +S
Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  + +           + ITKK +VP++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAQKV 307


>gi|56696072|ref|YP_166426.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3]
 gi|68565435|sp|Q5LU79|RSMH_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56677809|gb|AAV94475.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3]
          Length = 331

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 151/329 (45%), Positives = 208/329 (63%), Gaps = 7/329 (2%)

Query: 9   MS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66
           MS +A   +   H+PVLL  ++A + P    + LD TFGAGGY+R     G+  VIA+DR
Sbjct: 1   MSRTAAPPSDDPHIPVLLRPLLAAVAPVS-GIWLDGTFGAGGYTRGLLAAGADRVIAVDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A        +DY ++  + Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFS
Sbjct: 60  DPLAFELAAGWAKDYGDRLVMQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFS 117

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F K GPLDMRMS  G SA+D+VN A   DL  IL   GEE+ + RIA AIVK R  AP +
Sbjct: 118 FMKDGPLDMRMSQEGPSAADLVNTATEADLADILFHYGEERASRRIARAIVKARAEAPIE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L++L++  +   K  + HPATRSFQALRI VN E +EL +GL +AE+ALK GG L 
Sbjct: 178 TTLQLAALVESCLPRPKPGQSHPATRSFQALRIAVNAEYDELFEGLMAAERALKPGGKLA 237

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           VV+FHS+EDR+VK+F  +R+G    A R+   +      F+ +++K + P  +++A N R
Sbjct: 238 VVTFHSIEDRMVKRFLQARAGRSGRANRYAPETVEDAPQFELLSRKAIGPDDQELAENPR 297

Query: 306 SRSAKLRAGMRTVERSIE-DDSFVHLPRL 333
           +RSAKLR  +RT   +   D   + +P+L
Sbjct: 298 ARSAKLRVALRTDAPAGAVDAKSIGMPQL 326


>gi|328472688|gb|EGF43546.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 220]
          Length = 315

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 170/312 (54%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +   
Sbjct: 301 SAKLRVIEKLSN 312


>gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 332

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 136/312 (43%), Positives = 189/312 (60%), Gaps = 8/312 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PVLL++VI  L+P  G + +D TFGAGGYSR+  +   + VIA DRDP A+  G  
Sbjct: 8   APHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAS 67

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GPL
Sbjct: 68  LVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGPL 127

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P  TT  L+ 
Sbjct: 128 DMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLAK 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G L VV+FHSL
Sbjct: 185 VIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHSL 244

Query: 254 EDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK F    +G+     RH         VF S   + V   + ++A N R+RSA LR
Sbjct: 245 EDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATLR 304

Query: 313 AGMRTVERSIED 324
           A  RT     ED
Sbjct: 305 AVYRTETPFSED 316


>gi|312128123|ref|YP_003992997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778142|gb|ADQ07628.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 307

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +       +DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRRLEAYKN-IKIVHSSFSKVDEVLESLGIAKIDGILFDFGVSSLQLDKQERGFSYSKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN  + +DL RI+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DLSSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  +   LK+GG +  +S
Sbjct: 180 DLSSLISSLVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKVALEKSLGFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  + +           + ITKK +VP++E++  NRRS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKQLEIITKKPIVPSKEEIERNRRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAQKV 307


>gi|138894646|ref|YP_001125099.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans
           NG80-2]
 gi|196247745|ref|ZP_03146447.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16]
 gi|263455979|sp|A4IM00|RSMH_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134266159|gb|ABO66354.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212529|gb|EDY07286.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16]
          Length = 310

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN  P  V +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLNVRPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  Y+EQ       F  LQ+ +       VDG++FDLGVSS Q+D  +RGFS+Q  
Sbjct: 61  ASERLARYREQVQFINRNFRFLQEELSALGIHAVDGILFDLGVSSPQLDEPERGFSYQHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A+++VN+   ++L RI    GEEK + ++A  I + R+  P +TT 
Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRKRPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++ +  HPA R FQALRI VN+E+E   + L  A + L  GG + V+
Sbjct: 181 ELVEVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S    +     +  + +  V + ITKK VVP+ E++  N R+R
Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPVVPSAEELERNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|313637016|gb|EFS02589.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL S4-171]
          Length = 312

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNEHGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|313622989|gb|EFR93285.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL J1-023]
          Length = 312

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + +Y ++ +  ++ F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAEYSDKVTFIKSNFRYMKETLNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L +A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|47093593|ref|ZP_00231351.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b
           H7858]
 gi|47018017|gb|EAL08792.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b
           H7858]
 gi|328466075|gb|EGF37248.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 1816]
          Length = 312

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A++ 
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAINN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|18310847|ref|NP_562781.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens str. 13]
 gi|20138978|sp|Q8XJ96|RSMH_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|18145529|dbj|BAB81571.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 310

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               HV VLL++ I  LN     + +D T G  G+S            +I  D+D  A+ 
Sbjct: 1   MEFKHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIRFDQDKDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +
Sbjct: 61  AAGERLKDYKN-VTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQ 119

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    +TT
Sbjct: 120 DAPLDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN E+E +++ +    K L  GG + +
Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +                    + I++K +  ++E++ FN RS
Sbjct: 240 ITFHSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIIEK 309


>gi|83942761|ref|ZP_00955222.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36]
 gi|83846854|gb|EAP84730.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36]
          Length = 330

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 146/331 (44%), Positives = 198/331 (59%), Gaps = 6/331 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS         H PVLL  ++A + P      LD TFGAGGY+R     G+  V+A+DRD
Sbjct: 1   MSGPSDTPSAPHTPVLLRPLLAAVAPVS-GRWLDGTFGAGGYTRGLLDAGAAQVVAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    DY ++  + +  FS++ DY  D  +DG+V DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV+ R+ AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L++  +  SK  + HPATRSFQALRI VNNE  EL  GL +AE+ALK GG L V
Sbjct: 178 TLALAGLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G             A    F+ + +K + P  +++  N RS
Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 297

Query: 307 RSAKLRAGMRTVERSIEDD-SFVHLPRLPTL 336
           RSAKLR  +RT   +   D   + +P +  L
Sbjct: 298 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGL 328


>gi|312876343|ref|ZP_07736328.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796837|gb|EFR13181.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 307

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 192/309 (62%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +     + +DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRRLEGYKN-IKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DV+N  + +DL RI+   GEE+ A RIA AIV+RR++ P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LSSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +S
Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK FF   S + +  + +           + ITKK +VP++E++  N+RS S
Sbjct: 239 FHSLEDRIVKGFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAQKV 307


>gi|313607742|gb|EFR83963.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           F2-208]
          Length = 312

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L      + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKSDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|302389508|ref|YP_003825329.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM
           16646]
 gi|302200136|gb|ADL07706.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM
           16646]
          Length = 313

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 173/310 (55%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H PVLLE+ I LL+P PG V +DAT G GG+     K       VI +DRD  AV 
Sbjct: 1   MEFYHKPVLLEETINLLDPKPGGVYVDATLGGGGHFSEILKRVGENGTVIGIDRDEDAVV 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E         ++    F  ++  V     +GVDGV+FDLGVSS Q+D   RGFS+ K
Sbjct: 61  NARERFSQSPAA-TIVHDNFKNIKRIVYSLGLEGVDGVIFDLGVSSYQLDEESRGFSYIK 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +   +A DVVN+    +L +I+   GEE+ A RIA  I ++R+  P +TT
Sbjct: 120 DAPLDMRMDRNQDLTAKDVVNKMTKSELAKIIKEYGEERWADRIAEFICEKRKKKPIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQALRI+VN E+E L+  L+ A   L  GG + V
Sbjct: 180 GELVEIIKAAIPARARRGGPHPAKRTFQALRIYVNGELEILSASLKDAVDILNPGGRICV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +      +   + +       + +T K V PTQ+++  N R+
Sbjct: 240 ITFHSLEDRIVKHTFRELAKGCTCPKDSPLCTCKSERALKILTPKPVCPTQDEIDANPRA 299

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 300 RSAKLRACEK 309


>gi|56419646|ref|YP_146964.1| S-adenosyl-methyltransferase MraW [Geobacillus kaustophilus HTA426]
 gi|68565432|sp|Q5L0Y4|RSMH_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56379488|dbj|BAD75396.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 310

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN  P  + +D T G+GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y  Q       F  LQ+ +     K VDGV+FDLGVSS Q+D  +RGFS+Q  
Sbjct: 61  ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     +A+++VN    ++L RI    GEE+ + ++A  I + R++ P +TT 
Sbjct: 121 APLDMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVRRTRPIKTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    + +  HPA R FQALRI VN+E+E   + L  A + L  GG + V+
Sbjct: 181 ELVDVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S        +    + +  V + ITKK +VP++E++  N R+R
Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNHRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|291166340|gb|EFE28386.1| S-adenosyl-methyltransferase MraW [Filifactor alocis ATCC 35896]
          Length = 310

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 173/305 (56%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H PV+L + I +LN  P  + +D T G  G+S    K      +IA D+D  A+   +  
Sbjct: 5   HKPVMLNECIDMLNIVPSGIYVDGTLGGAGHSLEIVKRLDSGKLIAFDQDIEAIKNAKIK 64

Query: 78  MRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ Y+++  L    F  ++   + +    ++G++ DLGVSS Q+D  +RGFS++   PLD
Sbjct: 65  LKSYEDKVILIHDNFRNIKKSLEDIDIFRINGLLLDLGVSSYQLDSPERGFSYRYDAPLD 124

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ S   SA  +VN  + +DL RI+   GEEK ASRIA  IV+ R   P  TT +L  
Sbjct: 125 MRMNQSSQISAKYIVNTYSEEDLKRIIRDYGEEKWASRIAQFIVEERMKKPIDTTGELVQ 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +    +    HPA R+FQA+RI  N+E++ +   L SA + L  GG++ V++FHS
Sbjct: 185 IIKAAIPKKAREEEQHPAKRTFQAIRIETNHELDVIHDVLESAVELLLPGGVISVITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   S   +    +      H A  +   +K +VP++E++  N RSRSAK+
Sbjct: 245 LEDRIVKNFFRDESTGCICSPEIPVCVCNHQARLRLAHRKPLVPSEEELRENPRSRSAKV 304

Query: 312 RAGMR 316
           R  ++
Sbjct: 305 RGAIK 309


>gi|313632482|gb|EFR99498.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL N1-067]
          Length = 312

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + ++    VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|257438103|ref|ZP_05613858.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           A2-165]
 gi|257199434|gb|EEU97718.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           A2-165]
          Length = 322

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 8/311 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPF 69
               +HVPVLL + +  L   P    LD T G  G+SR        + G  +I+LD+DP 
Sbjct: 12  PASFEHVPVLLNECLDGLKIDPAGTYLDGTAGGAGHSRQIALRLNGEQGGRLISLDQDPD 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           AV   +  +             ++ Q  + +  + ++G + DLGVSS Q+D   RGFS++
Sbjct: 72  AVQTARARLAGLPATVVQINFRYAGQALEQLGIETINGALLDLGVSSHQLDDAARGFSYR 131

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++AP +TT
Sbjct: 132 ADAPLDMRMSQEGETAADLVNSESREELARILRDYGEEPFAWQIAGRIVEARETAPIETT 191

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V
Sbjct: 192 LQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFAHLAPGGRLCV 251

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDRLVK  F   S                 A  + IT+K +    +++  NRRS
Sbjct: 252 ITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANTQELEENRRS 311

Query: 307 RSAKLRAGMRT 317
           RSA LR   + 
Sbjct: 312 RSAHLRVLEKI 322


>gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601]
 gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601]
          Length = 330

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 145/326 (44%), Positives = 199/326 (61%), Gaps = 6/326 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +A       HVPVLL  ++  + P      +D TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 4   AADQDNGAPHVPVLLRPLLKAVAPVS-GTWVDGTFGAGGYARGLLEAGADKVIGIDRDPL 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A    Q  + DY ++  L +  F+ +   +   G DGVV DLGVSSMQ+D  +RGFSF K
Sbjct: 63  AHQMAQAWIGDYGDRLELVEGNFADMDKVIS--GADGVVLDLGVSSMQLDIAERGFSFMK 120

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM  SG SA+D+V + +   L  +L   GEE+ + RIA AIVK R   P +TT 
Sbjct: 121 DGPLDMRMEQSGESAADLVKRLDETALADVLYTYGEERASRRIARAIVKARDQEPIETTA 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            LSS+++  +   K  + HPATRSFQALRI VN+E   L +GL +AE+ALK GG L VV+
Sbjct: 181 RLSSIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAERALKPGGWLCVVT 240

Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHS+EDR+VK+FF +R+G+     RH   +      F+ +T+K V P  E++A N R+RS
Sbjct: 241 FHSVEDRMVKRFFQARTGRLDTVSRHAPVTETEAPRFELLTRKAVGPDDEELAANPRARS 300

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRL 333
           A+LR G RT     E     +++P+L
Sbjct: 301 ARLRIGKRTDAAPGEIGADKLNMPQL 326


>gi|302871361|ref|YP_003839997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574220|gb|ADL42011.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 307

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ +  L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  
Sbjct: 1   MYEHMPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSNKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  +K    +  ++FS+L + +     + +DG++FD GVSS+Q+D  +RGFS+ + 
Sbjct: 61  GKRKLEVHKN-VKIVHSSFSKLDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNQE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN  + KDL RI+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSEKDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LS+LI   V   K+   HPA R+FQA+RI VN+E++E+   L  + + L++GG +  +S
Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNSELDEIKIALEKSLRFLRSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   I           ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPICVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|47097273|ref|ZP_00234832.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899261|ref|ZP_05259185.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes J0161]
 gi|254912599|ref|ZP_05262611.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria
           monocytogenes J2818]
 gi|254936926|ref|ZP_05268623.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900]
 gi|47014346|gb|EAL05320.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609526|gb|EEW22134.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900]
 gi|293590591|gb|EFF98925.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria
           monocytogenes J2818]
          Length = 312

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIKKI 310


>gi|289435382|ref|YP_003465254.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171626|emb|CBH28172.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 312

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + ++    VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALSLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|313888490|ref|ZP_07822157.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845519|gb|EFR32913.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 312

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 168/307 (54%), Gaps = 8/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ I  LN   GK+ LD T G  G+SR   K       +I +D+D  A+   +E
Sbjct: 5   HKSVLLDETIEGLNIREGKIYLDGTLGGAGHSREILKKLKGTGLLIGIDQDIEALEVAKE 64

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + +YK    F+L    F +  D +    +DGV+ D+GVSS Q D  +RGFS++   PLD
Sbjct: 65  RLSNYKNVEFFNLNYINFEKALDELGIDKIDGVLLDIGVSSYQFDNPERGFSYRFDAPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ISA D+VN  +  ++TRI+   GEEK A+RIA  IV  R++   +TT +L  
Sbjct: 125 MRMDQELEISARDIVNTYSESEITRIIKEYGEEKWAARIAKFIVDERKTKNIETTFELVE 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S + N  HPA R+FQALRI VN E++ L   +      L  GG + +++FHS
Sbjct: 185 IIKNAIPASARRNGPHPAKRTFQALRIEVNRELDVLEDSIERFVHRLNPGGRIAIITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F       +      I +       + +T+K +  ++E++  N+RS SAKL
Sbjct: 245 LEDRIVKNAFKYLEKDCICPPSSPICTCDKKKEIKILTRKPITASEEELKENKRSHSAKL 304

Query: 312 RAGMRTV 318
           R   +  
Sbjct: 305 RIAEKLE 311


>gi|220925316|ref|YP_002500618.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS
           2060]
 gi|263456456|sp|B8IMX2|RSMH_METNO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219949923|gb|ACL60315.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS
           2060]
          Length = 339

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 135/316 (42%), Positives = 197/316 (62%), Gaps = 8/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           +  H+PVLL++V + L    G  +++D TFGAGGY+R+  +      VIA+DRDP A++ 
Sbjct: 4   MPPHIPVLLKEVRSALRLGEGPGIVVDGTFGAGGYTRAILEADPGQRVIAIDRDPTAIAT 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130
           G+        +  L Q  F +L   V  +G++ V   V D+GVSSMQ+D   RGFSF++ 
Sbjct: 64  GRGLAAAMAGRLMLVQGRFGELDRLVRAQGIETVDGVVLDIGVSSMQLDQAQRGFSFRQD 123

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN+A+  +L  I+   GEE++A  +A AI++ R+     TT  
Sbjct: 124 GPLDMRMESGGTSAADLVNEASEAELADIIYHYGEERRARAVARAILEARRRGRIATTAT 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++   V     + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+F
Sbjct: 184 LAEIVASVVRPEPGSGIHPATRTFQALRIAVNDELGELQRALHAAERILRPGGRLAVVTF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF++RSG+ ++    +P    PA   F  +TK  + P++ +   N R+RS
Sbjct: 244 HSLEDRIVKQFFSARSGRAVSASRHLPMAEKPAPRSFTLVTKGPIGPSEAEATANPRARS 303

Query: 309 AKLRAGMRTVERSIED 324
           AKLRAG RT     E 
Sbjct: 304 AKLRAGERTDAPIPEP 319


>gi|92116827|ref|YP_576556.1| methyltransferase [Nitrobacter hamburgensis X14]
 gi|91799721|gb|ABE62096.1| methyltransferase [Nitrobacter hamburgensis X14]
          Length = 399

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 150/343 (43%), Positives = 204/343 (59%), Gaps = 11/343 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN 60
            +   + M+++       HVPVL  + +A+L P  G V +DATFGAGGYSR+      + 
Sbjct: 61  SADGGRIMTASPV----RHVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTR 116

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQ 117
           VI +DRD  A++ G   + +   + +L +  FS L           VDG+V D+GVSSMQ
Sbjct: 117 VIGIDRDRSAIAGGFALVEESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQ 176

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           +D  DRGFSF+  GPLDMRMS  G +A+DVV +A+  DL  I+ I GEE+++  +A AIV
Sbjct: 177 LDEADRGFSFRLDGPLDMRMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIV 236

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
             R+ AP  TT+ L+ ++ K V   K + IHPATR+FQALRIFVN E++EL   L +AE+
Sbjct: 237 AARRDAPVATTRALADIVSKVVRA-KPHEIHPATRTFQALRIFVNEELDELIAALAAAER 295

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L+ GG L VVSFHSLEDR+VK FFA R       RH          F  +T++ V   Q
Sbjct: 296 VLRPGGRLAVVSFHSLEDRIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQ 355

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           E+V+ N R+RSAKLRA  RT   +  DD     P  P+L+   
Sbjct: 356 EEVSANPRARSAKLRAAERTAAPATADDG--ESPGWPSLANVM 396


>gi|2149901|gb|AAC45631.1| unknown [Enterococcus faecalis]
          Length = 319

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 103/319 (32%), Positives = 167/319 (52%), Gaps = 11/319 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69
           +      H  VLL++ +  L   P  V +D TFG  G+S           ++ A D+D  
Sbjct: 1   MMIEEFRHYTVLLKETVDGLQVKPDGVYVDCTFGGAGHSEYLLTQLNEHGHLYAFDQDQK 60

Query: 70  AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124
           A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +RG
Sbjct: 61  ALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  
Sbjct: 121 FSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQ 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L   
Sbjct: 181 PIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKN 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  +++
Sbjct: 241 GRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELS 300

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSAKLR   +   R
Sbjct: 301 ENNRSRSAKLRIAEKIKSR 319


>gi|256852642|ref|ZP_05558013.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8]
 gi|256711987|gb|EEU27024.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8]
          Length = 319

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 11/317 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69
           +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  
Sbjct: 1   MMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQK 60

Query: 70  AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124
           A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +RG
Sbjct: 61  ALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  
Sbjct: 121 FSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQ 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L   
Sbjct: 181 PIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKN 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  +++
Sbjct: 241 GRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELS 300

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RSRSAKLR   +  
Sbjct: 301 ENNRSRSAKLRIAEKIK 317


>gi|29375571|ref|NP_814725.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis V583]
 gi|29343032|gb|AAO80795.1| conserved hypothetical protein TIGR00006 [Enterococcus faecalis
           V583]
          Length = 319

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 102/319 (31%), Positives = 166/319 (52%), Gaps = 11/319 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69
           +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  
Sbjct: 1   MMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQK 60

Query: 70  AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124
           A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +RG
Sbjct: 61  ALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  
Sbjct: 121 FSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQ 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L   
Sbjct: 181 PIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKN 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  +++
Sbjct: 241 GRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELS 300

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSAKLR   +   R
Sbjct: 301 ENNRSRSAKLRIAEKIKSR 319


>gi|322421370|ref|YP_004200593.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18]
 gi|320127757|gb|ADW15317.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18]
          Length = 312

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+ VL ++V+ LL P  G + +D T G  G++            +I  DRD  A++  +E
Sbjct: 6   HISVLPDEVLGLLAPKSGGIYVDGTLGGAGHAGLILAASAPQGQLIGFDRDAEAIAVAKE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  +FQ  FS +   + +     +DG V DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 66  RLAPFGDRVRIFQRNFSSIAQTLAEIGVDAIDGFVLDLGVSSHQLDKDERGFSFQADAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G SA+D+VN  +  +L RI+   GEE+ A R+A  IVK R+  P +TT  L 
Sbjct: 126 DMRMDRSSGPSAADLVNTLSEAELNRIIAEYGEERWAKRVASFIVKAREERPIETTMQLV 185

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  +K   R+HPATR+FQ LRI VN E++ L  GL    K LK GG   V+SFH
Sbjct: 186 DIIKGAIPKAKWEERLHPATRTFQGLRIAVNEELKSLQLGLTDLLKLLKRGGRGAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F   +      +   I        ++ +TKK +   ++++  N RSRSA+
Sbjct: 246 SLEDRIVKEAFRDAAAGCTCPKELPICVCGRVPQYKVLTKKALKAGEKELNANPRSRSAR 305

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 306 LRGIEKI 312


>gi|49474464|ref|YP_032506.1| S-adenosyl-methyltransferase MraW [Bartonella quintana str.
           Toulouse]
 gi|54036185|sp|Q6G116|RSMH_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49239968|emb|CAF26373.1| hypothetical protein BQ08940 [Bartonella quintana str. Toulouse]
          Length = 332

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 163/322 (50%), Positives = 209/322 (64%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G+ VIALDRDP AV  GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLIGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAVREGQSLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL   V +  VD V+ D+GVSSMQ D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLMQMEFSQLDRVVEE-KVDAVILDIGVSSMQFDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A DVVN+    DL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 130 TGFTAGDVVNRLKKDDLARIFKILGEERYAGRIARMIEKRRCVQPFLRTGDLAHAIEALV 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE  LK GG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAESVLKPGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF++RSG     R++    A PA F S+ K  +  ++E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFSARSGGCRRSRYLPEIEAVPATFFSLFKGAITASKEELQQNPRSRSARLRIGIRTEA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
             +  D  + L     ++ F G
Sbjct: 310 ECLAKD--IKLFDFAEIASFEG 329


>gi|257413358|ref|ZP_04742795.2| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
 gi|257203798|gb|EEV02083.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
          Length = 315

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G GG+S    K       +I +D+D  A+    E
Sbjct: 8   HYSVLLNETIENLNIRPDGIYVDGTLGGGGHSYQILKRLGENGRLIGIDQDADAIQAAGE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            + ++  + +L ++ ++ +++ +      GVDG+V DLGVSS Q+D  +RGF+++    P
Sbjct: 68  RLAEFGNKATLIRSNYANMKEELHAIGVNGVDGIVLDLGVSSFQLDTPERGFTYREPDAP 127

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  DL RI+   GE+K A  IA  IVK RQ    +T  +L
Sbjct: 128 LDMRMDDRQSQTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVKERQKKTIETAGEL 187

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +         HPA R+FQA+RI +N+E+E L+  L      L  GG + +++F
Sbjct: 188 TDIIRAAIPMKVQVTGGHPAKRTFQAIRIELNHELEVLSDHLDEMIDLLNPGGRICIITF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F                     +  + IT+K ++P+++++  N RS+SA
Sbjct: 248 HSLEDRIVKSNFKRNENPCTCPSDFPVCVCGKVSKGKVITRKPILPSEKELEENSRSKSA 307

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 308 KLRVFER 314


>gi|294788560|ref|ZP_06753802.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453]
 gi|294483437|gb|EFG31122.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453]
          Length = 320

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 166/312 (53%), Gaps = 11/312 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
            +   H+ VLL + +  LN     V +D TFG GG+SR           +I  D+DP A+
Sbjct: 4   PSEFKHITVLLHEAVDALNIRADGVYVDGTFGRGGHSRLILSRLGESGRLIVFDKDPQAI 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              QE +    ++  +    FS  Q  + +      +DG +FDLG+SS QID   RGFSF
Sbjct: 64  EVAQE-LAKQDKRVKVIHNGFSHFQVALKNDLGLNHIDGALFDLGISSPQIDDASRGFSF 122

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM    G SA+D +  A+ +++  ++   GEE+ + +IA AIV +R+ +P  
Sbjct: 123 RFDAPLDMRMDTTRGQSAADWLAIADEQEIHEVIKNYGEERFSRQIARAIVTQREDSPII 182

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+ +  + V  ++     PATR+FQA+RIF+N E++E+   L      L  GG L 
Sbjct: 183 TTNQLAKITAQVV-RTRERGQDPATRTFQAIRIFINRELDEIQAVLPQVVAHLNIGGRLA 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDRLVK+F  + S      +   I     P        K + P+ +++A N R
Sbjct: 242 VIAFHSLEDRLVKQFIRTHSTHAPLPKWAAIRETDLPQPPLLAVGKAIKPSDDEIAHNPR 301

Query: 306 SRSAKLRAGMRT 317
           +RSA LR   RT
Sbjct: 302 ARSAVLRIAERT 313


>gi|83954000|ref|ZP_00962721.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1]
 gi|83841945|gb|EAP81114.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1]
          Length = 333

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 146/331 (44%), Positives = 198/331 (59%), Gaps = 6/331 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS         H PVLL  ++A + P      LD TFGAGGY+R     G+  V+A+DRD
Sbjct: 4   MSGPSDTPSAPHTPVLLRPLLAAVAPVS-GRWLDGTFGAGGYTRGLLDAGAAQVVAVDRD 62

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    DY ++  + +  FS++ DY  D  +DG+V DLGVSSMQ+D  +RGFSF
Sbjct: 63  PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV+ R+ AP  T
Sbjct: 121 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L++  +  SK  + HPATRSFQALRI VNNE  EL  GL +AE+ALK GG L V
Sbjct: 181 TLALAGLVEGCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G             A    F+ + +K + P  +++  N RS
Sbjct: 241 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 300

Query: 307 RSAKLRAGMRTVERSIEDD-SFVHLPRLPTL 336
           RSAKLR  +RT   +   D   + +P +  L
Sbjct: 301 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGL 331


>gi|317495032|ref|ZP_07953404.1| MraW methylase [Gemella moribillum M424]
 gi|316914804|gb|EFV36278.1| MraW methylase [Gemella moribillum M424]
          Length = 312

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 169/307 (55%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL + +A LN     V +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLNEAVAGLNIKENGVYVDCTLGGAGHSLEILKQLTDGKLYAFDQDSVALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++DY ++    ++ F  L++ + +     VDGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KDKLKDYADKVVFIKSNFKNLREKLLEHGVTEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA ++VN+ +  +L +I    GEEK + +IA  + K+R   P +TT +
Sbjct: 121 RLDMRMDTDAKISAYEIVNEYDYNELVKIFYRYGEEKFSKQIARNVEKKRLEKPIETTFE 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K  G + V++
Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKKDGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S + +    +++        A  + IT+K + PT +++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYAKRKEIPKNLPILPEESLAKLKIITRKPIYPTDKELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRIAE 307


>gi|89099599|ref|ZP_01172474.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911]
 gi|89085752|gb|EAR64878.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911]
          Length = 310

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + DH  VLLE+ +A L+  P  V +D T G  G+S            + A D+D  A+  
Sbjct: 1   MFDHKTVLLEETVAGLDIKPDGVYVDCTMGGAGHSELILTQLSSRGKLYAFDQDETAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            QE +  Y ++ ++ ++ F  L++ +       VDGV++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AQEKLSKYGDKITIIKSNFLHLKEELEKAGVTEVDGVLYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     +SA +VVN    +DL RI    GEEK + +IA  I   R+ AP +TT 
Sbjct: 121 APLDMRMDKDASLSAYEVVNDWPYEDLVRIFFRYGEEKFSKQIARKIEAAREKAPIETTS 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA R FQA+RI VN+E+    + L  A   LK GG + V+
Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEKSLEQAIDILKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +    V + + +K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRICKATFKKASETPPLPPGLPIIPDEFKPVLKLVARKPILPSEEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|302386836|ref|YP_003822658.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
 gi|302197464|gb|ADL05035.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
          Length = 312

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 101/312 (32%), Positives = 173/312 (55%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
            + +H  VLL + I  LN  P  + +D T G GG++   CK       +I +D+D  A+ 
Sbjct: 1   MMFEHKSVLLYETIDSLNVKPDGIYVDGTLGGGGHALEVCKRLGTYGRLIGIDQDGDAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++DY+++ ++ ++ +  +Q  + D   + VDG+  DLGVSS Q+D  +RGF++++
Sbjct: 61  AAAERLKDYEDKVTVVRSNYENIQTVLKDLGIEKVDGIYLDLGVSSYQLDKPERGFTYRE 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       +  +A+D++N  +  DL RI+   GE+K A  IA  IV+ RQ  P +T
Sbjct: 121 DDAPLDMRMDQRNEQTAADIINSYSEFDLYRIIRDYGEDKFAKNIAKHIVRARQGKPIET 180

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+ +I++ +    +    HP+ R+FQA+RI +N E+E L + L +    L  GG L 
Sbjct: 181 TGELTEIIKEAIPARVRAVGGHPSKRTFQAIRIELNKELEVLNKSLDTMIDLLNPGGRLS 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK  F +     +             +  + IT+K +VP++E++  N+R
Sbjct: 241 IITFHSLEDRMVKTRFRTNENPCICPSDFPVCVCGRKSKGKVITRKPIVPSEEEIEENKR 300

Query: 306 SRSAKLRAGMRT 317
           S+S+KLR   R 
Sbjct: 301 SKSSKLRVFERI 312


>gi|293391350|ref|ZP_06635684.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951884|gb|EFE02003.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 322

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 172/325 (52%), Gaps = 18/325 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP AV+  Q+       +F +   TFS++            VDG++ DLGVSS Q+D  
Sbjct: 61  RDPQAVAEAQKI---QDPRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    GISA++ + Q + +DL  +L   GEE+ A RIA  IV   
Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA     + L+  +Q           K+   HPATRSFQA+RI++N E++EL   L+SA
Sbjct: 178 KSAVQNGGEFLARTLQLAELIAQAVPFKDKYKHPATRSFQAIRIYINAELDELENVLQSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
              L   G L V+SFHSLEDR+VK+F   +S   +  + +          +   +  K +
Sbjct: 238 LSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
           +P++ ++  N R+RSA LR   R  
Sbjct: 298 MPSEAEIVQNPRARSAVLRVAERIN 322


>gi|227555099|ref|ZP_03985146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22]
 gi|229548930|ref|ZP_04437655.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC
           29200]
 gi|293382538|ref|ZP_06628472.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712]
 gi|293387861|ref|ZP_06632400.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613]
 gi|307268069|ref|ZP_07549457.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248]
 gi|307272003|ref|ZP_07553269.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855]
 gi|307275472|ref|ZP_07556614.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134]
 gi|307278960|ref|ZP_07560019.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860]
 gi|307289409|ref|ZP_07569363.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109]
 gi|312904551|ref|ZP_07763709.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635]
 gi|312906859|ref|ZP_07765856.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512]
 gi|312952739|ref|ZP_07771601.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102]
 gi|312978886|ref|ZP_07790612.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516]
 gi|227175767|gb|EEI56739.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22]
 gi|229305951|gb|EEN71947.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC
           29200]
 gi|291080086|gb|EFE17450.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712]
 gi|291082708|gb|EFE19671.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613]
 gi|306499664|gb|EFM69027.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109]
 gi|306504347|gb|EFM73558.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860]
 gi|306507860|gb|EFM76988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134]
 gi|306511298|gb|EFM80302.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855]
 gi|306515710|gb|EFM84237.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248]
 gi|310627113|gb|EFQ10396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512]
 gi|310629255|gb|EFQ12538.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102]
 gi|310632064|gb|EFQ15347.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635]
 gi|311288323|gb|EFQ66879.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516]
 gi|315031725|gb|EFT43657.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0017]
 gi|315034218|gb|EFT46150.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0027]
 gi|315144374|gb|EFT88390.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2141]
 gi|315149512|gb|EFT93528.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0012]
 gi|315153065|gb|EFT97081.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0031]
 gi|315156838|gb|EFU00855.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0043]
 gi|315157624|gb|EFU01641.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0312]
 gi|315162946|gb|EFU06963.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0645]
 gi|315165146|gb|EFU09163.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1302]
 gi|315168045|gb|EFU12062.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1341]
 gi|315171926|gb|EFU15943.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1342]
 gi|315173297|gb|EFU17314.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1346]
 gi|315574267|gb|EFU86458.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309B]
 gi|315577395|gb|EFU89586.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0630]
 gi|315581578|gb|EFU93769.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309A]
 gi|327534575|gb|AEA93409.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis OG1RF]
 gi|329574359|gb|EGG55931.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1467]
          Length = 322

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 11/320 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68
            +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D 
Sbjct: 3   QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62

Query: 69  FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
            A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +R
Sbjct: 63  KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+ 
Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREK 182

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L  
Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  ++
Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302

Query: 301 AFNRRSRSAKLRAGMRTVER 320
           + N RSRSAKLR   +   R
Sbjct: 303 SENNRSRSAKLRIAEKIKSR 322


>gi|295092968|emb|CBK82059.1| S-adenosyl-methyltransferase MraW [Coprococcus sp. ART55/1]
          Length = 311

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 171/305 (56%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S    K    G  +I +D+D  A++   +
Sbjct: 5   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVKRLGEGGRLIGIDQDEDAIAAASK 64

Query: 77  TMRDYKEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ ++ +     F ++ D +  + VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLEPYGDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM       + D+VN  +  +L RIL   GEE+ A  IA+ I K R++   +TT++L+
Sbjct: 125 DMRMDNRQTKTAKDIVNDYSEAELFRILKDYGEERYAKSIAYHICKYRENKVIETTEELN 184

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++   ++N + HP+ ++FQA+RI +N E++ L   +     +L  GG L +++FH
Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +   +    +     + + IT+K ++P + ++  N RS+S+K
Sbjct: 245 SLEDRIVKLAFRKNENPCICPPNFPVCTCGRKPLGKVITRKPIIPGERELEENSRSKSSK 304

Query: 311 LRAGM 315
           LR   
Sbjct: 305 LRVFE 309


>gi|224476281|ref|YP_002633887.1| S-adenosyl-methyltransferase MraW [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|262826678|sp|B9DPQ9|RSMH_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222420888|emb|CAL27702.1| putative MraW methylase family S-adenosyl-methyltransferase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 311

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++           ++IA+D+D  A+  
Sbjct: 1   MFHHVSVMLRETIDELNVKKDGVYVDCTLGGAGHALYLLNQLDENGHLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+ +Q +   + F Q+   + D     VDG+ +DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKEVLKDHLDQVTFVHSNFRQINQILDDLDIDKVDGIYYDLGVSSPQLDVPERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   SA +VVN+   +DL RI    GEEK + +IA  I K R++ P +TT 
Sbjct: 121 ARLDMRMDQTQELSAYEVVNEWPYEDLVRIFYRYGEEKFSKQIARRIEKTRENEPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++    HPA R FQA+RI VN+E++     L  A + +K  G + V+
Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELKAFEDSLEQAIERVKVHGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I    +    + + +K +  ++ED+A N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKLKRVNRKPISASEEDLAENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|167772169|ref|ZP_02444222.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM
           17241]
 gi|167665967|gb|EDS10097.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM
           17241]
          Length = 311

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 8/311 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      HVPVLL+  +  LN  P  + +D T G  G+SR+  +   G  +IALD+DP A
Sbjct: 1   MDELHFSHVPVLLDACLEGLNIRPDGIYVDGTAGGAGHSRAIAERLDGGRLIALDKDPDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           V+     +  +    ++ Q+ FS+L   +     + VDG++ DLGVSS Q+D  +RGFS+
Sbjct: 61  VAVASSRLAPFGCA-TVVQSDFSELCTVLDKLGIEAVDGILLDLGVSSYQLDTPERGFSY 119

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               PLDMRM+ +G+SA DVVN  + KDL R+    GEEK A  IA  I+K R   P  T
Sbjct: 120 AHDAPLDMRMTKTGLSARDVVNTYSFKDLCRVFRDYGEEKFAPAIAKNILKSRTQRPIAT 179

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+++I  ++   ++    +PA R FQA+RI VN E+  L+  L  A + L+ GG + 
Sbjct: 180 TAELAAIIGASIPARARREGGNPAKRVFQAIRIEVNGELSSLSVFLGEAFERLRIGGRMA 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK+ FA+                 +    + + +K +   + ++A N R
Sbjct: 240 IITFHSLEDRMVKQRFAALCRGCTCPPDFPVCICGNQPRGRLLNRKPIEAGERELAANSR 299

Query: 306 SRSAKLRAGMR 316
           S+SAKLR   +
Sbjct: 300 SKSAKLRVIEK 310


>gi|227517912|ref|ZP_03947961.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104]
 gi|227074666|gb|EEI12629.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104]
          Length = 322

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 101/318 (31%), Positives = 165/318 (51%), Gaps = 11/318 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68
            +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D 
Sbjct: 3   QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62

Query: 69  FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
            A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +R
Sbjct: 63  KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+ 
Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYGELVKIFFRYGEEKFSKQIAREIERVREK 182

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L  
Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  ++
Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302

Query: 301 AFNRRSRSAKLRAGMRTV 318
           + N RSRSAKLR   +  
Sbjct: 303 SENNRSRSAKLRIAEKIK 320


>gi|315304096|ref|ZP_07874497.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596]
 gi|313627537|gb|EFR96269.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596]
          Length = 312

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + ++    VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   +  GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLITPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   +          +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPLGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVIEKI 310


>gi|229546836|ref|ZP_04435561.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322]
 gi|307290049|ref|ZP_07569973.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411]
 gi|312901052|ref|ZP_07760343.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470]
 gi|229308001|gb|EEN73988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322]
 gi|306498891|gb|EFM68385.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411]
 gi|311291878|gb|EFQ70434.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470]
 gi|315029678|gb|EFT41610.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4000]
          Length = 322

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/318 (31%), Positives = 165/318 (51%), Gaps = 11/318 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68
            +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D 
Sbjct: 3   QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62

Query: 69  FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
            A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +R
Sbjct: 63  KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+ 
Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREK 182

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L  
Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  ++
Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302

Query: 301 AFNRRSRSAKLRAGMRTV 318
           + N RSRSAKLR   +  
Sbjct: 303 SENNRSRSAKLRIAEKIK 320


>gi|223984258|ref|ZP_03634404.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM
           12042]
 gi|223963789|gb|EEF68155.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM
           12042]
          Length = 312

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 175/312 (56%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL++ I  LN     + +D T G GG+S    +     ++ A D D  A++  
Sbjct: 1   MTRHYSVLLQESIDALNCQSDGIYVDGTLGRGGHSLEIARRLQNGHLYAFDLDEQALAES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + + +   + +L +A F+Q+++ +       VDGVV DLGVSS Q D G+RGFS++   
Sbjct: 61  AQRLAEVSGRVTLIRANFAQMREELNARGVMSVDGVVMDLGVSSPQFDDGERGFSYRYDA 120

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM      SA ++VN+ + K+L+ +L   GEE  +  IA  IV+ R   P  TT +
Sbjct: 121 RLDMRMDQSQPRSAWNLVNELDEKELSALLWKYGEESYSRPIARQIVRARTLHPIDTTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+K +     N + HPA ++FQALRI VN E+E L  GLR+A   +K GG + V++
Sbjct: 181 LVDVIKKALPAKVLNKKGHPAKQTFQALRIAVNGELESLETGLRAAMSLVKPGGRIAVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+ F   S        +   PS      F+ +++K ++P +E++A N RS 
Sbjct: 241 FHSLEDRIVKETFRQASSVEKTDPRIPLLPSQIRQPDFRLVSRKPILPGEEELAENNRSH 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   R  +
Sbjct: 301 SAKLRVLERIGD 312


>gi|84501746|ref|ZP_00999918.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597]
 gi|84390367|gb|EAQ02926.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597]
          Length = 331

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 137/326 (42%), Positives = 195/326 (59%), Gaps = 5/326 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+++       H+PVLL  +I  + P      LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MAASAPSPDAPHIPVLLRPLIDRVAPVA-GTWLDGTFGAGGYARGLLEAGAEKVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+      + D   +  + Q  F++L     +  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLALEMAGGWIGDCAGKLEIRQGNFAELDRIAGEM-LDGVVLDLGVSSMQLDLAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+VN     DL  ++ + GEE+ + RIA AIV+ R  AP  T
Sbjct: 119 MKDGPLDMRMSQEGPSAADLVNTMAEGDLADVIYLYGEERASRRIARAIVRERAEAPIAT 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++  +  +K  + HPATR+FQALRI VN+E   LA+GL +AE+AL+ GG L V
Sbjct: 179 TLRLAGIVEGCLPRAKPGQSHPATRTFQALRIAVNDEYGALAEGLMAAERALRPGGQLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F   RSG+          +      F  +T+K V P ++++  N R+
Sbjct: 239 VTFHSVEDRMVKRFLQLRSGRAGRANRFAPEAPEDKPRFTIVTRKAVGPDEDELEVNPRA 298

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSA+LR   RT E +   D   + +P
Sbjct: 299 RSARLRVARRTEEPAEPIDRKALGMP 324


>gi|293376042|ref|ZP_06622295.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909]
 gi|325844610|ref|ZP_08168253.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1]
 gi|292645343|gb|EFF63400.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909]
 gi|325489035|gb|EGC91422.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1]
          Length = 310

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H  VLL + I  L      + +D T G GG+S    K     ++ + D+D FA+   
Sbjct: 1   MFNHYSVLLRESIENLEIKEDGIYVDCTLGGGGHSSEILKRLTTGHLYSFDQDSFAIENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +++  + F++ ++ F  L++ +       +DG++FDLGVSS Q D  +RGFS+    
Sbjct: 61  TKRLKEIGDNFTIIKSNFVHLKEELNARGVMKIDGIIFDLGVSSPQFDTPERGFSYNHDA 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     +SA ++VN+   K+L  I  +  +EK + +IA AI + R+  P +TT +
Sbjct: 121 KLDMRMDQEAELSAYEIVNEWEYKNLEYIFRVYSDEKFSKQIARAIERYREKQPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQALRI VN+E++   + L+ A   L   G + V++
Sbjct: 181 LVEIIKSAIPAPARRKGGHPAKRTFQALRIAVNDELKVFEKALKDAMDMLNVEGRVAVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K  F  RS      R +          F+ IT+K +V  + ++  N RS S
Sbjct: 241 FHSLEDRICKHMFKERSEAKDLPRGLPVIPQEFQPEFKLITRKPIVADETELTENNRSHS 300

Query: 309 AKLRAGMR 316
           AKLR  M+
Sbjct: 301 AKLRVAMK 308


>gi|223041547|ref|ZP_03611748.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202]
 gi|223017642|gb|EEF16052.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202]
          Length = 314

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MSDTLHKHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS +     D      +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAHTI---TDPRFQIVHTAFSAIPQVCEDLGLIGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ ++Q +V+DL  +L   GEE+ A RIA AIV   +++ 
Sbjct: 118 SFMRDGPLDMRMDTSKGLSAAEWLDQVSVEDLAWVLKEFGEERFAKRIATAIVNFNKTSG 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + T+ L      +     K+   HPATRSFQA+RIF+N+E++EL + L SA   L   G
Sbjct: 178 QKITRTLQLAQIISDAVPFKDKHKHPATRSFQAIRIFINSELDELEKALNSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDV 300
            L ++SFHSLEDR+VK+F    S      R +             ++I  K ++P++ ++
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTI-GKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRVAEK 312


>gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
 gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
          Length = 330

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 149/333 (44%), Positives = 204/333 (61%), Gaps = 6/333 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+       G H+PVLL  ++  + P      LD TFGAGGY+R     G+  VIA+DRD
Sbjct: 1   MTDRPSAPSGPHIPVLLRPLLKAVAPVS-GRWLDGTFGAGGYTRGLLDAGADQVIAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +     Y ++  L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAKPWAGQYGDRLILQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS SG SA+D++ +     +  IL   GEE+ + RIA AIV+ R++ P  T
Sbjct: 118 MKDGPLDMRMSQSGPSAADLIAELTEAQIADILYHYGEERASRRIARAIVREREAEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLRLAGIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK   A R+       PA F+ +T+K V P ++++A N R+
Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPEQEETPAQFELVTRKAVGPDEQELAENPRA 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQ 338
           RSA+LR G RT        +  + +P+L    +
Sbjct: 298 RSARLRVGRRTNAAPGPISAKELGMPQLKETPK 330


>gi|254518688|ref|ZP_05130744.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA]
 gi|226912437|gb|EEH97638.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA]
          Length = 310

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 169/311 (54%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               HV VLL + I  LN     + +D T G GG+S    K  S    +I +D+D  A+ 
Sbjct: 1   MEFKHVSVLLNECIEGLNIKEDGIYVDGTLGGGGHSLEILKRLSKDGTLIGVDQDKDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++D+        + F  +   + +   K +DG++ DLGVSS Q+D GDRGFS+ +
Sbjct: 61  AAGERLQDFAN-VKFVHSNFYNIDSVLNNLEIKKIDGMLMDLGVSSYQLDEGDRGFSYMQ 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+     SA +V+N+   +++ RI+   GEEK A RIA  IV+ R++ P +TT
Sbjct: 120 DAPLDMRMNRESSLSAYEVINEYEEEEIYRIIRDYGEEKFAKRIARFIVENRENKPIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   ++    HPA R+FQA+RI VN+E+  L + +      L  GG + +
Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELSILNKAIEDGVNRLNKGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F   +      +          A  + I++K + P++E+V  N RS
Sbjct: 240 ITFHSLEDRIVKLKFKELATSCTCPKEFPICVCGGKAKVKLISRKAIEPSKEEVEENPRS 299

Query: 307 RSAKLRAGMRT 317
           RSAKLR   R 
Sbjct: 300 RSAKLRVIERI 310


>gi|222528776|ref|YP_002572658.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM
           6725]
 gi|263446717|sp|B9MQ93|RSMH_ANATD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222455623|gb|ACM59885.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM
           6725]
          Length = 307

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS   +L + +  + +DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRKLEAYKN-VKIVHSSFSKVDELLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN  + +DL +I+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LSSLI   V   K+   HPA R+FQA+RI VN E++E+   L  + + L++GG +  +S
Sbjct: 180 ELSSLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  + +             ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|150016452|ref|YP_001308706.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB
           8052]
 gi|263446053|sp|A6LTS0|RSMH_CLOB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149902917|gb|ABR33750.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB
           8052]
          Length = 310

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 164/310 (52%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               HV VLL + I  LN     + +D T G  G+S       S    +I +D+D  A+ 
Sbjct: 1   MEFKHVSVLLNECIEALNIKENGIYVDGTLGGAGHSSHILSNLSKDGMLIGIDQDQDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E ++D++       + F  +   + D   + VDG++ DLGVSS Q+D   RGFS+ K
Sbjct: 61  AAKEKLKDFEN-VKYVHSNFYNIDSILNDLDIEKVDGILMDLGVSSYQLDEASRGFSYMK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  +  SA ++VN  +   L +I+   GEE+ A RIA+ I+ RR   P +TT
Sbjct: 120 DAPLDMRMNRENDFSAYNIVNNYDEDSLYKIIKDYGEERFAKRIANFIINRRIEKPIETT 179

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    +    HPA R+FQA+RI VN+E++ L + +      L  GG + +
Sbjct: 180 FELVDIIKAAIPAKMRREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKGGRMAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F          +           + ++I KK + PT+E++  N RS
Sbjct: 240 ITFHSLEDRIVKLKFRELENPCTCPKEFPMCICGKSPLVKNIAKKGIAPTKEEIEENPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRVIEK 309


>gi|165975468|ref|YP_001651061.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|263446591|sp|B0BRG9|RSMH_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165875569|gb|ABY68617.1| S-adenosyl-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +S  
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSVT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +   I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|154485082|ref|ZP_02027530.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC
           27560]
 gi|149734035|gb|EDM50154.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC
           27560]
          Length = 311

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 173/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL + I  LN  P  + +D T G GG+S   CK       +I +D+D  A+   +
Sbjct: 4   KHVSVLLNETIDGLNINPDGIYVDGTLGGGGHSYEICKRLSDKGRLIGIDQDGEALEAAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++++++ +L ++ + ++   + D   + VDG+V DLGVSS Q+D  +RGFS++   P
Sbjct: 64  ERLKEFEDKITLVRSNYCEIDTILKDLEIEKVDGIVLDLGVSSYQLDNLERGFSYKSDAP 123

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+DVVN  +  +L RI+   GE+K A  IA  IV  R+  P +TT +L
Sbjct: 124 LDMRMDQRQNKTAADVVNNYSENELFRIIRDYGEDKFAKNIAKHIVMARKEKPLETTAEL 183

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           S +I+ ++      +  HPA ++FQA+RI VN E+  L + L +    L  GG + V++F
Sbjct: 184 SEIIKASIPMKFQAKGGHPAKKTFQAIRIEVNQELTVLKESLDTMIDHLNPGGRICVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K  F                     +  + IT+K ++P++E++  N+RS+S+
Sbjct: 244 HSLEDRITKIKFRENENPCTCPPDFPVCVCGKVSKGKVITRKPIIPSEEEMTENKRSKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|298293108|ref|YP_003695047.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506]
 gi|296929619|gb|ADH90428.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506]
          Length = 345

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 142/323 (43%), Positives = 200/323 (61%), Gaps = 6/323 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PVLL +V+  L P  G + +D TFGAGGY+ +     G++VIA+DRDP A+  GQ 
Sbjct: 17  ARHLPVLLAEVVEHLAPKDGGLYIDGTFGAGGYTSAILNAAGTSVIAIDRDPTAIEGGQG 76

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + +L    FS L +         VDGVV D+GVSSMQID G+RGFSF++ GPL
Sbjct: 77  LVAASGGRLTLVHERFSALDEVAAAQGIDAVDGVVLDIGVSSMQIDEGERGFSFRRDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D+V + +  DL  ++   GEE+ +  +A AIV  R+ AP + T  L+ 
Sbjct: 137 DMRMSSEGPSAADLVAKLSETDLANLIFRFGEERHSRAVARAIVAARKEAPIERTLQLAD 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K V+  K +  HPATR+FQALRI VN+E+ ELA+ L +AE+ LK GG L+VV+FHSL
Sbjct: 197 IVAKVVWA-KPHEPHPATRTFQALRIAVNDELGELARALSAAERVLKPGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK F A+R+      RHM    + P  F+ + +  V P +E++A N R+RS++LRA
Sbjct: 256 EDRIVKTFLANRAKAAAGSRHMPALQSAPPSFKLVARGAVEPGEEELARNPRARSSRLRA 315

Query: 314 GMRTVERSIEDDSFVH-LPRLPT 335
             RT   +         LP +P 
Sbjct: 316 AERTEAPAHPAGDLSSLLPPVPD 338


>gi|298369646|ref|ZP_06980963.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282203|gb|EFI23691.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 323

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 120/316 (37%), Positives = 173/316 (54%), Gaps = 10/316 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P  V +D TFG GG+SR           +I  D+DP A+   +
Sbjct: 8   KHITVLLNEAVDALNIRPDGVYVDGTFGRGGHSRLILSRLGEEGRLIVFDKDPQAIVAAR 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y  + S+    FS  Q  + +     VDG +FDLGVSS QID G RGFSF+   P
Sbjct: 68  K-LAAYDMRVSVVHDGFSVFQTALDELGIGKVDGALFDLGVSSPQIDEGGRGFSFRFDAP 126

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT+ L
Sbjct: 127 LDMRMDPTRGMSAAEWIATASEQDLNEVIKNYGEERFSRQIARAIVAQREESPIDTTRKL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V  ++     PATR+FQA+RIF+N E+EE+   L  A   LK GG L V++FH
Sbjct: 187 AQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEIEAVLPQATGRLKEGGRLAVIAFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F   +S      R + +     P        K V P+  ++  N RSRSA 
Sbjct: 246 SLEDRIVKQFIKKQSQHAPLPRWVAVKEADLPQPPLRPVGKAVRPSDAEIQANPRSRSAV 305

Query: 311 LRAGMRTVERSIEDDS 326
           LR   RT      +  
Sbjct: 306 LRVAERTAGSFNAEGK 321


>gi|262831538|sp|Q1QNV1|RSMH_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 149/332 (44%), Positives = 200/332 (60%), Gaps = 7/332 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +  +   HVPVL  + +A+L P  G V +DATFGAGGYSR+      + VI +DRD  A+
Sbjct: 1   MTASPVRHVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G   + +   + +L +  FS L           VDG+V D+GVSSMQ+D  DRGFSF+
Sbjct: 61  AGGFALVEESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRMS  G +A+DVV +A+  DL  I+ I GEE+++  +A AIV  R+ AP  TT
Sbjct: 121 LDGPLDMRMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V   K + IHPATR+FQALRIFVN E++EL   L +AE+ L+ GG L VV
Sbjct: 181 RALADIVSKVVRA-KPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK FFA R       RH          F  +T++ V   QE+V+ N R+RS
Sbjct: 240 SFHSLEDRIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLRA  RT   +  DD     P  P+L+   
Sbjct: 300 AKLRAAERTAAPATADDG--ESPGWPSLANVM 329


>gi|104773820|ref|YP_618800.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122983974|sp|Q1GAU0|RSMH_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460423|sp|Q04B77|RSMH_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|103422901|emb|CAI97563.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125484|gb|ADY84814.1| S-adenosyl-methyltransferase mraW [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 314

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL + I  L P  G   +DATFG GG++R   +     N+I  D+D +A+  
Sbjct: 1   MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDT 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            Q         D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGF
Sbjct: 61  AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGF 120

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++    LDMRM       A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P
Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKP 180

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I++ +  + +    HPA +SFQA+R+ VN+E++ L   L  A   L  GG
Sbjct: 181 IETTFELVEIIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++F SLED++VK+ F   S   +     +         + + +K +  ++E++A N
Sbjct: 241 RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAEN 300

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 301 NRSHSAKLRVAEK 313


>gi|303250489|ref|ZP_07336686.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303251832|ref|ZP_07338003.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249133|ref|ZP_07531140.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249209|ref|ZP_07531206.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251531|ref|ZP_07533438.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260461|ref|ZP_07542156.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302649262|gb|EFL79447.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650477|gb|EFL80636.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854421|gb|EFM86617.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858733|gb|EFM90792.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860995|gb|EFM93001.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869864|gb|EFN01646.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +   I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|300854240|ref|YP_003779224.1| putative S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM
           13528]
 gi|300434355|gb|ADK14122.1| predicted S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM
           13528]
          Length = 309

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HVPVLL + I  LN     + +D T G GG+S    K       +I +D D  A++
Sbjct: 1   MKFKHVPVLLNETINSLNIKEDGIYVDCTLGGGGHSFEILKRLSDKGRLIGIDEDTSAIN 60

Query: 73  CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E + ++K    +    +   ++ + +    VDG++ DLGVSS Q+D  +RGFS+ K 
Sbjct: 61  ATRERLNEFKNITYVHNNFYYIDEILEELKIDKVDGILMDLGVSSYQLDESERGFSYMKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+     SA +V+N  + ++L  ++   GEE  + RIA  IV  R+ AP QTT 
Sbjct: 121 APLDMRMNRDSSLSAYEVINNYSEENLYNVIRDYGEENFSKRIAKFIVAEREKAPIQTTL 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +I+  +        HPA R+FQA+RI VN E++ L + +  + K L  GG + +++
Sbjct: 181 QLVDIIRNAIPARFQKEGHPAKRTFQAIRIEVNGELKILNKAVEDSVKRLNTGGRISIIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR++K  F                      + + I KK ++PT+E+   N RS+S
Sbjct: 241 FHSLEDRIIKTKFKKLENPCTCPPDFPLCVCGKKPIVKIINKKPIIPTKEEKEKNSRSKS 300

Query: 309 AKLRAGMRT 317
           +KLR   + 
Sbjct: 301 SKLRTAEKI 309


>gi|260589610|ref|ZP_05855523.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|331083033|ref|ZP_08332152.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260539850|gb|EEX20419.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|330399770|gb|EGG79431.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 168/312 (53%), Gaps = 9/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  VLLE+ +  L   P  + +D T G GG+S +         ++I +D+D  A++
Sbjct: 1   MEFKHQSVLLEETVGNLRVKPDGIYVDGTLGGGGHSYAICQQLSAKGSLIGIDQDEAAIN 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                ++++KEQ ++ ++ +  ++  +       VDG+V DLGVSS Q+D  +RGF++++
Sbjct: 61  AAGNRLQEFKEQVTIIRSNYCNMKRELQKIGITSVDGIVLDLGVSSYQLDNSERGFTYRE 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A ++VN+ +  +L RI+   GE+K A  IA  I   RQ    +TT
Sbjct: 121 DVPLDMRMDQRNPRTAKNIVNEYSENELYRIIRDYGEDKFAKNIAKHICMARQEKEIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +    +    HPA ++FQA+RI +N E++ L   L    + L   G + +
Sbjct: 181 GELIEIIKRAIPMKMRAVGGHPAKKTFQAIRIELNQELDVLRNSLDDMIELLNDQGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                   + +  + IT+K ++P++E++  N+RS
Sbjct: 241 ITFHSLEDRIVKTIFKRNENPCTCPPGFPVCVCGNQSKGKVITRKPILPSEEELEMNKRS 300

Query: 307 RSAKLRAGMRTV 318
           +SAKLR   R  
Sbjct: 301 KSAKLRVFERVK 312


>gi|53729126|ref|ZP_00134091.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207498|ref|YP_001052723.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           L20]
 gi|263440608|sp|A3MY82|RSMH_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126096290|gb|ABN73118.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 172/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + +          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---NDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +V DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +   I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|302380517|ref|ZP_07268982.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3]
 gi|303234081|ref|ZP_07320730.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4]
 gi|302311460|gb|EFK93476.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3]
 gi|302495006|gb|EFL54763.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4]
          Length = 312

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 165/311 (53%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               HVP+LL + I  LN   GK+ +D T G  G+SR   K      +I  D+D  A+  
Sbjct: 1   MEFKHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ + ++ ++    +  F  +++ + +   + VDG++ D+GVSS QID   RGFS+   
Sbjct: 61  AKQRLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   SA D+VN  + +DL  ++    +EK A RIA  I   R++ P  TT 
Sbjct: 121 ADLDMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTF 180

Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L  +I+K +      N + H A ++FQA+RI VN E++ L Q +  +   L   G + +
Sbjct: 181 ELVEVIEKAIPKKVRVNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLED++ K  F  R    +    +      H    + IT+K + P+++++  N R+
Sbjct: 241 ITFHSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKDELMQNSRA 300

Query: 307 RSAKLRAGMRT 317
           RSAKLR   + 
Sbjct: 301 RSAKLRVAEKI 311


>gi|310828121|ref|YP_003960478.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612]
 gi|308739855|gb|ADO37515.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612]
          Length = 311

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 169/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P    +D T G GG+S   CK       +I +D+D FA+     
Sbjct: 5   HTTVLLHETVDGLMIRPDGTYVDGTLGGGGHSELICKRLSADGTLIGIDQDDFALDYAGR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  L +  F  L++ + +     +DG+++DLGVSS Q D   RGFS+   GPL
Sbjct: 65  RLAPYACRKQLVKNNFVHLKEVLGEAGVSQIDGIIYDLGVSSFQFDDETRGFSYHHDGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + +SA +VVN    + L ++L + GEE+ A RI +AI+K R++ P +TT +LS
Sbjct: 125 DMRMDSGAELSAYEVVNAYPPERLKKVLQVYGEERFAGRIVNAIIKERETKPIETTLELS 184

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+      +  +  HPA +SFQA+R+ VN+E++ L     +  +ALK GG + +++FH
Sbjct: 185 ELIKAAYPAKERFKEKHPARKSFQAIRLEVNHELDILEDAFSAGIEALKPGGRMCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK FF  +                     + IT+K V+P  E++  NRRSRSAK
Sbjct: 245 SLEDRIVKHFFKDKQNPCTCPPEFPACVCGKKPEVRIITRKPVLPAPEEIEANRRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|307244811|ref|ZP_07526910.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253765|ref|ZP_07535619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258222|ref|ZP_07539965.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306854256|gb|EFM86462.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306863249|gb|EFM95189.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867682|gb|EFM99527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIEHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 NKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +   I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|224541552|ref|ZP_03682091.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525519|gb|EEF94624.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM
           15897]
          Length = 315

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
            + +H  VLL++ I  LN     + +D T G GG+S    +     ++   D+D  A+  
Sbjct: 3   NMFEHYSVLLDETIDALNIKEDGIYVDCTLGGGGHSSRILEKLTTGHLYCFDQDAHAIEA 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E M    + F++  A F +++  +       VDG+VFDLGVSS Q D  +RGFS+   
Sbjct: 63  ARERMSQISDNFTIIHANFKEIKARLSMEGVYKVDGIVFDLGVSSPQFDNAERGFSYNTD 122

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+     SA +VVN  + +DL  IL    +EK A  IA  I K RQ  P +TT 
Sbjct: 123 ARLDMRMNQEQPLSAYEVVNNYSYQDLVTILYKYADEKFAKSIARMIEKERQVKPIETTF 182

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +++K +   ++    HPA R+FQA+RI VN+E+    + L  +   L  GG + V+
Sbjct: 183 ELVEIVKKAIPARARRTGGHPAKRTFQAIRIEVNDELNVFERALTDSLDLLNVGGRVAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLED++ K  F  ++        M      +   F+ +T+K +V  +++++ NRRS 
Sbjct: 243 SFHSLEDKITKYMFNEKTAVPDLPMGMPVIPEEYQPHFKKVTRKPIVADEKELSENRRSH 302

Query: 308 SAKLRAGMRTVER 320
           SAKLR   R  + 
Sbjct: 303 SAKLRVIERIRDE 315


>gi|322384129|ref|ZP_08057847.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151209|gb|EFX44518.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL E+ +  L+  P  + +D T G  G+S            ++ALD+D  A++ 
Sbjct: 1   MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124
            Q  + +Y+++  + +  F +L+                VDG++FDLGVSS Q+D  +RG
Sbjct: 61  AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+     LDMRM  S   +A  +VN+   +++ RIL + GEEK + +IA +IVK R++ 
Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             +TT +L  +I++ +  + + +  HPA RSFQALRI VN+E+      L  A + L  G
Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K+ FA   GK             + ++ + + +K +  +++++A
Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKSILKLVNRKPITASEKELA 300

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RSAKLR   +
Sbjct: 301 YNPRARSAKLRIAEK 315


>gi|240850900|ref|YP_002972300.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup]
 gi|263445977|sp|C6AEK6|RSMH_BARGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240268023|gb|ACS51611.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup]
          Length = 332

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 162/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+ +  K G+ VIALDRDP A+S GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTCALLKAGAEVIALDRDPHAISAGQSLVE 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLVQMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A DVVN    +DL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 130 TGFTAGDVVNHLKARDLARIFKILGEERYAGRIARMIEKRRVVQPFLRTGDLAYAIEALI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERILKPGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF+ RSG+ M  R++      PA F  + K  +  ++E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFSFRSGECMRSRYLPEIKTAPATFFPLFKGGITASEEELQQNPRSRSARLRIGVRTEA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            ++  D  + L  L  ++ F G
Sbjct: 310 EALAAD--MKLFGLAEIASFEG 329


>gi|312134653|ref|YP_004001991.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis
           OL]
 gi|311774704|gb|ADQ04191.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis
           OL]
          Length = 307

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ +  L   P  + +DATFG GG+S+   +  S+   +IA+DRD  A+  
Sbjct: 1   MYEHIPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSDKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  ++ +K    +  ++FS++ + +     + +DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRKLKVHKN-VKIVHSSFSKVDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN  + KDL +I+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQKDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LS+LI   V   K+   HPA R+FQA+RI VN E++E+   L  + + L++GG +  +S
Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  + +             ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|315194065|gb|EFU24458.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 311

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNIKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
 gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
          Length = 322

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 146/311 (46%), Positives = 196/311 (63%), Gaps = 3/311 (0%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
           +     HV VLL +V+A L   PG +++D TFGAGGY+R+    G++V A DRDP     
Sbjct: 9   NPEGASHVSVLLGEVVAALASGPGDMVIDGTFGAGGYTRAILATGASVTAFDRDPSVQRF 68

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E       +F L Q  FSQ+ +Y+ D  VDGV  DLGVSSMQ+D  +RGFSF + GPL
Sbjct: 69  AAEFSA-TDGRFRLIQDRFSQITEYLEDASVDGVTLDLGVSSMQLDEAERGFSFMRDGPL 127

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G +A+D+VN  +  +L RIL + GEE  + RIA  I+KRR+  PF  T DL+ 
Sbjct: 128 DMRMGADGPTAADLVNDLDHTELARILYVYGEEHASRRIASFIIKRREERPFTRTLDLAH 187

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I++ +   K  ++HPATRSFQ LRI VN E++EL  GL +AE+ LK GG L VV+FHSL
Sbjct: 188 VIERALGGRKGAKVHPATRSFQGLRIAVNAELDELEAGLLAAERVLKPGGRLAVVTFHSL 247

Query: 254 EDRLVKKFFASRSGKVM-AVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK F A R+G+     RH+ P     P  FQ I+ K + P + ++A N R+RS+KL
Sbjct: 248 EDRIVKNFLAERAGRTPGGSRHLPPVEAGAPPSFQLISSKAIAPGEAELAVNPRARSSKL 307

Query: 312 RAGMRTVERSI 322
           RA +RT     
Sbjct: 308 RAAVRTTAPVW 318


>gi|315147940|gb|EFT91956.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4244]
          Length = 322

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 11/320 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68
            +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D 
Sbjct: 3   QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62

Query: 69  FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
            A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +R
Sbjct: 63  KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +I   I + R+ 
Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQITREIERVREK 182

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L  
Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  ++
Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302

Query: 301 AFNRRSRSAKLRAGMRTVER 320
           + N RSRSAKLR   +   R
Sbjct: 303 SENNRSRSAKLRIAEKIKSR 322


>gi|317129306|ref|YP_004095588.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM
           2522]
 gi|315474254|gb|ADU30857.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM
           2522]
          Length = 310

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VL E+ +  LN     V +D T G GG+S            +I+ D+D  A+S 
Sbjct: 1   MFEHETVLKEETVKGLNIHEDGVYVDCTLGGGGHSERIASMLGANGKLISFDQDEVALSH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  ++++     + F  L+    ++    VDG VFDLGVSS Q D  +RGFS++  
Sbjct: 61  AKERLAPFRDKIIFVHSNFQYLKQELTHLGYSSVDGFVFDLGVSSPQFDEPERGFSYRFD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A +VVN    +D+ +++   GEE+ A  IA  I K R+ +P +TT 
Sbjct: 121 APLDMRMDRGQSLTAYEVVNNWPFEDIMKVISRYGEERFAKHIARKIEKAREVSPIKTTF 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQA+RI VN+E+    Q L  A       G + V+
Sbjct: 181 ELVDIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFEQALYDAIDMTTEKGRIAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F ++S      R +     +H      + KK ++ ++E++  N R++
Sbjct: 241 TFHSLEDRICKHVFKNKSTPKDLPRGLPVIPESHKPELMLVNKKPILASEEELENNSRAQ 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP
           105476]
 gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 332

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 168/322 (52%), Positives = 215/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+  K G+ VIALDRDP A++ GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTRALLKAGAQVIALDRDPHAIAAGQSLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L    FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLVHMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G SASDVVN    KDL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 130 TGFSASDVVNHLKAKDLARIFKILGEERYAGRIARMIEKRRAVQPFLRTGDLAYAIEALV 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERVLKAGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF SRSG+ M  RH+      PA F  + K  +   +E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFVSRSGEGMRSRHLPEIKHSPATFFPLFKGGITANKEELQQNPRSRSARLRMGVRTNA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            ++ +D  + L  L  ++ F G
Sbjct: 310 EALAED--MKLFGLAEIASFEG 329


>gi|313905185|ref|ZP_07838553.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
 gi|313469938|gb|EFR65272.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
          Length = 326

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLL + I  L   P  + +D T G GG+S   CK    G  +I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLTETIDHLAIKPEGIYVDGTLGGGGHSYEICKRLSGGGRLIGIDQDEDAIR 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q  +  YK++ ++ +  +  +   + +     VDG++ DLGVSS Q+D  +RGF++++
Sbjct: 61  AAQARLAKYKDRVTILRGNYRNMVQMLAEIGVTSVDGILLDLGVSSYQLDTAERGFTYRE 120

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM      SA DVVN    + L +++   GEEK A  IA  I   RQ  P +TT
Sbjct: 121 DTRLDMRMDRRQPFSAFDVVNSYTKEKLYQVIRDYGEEKFAENIAKHICLERQKKPVETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I+  +    + N  HPA R+FQA+RI VN E++ L   L      L  GG L V
Sbjct: 181 GELAEIIKGAIPAKLRANGGHPAKRTFQAIRIEVNAELDVLKDSLDGMIDILNDGGRLCV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F       +             +   ++T+K +VPT E++ FN RS
Sbjct: 241 ITFHSLEDRIVKNNFRRNENPCICPPQFPVCVCGKKSKGSTVTRKPIVPTAEEMEFNPRS 300

Query: 307 RSAKLRAGMR 316
           +S+KLR   R
Sbjct: 301 KSSKLRVFER 310


>gi|332704509|ref|ZP_08424597.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554658|gb|EGJ51702.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 328

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 13/325 (4%)

Query: 8   TMSSAIHHTIGDH--VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVI 62
            M    H   G+H  + VLL + +  L P PG   LD T G GG+S +  +    G+ ++
Sbjct: 1   MMRELAHKEQGEHGHISVLLAETLEFLAPRPGGRYLDGTLGLGGHSEAILELAGQGAELL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            LDRD  A+   +  +  + +   L QA +S  +  + +     +DG V DLG+SS+Q+D
Sbjct: 61  GLDRDAQALERARTRLARFGQAAHLVQAPYSSFEAEMENLGWDLLDGAVLDLGISSLQVD 120

Query: 120 CGDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
             +RGFSF   GPLDMRM        AS +VN+A+ + L  I+  LGEE  A RIA AIV
Sbjct: 121 LAERGFSFMAEGPLDMRMDPDSGAAPASQIVNKASCERLKEIIRDLGEEPMAGRIARAIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           + RQ    +TT +L++++ +     + +  R HPATR+FQALR+ VN+E+EEL   L   
Sbjct: 181 EARQDKEIETTLELAAIVARAYPAKWRRTARNHPATRTFQALRMAVNSELEELESFLSRI 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVV 294
              L+ GG ++V+SFHSLEDRLVK  F   + K    R             + +TKK + 
Sbjct: 241 TDRLRPGGRVVVISFHSLEDRLVKWAFREDARKCRCPRTQPFCDCGGQPRLKLLTKKPLA 300

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
           P+++++A N RSRSAKLRA  R  E
Sbjct: 301 PSEQEMAANPRSRSAKLRAAERVGE 325


>gi|260437306|ref|ZP_05791122.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
 gi|292810218|gb|EFF69423.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
          Length = 313

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 154/308 (50%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G  G+S            +I +D+D  A+     
Sbjct: 5   HKSVLLNECIENLNIKPDGIYVDGTLGGAGHSYHICERLSKKGRLIGIDQDEDAIRAATT 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +K++ ++ +  +S +++ +       VDG++ D+GVSS Q+D  +RGF++++    
Sbjct: 65  RLEPFKDRVTIVKDNYSNIKNVLVSLGIDKVDGILLDIGVSSYQLDNAERGFTYKEEDAP 124

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                   SGI+A DVVN  +  +L R++   GEE+ A  IA  I   R  +   TT  L
Sbjct: 125 LDMRMDRQSGITAQDVVNDYSEMELFRVIRDYGEEQFAKNIAKHICIERNKSRITTTGRL 184

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +      N  HPA ++FQA+RI VN E+  L + + +    L   G L +++F
Sbjct: 185 TEIIKAAIPMKFRVNGGHPAKKTFQAIRIEVNRELYVLEESIDTMIDLLNDKGRLCIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F                   +      IT+K +VPT E++  N+R++S+
Sbjct: 245 HSLEDRIVKNKFRDNVNTCTCPPDFPVCVCGNRPKGVIITRKPIVPTDEEIEINKRAKSS 304

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 305 KLRVFERV 312


>gi|240948415|ref|ZP_04752793.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305]
 gi|240297241|gb|EER47799.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305]
          Length = 314

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MSDTLHKHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS +     D      +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAHTI---TDPRFQIIHTAFSAIPQVCEDLDLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ ++Q +++DLT +L   GEE+ A RIA AIV   +++ 
Sbjct: 118 SFMRDGPLDMRMDTSKGLSAAEWLDQVSIEDLTWVLKEFGEERFAKRIATAIVNFNKTSS 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + T+ L      +     K+   HPATRSFQA+RIF+N+E++EL + L SA   L   G
Sbjct: 178 QKITRTLQLAQIISDAVPFKDKHKHPATRSFQAIRIFINSELDELEKALNSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDV 300
            L ++SFHSLEDR+VK+F    S      R +             ++I  K ++P++ ++
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTI-GKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRVAEK 312


>gi|307256031|ref|ZP_07537819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865453|gb|EFM97348.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 313

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +   I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPIFESELNKNIPLKIIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|255971443|ref|ZP_05422029.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T1]
 gi|255974058|ref|ZP_05424644.1| mraW [Enterococcus faecalis T2]
 gi|256617913|ref|ZP_05474759.1| mraW [Enterococcus faecalis ATCC 4200]
 gi|256761747|ref|ZP_05502327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T3]
 gi|256957082|ref|ZP_05561253.1| mraW [Enterococcus faecalis DS5]
 gi|256960173|ref|ZP_05564344.1| mraW [Enterococcus faecalis Merz96]
 gi|256962585|ref|ZP_05566756.1| mraW [Enterococcus faecalis HIP11704]
 gi|257077878|ref|ZP_05572239.1| mraW [Enterococcus faecalis JH1]
 gi|257081242|ref|ZP_05575603.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol]
 gi|257083900|ref|ZP_05578261.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1]
 gi|257086348|ref|ZP_05580709.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis D6]
 gi|257089398|ref|ZP_05583759.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188]
 gi|257415608|ref|ZP_05592602.1| mraW [Enterococcus faecalis AR01/DG]
 gi|257418579|ref|ZP_05595573.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11]
 gi|257421238|ref|ZP_05598228.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98]
 gi|294780578|ref|ZP_06745941.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1]
 gi|300859663|ref|ZP_07105751.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD
           Ef11]
 gi|30179792|sp|O07104|RSMH_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|255962461|gb|EET94937.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T1]
 gi|255966930|gb|EET97552.1| mraW [Enterococcus faecalis T2]
 gi|256597440|gb|EEU16616.1| mraW [Enterococcus faecalis ATCC 4200]
 gi|256682998|gb|EEU22693.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T3]
 gi|256947578|gb|EEU64210.1| mraW [Enterococcus faecalis DS5]
 gi|256950669|gb|EEU67301.1| mraW [Enterococcus faecalis Merz96]
 gi|256953081|gb|EEU69713.1| mraW [Enterococcus faecalis HIP11704]
 gi|256985908|gb|EEU73210.1| mraW [Enterococcus faecalis JH1]
 gi|256989272|gb|EEU76574.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol]
 gi|256991930|gb|EEU79232.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1]
 gi|256994378|gb|EEU81680.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis D6]
 gi|256998210|gb|EEU84730.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188]
 gi|257157436|gb|EEU87396.1| mraW [Enterococcus faecalis ARO1/DG]
 gi|257160407|gb|EEU90367.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11]
 gi|257163062|gb|EEU93022.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98]
 gi|294452405|gb|EFG20844.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1]
 gi|300850481|gb|EFK78230.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD
           Ef11]
 gi|323480228|gb|ADX79667.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis 62]
          Length = 318

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/316 (32%), Positives = 165/316 (52%), Gaps = 11/316 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVS 72
               H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++
Sbjct: 3   EEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALA 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
             +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 63  HAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSY 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +
Sbjct: 123 HQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIE 182

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L   G +
Sbjct: 183 TTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRI 242

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK  F   S        +           + IT+K ++P+  +++ N 
Sbjct: 243 SVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 302

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 303 RSRSAKLRIAEKIKSR 318


>gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 316

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 183/306 (59%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P PG V +DAT G GG++    +    G  VIA D+D  A++  + 
Sbjct: 5   HETVLLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEP 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R Y  + +L +A F+++++ +       VDGV+FDLGVSS Q D  +RGFS+   GPL
Sbjct: 65  LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A ++VN+ + ++L RI+   GEE+ A+ IA AI + R   P +TT +L+
Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAIARARSKKPIETTTELA 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +  + + +  HPA R+FQA+RI VN+E+  L +G+ +A +AL+ GG L V++FH
Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + +   +              + + +++K V P+ E++  N R+RSAK
Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 305 LRAFEK 310


>gi|94501904|ref|ZP_01308414.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65]
 gi|94425957|gb|EAT10955.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65]
          Length = 308

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ VLL + +  LN  P  + +D TFG GG+++           VI +D+DP A++ 
Sbjct: 1   MSKHITVLLHEAVEALNQDPDGLYVDCTFGRGGHTKLLLDQLSEQGRVIGIDKDPRAIAT 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           GQE M    ++F +   +F+QL+++V        + GV+ DLGVSS Q+D  +RGFSF +
Sbjct: 61  GQELMAQ-DQRFQICHGSFAQLREFVEAHGQGKELSGVLMDLGVSSPQLDEAERGFSFMQ 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   GI+A + +  A+ +++  +    GEE+ + R+A AIV+RR   PF  T
Sbjct: 120 DGPLDMRMNTEAGITAQEWIATASEEEIANVFYEFGEERASRRLARAIVERRAIEPFTRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ +I+      + N+ HPATRSFQ LRIF+NNE+ +L   L    + L  GG L+V+
Sbjct: 180 LDLAEVIKHAHPRWEKNK-HPATRSFQGLRIFLNNELGDLESVLDETVEMLAKGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F   +         +               K +  ++E+V  N RSRS
Sbjct: 239 SFHSLEDRIVKRFIRDKEKGPQLPPDLPIMEQDAPRPLKHIGKAIKASKEEVEQNVRSRS 298

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 299 AIMRVAEK 306


>gi|259047019|ref|ZP_05737420.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Granulicatella adiacens ATCC 49175]
 gi|259036338|gb|EEW37593.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Granulicatella adiacens ATCC 49175]
          Length = 314

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/313 (32%), Positives = 171/313 (54%), Gaps = 11/313 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H+ VLL + +  L+  P  + +D T G  G+S+         ++   D+D  A+   
Sbjct: 1   MFKHITVLLHETVDALSIKPDGIYVDCTLGGAGHSQYLLSQLTTGHLYCFDQDMQAIQHA 60

Query: 75  QETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  +     + + +   A F QL+  +       VDG+++DLGVSS Q+D  +RGFS+ +
Sbjct: 61  KARLAKEVSEGKVTFIHANFRQLKIELGKLGVSKVDGILYDLGVSSPQLDQIERGFSYHQ 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S  ++A ++VN+ +  +L RI    GEEK + +IA  I + R     +TT
Sbjct: 121 NAKLDMRMDQSAPLTAEEIVNEWSYDELVRIFYRYGEEKFSKQIARNIERIRAQHRIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+ ++   ++    HPA R FQA+RI VN+E+  +   L  A + +  GG + V
Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAIRIAVNDELAAIEDSLEQAFEVVSVGGRISV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK  F  +S    A +++   P+    A FQ + KK ++P+ E++  N R
Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEKAPKNLPILPTEEEKAPFQLVNKKPILPSLEEITENSR 300

Query: 306 SRSAKLRAGMRTV 318
           S+SAKLR   +  
Sbjct: 301 SQSAKLRVIEKIK 313


>gi|167461086|ref|ZP_02326175.1| hypothetical protein Plarl_00698 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 317

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL E+ +  L+  P  + +D T G  G+S            ++ALD+D  A++ 
Sbjct: 1   MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124
            Q  + +Y+++  + +  F +L+                VDG++FDLGVSS Q+D  +RG
Sbjct: 61  AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+     LDMRM  S   +A  +VN+   +++ RIL + GEEK + +IA +IVK R++ 
Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             +TT +L  +I++ +  + + +  HPA RSFQALRI VN+E+      L  A + L  G
Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K+ FA   GK             +  + + + +K +  +++++A
Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKGILKLVNRKPITASEKELA 300

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RSAKLR   +
Sbjct: 301 YNPRARSAKLRIAEK 315


>gi|315026965|gb|EFT38897.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2137]
          Length = 322

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 11/320 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68
            +      H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D 
Sbjct: 3   QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62

Query: 69  FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
            A++  +  ++ Y  K Q +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +R
Sbjct: 63  KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM     ++A +V N  +  +L +I    GEEK + +IA  I + R+ 
Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVGNTYSYSELVKIFFRYGEEKFSKQIAREIERVREK 182

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT +L  +I+  +    +    HPA R FQA+RI VN+E+  + + L  A   L  
Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+VK  F   S        +           + IT+K ++P+  ++
Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302

Query: 301 AFNRRSRSAKLRAGMRTVER 320
           + N RSRSAKLR   +   R
Sbjct: 303 SENNRSRSAKLRIAEKIKSR 322


>gi|258438778|ref|ZP_05689931.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299]
 gi|257848037|gb|EEV72030.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299]
          Length = 311

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I    +  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHCEQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|27467772|ref|NP_764409.1| hypothetical protein SE0854 [Staphylococcus epidermidis ATCC 12228]
 gi|30173015|sp|Q8CSX7|RSMH_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27315316|gb|AAO04451.1|AE016746_241 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|329730036|gb|EGG66427.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU144]
 gi|329736180|gb|EGG72452.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU028]
          Length = 311

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T +D+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|190149279|ref|YP_001967804.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262590|ref|ZP_07544221.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|263446582|sp|B3GZK0|RSMH_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189914410|gb|ACE60662.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872088|gb|EFN03801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 313

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPSGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +   I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|261867472|ref|YP_003255394.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412804|gb|ACX82175.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 322

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 172/325 (52%), Gaps = 18/325 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP AV+  Q+       +F +   TFS++            VDG++ DLGVSS Q+D  
Sbjct: 61  RDPQAVAEAQKI---QDSRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    GISA++ + Q + +DL  +L   GEE+ A RIA  IV   
Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA     + L+  +Q           K+   HPATRSFQA+RI++N E++EL   L+SA
Sbjct: 178 KSAVQNGGEFLARTLQLAELITQAVPFKDKYKHPATRSFQAIRIYINAELDELENVLQSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
              L   G L V+SFHSLEDR+VK+F   +S   +  + +          +   +  K +
Sbjct: 238 LSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
           +P++ ++  N R+RSA LR   R  
Sbjct: 298 MPSEAEIVQNPRARSAVLRIAERIN 322


>gi|254486962|ref|ZP_05100167.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101]
 gi|214043831|gb|EEB84469.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101]
          Length = 330

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 144/326 (44%), Positives = 199/326 (61%), Gaps = 6/326 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M++A       H PVLL  ++A + P      LD TFGAGGY+R     G+  VIA+DRD
Sbjct: 1   MTAASDTPSAPHTPVLLRPLLAAVAPVY-GRWLDGTFGAGGYTRGLLDAGADQVIAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A         +Y ++  + Q  FS++ +Y  +  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAASWAGEYGDRLIMQQGVFSRMDEYAQN--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV++R+ AP  T
Sbjct: 118 MRDGPLDMRMSQEGPSAADIVNEAEEEIIANILFQFGEERASRRIAKAIVRQREEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ L++  +  SK  + HPATRSFQALRI VNNE  EL +GL +AE+ALK GG L V
Sbjct: 178 TLELARLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFEGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G             + P  F    +K + P  +++  N RS
Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEMESEPPQFIVKKRKAIGPDAQELEENPRS 297

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSAKLR  +RT   +   D   + +P
Sbjct: 298 RSAKLRVAIRTDAPAGAVDAKSIGMP 323


>gi|302671225|ref|YP_003831185.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus
           B316]
 gi|302395698|gb|ADL34603.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus
           B316]
          Length = 313

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 161/313 (51%), Gaps = 9/313 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  VLL + +  LN  P  + LD T G  G+S         G ++   D+D  A++
Sbjct: 1   MEFKHYSVLLHECLDNLNIKPDGIYLDGTLGGAGHSFHIAERLDKGGHLYGTDQDEDAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + +  + ++ ++ +  +      + +    GVDG++ DLGVSS Q+D  +RGF++++
Sbjct: 61  AATKRLEPFSDRVTIIRDNYENAVTRLKNLGVTGVDGILLDLGVSSYQLDNAERGFTYKE 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A D+VN  +  ++  I+   GE+K A  IA  I   R  AP +TT
Sbjct: 121 DVPLDMRMDQRQTLTARDIVNDYSETEIFHIIRDYGEDKFAKNIAKHICIERAKAPIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I+  +    +    HP+ R++QA+RI +N E++ L   L      L  GG L V
Sbjct: 181 FQLNDIIKAAIPAKMREKGGHPSKRTYQAIRIALNRELDVLQNSLDGFIDFLNPGGRLCV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F +         +         +  + +T+K ++P+ +++A N+RS
Sbjct: 241 ITFHSLEDRITKNNFRTNENPCTCPPNFPVCVCGKKSKGRVVTRKPILPSDQELAENKRS 300

Query: 307 RSAKLRAGMRTVE 319
           +SAKLR   +  E
Sbjct: 301 QSAKLRVFEKVSE 313


>gi|291544487|emb|CBL17596.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. 18P13]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 124/305 (40%), Positives = 169/305 (55%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VL E+ I  L   P  + +D T G  G++    K+   G  +IALDRDP AV    +
Sbjct: 5   HISVLPEETIEGLGVKPDGIYVDGTVGGAGHALRIAKLLTDGGKLIALDRDPDAVKTADK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y       Q+ FSQ++  +       VDGV+ DLGVSS Q+D G RGFS+    PL
Sbjct: 65  RLAQYPAVVV--QSNFSQIRQVLDSLGISLVDGVLLDLGVSSHQLDTGSRGFSYHVDAPL 122

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS +G+SA D+VN A+ ++L RIL   GEEK A RI   IV+ RQ  P +TT  L+ 
Sbjct: 123 DMRMSQTGVSARDLVNTASPEELVRILFEYGEEKFARRIVAEIVEARQKEPIETTLQLAE 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+  V        +P  ++FQA+RI VN E++ L  GL +A   LK GG L V++FHSL
Sbjct: 183 LIKAGVPAKARREKNPCKKTFQAIRIAVNGELDHLTSGLDAAFACLKPGGRLAVITFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ FA      +           H    + + +K +    E++  N RSRSAKLR
Sbjct: 243 EDRLVKQKFAGWCKGCICPPDFPVCVCGHTPQGRLVNRKPIEAKPEELEENNRSRSAKLR 302

Query: 313 AGMRT 317
              R+
Sbjct: 303 IIERS 307


>gi|295102284|emb|CBK99829.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           L2-6]
          Length = 322

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 171/314 (54%), Gaps = 8/314 (2%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALD 65
           +       +H+PVLL + +  LN  P    LD T G  G+SR          G  +++LD
Sbjct: 8   AQFDPASFEHIPVLLNECLDGLNIDPAGTYLDGTAGGAGHSRQIALRLDGAKGGRLVSLD 67

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           +DP AV   +  +             ++ Q  + +  + ++G + DLGVSS Q+D   RG
Sbjct: 68  QDPDAVQTARARLAGLPATVVQINFRYAGQALESLGIEKINGALLDLGVSSHQLDDAARG 127

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS++   PLDMRMS  G +A+D+VN A+ ++L+RIL   GEE  A +IA  IV+ R++AP
Sbjct: 128 FSYRADAPLDMRMSQQGETAADLVNTASREELSRILRDYGEEPYAWQIAGRIVEARETAP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG
Sbjct: 188 IETTLQLADIVAGAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302
            L V++FHSLEDRLVK  F   S                 A  + IT+K +   ++++  
Sbjct: 248 RLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADKQELEE 307

Query: 303 NRRSRSAKLRAGMR 316
           NRRSRSA LR   +
Sbjct: 308 NRRSRSAHLRVLEK 321


>gi|57866678|ref|YP_188327.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           RP62A]
 gi|242242461|ref|ZP_04796906.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           W23144]
 gi|68565427|sp|Q5HQ13|RSMH_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57637336|gb|AAW54124.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           RP62A]
 gi|242234035|gb|EES36347.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           W23144]
 gi|319401527|gb|EFV89737.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           FRI909]
          Length = 311

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F +L + + +     VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHND 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVNQ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T +D+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|160915591|ref|ZP_02077802.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991]
 gi|158432711|gb|EDP11000.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL + +  L      + +D T G GG+S    +     ++ A DRD  A+   
Sbjct: 1   MSKHYSVLLSECLEGLAIRADGIYVDGTLGRGGHSAQILQRIPKGHLYAFDRDETAIKES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +      F+L    FS L++ + +     +DG++ DLGVSS Q D G+RGFS++   
Sbjct: 61  KERLLSIASNFTLIHNQFSMLKEELSNRGIYQIDGMLLDLGVSSPQFDDGERGFSYRYDA 120

Query: 132 PLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S    A DVVN  +  +L RI    GEEK A +IA  I K+R   P  TT +
Sbjct: 121 PLDMRMDQSQQKNAYDVVNSYDYHELVRIFYQYGEEKFAKQIAKNIEKQRAIKPIATTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+ ++     N + HPA + FQA+RI VN+E++E+   L+ A   L  GG L V+S
Sbjct: 181 LVEVIKASLPAKVLNKKGHPAKKVFQAIRIEVNDELKEIETVLQDAMDMLAVGGRLCVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK+ F  RS      + +   P +     ++ + +K ++ ++E++  N RS 
Sbjct: 241 FQSLEDRIVKEAFHERSTPKKVDKRIPMLPQDIETVDYRLVNRKPIIASEEELEENNRSH 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRIIERV 310


>gi|197302579|ref|ZP_03167634.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC
           29176]
 gi|197298477|gb|EDY33022.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC
           29176]
          Length = 326

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H+ VLL + +  LN  P  + +DAT G GG++   C        +I +D+D  A+ 
Sbjct: 16  MAFEHISVLLYETVDGLNVKPDGIYVDATLGGGGHAYEVCSRLGSQGRLIGIDQDADAIR 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + +  + E+ ++ ++ +  ++  +       VDG+  DLGVSS Q+D  +RGFS++ 
Sbjct: 76  AAGKRLECFGEKVTIVRSNYCDMKQQLQKLGIDKVDGITVDLGVSSYQLDTAERGFSYRV 135

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D++N  +  +L R++   GE++ A  IA  IV  R+ AP +TT
Sbjct: 136 DAPLDMRMDQRQKMTARDIINDYSESELYRVIRDYGEDRFAKNIAKHIVAERKKAPIETT 195

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I   +    +    HP+ R+FQA+RI +N+E++ L   L    + L  GG L +
Sbjct: 196 GQLNEIISHAIPMKVRKTSGHPSKRTFQAIRIELNHELDVLRDTLDDMIELLNPGGRLCI 255

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           H       + +  + IT+K ++P++E++  N RS
Sbjct: 256 ITFHSLEDRIVKSSFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEVNSRS 315

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 316 KSAKLRIFER 325


>gi|126741287|ref|ZP_01756965.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6]
 gi|126717605|gb|EBA14329.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6]
          Length = 330

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 155/330 (46%), Positives = 203/330 (61%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRD 67
           M++  +   G H+PVLL  ++A + P      LD TFGAGGY+R   + G S VI +DRD
Sbjct: 1   MTTDQNTANGPHIPVLLRPLLAAVAPVS-GRWLDGTFGAGGYTRGLLEEGASQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    +Y ++  L +  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAQPWATEYGDRLLLQEGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG SA+D+V       L  IL   GEE+ + RIA AIVK R   P  T
Sbjct: 118 MRDGPLDMRMSQSGPSAADLVANLEEAQLADILFQFGEERASRRIAKAIVKARAEEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+S+++  +  SK  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLQLASIVEGCLPRSKPGQSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK   A R+          F+ +T+K V P  E++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPELEEVETQFELVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPT 335
           RSA+LR G RT  E        + +P+L  
Sbjct: 298 RSARLRVGRRTMAEPVAISGKELGMPQLKE 327


>gi|57650291|ref|YP_186055.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221301|ref|YP_001332123.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|68565417|sp|Q5HGQ2|RSMH_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826643|sp|A6QG79|RSMH_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57284477|gb|AAW36571.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374101|dbj|BAF67361.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 311

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHRVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|15924169|ref|NP_371703.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926762|ref|NP_374295.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus N315]
 gi|21282791|ref|NP_645879.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49483342|ref|YP_040566.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486019|ref|YP_043240.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148267671|ref|YP_001246614.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393729|ref|YP_001316404.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979500|ref|YP_001441759.1| hypothetical protein SAHV_1169 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509356|ref|YP_001575015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140649|ref|ZP_03565142.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314966|ref|ZP_04838179.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733582|ref|ZP_04867747.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005966|ref|ZP_05144567.2| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425233|ref|ZP_05601658.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427893|ref|ZP_05604291.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430526|ref|ZP_05606908.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433287|ref|ZP_05609645.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436129|ref|ZP_05612176.1| methylase MraW [Staphylococcus aureus subsp. aureus M876]
 gi|257795765|ref|ZP_05644744.1| methylase MraW [Staphylococcus aureus A9781]
 gi|258415989|ref|ZP_05682259.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763]
 gi|258419736|ref|ZP_05682703.1| methylase MraW [Staphylococcus aureus A9719]
 gi|258444516|ref|ZP_05692845.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115]
 gi|258447651|ref|ZP_05695795.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus A6300]
 gi|258449493|ref|ZP_05697596.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224]
 gi|258451877|ref|ZP_05699898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948]
 gi|258454872|ref|ZP_05702836.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937]
 gi|262048753|ref|ZP_06021635.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30]
 gi|262051681|ref|ZP_06023900.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3]
 gi|269202794|ref|YP_003282063.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892665|ref|ZP_06300900.1| methylase MraW [Staphylococcus aureus A8117]
 gi|282903731|ref|ZP_06311619.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905495|ref|ZP_06313350.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908470|ref|ZP_06316300.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910752|ref|ZP_06318555.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913955|ref|ZP_06321742.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916429|ref|ZP_06324191.1| methylase MraW [Staphylococcus aureus subsp. aureus D139]
 gi|282918877|ref|ZP_06326612.1| methylase MraW [Staphylococcus aureus subsp. aureus C427]
 gi|282919960|ref|ZP_06327689.1| methylase MraW [Staphylococcus aureus A9765]
 gi|282924000|ref|ZP_06331676.1| methylase MraW [Staphylococcus aureus subsp. aureus C101]
 gi|282929224|ref|ZP_06336799.1| methylase MraW [Staphylococcus aureus A10102]
 gi|283770241|ref|ZP_06343133.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957922|ref|ZP_06375373.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024103|ref|ZP_06378501.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500988|ref|ZP_06666839.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509946|ref|ZP_06668655.1| methylase MraW [Staphylococcus aureus subsp. aureus M809]
 gi|293526535|ref|ZP_06671220.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848172|ref|ZP_06788919.1| methylase MraW [Staphylococcus aureus A9754]
 gi|295407117|ref|ZP_06816918.1| methylase MraW [Staphylococcus aureus A8819]
 gi|295427665|ref|ZP_06820297.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276145|ref|ZP_06858652.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208179|ref|ZP_06924609.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245997|ref|ZP_06929856.1| methylase MraW [Staphylococcus aureus A8796]
 gi|297591377|ref|ZP_06950015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300912257|ref|ZP_07129700.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381261|ref|ZP_07363914.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|42560201|sp|P60392|RSMH_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560202|sp|P60393|RSMH_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560203|sp|P60394|RSMH_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|48474288|sp|P60485|RSMH_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54036187|sp|Q6GA33|RSMH_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54036188|sp|Q6GHQ6|RSMH_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826623|sp|A7X1B8|RSMH_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826627|sp|A6U0Z9|RSMH_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826631|sp|A5IS65|RSMH_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826654|sp|A8Z3M0|RSMH_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831474|sp|Q2FHQ8|RSMH_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2149891|gb|AAC45622.1| unknown [Staphylococcus aureus]
 gi|13700978|dbj|BAB42274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246949|dbj|BAB57341.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204229|dbj|BAB94927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241471|emb|CAG40157.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244462|emb|CAG42890.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147740740|gb|ABQ49038.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946181|gb|ABR52117.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721635|dbj|BAF78052.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368165|gb|ABX29136.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728452|gb|EES97181.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271690|gb|EEV03828.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274734|gb|EEV06221.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278654|gb|EEV09273.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281380|gb|EEV11517.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284411|gb|EEV14531.1| methylase MraW [Staphylococcus aureus subsp. aureus M876]
 gi|257789737|gb|EEV28077.1| methylase MraW [Staphylococcus aureus A9781]
 gi|257839325|gb|EEV63799.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763]
 gi|257844321|gb|EEV68703.1| methylase MraW [Staphylococcus aureus A9719]
 gi|257850009|gb|EEV73962.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115]
 gi|257853842|gb|EEV76801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus A6300]
 gi|257857481|gb|EEV80379.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224]
 gi|257860485|gb|EEV83312.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948]
 gi|257863255|gb|EEV86019.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937]
 gi|259160416|gb|EEW45441.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3]
 gi|259163209|gb|EEW47769.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30]
 gi|262075084|gb|ACY11057.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940673|emb|CBI49052.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313972|gb|EFB44364.1| methylase MraW [Staphylococcus aureus subsp. aureus C101]
 gi|282316687|gb|EFB47061.1| methylase MraW [Staphylococcus aureus subsp. aureus C427]
 gi|282319869|gb|EFB50217.1| methylase MraW [Staphylococcus aureus subsp. aureus D139]
 gi|282322023|gb|EFB52347.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325357|gb|EFB55666.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327532|gb|EFB57815.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330787|gb|EFB60301.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589183|gb|EFB94280.1| methylase MraW [Staphylococcus aureus A10102]
 gi|282594676|gb|EFB99660.1| methylase MraW [Staphylococcus aureus A9765]
 gi|282595349|gb|EFC00313.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764662|gb|EFC04787.1| methylase MraW [Staphylococcus aureus A8117]
 gi|283460388|gb|EFC07478.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470389|emb|CAQ49600.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283790071|gb|EFC28888.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816861|gb|ADC37348.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus 04-02981]
 gi|290920607|gb|EFD97670.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095993|gb|EFE26254.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467396|gb|EFF09913.1| methylase MraW [Staphylococcus aureus subsp. aureus M809]
 gi|294824972|gb|EFG41394.1| methylase MraW [Staphylococcus aureus A9754]
 gi|294967970|gb|EFG43998.1| methylase MraW [Staphylococcus aureus A8819]
 gi|295128023|gb|EFG57657.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886918|gb|EFH25821.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177161|gb|EFH36415.1| methylase MraW [Staphylococcus aureus A8796]
 gi|297576263|gb|EFH94979.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300886503|gb|EFK81705.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304340244|gb|EFM06185.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312438444|gb|ADQ77515.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829573|emb|CBX34415.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130970|gb|EFT86954.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196909|gb|EFU27252.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313847|gb|AEB88260.1| Ribosomal RNA small subunit methyltransferase H [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725033|gb|EGG61529.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329727402|gb|EGG63858.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 311

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|172057976|ref|YP_001814436.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum
           255-15]
 gi|263447041|sp|B1YIU3|RSMH_EXIS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171990497|gb|ACB61419.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum
           255-15]
          Length = 312

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 8/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H  VL  + I  LN  P  + +D T G  G+S    K     ++ A D+D  A++  
Sbjct: 1   MFEHETVLKWESIKGLNIKPDGIYVDCTLGGAGHSEEIVKQLTTGHLYAFDQDDVALAHA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y+ +F+L ++ F  L++ +  +    VDG++FDLGVSS Q+D G+RGFS+    
Sbjct: 61  AERLAAYEGRFTLIKSNFVHLKEELEARSVTKVDGILFDLGVSSPQLDEGERGFSYNFDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA +VVN+    DL RIL   GEEK + +IA  I K R+ AP +TT +
Sbjct: 121 RLDMRMDQTSPLSAYEVVNEWPYNDLVRILFTYGEEKFSKQIARKIEKAREIAPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   ++    HPA R+FQA+RI VN+E+    + +  A   L  GG L V++
Sbjct: 181 LVELIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVYQAIDLLAVGGRLCVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F  +S      + +           + +T+K +    +++  NRRSRS
Sbjct: 241 FHSLEDRMCKQAFKEKSSLPELPQGLPMIPKEFEPELRLVTRKPITAGDDELDDNRRSRS 300

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 301 AKLRIVEKMKE 311


>gi|251810609|ref|ZP_04825082.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876390|ref|ZP_06285257.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           SK135]
 gi|251805769|gb|EES58426.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295415|gb|EFA87942.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           SK135]
 gi|329734446|gb|EGG70759.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU045]
          Length = 311

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T +D+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|163746120|ref|ZP_02153479.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45]
 gi|161380865|gb|EDQ05275.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 148/320 (46%), Positives = 201/320 (62%), Gaps = 6/320 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL  ++  + P    V LD TFGAGGY+R F + G+  VIA+DRDP A     E  
Sbjct: 11  HTPVLLRPILTAVAPVE-GVWLDGTFGAGGYTRGFLEAGAARVIAVDRDPLAFEMAAEWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ ++ Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMRMS
Sbjct: 70  GDFGDRITMQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDQAERGFSFMKDGPLDMRMS 127

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A  + +  IL   GEE+ + RIA +IV+ R+ AP  TT +L+ L++  
Sbjct: 128 QDGPSAADLVNEAEEEIIANILFQYGEERASRRIAKSIVRAREVAPITTTLELAKLVEGC 187

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQALRI VNNE  EL QGL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 188 LPRSKPGQSHPATRSFQALRIAVNNEYGELFQGLMAAERALKPGGKLAVVTFHSVEDRMV 247

Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G         P+       F   ++K + P  +++  N RSRSAKLR   RT
Sbjct: 248 KRFLTARAGAGGNANRFAPALEQEAPQFTLKSRKAIGPDAQELDENPRSRSAKLRVATRT 307

Query: 318 VERSIEDD-SFVHLPRLPTL 336
              S E D   + +P +  +
Sbjct: 308 DAPSGEIDAKSIGMPMVRGI 327


>gi|299821551|ref|ZP_07053439.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601]
 gi|299817216|gb|EFI84452.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601]
          Length = 313

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL + + +L+  P  + +DAT G  G+S           ++ A D+D  A+   +
Sbjct: 6   KHDTVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLNKKGHLYAFDQDQTAIDHAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y    +  ++ F  +++ + +     VDG+++DLGVSS Q+D  +RGFS+ +   
Sbjct: 66  ERLAPYTGSVTFVKSNFRFMKEALAEHGVTEVDGILYDLGVSSPQLDVRERGFSYHQDAE 125

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A +VVN+   +DL RI    GEEK + +IA  I +RR     +TT +L
Sbjct: 126 LDMRMDQEQSLTAKEVVNEWRYEDLVRIFFQYGEEKFSKQIAREIERRRSEKTIETTGEL 185

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HP  R FQA+RI VN+E++ +++ L  A   LK  G + V++F
Sbjct: 186 VDIIKTAIPAPARRKGGHPGKRVFQAIRIAVNDELDAVSESLEKALLLLKTNGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F  ++      R +    + +   F+ +T+K ++P++ ++A N R+RSA
Sbjct: 246 HSLEDRITKQLFKQKTTAQETPRGLPVIPDEYQPDFELVTRKPILPSEAEMATNNRARSA 305

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 306 KLRVIAK 312


>gi|258423777|ref|ZP_05686663.1| methylase MraW [Staphylococcus aureus A9635]
 gi|257846009|gb|EEV70037.1| methylase MraW [Staphylococcus aureus A9635]
          Length = 311

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVEGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|152968667|ref|YP_001333776.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893062|ref|YP_002917796.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044874|ref|ZP_06017917.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|330012015|ref|ZP_08307232.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3]
 gi|263456196|sp|A6T4M5|RSMH_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150953516|gb|ABR75546.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545378|dbj|BAH61729.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037843|gb|EEW39071.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328534004|gb|EGF60656.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3]
          Length = 313

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FSQL +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---DDPRFSIVHGPFSQLAEYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAAMPVKDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|270291462|ref|ZP_06197684.1| methylase MraW [Pediococcus acidilactici 7_4]
 gi|304385176|ref|ZP_07367522.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM
           20284]
 gi|270280308|gb|EFA26144.1| methylase MraW [Pediococcus acidilactici 7_4]
 gi|304329370|gb|EFL96590.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM
           20284]
          Length = 317

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 169/315 (53%), Gaps = 11/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T   H  VLLE+ +A LN     V +D T G GG+S+          ++ + D+D  A+ 
Sbjct: 2   TEFKHTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127
             Q+ +  Y   +Q +  +A F  L++ +  +G+D    +++DLGVSS Q D   RGFS+
Sbjct: 62  YNQDHLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM  S   +A  VVN+ +  DL RI    GEEK A ++A  I K R+  P  
Sbjct: 122 RYDAPLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPIV 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA R FQA+RI VN+E+  L + L  A   L   G +
Sbjct: 182 TTGELVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK+ F  ++          +        F+ + +K +VP+++++  NR
Sbjct: 242 SVITFQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPHFKLVNRKPIVPSEDELKENR 301

Query: 305 RSRSAKLRAGMRTVE 319
           R+ SAKLR   +  E
Sbjct: 302 RAHSAKLRIIEKLQE 316


>gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
 gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
          Length = 330

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 145/333 (43%), Positives = 198/333 (59%), Gaps = 10/333 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +A       HVPVLL  ++  + P      +D TFGAGGYSR   + G+  VI +DRDP 
Sbjct: 4   AADTSDNAPHVPVLLRPLLDAVAPVS-GTWVDGTFGAGGYSRGLLEAGADRVIGIDRDPL 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     E +  Y  +  L +  F+ +  YV   G DGVV DLGVSSMQ+D  +RGFSFQ+
Sbjct: 63  AHRMAAEWIGSYGGRLELVEGNFADMDQYVS--GADGVVLDLGVSSMQLDIAERGFSFQR 120

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM  +G SA+++V + +   L  +L   GEE+ + RIA AIVK R+  P +TT 
Sbjct: 121 DGPLDMRMEQAGESAAELVKRLDETTLADVLYTYGEERASRRIARAIVKAREQEPIETTA 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            LS++++  +   K  + HPATRSFQALRI VN+E   L +GL +AEKALK GG L VV+
Sbjct: 181 RLSAIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAEKALKPGGFLCVVT 240

Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHS+EDR+VK+F  +RSG+     R+     A    F ++T+K + P  +++A N RSRS
Sbjct: 241 FHSVEDRMVKRFLQARSGRLGAVSRYAPVVEAEEPQFVTMTRKAIGPDDDELAANPRSRS 300

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           A+LR G RT     +       P    + Q RG
Sbjct: 301 ARLRIGQRTSADPGDVS-----PDTLNMPQLRG 328


>gi|302332784|gb|ADL22977.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 311

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQAAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVVPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|315639624|ref|ZP_07894764.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus italicus DSM 15952]
 gi|315484585|gb|EFU75041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus italicus DSM 15952]
          Length = 318

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/315 (32%), Positives = 165/315 (52%), Gaps = 11/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VL ++ +  L   P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 1   MEFQHYTVLKKETVEGLAIKPDGIYVDCTLGGAGHSEYLLSQLGPDGHLYAFDQDQKALD 60

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             ++ ++ +  K Q +  ++ F +L+  + +     VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 61  FAKQRLQSFVDKGQVTFIKSNFRELKSKLAELDVMKVDGILYDLGVSSPQLDEAERGFSY 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  S   SA D+VN  +  +L +I    GEEK + +IA  I + R + P +
Sbjct: 121 HQDAPLDMRMDQSASFSAHDLVNTYSYNELVKIFFRYGEEKFSKQIAREIERVRANQPIE 180

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A + L   G +
Sbjct: 181 TTSELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIELLAIHGRI 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDRLVK  F   S        +    + +  +   I +K +  ++ ++  N 
Sbjct: 241 SVITFHSLEDRLVKNMFKEYSQVKELPPGLPVIPDEYQPMLTVINRKPITASELELEENN 300

Query: 305 RSRSAKLRAGMRTVE 319
           RSRSAKLR   +  E
Sbjct: 301 RSRSAKLRIVEKVKE 315


>gi|56964129|ref|YP_175860.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16]
 gi|115311580|sp|Q5WFG1|RSMH_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56910372|dbj|BAD64899.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16]
          Length = 314

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ VL E+ +  L   PG V +D T G GG+S           ++ A D+D  A+S 
Sbjct: 1   MFSHITVLKEESVNGLAVKPGGVYVDCTLGGGGHSERILTALAGEGHLYAFDQDEAALSF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  +KE  +  ++ F  +++ +  +    VDG++FDLGVSS Q+D   RGFS+ + 
Sbjct: 61  AAEKLSRFKENITFIRSNFRHIKEELRMRGVDKVDGILFDLGVSSPQLDEASRGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN      L  I+   GEEK + +IA  I   R   P +TT 
Sbjct: 121 APLDMRMDQSASLTAREVVNTWPFAKLHSIISRYGEEKFSKQIARKIEAYRLKQPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R+FQA+RI VN+E+      L    + L  GG + V+
Sbjct: 181 ELVDIIKEAIPAPARRAGGHPAKRTFQAIRIAVNDELGAFEDALTDGFELLNEGGRMAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F  ++      + +        A F  ITKK +V   E++  N R+R
Sbjct: 241 TFHSLEDRLCKQMFKEKTKLPDLPKGLPIIPADQKAPFALITKKPIVANDEEIKANNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIIEK 309


>gi|289551038|ref|YP_003471942.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658534|ref|ZP_07911406.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           M23590]
 gi|289180570|gb|ADC87815.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496863|gb|EFU85186.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           M23590]
          Length = 311

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN  P  V +D T G  G++           ++IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKPDGVYVDCTLGGAGHALYLLNQLNDEGHLIAIDQDTTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++ +  + +     F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKAHLHKVTFVHNNFRELTHILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDRTQTLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEAHRELQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K  G + V+
Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I    +    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKLKRVNRKPITATEEDLNQNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|328957120|ref|YP_004374506.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4]
 gi|328673444|gb|AEB29490.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4]
          Length = 318

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T  +H  VLL + +  L+ +P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 2   TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLDENGHLFAFDQDERAIE 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +  + +Y  K   +  +A F  +++ + +     VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 62  NAKVRLAEYVEKGMVTFIKANFRNIKEELTERGINEVDGILYDLGVSSPQLDEAERGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM     ++A DVVN+ +  DL RI    GEEK + +IA  I   R+  P +
Sbjct: 122 HQDAPLDMRMDTDAPLTAKDVVNEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKPIE 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  LI+  +    +    HPA R FQA+RI VN+E+  +   L  A + L  GG +
Sbjct: 182 TTSELVELIKSGIPAPARRKGGHPAKRVFQAIRIAVNDELSSVEDSLEQAIELLAIGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK  F   S      R +    +      + IT+K ++P++E++A N 
Sbjct: 242 SVISFHSLEDRIVKTIFKDHSKGPELPRGLPVIPDGFLPELKLITRKPILPSEEELAVNN 301

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLR   +
Sbjct: 302 RSRSAKLRIAEK 313


>gi|260912995|ref|ZP_05919480.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pasteurella dagmatis ATCC 43325]
 gi|260632985|gb|EEX51151.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pasteurella dagmatis ATCC 43325]
          Length = 321

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 117/324 (36%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNKQNTFSSPEHITVLLNEAVDGLALKERGIYIDGTFGRGGHSRLILSKLSDNGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEANKI---QDARFHIEHNSFSAIPEICEKLGLTGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SAS+ + Q +  DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSESDLAWVLKTFGEERFAKRIASAIVNYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    +  L+  +Q           K+   HPATRSFQA+RIF+N E++EL   L+SA
Sbjct: 178 KSAQQNGSGPLTRTLQLAELIAQSVPFKDKHKHPATRSFQAIRIFINAELDELESVLQSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q++    K +
Sbjct: 238 LSVLAPEGRLSIISFHSLEDRMVKHFMRKQSKGESLPKGLPLREDQIKRSQTLKTIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
           +P++E+ A N RSRSA LR   + 
Sbjct: 298 MPSEEEQANNPRSRSAVLRVAEKI 321


>gi|82750786|ref|YP_416527.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus RF122]
 gi|123549021|sp|Q2YXE3|RSMH_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82656317|emb|CAI80731.1| S-adenosyl-methyltransferase [Staphylococcus aureus RF122]
          Length = 311

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++++  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKVLKEHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + I +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRINRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|329924124|ref|ZP_08279357.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5]
 gi|328940856|gb|EGG37166.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5]
          Length = 317

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL ++    L   P  + +D T G  G+S            +IALD+D +A++ 
Sbjct: 1   MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E M+ Y ++ +L +  F  L++               VDG++FDLGVSS Q D G+RG
Sbjct: 61  AREAMKPYADRITLVKTNFRDLEEVLRSEVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR  +
Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P QTT +L  +I++ +  + +    HPA RSFQA RI VN+E+      L  A + L  G
Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHSLEDR+ K+ F S   K                   + + +K ++P+ E++
Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 ESNPRARSAKLRIAEK 316


>gi|229019122|ref|ZP_04175956.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1273]
 gi|229025365|ref|ZP_04181783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1272]
 gi|228735950|gb|EEL86527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1272]
 gi|228742138|gb|EEL92304.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1273]
          Length = 302

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 9/300 (3%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
           ++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E    Y 
Sbjct: 2   KETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSYG 61

Query: 83  EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+    PLDMRM  
Sbjct: 62  EQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMDQ 121

Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
              ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L  LI++ 
Sbjct: 122 DAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELVELIKEG 181

Query: 199 VYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           +    +    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FHSLEDR+
Sbjct: 182 IPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDRI 241

Query: 258 VKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            K  F   S          I  +      + IT+K ++P+  ++  N R+RSAKLR   +
Sbjct: 242 CKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAEK 301


>gi|225028107|ref|ZP_03717299.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353]
 gi|224954577|gb|EEG35786.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353]
          Length = 315

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 167/306 (54%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  ++LE+VI  L   P  + +D T G  G+S    K       +I +D+D  A+    +
Sbjct: 5   HKSIMLEEVIESLAIKPNGIYVDGTLGGAGHSSEIVKRLGEDGRLIGIDQDGEAIEAATK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ YK++ ++ ++ ++Q+++ + D     VDG++ DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLKPYKDKVTIVRSNYAQMKEVLRDLGIPKVDGILLDLGVSSYQLDNAERGFTYREDVPL 124

Query: 134 DMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM       + D+VN  +  +L  I+   GE+K A  IA  IV+ RQ  P +TT  L 
Sbjct: 125 DMRMDQRQTKTAKDIVNDYSEMELYHIIRNYGEDKFAKNIAKHIVQARQKTPIETTGQLI 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQA+RI +N+E++ L   L      L   G + +++FH
Sbjct: 185 EVIKAAIPKKVRATGGHPAKKTFQAIRIELNHELDVLKNNLEDMIDLLNDEGRIAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F +     +             +  + IT+K +VP +E++  N RS+SAK
Sbjct: 245 SLEDRIVKNIFRTSERPCICPPEFPVCVCGRVSKGKVITRKPIVPGKEELEENSRSKSAK 304

Query: 311 LRAGMR 316
           LR   R
Sbjct: 305 LRVFER 310


>gi|332187132|ref|ZP_08388872.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17]
 gi|332012832|gb|EGI54897.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17]
          Length = 326

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 135/316 (42%), Positives = 197/316 (62%), Gaps = 10/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS A++     H+PVLL++V+  L   PG+  +D TFGAGGY+R+    G+ VIA DRDP
Sbjct: 1   MSPAVND--APHIPVLLDEVLDALAILPGETHVDGTFGAGGYTRAMLGRGAKVIAFDRDP 58

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++ GQ  ++      +L    FS L     +  VDGVV D+GVSSMQ+D  +RGFSFQ
Sbjct: 59  DAIANGQALIQAEPG-LALVHREFSGLDQA-LEAQVDGVVLDIGVSSMQLDQAERGFSFQ 116

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM+ +G SA+D +N A+   +  +L   GEE ++ R+A AIV  R       T
Sbjct: 117 GDGPLDMRMAQAGESAADFLNTADEAAIADVLYHYGEEPRSRRVAQAIVAARPLMR---T 173

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++++++ + +  +++  PATR+FQA+RI VN E+EELA+GL +AE+ALK GG L +V
Sbjct: 174 GELAAVVRRALGYRPHDKKDPATRTFQAIRIHVNRELEELAEGLAAAERALKPGGRLAIV 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+FF  R+G++      +P    A    F ++  K V     ++A N R+
Sbjct: 234 TFHSLEDRMVKRFFRERAGQLPGGSRHLPQQVAAQAPSFTAV-GKAVRAGAAELARNPRA 292

Query: 307 RSAKLRAGMRTVERSI 322
           RSA LR   RT   + 
Sbjct: 293 RSATLRFATRTESPAW 308


>gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 333

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 133/312 (42%), Positives = 190/312 (60%), Gaps = 7/312 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PVLL++VI  L+P  G + +D TFGAGGYSR+  +   + VIA DRDP A+  G  
Sbjct: 8   APHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAS 67

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GPL
Sbjct: 68  LVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGPL 127

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM+ +G+SA +++N A  KD+  +L + GEE+Q+ R+A AIV+   +A  +    L+ 
Sbjct: 128 DMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIVR--GTAFKRRLFRLAK 185

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G L VV+FHSL
Sbjct: 186 VIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHSL 245

Query: 254 EDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK F    +G+     RH         VF S   + V   + ++A N R+RSA LR
Sbjct: 246 EDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATLR 305

Query: 313 AGMRTVERSIED 324
           A  RT     ED
Sbjct: 306 AVYRTETPFSED 317


>gi|194014300|ref|ZP_03052917.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061]
 gi|194013326|gb|EDW22891.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061]
          Length = 310

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN       +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + D K      ++ F  L++ + ++    VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AREKLADSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   SA  VVN+   +DL RI    GEEK + +IA  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E++   + L  A + L   G + V+
Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +           + IT+K +V +++++  N R+R
Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|114570636|ref|YP_757316.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10]
 gi|123127593|sp|Q0AMV9|RSMH_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114341098|gb|ABI66378.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10]
          Length = 334

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 132/332 (39%), Positives = 196/332 (59%), Gaps = 9/332 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
           ++  H+PV++ +V+  L P  G + +D TFGAGGYSR         +I +DRDP      
Sbjct: 2   SVAPHIPVMMSEVLHALEPRSGALYIDGTFGAGGYSRGILSAADCKLIGIDRDPAVQPTA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + ++    +F+  +A FS + +         VDG+V D+GVSSMQID  +RGFSF + G
Sbjct: 62  TQLVQASGGRFAFAEAPFSAMGEVLASRGIDQVDGIVLDIGVSSMQIDQAERGFSFMRKG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM+ SG +A+D VN+    +L  I  + GEE+++ RIA  I   R  A  +TT  L
Sbjct: 122 PLDMRMAASGPTAADAVNRLKEAELADIFYVYGEERRSRRIAKFICTARAEAKIETTDRL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ +     K+++IHPAT+ FQALRIFVN+E+ ELA+ L ++E+ L   G L+VV+FH
Sbjct: 182 AEIVTRAT-GGKHSKIHPATKVFQALRIFVNDELGELARALEASERLLAPLGRLVVVTFH 240

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK F  SR+G       R+     A P   F  +T++ V  + E+ A N R+RS
Sbjct: 241 SLEDRMVKTFLRSRAGLAGGGGSRYEPAVEAGPAPSFSLLTRRAVSASDEEAAENPRARS 300

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLRA +R    +  D   +H   +P L++  
Sbjct: 301 AKLRAAIRNEAPAWSDSPSLHTSIVP-LARLE 331


>gi|320179644|gb|EFW54593.1| rRNA small subunit methyltransferase H [Shigella boydii ATCC 9905]
          Length = 313

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  PG + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPGGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|300774256|ref|ZP_07084123.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300758935|gb|EFK55764.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 303

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           +   HVPV+L++ I  L+  P  V +D TFG GG+SR   K       + A D+DP A+ 
Sbjct: 2   SNVYHVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALE 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                     E+F+L    F  L++       K VDG++ DLGVSS Q D  DRGFS + 
Sbjct: 62  NTIA-----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRF 116

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM       A  V+N    +DL RI G+ GE   A  +A  +V  R SAP +T 
Sbjct: 117 DADLDMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETV 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  +I+K V   K ++ H   + FQALRI VN E+E L + L      LK  G L+V+
Sbjct: 177 AGLKEVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVM 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK F A    K    +    +   P  FQ IT+K +  ++E+++ N RSRS
Sbjct: 235 SYHSLEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRS 292

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 293 AKLRVAEK 300


>gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 355

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 152/327 (46%), Positives = 202/327 (61%), Gaps = 9/327 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQE 76
             HVPVL E+V+A L+   G   LDATFGAGGY+R+   +  ++V+A+DRDP A++ G+ 
Sbjct: 17  ARHVPVLREEVVAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRA 76

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   +  L    FS L D          DG+VFD+GVSSMQ+D  +RGFSF+  GPL
Sbjct: 77  LEAESAGRLILAHGRFSTLADIAAAEGIPAFDGIVFDIGVSSMQLDQPERGFSFRGEGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D+VN A+ + L  I    GEE+ + RIA AIV  R   PF TT+ L+ 
Sbjct: 137 DMRMESRGPSAADLVNTADEQRLADIFYYFGEERASRRIARAIVTDRAHTPFTTTRQLAE 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI + V   K   IHPATR FQALRI VN E+ EL + L +AE  L+ GG L+VV+FHSL
Sbjct: 197 LIAR-VNPGKPGDIHPATRVFQALRIAVNEELLELVRALAAAEALLREGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+F A+RSG+  AV   +P      P  F    K+ V+P+ E++A N R+RSAKL
Sbjct: 256 EDRIVKQFLAARSGRGQAVSRPLPGEPALAPPTFILPGKQPVLPSPEEIAVNPRARSAKL 315

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           R G+RT   +   +S   L  L TL +
Sbjct: 316 RFGLRTAAPARGLES--GLLPLATLPE 340


>gi|157147494|ref|YP_001454813.1| S-adenosyl-methyltransferase MraW [Citrobacter koseri ATCC BAA-895]
 gi|263446032|sp|A8ALL4|RSMH_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157084699|gb|ABV14377.1| hypothetical protein CKO_03293 [Citrobacter koseri ATCC BAA-895]
          Length = 314

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 15/318 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP 
Sbjct: 1   MMMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A++  Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAQAI---NDPRFSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P
Sbjct: 118 SFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG 
Sbjct: 178 MTRTKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVA 301
           L ++SFHSLEDR+VK+F   +S        +  +          +      ++P +E+VA
Sbjct: 237 LSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGKLMPGEEEVA 296

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RS+ LR   RT  
Sbjct: 297 ENPRARSSVLRIAERTNA 314


>gi|206580699|ref|YP_002240446.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342]
 gi|288937146|ref|YP_003441205.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22]
 gi|290512569|ref|ZP_06551935.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55]
 gi|263456192|sp|B5Y1V5|RSMH_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206569757|gb|ACI11533.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342]
 gi|288891855|gb|ADC60173.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22]
 gi|289774910|gb|EFD82912.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55]
          Length = 313

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FSQL DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIVHGPFSQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAAMPVKDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|227538294|ref|ZP_03968343.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241809|gb|EEI91824.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 303

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           +   HVPV+L++ I  L+  P  V +D TFG GG+SR   K       + A D+DP A+ 
Sbjct: 2   SNVYHVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALE 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                     E+F+L    F  L++       K VDG++ DLGVSS Q D  DRGFS + 
Sbjct: 62  NTIA-----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRF 116

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM       A  V+N    +DL RI G+ GE   A  +A  +V  R SAP +T 
Sbjct: 117 DADLDMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETV 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  +I+K V   K ++ H   + FQALRI VN E+E L + L      LK  G L+V+
Sbjct: 177 AGLKEVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVM 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK F A    K    +    +   P  FQ IT+K +  ++E+++ N RSRS
Sbjct: 235 SYHSLEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRS 292

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 293 AKLRVAEK 300


>gi|256003312|ref|ZP_05428303.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           2360]
 gi|281417697|ref|ZP_06248717.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20]
 gi|255992602|gb|EEU02693.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           2360]
 gi|281409099|gb|EFB39357.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20]
 gi|316940267|gb|ADU74301.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           1313]
          Length = 313

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 109/313 (34%), Positives = 164/313 (52%), Gaps = 11/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PVLLE+ I+ L   P  V +D T G  G+S    K       +I LD+D FA+ 
Sbjct: 1   MEFQHKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIK 60

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127
             QE +     +    L    F  +++      ++    ++ DLGVSS Q+D   RGFS+
Sbjct: 61  TSQEKLAQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K  PLDMRM   G  +A  +VN+   +++ RI+   GEEK ASRIA  IV+ R+    +
Sbjct: 121 NKDAPLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIE 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +  S +    HPA R+FQALRI VNNE+  LA+ +    + LK GG  
Sbjct: 181 TTGELVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRF 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F  +    +  +     +         + +K +VP ++++  N 
Sbjct: 241 CIITFHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENP 300

Query: 305 RSRSAKLRAGMRT 317
           R+RSAKLR   + 
Sbjct: 301 RARSAKLRVLEKI 313


>gi|332768872|gb|EGJ99051.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2930-71]
          Length = 312

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 2   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 62  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 118

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   
Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTR 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 238 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 297

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 298 RARSSVLRIAERTNA 312


>gi|239996439|ref|ZP_04716963.1| S-adenosyl-methyltransferase MraW [Alteromonas macleodii ATCC
           27126]
          Length = 313

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 13/312 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
            +   H+ VLL++ I  L   P  + +DATFG GG+S            +IA DRDP A+
Sbjct: 4   PSEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQAI 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              +    D +  FS+  + F  + + +        +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 64  KAAERFADDKR--FSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSF 121

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA+D +  A  +D+T+++   GEEK   RIAHAIV  R+  P  
Sbjct: 122 LRDGPLDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPIT 181

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T  L+ +I + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L 
Sbjct: 182 RTAQLAKIIDEAV-PVKDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNR 304
           V+SFHSLEDRLVK+F   +S       ++  + A     + +    K + P+++++A N 
Sbjct: 241 VISFHSLEDRLVKRFIKDQSKGKSVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNV 300

Query: 305 RSRSAKLRAGMR 316
           RSRS+ LR   +
Sbjct: 301 RSRSSVLRVAEK 312


>gi|302391523|ref|YP_003827343.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM
           5501]
 gi|302203600|gb|ADL12278.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM
           5501]
          Length = 311

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+PVLL + I LL+     + +D T G GG++            +I +D+D  A+   +
Sbjct: 4   EHIPVLLTETIELLDCKEDGIYVDCTVGGGGHAVEIADKLTTDGTLIGIDQDLAAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132
           E++ + + +  L +  +  +   +   G+D V   +FDLG SS QID   RGFS+Q   P
Sbjct: 64  ESLSNAECKVELVRDNYKNIDRVLNRFGIDSVDGLLFDLGFSSHQIDTAQRGFSYQYEAP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+D+VN  +  +LT I+   GEEK ASRIA  IV+ RQ  PF+ T +L
Sbjct: 124 LDMRMDQRASRTAADLVNDLSQSELTDIIAEYGEEKWASRIAEFIVRYRQDKPFKLTTEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I+  +    + +  HPA R+FQALRI VNNE+E L + L      LK+GG +  ++F
Sbjct: 184 VETIKAAIPAGARRSGPHPAKRTFQALRIAVNNELEVLTKTLDKIVPLLKSGGRMAFITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +        +    A  + ITKK +   Q+++  N R+RSA
Sbjct: 244 HSLEDRIVKHKFKELAQDCICPPDFPVCACDEEAEVEIITKKPITAQQKEIDDNPRARSA 303

Query: 310 KLRAGMR 316
           KLRA  +
Sbjct: 304 KLRAAEK 310


>gi|261367518|ref|ZP_05980401.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM
           15176]
 gi|282570299|gb|EFB75834.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM
           15176]
          Length = 307

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL+  +  L   P  + LD T G  G+S    K      +I+LD+DP AV+   E 
Sbjct: 5   HIPVLLQPCLDGLAIDPTGIYLDGTAGGAGHSMQIAKRLTTGRLISLDQDPDAVAVATER 64

Query: 78  MRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++    Q        + ++   +    V+G + DLGVSS Q+D   RGFS+    PLDMR
Sbjct: 65  LKGLPAQVVQANFRDAARVLAELSIPAVNGALLDLGVSSHQLDDAARGFSYHADAPLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G +A+D+VN  + ++LTRIL   GEE  A +IA  IV  R   P  TT  L+ L+ 
Sbjct: 125 MSQQGPTAADLVNTLDREELTRILRDYGEEPYAWQIAGKIVATRAEQPITTTLQLADLVA 184

Query: 197 KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             V  ++  +  +PA R+FQA+RI VN+E++ L +GL +    L  GG L V++FHSLED
Sbjct: 185 SAVPPAERRKAKNPARRTFQAIRIAVNSELDVLNEGLDAIFNCLAPGGRLCVITFHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RLVK  F   + +        I +       + IT+K +    E++  NRR+RSAKLR  
Sbjct: 245 RLVKNKFRRWAQRCTCPPEQPICTCGGVPKAKLITRKPIEADAEELEHNRRARSAKLRVL 304

Query: 315 MRT 317
            + 
Sbjct: 305 EKV 307


>gi|284919862|emb|CBG32917.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli 042]
          Length = 312

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 2   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 62  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 118

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 238 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 297

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 298 RARSSVLRIAERTNA 312


>gi|160944903|ref|ZP_02092130.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444087|gb|EDP21091.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii
           M21/2]
          Length = 321

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 8/310 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDPF 69
               +H+PVLL + +  L   P    LD T G  G+SR          G  +I+LD+DP 
Sbjct: 11  PASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPD 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           AV   +  +             ++ Q  + +  + ++G + DLGVSS Q+D   RGFS++
Sbjct: 71  AVQTARSRLAGLPATVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYR 130

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++AP  TT
Sbjct: 131 ADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVEARETAPILTT 190

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V
Sbjct: 191 LQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCV 250

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDRLVK  F   S                 A  + IT+K +    +++  NRRS
Sbjct: 251 ITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRS 310

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 311 RSAHLRVLEK 320


>gi|145297477|ref|YP_001140318.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|263446607|sp|A4SI48|RSMH_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|142850249|gb|ABO88570.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 312

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 14/312 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
            +H+ VLL + +  L   P  + +D TFG GG+SR   +       +IA+DRDP A++  
Sbjct: 5   AEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIAEA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +       +F +    FS +  Y+ ++     VDG + DLGVSS Q+D  +RGFSF K 
Sbjct: 65  AKI---QDPRFEIVHGPFSGIVSYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G SA+  + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T+
Sbjct: 122 GPLDMRMDPTSGQSAAQWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTR 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I + V  SK    H ATRSFQA+RI++N+E++E+   L  A +AL   G L V+S
Sbjct: 182 QLAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQALAPEGRLSVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK F           R +  + A  A  + +    K + P++ +V  N RSR
Sbjct: 241 FHSLEDRLVKHFIRKHEKGPEVPRGIPLTEAQLAGGRKLKSVGKALKPSEHEVTENSRSR 300

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 301 SSVLRVAQRLAE 312


>gi|329728859|gb|EGG65280.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 311

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            ++A+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLLAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|322513875|ref|ZP_08066954.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinobacillus ureae ATCC 25976]
 gi|322120274|gb|EFX92221.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinobacillus ureae ATCC 25976]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 167/315 (53%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T   H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTAHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSERGRLIATDRDPS 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + +          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---TDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + G LDMRM    G+SA++ + Q +V DL  +L   GEE+ A RIA A+    +S  
Sbjct: 118 SFMRDGSLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVFSYNKSTT 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + ++ L            K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   G
Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S  +   + +    S  +  +      K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKTIGKAIMPSEAEIE 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANPRSRSAVLRIAEK 312


>gi|268319710|ref|YP_003293366.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785]
 gi|262398085|emb|CAX67099.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785]
          Length = 340

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 13/329 (3%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           M       M+S+       H  VLL + I  LNP  G + +DATFG GG++R      + 
Sbjct: 11  MTISQKTWMTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNK 70

Query: 61  --VIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVF 109
             VI  D+D +A+S  +E+         + +  L    F  L++         G+DG+ +
Sbjct: 71  GTVIGFDQDEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYY 130

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSS Q D  +RGFS++    LDMRM  S    A  +VN  + K+L+ +L   G+EK 
Sbjct: 131 DLGVSSPQFDQPERGFSYRFDARLDMRMDQSQELDAYTMVNTWSQKELSDVLYKYGDEKF 190

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227
           + +IA  IV RR+  P  TT DL  +I+  +    + +  HPA +SFQA+R+ VNNE+  
Sbjct: 191 SRQIARKIVDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELVV 250

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           L + L  A K LK GG + V++F S ED++VKK F   S   +     +         + 
Sbjct: 251 LQESLEEAIKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRL 310

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           I++K ++ + +++  N RS SAKLR   +
Sbjct: 311 ISRKPIMASSDELEENNRSHSAKLRVAEK 339


>gi|117620544|ref|YP_858331.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|263446603|sp|A0KPY0|RSMH_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117561951|gb|ABK38899.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 312

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 174/312 (55%), Gaps = 14/312 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
            +H+ VLL + +  L   P  + +D TFG GG+SR   +       +IA+DRDP A++  
Sbjct: 5   AEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIAEA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +       +F +    FS +  Y+ ++     VDG + DLGVSS Q+D  +RGFSF K 
Sbjct: 65  AKI---QDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G SA++ + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T+
Sbjct: 122 GPLDMRMDPTSGQSAAEWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTR 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I + V  SK    H ATRSFQA+RI++N+E++E+   L  A + L   G L V+S
Sbjct: 182 QLAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQVLAPEGRLSVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK F             +  + A  A  + +    K + P++ +V  N RSR
Sbjct: 241 FHSLEDRLVKHFIRKHEKGPEVPHGIPLTEAQLAGGRKLKSVGKALKPSEHEVNENSRSR 300

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 301 SSVLRVAQRLAE 312


>gi|329667562|gb|AEB93510.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii DPC
           6026]
          Length = 322

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 170/321 (52%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R      +   VI  D+
Sbjct: 1   MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60

Query: 67  DPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++         G+DG+ +DLGVSS Q
Sbjct: 61  DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S    A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +    + +  HPA +SFQA+R+ VNNE+  L + L  A
Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVKIPRGMPMVPADSKPTLRLISRKPIMA 300

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321


>gi|269838022|ref|YP_003320250.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM
           20745]
 gi|269787285|gb|ACZ39428.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/305 (41%), Positives = 181/305 (59%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L + + LL   PG   +DATFG GG++R+  +       V+ALD DP AV+  + 
Sbjct: 20  HQPVMLAESLNLLQVRPGGRYIDATFGGGGHTRAILEASSPDGRVLALDADPAAVARAEA 79

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   + ++    F+Q+           VDGV+ DLG SS QID   RGFSFQ+ GPL
Sbjct: 80  LAEEVGPRLTVRHGNFAQIARLARAAGFDAVDGVLMDLGFSSFQIDEPSRGFSFQRPGPL 139

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR   + G SA ++VN  +  DL+RI+   GEE +A RIA AIV  R+  P +TT  L+
Sbjct: 140 DMRFDPTTGSSAREIVNTWDEADLSRIIFEYGEEPKARRIARAIVAARRERPIETTDHLA 199

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++++ V   +   IHPATR+FQALRI VN E+E L QGL  A   L  GG L+V++FHS
Sbjct: 200 AIVEQAVGGRRGRAIHPATRTFQALRIAVNRELEVLEQGLAGALDVLAPGGRLVVIAFHS 259

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK++F + +   +      +    H A  + +T K + PT+ + A N RSRSA+L
Sbjct: 260 LEDRIVKQYFRTEARDCICPPETPVCVCGHRARLRVVTPKPLRPTEAEQALNPRSRSARL 319

Query: 312 RAGMR 316
           RA  R
Sbjct: 320 RAAER 324


>gi|323144058|ref|ZP_08078702.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066]
 gi|322416171|gb|EFY06861.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066]
          Length = 316

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 173/311 (55%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL + +A LN  P  + +DATFG GG+SR   K       + ALDRD  A+   + 
Sbjct: 5   HIPVLLNETLAGLNINPDGIYVDATFGRGGHSREILKRLNKNGRLYALDRDLSAIEAAKS 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 E+FS+  A FSQL++   D      V+G++ D+GVSS Q+D   RGFSF K GP
Sbjct: 65  IA---DERFSIVHARFSQLKEVCEDFGILGKVNGILMDIGVSSPQLDDASRGFSFDKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  I A+ +VN  + KDL  I    GEE+ A ++A+AIV++R+  PF TT  L
Sbjct: 122 LDMRMDQSAKIDAALIVNTYDAKDLAYIFKTYGEERFAGKVANAIVRQREKTPFTTTLAL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI  ++   K    H ATR FQALRI VN+E+EEL   L  +   L   G L V+SFH
Sbjct: 182 ADLISASI-PGKPGPKHKATRCFQALRIAVNSELEELKSALDGSIDVLDKDGRLCVISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS----ITK--KVVVPTQEDVAFNRR 305
           SLEDR+VK F    S      R +  ++   A  +     + K    +  T  +++ N R
Sbjct: 241 SLEDRIVKTFIRENSEGPKLPRGLPITDEELAELKLKSCTLQKISGAIKATDAEISQNPR 300

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 301 SRSAVLRVAAR 311


>gi|291525276|emb|CBK90863.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629]
          Length = 314

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 164/313 (52%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VL ++ I  LN  P  + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MEFKHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ- 128
              E + ++ ++ ++ ++ +S +++ +     + VDG++ DLGVSS Q+D   RGF+++ 
Sbjct: 61  AAGERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRS 120

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM      +A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     T
Sbjct: 121 EDAPLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITT 180

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+ +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + 
Sbjct: 181 TGELNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDSLDDMIDLLNPGGRIC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK  F                   + +    IT+K ++P+++++  N R
Sbjct: 241 IITFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSR 300

Query: 306 SRSAKLRAGMRTV 318
           S+SAKLR   +  
Sbjct: 301 SKSAKLRVFEKND 313


>gi|82775489|ref|YP_401836.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae Sd197]
 gi|309787242|ref|ZP_07681854.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617]
 gi|88909218|sp|Q32K10|RSMH_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|81239637|gb|ABB60347.1| putative apolipoprotein [Shigella dysenteriae Sd197]
 gi|308924820|gb|EFP70315.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 175/314 (55%), Gaps = 15/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTCGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTV 318
           R+RS+ LR   RT 
Sbjct: 299 RARSSVLRIAERTN 312


>gi|148265993|ref|YP_001232699.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4]
 gi|146399493|gb|ABQ28126.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4]
          Length = 303

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 173/303 (57%), Gaps = 9/303 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           +  +VI  L P  G + +D T G GG++R   +       +I  DRD  A++   E +  
Sbjct: 1   MAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAERLAP 60

Query: 81  YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y E+  L Q  F+ L + + +     +DG + D+GVSS Q+D   RGFSFQ   PLDMRM
Sbjct: 61  YGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              SG SASD+VN  +  DL RI+   GEE+ A RIA  IVKRR+ +P +TT  L  +I+
Sbjct: 121 DVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLVDVIK 180

Query: 197 KTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             V     + R+HPATR+FQALRI VN+E+  L + L +  + LK GG  +V+SFHSLED
Sbjct: 181 GAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK  F S +      + +         + + IT K V+  + +V+ N RSRSA+LRA 
Sbjct: 241 RIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSARLRAA 300

Query: 315 MRT 317
            + 
Sbjct: 301 EKI 303


>gi|227889751|ref|ZP_04007556.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227849615|gb|EEJ59701.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 170/321 (52%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R      +   VI  D+
Sbjct: 1   MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60

Query: 67  DPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++         G+DG+ +DLGVSS Q
Sbjct: 61  DEYAISMAKESFAKELQVGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S    A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +    + +  HPA +SFQA+R+ VNNE+  L + L  A
Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321


>gi|229013103|ref|ZP_04170268.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides DSM 2048]
 gi|229134728|ref|ZP_04263537.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST196]
 gi|228648774|gb|EEL04800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST196]
 gi|228748357|gb|EEL98217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides DSM 2048]
          Length = 302

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 9/300 (3%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
           ++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E    Y 
Sbjct: 2   KETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSYG 61

Query: 83  EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           EQF   ++ F  L + + +     VDG++FDLGVSS Q+D  +RGFS+    PLDMRM  
Sbjct: 62  EQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMDQ 121

Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
              ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L  LI++ 
Sbjct: 122 DAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELVELIKEG 181

Query: 199 VYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           +    +    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FHSLEDR+
Sbjct: 182 IPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDRI 241

Query: 258 VKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            K  F   S          I  +      + IT+K ++P+  ++  N R+RSAKLR   +
Sbjct: 242 CKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAEK 301


>gi|24111527|ref|NP_706037.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301]
 gi|30061649|ref|NP_835820.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T]
 gi|42559469|sp|Q83SN7|RSMH_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24050285|gb|AAN41744.1| putative apolipoprotein [Shigella flexneri 2a str. 301]
 gi|30039891|gb|AAP15625.1| putative apolipoprotein [Shigella flexneri 2a str. 2457T]
 gi|281599444|gb|ADA72428.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Shigella
           flexneri 2002017]
 gi|313646535|gb|EFS10996.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T]
 gi|332762256|gb|EGJ92523.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2747-71]
 gi|332762643|gb|EGJ92908.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 4343-70]
 gi|332764928|gb|EGJ95156.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-671]
 gi|333009116|gb|EGK28572.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-218]
 gi|333022474|gb|EGK41712.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-304]
          Length = 313

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|261405657|ref|YP_003241898.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10]
 gi|261282120|gb|ACX64091.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10]
          Length = 317

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 170/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL ++    L   P  + +D T G  G+S            +IALD+D +A++ 
Sbjct: 1   MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E M+ Y ++ SL +  F  L++               VDG++FDLGVSS Q D G+RG
Sbjct: 61  AREAMKPYADRISLVKTNFRDLEEVLRREVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR  +
Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P QTT +L  +I++ +  + +    HPA RSFQA RI VN+E+      L  A + L  G
Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHSLEDR+ K+ F S   K                   + + +K ++P+ E++
Sbjct: 241 GRISVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 ESNPRARSAKLRIAEK 316


>gi|170768458|ref|ZP_02902911.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627]
 gi|170122562|gb|EDS91493.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627]
          Length = 313

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLSEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L V
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|330828037|ref|YP_004390989.1| ribosomal RNA small subunit methyltransferase H [Aeromonas veronii
           B565]
 gi|328803173|gb|AEB48372.1| Ribosomal RNA small subunit methyltransferase H [Aeromonas veronii
           B565]
          Length = 312

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 14/312 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
            +H+ VLL + +  L   P  V +D TFG GG+SR   +       +IA+DRDP A++  
Sbjct: 5   AEHITVLLHEAVEGLAIKPDGVYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIAEA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +       +F +    FS +  Y+ ++     VDG + DLGVSS Q+D  +RGFSF K 
Sbjct: 65  AKI---QDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G SA++ + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T+
Sbjct: 122 GPLDMRMDPTSGQSAAEWLAKADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTR 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I + V  SK    H ATRSFQA+RI++N+E++E+   L  A + L   G L V+S
Sbjct: 182 QLAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALEVLAPHGRLSVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK F             +  + A  A  + +    K + P+  +V+ N RSR
Sbjct: 241 FHSLEDRLVKHFIRKHEKGPEVPYGIPLTEAQLAGGRKLKSVGKALKPSDHEVSENSRSR 300

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 301 SSVLRVAERLAE 312


>gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella
           thessalonicensis L13]
          Length = 314

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 131/304 (43%), Positives = 187/304 (61%), Gaps = 7/304 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H+PVLL+++   L    G + +DATFG GGY+R+  +     VIA+DRDP A+   ++ 
Sbjct: 1   MHIPVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              Y ++  +FQ  FS L   V    V+    VVFD GVSS QID  +RGFSF+  GPLD
Sbjct: 61  KAQYPDRLFVFQGVFSDLPSIVEKVPVEKVDGVVFDFGVSSYQIDTPERGFSFRFEGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D+VN  + +DL  ++   GEE ++ RIA AIV+ R+  P QTT +L++L
Sbjct: 121 MRMSGEGESAADIVNTYSEEDLANVIYTYGEEYRSRRIARAIVELRKVKPIQTTLELANL 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V   + +  HPAT +FQALRI VNNE+ E+ +GL+ AE  L   G L+ V+FHSLE
Sbjct: 181 IKSRV-GGRPDAQHPATLTFQALRIKVNNELIEIERGLKFAEDFLSTDGRLVAVTFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK F   +S +      ++P      P  F  +  K + P++ +++ N RSRSA+LR
Sbjct: 240 DRVVKSFLRQKSVRKQKQSRLLPGEKVPSPPSFHDLYPKGIAPSETEISANPRSRSARLR 299

Query: 313 AGMR 316
           A +R
Sbjct: 300 AAVR 303


>gi|332799086|ref|YP_004460585.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter
           sp. Re1]
 gi|332696821|gb|AEE91278.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter
           sp. Re1]
          Length = 320

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 171/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVP+LL K I +L+P PG V +DAT G GG+ R   K        I +D+D  A+S  +E
Sbjct: 5   HVPILLHKTIEMLDPKPGGVYVDATLGGGGHFRELLKKAEYEGTFIGIDQDEVAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               +     L    F  L+  + +     +DG++FDLGVSS Q D G RGFS+ K  PL
Sbjct: 65  NFSKFSYDIRLIHDNFYNLKKIIKENKLSEIDGILFDLGVSSYQFDEGSRGFSYNKDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN+ +  +L +I+   GEE  A RIA  I + R      TT +L 
Sbjct: 125 DMRMDQRKTLSAKDVVNKMSRDELKQIISEYGEESWAGRIADFICEARSRKEITTTGELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQALRI+VN E+E L   ++ A + LK GG + V++FH
Sbjct: 185 EIIKNAIPARARRKGGHPARKTFQALRIYVNEELEILDSSIKDAVELLKPGGRICVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +  +  +I +  H  V + +T K + P+QE++  N R+RSAK
Sbjct: 245 SLEDRIVKNAFKLLATACICPKEALICTCNHTKVLKVLTSKPIYPSQEEIESNPRARSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRVAQK 310


>gi|331701055|ref|YP_004398014.1| ribosomal RNA small subunit methyltransferase H [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128398|gb|AEB72951.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           buchneri NRRL B-30929]
          Length = 315

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 161/314 (51%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           +   HV VLL + +  LN  P    +DAT G GG++    +     ++ + D+D  A++ 
Sbjct: 2   SEFKHVTVLLNEAVKGLNINPDGTYVDATLGGGGHTTKILEQLTNGHLYSFDQDEEAIAY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ + +Y    + +L    F  L+  + +     +DG+V+DLGVSS Q D   RGFS++
Sbjct: 62  NRQHLAEYIEAGKLTLIHDNFRHLKSALQNVDVSGIDGIVYDLGVSSPQFDEAGRGFSYR 121

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM       A  +VN+   + L RI    GEEK A  IA  I   R+  P  T
Sbjct: 122 FDARLDMRMDQDNPIDAWKIVNEWPYEKLVRIFYRYGEEKFAKSIARRIETVRREHPIDT 181

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I++ +  + + +  HPA + FQA+RI VN+E+  L   L  A   L   G + 
Sbjct: 182 TNDLVEVIKEGIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQALDLLNVNGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F SLEDRLVK  F  + S   +     I        F+SIT+K +VPT+ ++  N R
Sbjct: 242 VITFQSLEDRLVKTMFKEKTSLPELPPNLPIIPEGIKPKFKSITRKPIVPTEAELEENHR 301

Query: 306 SRSAKLRAGMRTVE 319
           S SAKLR   R   
Sbjct: 302 SHSAKLRIIERIKN 315


>gi|160935714|ref|ZP_02083089.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441458|gb|EDP19168.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC
           BAA-613]
          Length = 315

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 173/312 (55%), Gaps = 8/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +  +   H  VLL + +  LN  PG + +D T G GG++   CK      +I +D+D  A
Sbjct: 1   MEESTFVHKSVLLYETVGSLNIKPGGLYVDGTLGGGGHAYEVCKRLGSGKLIGIDQDADA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    + +  ++++ ++ ++ ++ +++ + +   +GVDG+  DLGVSS Q+D   RGF++
Sbjct: 61  IEAAGKRLLPFQDKVTIVRSNYANIKEVLKELEIEGVDGIYLDLGVSSYQLDTASRGFTY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM      +A+ ++N  +  +L RI+   GE+  A  IA  IV+ R   P +
Sbjct: 121 REDAPLDMRMDQRNDVTAAHIINTYSEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +I+  +    +    HPA R+FQA+RI  N+E+E L Q + +    L  GG L
Sbjct: 181 TTGELAEIIKGAIPARVRATGGHPAKRTFQAIRIECNHELEVLEQSIDTMIDLLNPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F       +             +  + +++K ++P++E++  N 
Sbjct: 241 SIITFHSLEDRIVKSRFRLNENPCICPHDFPVCVCGRKSKGKVVSRKPILPSEEELEENS 300

Query: 305 RSRSAKLRAGMR 316
           RS+SAKLR   R
Sbjct: 301 RSKSAKLRVFER 312


>gi|15799766|ref|NP_285778.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933]
 gi|15829340|ref|NP_308113.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128075|ref|NP_414624.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82542686|ref|YP_406633.1| S-adenosyl-methyltransferase MraW [Shigella boydii Sb227]
 gi|89106965|ref|AP_000745.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. W3110]
 gi|91209146|ref|YP_539132.1| S-adenosyl-methyltransferase MraW [Escherichia coli UTI89]
 gi|110640295|ref|YP_668023.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536]
 gi|157154775|ref|YP_001461252.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A]
 gi|157159553|ref|YP_001456871.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS]
 gi|168751408|ref|ZP_02776430.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755690|ref|ZP_02780697.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764039|ref|ZP_02789046.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771306|ref|ZP_02796313.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776926|ref|ZP_02801933.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781967|ref|ZP_02806974.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789609|ref|ZP_02814616.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC869]
 gi|168801509|ref|ZP_02826516.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC508]
 gi|170021562|ref|YP_001726516.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739]
 gi|170079721|ref|YP_001729041.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. DH10B]
 gi|170679711|ref|YP_001742204.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5]
 gi|187731396|ref|YP_001878892.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94]
 gi|188494231|ref|ZP_03001501.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638]
 gi|191167757|ref|ZP_03029564.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A]
 gi|191174644|ref|ZP_03036126.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11]
 gi|193065897|ref|ZP_03046958.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22]
 gi|193070829|ref|ZP_03051762.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019]
 gi|194429383|ref|ZP_03061908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171]
 gi|194439418|ref|ZP_03071495.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1]
 gi|195939298|ref|ZP_03084680.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807673|ref|ZP_03250010.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812612|ref|ZP_03253941.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821818|ref|ZP_03262138.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400403|ref|YP_002268690.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917275|ref|YP_002291359.1| S-adenosyl-methyltransferase MraW [Escherichia coli SE11]
 gi|217324681|ref|ZP_03440765.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547539|ref|YP_002381330.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ATCC
           35469]
 gi|218552665|ref|YP_002385578.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI1]
 gi|218557022|ref|YP_002389935.1| S-adenosyl-methyltransferase MraW [Escherichia coli S88]
 gi|218693551|ref|YP_002401218.1| S-adenosyl-methyltransferase MraW [Escherichia coli 55989]
 gi|218703342|ref|YP_002410861.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMN026]
 gi|237704231|ref|ZP_04534712.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA]
 gi|238899483|ref|YP_002925279.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli BW2952]
 gi|253774888|ref|YP_003037719.1| S-adenosyl-methyltransferase MraW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037497|ref|ZP_04871574.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43]
 gi|254160204|ref|YP_003043312.1| S-adenosyl-methyltransferase MraW [Escherichia coli B str. REL606]
 gi|254791219|ref|YP_003076056.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020080|ref|ZP_05433945.1| S-adenosyl-methyltransferase MraW [Shigella sp. D9]
 gi|256025396|ref|ZP_05439261.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 4_1_40B]
 gi|260842318|ref|YP_003220096.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260853295|ref|YP_003227186.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260866235|ref|YP_003232637.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261226839|ref|ZP_05941120.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255243|ref|ZP_05947776.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291280907|ref|YP_003497725.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli O55:H7 str. CB9615]
 gi|293403154|ref|ZP_06647251.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1412]
 gi|293408175|ref|ZP_06652015.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354]
 gi|293417958|ref|ZP_06660580.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185]
 gi|293476742|ref|ZP_06665150.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088]
 gi|297516902|ref|ZP_06935288.1| S-adenosyl-methyltransferase MraW [Escherichia coli OP50]
 gi|298378684|ref|ZP_06988568.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1302]
 gi|300816120|ref|ZP_07096343.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1]
 gi|300821913|ref|ZP_07102057.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7]
 gi|300900887|ref|ZP_07119024.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1]
 gi|300905491|ref|ZP_07123255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1]
 gi|300919637|ref|ZP_07136128.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1]
 gi|300923135|ref|ZP_07139195.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1]
 gi|300931791|ref|ZP_07147091.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1]
 gi|300938477|ref|ZP_07153217.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1]
 gi|300949900|ref|ZP_07163863.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1]
 gi|300955948|ref|ZP_07168281.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1]
 gi|300984504|ref|ZP_07176996.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1]
 gi|301028563|ref|ZP_07191794.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1]
 gi|301303818|ref|ZP_07209938.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1]
 gi|301330140|ref|ZP_07222807.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1]
 gi|301646394|ref|ZP_07246276.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1]
 gi|306815320|ref|ZP_07449469.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101]
 gi|307136683|ref|ZP_07496039.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|307311467|ref|ZP_07591109.1| S-adenosyl-methyltransferase MraW [Escherichia coli W]
 gi|309796072|ref|ZP_07690484.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7]
 gi|312970176|ref|ZP_07784358.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70]
 gi|331661128|ref|ZP_08362060.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206]
 gi|331661456|ref|ZP_08362380.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143]
 gi|331666319|ref|ZP_08367200.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271]
 gi|331681467|ref|ZP_08382104.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299]
 gi|332281230|ref|ZP_08393643.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Shigella sp. D9]
 gi|42559423|sp|P60391|RSMH_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560200|sp|P60390|RSMH_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909217|sp|Q326F3|RSMH_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122425027|sp|Q1RGB3|RSMH_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122958600|sp|Q0TLQ7|RSMH_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826583|sp|B2U287|RSMH_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446391|sp|A7ZHH3|RSMH_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446421|sp|B7LFV2|RSMH_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446425|sp|B5YZB8|RSMH_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446445|sp|B7M125|RSMH_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446449|sp|C5W331|RSMH_ECOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446457|sp|C6UM45|RSMH_ECOBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446461|sp|C4ZQ04|RSMH_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446465|sp|B1XC59|RSMH_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446468|sp|A7ZW34|RSMH_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446964|sp|B1IR96|RSMH_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446972|sp|B7N7V5|RSMH_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446978|sp|B6HZ59|RSMH_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446983|sp|B1LG19|RSMH_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447462|sp|B7MAK5|RSMH_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447500|sp|B7LWH0|RSMH_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447897|sp|A1A7C7|RSMH_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12512785|gb|AAG54386.1|AE005185_3 putative apolipoprotein [Escherichia coli O157:H7 str. EDL933]
 gi|40850|emb|CAA38859.1| unnamed protein product [Escherichia coli]
 gi|42318|emb|CAA36283.1| unnamed protein product [Escherichia coli str. K-12 substr. W3110]
 gi|1786270|gb|AAC73193.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13359542|dbj|BAB33509.1| putative apolipoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|21321963|dbj|BAB96650.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K12 substr. W3110]
 gi|81244097|gb|ABB64805.1| putative apolipoprotein [Shigella boydii Sb227]
 gi|91070720|gb|ABE05601.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli
           UTI89]
 gi|110341887|gb|ABG68124.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536]
 gi|157065233|gb|ABV04488.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS]
 gi|157076805|gb|ABV16513.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A]
 gi|169756490|gb|ACA79189.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739]
 gi|169887556|gb|ACB01263.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. DH10B]
 gi|170517429|gb|ACB15607.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5]
 gi|187428388|gb|ACD07662.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94]
 gi|187767771|gb|EDU31615.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014531|gb|EDU52653.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489430|gb|EDU64533.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638]
 gi|189000502|gb|EDU69488.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356993|gb|EDU75412.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359899|gb|EDU78318.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365898|gb|EDU84314.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370778|gb|EDU89194.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC869]
 gi|189376342|gb|EDU94758.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC508]
 gi|190902183|gb|EDV61925.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A]
 gi|190905079|gb|EDV64736.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11]
 gi|192926484|gb|EDV81117.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22]
 gi|192955859|gb|EDV86329.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019]
 gi|194412603|gb|EDX28900.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171]
 gi|194421677|gb|EDX37687.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1]
 gi|208727474|gb|EDZ77075.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733889|gb|EDZ82576.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741941|gb|EDZ89623.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161803|gb|ACI39236.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746626|gb|ACI71620.1| putative apolipoprotein [Escherichia coli]
 gi|209746628|gb|ACI71621.1| putative apolipoprotein [Escherichia coli]
 gi|209746630|gb|ACI71622.1| putative apolipoprotein [Escherichia coli]
 gi|209746632|gb|ACI71623.1| putative apolipoprotein [Escherichia coli]
 gi|209910534|dbj|BAG75608.1| S-adenosyl-methyltransferase [Escherichia coli SE11]
 gi|217320902|gb|EEC29326.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350283|emb|CAU95966.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli 55989]
 gi|218355080|emb|CAQ87687.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia fergusonii ATCC 35469]
 gi|218359433|emb|CAQ96971.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli IAI1]
 gi|218363791|emb|CAR01451.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli S88]
 gi|218430439|emb|CAR11305.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli UMN026]
 gi|226840603|gb|EEH72605.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43]
 gi|226902143|gb|EEH88402.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA]
 gi|238863507|gb|ACR65505.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli BW2952]
 gi|242375918|emb|CAQ30599.1| 16S rRNA m[4]C1402 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253325932|gb|ACT30534.1| S-adenosyl-methyltransferase MraW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972105|gb|ACT37776.1| S-adenosyl-methyltransferase [Escherichia coli B str. REL606]
 gi|253976314|gb|ACT41984.1| S-adenosyl-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254590619|gb|ACT69980.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli O157:H7 str. TW14359]
 gi|257751944|dbj|BAI23446.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257757465|dbj|BAI28962.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257762591|dbj|BAI34086.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260450711|gb|ACX41133.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1]
 gi|281177302|dbj|BAI53632.1| S-adenosyl-methyltransferase [Escherichia coli SE15]
 gi|290760780|gb|ADD54741.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli O55:H7 str. CB9615]
 gi|291321195|gb|EFE60637.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088]
 gi|291430069|gb|EFF03083.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1412]
 gi|291430676|gb|EFF03674.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185]
 gi|291472426|gb|EFF14908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354]
 gi|294492092|gb|ADE90848.1| S-adenosyl-methyltransferase MraW [Escherichia coli IHE3034]
 gi|298281018|gb|EFI22519.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1302]
 gi|299878407|gb|EFI86618.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1]
 gi|300306673|gb|EFJ61193.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1]
 gi|300317168|gb|EFJ66952.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1]
 gi|300355651|gb|EFJ71521.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1]
 gi|300402641|gb|EFJ86179.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1]
 gi|300413277|gb|EFJ96587.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1]
 gi|300420590|gb|EFK03901.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1]
 gi|300450732|gb|EFK14352.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1]
 gi|300456546|gb|EFK20039.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1]
 gi|300460451|gb|EFK23944.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1]
 gi|300525513|gb|EFK46582.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7]
 gi|300531327|gb|EFK52389.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1]
 gi|300840945|gb|EFK68705.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1]
 gi|300843845|gb|EFK71605.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1]
 gi|301075364|gb|EFK90170.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1]
 gi|305850982|gb|EFM51437.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101]
 gi|306908446|gb|EFN38944.1| S-adenosyl-methyltransferase MraW [Escherichia coli W]
 gi|307629656|gb|ADN73960.1| S-adenosyl-methyltransferase MraW [Escherichia coli UM146]
 gi|308120314|gb|EFO57576.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7]
 gi|309700293|emb|CBI99581.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli ETEC H10407]
 gi|310337674|gb|EFQ02785.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70]
 gi|315059305|gb|ADT73632.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli W]
 gi|315134776|dbj|BAJ41935.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1]
 gi|315253156|gb|EFU33124.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 85-1]
 gi|315285172|gb|EFU44617.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 110-3]
 gi|315300017|gb|EFU59255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 16-3]
 gi|315616139|gb|EFU96758.1| S-adenosyl-methyltransferase MraW [Escherichia coli 3431]
 gi|320172827|gb|EFW48059.1| rRNA small subunit methyltransferase H [Shigella dysenteriae CDC
           74-1112]
 gi|320183631|gb|EFW58474.1| rRNA small subunit methyltransferase H [Shigella flexneri CDC
           796-83]
 gi|320190395|gb|EFW65045.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. EC1212]
 gi|320197467|gb|EFW72081.1| rRNA small subunit methyltransferase H [Escherichia coli WV_060327]
 gi|320200399|gb|EFW74985.1| rRNA small subunit methyltransferase H [Escherichia coli EC4100B]
 gi|320642121|gb|EFX11472.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str.
           G5101]
 gi|320658207|gb|EFX25936.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663516|gb|EFX30800.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668828|gb|EFX35623.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323157851|gb|EFZ43954.1| S-adenosyl-methyltransferase MraW [Escherichia coli EPECa14]
 gi|323160120|gb|EFZ46081.1| S-adenosyl-methyltransferase MraW [Escherichia coli E128010]
 gi|323176390|gb|EFZ61982.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1180]
 gi|323181779|gb|EFZ67192.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1357]
 gi|323190236|gb|EFZ75512.1| S-adenosyl-methyltransferase MraW [Escherichia coli RN587/1]
 gi|323380137|gb|ADX52405.1| S-adenosyl-methyltransferase MraW [Escherichia coli KO11]
 gi|323935134|gb|EGB31501.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1520]
 gi|323939878|gb|EGB36078.1| S-adenosyl-methyltransferase MraW [Escherichia coli E482]
 gi|323945711|gb|EGB41759.1| S-adenosyl-methyltransferase MraW [Escherichia coli H120]
 gi|323950922|gb|EGB46799.1| S-adenosyl-methyltransferase MraW [Escherichia coli H252]
 gi|323955280|gb|EGB51053.1| S-adenosyl-methyltransferase MraW [Escherichia coli H263]
 gi|323960028|gb|EGB55674.1| S-adenosyl-methyltransferase MraW [Escherichia coli H489]
 gi|323964822|gb|EGB60289.1| S-adenosyl-methyltransferase MraW [Escherichia coli M863]
 gi|323970754|gb|EGB66008.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA007]
 gi|323975754|gb|EGB70850.1| S-adenosyl-methyltransferase MraW [Escherichia coli TW10509]
 gi|324012284|gb|EGB81503.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 60-1]
 gi|324017757|gb|EGB86976.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 117-3]
 gi|324112505|gb|EGC06482.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii B253]
 gi|324118432|gb|EGC12326.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1167]
 gi|325496018|gb|EGC93877.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ECD227]
 gi|326345198|gb|EGD68941.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. 1125]
 gi|326346948|gb|EGD70682.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. 1044]
 gi|327255060|gb|EGE66663.1| S-adenosyl-methyltransferase MraW [Escherichia coli STEC_7v]
 gi|330909929|gb|EGH38439.1| rRNA small subunit methyltransferase H [Escherichia coli AA86]
 gi|331052170|gb|EGI24209.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206]
 gi|331061371|gb|EGI33334.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143]
 gi|331066530|gb|EGI38407.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271]
 gi|331081688|gb|EGI52849.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299]
 gi|332095373|gb|EGJ00396.1| S-adenosyl-methyltransferase MraW [Shigella boydii 5216-82]
 gi|332098926|gb|EGJ03877.1| S-adenosyl-methyltransferase MraW [Shigella boydii 3594-74]
 gi|332103582|gb|EGJ06928.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Shigella sp. D9]
 gi|332341414|gb|AEE54748.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMNK88]
 gi|333010578|gb|EGK30011.1| S-adenosyl-methyltransferase MraW [Shigella flexneri VA-6]
 gi|333011470|gb|EGK30884.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-272]
 gi|333021712|gb|EGK40961.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-227]
          Length = 313

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|218687959|ref|YP_002396171.1| S-adenosyl-methyltransferase MraW [Escherichia coli ED1a]
 gi|263446439|sp|B7MNU1|RSMH_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218425523|emb|CAR06306.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli ED1a]
          Length = 313

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P    +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGTYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|300768848|ref|ZP_07078742.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493581|gb|EFK28755.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 319

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 162/312 (51%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +    G ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLGGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y  + Q +  ++ F+ L+  +  +    VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S   +A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK  F   S        +          ++ +++K VVP+  ++  NR
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLRA  R
Sbjct: 302 RARSAKLRAIER 313


>gi|157692188|ref|YP_001486650.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus SAFR-032]
 gi|263446003|sp|A8FCX3|RSMH_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157680946|gb|ABV62090.1| S-adenosyl-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 310

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN       +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +   K      ++ F  L++ + ++    VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AREKLAGSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   SA  VVN+   +DL RI    GEEK + +IA  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E++   + L  A + L   G + V+
Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S        +           + IT+K +V +++++  N R+R
Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|157826956|ref|YP_001496020.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389]
 gi|167011836|sp|A8GVV6|RSMH_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157802260|gb|ABV78983.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389]
          Length = 305

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/306 (40%), Positives = 181/306 (59%), Gaps = 5/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74
               H+PV+L +++  L P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MQQPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E   +YK++F   +  F      +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + +N A  KDL  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   +   +  +I PAT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VHSCI-GFRKGKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A       +         + IT K  +P+ ++++ N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKL 299

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 300 RAAKKI 305


>gi|117622368|ref|YP_851281.1| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1]
 gi|331640535|ref|ZP_08341683.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|331645192|ref|ZP_08346303.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605]
 gi|331650979|ref|ZP_08352007.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718]
 gi|331671601|ref|ZP_08372399.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280]
 gi|331680655|ref|ZP_08381314.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591]
 gi|115511492|gb|ABI99566.1| S-adenosyl-methyltransferase [Escherichia coli APEC O1]
 gi|331040281|gb|EGI12488.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|331045949|gb|EGI18068.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605]
 gi|331051433|gb|EGI23482.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718]
 gi|331071446|gb|EGI42803.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280]
 gi|331072118|gb|EGI43454.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591]
          Length = 346

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 36  ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 95

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 96  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 152

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 153 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 212

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 213 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 271

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 272 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 331

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 332 RARSSVLRIAERTNA 346


>gi|209746624|gb|ACI71619.1| putative apolipoprotein [Escherichia coli]
 gi|320647484|gb|EFX16279.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str.
           493-89]
 gi|320652818|gb|EFX21056.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str.
           H 2687]
          Length = 313

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNRKQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str.
           Houston-1]
 gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1]
          Length = 346

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G+ VIALDRDP A+  GQ  + 
Sbjct: 25  HIPVLLQPVLAGLIPLVGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAIREGQSLVD 84

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 85  EFFPRLRLVQGNFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN+    +L RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 144 TGFTAADVVNRLKSDELARIFKILGEERYARRIARMIEKRRCVQPFLRTGDLAHAIEVLV 203

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                 RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK
Sbjct: 204 GRKSGERIHPATRVFQALRIYVNDEIGELARGLFAAERVLKPGGRLGVVSFHSLEDRMVK 263

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF++RSG+ +  R++      PA F  + K  +   +E++  N RSRSA+LR G+RT  
Sbjct: 264 RFFSARSGESVRSRYLPEIEMAPATFFPLFKGGITANKEELERNPRSRSARLRIGVRTEA 323

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
             +  D  + L  L  ++ F G
Sbjct: 324 ECLFAD--MKLFGLAKIASFEG 343


>gi|238924611|ref|YP_002938127.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656]
 gi|263433305|sp|C4ZD30|RSMH2_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|238876286|gb|ACR75993.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656]
          Length = 314

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 164/313 (52%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VL ++ I  LN  P  + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MEFKHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ- 128
              E + ++ ++ ++ ++ +S +++ +     + VDG++ DLGVSS Q+D   RGF+++ 
Sbjct: 61  AAGERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRS 120

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM      +A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     T
Sbjct: 121 EDAPLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITT 180

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+ +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + 
Sbjct: 181 TGELNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRIC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK  F                   + +    IT+K ++P+++++  N R
Sbjct: 241 IITFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSR 300

Query: 306 SRSAKLRAGMRTV 318
           S+SAKLR   +  
Sbjct: 301 SKSAKLRVFEKND 313


>gi|42518892|ref|NP_964822.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533]
 gi|41583178|gb|AAS08788.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533]
          Length = 322

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 170/321 (52%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R      +   VI  D+
Sbjct: 1   MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60

Query: 67  DPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++         G+DG+ +DLGVSS Q
Sbjct: 61  DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S    A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +    + +  HPA +SFQA+R+ VN+E+  L + L  A
Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321


>gi|332686267|ref|YP_004456041.1| rRNA small subunit methyltransferase H [Melissococcus plutonius
           ATCC 35311]
 gi|332370276|dbj|BAK21232.1| rRNA small subunit methyltransferase H [Melissococcus plutonius
           ATCC 35311]
          Length = 316

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 168/313 (53%), Gaps = 11/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL++ I  LN  P  + +D T G GG+S+          ++   D+D  A++
Sbjct: 3   ETFNHQTVLLKETINELNINPNGIYVDCTLGGGGHSQYLLSKLSEKGHLYVFDQDEMALT 62

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
              + +  Y  K+  +  +A F  L++ + +K V   DG+ +DLGVSS Q+D  +RGFS+
Sbjct: 63  AASKRLAPYVEKQMVTFIKANFRLLKEKLFEKHVFQVDGIFYDLGVSSPQLDEAERGFSY 122

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  +   +A ++VN  + ++L ++     EEK + +IA  I + R +   Q
Sbjct: 123 HHDAPLDMRMDQTSSLTAYEIVNHYSYENLVKVFFRYSEEKFSKQIAREIERVRLNQTIQ 182

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+K +    +    HPA R FQA+RI VN+E+  +   L  A + L   G +
Sbjct: 183 TTGELVEIIKKVIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEVSLEQAIELLNKNGRI 242

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK  F S S        +      +  + + ITKK ++P++E+   N 
Sbjct: 243 GVITFHSLEDRIVKNMFKSYSTPKDLPPGLPVVPEEYQPILKVITKKPIIPSEEEQKQNN 302

Query: 305 RSRSAKLRAGMRT 317
           RSRSAKLR   + 
Sbjct: 303 RSRSAKLRIAEKI 315


>gi|91791714|ref|YP_561365.1| S-adenosyl-methyltransferase MraW [Shewanella denitrificans OS217]
 gi|123061331|sp|Q12SD4|RSMH_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91713716|gb|ABE53642.1| methyltransferase [Shewanella denitrificans OS217]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 171/314 (54%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLKETVDGLNIQPDGIYIDGTFGRGGHSRHVLSHLGPNGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLADYVAELGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK +  IA  I   R+  P
Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGAVNVLAPHGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           + ++SFHSLEDR+VK+F    S        +  + A     + +    K + P++ +V  
Sbjct: 237 MSIISFHSLEDRMVKRFMRRHSQGESVPHGLPITEAEINKSKKLKTLGKAMKPSEIEVEQ 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRVAER 310


>gi|121535927|ref|ZP_01667723.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans
           Nor1]
 gi|121305498|gb|EAX46444.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans
           Nor1]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 169/306 (55%), Gaps = 8/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +A L   P  + +D T G GG+S            +I +D+DP A++ GQ 
Sbjct: 8   HKTVLLEESVAALVTNPAGIYVDCTLGGGGHSALIASRLSPEGWLIGIDQDPAAIAAGQA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +  L +  FS L   +     + VDGV+FDLGVSS Q+D   RGFS+ +  PL
Sbjct: 68  RLAGASCRIDLVRDNFSNLSRILTTLGIESVDGVLFDLGVSSHQLDVAQRGFSYMQDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ISA DVVN  +  DLTRI+   GEE+ A RIA  IV+ R +AP  TT  L+
Sbjct: 128 DMRMDPSAPISAYDVVNTYSEDDLTRIIRDYGEERWARRIAQFIVQARMTAPICTTGQLT 187

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +  + + +  HPA R+FQA+RI VNNE+  L     +A + LK GG + +++FH
Sbjct: 188 DIIKRAIPAAARRDGPHPAKRTFQAIRIEVNNELSILQDAFITAVQFLKCGGRICIITFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+ K    S +   +    +     H      I  K + PT E++  N R+RSAKL
Sbjct: 248 SLEDRIAKHTLQSLAKGCVCPPQLPICVCHNKPKLKILGKPITPTAEELDDNHRARSAKL 307

Query: 312 RAGMRT 317
           R   + 
Sbjct: 308 RVAEKV 313


>gi|215485248|ref|YP_002327679.1| S-adenosyl-methyltransferase MraW [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966210|ref|ZP_07780436.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75]
 gi|263447451|sp|B7UID2|RSMH_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|215263320|emb|CAS07635.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli O127:H6 str. E2348/69]
 gi|312289453|gb|EFR17347.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLASGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|291616264|ref|YP_003519006.1| MraW [Pantoea ananatis LMG 20103]
 gi|291151294|gb|ADD75878.1| MraW [Pantoea ananatis LMG 20103]
 gi|327392716|dbj|BAK10138.1| S-adenosyl-methyltransferase MraW [Pantoea ananatis AJ13355]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 122/318 (38%), Positives = 173/318 (54%), Gaps = 19/318 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   QENYKHTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSRLILAQLGASGKLIAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEIK---DPRFSIVHGPFSALADYVAERELVGRIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ + QA   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGHSAAEWLKQAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L 
Sbjct: 179 RTKELAEVI-AAATPIKDKFKHPATRSFQAIRIWINSELEEIDTALKGAVEVLAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDRLVK+F   +S      R +  +              + K  +VP   +V 
Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPRGLPMTEQQLNALGGRQLTLLGK--MVPGDAEVK 295

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RS+ LR   RT  
Sbjct: 296 ENPRARSSVLRIAERTDA 313


>gi|319939729|ref|ZP_08014086.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus anginosus 1_2_62CV]
 gi|319811067|gb|EFW07378.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus anginosus 1_2_62CV]
          Length = 316

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGKNGHLYAFDQDQTAIEHAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +     F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVNQ +  DL RI    GE+K + +IA  I + R+    +TT +
Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKLIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +               + +T+K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPENLQPKMKLVTRKPILPSKEELDNNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAQKV 314


>gi|194434429|ref|ZP_03066691.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012]
 gi|194417345|gb|EDX33452.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012]
 gi|332098043|gb|EGJ03016.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 155-74]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATSVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPVGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|295104209|emb|CBL01753.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           SL3/3]
          Length = 321

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 8/310 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDPF 69
               +H+PVLL + +  L   P    LD T G  G+SR          G  +I+LD+DP 
Sbjct: 11  PASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPD 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           AV   +  +             ++ Q  + +  + ++G + DLGVSS Q+D   RGFS++
Sbjct: 71  AVQTARSRLAGLPATVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYR 130

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++AP  TT
Sbjct: 131 ADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVETRETAPILTT 190

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V
Sbjct: 191 LQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCV 250

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDRLVK  F   S                 A  + IT+K +    +++  NRRS
Sbjct: 251 ITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRS 310

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 311 RSAHLRVLEK 320


>gi|157151600|ref|YP_001449889.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262826721|sp|A8AVS9|RSMH_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157076394|gb|ABV11077.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 316

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  Q  F  L+   + +    +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIEKGMVTFVQDNFRHLKLQLEKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA  VVN  +  DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + I++K ++P+ E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAEELELNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKV 314


>gi|125973496|ref|YP_001037406.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC
           27405]
 gi|263446119|sp|A3DE34|RSMH_CLOTH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125713721|gb|ABN52213.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC
           27405]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 166/313 (53%), Gaps = 11/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PVLLE+ I+ L   P  V +D T G  G+S    K       +I LD+D FA+ 
Sbjct: 1   MEFQHKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIK 60

Query: 73  CGQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127
             QE +   + K +  L    F  +++      ++    ++ DLGVSS Q+D   RGFS+
Sbjct: 61  TSQEKLVQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K  PLDMRM   G  +A  +VN+   +++ RI+   GEEK ASRIA  IV+ R+    +
Sbjct: 121 NKDAPLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIE 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +  S +    HPA R+FQALRI VNNE+  LA+ +    + LK GG  
Sbjct: 181 TTGELVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRF 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F  +    +  +     +         + +K +VP ++++  N 
Sbjct: 241 CIITFHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENP 300

Query: 305 RSRSAKLRAGMRT 317
           R+RSAKLR   + 
Sbjct: 301 RARSAKLRVLEKI 313


>gi|315222117|ref|ZP_07864026.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211]
 gi|315188743|gb|EFU22449.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211]
          Length = 316

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S            + A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGENGRLYAFDQDQTAIEHAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +     F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVNQ +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +               + +T+K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLQPKMKLVTRKPILPSKEELDNNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAQKV 314


>gi|297616973|ref|YP_003702132.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144810|gb|ADI01567.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM
           12680]
          Length = 307

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPVLLE+ +++L   P  V +D T G GG+     +       +I +D+D  A+   +
Sbjct: 1   MHVPVLLEEAVSMLALQPDGVYVDCTVGGGGHLACLVQKLGEKATIIGIDKDAKALEEAR 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + +   +  L    F +LQ  +       + G+V DLGVSS Q+D   RGFS+Q+ GP
Sbjct: 61  KKLANVSSKLILIHGDFRRLQVILKMHGISEIHGIVLDLGVSSFQLDDASRGFSYQEEGP 120

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA  +VN+ + + L  I+  LGEE+ A RIA  IV+ RQ  P  TT +L
Sbjct: 121 LDMRMNTDQQLSAWHLVNEWSEERLALIIRELGEERYARRIAREIVRERQQRPINTTFEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I++ V        HPA R+FQALRI VN E+E L + L  A + L + G + V++FH
Sbjct: 181 VEVIKRAVPAQAKKDKHPARRTFQALRIAVNEELEALEEVLPQAVEVLASEGRIAVITFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK FF   S   +      + +  H A  + +TK+ + PT+ ++A N RSRSAK
Sbjct: 241 SLEDRIVKTFFKRESLGCLCPSDQPVCTCNHRARLKIVTKRPITPTEAELARNPRSRSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRIAEKI 307


>gi|74310701|ref|YP_309120.1| S-adenosyl-methyltransferase MraW [Shigella sonnei Ss046]
 gi|88909219|sp|Q3Z5S7|RSMH_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|73854178|gb|AAZ86885.1| putative apolipoprotein [Shigella sonnei Ss046]
 gi|323165965|gb|EFZ51745.1| S-adenosyl-methyltransferase MraW [Shigella sonnei 53G]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AVATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|242278175|ref|YP_002990304.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM
           2638]
 gi|263446206|sp|C6BYH4|RSMH_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|242121069|gb|ACS78765.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM
           2638]
          Length = 324

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 130/322 (40%), Positives = 179/322 (55%), Gaps = 11/322 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALD 65
           M S        H  VLL +VI  L P PG   LD T G  G+S +  K    G+ +  LD
Sbjct: 1   MESKKLIPEEVHTSVLLNEVIEWLAPKPGGRYLDGTLGMAGHSSAILKIAGEGAELAGLD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGD 122
           RD  A+    E +  + ++   F   FS+ +   D +    VDGVV DLGVSS+ +D  +
Sbjct: 61  RDEQALELAGERLAPFGDRAHRFHLAFSKFEAALDELGWDTVDGVVLDLGVSSLHLDHAE 120

Query: 123 RGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           RGFSF K GPLDMRM  +G    AS +VN+ +  DL RIL + GEE  AS+I  AI+  R
Sbjct: 121 RGFSFIKDGPLDMRMDPAGGMPPASSIVNKGSYSDLNRILKLYGEEPLASKITKAIIAAR 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +     TT  L+S+++K     +   +R HPAT++FQ LRI VN+E+EEL   L    + 
Sbjct: 181 EEEKITTTLQLASIVEKAYPAKRRALSRTHPATKTFQGLRIAVNSELEELKTFLDRIPER 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQ 297
           L  G  + ++SFHSLEDR+VKK F ++S          I +     +   +T+K V+PT+
Sbjct: 241 LSPGARVAIISFHSLEDRIVKKTFKAQSQSCDCPPMQPICTCGKVKLMNVLTRKPVLPTE 300

Query: 298 EDVAFNRRSRSAKLRAGMRTVE 319
           E++  N RSRSAKLR   RT E
Sbjct: 301 EEMKVNTRSRSAKLRVAERTGE 322


>gi|293402027|ref|ZP_06646166.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304419|gb|EFE45669.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 311

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL++ I  L+     + +D T G GG+S    K     ++ A DRD  A+   
Sbjct: 1   MNKHYSVLLQESIEGLHIQHDGIYVDGTLGRGGHSCEILKQIPDGHLYAFDRDASAIEES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131
              +    + F+   + FS L++ +   GV+ +   V DLGVSS Q D  +RGFS++   
Sbjct: 61  TPRLLQVADNFTCIHSPFSHLKEELSAYGVNRIDGLVLDLGVSSPQFDEAERGFSYRFDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   +A ++VN  + +DL +I    GEE  A +IA  I K+R   P +TT +
Sbjct: 121 PLDMRMDQSQALNAYEIVNTWSYQDLVKIFYTYGEETFAKQIARNIEKKRIDKPIRTTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+ ++     N + HPA + FQA+RI VN+E+ EL + L+ A + L   G + V+S
Sbjct: 181 LVDVIKASLPAKVLNKKGHPAKKVFQAIRIAVNDELRELEEVLQEALQMLNPHGRICVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK+ F + S      + +   PS+   A ++ I KK +   +E++  N RS 
Sbjct: 241 FQSLEDRIVKEAFQTASRPKQYDKRIPILPSDMEEAPYKLINKKPITAQEEELMENNRSH 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRIIERI 310


>gi|261338924|ref|ZP_05966782.1| hypothetical protein ENTCAN_05122 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318749|gb|EFC57687.1| S-adenosyl-methyltransferase MraW [Enterobacter cancerogenus ATCC
           35316]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYVDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L V
Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  +    +     Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLSKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRVAERTNA 313


>gi|189423747|ref|YP_001950924.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ]
 gi|263447561|sp|B3E3Z0|RSMH_GEOLS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189420006|gb|ACD94404.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 171/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VL  +V+  L P PG   LD T G GG+S    +       +I +DRDP A++   E
Sbjct: 6   HLSVLAREVMEQLAPRPGGTYLDGTLGGGGHSELILEKIGPDGLLIGIDRDPAALAAASE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG---VSSMQIDCGDRGFSFQKSGPL 133
            +R +   F   Q +F  L + +  +G++ +   L    VSS Q+D  +RGFSF+  GPL
Sbjct: 66  RLRRFGSCFRPLQGSFGDLAELLKQEGINTLDGLLLDLGVSSHQLDTDERGFSFRLDGPL 125

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA+D++   +  +L +I+   GEE+ A +IA  IV+ RQ  P  TT  L+
Sbjct: 126 DMRMDRSCGDSAADLLQDCSAGELEQIIKEFGEERWAKKIALRIVQTRQETPITTTLQLA 185

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L+  T+    +  RIHPATR+FQALRI VN E+E++ QG+R+   ALKAGG + V+SFH
Sbjct: 186 DLVAGTIPRRFHEERIHPATRTFQALRIAVNQELEQVEQGIRAGIAALKAGGRIAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +        M           + +T + V+   E+   N R+RSAK
Sbjct: 246 SLEDRIVKHLFREAATGCTCPPRMPYCVCNKKPQLRILTGRPVIAGPEETDRNPRARSAK 305

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 306 LRAAEK 311


>gi|332142432|ref|YP_004428170.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|263446686|sp|B4RWY7|RSMH_ALTMD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|327552454|gb|AEA99172.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 313

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 13/312 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H+ VLL++ I  L   P  + +DATFG GG+S            +IA DRDP A+
Sbjct: 4   PNEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEKGRLIAFDRDPQAI 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              +    D +  FS+  + F  + + +        +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 64  KAAERFADDKR--FSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSF 121

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA+D +  A  +D+T+++   GEEK   RIAHAIV  R+  P  
Sbjct: 122 LRDGPLDMRMDTSRGQSAADWLASAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKDTPIT 181

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T  L+ +I + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L 
Sbjct: 182 RTAQLAKIIDEAV-PVKDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNR 304
           V+SFHSLEDRLVK+F   +S   +   ++  + A     + +    K + P+++++A N 
Sbjct: 241 VISFHSLEDRLVKRFIKDQSKGKVVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNV 300

Query: 305 RSRSAKLRAGMR 316
           RSRS+ LR   +
Sbjct: 301 RSRSSVLRVAEK 312


>gi|319406014|emb|CBI79645.1| S-adenosyl-methyltransferase [Bartonella sp. AR 15-3]
          Length = 332

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 211/322 (65%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGYSR+    G+ VIALDRDP AV  GQ  + 
Sbjct: 11  HIPVLLQSVLAGLAPLAGAKVIDGTFGAGGYSRALLNAGAEVIALDRDPQAVREGQALVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L QA FSQL D++ +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  QFFPRLRLVQAEFSQL-DHIVEGLVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN   V DL ++   LGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 130 TGFTAADVVNYLKVDDLAQLFKTLGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIEALI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                N IHPATR FQALRI+VNNE+ ELA  L + E+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGNHIHPATRVFQALRIYVNNELNELACALFAVERVLKAGGRLAVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KF ++RSG     R++    + PA F  + K V   TQE++  N R+RSA+LR G+RT E
Sbjct: 250 KFLSARSGHKKGSRYLPEIKSVPATFIPLYKGVKTATQEELQKNPRARSARLRIGVRTQE 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            +I  D  + L  L  ++ F G
Sbjct: 310 AAIAAD--MKLFGLAEIAHFEG 329


>gi|254993138|ref|ZP_05275328.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-064]
          Length = 308

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 168/306 (54%), Gaps = 9/306 (2%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQET 77
             VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   +  
Sbjct: 1   ETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIK 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + DY ++ +  +A F  +++ + ++G+   DG+++DLGVSS Q+D  +RGFS+ +   LD
Sbjct: 61  LADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALD 120

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L  
Sbjct: 121 MRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVD 180

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +    +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FHS
Sbjct: 181 IIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+ K  F   +        +    + +   F+  T+K +VP++E++  N R+RSAKL
Sbjct: 241 LEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKL 300

Query: 312 RAGMRT 317
           R   + 
Sbjct: 301 RVIEKI 306


>gi|110804146|ref|YP_687666.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 5 str. 8401]
 gi|123147294|sp|Q0T8B5|RSMH_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110613694|gb|ABF02361.1| putative apolipoprotein [Shigella flexneri 5 str. 8401]
          Length = 313

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEDEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|196230915|ref|ZP_03129776.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
 gi|196225256|gb|EDY19765.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
          Length = 332

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 177/304 (58%), Gaps = 7/304 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            H  VLL + +  L PAPGKVI+D T G GG++ +    G+ VI  D+DP A++     +
Sbjct: 27  YHESVLLAETVERLAPAPGKVIVDGTLGGGGHTAALLAAGAQVIGFDQDPEALAFAGRKL 86

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++  QF     +F++  + +     + +DG + DLGVSS Q+D  +RGFSF   GPLDM
Sbjct: 87  AEFGGQFRPVHTSFAKAGEALDQLGVEKIDGAMLDLGVSSRQLDAPERGFSFMHDGPLDM 146

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  +  ISA+D+VN      L +I    GEE  A +IA  +V+ R  APF+TT  L+  
Sbjct: 147 RMDPTNLISAADLVNTMAGDQLEKIFRNYGEEPAARKIAAHLVRDRLVAPFRTTLQLAQA 206

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V   +++R HPATR FQALRI VN E+E L  GL    + L  GG L +++FHSLE
Sbjct: 207 VERVV--PRHSRTHPATRVFQALRIAVNRELEALTLGLEQFSQRLAPGGRLAIITFHSLE 264

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK FF  R+   +       +  +P  +F++IT K VV +  +   N RSRSAKLR 
Sbjct: 265 DRIVKVFFKERAAAFIDRPEWPEARPNPIHIFKAITGKPVVASDAEQRANPRSRSAKLRV 324

Query: 314 GMRT 317
             R 
Sbjct: 325 VERI 328


>gi|163816702|ref|ZP_02208065.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759]
 gi|158447959|gb|EDP24954.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759]
          Length = 311

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 171/305 (56%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S         G  +I +D+D  A++   +
Sbjct: 5   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVRRLGEGGKLIGIDQDEDAIAAATK 64

Query: 77  TMRDYKEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK++ ++ +     F ++ D +  + VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLEPYKDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM +    +A D+VN+    +L RIL   GEE+ A  IA+ I K RQ     TT++L+
Sbjct: 125 DMRMDNRQSKTAKDIVNEYPEAELFRILRDYGEERYAKSIAYHICKYRQDKEIDTTEELN 184

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++   ++N + HP+ ++FQA+RI +N E++ L   +     +L  GG L +++FH
Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +   +    +    +  + IT+K ++P + ++  N RS+S+K
Sbjct: 245 SLEDRIVKTAFRKNENPCICPPNFPVCTCGRKSRGRVITRKPIIPGERELIENSRSKSSK 304

Query: 311 LRAGM 315
           LR   
Sbjct: 305 LRVFE 309


>gi|91205355|ref|YP_537710.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C]
 gi|122425755|sp|Q1RJ43|RSMH_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91068899|gb|ABE04621.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C]
          Length = 305

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/306 (40%), Positives = 182/306 (59%), Gaps = 5/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74
               H+PV+L +++  L P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MQQPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E   +YK++F   +  F      +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + +N A  KDL  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++  +   +  +I PAT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSCI-GFRKGKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A       +         + IT K  +P+ ++++ N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKL 299

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 300 RAAKKI 305


>gi|227885013|ref|ZP_04002818.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972]
 gi|301048472|ref|ZP_07195498.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1]
 gi|227837842|gb|EEJ48308.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972]
 gi|300299686|gb|EFJ56071.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1]
 gi|307551926|gb|ADN44701.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli ABU
           83972]
          Length = 313

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV D+     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|313680156|ref|YP_004057895.1| S-adenosyl-methyltransferase mraw [Oceanithermus profundus DSM
           14977]
 gi|313152871|gb|ADR36722.1| S-adenosyl-methyltransferase MraW [Oceanithermus profundus DSM
           14977]
          Length = 286

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/304 (39%), Positives = 172/304 (56%), Gaps = 19/304 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           +  T   H PVLL + + LLN  P  V +DATFG GG++R   + G  V+A+D+DP A  
Sbjct: 1   MTLTETTHEPVLLHESLDLLNVQPEGVYVDATFGGGGHTRGIVERGGQVVAIDQDPDAHE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +                   + D +    V G++ DLGVSS   D  +RGFS+Q+ GP
Sbjct: 61  RAERLGGVAIRFVRSNFRDLEAVLDALGVPSVQGILADLGVSSYHFDDPERGFSYQREGP 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G +A++VVN    ++L  ++   GEE+Q+ RIA AIV+ R+ AP  TT  L+
Sbjct: 121 LDMRMGHEGPTAAEVVNTLGEEELAELIWRYGEERQSRRIARAIVEARKEAPIATTTQLA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ V F K    HPA ++FQALRI+VN+E+  L   L +A + L  GG L+V+SFHS
Sbjct: 181 EIVRRAVGFRKAG--HPARKTFQALRIYVNDELGALEALLEAAGRVLAPGGRLVVISFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK F                       F+ +TKK ++P  E+ A N R+RSAKLR
Sbjct: 239 MEDRIVKHFLKG-----------------DPRFRVLTKKPLMPGPEEAARNPRARSAKLR 281

Query: 313 AGMR 316
           AG R
Sbjct: 282 AGER 285


>gi|308181002|ref|YP_003925130.1| cell division protein MraW [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046493|gb|ADN99036.1| cell division protein MraW [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 319

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +      ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y  + Q +  ++ F+ L+  +  +    VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S   +A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK  F   S        +          ++ +++K VVP+  ++  NR
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLRA  R
Sbjct: 302 RARSAKLRAIER 313


>gi|28378805|ref|NP_785697.1| cell division protein MraW [Lactobacillus plantarum WCFS1]
 gi|38258035|sp|Q88V76|RSMH_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28271642|emb|CAD64548.1| cell division protein MraW [Lactobacillus plantarum WCFS1]
          Length = 319

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +      ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLEGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y  + Q +  ++ F+ L+  +  +    VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S   +A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK  F   S        +          ++ +++K VVP+  ++  NR
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLRA  R
Sbjct: 302 RARSAKLRAIER 313


>gi|330686332|gb|EGG97937.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU121]
          Length = 311

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++++  + +   + F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVN+   + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A   +K  G + V+
Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIGLVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRIAE 308


>gi|297539600|ref|YP_003675369.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301]
 gi|297258947|gb|ADI30792.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301]
          Length = 316

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/318 (34%), Positives = 163/318 (51%), Gaps = 13/318 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
            S +      H+ VLLE+ +  L      V +D TFG GG+SR   +       +IA DR
Sbjct: 1   MSELSLNTNSHITVLLEEAVQALAIKADGVYVDGTFGRGGHSRKILEKLGSSGRLIAFDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           D  A+   +E       +FS+  + F+ +Q  + +     VDG++ DLG+SS QID   R
Sbjct: 61  DLKAIESSKEI---TDPRFSMVHSHFAGMQAELSEMGVSKVDGILLDLGISSPQIDDASR 117

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQ 181
           GFSF+   PLDMRM   SG +A+D +     + L  ++   GEE+ A +IA   I +R  
Sbjct: 118 GFSFRYDAPLDMRMDQSSGQTAADFLANTTEQHLGEVIKNYGEERFAKQIARAIITERND 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                TT  L+ ++   V   +  + +PATR+FQALRI+VN E+EEL+  +      L  
Sbjct: 178 GRAITTTGQLAKVVAGAVTRFEPGQ-NPATRTFQALRIYVNQELEELSLTMPQCLALLAP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDV 300
            G L V+SFHSLEDR+VK+F   +  +     +     A     +     K + P+ ++V
Sbjct: 237 QGRLAVISFHSLEDRIVKQFIRDQENRDDLPANFPVRAADLPQPKLKGVGKTIKPSTKEV 296

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N RSRSA LR   RT 
Sbjct: 297 KANPRSRSAVLRVAERTN 314


>gi|218698505|ref|YP_002406134.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI39]
 gi|263446431|sp|B7NHI8|RSMH_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218368491|emb|CAR16226.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli IAI39]
          Length = 313

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQFGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|161504759|ref|YP_001571871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|262826357|sp|A9MQD1|RSMH_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160866106|gb|ABX22729.1| hypothetical protein SARI_02882 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 313

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQAI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRVLGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|291529266|emb|CBK94852.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1]
          Length = 314

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VL ++ I  LN  P  + +D T G  G+S    K       +I +D+D  A+ 
Sbjct: 1   MEFKHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E + ++ ++ ++ ++ +S +++ +     + VDG++ DLGVSS Q+D   RGF+++ 
Sbjct: 61  AAGERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRS 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     T
Sbjct: 121 EDAPLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITT 180

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+ +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + 
Sbjct: 181 TGELNEIIKAAIPKKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRIC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK  F                   + +    IT+K ++P+++++  N R
Sbjct: 241 IITFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSR 300

Query: 306 SRSAKLRAGMRTV 318
           S+SAKLR   +  
Sbjct: 301 SKSAKLRVFEKND 313


>gi|239636344|ref|ZP_04677346.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603]
 gi|239597699|gb|EEQ80194.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603]
          Length = 311

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++++  + +   + F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVN+   + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +  T ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRIAE 308


>gi|262282191|ref|ZP_06059960.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA]
 gi|262262645|gb|EEY81342.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA]
          Length = 316

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  Q  F  L+     +    +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIEKGMVTFVQDNFRHLKLQLKKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA  VVN  +  DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDMLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + I++K ++P+ E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAEELELNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKV 314


>gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
 gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
          Length = 394

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 158/331 (47%), Positives = 208/331 (62%), Gaps = 8/331 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           +      H+PV+LE+V+  L P  G  I+DATFGAGGYSR+    G+ VI +DRDP AV+
Sbjct: 57  MSTPDQPHIPVMLEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGATVIGIDRDPDAVA 116

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q  + ++    +L    FSQL         + VDGVV D+GVSSMQID  +RGFSF +
Sbjct: 117 AAQPMLAEFDGSLTLHHGRFSQLDKICRSAGHETVDGVVADIGVSSMQIDQAERGFSFLR 176

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM  SG SA+DVVN     DLTR++GILGEE+QASR++  IV+ R   PF+TT 
Sbjct: 177 DGPLDMRMEQSGPSAADVVNLLPRNDLTRVIGILGEERQASRVSAQIVEDRAKRPFETTL 236

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+SL++K +     ++IHPATR+FQALRIFVN E+++LAQ L +AE+ L  GG L+VV+
Sbjct: 237 QLASLVEKVLSRKAKDKIHPATRTFQALRIFVNGELDQLAQALLAAERVLVPGGRLVVVT 296

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK F   R+ +    RHM   +     F  I +  +  +  +   N R+RSA
Sbjct: 297 FHSLEDRLVKIFLKDRAEQASGSRHMPVVDITTPTFNQIKRGAISASAAEAEINPRARSA 356

Query: 310 KLRAGMRTVERSI-----EDDSFVHLPRLPT 335
           KLR  +RT E        +D S   LPRLP 
Sbjct: 357 KLRWAVRTEEPPRVNSNGDDLSIFGLPRLPD 387


>gi|313899190|ref|ZP_07832710.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2]
 gi|312956013|gb|EFR37661.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2]
          Length = 311

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 164/310 (52%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL + I  L      + +D T G GG+S          ++ A DRD  A+   
Sbjct: 1   MMKHYSVLLHESIDNLAIHSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEKS 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +    +  +L  + FS L+  +  +   G+DG+V DLGVSS Q D   RGFS++   
Sbjct: 61  RERLAQIGDNVTLIHSNFSNLKRELTARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA  VVN+   ++L RI    GEE  A +IA  I K R+  P +TT  
Sbjct: 121 PLDMRMDQSQKLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKAREVKPIETTFA 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +     N + HPA + FQA+RI VN+E+ EL   LR A + L  GG L V+S
Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQLVLRDALELLHVGGRLCVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK  F+S S      + +   P +   A ++ + KK +  T+E++  N RS 
Sbjct: 241 FQSLEDRIVKDTFSSCSKPKQYDKRIPILPQDMEAAPYRLLNKKPITATEEELRENMRSH 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRCIERI 310


>gi|118581697|ref|YP_902947.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379]
 gi|262824775|sp|A1AU69|RSMH_PELPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118504407|gb|ABL00890.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379]
          Length = 313

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75
           H+ V+ E+V+  L+P PG   LD T G GG++    +     G  +I +DRD  A+    
Sbjct: 6   HLSVMPEEVLRFLSPRPGGCYLDGTLGGGGHAALVAERCAPGGGTLIGMDRDLEALKAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + +   L    F+ +   +       +DG V DLGVSS Q+D   RGFSFQ+ G 
Sbjct: 66  ERLSRFGDAVRLLHGNFADIATRLDSLGVDALDGFVLDLGVSSHQLDTARRGFSFQQEGA 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG +A+D+VN+    +L RI+   GEE+ A RIA  IV+ R  AP + T  L
Sbjct: 126 LDMRMDGDSGETAADLVNRLPEHELERIIREYGEERWAKRIASFIVRARSEAPIENTLRL 185

Query: 192 SSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  +K   R+HPATR+FQALRI VN+E+E L +GL+SA   LK GG  +V+SF
Sbjct: 186 VDIIKGAIPKAKWEERLHPATRTFQALRIAVNHELESLERGLKSAIDRLKPGGRGVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      R++           + +T + V  T+E++  N RSRSA
Sbjct: 246 HSLEDRIVKHVFREYAAGCTCPRNLPVCVCGRQPRVRVLTGRPVTATEEELRDNPRSRSA 305

Query: 310 KLRAGMR 316
           KLRA  +
Sbjct: 306 KLRAVEK 312


>gi|315646023|ref|ZP_07899144.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453]
 gi|315278784|gb|EFU42098.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453]
          Length = 317

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 168/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL ++    L   P  + +D T G  G+S            +IALD+D +A++ 
Sbjct: 1   MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSNGRLIALDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E M+ Y ++ +L +  F  L++               VDG++FDLGVSS Q D G+RG
Sbjct: 61  AREVMKPYVDRITLVKTNFRDLEEVLRIEVGVDENGQPQVDGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR   
Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYEYGEEKFSRRIAKVIVERRVQG 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  + +    HPA RSFQA RI VN+E+      L  A + L  G
Sbjct: 181 PIHTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFKDALHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHSLEDR+ K+ F S   K                   + + +K ++P+ E++
Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSVEEI 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 ESNPRARSAKLRIAEK 316


>gi|153809802|ref|ZP_01962470.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174]
 gi|149833980|gb|EDM89060.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174]
          Length = 313

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  VLLE+ I  L   P    +D T G  G+++            I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLEETIDGLRVKPDGTYVDGTLGGAGHAQEVCRRLSAKGRFIGIDQDQDAIV 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  Y ++  + ++ +  + + + +   + VDG+V DLGVSS Q+D  +RGF+++ 
Sbjct: 61  AASERLSAYGDRVQIIRSNYCYMANELKNLGIQKVDGIVLDLGVSSYQLDNEERGFTYRV 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A+D+VN  + ++L RI+   GE+K A  IA  IV  R  AP QTT
Sbjct: 121 DAPLDMRMDQRQSRTAADIVNGYDERELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I++++         HPA R+FQA+RI +N E++ L + L      L  GG + +
Sbjct: 181 GELTEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                     +  + IT+K ++P++ ++  N RS
Sbjct: 241 ITFHSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPSETEMEENPRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|160880611|ref|YP_001559579.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
 gi|263433295|sp|A9KM86|RSMH2_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|160429277|gb|ABX42840.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
          Length = 317

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/314 (32%), Positives = 175/314 (55%), Gaps = 9/314 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           ++      H+ VLL++ I  LN  P  + +D T G GG++    K        I +D+D 
Sbjct: 2   SLEEKEFKHISVLLQETIDSLNIKPDGIYVDGTLGGGGHAYEVLKRLSPKGRYIGIDQDE 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            A++   + + ++ +Q ++ ++ +  ++  + D     VDG++ DLGVSS Q+D  +RGF
Sbjct: 62  DAIAAAGKRLSEFSDQVTIVRSNYCNMKQVLKDLGIDKVDGILLDLGVSSYQLDTPERGF 121

Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++++ PLDMRM      +A D+VN+ + +++ RI+   GE+K A  IA  IV+ R   P
Sbjct: 122 SYRENAPLDMRMDNRNSLTARDIVNEYSEQEIYRIIRDYGEDKFAKNIAKHIVRMRSEKP 181

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L+  I+  +    + N  HPA ++FQA+RI +N+E+E L   L      LK  G
Sbjct: 182 LETTDELTEAIKAAIPMKIRMNTGHPAKKTFQAIRIELNHELEVLTNTLEDMIDLLKEDG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302
            L +++FHSLEDR+VK  F       +   +              ITKK ++P+++++ +
Sbjct: 242 RLSIITFHSLEDRIVKAAFRKNENPCVCPPNFPVCVCNRKPKGIHITKKPILPSEQELEY 301

Query: 303 NRRSRSAKLRAGMR 316
           N+RS+SAKLR   +
Sbjct: 302 NKRSKSAKLRVFEK 315


>gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
          Length = 313

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 138/313 (44%), Positives = 196/313 (62%), Gaps = 9/313 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
               H PVLL++V+A + P+P   I+DATFGAGGYSR+  + G+ V A DRDP A+  GQ
Sbjct: 1   MTAPHTPVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGARVYAFDRDPNAIRDGQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + ++  + SL    FS +++ +       VD VV D+GVSSMQ+D G+RGF+F   GP
Sbjct: 61  GMVAEFDGRLSLHAERFSSMREEMTRIGVPQVDAVVMDIGVSSMQLDQGERGFAFSADGP 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS +G SA+D +N A+   +  +L   GEE+Q+ R+A AIV  R   P +TT DL+
Sbjct: 121 LDMRMSQAGESAADFLNTADEAAIADVLYQYGEERQSRRVARAIVAAR---PLETTGDLA 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K +    +++  PATRSFQA+RI VN+E+ EL  GL +AE  L+ GG+L VVSFHS
Sbjct: 178 RVVRKALGHKPHDKKDPATRSFQAVRIHVNDELGELRAGLNAAETLLREGGVLAVVSFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+F    SG   AV   +P      P  F  ++ K + P+  ++  N RSRS+ 
Sbjct: 238 LEDRIVKRFLKEASGAGRAVSRHLPGEVPGPPPTFTRVS-KAIRPSGAEIERNPRSRSSI 296

Query: 311 LRAGMRTVERSIE 323
           LR  +RT   + E
Sbjct: 297 LRHAIRTSAPARE 309


>gi|322387149|ref|ZP_08060759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus infantis ATCC 700779]
 gi|321141678|gb|EFX37173.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus infantis ATCC 700779]
          Length = 316

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV V+L + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  L+D + D     +DG+ +DLGVSS Q+D  +RGFS++K+ 
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKNA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREQKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEVSTVKVPKGLPFIPDDLKPKMELVSRKPILPSKEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|317501224|ref|ZP_07959429.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090030|ref|ZP_08338919.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|316897400|gb|EFV19466.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402492|gb|EGG82061.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 311

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VLL + +  LN  P  V +DAT G GG++   C+        I +D+D  A+ 
Sbjct: 1   MAFEHVSVLLNETVDGLNVKPDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ + E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AAGERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRV 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN+ +  +L R++   GE+K A  IA  IV+ R+  P +TT
Sbjct: 121 DAPLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVEERRKNPIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I   +    +    HP+ R+FQA+RI +N+E++ L + L    + L  GG + +
Sbjct: 181 GQLNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           H         +  + IT+K ++P++ +   N RS
Sbjct: 241 ITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|26246015|ref|NP_752054.1| S-adenosyl-methyltransferase MraW [Escherichia coli CFT073]
 gi|300981119|ref|ZP_07175365.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1]
 gi|30173069|sp|Q8FL68|RSMH_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|26106412|gb|AAN78598.1|AE016755_98 S-adenosyl-methyltransferase mraW [Escherichia coli CFT073]
 gi|300409021|gb|EFJ92559.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1]
 gi|315294723|gb|EFU54066.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 153-1]
          Length = 313

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV D+     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+  +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|324008349|gb|EGB77568.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 57-2]
          Length = 313

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDRRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|218780979|ref|YP_002432297.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans
           AK-01]
 gi|263447357|sp|B8FBS6|RSMH_DESAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218762363|gb|ACL04829.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans
           AK-01]
          Length = 326

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 127/308 (41%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV V+ ++V++LL+PAPG V++D TFG GG++R+  +       +I  D D  AV+  Q 
Sbjct: 5   HVSVMKQEVLSLLSPAPGHVVVDGTFGGGGHARAILERILPDGLLIGTDLDEDAVTNAQA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              D +  F +F   FS ++  +      G +G+V DLGVS   ++   RGFSFQ+  PL
Sbjct: 65  CFADVQNNFRIFHDNFSNIRAVLDQCGLAGANGIVLDLGVSLHLLEKSGRGFSFQREEPL 124

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  S  G  A DVVN  +  +L RI    GEE+QA RIA  IV+RR+  P  T+  L
Sbjct: 125 DMRMDGSGGGPKAMDVVNAYSQDELARIFLEYGEERQAKRIARRIVQRREDEPITTSGRL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   K  RIHPATR FQALRI VNNE+  L + L +    L  GG L ++SFH
Sbjct: 185 ADIVASAV-KGKPGRIHPATRVFQALRIHVNNELAHLEKFLETCLDCLLPGGRLCIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ FA+ +               +    + +TKKVV P+Q +V  N  SRSAK
Sbjct: 244 SLEDRIVKRRFAALAQGCTCPPDFPVCICGNQPKVKILTKKVVKPSQAEVEKNPMSRSAK 303

Query: 311 LRAGMRTV 318
           +RA  +  
Sbjct: 304 IRAMEKLA 311


>gi|73662901|ref|YP_301682.1| S-adenosyl-methyltransferase MraW [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88909221|sp|Q49WW1|RSMH_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72495416|dbj|BAE18737.1| putative methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 311

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L++ I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLKETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLGDEGRLIAIDQDTTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F ++ + + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRKITEILNDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVN+   + L RI    GEEK + +IA  I + R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWEFEKLVRIFHRYGEEKFSKQIARRIEQNREQKPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A  A+K  G + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSLEQAIDAVKMDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K ++ T ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPIIATDEDLEENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|301026110|ref|ZP_07189585.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1]
 gi|300395681|gb|EFJ79219.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1]
          Length = 313

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A+S
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIS 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|254557010|ref|YP_003063427.1| cell division protein MraW [Lactobacillus plantarum JDM1]
 gi|254045937|gb|ACT62730.1| cell division protein MraW [Lactobacillus plantarum JDM1]
          Length = 319

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +      ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y  + Q +  ++ F+ L+  +  +    VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S   +A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERVVQPIV 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK  F   S        +          ++ +++K VVP+  ++  NR
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLRA  R
Sbjct: 302 RARSAKLRAIER 313


>gi|331265736|ref|YP_004325366.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5]
 gi|326682408|emb|CBZ00025.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 169/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  KE  +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKEMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + ++A  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQVARKIEQARELKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEIPKGLPFIPDELKPKMELVSRKPILPSKEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|70726737|ref|YP_253651.1| S-adenosyl-methyltransferase MraW [Staphylococcus haemolyticus
           JCSC1435]
 gi|88909220|sp|Q4L5N0|RSMH_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68447461|dbj|BAE05045.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 311

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  L+     + +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L D + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTDILKNLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   SA +VVNQ   + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQQLSAYEVVNQWPYEALVKIFYRYGEEKFSKQIARRIETHREHQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I   A+    + + +K +  T  D+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATDTDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|116492952|ref|YP_804687.1| S-adenosyl-methyltransferase MraW [Pediococcus pentosaceus ATCC
           25745]
 gi|122265584|sp|Q03EX7|RSMH_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116103102|gb|ABJ68245.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Pediococcus pentosaceus ATCC 25745]
          Length = 314

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H  VLLE+ +  L+     + +D T G GG+SR          ++ + D+D  A+ 
Sbjct: 2   TEFKHTTVLLEETVNGLDVKEDGIYVDCTLGGGGHSRLILSKLGENGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q+ + +Y  K Q +  ++ F  L++ +      GVDGV++DLGVSS Q D   RGFS+
Sbjct: 62  YNQKNLAEYVAKGQVTFVKSNFRNLKNELNHLGIDGVDGVLYDLGVSSPQFDDAGRGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM  +   +A +VVN+ +  DL RI    GEEK + ++A  I   R+  P +
Sbjct: 122 RFDAPLDMRMDQTQKLNAREVVNEWSYNDLVRIFFRYGEEKYSKQVARKIESTREEKPIE 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ LI+  +   ++    HPA + FQA+RI VN+E+  L + L  A + L   G +
Sbjct: 182 TTGELADLIKSAIPAAARRTGGHPAKKIFQAIRIAVNDELGALEESLEQALQILNPAGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK+ F  ++          I  +     ++ I +K ++P+++++  NR
Sbjct: 242 SVITFQSLEDRLVKRMFKEQTEIGDLPAGLPIIPDDMKPKYKLINRKPIIPSEDELEENR 301

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 302 RSHSAKLRIIEK 313


>gi|326797507|ref|YP_004315326.1| ribosomal RNA small subunit methyltransferase H [Sphingobacterium
           sp. 21]
 gi|326548271|gb|ADZ76656.1| Ribosomal RNA small subunit methyltransferase H [Sphingobacterium
           sp. 21]
          Length = 303

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 167/310 (53%), Gaps = 16/310 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
             G H+PV+L++ I  L   P  V +D TFG GG+S +  +       +IA D+DP A++
Sbjct: 2   DNGYHLPVMLQECIEALAIKPNGVYVDVTFGGGGHSSAIIQHLGEEGRLIAFDQDPDALN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                     E+F+L    F  L++       K VDG++ DLGVSS Q D  +RGFS + 
Sbjct: 62  NA-----LPDERFTLIHQNFRYLKNNLRLQGLKQVDGILADLGVSSHQFDEAERGFSIRF 116

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM   G   A  ++N  + +DL RI G+ GE + A  +A  IV  R S P  T 
Sbjct: 117 DADLDMRMDRVGELDAKGILNSYSEEDLHRIFGMYGEVQNAKSLAKVIVTSRLSRPINTV 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL S++ K V   K N+     + FQALRI VN E+E L + L  A+  LK GG L+V+
Sbjct: 177 SDLKSIVSKLVPRGKENK--YYAQLFQALRIEVNKELEALQEFLVQAQAVLKPGGRLVVM 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK F A    K    +    +   P  F  +++K ++ +++++  N R+RS
Sbjct: 235 SYHSLEDRLVKNFMAKGKFKGEVEKDFYGNEIKP--FMLVSRKAIIASEDEIRQNNRARS 292

Query: 309 AKLRAGMRTV 318
           AKLR   +  
Sbjct: 293 AKLRVAEKLN 302


>gi|325578829|ref|ZP_08148876.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159653|gb|EGC71785.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 322

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/325 (37%), Positives = 172/325 (52%), Gaps = 18/325 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTTQNSFSAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++  ++       +F +   +FS + D          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGFSF K GPLDMRM    G+SA++ + Q +V DLT +L   GEE+ A RIA AIV+  
Sbjct: 118 DRGFSFMKDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           + A    T+ LS   Q           K+   HPATRSFQA+RI++N E++EL   L SA
Sbjct: 178 KRAIKNGTECLSRTSQLAELIAQAVPFKDKHKHPATRSFQAIRIYINAELDELESVLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      R +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMRKQSKGDDIPRGLPLREDQIQRNQKLKIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
            P++ +++ N RSRSA LR   R  
Sbjct: 298 QPSEAEISANPRSRSAVLRIAERVK 322


>gi|327484905|gb|AEA79312.1| rRNA small subunit methyltransferase H [Vibrio cholerae LMA3894-4]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|320450513|ref|YP_004202609.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01]
 gi|320150682|gb|ADW22060.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01]
          Length = 286

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 129/308 (41%), Positives = 185/308 (60%), Gaps = 25/308 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M++     I +H+PVL E+V+ LL   PG+V +DAT G  G+++   + G  VI LD+DP
Sbjct: 1   MNA-----ITEHIPVLYEEVLNLLQVRPGQVYVDATLGGAGHTKGILERGGLVIGLDQDP 55

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+  +         F        ++        V G++ DLGVSS  ++   RGFS+Q
Sbjct: 56  EAVARARALGLPGLRVFQQNFRHLKEVLQEAGVSQVAGILADLGVSSFHLEDPKRGFSYQ 115

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G +A +VVN   ++DL RIL  LGEEKQA RIA AIV+RR+ AP +TT
Sbjct: 116 REGPLDMRMGEEGPTAYEVVNTLPLEDLRRILRDLGEEKQAHRIAKAIVERRRKAPIRTT 175

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++ V F K    HPA ++FQA+R++VN+E+  L + LR AE+ L  GG L+V+
Sbjct: 176 LELAEVVRQAVGFRKAG--HPARKTFQAIRMYVNDELGALEEFLRQAEEVLAPGGRLLVI 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDR+VK+F    S                   + +TKK + P+ E+VA N RSRS
Sbjct: 234 TFHSLEDRVVKRFLKESS------------------LKVLTKKPITPSPEEVAKNPRSRS 275

Query: 309 AKLRAGMR 316
           AKLRA  +
Sbjct: 276 AKLRAAEK 283


>gi|270292146|ref|ZP_06198361.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143]
 gi|270279674|gb|EFA25516.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + D   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQDAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQGASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|153802806|ref|ZP_01957392.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|254226626|ref|ZP_04920206.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|124121671|gb|EAY40414.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125620845|gb|EAZ49199.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|291550007|emb|CBL26269.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14]
          Length = 311

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VLL + +  LN  P  + +DAT G GG++   C        +I +D+D  A+ 
Sbjct: 1   MAFEHVSVLLHETVDGLNVKPDGIYVDATLGGGGHAYEVCTKLGEQGRLIGIDQDADAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + +  + E+ ++ ++ +  ++  + +     VDG+  DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AAGKRLEGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGITVDLGVSSYQLDTAERGFSYRV 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN  +  +L R++   GE++ A  IA  IV  R   P +TT
Sbjct: 121 DAPLDMRMDQRQKMTARDIVNDYSESELYRVIRDYGEDRFAKNIAKHIVAERAKGPIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I   +    +    HP+ R+FQALRI +N+E++ L   L      L  GG L +
Sbjct: 181 GQLNEIISHAIPMKIQKTSGHPSKRTFQALRIELNHELDVLRDTLDDMIDLLNPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F       +   H       + +  + IT+K ++P++E++  N RS
Sbjct: 241 ITFHSLEDRIVKSSFRKNENPCICPSHFPVCVCGNVSKGKVITRKPILPSEEELTVNSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|62178687|ref|YP_215104.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565397|sp|Q57TD8|RSMH_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|62126320|gb|AAX64023.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 312

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 2   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++      DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 62  VAQTI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFM 118

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 238 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRELRALGKLMPGEKEVAENP 297

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 298 RARSSVLRIAERTNA 312


>gi|121728362|ref|ZP_01681391.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675217|ref|YP_001217911.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O395]
 gi|153214084|ref|ZP_01949218.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153826882|ref|ZP_01979549.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153830362|ref|ZP_01983029.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229521240|ref|ZP_04410660.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80]
 gi|229524395|ref|ZP_04413800.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis
           VL426]
 gi|229528604|ref|ZP_04417994.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)]
 gi|262168390|ref|ZP_06036087.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27]
 gi|262190392|ref|ZP_06048652.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93]
 gi|297581036|ref|ZP_06942961.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385]
 gi|121629353|gb|EAX61784.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124115510|gb|EAY34330.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|146317100|gb|ABQ21639.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148874169|gb|EDL72304.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149739298|gb|EDM53554.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|227014303|gb|ACP10513.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae O395]
 gi|229332378|gb|EEN97864.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)]
 gi|229337976|gb|EEO02993.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis
           VL426]
 gi|229341772|gb|EEO06774.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80]
 gi|262023282|gb|EEY41986.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27]
 gi|262033732|gb|EEY52212.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93]
 gi|297534862|gb|EFH73698.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|317132992|ref|YP_004092306.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense
           YUAN-3]
 gi|315470971|gb|ADU27575.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense
           YUAN-3]
          Length = 312

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H  VLL + I  L   P  V +D T G GG+S +     +    +IALD DP AV    
Sbjct: 5   YHQSVLLHESIEALAIRPDGVYVDGTAGGGGHSAAIAAGLES-GRLIALDADPDAVRAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  +  +  + Q+ F  ++  + D     VDG++ DLGVSS Q D   RGFS++   P
Sbjct: 64  ERLAPFGSKACVVQSNFRDMKRVLADLGIAEVDGILLDLGVSSHQFDTPARGFSYRADAP 123

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS SG+ A +++  A+  +L RIL   GEE+ A RIA AI KRR++ P +TT +LS
Sbjct: 124 LDMRMSQSGLGARELLATASYAELVRILREYGEERFAPRIAAAICKRRETKPLETTFELS 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+++          HPA ++FQALR+ VN E+E L+  L  A   L+ GG L +++FHS
Sbjct: 184 ELVREAYPAPARRSGHPARKTFQALRMAVNGELESLSVLLDDALALLRPGGRLCIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F S +   +                + + K+ V+P+ E++  N+RSRSA+L
Sbjct: 244 LEDRMVKQRFLSWAQGCICPPDFPVCVCGRKPQVRVVYKRGVLPSAEEIEANQRSRSARL 303

Query: 312 RAGMRTV 318
           R   +  
Sbjct: 304 RVAEKLE 310


>gi|229514038|ref|ZP_04403500.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21]
 gi|229349219|gb|EEO14176.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21]
          Length = 316

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 173/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L  A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALCGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|307711383|ref|ZP_07647801.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321]
 gi|307616801|gb|EFN95983.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321]
          Length = 316

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQTRLHEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|168464328|ref|ZP_02698231.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443193|ref|YP_002039352.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|262826395|sp|B4SU42|RSMH_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194401856|gb|ACF62078.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195632559|gb|EDX51013.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 313

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQAI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|223043777|ref|ZP_03613820.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14]
 gi|222442874|gb|EEE48976.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14]
          Length = 311

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  ++++  + +     F +L + + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKVVLKEHLHKVTFVHNNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A +++   G + V+
Sbjct: 181 QLVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I    +    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|254491294|ref|ZP_05104474.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxidans DMS010]
 gi|224463423|gb|EEF79692.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxydans DMS010]
          Length = 312

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 122/314 (38%), Positives = 181/314 (57%), Gaps = 10/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  +  +H+PVLL + IA L+       LDATFG GG+SR+   +      ++ LDRDP 
Sbjct: 1   MTESHSEHLPVLLNETIAALSVKADGKYLDATFGRGGHSRAILALLSDDGRLLGLDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           AV+ G++ +     +F++    FS++       +    +DG++ D+GVSS Q+D  +RGF
Sbjct: 61  AVATGKQ-LAQQDNRFAIEYCAFSEMATAAHARLWQNNIDGILMDIGVSSPQLDDAERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K GPLDMRM+ + GISA++ +  A + D+  ++  LGEE+   RIA AIV+ R   P
Sbjct: 120 SFSKDGPLDMRMNPNAGISAAEWLATAEMDDIAHVIKTLGEERYGKRIARAIVETRDENP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ L+ K    S+    HPATR+FQA+RIF+NNE+EEL   L  A   L  GG 
Sbjct: 180 ITTTKQLADLVDKA-SPSREKHKHPATRTFQAIRIFINNELEELTLALEQALDVLAVGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+FF   +       H   +         I  K +  ++ ++A N 
Sbjct: 239 LVVISFHSLEDRIVKRFFRDEARGDDFPAHFPVTVEQLNPRLKIIGKAIKASETELADNP 298

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA LR   +  
Sbjct: 299 RARSAVLRVAEKLA 312


>gi|121602081|ref|YP_989236.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583]
 gi|263445982|sp|A1UTD3|RSMH_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120614258|gb|ABM44859.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583]
          Length = 331

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 156/320 (48%), Positives = 209/320 (65%), Gaps = 2/320 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE V+A L P  G  ++D TFGAGGY+R+    G+NV ALDRDP A+  G+  + 
Sbjct: 11  HIPVLLEPVLAGLAPLSGATVIDGTFGAGGYTRALLNAGANVTALDRDPHAIREGKPLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L Q  FSQL   + +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  QFFPRLRLVQTEFSQLDRVIEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SASDVVN   + DL +I  ILGEE+ +SRIA  I KRR+  PF  T+DL+  I+  +
Sbjct: 130 TGLSASDVVNHLKIDDLIQIFRILGEERHSSRIAKMIEKRRRIRPFLRTRDLAHEIEVLI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+E+ EL +GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDELNELTRGLFAAERVLKAGGRLGVVSFHSLEDRIVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+  SG     R++    + PA F  + K     ++E++  N R+RSA+LR G+RT  
Sbjct: 250 KFFSFCSGNRKGSRYLPEVESAPATFFPLFKGGKTASEEELQKNPRARSARLRIGIRTQV 309

Query: 320 RSIEDD-SFVHLPRLPTLSQ 338
            ++E D     L  +     
Sbjct: 310 DAMEADMKLFGLKEIANFES 329


>gi|322713140|gb|EFZ04711.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 312

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 2   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++      DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 62  VAQTI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFM 118

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 238 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 297

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 298 RARSSVLRIAERTNA 312


>gi|222031913|emb|CAP74651.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli LF82]
 gi|312944688|gb|ADR25515.1| S-adenosyl-methyltransferase MraW [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 313

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIYGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|239623438|ref|ZP_04666469.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521469|gb|EEQ61335.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 168/312 (53%), Gaps = 8/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +      H  VLL + +  LN  PG + +D T G GG++   CK      +I +D+D  A
Sbjct: 1   MEEQAFVHKSVLLYETVGSLNIKPGGIYVDGTLGGGGHAYEVCKRLGSGRLIGIDQDADA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  +K++ ++ ++ +  ++  + +     VDG+  DLGVSS Q+D   RGF++
Sbjct: 61  IEAAGRRLEHFKDKVTIVRSNYENIRTVLNELGLLKVDGIYLDLGVSSYQLDTASRGFTY 120

Query: 128 QKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM     + + D+VN     +L RI+   GE+  A  IA  IV+ R   P +
Sbjct: 121 REDAPLDMRMDQRNTTTAADIVNTYTEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +I+  +    +    HPA R+FQA+RI  N+E++ L Q + +  + L  GG L
Sbjct: 181 TTGELAEIIKAAIPARVRATGGHPAKRTFQAIRIECNHELDVLEQSIDTMIELLNPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F +     +             +  + +++K ++P++E++  N 
Sbjct: 241 SIITFHSLEDRIVKNRFRTNENPCICPHEFPVCVCGRKSKGKVVSRKPILPSKEELEENS 300

Query: 305 RSRSAKLRAGMR 316
           RS+SAKLR   R
Sbjct: 301 RSKSAKLRVFER 312


>gi|295109202|emb|CBL23155.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162]
          Length = 314

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 165/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  VLL++ I  L+  P  + +D T G  G++             I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLDETIEGLSIRPDGIYVDGTLGGAGHASEVCQRLSAKGRFIGIDQDQDAII 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  Y+++ ++ ++ +  + + + +   + V+G+V DLGVSS Q+D  +RGF+++ 
Sbjct: 61  AASERLAAYEDRVTIIRSNYCYMVNELKNLGIQKVNGIVLDLGVSSYQLDNEERGFTYRV 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A+D+VN  + K+L RI+   GE+K A  IA  IV  R  AP QTT
Sbjct: 121 DAPLDMRMDQRQSRTAADIVNGYDEKELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I++++         HPA R+FQA+RI +N E++ L + L      L  GG + +
Sbjct: 181 GELTEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                     +  + IT+K ++P+  ++  N RS
Sbjct: 241 ITFHSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKESKGKVITRKPILPSAVEMEENPRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|332969039|gb|EGK08079.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           kingae ATCC 23330]
          Length = 321

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 167/313 (53%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++    +H+ VLL + +A LN  P  V +D TFG GG+SR           +I  D+DP 
Sbjct: 1   MNTQTFEHITVLLHEAVAALNIQPNGVYVDGTFGRGGHSRLILSQLGEQGRLIVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   Q+ +     + S+    F+  +    +     +DG +FDLG+SS Q+D G RGFS
Sbjct: 61  AIEVAQK-LAQQDARVSVVHNGFATFEAACTNLGLDKIDGALFDLGISSPQVDDGSRGFS 119

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G SA++ +  A+ +++  ++   GEE+ + +IA  IV +R  +P 
Sbjct: 120 FRFDAPLDMRMDTTRGQSAAEWLAVASEQEIHEVIKNYGEERFSRQIARTIVAQRSESPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+ L+++  + V  S+      ATR+FQA+RIF+N E++E+ Q L      L  GG L
Sbjct: 180 NTTRQLAAITAQCV-RSRERGQDRATRTFQAIRIFINRELDEVEQVLPQVVNRLNVGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK+F    S      +   I     P     +  K    + ++V  N 
Sbjct: 239 AVIAFHSLEDRIVKQFMRQHSSHAPLPKWAAIKEADLPQPPLQLIGKASKASVQEVQHNP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 299 RARSAVLRVAERT 311


>gi|149910619|ref|ZP_01899257.1| S-adenosyl-methyltransferase [Moritella sp. PE36]
 gi|149806347|gb|EDM66322.1| S-adenosyl-methyltransferase [Moritella sp. PE36]
          Length = 313

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 122/307 (39%), Positives = 182/307 (59%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + +A L+  P  + +D TFG GG+SR           +IA+DRDP A++ G+ 
Sbjct: 7   HVSVLLNETVAGLDLKPDGIYIDGTFGRGGHSRFILSQLGENGRLIAIDRDPEAIAVGEA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++    +F +    FS + DY+ +K     +DGV+ DLGVSS Q+D   RGFSF + GP
Sbjct: 67  -LKLEDPRFDIVHGPFSGIADYMENKGLTGHIDGVLLDLGVSSPQLDDASRGFSFLRDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + GISA+  +  A+  D+  +L + GEE+ A +IA A+V  R   PF+TT  L
Sbjct: 126 LDMRMDPTSGISAAKWLATADYDDIVWVLKVFGEERFARKIARAVVFDRDDKPFETTSQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +SLI + V  SK    HPATRSFQA+RI++N+E+EE+ + L  A + LK+GG L V+SFH
Sbjct: 186 ASLICRVVPKSKKETKHPATRSFQAIRIYINSELEEIERALAGALQCLKSGGRLSVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F   ++        +                 K++ P+++++  N R+RS+
Sbjct: 246 SLEDRIVKQFIRKQARGKEVPYGLPIMQEEIDKTRTMKAIGKMLKPSEDELELNPRARSS 305

Query: 310 KLRAGMR 316
            LR   +
Sbjct: 306 VLRVAEK 312


>gi|293364229|ref|ZP_06610955.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus oralis ATCC 35037]
 gi|307702416|ref|ZP_07639372.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037]
 gi|291317075|gb|EFE57502.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus oralis ATCC 35037]
 gi|307623998|gb|EFO02979.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037]
          Length = 316

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|56412392|ref|YP_149467.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361328|ref|YP_002140963.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|68565445|sp|Q5PDH4|RSMH_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826422|sp|B5BLG4|RSMH_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56126649|gb|AAV76155.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092803|emb|CAR58229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 313

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQAI---SDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
 gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
          Length = 330

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 152/330 (46%), Positives = 203/330 (61%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M++      G HVPVLL  ++  + P      LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MTTDRPTPSGPHVPVLLRPLLKAVAPVS-GRWLDGTFGAGGYTRGLLEAGAEQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    DY ++  L +  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAQPWAADYGDRLVLQEGVFSKMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG SA+D+V + +   L  IL   GEE+ + RIA +IVK R+  P  T
Sbjct: 118 MRDGPLDMRMSQSGPSAADLVAELSEVQLADILFHFGEERASRRIAKSIVKTRELEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI+  +  +K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLQLAKLIEGCLPRAKPGKSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+ K   A R+       P+ F+ +T+K V P  +++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGRANRYAPEVAEIPSQFELVTRKAVGPDDDELAENPRS 297

Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPT 335
           RSA+LR G RT           + +P+L  
Sbjct: 298 RSARLRVGRRTDAAPVPISAKDLSMPQLKE 327


>gi|251792015|ref|YP_003006735.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus
           NJ8700]
 gi|263446623|sp|C6AKG2|RSMH_AGGAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247533402|gb|ACS96648.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus
           NJ8700]
          Length = 322

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 120/325 (36%), Positives = 172/325 (52%), Gaps = 18/325 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+     +  +H  VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTHLNAFSSVEHSTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGKLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP AV+  Q+       +F +   TFS++      +     +DG++ DLGVSS Q+D  
Sbjct: 61  RDPKAVAEAQKI---QDPRFQIEHNTFSEILSICEKRGLVGKIDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF K GPLDMRM    GISA++ + Q + +DL  +L   GEE+ A +IA AIV   
Sbjct: 118 ARGFSFMKDGPLDMRMDDSKGISAAEWLQQVSEQDLAWVLKTFGEERFAKKIAKAIVNYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    ++ L+  +Q           K+   HPATRSFQA+RIF+N E++EL + L+SA
Sbjct: 178 KSAVQNGSEFLTRTLQLAELIAHTVPFKDKHKHPATRSFQAIRIFINAELDELEKVLQSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
              L   G L V+SFHSLEDR+VK F   +S      + +          Q   +  K +
Sbjct: 238 LTVLAPAGRLSVISFHSLEDRMVKHFMRKQSQGREIPKGLPLREDQIQRNQTLKVIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
           +PT  ++A N R+RSA LR   R  
Sbjct: 298 MPTDAEIAQNPRARSAVLRVAERLN 322


>gi|289168599|ref|YP_003446868.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6]
 gi|288908166|emb|CBJ23008.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6]
          Length = 316

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +  N+ HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKNKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|295688554|ref|YP_003592247.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756]
 gi|295430457|gb|ADG09629.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756]
          Length = 311

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 144/317 (45%), Positives = 200/317 (63%), Gaps = 11/317 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS+A       H+ VLL++V+  L   PG V++D TFGAGGY+R+    G++VI  DRDP
Sbjct: 1   MSAA------PHISVLLDEVVEALGAGPGDVVVDGTFGAGGYTRAVLATGASVIGFDRDP 54

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +    D   +F L QA FS++ D +  + VDGV+ DLGVSSMQ+D  +RGFSF 
Sbjct: 55  TVQRFTEGLPAD---RFRLIQARFSEMLDELGPESVDGVMLDLGVSSMQLDQAERGFSFM 111

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM  +G +A+D+VN  +  +L RIL + GEE  + RIA  I++RR+  PF+ T
Sbjct: 112 RDGPLDMRMGDTGPTAADLVNTLDHAELARILYVYGEEHASRRIASFILRRREERPFERT 171

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ +I++ V   K  ++HPATRSFQ LRI VN+E+ EL  GL +AE+ LK GG L+VV
Sbjct: 172 LDLAEVIERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVV 231

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK F A R+G+                  FQ I+ K + P + ++A N R+
Sbjct: 232 TFHSLEDRIVKAFLAERAGRTPGGSRHAPPVQAGAQPSFQLISNKAIAPGEAELAANPRA 291

Query: 307 RSAKLRAGMRTVERSIE 323
           RS+KLRA +RT     E
Sbjct: 292 RSSKLRAAVRTEAPVWE 308


>gi|295098586|emb|CBK87676.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 313

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRVEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|322375922|ref|ZP_08050433.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300]
 gi|321279190|gb|EFX56232.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300]
          Length = 316

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P    +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGTYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|197265544|ref|ZP_03165618.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243799|gb|EDY26419.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 313

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 120/315 (38%), Positives = 178/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15]
 gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000]
 gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15]
 gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000]
          Length = 311

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 146/317 (46%), Positives = 205/317 (64%), Gaps = 11/317 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS+A       H+ VLL++V+  L+  PG V++D TFGAGGY+R+    G++V+A DRDP
Sbjct: 1   MSAA------PHISVLLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGASVVAFDRDP 54

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      D   +F L QA FS++ D +  + V+GV+ DLGVSSMQ+D  +RGFSF 
Sbjct: 55  TVRQFAANLPAD---RFRLVQARFSEMLDELGPESVEGVMLDLGVSSMQLDQAERGFSFM 111

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM  +G +A+D+VN  +  +L +IL + GEE  + RIA  I++RR+  PF+ T
Sbjct: 112 RDGPLDMRMGDTGPTAADLVNTLDHAELAKILYVYGEEHASRRIASFILRRREERPFERT 171

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ +I++ V   K  ++HPATRSFQ LRI VN+E+ EL  GL +AE+ LK GG L+VV
Sbjct: 172 LDLAEVIERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVV 231

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK F A R+GK        P  A  A   FQ I+ K + P++ ++A N R+
Sbjct: 232 TFHSLEDRIVKAFLAERAGKAPGGSRHAPPVAAGAAPSFQLISNKAIAPSEAELAVNPRA 291

Query: 307 RSAKLRAGMRTVERSIE 323
           RS+KLRA +RT     E
Sbjct: 292 RSSKLRAAVRTDAPVWE 308


>gi|296313573|ref|ZP_06863514.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC
           43768]
 gi|296839874|gb|EFH23812.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC
           43768]
          Length = 319

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 12/320 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      H+ VLL + +  L      + +D TFG GG+SR           +I  D+DP 
Sbjct: 2   IGAESYRHITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQ 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++  +E +    ++  +    F   Q  + D     VDG +FDLG+SS QID G RGFS
Sbjct: 62  AIAVAEE-LARSDKRVGVVHGGFVSFQTALDDLGIGKVDGALFDLGISSPQIDDGSRGFS 120

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P 
Sbjct: 121 FRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L
Sbjct: 181 DTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKQGGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+VK+F    S      R   +  ++      + + +  + P + ++A N
Sbjct: 240 AVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAEIAAN 298

Query: 304 RRSRSAKLRAGMRTVERSIE 323
            R+RSA LR   RT     E
Sbjct: 299 PRARSAVLRVAERTAGPIPE 318


>gi|237807292|ref|YP_002891732.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187]
 gi|262825943|sp|C4LA17|RSMH_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237499553|gb|ACQ92146.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187]
          Length = 308

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 179/308 (58%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P  + +D TFG GG+SR   +       + A+DRDP AV+  +
Sbjct: 2   EHITVLLQEAVDGLAIRPDGIYVDGTFGRGGHSRLILQQLGPQGRLYAIDRDPQAVAVAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F +    FS L +Y+ ++     VDG++ DLGVSS Q+D  +RGFSF   G
Sbjct: 62  EW---QDPRFEIISGPFSSLHEYMAERGLLGKVDGLLLDLGVSSPQLDEAERGFSFMNDG 118

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA++ +  A+V D+  +L   GEE+ A+RIA AIV  R + P+  T+ 
Sbjct: 119 PLDMRMDPLHGESAAEWLLHADVDDIAWVLRTYGEERFANRIARAIVADRVTTPYTRTRQ 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V   + ++ HPATRSFQALRI VN E++E+ + L+++   L  GG L V+SF
Sbjct: 179 LAEMIARVVPNKEKHK-HPATRSFQALRIHVNQELKEIEETLKASLSVLAPGGRLAVISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +   +   R +  +       Q++    K + P   +V+ N RSRS
Sbjct: 238 HSLEDRIVKQFIRQQEKGIQPPRGLPITEDQIRKTQTLHSVGKAIKPADSEVSDNVRSRS 297

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 298 SVLRVAER 305


>gi|295425110|ref|ZP_06817815.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM
           11664]
 gi|295065169|gb|EFG56072.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM
           11664]
          Length = 315

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 13/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG+++          +I  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKDGGLYVDATFGGGGHAKYLLSKLNTGTLIGFDQDEYAIKA 60

Query: 74  GQETM-----RDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +         D   +  L    FS L+          G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKLNFTDLLQEDSNPRLQLVHDNFSHLEQDLVKLGYPDGIDGIYYDLGVSSPQFDQAERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  S    A  +VNQ++ +DL  IL   G+EK + +IAH IV++R+  
Sbjct: 121 FSYRYNARLDMRMDQSKELDAYQLVNQSSQRDLANILYKYGDEKFSRQIAHRIVEKRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  +I++ +    +    HPA +SFQALR+ VN+E+E L   L  A K L+  
Sbjct: 181 PIETTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELEVLQTSLEEAVKLLRPK 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +  +      + + +K +  +  ++  
Sbjct: 241 GRISVITFQSDEDKIVKKIFKKYSEVEVPRGMPMIPDGMKPTLRLVNRKPITASALELEN 300

Query: 303 NRRSRSAKLRAGMRT 317
           N RS SAKLR   + 
Sbjct: 301 NNRSHSAKLRVAEKI 315


>gi|261211507|ref|ZP_05925795.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341]
 gi|262404723|ref|ZP_06081278.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586]
 gi|260839462|gb|EEX66088.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341]
 gi|262349755|gb|EEY98893.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586]
          Length = 316

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S+ + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSEWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|258625131|ref|ZP_05720048.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603]
 gi|262166452|ref|ZP_06034189.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223]
 gi|262170644|ref|ZP_06038322.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451]
 gi|258582582|gb|EEW07414.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603]
 gi|261891720|gb|EEY37706.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451]
 gi|262026168|gb|EEY44836.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223]
          Length = 316

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|307704193|ref|ZP_07641116.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597]
 gi|307622224|gb|EFO01238.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597]
          Length = 316

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|315633809|ref|ZP_07889098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Aggregatibacter segnis ATCC 33393]
 gi|315477059|gb|EFU67802.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Aggregatibacter segnis ATCC 33393]
          Length = 322

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 171/323 (52%), Gaps = 18/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           MS     +  +H  VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MSHLNAFSSAEHATVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP AV   Q+       +F +  + FS +            +DG++ DLGVSS Q+D  
Sbjct: 61  RDPKAVVEAQKI---QDSRFHIEHSAFSDILPICEKLNLVGKIDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA++ +   + +DL  +L   GEE+ A +IA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDDSKGMSAAEWLQHVSEQDLAWVLKTFGEERFAKKIASAIVNYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA     + L+  +Q           K+   HPATRSFQA+RIF+N+E++EL + L+SA
Sbjct: 178 KSAVQNGGECLTRTLQLAELIAQTVPFKDKHKHPATRSFQAIRIFINSELDELEKVLQSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
              L  GG L ++SFHSLEDR+VK F   +S      + +          Q   +  K +
Sbjct: 238 LTVLAPGGRLSIISFHSLEDRMVKHFMRKQSQGEDIPKGLPLREDQIQRNQTLKVIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+ E++A N R+RSA LR   R
Sbjct: 298 MPSDEEIAQNPRARSAVLRIAER 320


>gi|319899165|ref|YP_004159258.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73]
 gi|319403129|emb|CBI76687.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73]
          Length = 346

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 162/325 (49%), Positives = 212/325 (65%), Gaps = 3/325 (0%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PVLL+ V+A + P  G  ++D TFGAGGYSR+    G+ VIALDRDP A+  GQ 
Sbjct: 22  VERHIPVLLQSVLAGIAPLAGARVIDGTFGAGGYSRALLNAGAEVIALDRDPLAIREGQA 81

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  +  L QA FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMR
Sbjct: 82  LVDQFFPRLHLIQAKFSQLDRIV-EGEVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMR 140

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+ +G +A+DVVN   V DL ++   LGEE+ A RIA  I KRR   PF  T DL+  I+
Sbjct: 141 MAQTGFTAADVVNYLKVDDLAQLFKTLGEERYAGRIARMIDKRRYVRPFLRTIDLAHAIE 200

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +     + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKA G L VVSFHSLEDR
Sbjct: 201 TLIGRKPGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAEGRLAVVSFHSLEDR 260

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VKKF ++RSG     R++    + PA F  + K V   TQE++  N R+RSA+LR G+R
Sbjct: 261 MVKKFLSARSGYKKGSRYLPEIKSVPATFVPLFKGVKTATQEELQQNPRARSARLRIGVR 320

Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341
           T E +I  D  + L  L  +++F G
Sbjct: 321 TQEAAIAAD--MKLFGLAEIARFEG 343


>gi|237729380|ref|ZP_04559861.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2]
 gi|226909109|gb|EEH95027.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2]
          Length = 313

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAAMPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGKMMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|16763510|ref|NP_459125.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167550685|ref|ZP_02344442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167989993|ref|ZP_02571093.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230399|ref|ZP_02655457.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234884|ref|ZP_02659942.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243465|ref|ZP_02668397.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262195|ref|ZP_02684168.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168820886|ref|ZP_02832886.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194449989|ref|YP_002044090.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469862|ref|ZP_03075846.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735661|ref|YP_002113138.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248687|ref|YP_002145106.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198243393|ref|YP_002214072.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200386674|ref|ZP_03213286.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205351459|ref|YP_002225260.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855634|ref|YP_002242285.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224581963|ref|YP_002635761.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911177|ref|ZP_04655014.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|20139016|sp|Q8ZRU8|RSMH_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826349|sp|B5F7V6|RSMH_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826360|sp|B5FI64|RSMH_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826371|sp|B5R2L6|RSMH_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826385|sp|B5RH56|RSMH_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826391|sp|B4TJ79|RSMH_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826413|sp|C0Q5H8|RSMH_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826460|sp|B4TXH0|RSMH_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16418619|gb|AAL19084.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194408293|gb|ACF68512.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456226|gb|EDX45065.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711163|gb|ACF90384.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197212390|gb|ACH49787.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197292032|gb|EDY31382.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937909|gb|ACH75242.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603772|gb|EDZ02317.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205271240|emb|CAR36028.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324445|gb|EDZ12284.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331448|gb|EDZ18212.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335013|gb|EDZ21777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337535|gb|EDZ24299.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342387|gb|EDZ29151.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348778|gb|EDZ35409.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206707437|emb|CAR31710.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224466490|gb|ACN44320.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245353|emb|CBG23142.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991798|gb|ACY86683.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156748|emb|CBW16223.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911089|dbj|BAJ35063.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222306|gb|EFX47378.1| rRNA small subunit methyltransferase H [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128440|gb|ADX15870.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621816|gb|EGE28161.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626486|gb|EGE32829.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987073|gb|AEF06056.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 313

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|229822998|ref|ZP_04449068.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271]
 gi|229787811|gb|EEP23925.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271]
          Length = 314

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 167/314 (53%), Gaps = 11/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + +  L+  P  V +D T G  G+++          ++ A D+D  A++
Sbjct: 1   MEFKHETVLLHETVDGLDIKPDGVYVDCTLGGAGHAQYLLGQLGPQGHLYAFDQDMTAIN 60

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +  + DY  K Q +     F  L+  + +     VDG+ +DLGVSS Q+D  +RGFS+
Sbjct: 61  NAKLKLADYVEKGQVTFIHQNFRHLKQALEELGISQVDGIYYDLGVSSPQLDVAERGFSY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +   LDMRM+     SA +VVN+   +DL  IL   GEEK A RIA AI +RR   P +
Sbjct: 121 GQEARLDMRMNQEQALSAYEVVNEWPYEDLVHILYRYGEEKFAKRIARAIEERRAQRPIE 180

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +++  +   ++    HPA RSFQA+RI VN+E+  +   L  A   LK  G +
Sbjct: 181 TTTELAEIVKMAIPAATRRTGGHPAKRSFQAIRIAVNDELGAVEDSLEQALTLLKPEGRV 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDRLVK+ F   S +    R +        A F  + +K +V + E++  N 
Sbjct: 241 SVITFHSLEDRLVKQLFKEVSQEPEVPRGLPVLPGQMQAPFTLVNRKPIVASPEELEANN 300

Query: 305 RSRSAKLRAGMRTV 318
           RSRSAKLR   +  
Sbjct: 301 RSRSAKLRILRKNS 314


>gi|169334628|ref|ZP_02861821.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259345|gb|EDS73311.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM
           17244]
          Length = 308

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 167/306 (54%), Gaps = 8/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VL ++ I +LN     + +D T G  G+S   CK  S     I +D+D F     +
Sbjct: 2   KHISVLYQETIDMLNIKEDGIYVDGTMGGAGHSLGICKKLSEEGIFIGIDQDDFVFDRAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +    +  F  +++ + D     +DG++ DLGVSS QID   RGFSF+K GP
Sbjct: 62  VRLESTDCKKEFVKGNFHDIKEILMDLGIDKIDGMMADLGVSSFQIDDETRGFSFKKDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA ++VN  + +DL R++   GEE+ A  IA  I+K R+  P +TT +L
Sbjct: 122 LDMRMDKSKSFSAKELVNTYSYEDLRRVISEYGEEQFAGNIAKHILKNREEKPIETTYEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +    +   HPA ++FQA+RI VN+EI+ L Q +      L  GG L V++FH
Sbjct: 182 VEIIKNAIPKKFHQMKHPAKKTFQAIRIEVNDEIDALKQSVEDMIDVLDKGGRLAVITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VKK F+  +      +        +    + +T+K ++PT+E++  N RSRSAK
Sbjct: 242 SLEDRIVKKVFSEYAKGCTCPKEFPVCVCGNTPKVKVLTRKPLLPTEEEIEANPRSRSAK 301

Query: 311 LRAGMR 316
           LR   +
Sbjct: 302 LRVIEK 307


>gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
 gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
          Length = 321

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 160/317 (50%), Positives = 209/317 (65%), Gaps = 6/317 (1%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +++  + +L 
Sbjct: 2   IDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEKEFPGRLNLV 61

Query: 89  QATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLDMRMS  G S
Sbjct: 62  ESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLDMRMSSRGPS 121

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
           A+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ I+  V  + 
Sbjct: 122 AADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANAIETLVGRNP 181

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
            +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLEDR+VK+FFA
Sbjct: 182 KDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLEDRMVKRFFA 241

Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
            R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG+RT    +E
Sbjct: 242 DRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAGIRTENPPLE 301

Query: 324 DD-SFVHLPRLPTLSQF 339
           DD S   LP+LP  ++ 
Sbjct: 302 DDLSLFGLPKLPETNEL 318


>gi|296101245|ref|YP_003611391.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055704|gb|ADF60442.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 313

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|114045888|ref|YP_736438.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7]
 gi|123030979|sp|Q0HZS4|RSMH_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113887330|gb|ABI41381.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7]
          Length = 313

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGENGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK+F    S        +  +       + +    K ++P+ E++  
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|15642406|ref|NP_232039.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587636|ref|ZP_01677400.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153818411|ref|ZP_01971078.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822223|ref|ZP_01974890.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082532|ref|YP_002811083.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2]
 gi|229507529|ref|ZP_04397034.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286]
 gi|229512275|ref|ZP_04401754.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33]
 gi|229519411|ref|ZP_04408854.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9]
 gi|229607035|ref|YP_002877683.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236]
 gi|254849531|ref|ZP_05238881.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio
           cholerae MO10]
 gi|255746918|ref|ZP_05420863.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101]
 gi|262161539|ref|ZP_06030649.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1]
 gi|298500231|ref|ZP_07010036.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757]
 gi|20139220|sp|Q9KPF9|RSMH_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504940|sp|C3LQV4|RSMH_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9656982|gb|AAF95552.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548146|gb|EAX58219.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126511044|gb|EAZ73638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520233|gb|EAZ77456.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227010420|gb|ACP06632.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2]
 gi|229344100|gb|EEO09075.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9]
 gi|229352240|gb|EEO17181.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33]
 gi|229355034|gb|EEO19955.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286]
 gi|229369690|gb|ACQ60113.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236]
 gi|254845236|gb|EET23650.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio
           cholerae MO10]
 gi|255735320|gb|EET90720.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101]
 gi|262028850|gb|EEY47504.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1]
 gi|297540924|gb|EFH76978.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757]
          Length = 316

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|210608682|ref|ZP_03287959.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787]
 gi|210152939|gb|EEA83945.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787]
          Length = 311

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 167/311 (53%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
            + +H  VLLE+ +  LN  P  + +D T G GG++             I +D+D  A+ 
Sbjct: 1   MVFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAYEVCKHLNNKGRFIGIDQDEAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                + D+ E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AAGSRLIDFGERVTIVRSNYCDMKSKLQELGIDKVDGIVLDLGVSSYQLDTAERGFSYRV 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN+ +  DL RI+   GE+K A  IA  IV  R+  P +TT
Sbjct: 121 DAPLDMRMDRRQKMTAKDIVNEYSEMDLFRIIRDYGEDKFAKNIAKHIVLEREKGPIETT 180

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I++ +         HPA R+FQA+RI +N E+E L + L    + L   G + +
Sbjct: 181 GQLIEIIKRAIPMKFQKTAGHPAKRTFQAIRIELNRELEVLRESLDDMIELLNKDGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           H       + +  + IT+K ++P+ E++  N RS
Sbjct: 241 ITFHSLEDRIVKGIFRKNENPCTCPPHFPVCVCGNESKGRVITRKPILPSAEELEENSRS 300

Query: 307 RSAKLRAGMRT 317
           +SAKLR   RT
Sbjct: 301 KSAKLRIFERT 311


>gi|315611782|ref|ZP_07886704.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC
           49296]
 gi|315316197|gb|EFU64227.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC
           49296]
          Length = 316

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTAE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|309776027|ref|ZP_07671019.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916309|gb|EFP62057.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 311

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL++ I  L      + +D T G GG+S          ++ A DRD  A+   
Sbjct: 1   MMKHYSVLLQESIDNLAIRSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +       +L  + FS ++   +     G+DG+V DLGVSS Q D   RGFS++   
Sbjct: 61  RERLTRIGSNVTLIHSNFSNVKSELEARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA  VVN+   ++L RI    GEE  A +IA  I K R++ P +TT +
Sbjct: 121 PLDMRMDQSQQLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKARETKPIETTLE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +     N + HPA + FQA+RI VN+E+ EL   LR A   L  GG L V+S
Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQMVLRDALALLHVGGRLCVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK  F + S      + +   P +   A ++ + KK +  T++++  N RS 
Sbjct: 241 FQSLEDRIVKDTFVACSKPKQYDKRLPILPQDMEEAPYRLVNKKPITATEDELRENMRSH 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRCIERI 310


>gi|16759115|ref|NP_454732.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140665|ref|NP_804007.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052857|ref|ZP_03345735.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426162|ref|ZP_03358912.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585689|ref|ZP_03367515.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213858022|ref|ZP_03384993.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|20139004|sp|Q8Z9H4|RSMH_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25302091|pir||AE0517 conserved hypothetical protein STY0140 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501405|emb|CAD01277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136289|gb|AAO67856.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 313

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 120/315 (38%), Positives = 179/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|91776629|ref|YP_546385.1| methyltransferase [Methylobacillus flagellatus KT]
 gi|123078758|sp|Q1GYZ3|RSMH_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91710616|gb|ABE50544.1| methyltransferase [Methylobacillus flagellatus KT]
          Length = 321

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query: 9   MSSAIHH----TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           MS+ I H     +  HV VLLE+ +  L+  P  V +D TFG GG+SR   +       +
Sbjct: 1   MSAGISHVPAAQVSQHVTVLLEEAVEALSIKPDGVYVDGTFGRGGHSRKILEKLGAQGRL 60

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           +ALDRD  A+   Q       +      A  +Q+   +  + VDGV+ DLG+SS QID G
Sbjct: 61  VALDRDLAAIQAAQGIQDARFKIVHSHFAAMAQVLASLNIQQVDGVLLDLGISSPQIDEG 120

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KR 179
           +RGFSF+  GPLDMRM    G +A++ +  A  ++LTR++   GEE+ A +IA AIV +R
Sbjct: 121 ERGFSFRFDGPLDMRMDQSRGQTAAEFIATATEQELTRVIKEYGEERFAKQIARAIVAQR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
                  TT  L+ ++   V   +  +  PATR+FQALRIF+N E+EEL+  L      L
Sbjct: 181 AGGMDISTTGQLAKIVAGAVPKVEPGQ-DPATRTFQALRIFINQELEELSLTLPQCLSLL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQE 298
              G L V+SFHSLEDR+VK+F      +     H     +     + +   + V P+++
Sbjct: 240 APQGRLAVISFHSLEDRIVKRFIRGEQDRDNLPAHFPVRASDLPQPRLVAIGRAVRPSED 299

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           +V  N RSRSA LR   RT 
Sbjct: 300 EVRRNPRSRSAVLRVAERTA 319


>gi|256841653|ref|ZP_05547159.1| MraW methylase [Parabacteroides sp. D13]
 gi|301310871|ref|ZP_07216800.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3]
 gi|256736547|gb|EEU49875.1| MraW methylase [Parabacteroides sp. D13]
 gi|300830934|gb|EFK61575.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3]
          Length = 305

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 166/307 (54%), Gaps = 17/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HVPV+L + +  L+  P  + +D TFG GG+SR   K    G  +   D+D  A     
Sbjct: 8   YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSGGELYGFDQDADA----- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F+  ++ F  L +++        VDG++ DLGVSS   D  DRGFSF+  G
Sbjct: 63  EHNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D
Sbjct: 123 TLDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++
Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAK
Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 299 LRIAEKV 305


>gi|288904625|ref|YP_003429846.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus
           gallolyticus UCN34]
 gi|288731350|emb|CBI12901.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus
           gallolyticus UCN34]
          Length = 316

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  V +DAT G  G+S           ++ A D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYAFDQDQTAIDNAQI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K Q +  +  F  L   +       +DG+++DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA DVVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQARKVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLALVNRKPILPSEEELEVNNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKV 314


>gi|52425730|ref|YP_088867.1| S-adenosyl-methyltransferase MraW [Mannheimia succiniciproducens
           MBEL55E]
 gi|115311583|sp|Q65RX8|RSMH_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52307782|gb|AAU38282.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 322

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 119/324 (36%), Positives = 167/324 (51%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           MS     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MSEQNTFSSPEHITVLLHEAVDGLALKDKGIYIDGTFGRGGHSRLILSKLTENGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++  +E       +F +   +FS +            +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAAAEEI---QDSRFHIEHNSFSAIPYICEKLGLVGKIDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA+  + Q   +DL  +L   GEE+ A RIAHAIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTSKGLSAAQWLQQVTEEDLAWVLKTFGEERFAKRIAHAIVNYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    T+ L+  +            K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVQNGTEPLTRTLPLAELIAQAVPFKDKHKHPATRSFQAIRIFINSELDELESVLHSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
              L   G L V+SFHSLEDR+VK F   +S      + +          +   +  K +
Sbjct: 238 LTVLAPEGRLSVISFHSLEDRMVKHFMRKQSKGESIPKGLPLREDQINRNRTLKVIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P + +V  N RSRSA LR   R 
Sbjct: 298 QPKESEVFANPRSRSAVLRVAERI 321


>gi|169348415|ref|ZP_02866353.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552]
 gi|169293884|gb|EDS76017.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552]
          Length = 309

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 162/309 (52%), Gaps = 8/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + DHV VLL + I  LN     + +D T G GG+S    K     ++   D+D  A+   
Sbjct: 1   MFDHVTVLLNEAIEGLNINEDGIYVDCTLGGGGHSCEILKRLTTGHLYCFDQDYTAIEAA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ + +  + +++  + F  +++ + +     VDG++FDLGVSS Q D G RGFS+    
Sbjct: 61  KKRLSEISDNYTIIYSNFVNIKEKLEELNVHKVDGILFDLGVSSPQFDTGSRGFSYNYDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +    A  +VN  + + L  IL    +EK A RIA  I + R + P +TT +
Sbjct: 121 RLDMRMDINNPLDAYYIVNNWSYEQLVEILFKYADEKFAKRIARKIEQARSNKPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALRI VN+E+    + L+ A   L + G + V++
Sbjct: 181 LVEIIKEAIPAAARRKGGHPAKRTFQALRIAVNDELNVFDRALKDALDLLNSKGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLED++ K  F   +        +     H    ++ I KK +V + E++  N R+ S
Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPEHLLPKYKLINKKAIVASDEELEMNHRAHS 300

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 301 AKLRIIERV 309


>gi|314933355|ref|ZP_07840720.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87]
 gi|313653505|gb|EFS17262.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87]
          Length = 311

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  ++++  + +   + F +L + + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKVVLKEHLHKVTFVHSNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A +++   G + V+
Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNINGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I    +    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|254291793|ref|ZP_04962578.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422305|gb|EDN14267.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 316

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESLGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|306830125|ref|ZP_07463309.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249]
 gi|304427651|gb|EFM30747.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249]
          Length = 316

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLLEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|237654092|ref|YP_002890406.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T]
 gi|237625339|gb|ACR02029.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T]
          Length = 311

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 170/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + +  L        +D TFG GG+SR+  +       +IA DRDP A++ GQ 
Sbjct: 7   HVSVLLSEAVDALAIRADGFYVDGTFGRGGHSRAVLQRLGPQGRLIAFDRDPLAIAAGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + +L  + FS L D +     + VDGV+ DLGVSS Q+D   RG SF+   PL
Sbjct: 66  --GVGDARLTLVHSAFSALDDELARLGVQAVDGVLLDLGVSSPQLDDAARGMSFRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G + ++ + +A+V  +T ++   GEE+ A  IA AI   R      TT  L+
Sbjct: 124 DMRMDTSRGQTVAEWLAEASVGQITEVIREYGEERFAHAIAKAIANARAGGAVATTGQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K V   +  + HPATR+FQALRIF+N E+EEL++ L      L+ GG L V+SFHS
Sbjct: 184 ALVEKAVRTREPGQ-HPATRTFQALRIFINQELEELSRVLPVCVSRLRPGGRLAVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S   +  R +    A     +  +  K + P++ +VA N R+RSA L
Sbjct: 243 LEDRIVKRFMRDESRPPVLPRRLPVRAADLPAPRLQLVGKAMRPSEAEVAANPRARSAVL 302

Query: 312 RAGMRTVER 320
           R   RT   
Sbjct: 303 RVAERTEAP 311


>gi|161612464|ref|YP_001586429.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|204927221|ref|ZP_03218423.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|262826399|sp|A9MZL1|RSMH_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161361828|gb|ABX65596.1| hypothetical protein SPAB_00154 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|204323886|gb|EDZ09081.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615941|gb|EFY12858.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620725|gb|EFY17585.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623923|gb|EFY20760.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627371|gb|EFY24162.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630678|gb|EFY27442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638102|gb|EFY34803.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640588|gb|EFY37239.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647729|gb|EFY44214.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648078|gb|EFY44545.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656890|gb|EFY53176.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657400|gb|EFY53672.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663719|gb|EFY59919.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666552|gb|EFY62730.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672289|gb|EFY68401.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676399|gb|EFY72470.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679508|gb|EFY75553.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686163|gb|EFY82147.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195007|gb|EFZ80193.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200084|gb|EFZ85171.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201095|gb|EFZ86164.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209492|gb|EFZ94425.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212256|gb|EFZ97080.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216561|gb|EGA01287.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323225810|gb|EGA10030.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228648|gb|EGA12777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236738|gb|EGA20814.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239761|gb|EGA23808.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242191|gb|EGA26220.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249385|gb|EGA33301.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252282|gb|EGA36133.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256628|gb|EGA40358.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262997|gb|EGA46547.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265482|gb|EGA48978.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271730|gb|EGA55148.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 313

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|307708181|ref|ZP_07644648.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261]
 gi|307615627|gb|EFN94833.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261]
          Length = 316

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|301300385|ref|ZP_07206587.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851987|gb|EFK79669.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 314

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 166/309 (53%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P    +D T G GG+S            + + D+D  A++  +
Sbjct: 5   KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  ++  E  + +  ++ F  + + +  + +   DG+++DLGVSS Q D  DRGFS+   
Sbjct: 65  DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT 
Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +   ++    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V+
Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F  ++        +    ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 245 TFQSLEDRLVKVMFKQKTNLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRIIEK 313


>gi|163790543|ref|ZP_02184972.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7]
 gi|159874146|gb|EDP68221.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7]
          Length = 318

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 169/312 (54%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +H  VLL + +  L+ +P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 2   TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLNEKGHLYAFDQDDRALE 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +  + +Y  K   +  +A F  ++D + +   K VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 62  NAKIRLAEYVEKGMVTFIKANFRYIKDELANLGIKEVDGILYDLGVSSPQLDEAERGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM     ++A +V+N+ +  DL RI    GEEK + +IA  I   R+    +
Sbjct: 122 HQDAPLDMRMDTDAPLTAKEVINEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKLIE 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  LI+  +    +    HPA R FQA+RI VN+E+  +   L  A + L  GG +
Sbjct: 182 TTSELVELIKAGIPAPARRKGGHPAKRVFQAVRIAVNDELSSVEDSLEQAIELLAIGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK  F   S      R +    +      + IT+K ++P+++++  N 
Sbjct: 242 SVISFHSLEDRIVKSIFKDHSKGPELPRGLPVVPDGFLPELKLITRKPILPSEQELEVNN 301

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLR   +
Sbjct: 302 RSRSAKLRIAEK 313


>gi|322386906|ref|ZP_08060530.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus cristatus ATCC 51100]
 gi|321269188|gb|EFX52124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus cristatus ATCC 51100]
          Length = 316

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I  L+     + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETIDQLDVRSDGIYVDATLGGAGHSEYLLSKLGDKGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIERGMVTFIKDNFRNLKTRLNEVGVEKIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A  VVNQ    DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEAALTAYQVVNQYPYNDLVRIFFKYGEDKFSKQIARKIEQAREIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L  GG + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVGGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLQPKLELVSRKPILPSKEELEANNRAHSA 306

Query: 310 KLRAGMRTVE 319
           KLR   +  E
Sbjct: 307 KLRVARKVHE 316


>gi|323171245|gb|EFZ56893.1| S-adenosyl-methyltransferase MraW [Escherichia coli LT-68]
          Length = 313

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          Q      ++P +E++A N 
Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEMAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|253997377|ref|YP_003049441.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8]
 gi|253984056|gb|ACT48914.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8]
          Length = 360

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 168/315 (53%), Gaps = 15/315 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +  H+ VLL + +  L+  P  + +D TFG GG+SR           +IA DRD  A
Sbjct: 49  SSAVHAHITVLLNEAVRALDIKPNGIYVDGTFGRGGHSRKILAQLGDAGRLIAFDRDLAA 108

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  G+        +F+L  + F+ ++  + +   + VDG++ DLG+SS QID  +RGFSF
Sbjct: 109 IEAGKAI---DDPRFTLVHSHFADMRKRLAELGVQHVDGILLDLGISSPQIDEAERGFSF 165

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPF 185
           +   PLDMRM   SG +A+D + +   + L  ++   GEE+ A  IA   I +R      
Sbjct: 166 RYDAPLDMRMDQSSGETAADFLGRTTEQQLAEVIKNYGEERFAKSIARAIIAERNDGRAI 225

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ ++   V   +  + +PATR+FQALRIFVN E+EEL+  +    + L   G L
Sbjct: 226 TTTGQLAQIVAGAVTRFEPGQ-NPATRTFQALRIFVNQELEELSLTMPQCLELLAPHGRL 284

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++SFHSLEDR+VK+F   +  +     +     ++      +S+  K V P+ E+V  N
Sbjct: 285 AIISFHSLEDRMVKQFIRGQEDRDDLPANFPVRAADLPQPRLKSV-GKAVKPSDEEVRSN 343

Query: 304 RRSRSAKLRAGMRTV 318
            RSRSA LR   RT 
Sbjct: 344 PRSRSAVLRVAERTS 358


>gi|227891048|ref|ZP_04008853.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867137|gb|EEJ74558.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 323

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 166/309 (53%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P    +D T G GG+S            + + D+D  A++  +
Sbjct: 14  KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 73

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  ++  E  + +  ++ F  + + +  + +   DG+++DLGVSS Q D  DRGFS+   
Sbjct: 74  DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 133

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT 
Sbjct: 134 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 193

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +   ++    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V+
Sbjct: 194 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 253

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F    S   +     +  ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 254 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 313

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 314 SAKLRIIEK 322


>gi|30248986|ref|NP_841056.1| methyltransferase family protein [Nitrosomonas europaea ATCC 19718]
 gi|42559461|sp|Q82VT1|RSMH_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|30138603|emb|CAD84894.1| Methyltransferase family [Nitrosomonas europaea ATCC 19718]
          Length = 317

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 18/314 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVPVLLE+    LN     + +DATFG GG+SR           +IA D+DP A+S  +
Sbjct: 1   MHVPVLLEEAADALNIRADGIYVDATFGRGGHSRLILSRLGESGRLIAFDKDPAAISAAR 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  E+F     +++Q++  +       +DG++ DLGVSS+Q+D   RGFSF+  GP
Sbjct: 61  SI---RDERFQAVHGSYAQIRTALESLSVSRIDGILLDLGVSSIQLDEASRGFSFRHDGP 117

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ +      +L  ++   GEE+ A +IA AIV  +   P  TT  L
Sbjct: 118 LDMRMDSSRGKTAAEWLATVTETELKEVIRTYGEERYAGQIAGAIVMAQTRQPIVTTFQL 177

Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++   V  +  ++ R HPATR+FQA+RI +N E+EEL+  L    + L A G L+V+S
Sbjct: 178 AEIVAAVVRKFGHRDGRQHPATRTFQAIRIHLNQELEELSVTLPQCVELLNANGRLVVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK+F   ++G     R +   +           Q I KK + P + +VA N 
Sbjct: 238 FHSLEDRIVKRFMRMQAGTDTLPRKLPVRDEESRMHSRQTLQIIGKK-IRPGENEVAANP 296

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA +R   +  
Sbjct: 297 RARSAVMRVAEKLE 310


>gi|306832860|ref|ZP_07465994.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338]
 gi|304424999|gb|EFM28131.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338]
          Length = 338

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 105/321 (32%), Positives = 166/321 (51%), Gaps = 15/321 (4%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIA 63
           K M++  H     H+ VLL + + +L+  P  + +DAT G  G+S           ++ A
Sbjct: 21  KGMTTDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPTGHLYA 75

Query: 64  LDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQI 118
            D+D  A+   Q  ++DY  K Q +  +  F  L           +DG+++DLGVSS Q+
Sbjct: 76  FDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLVSNLAMHGVTEIDGILYDLGVSSPQL 135

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFS++K   LDMRM+     SA DVVN  +  DL RI    GE+K + +IA  I 
Sbjct: 136 DERERGFSYKKDASLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIE 195

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A 
Sbjct: 196 QARTVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAI 255

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L   G + V++FHSLEDRL K+ F   S   +                 + +K ++P+
Sbjct: 256 ELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLTLVNRKPILPS 315

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           +E++  N RS SAKLR   + 
Sbjct: 316 EEELEVNNRSHSAKLRVARKV 336


>gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
           OCh 114]
 gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
           OCh 114]
          Length = 330

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 145/327 (44%), Positives = 195/327 (59%), Gaps = 7/327 (2%)

Query: 9   MSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66
           MS+A    T   H+PVLL  ++  + P    V LD TFGAGGY+R   + G+  VIA+DR
Sbjct: 1   MSAAATADTTSPHIPVLLPAILDAVAPVQ-GVWLDGTFGAGGYTRGLLEAGADRVIAVDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A     +    Y  +       FS++  Y     +DGVV DLGVSSMQ+D  +RGFS
Sbjct: 60  DPLAFEMAADWAGSYGTRLVQQPGVFSEMDTY--AVALDGVVLDLGVSSMQLDLAERGFS 117

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F + GPLDMRMS  G SA+D+VN+A+ + L  IL   GEE+ + RIA AI+  R  AP  
Sbjct: 118 FMRDGPLDMRMSQEGPSAADIVNEASAETLANILFQYGEERASRRIAKAILTERALAPIT 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+ +I++ +  +K  + HPATRSFQALRI VN+E  EL QGL +AE+ALK GG L 
Sbjct: 178 TTLHLAGIIERCLPRAKPGQSHPATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLA 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           VV+FHS+EDR+VK+F  +R+G                  F   ++K +V    +VA N R
Sbjct: 238 VVTFHSVEDRMVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADDAEVAANPR 297

Query: 306 SRSAKLRAGMRTVERS-IEDDSFVHLP 331
           +RSAKLR  +RT   + + D   V +P
Sbjct: 298 ARSAKLRIAVRTQAPAGVIDAKSVGMP 324


>gi|332976270|gb|EGK13132.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Desmospora sp. 8437]
          Length = 317

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  V+ E+ +  L   PG + +D T G  G+S    +       +I LD+D  A+  
Sbjct: 1   MFRHETVMREEAVDGLLVRPGGIYVDCTLGGAGHSLLIAERLGKDGILIGLDQDDRALQA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             + ++    Q  L ++ F +L++ +       VDGV+FD+GVSS Q+D G+RGFS+Q  
Sbjct: 61  ASDRLKGADCQVHLIKSNFRRLEEVLGRLGLDRVDGVLFDIGVSSPQLDEGERGFSYQHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   G  +A DVVN  + +++  IL   GEEK + RIA  IV+ R   P +TT 
Sbjct: 121 APLDMRMDPDGELTARDVVNDWSEEEIAHILFRYGEEKFSRRIARKIVETRSQYPIETTG 180

Query: 190 DLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+++I++ +      +  HPA RSFQA+RI VN+E+    +GL  A ++L +GG + V+
Sbjct: 181 ELAAVIKEGIPAPARRKGPHPARRSFQAIRIAVNDELNAFEEGLEQAVRSLNSGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+FF  ++   +        +       + ITKK + P+  +   N R+R
Sbjct: 241 TFHSLEDRICKRFFQEKARGCICPPDFPVCTCGKTPELRIITKKSLQPSAAETGRNPRAR 300

Query: 308 SAKLRAGMRTVE 319
           SA+LR   +  E
Sbjct: 301 SARLRIAEKCEE 312


>gi|325205481|gb|ADZ00934.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M04-240196]
          Length = 328

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 15/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R   +  ++      + + +  + P + +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAE 294

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           +A N R+RSA LR   RT     E
Sbjct: 295 IAANPRARSAVLRVAERTAGPIPE 318


>gi|146310292|ref|YP_001175366.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638]
 gi|263447009|sp|A4W6I5|RSMH_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145317168|gb|ABP59315.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638]
          Length = 313

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 17/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTSVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS     FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---DDPRFSFVHGPFSALADYVSERDLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  ++   GEE+   RIA  IV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLLTAEEADIAWVIKTFGEERFGKRIARGIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L +
Sbjct: 180 TKELAEVVTAAT-PVKDKFKHPATRTFQAVRIWVNSELEEIELALKSSLGVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F   +S        +  +             +  K ++P +E+VA N
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEDQLRKLGGRYLRVLGK-MMPGEEEVAEN 297

Query: 304 RRSRSAKLRAGMRTVE 319
            R+RS+ LR   RT  
Sbjct: 298 PRARSSVLRIAERTNA 313


>gi|283835144|ref|ZP_06354885.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220]
 gi|291069444|gb|EFE07553.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220]
          Length = 313

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAKTI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAAMPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGKMMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|90962030|ref|YP_535946.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius UCC118]
 gi|122448863|sp|Q1WT95|RSMH_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|90821224|gb|ABD99863.1| S-adenosyl-methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214731|gb|ADJ79147.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus salivarius CECT 5713]
          Length = 314

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P    +D T G GG+S            + + D+D  A++  +
Sbjct: 5   KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   +  E  + +  ++ F  + + +  + +   DG+++DLGVSS Q D  DRGFS+   
Sbjct: 65  DKFEEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT 
Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +   ++    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V+
Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F    S   +     +  ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 245 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRIIEK 313


>gi|222151001|ref|YP_002560154.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus
           JCSC5402]
 gi|263456379|sp|B9EB47|RSMH_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222120123|dbj|BAH17458.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus
           JCSC5402]
          Length = 310

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  HV VLLE+ +  LN  P  + +D T G  G+S    K     ++I++D+D  A+   
Sbjct: 1   MFHHVTVLLEETVDQLNIDPNGIYVDCTLGGAGHSLYLVKQLQEGHLISIDQDQTAIDNA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++DY ++ +  +  F  L D +     + VDG+++DLGVSS Q+D G+RGFS+ +  
Sbjct: 61  HIILKDYLDKVTFVKDNFRNLSDILAHLDIQKVDGILYDLGVSSPQLDVGERGFSYHQEA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA +VVN    + L  I    GEEK + +IA  I   R+  P +TT +
Sbjct: 121 KLDMRMDQTQTLSAYEVVNTWPYEKLVSIFFRYGEEKFSKQIARKIEAERELKPIETTTE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+      +  A  ++K GG + V++
Sbjct: 181 LVEIIKAAIPAPARRTGGHPAKRVFQAIRIAVNDELGAFESSIEQAIDSVKPGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S      R +      +    + IT+K +  + E++  N R+RS
Sbjct: 241 FHSLEDRLCKQVFQEYSKGPDIPRGLPVVPPEYQPKLKKITRKPITSSNEELEHNNRARS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVVE 307


>gi|167630120|ref|YP_001680619.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum
           Ice1]
 gi|263456105|sp|B0TGB2|RSMH_HELMI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167592860|gb|ABZ84608.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum
           Ice1]
          Length = 313

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 179/312 (57%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +  H+PVLL +V+ +L P P  V LD T G GG+S +  +       VI LD+DP A++
Sbjct: 1   MVFHHIPVLLHQVLEVLKPRPEGVYLDGTVGGGGHSAAILQKLSGRGRVIGLDQDPAALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                +  + ++ +L ++ F  +   V +      +DG++ D+GVSS Q+D  +RGF+++
Sbjct: 61  AAGRKLASFGDRVTLVRSNFRHIGAVVAELGLTGKIDGILLDIGVSSHQLDEAERGFTYR 120

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
              PLDMRM+     +AS ++N+A   ++ RIL   GEE+ A RIA  IVKRR   P + 
Sbjct: 121 MDAPLDMRMNPESALTASKLLNEAPEGEIARILRDYGEERWAKRIAQFIVKRRALQPLER 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T + +  +       ++    HPA R+FQALRI VN+E+  L + L +A +AL  GG L 
Sbjct: 181 TGELVDIIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALEEALPAALEALAPGGRLA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+SFHSLEDR+VK FFA ++   +        +  +    + ITKK +V + E++  N R
Sbjct: 241 VISFHSLEDRIVKSFFAEQARGCLCPPDFPVCACGNRPKVKIITKKPLVGSDEEMRANPR 300

Query: 306 SRSAKLRAGMRT 317
           ++SAKLRA  + 
Sbjct: 301 AQSAKLRAAEKI 312


>gi|313884959|ref|ZP_07818711.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619650|gb|EFR31087.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 318

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 179/312 (57%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + I  L+  P  + +D T G  G++     +     ++ A D+D  A+ 
Sbjct: 2   ENFKHTSVLLHETIDQLDINPNGIYVDCTLGGAGHAAYLLSLLSPKGHLYAFDQDMNAIK 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127
             Q+ + DY  K+Q +   A F+QL++ + ++GV     + +DLGVSS Q+D  +RGFS+
Sbjct: 62  NAQDRLHDYIEKDQVTFIHANFAQLKEQLAERGVSYVDGIYYDLGVSSPQLDQAERGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +K  PLDMRM+     +A ++VN+   + + +I+   GEE+ A RI  AI + R++ P +
Sbjct: 122 KKEAPLDMRMNQEDKLTAYEIVNEWPYEKIVKIIDHYGEERFAKRITRAIEQARKNKPIE 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ ++++ +   ++ +  HPA R+FQA+RI VN+E+  +   L  A   LK GG +
Sbjct: 182 TTLELAEIVKEAIPAATRRSGGHPAKRTFQAIRIAVNDELNVIETSLNQAFTLLKVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+ F  +S +     ++        A F  + +K ++ +QE++  N 
Sbjct: 242 SVISFHSLEDRIVKQLFRDKSSRPDLPPNLPILPERTEADFALVNRKPILASQEELDENN 301

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLR   R
Sbjct: 302 RSRSAKLRVIQR 313


>gi|148994362|ref|ZP_01823605.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP9-BS68]
 gi|147927293|gb|EDK78326.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP9-BS68]
          Length = 316

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQVRLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARDVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ +   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQSMDMLTLDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|306830621|ref|ZP_07463786.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427129|gb|EFM30236.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 324

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/321 (33%), Positives = 169/321 (52%), Gaps = 15/321 (4%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIA 63
           K M++  H     H+ VLL + + +L+  P  V +DAT G  G+S           ++ A
Sbjct: 7   KGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGTTGHLYA 61

Query: 64  LDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
            D+D  A+   Q  ++DY  K Q +  +  F  L   +       +DG+++DLGVSS Q+
Sbjct: 62  FDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQL 121

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFS++K  PLDMRM+     SA +VVN  +  DL RI    GE+K + +IA  I 
Sbjct: 122 DERERGFSYKKDAPLDMRMNRDQDLSAYNVVNTYDYHDLVRIFFKYGEDKFSKQIARKIE 181

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A 
Sbjct: 182 QARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAI 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L   G + V++FHSLEDRL K+ F   S   +                 + +K ++P+
Sbjct: 242 ELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLALVNRKPILPS 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           +E++  N RS SAKLR   + 
Sbjct: 302 EEELEVNNRSHSAKLRVARKV 322


>gi|325977602|ref|YP_004287318.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177530|emb|CBZ47574.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 324

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/321 (33%), Positives = 169/321 (52%), Gaps = 15/321 (4%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIA 63
           K M++  H     H+ VLL + + +L+  P  V +DAT G  G+S           ++ A
Sbjct: 7   KGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYA 61

Query: 64  LDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
            D+D  A+   Q  ++DY  K Q +  +  F  L   +       +DG+++DLGVSS Q+
Sbjct: 62  FDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQL 121

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFS++K  PLDMRM+     SA DVVN  +  DL RI    GE+K + +IA  I 
Sbjct: 122 DERERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIE 181

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A 
Sbjct: 182 QARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAI 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L   G + V++FHSLEDRL K+ F   S   +                 + +K ++P+
Sbjct: 242 ELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLALVNRKPILPS 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           +E++  N RS SAKLR   + 
Sbjct: 302 EEELEVNNRSHSAKLRVARKV 322


>gi|332203501|gb|EGJ17568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA47368]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   QE
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQE 66

Query: 77  TMR--DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLALYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|183599909|ref|ZP_02961402.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827]
 gi|188022184|gb|EDU60224.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/318 (37%), Positives = 164/318 (51%), Gaps = 16/318 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLNEQGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A+   QE       +F +    FS + +YV ++     +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQEI---DDPRFMIKHGPFSAIAEYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA   +  A   D+  +L   GEE+ A RIA AIV+R  +  
Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMNAQADDIAWVLKTFGEERFAKRIAKAIVERNHNPE 177

Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T     + +   V   K    HPATRSFQA+RI++N+E+EE+ Q L  A   L   
Sbjct: 178 ETPLTRTRELAELIAKVSPIKERHKHPATRSFQAIRIYINSELEEIEQALEGAVSVLAPE 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQED 299
           G L V+SFHSLEDRLVK+F    S        +  + A        +      + P+  +
Sbjct: 238 GRLSVISFHSLEDRLVKRFIRQNSKGPSVPAGIPLTEAQIRELGVAKLREVGKMKPSDAE 297

Query: 300 VAFNRRSRSAKLRAGMRT 317
           +  N R+RS+ LR   RT
Sbjct: 298 IDENPRARSSVLRFAQRT 315


>gi|319424760|gb|ADV52834.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens 200]
          Length = 313

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 169/314 (53%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV D      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--SDDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIVR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK+F    S        +  +       + +    K ++P+ E++  
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|119944895|ref|YP_942575.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37]
 gi|262825199|sp|A1SU11|RSMH_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119863499|gb|ABM02976.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37]
          Length = 315

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/317 (39%), Positives = 182/317 (57%), Gaps = 12/317 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  L      + +D TFG GG+SR           +IA+DRDP A+  
Sbjct: 1   MAKHTTVLLDEAVNGLGLKTDGIYVDGTFGRGGHSRHILGQLGAQGRLIAIDRDPRAIET 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G+  M++   +F++    FS L +Y+ +      +DGV+ DLGVSS QID  DRGFSF +
Sbjct: 61  GEALMKE-DPRFTIIHGPFSGLAEYIKELGLAGQIDGVLLDLGVSSPQIDDADRGFSFMR 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  + GISA+  + +A+V D+  +L   GEEK A RIA AIV  R   PF  T
Sbjct: 120 DGPLDMRMDPTSGISAAQWLAKADVDDIGWVLKTFGEEKFAFRIARAIVADRTETPFLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI++ +   +  + HPATRSFQA+RI+VN+E+EE+ + L  A + L  GG L V+
Sbjct: 180 LQLAQLIER-LCPKREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALEILAIGGQLSVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F   +         +  + A     +++    K + P+ E++  N R+
Sbjct: 239 SFHSLEDRIVKRFIRKQEKGREYPPGLPLTEAQMQHGKTLKSLAKALKPSAEEINENTRA 298

Query: 307 RSAKLRAGMRTVERSIE 323
           RS+ LR   +  E   E
Sbjct: 299 RSSVLRVAQKIAEPESE 315


>gi|325128828|gb|EGC51687.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis N1568]
          Length = 328

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 169/323 (52%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +   + +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVVSEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|237738334|ref|ZP_04568815.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC
           9817]
 gi|229420214|gb|EEO35261.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC
           9817]
          Length = 313

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL  + I  L      V LD T G GG+S    K      ++I++D+D  A+   +
Sbjct: 8   YHIPVLYRECIDNLVINKDGVYLDCTLGGGGHSEGILKELSDKGHLISIDQDQQAIDFAK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y +++ +F+  F  L   +   G D    ++ D+GVSS Q+D  +RGFS++    
Sbjct: 68  KRLEKYGKKWQVFKNNFENLDMVLYMAGYDKVDGILMDIGVSSTQLDDPERGFSYRYDTR 127

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S   SA +VVN+   + L +I+   GEE+ A +IA  I + R     +TT +L
Sbjct: 128 LDMRMNRSNPLSAYEVVNEYPEEKLAKIIFEYGEERNARKIAKFICEARTEKNIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   + +  + HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FH
Sbjct: 188 VAIIKRA--YPERAQKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +          I      A  + IT+K +VP  E+V FN R+ S+K
Sbjct: 246 SLEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITRKPIVPEGEEVEFNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRVVERI 312


>gi|225860373|ref|YP_002741882.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|303255210|ref|ZP_07341284.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455]
 gi|262825688|sp|C1CPL0|RSMH_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225727237|gb|ACO23088.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|302597843|gb|EFL64915.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + + +K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVARKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|258620868|ref|ZP_05715902.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573]
 gi|258586256|gb|EEW10971.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q        +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQNI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +   + P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|168333718|ref|ZP_02691971.1| S-adenosyl-methyltransferase MraW [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 311

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H+ VLL + I  LN     + +D T G  G++   C+       ++ +D+D  A++
Sbjct: 1   MEFNHISVLLNECIEGLNIKTNGIYVDGTLGGAGHATEICRHLNSEGTLVGIDQDAIAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  + +   +  + +  F+ +   + +     +DG++ DLGVSS Q+D  +RGFS+ +
Sbjct: 61  TAEARLAEAANRVLVIKXNFANVDAVLEELEIDKIDGMLLDLGVSSYQLDEAERGFSYMR 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM+     SA DVVN     +L  ++   GEEK A RIA  IV+ R S+   TT
Sbjct: 121 DAKLDMRMNQDAKFSAFDVVNSYTEDELAVVIKNFGEEKWARRIAKFIVEARASSSIDTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +  + +    HPA R+FQA+RI VN EI+ +A  ++     L  GG L +
Sbjct: 181 YELVEIIKKAIPKAARLEGGHPAKRTFQAIRIEVNKEIDIIAPAIKEIVAHLNVGGRLAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           +         +  + ITKK ++P+++++  N RS
Sbjct: 241 ITFHSLEDRIVKHTFRELENPCTCPSNFPICVCNKKSQVKVITKKPILPSEQELENNSRS 300

Query: 307 RSAKLRAGMRT 317
           +SAKLR   + 
Sbjct: 301 KSAKLRIVEKI 311


>gi|114327101|ref|YP_744258.1| S-adenosyl-methyltransferase MraW [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327917|sp|Q0BV17|RSMH_GRABC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114315275|gb|ABI61335.1| S-adenosyl-methyltransferase mraW [Granulibacter bethesdensis
           CGDNIH1]
          Length = 334

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 139/310 (44%), Positives = 188/310 (60%), Gaps = 9/310 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           H + G HVPVLL +V+  L+PAPG V LD TFG GGY+R+       S V A+DRDP A+
Sbjct: 18  HSSTGTHVPVLLNEVLETLSPAPGGVFLDGTFGGGGYTRAILDTAEDSTVWAVDRDPAAI 77

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128
           + G+     Y+ +  L Q  FSQ+   + D+GV+    +V D+GVSS QID  DRGFSF+
Sbjct: 78  TRGEALAARYRGRLHLIQGNFSQMASLLTDRGVNALDGIVLDIGVSSFQIDDPDRGFSFR 137

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM+  G SA+D++ +    ++  IL  LGEE+++ +IA AIV  R   P  TT
Sbjct: 138 TDGPLDMRMAGEGTSAADLIARLPEAEIANILYELGEERKSRQIARAIVSARAEEPITTT 197

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+S+I+  V   + + I PATRSFQALRI VN+E+ EL + L+ A   L+ GG L++V
Sbjct: 198 GRLASIIRCVVPPDR-SGIDPATRSFQALRIAVNDELGELERALQQATNLLQPGGRLVIV 256

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+F    +G   +     P          F+ IT K V P   +   N R
Sbjct: 257 SFHSLEDRIVKRFMNDAAGNAPSPSRYDPRGLVARTEPRFRLITSKAVRPGTAEQNANPR 316

Query: 306 SRSAKLRAGM 315
           SRSA+LRA  
Sbjct: 317 SRSARLRAIE 326


>gi|325134878|gb|EGC57511.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M13399]
          Length = 328

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|223933600|ref|ZP_03625580.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591]
 gi|253752421|ref|YP_003025562.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84]
 gi|253754247|ref|YP_003027388.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7]
 gi|253756181|ref|YP_003029321.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407]
 gi|302024366|ref|ZP_07249577.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05HAS68]
 gi|330833363|ref|YP_004402188.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3]
 gi|262827260|sp|C6GW75|RSMH_STRS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827309|sp|C5VZR6|RSMH_STRSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827338|sp|C6GPU1|RSMH_STRSX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831434|sp|A4VX71|RSMH_STRSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831441|sp|A4W3H4|RSMH_STRS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223897726|gb|EEF64107.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591]
 gi|251816710|emb|CAZ52352.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84]
 gi|251818645|emb|CAZ56480.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407]
 gi|251820493|emb|CAR47246.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7]
 gi|319758827|gb|ADV70769.1| S-adenosyl-methyltransferase MraW [Streptococcus suis JS14]
 gi|329307586|gb|AEB82002.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + + +L+  P  + +DAT G  G+S         G ++ A D+D  A+    
Sbjct: 6   NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 65

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y  K Q +  +  F  L+  + +     +DG+ +DLGVSS Q+D  +RGFS+++ 
Sbjct: 66  IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 125

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  G  +A DVVN  +  DL RI    GE+K + +IA  I + R   P +TT 
Sbjct: 126 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 185

Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 186 ELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDRL K+ F   S   +        +   A  + + +K ++P+QE++  N R+ S
Sbjct: 246 TFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPILPSQEELEANNRAHS 305

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 306 AKLRVAKKV 314


>gi|319408832|emb|CBI82489.1| S-adenosyl-methyltransferase [Bartonella schoenbuchensis R1]
          Length = 356

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 166/331 (50%), Positives = 221/331 (66%), Gaps = 6/331 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
               H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G++VIALDRDP A+  GQ
Sbjct: 24  ETESHIPVLLQPVLAALVPLAGAKVIDGTFGAGGYTRALLDAGADVIALDRDPHAIREGQ 83

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  +  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDM
Sbjct: 84  LLVDQFFPRLRLVQMEFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDM 142

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM+ +G +ASDVVN   V +L+ +  +LGEE+ A RIA  I KRR+  PF  T DL++ I
Sbjct: 143 RMAQTGFTASDVVNCLKVNELSHMFRVLGEERHAGRIARMIEKRRRIRPFLRTCDLANAI 202

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V     +RIHPATR FQALRI+VN+E+ EL +GL +AEK LKAGG L VVSFHSLED
Sbjct: 203 EVLVGRKPGDRIHPATRVFQALRIYVNDELGELTRGLLAAEKVLKAGGRLGVVSFHSLED 262

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VKKFF++RSG+    R++    + PA F  + K V    +E+V  N R+RSAKLR G+
Sbjct: 263 RIVKKFFSARSGEGGRSRYLPEIKSSPATFLPLFKGVKTANEEEVQKNPRARSAKLRVGI 322

Query: 316 RTVE---RSIED--DSFVHLPRLPTLSQFRG 341
           RT E   R+ ED   + + L  L  ++ F+G
Sbjct: 323 RTQEDVIRTQEDVIKADMELFGLAEITSFKG 353


>gi|315652174|ref|ZP_07905171.1| exopolyphosphatase [Eubacterium saburreum DSM 3986]
 gi|315485569|gb|EFU75954.1| exopolyphosphatase [Eubacterium saburreum DSM 3986]
          Length = 311

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
              +H  VLL++VI  LN  P    +D T G  G++    K   G  +I +D+D  A+  
Sbjct: 1   MNFNHKSVLLDEVIESLNIKPDGYYVDGTLGGAGHALEVIKRLKGGRLIGIDQDADAIKA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E + DYK +  + +  +  ++D +       VDG+  DLGVSS Q+D  DRGF+++  
Sbjct: 61  ATERLIDYKNRVIIVRDNYVNIEDILKREGIDKVDGIYVDLGVSSYQLDTADRGFTYRFD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       ASD+VN  +  +L  ++   GE++ A  IA  IV+ R     +TT 
Sbjct: 121 APLDMRMDDRNELKASDIVNNYSEAELFHVIRDYGEDRFAKNIAKHIVEYRNKKKIETTF 180

Query: 190 DLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +         HPA R+FQA+RI +N E+E L   +    + LK GG L V+
Sbjct: 181 ELVDIIKSAIPMKIQVTGGHPAKRTFQAIRIELNKELEVLKDSIDVMIELLKPGGRLSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+ F       +  +        + +  + IT+K V+P++E++  N R++
Sbjct: 241 TFHSLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAVLPSKEELEENSRAK 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVFEK 309


>gi|37527526|ref|NP_930870.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|42559441|sp|Q7N139|RSMH_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|36786961|emb|CAE16035.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 314

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 171/320 (53%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MANSHFKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS+L  Y         +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIEVAKAI---TDPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV   Q  P
Sbjct: 118 SFMRDGPLDMRMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T+ L+ LI +     K    HPAT+SFQA+RI++N+E+EE+ Q L  A + L   G 
Sbjct: 178 ITRTKALADLIAQA-SPIKEKHKHPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  +            +SI K  + P++E+
Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGK--MKPSEEE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   +  E
Sbjct: 295 VADNPRARSSVLRFAEKVSE 314


>gi|332362961|gb|EGJ40750.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK49]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+C    +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNCDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|325288822|ref|YP_004265003.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964223|gb|ADY55002.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 310

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 164/310 (52%), Gaps = 8/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H  VLL++ +  +        +D TFG GG+SR   +  S    +IA D+D  A  
Sbjct: 1   MAFEHTSVLLKETVDSVLTKADGTYVDCTFGGGGHSRLLLEKLSDQAKLIAFDQDEKAYL 60

Query: 73  CGQETMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      K    F           D      V G++FDLGVSS Q+D  +RGFS++  
Sbjct: 61  NARCRFAGDKRVIFFRRNFVHMENTLDTEGLLPVTGIMFDLGVSSPQLDEAERGFSYRHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   SA+++VN  +  +LTRI+   GEEK ASRI+  IV+ R+    +TT 
Sbjct: 121 APLDMRMDRSAEFSAAELVNGWDEAELTRIIRAYGEEKWASRISKFIVEARKEQEIKTTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  V    +    HPA R+FQALRI VN E++ LA+ L  A + L +GG L V+
Sbjct: 181 RLVEIIKAAVPAGARKEGPHPAKRTFQALRIAVNRELDVLAEALDQALRCLDSGGRLAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR VK+      G+    +     +    A  + IT+K V+P+ E++  N RSR
Sbjct: 241 TFHSLEDRTVKEKILEWLGRCTCPQGFPVCTCGARAQVKQITRKPVIPSNEEIENNPRSR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVVEKI 310


>gi|257467026|ref|ZP_05631337.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 313

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  +
Sbjct: 8   YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + +Q+S+FQ  F  +           VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 68  KRLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 127

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +        +        A  + +TKK ++P+++++  N R+ S+K
Sbjct: 246 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 305

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 306 LRVVERLA 313


>gi|120597213|ref|YP_961787.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1]
 gi|146291586|ref|YP_001182010.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32]
 gi|262826531|sp|A4Y2M8|RSMH_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826576|sp|A1REY8|RSMH_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120557306|gb|ABM23233.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1]
 gi|145563276|gb|ABP74211.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32]
          Length = 313

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV D      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--SDDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  +  A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK+F    S        +  +       + +    K ++P+ E++  
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|15676324|ref|NP_273460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis MC58]
 gi|20139199|sp|Q9K0Z0|RSMH_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|7225634|gb|AAF40850.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325140926|gb|EGC63433.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis CU385]
          Length = 328

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + RIA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|121635455|ref|YP_975700.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis FAM18]
 gi|262825519|sp|A1KVM4|RSMH_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120867161|emb|CAM10928.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|325132957|gb|EGC55634.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M6190]
 gi|325138945|gb|EGC61495.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ES14902]
 gi|325144950|gb|EGC67233.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240013]
          Length = 328

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|34499806|ref|NP_904021.1| S-adenosyl-methyltransferase MraW [Chromobacterium violaceum ATCC
           12472]
 gi|42559445|sp|Q7NPZ1|RSMH_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34105656|gb|AAQ62010.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 320

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 10/322 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL + +  L   P  V +D TFG GG+SR           +IA D+DP 
Sbjct: 1   MSTPTFVHRTVLLTEAVDALAIRPDGVYVDCTFGRGGHSRLILSKLGPSGRLIAFDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   + +     +F++    F  L   +      GVDGV+ DLGVSS QID G RGFS
Sbjct: 61  AIAVA-DRLAAEDSRFNIVHNGFETLSAELARLGVAGVDGVLMDLGVSSPQIDDGSRGFS 119

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G++A++ +  A+  D+  ++   GEE+ A +IA AIV +R  +P 
Sbjct: 120 FRFDAPLDMRMDTTRGVTAAEWLATADEADIREVIKTYGEERFARKIAAAIVAQRDESPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT++L+ L+ + V   +  +  PATR+FQA+RIFVN E++EL   L  A + L  GG L
Sbjct: 180 TTTRELAVLVGQNVRTREPGQ-DPATRTFQAIRIFVNRELDELKAVLPQAARLLNEGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK +    S +       M+ +         +  K +    E+V  N 
Sbjct: 239 AVISFHSLEDRIVKLYLRDVSSEEKLPAWAMVRAADMAQPPIDLVGKAIRAGDEEVRENP 298

Query: 305 RSRSAKLRAGMRTVERSIEDDS 326
           R+RSA +R   RT     E D+
Sbjct: 299 RARSAIMRVAQRTAAPWREGDA 320


>gi|169832477|ref|YP_001693854.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Hungary19A-6]
 gi|262826832|sp|B1I953|RSMH_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168994979|gb|ACA35591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 316

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQEREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQ++RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQSIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|58337113|ref|YP_193698.1| S-adenosyl-methyltransferase MraW [Lactobacillus acidophilus NCFM]
 gi|227903687|ref|ZP_04021492.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|68565411|sp|Q5FKV7|RSMH_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58254430|gb|AAV42667.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227868574|gb|EEJ75995.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 315

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 160/314 (50%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS- 72
               H  VLL + I  L P    + +DATFG GG+++          +I  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNDGLYVDATFGGGGHAKYLLSKIDTGTLIGFDQDEYAIKS 60

Query: 73  ----CGQETMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
                      D + +  L    FS L++         G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AELNFANLLKPDSEPKLQLVHDNFSNLEENLVKLGYTDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM+      A  +VN  + K+L  IL   G+EK + +IAH IV++R+  
Sbjct: 121 FSYRYNARLDMRMNQDQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHKIVEKRKEK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I+  +    +    HPA +SFQALR+ VN+E++ L   L  A K L+ G
Sbjct: 181 PIVTTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +        +      + + +K +V +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFIPDDMKPTLKLVNRKPIVASDSELEN 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|262831557|sp|A9M2I4|RSMH_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 328

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 171/323 (52%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|322377105|ref|ZP_08051597.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334]
 gi|321281818|gb|EFX58826.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334]
          Length = 316

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L   P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLEVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|15601999|ref|NP_245071.1| S-adenosyl-methyltransferase MraW [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|20139143|sp|Q9CPB4|RSMH_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12720349|gb|AAK02218.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 321

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 172/323 (53%), Gaps = 18/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   H +   H+ VLL + +A L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNDKDHFSSPAHITVLLNEAVAGLALKEKGIYIDGTFGRGGHSRLILSRLADNGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++  +        +F +   +FS +            VDG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAKTI---QDPRFHIEHRSFSDIPRICERLNLVGKVDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SAS+ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSEQDLAWVLKTFGEERFAKRIAQAIVNYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           + A    T+ LS  +Q           K+   HPATRSFQA+RIF+N E++EL   L+SA
Sbjct: 178 KQALQHGTEPLSRTLQLAELIANAVPFKDKHKHPATRSFQAIRIFINAELDELESVLKSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293
            + L   G L ++SFHSLEDR+VK F   +S      + +   +      Q   +  K +
Sbjct: 238 VQVLAPQGRLAIISFHSLEDRMVKHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +PT+++   N RSRSA LR   +
Sbjct: 298 MPTEQEQQQNPRSRSAVLRVAEK 320


>gi|153854700|ref|ZP_01995950.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814]
 gi|149752804|gb|EDM62735.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814]
          Length = 311

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++   C+      ++I +D+D  A+    
Sbjct: 4   EHKSVLLNETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIIGIDQDEAAIEAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  VRLKDFGEKVTIIRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  IV  R + P +TT  L
Sbjct: 124 LDMRMDRRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAARGTNPIETTGQL 183

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+ ++      +  HPA R+FQA+RI +N E++ L   L    + L  GG L +++F
Sbjct: 184 TEIIRASIPMKYQKKSGHPAKRTFQAIRIELNRELDVLKNSLDDMIEILNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F                     +    +T+K ++P++E++ +N RS+SA
Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPPDFPVCVCGKVSKGCVVTRKPILPSEEELEYNSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|146319398|ref|YP_001199110.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05ZYH33]
 gi|146321602|ref|YP_001201313.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 98HAH33]
 gi|145690204|gb|ABP90710.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus suis 05ZYH33]
 gi|145692408|gb|ABP92913.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus suis 98HAH33]
 gi|292559026|gb|ADE32027.1| methyltransferase [Streptococcus suis GZ1]
          Length = 323

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + + +L+  P  + +DAT G  G+S         G ++ A D+D  A+    
Sbjct: 13  NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 72

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y  K Q +  +  F  L+  + +     +DG+ +DLGVSS Q+D  +RGFS+++ 
Sbjct: 73  IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 132

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  G  +A DVVN  +  DL RI    GE+K + +IA  I + R   P +TT 
Sbjct: 133 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 192

Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 193 ELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVI 252

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDRL K+ F   S   +        +   A  + + +K ++P+QE++  N R+ S
Sbjct: 253 TFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPILPSQEELEANNRAHS 312

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 313 AKLRVAKKV 321


>gi|332366385|gb|EGJ44136.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK355]
          Length = 316

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|320547904|ref|ZP_08042187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus equinus ATCC 9812]
 gi|320447444|gb|EFW88204.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus equinus ATCC 9812]
          Length = 319

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q 
Sbjct: 10  HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPNGHLYAFDQDQTAIDNAQI 69

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K Q +  +  F  L   +       +DG+++DLGVSS Q+D  +RGFS++K  
Sbjct: 70  RLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 129

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A DVVN  +  DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 130 PLDMRMNREQDLTAYDVVNTYDYHDLVRIFYKYGEDKFSKQIARKIEQARQVKPIETTTE 189

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 190 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLVVDGRISVIT 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +        + +K ++P+QE++  N RS SA
Sbjct: 250 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLALVNRKPILPSQEELEANNRSHSA 309

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 310 KLRVARKV 317


>gi|320084363|emb|CBY94156.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 346

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 36  ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 95

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 96  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 152

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 153 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 212

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 213 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 271

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N 
Sbjct: 272 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 331

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 332 RARSSVLRIAERTNA 346


>gi|197105793|ref|YP_002131170.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1]
 gi|262824815|sp|B4RFS8|RSMH_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|196479213|gb|ACG78741.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 310

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/311 (45%), Positives = 193/311 (62%), Gaps = 5/311 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
               HVPVL+++V+  L PAPG+ I+D TFGAGGY+R+    G++V+A DRDP      +
Sbjct: 1   MTTPHVPVLMQEVVDALAPAPGRTIIDGTFGAGGYTRAILATGASVVAFDRDPTVRRFAE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               D   +F L +A FS++ + + +   DGV  DLGVSSMQ+D  +RGFSF + GPLDM
Sbjct: 61  GLPAD---RFRLVEARFSEMDEVLGEGAADGVALDLGVSSMQLDQAERGFSFMQDGPLDM 117

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG +A+D+VN A   +L RI  + GEE+++ RIA AI +RR+  PF  T +L+  I
Sbjct: 118 RMGASGPTAADLVNTAEPAELARIFFVYGEERESRRIARAIARRREEQPFTRTLELADFI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +K +   +  +IHPATR+FQ LRI VN E+ EL  GL +AE+ LK  G L VV+FHSLED
Sbjct: 178 EKALGGRRGAKIHPATRAFQGLRIAVNEELSELEAGLAAAERVLKPEGRLCVVTFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK F + R+G+  A               FQ +      P++ +VA N R+RSAKLRA
Sbjct: 238 RIVKSFLSVRAGRTPAGSRHAPPVRQGPAPSFQLLFNGARGPSETEVAANPRARSAKLRA 297

Query: 314 GMRTVERSIED 324
            +RT      D
Sbjct: 298 AVRTDAPVWRD 308


>gi|259501653|ref|ZP_05744555.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners DSM 13335]
 gi|302191140|ref|ZP_07267394.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners AB-1]
 gi|259166938|gb|EEW51433.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners DSM 13335]
          Length = 315

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 1   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|150009093|ref|YP_001303836.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC
           8503]
 gi|167011834|sp|A6LEV0|RSMH_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149937517|gb|ABR44214.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC
           8503]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 17/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPV+L + +  L+  P  + +D TFG GG+SR   K   +   +   D+D  A     
Sbjct: 8   YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA----- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F+  ++ F  L +++        VDG++ DLGVSS   D  DRGFSF+  G
Sbjct: 63  EHNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D
Sbjct: 123 TLDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++
Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAK
Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 299 LRIAEKV 305


>gi|283783869|ref|YP_003363734.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
 gi|282947323|emb|CBG86868.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
          Length = 313

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALAEYVAERNLTGRIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  +    +     +      ++P +++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGRELRALGKLMPGEKEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|228474969|ref|ZP_04059697.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119]
 gi|314936659|ref|ZP_07844006.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270954|gb|EEK12342.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119]
 gi|313655278|gb|EFS19023.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp.
           hominis C80]
          Length = 311

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L++ I  L+     + +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +RD+  + +     F +L D + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A DVVN    + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|323340611|ref|ZP_08080863.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus ruminis ATCC 25644]
 gi|323091734|gb|EFZ34354.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus ruminis ATCC 25644]
          Length = 316

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +HV VLL + +  LN  P  V +D T G GG+++           + + D+D  A+ 
Sbjct: 2   TEFEHVTVLLNEAVEGLNIKPDGVYVDCTLGGGGHTKKILSELSEKGRLYSFDQDQTAID 61

Query: 73  CGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             +E +++   K + +L ++ F  +   +  +    VDG+V+DLGVSS Q D G+RGFS+
Sbjct: 62  YNEEQLKNEIEKGRLTLIKSNFRNIASELEKRDVLSVDGIVYDLGVSSPQFDVGERGFSY 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q    LDMRM  +   +A  +VN+ +  DL RI    GEEK A  IA  I K RQ+   +
Sbjct: 122 QHDAVLDMRMDQTNDLTAETIVNEWSYNDLVRIFVRYGEEKFAKSIARRIEKDRQNERIK 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  LI++ +   ++    HPA + FQA+RI VN+E+  L + L  A   L   G +
Sbjct: 182 TTGQLVELIKEGIPAKARRKGGHPAKKVFQAIRIAVNDELGVLEESLEEAFGLLSLHGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F SLEDRLVK  F  + S   +     +        F+ I KK ++PT+E++  N 
Sbjct: 242 SVITFQSLEDRLVKSMFREKTSLPELPPGLPVIPREMQPEFKLINKKPILPTEEELENNH 301

Query: 305 RSRSAKLRAGMR 316
           R+ SAKLR   +
Sbjct: 302 RAHSAKLRIIEK 313


>gi|307126547|ref|YP_003878578.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B]
 gi|306483609|gb|ADM90478.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B]
          Length = 316

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|300715300|ref|YP_003740103.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661]
 gi|299061136|emb|CAX58243.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661]
          Length = 313

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 170/315 (53%), Gaps = 15/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN     + LD TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDNFKHTTVLLDEAVNGLNIKSDGIYLDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F +    FS L DY  +      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFQIIHGPFSALADYADELGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SAS  + QA   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTKGQSASQWLLQAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL   G L 
Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALTALAPEGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFN 303
           V+SFHSLEDR+VK+F   +S        +  + A  A       K    ++P  E+V  N
Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLAKLGGRHLKAFGKMMPGDEEVKEN 297

Query: 304 RRSRSAKLRAGMRTV 318
            R+RS+ LR   RT 
Sbjct: 298 PRARSSVLRVAERTA 312


>gi|260767165|ref|ZP_05876108.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972]
 gi|260617839|gb|EEX43015.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972]
          Length = 316

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 168/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ESFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + G+  SD + QA++ D+T ++   GE+K A RIA AIV  R++     
Sbjct: 120 KDGPLDMRMDPTSGMPVSDWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++ +V
Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTQEQIRALGSADLKTVGKAIKPSEHEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
           A N RSRS+ LR   +
Sbjct: 300 AMNPRSRSSVLRIAEK 315


>gi|332305217|ref|YP_004433068.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172546|gb|AEE21800.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 311

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T   H+ VLL++ +  L+  P  V LDATFG GG+S+           +IALDRDP A+ 
Sbjct: 3   TQTSHLSVLLQESLDGLSIKPDGVYLDATFGRGGHSKQILTQLSDKGRLIALDRDPSAIK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS+++D +    +     G++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  SAKAL--ANDPRFSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM+   G SA+  +  A  +D+ +++   GEEK   RIAH IV  RQ AP  T
Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQQAPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I   V   K+   HPATRSFQ +RI++N+E++E+  GL+SA  +L +GG L V
Sbjct: 181 TAQLAEIIDIAV-PVKDKFKHPATRSFQGIRIYINSELDEIRTGLKSALNSLNSGGRLSV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRR 305
           +SFHSLEDRLVK+F   +S  +     +    +     +++    K + P+ E+++ N R
Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQSEIDSHKALKAIGKAIKPSSEELSRNVR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   +
Sbjct: 300 ARSSVLRVAEK 310


>gi|257451725|ref|ZP_05617024.1| methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 313

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  +
Sbjct: 8   YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y +Q+S+FQ  F  +           VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 68  KRLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 127

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +        +        A  + +TKK ++P+++++  N R+ S+K
Sbjct: 246 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 305

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 306 LRVVERLA 313


>gi|315918163|ref|ZP_07914403.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692038|gb|EFS28873.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 318

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  +
Sbjct: 13  YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + +Q+S+FQ  F  +           VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 73  KRLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 132

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +        +        A  + +TKK ++P+++++  N R+ S+K
Sbjct: 251 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 310

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 311 LRVVERLA 318


>gi|301155878|emb|CBW15347.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus parainfluenzae T3T1]
          Length = 320

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 170/320 (53%), Gaps = 18/320 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
             +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+DRDP A
Sbjct: 4   SFSAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAIDRDPRA 63

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFS 126
           ++  ++       +F +   +FS + D          +DG++ DLGVSS Q+D  DRGFS
Sbjct: 64  IAEAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFS 120

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F K GPLDMRM    G+SA++ + Q +V DLT +L   GEE+ A RIA AIV+  +SA  
Sbjct: 121 FMKDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKSAVK 180

Query: 186 QTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             T+ LS   Q           K+   HPATRSFQA+RI++N E++EL   L SA   L 
Sbjct: 181 NGTECLSRTSQLAELIAQAVPFKDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLA 240

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQE 298
             G L ++SFHSLEDR+VK F   +S      R +          Q   I  K + P++ 
Sbjct: 241 PEGRLSIISFHSLEDRMVKHFMRKQSKGEDIPRGLPLREDQIQRNQKLKIIGKAIQPSEA 300

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           +++ N RSRSA LR   R  
Sbjct: 301 EISANPRSRSAVLRIAERVK 320


>gi|255015714|ref|ZP_05287840.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 2_1_7]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 17/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPV+L + +  L+  P  + +D TFG GG+SR   K   +   +   D+D  A     
Sbjct: 8   YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA----- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F+  ++ F  L +++        VDG++ DLGVSS   D  DRGFSF+  G
Sbjct: 63  EHNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D
Sbjct: 123 ALDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++
Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAK
Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 299 LRIAEKV 305


>gi|218768820|ref|YP_002343332.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis Z2491]
 gi|20139195|sp|Q9JSY9|RSMH_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121052828|emb|CAM09176.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|308388613|gb|ADO30933.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis alpha710]
 gi|325130837|gb|EGC53570.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           OX99.30304]
 gi|325136978|gb|EGC59575.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M0579]
 gi|325208773|gb|ADZ04225.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis NZ-05/33]
          Length = 328

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 171/323 (52%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|125718671|ref|YP_001035804.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis SK36]
 gi|262827313|sp|A3CPZ9|RSMH_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125498588|gb|ABN45254.1| S-adenosyl-methyltransferase mraW, putative [Streptococcus
           sanguinis SK36]
 gi|324994098|gb|EGC26012.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK678]
          Length = 316

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|148988090|ref|ZP_01819553.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP6-BS73]
 gi|168494684|ref|ZP_02718827.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC3059-06]
 gi|147926554|gb|EDK77627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP6-BS73]
 gi|183575411|gb|EDT95939.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC3059-06]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLRPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|117924071|ref|YP_864688.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1]
 gi|263456390|sp|A0L5N9|RSMH_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117607827|gb|ABK43282.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1]
          Length = 313

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 122/315 (38%), Positives = 169/315 (53%), Gaps = 14/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLL++ +A L P  G   LD TFG GG+SR   +       VI LDRD  A++
Sbjct: 1   MSFQHTTVLLQETVAALAPQRGGCYLDGTFGGGGHSRLLLEQCAPTGRVIGLDRDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            GQ  +     + +L +A F+Q+ + +    +   DG + DLGVSS Q+D  +RGFSF +
Sbjct: 61  NGQALVAQMAGRLTLVKAPFAQVAEVLQQLEIAALDGAMLDLGVSSHQLDTAERGFSFIR 120

Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           SGPLDMRM       +A+ ++N  +   L  I    GEE+ A RIA  +VK RQ  PF T
Sbjct: 121 SGPLDMRMDGDSTTPTAAALLNTLDADALADIFFHYGEERHARRIARMVVKVRQQHPFTT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL+  I         +RIHPATR FQ LRI VN E+++L Q L      LK GG L V
Sbjct: 181 TTDLAERI--AHMTPGYSRIHPATRVFQGLRIAVNEELQQLEQALSVLIGLLKPGGHLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAV--FQSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+ F   +        R +  + A       + +  K + P++ ++  N
Sbjct: 239 ISFHSLEDRIVKRLFRDAAKPPEDPVLRGLPIAQAQRPKATLKLVHNKPLTPSEAEIEQN 298

Query: 304 RRSRSAKLRAGMRTV 318
            R+RSAKLR   +  
Sbjct: 299 PRARSAKLRVAQKLA 313


>gi|325686943|gb|EGD28967.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK72]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A DVVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|332358033|gb|EGJ35866.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1056]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A DVVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGATDESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|261391925|emb|CAX49387.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 8013]
          Length = 328

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|332364602|gb|EGJ42371.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1059]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|291615182|ref|YP_003525339.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus
           ES-1]
 gi|291585294|gb|ADE12952.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus
           ES-1]
          Length = 308

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L      + +D TFG GG+SR   +       ++ALD+DP AV+  +E
Sbjct: 7   HATVLLNEAVEALRVKADGIYVDCTFGRGGHSRLILEKLGERGRLVALDKDPMAVAAARE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L  + F  L + +     + VDGV+ DLGVSS Q+D   RGFSF+   PL
Sbjct: 67  I---GDARFQLQHSGFEHLGEVLRGLGIEKVDGVLLDLGVSSPQLDDESRGFSFRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G +A++ +  A+  +L  ++   GEE+ A +IA AIV  RQ     TT+ LS
Sbjct: 124 DMRMDTSRGQTAAEWLATADEGELAEVIRDYGEERFARQIARAIVAARQERAILTTKQLS 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  + +PATR+FQA+RI++N E+EEL   L      LKAGG + V+SFHS
Sbjct: 184 DIVAQCVRTREPGK-NPATRTFQAVRIYINRELEELESVLPQCVDHLKAGGRMAVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +      +++          +  +  K +  + E+VA N R+RSA L
Sbjct: 243 LEDRMVKHFMRDMAQGDKLPKNVPIRAVDVPQGKMRLAGKPIYASAEEVAANPRARSAVL 302

Query: 312 RAGMR 316
           R   R
Sbjct: 303 RVAER 307


>gi|225574511|ref|ZP_03783121.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038298|gb|EEG48544.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM
           10507]
          Length = 336

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 9/313 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           ++    H  VLLE+ I  L   P  + +D T G  G++   CK        I +D+D  A
Sbjct: 21  NNMEFKHKSVLLEETIDGLRVKPDGIYVDGTLGGAGHAVEVCKKLSAKGRFIGIDQDQDA 80

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +RD+ ++ ++ ++ +      + +   + VDG++ DLGVSS Q+D  +RGF++
Sbjct: 81  IIAANERLRDFGDRITIIRSNYCYAVKELRERGIQQVDGILLDLGVSSYQLDNPERGFTY 140

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM      +A D+VN    ++L RI+   GE+K A  IA  IV  R   P +
Sbjct: 141 RVDAPLDMRMDQRASQTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVMERARKPIE 200

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +I++ +    +    HPA R+FQA+RI +N+E++ L   L      L   G +
Sbjct: 201 TTGELTEVIRRAIPMKMQAAGGHPAKRTFQAIRIELNHELDVLRDSLDEMVDILSDRGRI 260

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F           +         +  + IT+K ++P+++++  N 
Sbjct: 261 CIITFHSLEDRIVKTIFRKNENPCTCPSNFPVCVCGKKSKGKVITRKPILPSEDEMEENP 320

Query: 305 RSRSAKLRAGMRT 317
           R++SAKLR   RT
Sbjct: 321 RAKSAKLRIFERT 333


>gi|90407776|ref|ZP_01215954.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3]
 gi|90311136|gb|EAS39243.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3]
          Length = 313

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 185/315 (58%), Gaps = 12/315 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H+ VLL++ +  L      + +DATFG GG+SR   K       +IA+DRDP A+  
Sbjct: 1   MVEHITVLLDEAVNGLAIKEEGIYIDATFGRGGHSRHILKQLGPKGRLIAIDRDPRAIVT 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             E +     +FS+    FS L +YV +      +DGV+ DLGVSS Q+D  +RGFSF +
Sbjct: 61  A-ELLMQEDARFSIIHGPFSDLANYVKELGLAGQIDGVLLDLGVSSPQLDEAERGFSFMR 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   +GISA+  + +A+V+D++ +L   GEEK A RIA AIV  R+  PF  T
Sbjct: 120 DGPLDMRMDPTTGISAAQWLAKADVEDISWVLKTFGEEKFAYRIARAIVADREETPFLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL++LI + +   +  + HPATRSFQA+RI+VN+E+EE+ + L  A   L   GLL V+
Sbjct: 180 LDLANLISR-LCPKREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALDILAIDGLLSVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F   +         +  ++A     +      K + P+  ++  N+RS
Sbjct: 239 SFHSLEDRIVKRFIRKQEKGREYPPGLPLTDAQMQSGKTMKAQGKALKPSAGEIEQNKRS 298

Query: 307 RSAKLRAGMRTVERS 321
           RS+ LR   +T +  
Sbjct: 299 RSSVLRVAKKTAQPE 313


>gi|326803777|ref|YP_004321595.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650961|gb|AEA01144.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 318

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 17/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     H+ VLL++ +  LN       +D T G GG++            + A D
Sbjct: 1   MTETFH-----HITVLLKETVDDLNVKEDGSYVDCTLGGGGHTSYLLSKLSAKGRLYAFD 55

Query: 66  RDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120
           +D  A++  +E   D     Q +L  A F+QL++ +  +    VDG+++DLGVSS Q+D 
Sbjct: 56  QDIQAINHAKERFADAIAAGQLTLIHANFAQLEEQLAQRGVKQVDGILYDLGVSSPQLDD 115

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM  S   +A ++VN  +  DL RIL   GEEK A  IA  I  R
Sbjct: 116 RERGFSYKQDAPLDMRMDQSQTLTAKEIVNDWSYVDLVRILKRYGEEKFAKAIARNIENR 175

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ A    T +L  +I++ +   ++    HPA RSFQA+RI VN+E+  +   L  A + 
Sbjct: 176 RQKAAITRTSELVEIIKEAIPAPARRKGGHPAKRSFQAIRIAVNDELGAIESSLSQALQL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPT 296
           +K  G +  +SF SLEDR+VK  F   S        +    S    A F+ + KK + P+
Sbjct: 236 IKVEGRIAAISFQSLEDRIVKVMFKEASTVDNLPSQLPLLESQLPQAKFRLVNKKPIYPS 295

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
           QE++  N R++SAKLR   R  E
Sbjct: 296 QEELDKNSRAQSAKLRVIERVSE 318


>gi|309799924|ref|ZP_07694128.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302]
 gi|308116451|gb|EFO53923.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV V+L + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ        + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQLRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSKEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|260584184|ref|ZP_05851932.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC
           700633]
 gi|260158810|gb|EEW93878.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC
           700633]
          Length = 313

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 174/313 (55%), Gaps = 11/313 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  HV VLL + +  L   P  + +D T G  G+S          ++   D+D  A+   
Sbjct: 1   MFKHVTVLLHETVDNLEVKPDGIYVDCTLGGAGHSEYLLGQLTTGHLYCFDQDMNAIDNA 60

Query: 75  QETMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  ++++ +  + +   A F  +Q  + +   K VDG+++DLGVSS Q+D  +RGFS+ +
Sbjct: 61  KIRLKNFIDEGKVTFIHANFRMIQKKLNELGIKKVDGILYDLGVSSPQLDQIERGFSYHQ 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  +  ++A +++N+ +  +L RI    GEEK + +IA  I + RQ    +TT
Sbjct: 121 NAILDMRMDQTAPLTAKEIINEWSYDELVRIFYRYGEEKFSKQIARNIERIRQDHGIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+ ++   ++    HPA R FQA+RI VN+E+  +   L  A   L+ GG + V
Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAVRIAVNDELAAVEDSLEQAFDLLEVGGRISV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK  F  +S      +++   P     A F+ IT+K ++PT+E++  N R
Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEQGPKNLPILPGQLESANFKLITRKPILPTEEEMQENSR 300

Query: 306 SRSAKLRAGMRTV 318
           S+SAKLR   R  
Sbjct: 301 SQSAKLRVIERVK 313


>gi|325697683|gb|EGD39568.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK160]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
 gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
          Length = 346

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 156/329 (47%), Positives = 211/329 (64%), Gaps = 7/329 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL++V   + PAPG VI+D TFGAGGYS +F + G++VI +DRDP A+  G+  
Sbjct: 17  ARHIPVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGASVIGIDRDPDAIRDGRAL 76

Query: 78  MRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +    +  L    F  L+++        VDGVV DLGVSSMQ+D   RGFSF+  GPLD
Sbjct: 77  EQASDGRLKLVHGQFVDLEEHARALGHDAVDGVVMDLGVSSMQLDQAARGFSFRFDGPLD 136

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G SA+DVVN    KDLTRI+G+LGEEK+AS ++HAI + R+  PF+TT +L+ +
Sbjct: 137 MRMEQDGPSAADVVNTMERKDLTRIIGLLGEEKRASSVSHAICQAREEKPFETTLELARV 196

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+K V    K   IHPATR+FQALRI+VN E+ + A  L +AE+ L+ GG L+VV+FHSL
Sbjct: 197 IEKVVKRNPKKASIHPATRTFQALRIYVNGELHQAAGALAAAERILRPGGRLVVVTFHSL 256

Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+F A R   +    RHM   +  P  F+ I K     + E+V+ N R+RSA+LR
Sbjct: 257 EDRIVKRFLADRCKTRGGGSRHMPEVDIPPPTFEFIVKGNQDASVEEVSENPRARSARLR 316

Query: 313 AGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           AG R    +   D  +H   +P L+ F G
Sbjct: 317 AGRRLDSPARPLD--IHEAGVPRLASFHG 343


>gi|254673389|emb|CBA08689.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha275]
 gi|319411060|emb|CBY91460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis WUE 2594]
          Length = 328

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/319 (35%), Positives = 173/319 (54%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL++ +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLDEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R   +  ++      + + +  + P + +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAE 294

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           +A N R+RSA LR   RT 
Sbjct: 295 IAANPRARSAVLRVAERTA 313


>gi|317058284|ref|ZP_07922769.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R]
 gi|313683960|gb|EFS20795.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R]
          Length = 318

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  +
Sbjct: 13  YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y +Q+S+FQ  F  +           VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 73  KRLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 132

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +        +        A  + +TKK ++P+++++  N R+ S+K
Sbjct: 251 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 310

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 311 LRVVERLA 318


>gi|227529006|ref|ZP_03959055.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227351018|gb|EEJ41309.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 11/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   HV VLL + +A LN  P    +DAT G GG+S +         + + D+D  A+  
Sbjct: 2   TEFKHVTVLLNEAVAGLNIRPDGTYVDATLGGGGHSSAILNQLTTGRLYSFDQDQTAIRY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            Q+ ++ +    +  L +  F  L   +       VDG+V+DLGVSS Q D   RGFS++
Sbjct: 62  NQQHLKKFIDDGRSILIEDNFRNLGTALAKNGVKSVDGIVYDLGVSSPQFDDAQRGFSYK 121

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+     SA +VVN+   + L +IL   GEE+ A +IA  I +RR+S P +T
Sbjct: 122 LDAPLDMRMNQQQALSAMNVVNEWPYEKLVKILYRYGEERFAKQIARKIERRRESKPIKT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++ +  HPA ++FQA+RI VN+E+  L   L  A + L  GG + 
Sbjct: 182 TFELVDVIKEAIPAAARRHGGHPAKKTFQAIRIAVNDELGALEDSLEQALELLNVGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLEDRLVK  F  +      +     +        F+ I KK ++P+QE++A N 
Sbjct: 242 VITFQSLEDRLVKTMFHEKVSLADELPPGLPVIPPEMQPKFKLINKKPILPSQEELANNH 301

Query: 305 RSRSAKLRAGMRTV 318
           R+ SAKLR   R  
Sbjct: 302 RAHSAKLRIIERIK 315


>gi|325695197|gb|EGD37098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK150]
          Length = 316

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A DVVN  + +DL RI    GE+K + +IA  I + R     +TT +
Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKLIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VNNE+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNNELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+QE++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSQEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|167622387|ref|YP_001672681.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4]
 gi|262826525|sp|B0TQM9|RSMH_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167352409|gb|ABZ75022.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4]
          Length = 315

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 173/308 (56%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  + +D TFG GG+SR   +       +IA+DRDP A++  +
Sbjct: 6   EHLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F +    F QL DYV D      +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 66  QFKDDSR--FQIVHGGFGQLADYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+  + +A ++D+  +    GEEK +  IA  I   R+ APF  T++
Sbjct: 124 PLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F    S        +  +       + +    K + P+ E++  N R+RS
Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEEEINKSRKLKGVGKAIKPSAEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAQR 310


>gi|304386665|ref|ZP_07368947.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC
           13091]
 gi|304339250|gb|EFM05328.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC
           13091]
          Length = 328

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/319 (35%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++      ATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDSATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R   +  ++      + + +  + P + +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAE 294

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           +A N R+RSA LR   RT 
Sbjct: 295 IAANPRARSAVLRVAERTA 313


>gi|218281029|ref|ZP_03487608.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989]
 gi|218217710|gb|EEC91248.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989]
          Length = 308

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 7/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +H+ VLL + I +L      + +D T G GG+S    K     ++ A D D  A+     
Sbjct: 2   EHISVLLNESIDMLQIKEDGIYVDCTLGRGGHSSEILKRLTSGHLYAFDCDQNAIDESMP 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++   +QF+L  + F  L+  +  +GV+    +  DLGVSS Q D   RGFS++    L
Sbjct: 62  RLKAIGDQFTLIHSPFENLKSELAKRGVNFVDGIFMDLGVSSPQFDDAQRGFSYRWDARL 121

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S    A  VVN  + +DL RIL   GEE  A +IA  I K R+ AP +TT +L 
Sbjct: 122 DMRMDQSQELDAYVVVNTYDKEDLIRILKRYGEEPFAQKIADKICKAREIAPIETTFELV 181

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +       + HPA ++FQA+RI VN+E+E+L   L      L   G + V++FH
Sbjct: 182 DVIKSALPAAVLRKKGHPAKQTFQAIRIEVNHELEQLETVLHDGLTMLNPHGRMAVITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+ F   +      + +         +Q + +K V+ + E++  N R+ SAKL
Sbjct: 242 SLEDRIVKEIFKEVAVAKKVNKRLPQVGTENLEYQLVNRKPVLASSEELEMNNRAHSAKL 301

Query: 312 RAGMR 316
           R   +
Sbjct: 302 RGIEK 306


>gi|325142966|gb|EGC65323.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 961-5945]
          Length = 328

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
 gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
          Length = 331

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 149/329 (45%), Positives = 204/329 (62%), Gaps = 5/329 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68
            +A       H+PVLL  ++A + P    V LD TFGAGGY+R   + G+  VI +DRDP
Sbjct: 1   MAAAETGRRPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+   Q+    Y ++  L   TFSQL D    + +DGVV DLGVSSMQ+D  DRGFSFQ
Sbjct: 60  LALEMAQDWAGAYGDRLRLVAGTFSQL-DVHAGEPLDGVVLDLGVSSMQLDQADRGFSFQ 118

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           K GPLDMRMS  G SA+D+VN+A+ + L  IL   GEE+ + RIA AIV+ R + P   T
Sbjct: 119 KDGPLDMRMSQQGESAADLVNEASEETLADILYHYGEERASRRIARAIVEARAAGPITRT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+ALK GG L VV
Sbjct: 179 LHLAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALKPGGRLAVV 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+F   RS G+    R+   + A  A F    ++ + P + ++A N R+R
Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAEAARFTLPLRRAISPDEAELADNPRAR 298

Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           SA+LR G+RT   +   D   + +P +P 
Sbjct: 299 SARLRVGVRTDAPAGPVDPQVLGMPLIPK 327


>gi|225858187|ref|YP_002739697.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585]
 gi|298254744|ref|ZP_06978330.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502138|ref|YP_003724078.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|262826820|sp|C1CBB2|RSMH_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225720978|gb|ACO16832.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585]
 gi|298237733|gb|ADI68864.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|255068190|ref|ZP_05320045.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256]
 gi|255047532|gb|EET42996.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256]
          Length = 317

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 169/313 (53%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + +    H+ VLL + +  L      + +D TFG GG+SR           +I  D+DP 
Sbjct: 1   MSNAEYQHITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   Q+ + +   + ++    FS  Q   D +  + +DG +FDLG+SS QID G RGFS
Sbjct: 61  AIEAAQK-LAEQDGRVTVVHDRFSSFQTTLDKLDIEEIDGALFDLGISSPQIDDGARGFS 119

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P 
Sbjct: 120 FRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRTESPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+ L+ L+ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L
Sbjct: 180 DTTRKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMGRLKQGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK+F    S      R   +     P        K + P  E+ A N 
Sbjct: 239 AVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 299 RARSAVLRVAERT 311


>gi|148983740|ref|ZP_01817059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP3-BS71]
 gi|149013058|ref|ZP_01833924.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP19-BS75]
 gi|168484209|ref|ZP_02709161.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1873-00]
 gi|194398555|ref|YP_002037018.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54]
 gi|225856075|ref|YP_002737586.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031]
 gi|262825679|sp|C1CIJ8|RSMH_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826787|sp|B5E6Z2|RSMH_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4009486|gb|AAC95454.1| YllC [Streptococcus pneumoniae G54]
 gi|147763093|gb|EDK70035.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923887|gb|EDK74999.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP3-BS71]
 gi|172042545|gb|EDT50591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1873-00]
 gi|194358222|gb|ACF56670.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54]
 gi|225724871|gb|ACO20723.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031]
 gi|301799463|emb|CBW32003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae OXC141]
 gi|332077620|gb|EGI88081.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA41301]
 gi|332202242|gb|EGJ16311.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA41317]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|327467238|gb|EGF12742.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK330]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQRAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|257463543|ref|ZP_05627936.1| methyltransferase [Fusobacterium sp. D12]
 gi|317061098|ref|ZP_07925583.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12]
 gi|313686774|gb|EFS23609.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12]
          Length = 313

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  +
Sbjct: 8   YHIPVLYEETLENLLWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDASAIAFCK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y +Q+S+FQ  F  +           VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 68  KRLEKYGKQWSVFQNNFENIDIVSYLAGLDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 127

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVNQ   +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 128 LDMRMNAEQELSAYEVVNQYAEQDLVRILFEYGEERYAKKIAAFICENRKEKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   + +    HPA ++FQA+R+ VN E+E L   ++ + + LK  G L +++FH
Sbjct: 188 VAIIKRA--YPERAAKHPAKKTFQAIRMEVNRELEVLETAIQKSVELLKPKGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +        +        A  + ITKK ++P++E+V  N R+ S+K
Sbjct: 246 SLEDRLVKTVFKDLARACKCPPELPVCVCGGKAKVKIITKKPILPSEEEVGKNNRAHSSK 305

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 306 LRIVERLA 313


>gi|149018026|ref|ZP_01834485.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931590|gb|EDK82568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP23-BS72]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|254805557|ref|YP_003083778.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14]
 gi|254669099|emb|CBA07673.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14]
          Length = 328

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A        I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|331090606|ref|ZP_08339457.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401046|gb|EGG80641.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 311

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLLE+ +  LN  P  + +D T G GG++   CK      + I +D+D  A+ 
Sbjct: 1   MTFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAFEVCKQLSDKGSFIGIDQDEAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                +RD+ E+ ++ ++ +  ++     +    VDG+V DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AAGIRLRDFGERVTIVRSNYCDMKLQLQKLGIDKVDGIVLDLGVSSYQLDTAERGFSYRV 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN  +  +L RI+   GE+K A  IA  IV  R+    +TT
Sbjct: 121 DVPLDMRMDRRQEMTAKDIVNTYSEMELYRIIRDYGEDKFAKNIAKHIVLEREKGSIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I++ +    + N  HPA R+FQA+RI +N E++ L   L      L   G + +
Sbjct: 181 GQLIEIIKRAIPMKFQKNGGHPAKRTFQAIRIELNRELDVLRDSLDEMIDMLNENGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           H       + +  + IT+K ++P+ E++ +N RS
Sbjct: 241 ITFHSLEDRIVKSIFRRNENPCTCPSHFPVCVCGNESKGKVITRKPILPSAEELEYNSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|324992001|gb|EGC23923.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK405]
 gi|325688754|gb|EGD30763.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK115]
 gi|327490522|gb|EGF22303.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1058]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|227874385|ref|ZP_03992569.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Oribacterium sinus F0268]
 gi|227839793|gb|EEJ50239.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Oribacterium sinus F0268]
          Length = 311

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  +++E+ +  LN     + +D T G GG+S    +       +I +D+D  A+    E
Sbjct: 5   HKSIMVEECMEGLNIKKDGIYVDGTLGGGGHSFHILERLGEKGQLIGIDQDEDAILAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ + +Q  + +  +    + +     + VDG++ DLGVSS Q D  +RGFS++   PL
Sbjct: 65  RLKPFAKQLHIIRDNYEHFPEILSSLSIEKVDGILLDLGVSSHQFDEEERGFSYRFDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA D+VN  +   L  I+   GE+K A  IA  IV  RQ  P +TT++L+
Sbjct: 125 DMRMDQRQDFSAKDLVNSYSESSLFHIIRDYGEDKFAKNIAKHIVLARQEKPIETTKELA 184

Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I   +         HPA R+FQA+RI +N E+E L   L+S  +AL  GG + ++SFH
Sbjct: 185 EIISHAIPMKFRLQGGHPAKRTFQAIRIALNRELEVLENSLKSMIEALNPGGRICIISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F       +        +    ++ + I++K + P++E++  N R++SAK
Sbjct: 245 SLEDRIVKRSFKEAENPCICPPDFPVCTCGRKSLGKVISRKAICPSEEEMEENPRAKSAK 304

Query: 311 LRAGMRT 317
           LR   RT
Sbjct: 305 LRIFERT 311


>gi|261345652|ref|ZP_05973296.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM
           4541]
 gi|282566134|gb|EFB71669.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM
           4541]
          Length = 317

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/320 (36%), Positives = 166/320 (51%), Gaps = 16/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNLKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A+   QE       +F +    FS + DY  ++     +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQEI---DDPRFMIKHGPFSAIADYAEEEGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA+  +  A   D+  +L   GEE+ A RIA AIV+R  +  
Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAQWLMTAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177

Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +  T     + +   V   K+   HPATRSFQA+RI++N+E+EE+ + L  A   L   
Sbjct: 178 EEPLTRTRHLAELIAKVSPMKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPE 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQED 299
           G L V+SFHSLEDRLVK+F    S        +  + A        +      + P+  +
Sbjct: 238 GRLSVISFHSLEDRLVKRFIRQHSSGPSVPPGIPLTEAQIKELGAAKLRGLGKMKPSDSE 297

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           +  N R+RS+ LR   R  E
Sbjct: 298 IDENPRARSSVLRFAERAPE 317


>gi|116334056|ref|YP_795583.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus brevis ATCC 367]
 gi|122269260|sp|Q03QH0|RSMH_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116099403|gb|ABJ64552.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus brevis ATCC 367]
          Length = 314

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           HV VLL++ +A L   P  V +D T G GG+S+   +     ++ A D+D  A++  +E 
Sbjct: 6   HVTVLLKEAVAGLAIKPTGVYVDCTLGGGGHSQRILEQLTTGHLYAFDQDQTAITYNEEH 65

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ Y +  + +  ++ F Q+Q  + ++    VDG+++DLGVSS Q D  DRGFS+Q   P
Sbjct: 66  LKTYLDAGKLTFIKSNFRQIQTELTERGITQVDGILYDLGVSSPQFDEADRGFSYQHDAP 125

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S   SA  VVN+ +  DL RI    GEEK A  IA AI + R+ AP  TT  L
Sbjct: 126 LDMRMDQSQKLSAWIVVNEWSFNDLLRIFHRYGEEKFAKPIARAIERHREQAPIDTTGQL 185

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA + FQA+RI VN+E+  L   L  A   L   G + V++F
Sbjct: 186 VEIIKEGIPAAARRHGGHPAKKVFQAIRIAVNDELGALEDSLEQAVSLLDVNGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDRLVK  F  +S        +    +     F+ +  K ++P++E++A N R+ SA
Sbjct: 246 QSLEDRLVKTMFREQSSLPELPHGIPVIPDNLQPDFKLVNHKPILPSEEELAVNHRAHSA 305

Query: 310 KLRAGMRTV 318
           KLR   +  
Sbjct: 306 KLRILEKIK 314


>gi|261823024|ref|YP_003261130.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163]
 gi|261607037|gb|ACX89523.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163]
          Length = 314

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 177/314 (56%), Gaps = 18/314 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN   G   +D TFG GG+SR           ++A+DRDP A+ 
Sbjct: 3   ENYKHTSVLLDEAVNGLNIRSGGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS + DYV ++     +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKAI---DDPRFSIIHGPFSAMADYVAERGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   
Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V
Sbjct: 180 TKELAELI-AAASPVREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F   +S        +  + A          + + KK ++P++E+VA 
Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEAQLRSQGGQTLKPVGKK-LMPSEEEVAE 297

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 298 NPRARSSVLRFAER 311


>gi|85712541|ref|ZP_01043589.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145]
 gi|85693675|gb|EAQ31625.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145]
          Length = 315

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 13/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H+ VLLE+ I  L   P  + +DATFG GG++R+          VIALD+DP 
Sbjct: 1   MTEQNAPHISVLLEESIRALVTDPDGIYIDATFGRGGHTRALLSKLSPKGRVIALDQDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++  Q       E+FS+    FS L   +        V G++FDLGVSS Q+D  +RGF
Sbjct: 61  AIASAQAL--ADDERFSIIHTPFSDLAHIIEQQQLAHQVTGILFDLGVSSPQLDDAERGF 118

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+D ++ A   D+T +L   GEE+ A +IA AIV  R+  P
Sbjct: 119 SFMRDGPLDMRMDSSRGETAADWLSYAEEDDITYVLKTYGEERFARKIARAIVHDREQKP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+ L+ LI + V   + ++ HPATRSFQA+RI VN E+E++   L ++  ALK  G 
Sbjct: 179 FTRTRQLAELIGRLVPSKEKHK-HPATRSFQAIRIHVNRELEQIEDALEASLTALKEDGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L+V+SFHSLEDR+VK+F  + S        +  + A     + +    K + P+  ++  
Sbjct: 238 LVVISFHSLEDRIVKRFMRTHSQPKQVPPGLPITEAELNKDRRLALESKAIKPSAAELEL 297

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   R   
Sbjct: 298 NPRARSSVLRIARRLAH 314


>gi|324991745|gb|EGC23677.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK353]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLRDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|327472730|gb|EGF18157.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK408]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|114564962|ref|YP_752476.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB
           400]
 gi|122298407|sp|Q07WH7|RSMH_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114336255|gb|ABI73637.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB
           400]
          Length = 313

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 167/314 (53%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLNETVDGLNIQSDGIYIDGTFGRGGHSRHVLSHLGENGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL +YV +      ++GV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLAEYVEELGLTGKINGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK +  IA  I   R+  P
Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALAVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L V+SFHSLEDR+VK+F    S        +    A     + +    K + P+  ++  
Sbjct: 237 LSVISFHSLEDRMVKRFIRRHSQGESVPHGLPIMEAELNKSRKLKAVSKALKPSDAELEL 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRVAER 310


>gi|127514389|ref|YP_001095586.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4]
 gi|262826527|sp|A3QIM9|RSMH_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126639684|gb|ABO25327.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4]
          Length = 313

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 173/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + +A LN  P  + +D TFG GG+SR   K       +IA+DRDP A++  ++
Sbjct: 7   HLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQAIAAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    F QL  YV D      +DG++FD GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDAR--FSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ + +A ++D+  +    GEEK A  IA  I   R   PF  T++L
Sbjct: 125 LDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARVSKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  + A     + +    K + P+ E++  N R+RS+
Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPLTEAEINKTRLLKAVGKAIKPSAEEIDRNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|301793586|emb|CBW35963.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV104]
 gi|332204336|gb|EGJ18401.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA47901]
          Length = 316

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + +  A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIHQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|253988586|ref|YP_003039942.1| S-adenosyl-methyltransferase MraW [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780036|emb|CAQ83197.1| s-adenosyl-l-methionine-dependent methyltransferase [Photorhabdus
           asymbiotica]
          Length = 314

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MANSHFKHTSVLLDEAVNGLNIRKDGIYIDGTFGRGGHSRLILSQLGMEGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIETAKSI---TDPRFSIIHGPFSELAHYVENAGLTGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA++ + +A   D+  +L   GEE+ A RIA AIV R Q  P
Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIAKAIVTRNQEEP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T+ L+ LI +     K    HPATRSFQA+RI++N+E+EE+ Q L  A + L   G 
Sbjct: 178 ITRTKVLADLIAQA-SPVKEKYKHPATRSFQAIRIYINSELEEIEQALDGALQVLAPRGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  +            +SI K  + P++ +
Sbjct: 237 LSVISFHSLEDRIVKRFIRHNSRGPQVPAGLPLTEEQLKAQGGRSLKSIGK--MKPSENE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   +  E
Sbjct: 295 VADNPRARSSVLRFAEKVSE 314


>gi|268591763|ref|ZP_06125984.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131]
 gi|291312724|gb|EFE53177.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131]
          Length = 317

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 169/322 (52%), Gaps = 20/322 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A+   Q        +F +    FS + +YV ++     +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQTI---DDPRFMIKHGPFSAIAEYVEEEGLVGQIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA   +  A   D+  +L   GEE+ A RIA AIV+R  +  
Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMDAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177

Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +  T     + +   V   K+   HPATRSFQA+RI++N+E+EE+ + L  A   L   
Sbjct: 178 EEPLTRTRHLAELIAKVSPMKDRHKHPATRSFQAIRIYINSELEEIEKALEGAMNVLAPQ 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQ 297
           G L V+SFHSLEDRLVK+F    S        +  + A       A  + + K  + P++
Sbjct: 238 GRLSVISFHSLEDRLVKRFIRKNSKGPSVPAGIPLTEAQIKELGAAQLRDLGK--MKPSE 295

Query: 298 EDVAFNRRSRSAKLRAGMRTVE 319
            ++  N R+RS+ LR   +  E
Sbjct: 296 NEIDENPRARSSVLRFAEKAAE 317


>gi|315181138|gb|ADT88052.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii NCTC 11218]
          Length = 316

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 167/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ESFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + G+  S  + QA++ D+T ++   GE+K A RIA AIV  R++     
Sbjct: 120 KDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++ +V
Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTQEQIRALGSADLRTVGKAIKPSEHEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
           A N RSRS+ LR   +
Sbjct: 300 AMNPRSRSSVLRIAEK 315


>gi|327459305|gb|EGF05651.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1]
          Length = 316

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|319947571|ref|ZP_08021801.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus australis ATCC 700641]
 gi|319746259|gb|EFV98522.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus australis ATCC 700641]
          Length = 316

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSQLSEKGHLYAFDQDQHAIDNAEK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +     +DG+ +DLGVSS Q+D   RGFS++K  
Sbjct: 67  RLAPYVEKGMVTFIKDNFRNLQARLQELGVNEIDGICYDLGVSSPQLDERSRGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNQEASLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L  GG + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVGGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +               + +++K ++P+QE++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLKPKMELVSRKPILPSQEELEKNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|322391390|ref|ZP_08064860.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus peroris ATCC 700780]
 gi|321145816|gb|EFX41207.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus peroris ATCC 700780]
          Length = 316

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV V+L + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  L+D + D     +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +        +++K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMGLVSRKPILPSKEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|261365120|ref|ZP_05978003.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996]
 gi|288566552|gb|EFC88112.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996]
          Length = 317

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + +    H+ VLL + +  L      + +D TFG GG+SR           +I  D+DP 
Sbjct: 1   MSNAEYQHITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   Q+ + +   + ++    FS  Q   D +  + +DG +FDLG+SS QID G RGFS
Sbjct: 61  AIEAAQK-LAEQDGRVTVVHDGFSSFQTTLDKLGIEEIDGALFDLGISSPQIDDGARGFS 119

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G+SA+D +  A+ +DL  ++   GEE+ + +IA AIV +R   P 
Sbjct: 120 FRFDAPLDMRMDPTRGMSAADWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+ L+ L+ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L
Sbjct: 180 DTTRKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMGRLKEGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK+F    S      R   +     P        K + P  E+ A N 
Sbjct: 239 AVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 299 RARSAVLRVAERT 311


>gi|148556856|ref|YP_001264438.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1]
 gi|262826617|sp|A5VDD4|RSMH_SPHWW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148502046|gb|ABQ70300.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1]
          Length = 322

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 193/313 (61%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   HVPVL+++VIA L PA G+  +D TFGAGGY+R+  + G+ V A DRDP A++ G+
Sbjct: 3   TTAPHVPVLIDEVIAGLEPATGETHVDGTFGAGGYTRALLQAGARVYAFDRDPDAIAEGR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +  L    FS++ + + ++    VDGV  D+GVSSMQ+D  DRGFSFQ  GP
Sbjct: 63  ALEDGQDGRLILVPERFSRMAEALNERGIDQVDGVTLDIGVSSMQLDRADRGFSFQADGP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  SG+SA+D VN A+  ++  +L  LGEE +A R+A AIV+ R   P   T +L+
Sbjct: 123 LDMRMEKSGMSAADFVNTADEAEIADVLHDLGEEPRARRVARAIVQAR---PITRTSELA 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +    + +  PATR+FQA+RI +N E++EL QGL +AE+ L+ GG L VVSFHS
Sbjct: 180 EVVRRALGHKPHEKKDPATRTFQAIRIHLNAELDELEQGLAAAERVLRPGGRLAVVSFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +EDR+VK+F   RSG   A    +P          F+++  K V   + ++A N RSRSA
Sbjct: 240 IEDRIVKRFLRDRSGATPAGSRHLPDARAGGPRPSFEAVA-KPVRAGEAELARNPRSRSA 298

Query: 310 KLRAGMRTVERSI 322
            LR   RT     
Sbjct: 299 TLRVARRTAAAPW 311


>gi|309803099|ref|ZP_07697196.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           11V1-d]
 gi|308164607|gb|EFO66857.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           11V1-d]
          Length = 315

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 1   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLRPTLKIISRKPIVATDKELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|148996748|ref|ZP_01824466.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576735|ref|ZP_02722593.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           MLV-016]
 gi|307066994|ref|YP_003875960.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus pneumoniae
           AP200]
 gi|147757323|gb|EDK64362.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577531|gb|EDT98059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           MLV-016]
 gi|306408531|gb|ADM83958.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus pneumoniae
           AP200]
          Length = 316

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLIRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|319404518|emb|CBI78123.1| S-adenosyl-methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 349

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 162/325 (49%), Positives = 212/325 (65%), Gaps = 3/325 (0%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PVLL+ V+A L P  G  ++D TFGAGGYS +    G+ VIALDRDP A+  GQ 
Sbjct: 25  VERHIPVLLQSVLAELAPLAGSKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  +  L QA FSQL D++ ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMR
Sbjct: 85  LVDQFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A+DVVN     DL ++    GEE+ A RIA  I KRR   PF  T DL+  ++
Sbjct: 144 MGQIGFTAADVVNYLKADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAVE 203

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +     + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR
Sbjct: 204 SLIGRKPGDHIHPATRVFQALRIYVNNELAELACGLFAAERVLKAGGRLAVVSFHSLEDR 263

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VKKFF++RSG     R++    + PA F  + K V  PTQE++  N R+RSA+LR G+R
Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQQNPRARSARLRMGVR 323

Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341
           T E +I  D  + L  L  + +F G
Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346


>gi|256390851|ref|YP_003112415.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM
           44928]
 gi|256357077|gb|ACU70574.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM
           44928]
          Length = 316

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 125/314 (39%), Positives = 179/314 (57%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           T   H+PV+LE+ + +L P    PG V+LDAT G GG+S +F +      +I LDRDP A
Sbjct: 2   TSATHIPVMLERCVEILGPALERPGAVVLDATLGLGGHSEAFLRRFPDVRLIGLDRDPQA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  + E+ +L  A + ++ D +       + G +FDLGVSS+Q+D  +RGF++
Sbjct: 62  LEASGRRLAPFGERATLVHAVYDEIPDVLERLGVAELSGTLFDLGVSSLQLDMRERGFAY 121

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM    GI+A+D+VN     D+ RIL   GEE+ A RIA  IV  R+  PF 
Sbjct: 122 SYDAPLDMRMDSSRGITAADIVNTYPAADIARILRDYGEERFARRIADRIVAEREKEPFT 181

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  LS L++ ++   ++    HPA R+FQALRI VN+E+  L + L +A  A   GG +
Sbjct: 182 TTARLSDLVRDSIPAATRRTGGHPAKRAFQALRIAVNDELPVLERALPAAVAATGLGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA  S         +    +   F+ +T+    PT  + A N R
Sbjct: 242 AVLSYHSLEDRLVKRVFAKASESAAPPGLPVVPEQYQPKFRLLTRGAEPPTDAETAENPR 301

Query: 306 SRSAKLRAGMRTVE 319
           + SAKLRA  R  E
Sbjct: 302 AASAKLRAAERVRE 315


>gi|114777870|ref|ZP_01452801.1| methyltransferase [Mariprofundus ferrooxydans PV-1]
 gi|114551861|gb|EAU54401.1| methyltransferase [Mariprofundus ferrooxydans PV-1]
          Length = 331

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 162/310 (52%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H+PVL +  I  +   P    +D TFG GG+SR           ++A DRDP AV+
Sbjct: 6   EYSEHIPVLRDAFIDAIFSDPDGCYVDCTFGRGGHSRQLLARLSEKGRLLAFDRDPDAVA 65

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            G+E +     +F++  A F++L +         V G+ FDLGVSS Q+D   RGFSF++
Sbjct: 66  AGEE-LAQQDARFAIEHADFARLGEVLDARGWCQVTGIGFDLGVSSPQVDQAQRGFSFRQ 124

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G   S  +   + ++L  IL   G+E+ A RIA AI+K        TT
Sbjct: 125 DGPLDMRMDTTQGQPLSRRLEHVSERELIDILRRFGDERYAQRIARAILKAMHDGALTTT 184

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            DL +     V    +    HPATR+FQALRI+VN+E++++  G+ +A   L+ GG L V
Sbjct: 185 SDLENACFHAVPKQARYGSTHPATRTFQALRIWVNDEMQQIDDGISAAVDHLQPGGRLAV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHS EDR ++    +R         M           + + KK V P + +VA N RS
Sbjct: 245 ISFHSGEDRRIRDLIEARVHACTCPPQMPVCVCGKKPTMRWLQKKPVRPDEGEVAANPRS 304

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 305 RSSMLRVAQR 314


>gi|306824545|ref|ZP_07457891.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433332|gb|EFM36302.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 316

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELVANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|170748783|ref|YP_001755043.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans
           JCM 2831]
 gi|263456464|sp|B1LYT9|RSMH_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170655305|gb|ACB24360.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans
           JCM 2831]
          Length = 353

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 134/313 (42%), Positives = 188/313 (60%), Gaps = 8/313 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            HVPVLL +V+  L    G   +D TFGAGGY+R+         V+A+DRDP A++ GQ 
Sbjct: 23  PHVPVLLAEVVEALGT-EGGTAVDGTFGAGGYTRALLAADPALQVVAIDRDPTAIAGGQA 81

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   +  L    F  L   + +     VD VV D+GVSSMQ+D  +RGFSF+  GPL
Sbjct: 82  LVAESGGRLRLLPGRFGDLDGLLAEAGIAQVDRVVLDIGVSSMQLDAPERGFSFRSDGPL 141

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM+C G SA+D+VN+A+   L  I+   GEE+++  +A  I++ R+    +TT  L+ 
Sbjct: 142 DMRMACDGPSAADLVNEADETVLADIIYHFGEERRSRAVARTILEARRRGRIETTAQLAE 201

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           L+   V     + IHPATR+FQ LRI VN+E+ EL + L +AE+ L+ GG L VV+FHSL
Sbjct: 202 LVAGVVRTEPGSHIHPATRTFQGLRIAVNDELGELVRALHAAERVLRPGGRLAVVTFHSL 261

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+FFA+RSG+       +P         F+ +TK  V+P + + A N R+RSAKL
Sbjct: 262 EDRIVKQFFAARSGRSAQGSRHLPGGPVETVRSFRPVTKGPVLPGEAETARNPRARSAKL 321

Query: 312 RAGMRTVERSIED 324
           RA  RT     E 
Sbjct: 322 RAAERTESDVPEP 334


>gi|295398679|ref|ZP_06808703.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563]
 gi|294973114|gb|EFG48917.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563]
          Length = 316

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 163/310 (52%), Gaps = 11/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +D T G  G+S            +IA D+D  A+   ++
Sbjct: 7   HISVLLNESVDGLAIKPNGIYVDCTLGGAGHSSKIAAALSDEGRLIAFDQDLVAIGNAEK 66

Query: 77  TMRDYKE--QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +    E  + +L    F  +Q   + +   GVDG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 67  VLAAEIESGKVTLVHNNFRHIQSELEKMGITGVDGILYDLGVSSPQLDEIERGFSYHQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   +A  ++N     DL RI    GEEK + +IA  I +RR       T++
Sbjct: 127 PLDMRMDQTQALTAETIINDWEYNDLVRIFYRYGEEKFSKQIARKIEQRRADHRITRTEE 186

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  ++++ +   ++    HPA R FQA+RI VN+E+  +   L  A   L  GG +  +S
Sbjct: 187 LVDIVKEAIPAPARRKGGHPAKRIFQAVRIAVNDELGAIEDSLEQALNLLNVGGRVSAIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDR+VK+ F   S       ++   NA   A F+ + +K +  ++E++A+N R++S
Sbjct: 247 FQSLEDRIVKQMFKDASTGEELPANLPVINADIEAPFKLVNRKPIYASEEELAYNSRAQS 306

Query: 309 AKLRAGMRTV 318
           AKLR   R  
Sbjct: 307 AKLRIIERIK 316


>gi|312871660|ref|ZP_07731752.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           3008A-a]
 gi|311092885|gb|EFQ51237.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           3008A-a]
          Length = 315

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 1   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K Q SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKKSFSEVLKANSKPQLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQVPDSLKPTLKIISRKPIVATNKELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|319900359|ref|YP_004160087.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108]
 gi|319415390|gb|ADV42501.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108]
          Length = 306

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 106/315 (33%), Positives = 162/315 (51%), Gaps = 16/315 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR      K G  ++  D+D  
Sbjct: 1   MKEEQTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILTRLKDGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +++       VD ++ DLGVSS   D   RGFS
Sbjct: 61  A-----ERNIVNDPHFTFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSQRGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G +A+DVVN  + + L  I  + GE K + ++A  I K R +   
Sbjct: 116 FRFDGELDMRMNKRAGTTAADVVNNCSEEHLADIFYLYGELKNSRKLASVIAKARAAQKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN+E+E L + L +A +ALK GG L
Sbjct: 176 TTIGEFLDIIKP--LFGREREKKELAKVFQALRIEVNHEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPR 291

Query: 306 SRSAKLRAGMRTVER 320
           SRSAKLR   +   +
Sbjct: 292 SRSAKLRIAEKVERK 306


>gi|303259429|ref|ZP_07345406.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP-BS293]
 gi|303261184|ref|ZP_07347133.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263511|ref|ZP_07349434.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397]
 gi|303265804|ref|ZP_07351702.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457]
 gi|303267765|ref|ZP_07353567.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458]
 gi|302638021|gb|EFL68507.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639363|gb|EFL69821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP-BS293]
 gi|302642461|gb|EFL72806.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458]
 gi|302644712|gb|EFL74961.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457]
 gi|302647284|gb|EFL77508.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397]
          Length = 316

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +   +  + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKSKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|167754606|ref|ZP_02426733.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402]
 gi|237733759|ref|ZP_04564240.1| S-adenosyl-methyltransferase mraW [Mollicutes bacterium D7]
 gi|167705438|gb|EDS20017.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402]
 gi|229383097|gb|EEO33188.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. D7]
          Length = 314

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + DHV VLL++ +  LN     + +D T G  G+S +  K     ++   D+D  A+   
Sbjct: 1   MFDHVTVLLKEAVEGLNIKADGIYVDCTLGGAGHSCAILKQLTTGHLYCFDQDQTAIEAA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +      +++  + F  +++ + +     VDG++FDLGVSS Q D G RGFS+    
Sbjct: 61  RLRLDAVGNNYTIIYSNFVNIKEKLNELGVTRVDGILFDLGVSSPQFDTGSRGFSYNYDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S    A  +VN    + +  IL    +EK A +IA  I ++RQ  P +TT +
Sbjct: 121 RLDMRMDTSNPLDAYAIVNTWPYERIVEILYKYADEKFAKQIARKIEQKRQIRPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +  F++    HPA R+FQALRI VN+E+    + L+ +   L  GG + V++
Sbjct: 181 LVDIIKDAIPAFARRKGGHPAKRTFQALRIAVNDELNVFDRALKDSLDLLNVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLED++ K  F   +  K +     +  +     F+ I KK +V ++E++  N R+ S
Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPDYLQPRFKLINKKAMVASKEELEVNHRAHS 300

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 301 AKLRIIER 308


>gi|327404192|ref|YP_004345030.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola
           taffensis DSM 16823]
 gi|327319700|gb|AEA44192.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola
           taffensis DSM 16823]
          Length = 308

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 153/310 (49%), Gaps = 10/310 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFA 70
           ++    HVPV+L++ +  L   P  + +D TFG GG+SR+          +I  D+DP A
Sbjct: 3   NNDATYHVPVMLQECLDGLVINPDGIYVDVTFGGGGHSRAIFEKLSPKGKLIVFDQDPDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +   E         +   A        +    VDG++ DLGVSS Q D   RGFS + +
Sbjct: 63  RANAWE--APNFHFVAANFAFLRNHLRVMGIPAVDGILADLGVSSHQFDDAKRGFSIRSN 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ +G  +A+ +V   + + L  I    GE     + A  +VK R  +  +TT 
Sbjct: 121 EVLDMRMNQAGDFTAAKIVQTYDEEQLAAIFRKYGELDHPFKTAVELVKARNKSKIKTTG 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L   +       K+++     + FQALRI VN E++ L + L     +LK  G L+V+S
Sbjct: 181 ELMEALMPVAPKFKDHK--FFAQVFQALRIEVNQEMDVLEKFLLQTADSLKPDGRLVVMS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK      S      +        P  F+ I +K ++P++E++  N R+RSA
Sbjct: 239 YHSLEDRLVKNLMKRGSLDGSIEKDFFGKVLKP--FEEINRKPILPSEEEIQRNTRARSA 296

Query: 310 KLRAGMRTVE 319
           KLR   R  +
Sbjct: 297 KLRIAKRVED 306


>gi|328945057|gb|EGG39213.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1087]
          Length = 316

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKDASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|262383993|ref|ZP_06077129.1| methylase MraW [Bacteroides sp. 2_1_33B]
 gi|262294891|gb|EEY82823.1| methylase MraW [Bacteroides sp. 2_1_33B]
          Length = 305

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 167/307 (54%), Gaps = 17/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPV+L + +  L+  P  + +D TFG GG+SR   K   +   +   D+D  A     
Sbjct: 8   YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSRKILKRLGSEGELYGFDQDADA----- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F+  ++ F  L +++        VDG++ DLGVSS   D  DRGFSF+  G
Sbjct: 63  EHNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T ++
Sbjct: 123 ALDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIEE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++
Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAK
Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 299 LRIAEKV 305


>gi|323350327|ref|ZP_08085992.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis VMC66]
 gi|322123512|gb|EFX95183.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis VMC66]
          Length = 316

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|255037275|ref|YP_003087896.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM
           18053]
 gi|254950031|gb|ACT94731.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM
           18053]
          Length = 305

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 8/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +      HVPV+L + +  L   P  + +D TFG GG+SR+  +      ++  D+DP A
Sbjct: 1   MDSPSTYHVPVMLSECLEGLQIQPDGIYVDVTFGGGGHSRAILEKLTTGRLLVFDQDPDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            S   E   D +  F         +         V+G++ DLGVSS QI+  +RGFS + 
Sbjct: 61  ASNALEFKDDQRFTFIPANFRHLKRYLKLNKAPLVNGILADLGVSSHQINTPERGFSTRF 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM+ +   +A +V+   +  +L RILG+ GE   A   A AI+  R ++  +T 
Sbjct: 121 DADLDMRMNPNIEKTAREVLKTRSAAELQRILGMYGEVTNARTAAEAIIAARYNSQIETV 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL  ++ +     + N+     + FQALRI VN+E+  L + L    + L   G L+V+
Sbjct: 181 NDLKGILMRYAPKHRENK--YFAQVFQALRIEVNDELAVLEEFLAQVPEVLAPDGRLVVM 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK +           +    +   P   +S+T+K +  T E++A N R+RS
Sbjct: 239 SYHSLEDRLVKNYIQKGKFYGEVEKDFYGNEIKP--LKSVTRKPIEATAEEIAVNPRARS 296

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 297 AKLRIAEK 304


>gi|152996635|ref|YP_001341470.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1]
 gi|263456400|sp|A6VYK6|RSMH_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150837559|gb|ABR71535.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1]
          Length = 312

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 182/314 (57%), Gaps = 9/314 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +  T+ +H+ V+L + + +L      + +D TFG GG++R          ++  D+DP A
Sbjct: 1   MTKTMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFS 126
           +  G+  +     +FS+ Q +F+ + +++ +      VDGV+ DLGVSS QID  +RGFS
Sbjct: 61  IGHGK-LLEQEDARFSIVQDSFANMAEHITNVFGVDRVDGVMMDLGVSSPQIDDAERGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM+   G SA++ +   + KD+  ++   GEE+ + RIA AI + R   P 
Sbjct: 120 FMNDGPLDMRMNPDKGQSAAEWIATVSEKDMADVMYQYGEERFSRRIAKAICEYRSHTPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  LS +I +     +  + +PATR+FQ +RI++NNE+ +L  GL +A +ALK GG L
Sbjct: 180 LTTLQLSKIIAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEIGLEAAAQALKVGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+SFHSLEDR+VK+F   ++      RH+   NAH  +      K + P+Q +V+ N R
Sbjct: 239 AVISFHSLEDRIVKRFMKLQAKGPELPRHLPIRNAHLDIKFKTVGKAIKPSQSEVSENVR 298

Query: 306 SRSAKLRAGMRTVE 319
           SRSA LR   R  +
Sbjct: 299 SRSAVLRVLERVSD 312


>gi|257468236|ref|ZP_05632332.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062518|ref|ZP_07927003.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC
           49185]
 gi|313688194|gb|EFS25029.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC
           49185]
          Length = 313

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 169/317 (53%), Gaps = 13/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M   I      H+PVL  + I  L      + LD T G GG+S    K       +I++D
Sbjct: 1   MEEIISE---YHIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISID 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           +D  A+   ++ +  Y  ++ +F+  F  L   +       +DG++ D+GVSS Q+D  +
Sbjct: 58  QDQQAIDFAKKRLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPE 117

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS++    LDMRM+ +   SA +VVN+ + + L +IL   GEE+ + RIA  I + R+
Sbjct: 118 RGFSYRYDTKLDMRMNQNNPLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEARE 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               +TT +L ++I++   + +    HPA ++FQA+RI VN E+E L + +  A  +LK 
Sbjct: 178 IKKIETTGELVAIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKV 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L +++FHSLEDRLVK  F   +          I      A  + ITKK ++P   +V
Sbjct: 236 GGRLGIITFHSLEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEV 295

Query: 301 AFNRRSRSAKLRAGMRT 317
            FN R+ S+KLR   R 
Sbjct: 296 EFNNRAHSSKLRVVERI 312


>gi|86148532|ref|ZP_01066819.1| S-adenosyl-methyltransferase [Vibrio sp. MED222]
 gi|218708478|ref|YP_002416099.1| S-adenosyl-methyltransferase MraW [Vibrio splendidus LGP32]
 gi|263505899|sp|B7VIZ5|RSMH_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85833678|gb|EAQ51849.1| S-adenosyl-methyltransferase [Vibrio sp. MED222]
 gi|218321497|emb|CAV17449.1| S-adenosyl-methyltransferase mraW [Vibrio splendidus LGP32]
          Length = 316

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P    +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM   +GI  S  + +A++ D+T ++   GE+K A RIA  I+  +++     
Sbjct: 120 KDGPLDMRMDPTTGIPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           + V+SFHSLEDR+VK+F    S        +  +                K + P++++V
Sbjct: 240 ISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPIGKAIKPSKDEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DENTRSRSSVLRIAEK 315


>gi|296877054|ref|ZP_06901095.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC
           15912]
 gi|296431915|gb|EFH17721.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC
           15912]
          Length = 316

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFDQDQHAIENAKI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  +  K   +  +  F  L++ + D     ++G+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPFIEKGMVTFIKDNFRHLKERLNDIGVTEINGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + I +K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELINRKPILPSEEELEENNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|327462427|gb|EGF08752.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1057]
          Length = 316

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S           ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPEGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  +   +  +  F  L+  + +   + +DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P++E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|87122635|ref|ZP_01078512.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121]
 gi|86162093|gb|EAQ63381.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121]
          Length = 313

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 178/315 (56%), Gaps = 10/315 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +  +I  H+ V+L + +  L   P    +D TFG GG+SR   +      ++  D+DP A
Sbjct: 1   MTESIPVHISVMLNESVEDLITDPNGNYIDGTFGRGGHSRLVLQKLENGKLLGFDKDPVA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGF 125
           +  G+  +     +F + Q +F+ +  Y+         +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  IEYGKA-LEGEDARFQIVQDSFASMDQYIASHLDESGKLDGVLMDLGVSSPQLDDAERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF   GPLDMRM+   G+SA+  + QA  K++  ++   GEE+ + RIA AI + R    
Sbjct: 120 SFMNDGPLDMRMNPGVGLSAAQWIAQAKEKEIADVMYQYGEERFSRRIAKAICEYRAHTE 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+++++      +  + +PATR+FQ +RIF+NNE+ +L  GL SA  ALK GG 
Sbjct: 180 ILTTLQLANIVKDANPAWEKGK-NPATRAFQGIRIFINNELGDLETGLESAANALKVGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F  + S      RH+   N   ++      K + P++++V  N 
Sbjct: 239 LVVISFHSLEDRIVKRFMKTMSKGPDLPRHLPIRNTELSIKFKTIGKAIKPSKQEVDDNV 298

Query: 305 RSRSAKLRAGMRTVE 319
           RSRSA +R   R  +
Sbjct: 299 RSRSAVMRVLERVSD 313


>gi|240126238|ref|ZP_04739124.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|254494330|ref|ZP_05107501.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291]
 gi|268595426|ref|ZP_06129593.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|268597236|ref|ZP_06131403.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|268599411|ref|ZP_06133578.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|268682771|ref|ZP_06149633.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|268684819|ref|ZP_06151681.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|291043143|ref|ZP_06568866.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
 gi|262831552|sp|B4RQD7|RSMH_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226513370|gb|EEH62715.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291]
 gi|268548815|gb|EEZ44233.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|268551024|gb|EEZ46043.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|268583542|gb|EEZ48218.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|268623055|gb|EEZ55455.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|268625103|gb|EEZ57503.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|291012749|gb|EFE04732.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
          Length = 318

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 112/324 (34%), Positives = 171/324 (52%), Gaps = 15/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S          +  ++      + + +  + P + +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGR-ALKPGEAE 294

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           +A N R+RSA LR   RT     E
Sbjct: 295 IAANPRARSAVLRVAERTAGPIPE 318


>gi|113971906|ref|YP_735699.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4]
 gi|122943466|sp|Q0HE75|RSMH_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113886590|gb|ABI40642.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4]
          Length = 313

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK+F    S        +  +       + +    K ++P+ E++  
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|262527565|sp|P62471|RSMH_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 315

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H  VLL + I  LNP  G + +DATFG GG++R      +   VI  D+D +A+S 
Sbjct: 1   MKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISM 60

Query: 74  GQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E+         + +  L    F  L++         G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  
Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT DL  +I+  +    + +  HPA +SFQA+R+ VN+E+  L + L  A K LK G
Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +         + I++K ++ + +++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|329921076|ref|ZP_08277599.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G]
 gi|328934983|gb|EGG31472.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G]
          Length = 315

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 13/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE- 76
           H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++ 
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 77  ----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N RS
Sbjct: 245 VITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEENNRS 304

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 305 HSAKLRVAEK 314


>gi|212712749|ref|ZP_03320877.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM
           30120]
 gi|212684665|gb|EEB44193.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM
           30120]
          Length = 317

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 168/320 (52%), Gaps = 16/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A+   QE       +F +    FS + DYV ++     +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQEI---NDPRFMIKHGPFSAIADYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA   +  A   D+  +L   GEE+ + RIA AIV+R  +  
Sbjct: 118 SFMRDGPLDMRMDPTRGQSAQQWLMTAEADDIAWVLKTFGEERFSKRIARAIVERNHNPE 177

Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +  T     + +   V   K+   HPATRSFQA+RI++N+E+EE+ + L  A   L   
Sbjct: 178 EEPLTRTRHLAELIAKVSPIKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPE 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQED 299
           G L V+SFHSLEDRLVK+F    S        +  + A        +      + P++ +
Sbjct: 238 GRLSVISFHSLEDRLVKRFIRQNSTGPSVPAGIPLTEAQIKELGAAKLRALGKMKPSELE 297

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           +  N R+RS+ LR   R VE
Sbjct: 298 IDENPRARSSVLRFAERAVE 317


>gi|109899828|ref|YP_663083.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c]
 gi|123170716|sp|Q15Q09|RSMH_PSEA6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109702109|gb|ABG42029.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c]
          Length = 311

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+ VLL++ I  L   P  V LDATFG GG+++           +IALDRDP A+ 
Sbjct: 3   TQPSHLSVLLQESIDGLAIKPDGVYLDATFGRGGHTKQILSQLSPNGRLIALDRDPSAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQ 128
             +    D +  FS+    FS+++D +    +     G++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKALADDAR--FSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM+   G SA+  +  A  +D+ +++   GEEK   RIAH IV  RQ AP  T
Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQEAPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I   V   K+   HPATRSFQ +RI++N+E++E+  GL++A  +L +GG L V
Sbjct: 181 TAQLAEIIDLAV-PVKDKFKHPATRSFQGIRIYINSELDEIRTGLKAALNSLNSGGRLSV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFNRR 305
           +SFHSLEDRLVK+F   +S  +     +    A     +      K + P+ ++++ N R
Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQAEIDSHKAMKAIGKAIKPSSDELSRNVR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   +
Sbjct: 300 ARSSVLRVAEK 310


>gi|319892166|ref|YP_004149041.1| rRNA small subunit methyltransferase H [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161862|gb|ADV05405.1| rRNA small subunit methyltransferase H [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464735|gb|ADX76888.1| S-adenosyl-methyltransferase MraW [Staphylococcus pseudintermedius
           ED99]
          Length = 311

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ VLL++ +  LN     V +D T G  G+S+           +IA+D+D  A++ 
Sbjct: 1   MFHHISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSDEGRLIAIDQDMTAINH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++    + +     F  L + + +     VDG+++DLGVSS Q+D  +RGFS+Q +
Sbjct: 61  AKEKLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLGVSSPQLDVPERGFSYQHN 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   SA +VVN  + + L +I    GEEK + +IA  I  RRQ  P +TT 
Sbjct: 121 AKLDMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFSKQIARKIEARRQQQPIETTF 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL + I++ +   ++    HPA R FQA+RI VN+E+      L  A   +K  G + V+
Sbjct: 181 DLVACIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELAAFEDSLEQAIDHVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R +     A+    + + +K +V    D+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTPKLKRVNRKPIVADATDLEDNHRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
          Length = 317

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 186/310 (60%), Gaps = 5/310 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H PVLL +V+  L P  G VI+DATFGAGGY+R+    G+ VIALDRDP         
Sbjct: 4   APHAPVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGATVIALDRDPTVQPHADAV 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             D+  +F+L +  FS L D   D     +DG+VFD+GVSSMQ+D  +RGFSF + GPLD
Sbjct: 64  ANDHPGRFTLVRTPFSGLADAFADSGAARLDGIVFDIGVSSMQLDEAERGFSFMRDGPLD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D+VN  +   L  IL   G+E+Q+ RIA AI++RR   PF  T DL+ +
Sbjct: 124 MRMSRDGDSAADIVNTWDHGPLAHILKQYGDERQSGRIATAILRRRTVQPFTRTLDLADV 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ +   +    HPATR+FQALRI VN+E+ EL  GL++AE AL  GG L VV+FHSLE
Sbjct: 184 VERALGGRRGAPTHPATRTFQALRIAVNDELGELTAGLQAAEAALSPGGRLAVVTFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK F   R+G         P         F    K      + ++A N R+RSAKLR
Sbjct: 244 DRIVKAFLTERTGNAPGGSRHAPMAVETRKPSFTLSFKGAREAGEAELAANPRARSAKLR 303

Query: 313 AGMRTVERSI 322
           A +RT   + 
Sbjct: 304 AAVRTDAPAW 313


>gi|238855278|ref|ZP_04645597.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3]
 gi|260664637|ref|ZP_05865489.1| MraW methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932429|ref|ZP_06337854.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|313471907|ref|ZP_07812399.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153]
 gi|238832170|gb|EEQ24488.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3]
 gi|239529171|gb|EEQ68172.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153]
 gi|260561702|gb|EEX27674.1| MraW methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303378|gb|EFA95555.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
          Length = 317

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 167/314 (53%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           T   H  VLL + I  LN     + +DATFG GG++R      +N  ++  D+D +A++ 
Sbjct: 3   TNFKHTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAINA 62

Query: 74  GQETMRD-----YKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++   D     ++    +    FS     L     + G+DG+ +DLGVSS Q D  DRG
Sbjct: 63  AKDNFYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPDRG 122

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM+      A  VVN  +   L  IL   G+EK + +IA  IV+RRQ  
Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQQK 182

Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  LI++ +  +K     HPA +SFQA+R+ VN+E++ L   L+ A + LK G
Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLKPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +  +      + + +K ++ T  ++A 
Sbjct: 243 GRISVITFQSHEDKIVKKIFKQNSEVEVPRGIPVIPDNLKPKLKLVNRKPILATASELAD 302

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 303 NNRSHSAKLRVAEK 316


>gi|322391027|ref|ZP_08064531.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus parasanguinis ATCC 903]
 gi|321142257|gb|EFX37731.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus parasanguinis ATCC 903]
          Length = 316

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFDQDQHAIENAKI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  +  K   +  +  F  L++ + +     +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPFIEKGMVTFIKDNFRHLKERLNELGVTEIDGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNSYDYHDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + + +K ++P++E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVNRKPILPSEEELEENNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|261378431|ref|ZP_05983004.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685]
 gi|269145209|gb|EEZ71627.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685]
          Length = 319

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 116/321 (36%), Positives = 171/321 (53%), Gaps = 13/321 (4%)

Query: 13  IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           +  T G  H+ VLL + +  L      V +D TFG GG+SR           +I  D+DP
Sbjct: 1   MSETEGYQHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDTGRLIVFDKDP 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            A++  +E +    ++ S+    F+  Q  + D     VDG +FDLGVSS QID   RGF
Sbjct: 61  QAIAVAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAVRGF 119

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P
Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRTENP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ +  + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG 
Sbjct: 180 IDTTGKLAKIAAENV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKEGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           L V++FHSLEDR+VK+F    S      R   +  ++      +++  K + P +E+   
Sbjct: 239 LAVIAFHSLEDRIVKQFVRKYSQHAPLPRWAAVREADLPEPPLKAV-GKAIKPCEEETVA 297

Query: 303 NRRSRSAKLRAGMRTVERSIE 323
           N R+RSA LR   RT     E
Sbjct: 298 NPRARSAVLRVAERTAGPIPE 318


>gi|117922183|ref|YP_871375.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3]
 gi|262826555|sp|A0L1Q0|RSMH_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117614515|gb|ABK49969.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3]
          Length = 313

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTILAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK+F    S        +  +       + +    K ++P+ E++  
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|154505717|ref|ZP_02042455.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149]
 gi|153794014|gb|EDN76434.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149]
          Length = 315

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/318 (31%), Positives = 168/318 (52%), Gaps = 12/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M  ++      H  VLLE+ +  L   P  + +DAT G GG++             I +D
Sbjct: 1   MEDSM---AFKHTSVLLEETVDGLKVKPDGIYVDATLGGGGHAYEVASRLSDKGRFIGID 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           +D  A+      +  + E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +
Sbjct: 58  QDADAIEAAGARLSGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGIVIDLGVSSYQLDTAE 117

Query: 123 RGFSFQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS++   PLDMRM     + + D+VN  +  +L R++   GE+K A  IA  IV  R 
Sbjct: 118 RGFSYRTDAPLDMRMDQRQTTTAKDIVNDYSEAELYRVIRDYGEDKFAKNIAKHIVMERG 177

Query: 182 SAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             P +TT  L+ +I++ +    +    HP+ R+FQA+RI +N E++ L + L      L 
Sbjct: 178 KHPIETTGQLNEVIRRAIPMKFQKTSGHPSKRTFQAIRIELNRELDVLRETLDDMIDMLN 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299
            GG + +++FHSLEDR+VK  F           H       + +  + IT+K ++P++E+
Sbjct: 238 PGGRICIITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGNISKGKVITRKPILPSEEE 297

Query: 300 VAFNRRSRSAKLRAGMRT 317
           + +N RS+SAKLR   R+
Sbjct: 298 LMYNSRSKSAKLRIFERS 315


>gi|126172646|ref|YP_001048795.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155]
 gi|152998944|ref|YP_001364625.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185]
 gi|160873530|ref|YP_001552846.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195]
 gi|217971625|ref|YP_002356376.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223]
 gi|304411651|ref|ZP_07393263.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183]
 gi|307306297|ref|ZP_07586042.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175]
 gi|262826489|sp|B8E4L2|RSMH_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826490|sp|A3CZL3|RSMH_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826491|sp|A6WIC3|RSMH_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826492|sp|A9KY21|RSMH_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125995851|gb|ABN59926.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155]
 gi|151363562|gb|ABS06562.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185]
 gi|160859052|gb|ABX47586.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195]
 gi|217496760|gb|ACK44953.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223]
 gi|304349839|gb|EFM14245.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183]
 gi|306911170|gb|EFN41597.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175]
 gi|315265760|gb|ADT92613.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS678]
          Length = 313

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQVLQQLGENGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFMRDGPLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  SK    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKSKERNKHPATRVFQAIRIYINSELDQIDQALEGAVNVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L V+SFHSLEDR+VK+F    S           +       + +    K ++P+ E++  
Sbjct: 237 LSVISFHSLEDRIVKRFIRRHSQGESVPHGFPVTEDQINKSRKLRAVGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|291542210|emb|CBL15320.1| S-adenosyl-methyltransferase MraW [Ruminococcus bromii L2-63]
          Length = 307

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 168/304 (55%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLLE+ +  L      + +D T G GG+S           +I++D+DP A+    E 
Sbjct: 5   HIPVLLEQAVDALAVKENGIYVDGTAGGGGHSSEILSRLTTGKLISIDQDPDAILTLTER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +    + +  F+ +   +  +    VDGV+ D+GVSS Q+D  +RGFSF +  PLD
Sbjct: 65  FKKNENSIII-KGNFADMVSLLHSRGVGRVDGVLLDIGVSSHQLDTAERGFSFHEDAPLD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG +A+++VN     +L RIL + GEEK A  I + IVK R   P +TT +L+ +
Sbjct: 124 MRMSQSGTTAAELVNTLPAGELRRILSVYGEEKFAVAIVNGIVKARAEKPIETTLELAEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I++ V        HPA +SFQALRI VN+E+  L +GL  A + L +GG L V++FHSLE
Sbjct: 184 IKENVPQRVRRDGHPARKSFQALRIAVNDELGVLERGLDGAFELLGSGGRLAVITFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+  AS        +        +    + + +K V   + ++  N R+RSAKLR 
Sbjct: 244 DRIVKQKMASWCQGCTCPKDFPVCVCGNKPKAKLVVRKPVCANETELRNNPRARSAKLRI 303

Query: 314 GMRT 317
             + 
Sbjct: 304 CEKI 307


>gi|253580157|ref|ZP_04857424.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848676|gb|EES76639.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA]
          Length = 311

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 151/310 (48%), Gaps = 8/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  VLLE+ I  L+  P  + +D T G  G++             I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLEETIEGLDIKPDGIYVDGTLGGAGHAGEVCRKLSAKGRFIGIDQDQDAII 60

Query: 73  CGQETMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              E +  YK+            Q         VDG++ DLGVSS Q+D  +RGF+++  
Sbjct: 61  AASERLAPYKQATIIRSNYCYMVQELAARGIYKVDGILLDLGVSSYQLDNEERGFTYRVD 120

Query: 131 GPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       + D+VN    K+L RI+   GE+K A  IA  IV  RQ  P  TT 
Sbjct: 121 APLDMRMDQRQTQTAGDIVNGYEEKELYRIIRDYGEDKFAKNIAKHIVAARQVKPITTTG 180

Query: 190 DLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ +I++++      +  HPA R+FQA+RI +N E++ L   L      L  GG L ++
Sbjct: 181 ELTEIIRESIPMKMQVKSGHPAKRTFQAIRIELNRELDVLRDSLDGMIDILDDGGRLCII 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F                     +  + IT+K ++P + ++  N RS+
Sbjct: 241 TFHSLEDRIVKTIFRKNENPCTCPSDFPVCVCGKKSKGKVITRKPILPGETEMEENPRSK 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRIFERV 310


>gi|325956496|ref|YP_004291908.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus
           30SC]
 gi|325333061|gb|ADZ06969.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus
           30SC]
          Length = 315

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 162/314 (51%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG++R          +I  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKS 60

Query: 74  GQETMRD-----YKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +    D      + +  L    F+ LQ    +     G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AKLNFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM     + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  
Sbjct: 121 FSYRYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIAHKIVERRKDK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQALR+ VN+E++ L   L  A K L+ G
Sbjct: 181 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +        +      + + +K +  +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEK 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|283379446|dbj|BAI66129.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae]
 gi|283379452|dbj|BAI66134.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae]
          Length = 314

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 12/317 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLL + +  L      V +D TFG GG+SR           +I  D+DP A++
Sbjct: 1   ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+ 
Sbjct: 61  VAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRF 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT
Sbjct: 120 DAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V+
Sbjct: 180 RKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+F    S          +  ++      + + +  + P + ++A N R+
Sbjct: 239 AFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGR-ALKPGEAEIAANPRA 297

Query: 307 RSAKLRAGMRTVERSIE 323
           RSA LR   RT     E
Sbjct: 298 RSAVLRVAERTAGPIPE 314


>gi|229827494|ref|ZP_04453563.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC
           49176]
 gi|229788432|gb|EEP24546.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC
           49176]
          Length = 322

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 12/323 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
            MS  I      H+P++LE+VI  L+  P  + +D T G GG+S    K    G  +I +
Sbjct: 2   FMSENIE---FKHIPIMLEEVIEGLDIKPNGIYVDGTLGGGGHSYEIAKRLVSGGRLIGI 58

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
           D+D  A+      + ++ ++  + ++ ++Q+   +     + VDG++ DLGVSS Q+D  
Sbjct: 59  DQDEAAIKAAGARLSEFGDRVIIVRSNYAQMVSVLQSLGIEQVDGILLDLGVSSHQLDNA 118

Query: 122 DRGFSFQKSGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+ +   LDMRM       +  +VN  +  +LTRI+   GE++ A++I   I+  R
Sbjct: 119 ERGFSYMEDALLDMRMDRRQEKTARDIVNYYSQAELTRIIRDYGEDRFAAKIVAKIIDFR 178

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           ++ P +TT +L+ +I+  +         HPA R+FQA+RI +N E+  L + +      L
Sbjct: 179 ENKPVETTGELAEIIKSAIPVKYRLTGGHPAKRTFQAIRIELNRELGVLEESIEGMLDIL 238

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298
             GG + V++FHSLEDR+VK  F                     +     ++K ++P+ E
Sbjct: 239 SDGGRMAVIAFHSLEDRIVKSAFKKAESPCTCPPDFPICVCGKKSKGFVASRKPLIPSDE 298

Query: 299 DVAFNRRSRSAKLRAGMRTVERS 321
           +   N R++S+KLR  +R  E +
Sbjct: 299 ETERNPRAKSSKLRIFVRKREEN 321


>gi|197285925|ref|YP_002151797.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320]
 gi|227356432|ref|ZP_03840820.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906]
 gi|262824977|sp|B4F119|RSMH_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194683412|emb|CAR44158.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320]
 gi|227163542|gb|EEI48463.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 315

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 119/320 (37%), Positives = 168/320 (52%), Gaps = 18/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTTNNFSHTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++   E       +FS+    FS ++ Y+ +      VDGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIAVANEI---DDPRFSIIHGPFSNIEHYINELGLSGKVDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM   +G SA+  +  A   D+T +L   GEE+ A RIA AIV R ++  
Sbjct: 118 SFMRDGPLDMRMDPTTGQSAAQWLMNAEEDDITWVLKTFGEERFAKRIARAIVARNKTEE 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +       K    HPATRSFQA+RI++N+E++E+ + L+ A   L   G 
Sbjct: 178 PLTRTKQLADLISEASPVKERHKHPATRSFQAIRIYINSELDEIEKALKGAVSILAPAGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299
           L V+SFHSLEDRLVK+F    S   +    +  +             SI K  + PT  +
Sbjct: 238 LSVISFHSLEDRLVKRFIRDESKGPVVPAGIPLTEEQIKALGSARLSSIHK--MKPTGVE 295

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           V  N R+RS+ LR   R  E
Sbjct: 296 VEENPRARSSVLRVAQRIEE 315


>gi|84394442|ref|ZP_00993158.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01]
 gi|84374941|gb|EAP91872.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01]
          Length = 316

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 164/316 (51%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P    +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM   +G+  S  + +A++ D+T ++   GE+K A RIA  I+  +++     
Sbjct: 120 KDGPLDMRMDPTTGVPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           + V+SFHSLEDR+VK+F    S        +  +                K + P++++V
Sbjct: 240 ISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEDQIKALGSADLKPIGKAIKPSKDEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DENTRSRSSVLRIAEK 315


>gi|225023749|ref|ZP_03712941.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC
           23834]
 gi|224943631|gb|EEG24840.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC
           23834]
          Length = 318

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 114/321 (35%), Positives = 172/321 (53%), Gaps = 12/321 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HV VLL + +  L   PG V +D TFG GG+SR           ++  D+DP 
Sbjct: 1   MSAQELAHVTVLLHEAVDALEVKPGGVYVDGTFGRGGHSRLILSKLGANGRLVVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++  ++ + +  ++  +    FS  Q  +     + VDG +FDLGVSS QID  +RGFS
Sbjct: 61  AIAVARQ-LAEVDKRVQVVHGGFSGFQVALKGLGIEAVDGALFDLGVSSPQIDDAERGFS 119

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G +A+  + +A  +++  ++   GEE+  S+IA AIV++RQ  P 
Sbjct: 120 FRYDAPLDMRMDTTRGQTAAQWLAEAGEEEIREVIRDYGEERFNSQIARAIVQQRQERPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ L  + V  ++     PATR+FQA+RIF+N E+EE++  L  A   LK GG L
Sbjct: 180 LTTGQLAQLAAQAV-RTRERGQDPATRTFQAIRIFINRELEEISAVLPQAAGYLKTGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+VK+F    S      + ++   S       + I  K    +  + A N
Sbjct: 239 AVIAFHSLEDRIVKQFIRRHSRPTPLPKWVMVRESERPEPPLREI-GKAQRASAAETAAN 297

Query: 304 RRSRSAKLRAGMRTVERSIED 324
            R+RSA LR   RT     ++
Sbjct: 298 PRARSAVLRVAERTAGEFADE 318


>gi|28897226|ref|NP_796831.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839039|ref|ZP_01991706.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810]
 gi|260366064|ref|ZP_05778530.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030]
 gi|260878319|ref|ZP_05890674.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034]
 gi|260896408|ref|ZP_05904904.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus
           Peru-466]
 gi|260899187|ref|ZP_05907582.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037]
 gi|33301414|sp|Q9AJH1|RSMH_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13537263|dbj|BAB40616.1| hypothetical protein [Vibrio parahaemolyticus]
 gi|28805435|dbj|BAC58715.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747467|gb|EDM58415.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810]
 gi|308087564|gb|EFO37259.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus
           Peru-466]
 gi|308093183|gb|EFO42878.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034]
 gi|308107133|gb|EFO44673.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037]
 gi|308111365|gb|EFO48905.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030]
          Length = 316

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 170/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV+ R++   + 
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G 
Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A              K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|15900265|ref|NP_344869.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae TIGR4]
 gi|111657194|ref|ZP_01407969.1| hypothetical protein SpneT_02001591 [Streptococcus pneumoniae
           TIGR4]
 gi|262827209|sp|P0CB58|RSMH_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14971807|gb|AAK74509.1| yllC protein [Streptococcus pneumoniae TIGR4]
          Length = 316

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQACLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVVRKI 314


>gi|24375712|ref|NP_719755.1| S-adenosyl-methyltransferase MraW [Shewanella oneidensis MR-1]
 gi|30173050|sp|Q8E9P0|RSMH_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24350646|gb|AAN57199.1|AE015855_10 conserved hypothetical protein TIGR00006 [Shewanella oneidensis
           MR-1]
          Length = 313

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++       +F +    F QL DYV D      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 60  AIEAAKQF--ADDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+  + +A ++D+  +    GEEK A  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+DL+ LI + +  +K    HPATR FQA+RI++N+E++++ Q L  A   L   G 
Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK+F    S        +  +       + +    K ++P+ E++  
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NARARSSVLRIAER 310


>gi|83592294|ref|YP_426046.1| s-adenosyl-methyltransferase MraW [Rhodospirillum rubrum ATCC
           11170]
 gi|123753270|sp|Q2RVT6|RSMH_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83575208|gb|ABC21759.1| methyltransferase [Rhodospirillum rubrum ATCC 11170]
          Length = 326

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 137/324 (42%), Positives = 193/324 (59%), Gaps = 16/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           M++     +  H PV+L++V++ L P    + +D TFG GGYSR   +     VIA+DRD
Sbjct: 1   MNA-----LTPHFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERADCRVIAIDRD 55

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRG 124
           P A   G     ++  +F+L    F  ++          +DGV  DLGVSSMQ+D  +RG
Sbjct: 56  PAARVRGAALEAEFPGRFTLLSGCFGDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERG 115

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQK GPLDMRM   G +A+D+VN  +   L  IL   GEE+++  +AHAIV+RR   P
Sbjct: 116 FSFQKDGPLDMRMGQQGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAETP 175

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL+++I+  V  S++  I PATRSFQALRI VN+E+ EL + L ++E+ L+AGG 
Sbjct: 176 FSRTADLATVIRGVVRKSRDG-IDPATRSFQALRIVVNDELGELERALGASERLLRAGGR 234

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQE 298
           L+VV+FHSLEDR+VK F   R G+   V   +P          P  FQ+++++ V P   
Sbjct: 235 LVVVAFHSLEDRIVKAFVRQRCGESEGVSRHLPQASNAGAGNPPPSFQAVSRRAVKPLDA 294

Query: 299 DVAFNRRSRSAKLRAGMRTVERSI 322
           +   N RSRSA+LRA  RT   + 
Sbjct: 295 ETRVNPRSRSARLRAVERTEFPAW 318


>gi|312871981|ref|ZP_07732063.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092558|gb|EFQ50920.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2062A-h1]
          Length = 315

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 1   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|226323690|ref|ZP_03799208.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758]
 gi|225207874|gb|EEG90228.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758]
          Length = 311

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  VLL++ I  LN  P  + +D T G GG++           + I +D+D  A+ 
Sbjct: 1   MAFKHKSVLLDETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLNNKGSFIGIDQDAAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                + D+ E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  DRGFS++ 
Sbjct: 61  AAGTRLSDFGERVTIIRSNYCDMKSRLHEKGIDKVDGIVLDLGVSSYQLDTADRGFSYRV 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      SA ++VN  +  DL RI+   GE+K A  IA  IV  R+  P +TT
Sbjct: 121 DAPLDMRMDTRQTLSAKEIVNGYSEMDLFRIIRDYGEDKFAKNIAKHIVMAREKGPIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I++++    +    HPA R+FQA+RI  N E+E L   L      L  GG + +
Sbjct: 181 GQLAEIIRQSIPMKFQKMSGHPAKRTFQAIRIECNRELEVLRDSLDDMIDILNPGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F              +      +  + ITKK ++P++E++  N RS
Sbjct: 241 ITFHSLEDRIVKGIFKKNENPCTCPSTFPVCVCGKVSKGKVITKKPILPSEEEMEVNSRS 300

Query: 307 RSAKLRAGMRT 317
           +SAKLR   R 
Sbjct: 301 KSAKLRIFERV 311


>gi|90020487|ref|YP_526314.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40]
 gi|123277667|sp|Q21MH7|RSMH_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89950087|gb|ABD80102.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40]
          Length = 312

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 170/311 (54%), Gaps = 12/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H  VLL++ +  L   P    +D TFG GG+SR+          +  +D+DP AV+
Sbjct: 2   NESPHFSVLLQESVESLVVDPAGTYVDGTFGRGGHSRAILAKLGPEGKLFGIDKDPEAVA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
            G+  +     +F +   +F+ L+            G+ GV+ DLGVSS Q+D  +RGFS
Sbjct: 62  VGKA-LEAEDSRFRIVHGSFADLKHIDLLQADFAAGGLSGVLVDLGVSSPQLDVAERGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM+   G++A++ +N A  +D+ ++L   GEE+ +  +A AIV+RR+  PF
Sbjct: 121 FMNDGPLDMRMNTEAGMTAAEWINTAKQEDIAQVLWEYGEERFSRHMAKAIVERREIKPF 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T D + +++      +  + HPATR+FQA+RIF+N E+E+L Q L  +   L  GG  
Sbjct: 181 TRTHDFAEVVKAANRKWEKGK-HPATRAFQAVRIFINRELEDLRQLLDDSVSVLAPGGRF 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFHSLEDR+VK+FF  +S      + +  +         I  K +     ++  N R
Sbjct: 240 VVISFHSLEDRMVKRFFRDQSMGKQFPKGLPVTEEMKKQNLKIIGKALKAGDTELTQNIR 299

Query: 306 SRSAKLRAGMR 316
           SRSA +R G R
Sbjct: 300 SRSAVMRVGER 310


>gi|59712816|ref|YP_205592.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri ES114]
 gi|68565406|sp|Q5E2P2|RSMH_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|59480917|gb|AAW86704.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Vibrio fischeri ES114]
          Length = 316

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 18/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                HV VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +        +F++    FS L+ YV +      +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAKTI---TDPKFTIIHGPFSGLKQYVEELDLVGKIDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR---RQSA 183
            K GPLDMRM  + GI  S  + +A+V+D+T ++   GE+K A RIA  IV      ++ 
Sbjct: 119 MKDGPLDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYLENEENE 178

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T  L+ LI +    S   + HPATR+FQA RI++N+E++E+   L+ A   L   G
Sbjct: 179 PLTRTSQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299
            L V+SFHSLEDR+VK F    S        +  +                K + PT+ +
Sbjct: 239 RLSVISFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N RSRS+ LR   R
Sbjct: 299 VNENVRSRSSVLRIAER 315


>gi|227327098|ref|ZP_03831122.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 314

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 176/314 (56%), Gaps = 18/314 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+ 
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS + +YV +      +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AARAI---DDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V
Sbjct: 180 TKELAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F   +S        +  +            +++ KK ++P++E+VA 
Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEEEVAE 297

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 298 NPRARSSVLRFAER 311


>gi|317046889|ref|YP_004114537.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b]
 gi|316948506|gb|ADU67981.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b]
          Length = 313

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 121/315 (38%), Positives = 172/315 (54%), Gaps = 15/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNALNIREDGIYIDGTFGRGGHSRLILAQLGANGQLLAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++     +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEIK---DSRFSIVHGPFSALAEYVSERGLNGKIDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A   L  GG L 
Sbjct: 179 RTKELAEVI-AAATPVKDKFKHPATRSFQAIRIWINSELEEIDIALKGALSVLAPGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFN 303
           V+SFHSLEDRLVK+F   +S        +  +          +  T   +VP   +VA N
Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTETQLKALGGRELKTLGKMVPGDAEVADN 297

Query: 304 RRSRSAKLRAGMRTV 318
            R+RS+ LR   RT 
Sbjct: 298 PRARSSVLRIAERTA 312


>gi|311280938|ref|YP_003943169.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1]
 gi|308750133|gb|ADO49885.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1]
          Length = 313

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A +
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPEATA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS L DY  ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDPRFSIVHGPFSALADYAAERSLTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L +
Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLDVLAPGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDR+VK+F   +S        +  +          Q      ++P +E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGKLMPGEEEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRIAERTNA 313


>gi|254292761|ref|YP_003058784.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814]
 gi|254041292|gb|ACT58087.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814]
          Length = 336

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 138/334 (41%), Positives = 191/334 (57%), Gaps = 9/334 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +    G H+PVLLE V+  L P  G+V +D T+G GGYSR+        V+A+DRDP A+
Sbjct: 1   MTQE-GTHIPVLLEPVVEALAPTDGRVYIDGTYGGGGYSRAVMAVADCTVLAVDRDPDAM 59

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               +       +       F +L         + VDGV+ DLGVSS QID  +RGFSF 
Sbjct: 60  QRAWDH-AGKDPRLKPAPGRFGELDLAARAAGHEYVDGVMLDLGVSSYQIDQAERGFSFM 118

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G SA+D VN  + KDL  I    GEE  + RIA  IVKRR    F  T
Sbjct: 119 RDGPLDMRMEQHGPSAADAVNLLSEKDLASIFHFYGEEPASRRIAKFIVKRRDEEKFTRT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL++LI+ +V   +  + HPATR FQALR++VN+E+ EL + L ++E+ + +GG L+VV
Sbjct: 179 LDLANLIESSVGGRRGKKTHPATRVFQALRLYVNDELGELVRALVASEEIITSGGRLVVV 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK F   R G +       P         F+ + +K + PT E+VA N RS
Sbjct: 239 TFHSLEDRIVKTFLRERGGAMGGGSRHAPEAPAGKSPTFELVARKAIDPTDEEVAGNPRS 298

Query: 307 RSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           RS+KLR  +RT   +  + S ++  R+P+L    
Sbjct: 299 RSSKLRWAIRTDAPTWGEKSGLN-SRIPSLDVLE 331


>gi|168490031|ref|ZP_02714230.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195]
 gi|182683307|ref|YP_001835054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14]
 gi|221231213|ref|YP_002510365.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC
           700669]
 gi|298230654|ref|ZP_06964335.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|262827179|sp|B8ZL51|RSMH_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827224|sp|B2ISQ2|RSMH_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182628641|gb|ACB89589.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14]
 gi|183571591|gb|EDT92119.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195]
 gi|220673673|emb|CAR68164.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC
           700669]
 gi|332075180|gb|EGI85650.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA17570]
          Length = 316

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLRETGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVVRKI 314


>gi|154494023|ref|ZP_02033343.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC
           43184]
 gi|154086283|gb|EDN85328.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC
           43184]
          Length = 308

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 161/309 (52%), Gaps = 17/309 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
             +  HVPV+L + +  L+  P  V +D TFG GG+SR           +   D+D  A 
Sbjct: 4   KEVCYHVPVMLHESLEGLDIQPSGVYVDVTFGGGGHSREILNRLNDEGELYGFDQDADAE 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
                       +F   ++ F  L +++        VDG++ DLGVSS   D  DRGFSF
Sbjct: 64  KN-----IPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G +A+D+VN    + L  +  + GE K A ++A  +V+ R+    +
Sbjct: 119 RFDGALDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIE 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  D   +I+   +  K+       + FQALRI VN+E+  L + L+   + LK GG L+
Sbjct: 179 TIADFLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLV 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDRLVK F  + + +  A +    +   P  F+ +  KV+VP+ E++  N RS
Sbjct: 237 VITYHSLEDRLVKNFLKTGNFEGKAEQDFFGNIRSP--FRLVNNKVIVPSDEEIERNPRS 294

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 295 RSAKLRIAE 303


>gi|253583641|ref|ZP_04860839.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725]
 gi|251834213|gb|EES62776.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725]
          Length = 313

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 169/317 (53%), Gaps = 13/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M   I      H+PVL  + I  L      + LD T G GG+S    K       +I++D
Sbjct: 1   MEEIISE---YHIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISID 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           +D  A+   ++ +  Y  ++ +F+  F  L   +       +DG++ D+GVSS Q+D  +
Sbjct: 58  QDQQAIDFAKKRLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPE 117

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS++    LDMRM+ +   SA +VVN+ + + L +IL   GEE+ + RIA  I + R+
Sbjct: 118 RGFSYRYDTKLDMRMNQNNSLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEARE 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               +TT +L ++I++   + +    HPA ++FQA+RI VN E+E L + +  A  +LK 
Sbjct: 178 IKKIETTGELVAIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKI 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L +++FHSLEDRLVK  F   +          I      A  + ITKK ++P   +V
Sbjct: 236 GGRLGIITFHSLEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEV 295

Query: 301 AFNRRSRSAKLRAGMRT 317
            FN R+ S+KLR   R 
Sbjct: 296 EFNNRAHSSKLRVVERI 312


>gi|59801880|ref|YP_208592.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA 1090]
 gi|268601983|ref|ZP_06136150.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|268604315|ref|ZP_06138482.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|268687198|ref|ZP_06154060.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
 gi|293398479|ref|ZP_06642657.1| methylase MraW [Neisseria gonorrhoeae F62]
 gi|68565408|sp|Q5F6K7|RSMH_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|59718775|gb|AAW90180.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268586114|gb|EEZ50790.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|268588446|gb|EEZ53122.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|268627482|gb|EEZ59882.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291610950|gb|EFF40047.1| methylase MraW [Neisseria gonorrhoeae F62]
          Length = 318

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 112/324 (34%), Positives = 171/324 (52%), Gaps = 15/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS A       H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S          +  ++      + + +  + P + +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGR-ALKPGEAE 294

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           +A N R+RSA LR   RT     E
Sbjct: 295 IAANPRARSAVLRVAERTAGPIPE 318


>gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246]
          Length = 307

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTTKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKEDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|332076775|gb|EGI87237.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA17545]
          Length = 316

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
 gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
          Length = 330

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 139/321 (43%), Positives = 200/321 (62%), Gaps = 6/321 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG 74
               H+PVLL  ++A + P    V LD T GAGGY+R   + G+  V+ +DRDP A+   
Sbjct: 9   NTAPHIPVLLRPLLAAVAPVR-GVWLDGTLGAGGYARGLLEAGADQVVGVDRDPLALEMA 67

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E   +Y ++  L Q  F+Q+ DY  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 68  REWGAEYGDRLRLVQGNFAQMDDYAAD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLD 125

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G +A+D+VN  +  +L  IL + GEE+ + RIA AIVK R+  P ++T  L+ +
Sbjct: 126 MRMSQDGPTAADLVNTTDEAELADILYLYGEERASRRIARAIVKAREVTPIESTLQLTGI 185

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ +  SK  + H ATRSFQA+RI VN+E   L +GL +AE+AL+ GG L VV+FHS+E
Sbjct: 186 VERCLPRSKPGQAHVATRSFQAIRIAVNDEYGSLIEGLEAAERALRPGGQLAVVTFHSIE 245

Query: 255 DRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F   RS G     RH          F   ++K + P  +++A N R+RSA+LR 
Sbjct: 246 DRMVKRFMQLRSGGGGTGSRHAPEIEREAPQFSLKSRKAIGPDDDELAVNPRARSARLRV 305

Query: 314 GMRTVERSIEDD-SFVHLPRL 333
            +RT  R+   + S + +P L
Sbjct: 306 AVRTDVRAGRTERSQLGMPML 326


>gi|224536607|ref|ZP_03677146.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521698|gb|EEF90803.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 306

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 161/315 (51%), Gaps = 16/315 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           ++  +  HVPVLL+  +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MNEELTYHVPVLLKPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A              F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFS
Sbjct: 61  AEQN-----IVDNPHFIFVRSNFRYLHNFLRYHDIEEVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G +A+D++N  + + L  I  + GE K + ++A  +VK R     
Sbjct: 116 FRFDGALDMRMNKRAGDTAADIINTYDEERLADIFYLYGELKNSRKLASVLVKARAGQKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 TTIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNMMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPR 291

Query: 306 SRSAKLRAGMRTVER 320
           SRSAKLR   +  E 
Sbjct: 292 SRSAKLRIAEKKGEE 306


>gi|157803594|ref|YP_001492143.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str.
           McKiel]
 gi|167011837|sp|A8EYC5|RSMH_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157784857|gb|ABV73358.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str.
           McKiel]
          Length = 308

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 121/303 (39%), Positives = 178/303 (58%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
               H+PV+L +++A L P  GK  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MQQSHIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +   ++Y  +F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF    PLD
Sbjct: 61  ERIKQNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDSPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + +N    K+L  I+   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAKRIVEYRKTARINSTGKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI++N+E+ EL + L + +  L   G L++VSFHSLE
Sbjct: 181 VRNSI-GFRKGKIDPATKTFQAIRIYINDELRELERFLANVQNILNKDGRLVIVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A        P        + IT K   P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKHFFKENSEKPVARSKYSKDNPVIDPNKWLKIITNKAEAPSDKEVELNVRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|323491037|ref|ZP_08096229.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG
           20546]
 gi|323314701|gb|EGA67773.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG
           20546]
          Length = 316

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 114/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLDENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y  D      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIIHGPFSGMAEYAADYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K   RIA AIV  R++     
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHVRRIAKAIVAYRENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++++V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSADLKPVGKAIKPSKQEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EHNARSRSSVLRIAEK 315


>gi|184155045|ref|YP_001843385.1| cell division protein [Lactobacillus fermentum IFO 3956]
 gi|227514829|ref|ZP_03944878.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|260663589|ref|ZP_05864478.1| methylase MraW [Lactobacillus fermentum 28-3-CHN]
 gi|263458139|sp|B2GB73|RSMH_LACF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183226389|dbj|BAG26905.1| cell division protein [Lactobacillus fermentum IFO 3956]
 gi|227086819|gb|EEI22131.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|260551815|gb|EEX24930.1| methylase MraW [Lactobacillus fermentum 28-3-CHN]
          Length = 314

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + +A L   P  V +DAT G GG+S    K     ++ + D+D  A+   Q 
Sbjct: 5   NHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQA 64

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     + + +L Q  F  L+  + D+    +DG+V+DLGVSS Q D   RGFS+Q   
Sbjct: 65  NLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA  VVN+ + ++L RIL   GEEK A +IA AI + RQ  P QTT +
Sbjct: 125 PLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTME 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++++++ +   ++ +  HPA +SFQA+RI VN+E+  L   L  A   LK GG + V++
Sbjct: 185 LANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK  F    S   +     +        F+ I KK V+PT++++  N R+ S
Sbjct: 245 FQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQPDFKLINKKPVLPTEDELKVNHRAHS 304

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 305 AKLRVIER 312


>gi|253689961|ref|YP_003019151.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|262824751|sp|C6DEV1|RSMH_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|251756539|gb|ACT14615.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 314

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 176/314 (56%), Gaps = 18/314 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+ 
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS + +YV +      +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKAI---DDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   
Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V
Sbjct: 180 TKELAELI-AAASPVREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F   +S        +  +            +++ KK ++P++ +VA 
Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAE 297

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 298 NPRARSSVLRFAER 311


>gi|306821091|ref|ZP_07454707.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550784|gb|EFM38759.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 309

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H  VLL + +  LN   G   +DATFG GG+S       +N  +   D+D  A+  G  
Sbjct: 4   NHKSVLLYETVDSLNVKEGNTYVDATFGGGGHSGYLLSKANNINLYVFDQDEEAIKNGMN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
                          F  ++  + ++ +  +   + DLGVSS Q+D  +RGFS+    PL
Sbjct: 64  NFAG-NNNIHFINTNFVNIKSALYERKITKIDGLIADLGVSSYQLDNAERGFSYMNDAPL 122

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   +A DVVN  + + L+ I+   GEE  A +IA  IV RR      TT +L 
Sbjct: 123 DMRMDKNSPLTAYDVVNNYSKEQLSDIIRRYGEENWADKIAQVIVDRRGQKSIDTTFELV 182

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +     ++  HPA R+FQA+RI VNNEI+ L + L  A + L +GG L V++FH
Sbjct: 183 DVIEKAIPKKLRDKNKHPAKRTFQAIRIEVNNEIKILEKFLCDAFELLSSGGRLSVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK  F    G  +  +               ITKK +VP+ E++  N RSRSAK
Sbjct: 243 SLEDRAVKNIFKELVGGCICPKEFPICMCNRKEEATIITKKPIVPSDEELKNNPRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVIEKI 309


>gi|119512962|ref|ZP_01632023.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414]
 gi|119462375|gb|EAW43351.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414]
          Length = 302

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HVPVL ++V+  L   PG   LDAT G GG+SR   +  +   + A+D+D  A+   Q+ 
Sbjct: 15  HVPVLSQEVVEGLAVRPGGHYLDATVGGGGHSRLILEAATDVRLTAIDQDEDALGAAQKH 74

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++ ++     + FS  +        DG++ DLGVSS  +D  +RGFSF+ +  LDMRM
Sbjct: 75  LAEFGDRVEFIHSNFSAYK--YSPNTFDGILADLGVSSYHLDQPERGFSFRHAANLDMRM 132

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +     +A+DV+N+ +  +L  I    GEE+ + RIA  IV+  +     TT+   ++  
Sbjct: 133 NQQQSLTAADVINEWDEAELADIFFKYGEERLSRRIARRIVE--KRPFETTTELAEAIAY 190

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                 +  RIHPATR FQALRI VN+E++ L   L  A  AL  GG + ++SFHSLEDR
Sbjct: 191 SVPRQYRYGRIHPATRVFQALRIVVNDELKALETFLDQAPNALVPGGRIAIISFHSLEDR 250

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VK    + S                 + + +TKK +   +E++A N RSRSAKLR   R
Sbjct: 251 PVKHGLRNSS-----------------LLKVLTKKPITAKEEELANNPRSRSAKLRIAQR 293

Query: 317 TV 318
             
Sbjct: 294 VD 295


>gi|50122745|ref|YP_051912.1| S-adenosyl-methyltransferase MraW [Pectobacterium atrosepticum
           SCRI1043]
 gi|54036180|sp|Q6D0H5|RSMH_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49613271|emb|CAG76722.1| S-adenosyl-methyltransferase [Pectobacterium atrosepticum SCRI1043]
          Length = 314

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 18/314 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+ 
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS + DYV +      +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKAI---DDSRFSIIHGPFSAMADYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   
Sbjct: 120 RDGPLDMRMDPTRGSSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+SLI       +    HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V
Sbjct: 180 TKELASLI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F   +S        +  +            + + KK ++P++ +VA 
Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKPVGKK-LMPSEAEVAE 297

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 298 NPRARSSVLRFAER 311


>gi|315038044|ref|YP_004031612.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL
           1112]
 gi|312276177|gb|ADQ58817.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL
           1112]
 gi|327183324|gb|AEA31771.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus amylovorus GRL
           1118]
          Length = 315

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG++R          +I  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKS 60

Query: 74  GQETMRD-----YKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +    D      + +  L    F+ LQ    +     G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AKLNFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM     + A  +VN  + K+L  IL   G+EK + +IA  IV+RR+  
Sbjct: 121 FSYRYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIARKIVERRKDK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQALR+ VN+E++ L   L  A K L+ G
Sbjct: 181 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +        +      + + +K +  +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEK 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|168486616|ref|ZP_02711124.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490752|ref|ZP_02714895.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC0288-04]
 gi|183570380|gb|EDT90908.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574822|gb|EDT95350.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC0288-04]
 gi|301801259|emb|CBW33934.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV200]
 gi|327390750|gb|EGE89090.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA04375]
          Length = 316

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVVRKI 314


>gi|255010082|ref|ZP_05282208.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis 3_1_12]
 gi|313147877|ref|ZP_07810070.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12]
 gi|313136644|gb|EFR54004.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12]
          Length = 304

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
            I  HVPVLL++ +  +N  P    +D TFG GG+SR        G  ++  D+D  A  
Sbjct: 5   EITYHVPVLLKESVDAMNITPDGTYVDVTFGGGGHSREILSRLGNGGRLLGFDQDEDA-- 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E        F+  ++ F  L +   Y   +GVD ++ DLGVSS   D  +RGFSF+ 
Sbjct: 63  ---ERNIVNDPHFTFVRSNFRYLHNFLRYHDIEGVDSILADLGVSSHHFDDSERGFSFRF 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+   GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +T 
Sbjct: 120 DGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARSGQKIETI 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+
Sbjct: 180 GEFLEVVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP +E++A N RSRS
Sbjct: 238 TYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEEEIARNPRSRS 295

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 296 AKLRIAEK 303


>gi|153814616|ref|ZP_01967284.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756]
 gi|145848110|gb|EDK25028.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756]
          Length = 311

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +HV VLL + +  LN     V +DAT G GG++   C+        I +D+D  A+ 
Sbjct: 1   MAFEHVSVLLNETVDGLNVKLDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ + E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AAGERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRV 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN+ +  +L R++   GE+K A  IA  IV  R+  P +TT
Sbjct: 121 DAPLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVAERRKNPIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I   +    +    HP+ R+FQA+RI +N+E++ L + L    + L  GG + +
Sbjct: 181 GQLNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           H         +  + IT+K ++P++ +   N RS
Sbjct: 241 ITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str.
           Iowa]
 gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 307

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|319407511|emb|CBI81159.1| S-adenosyl-methyltransferase [Bartonella sp. 1-1C]
          Length = 349

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 163/325 (50%), Positives = 212/325 (65%), Gaps = 3/325 (0%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PVLL+ V+A L P  G  ++D TFGAGGYS +    G+ VIALDRDP A+  GQ 
Sbjct: 25  VERHIPVLLQSVLAELAPLAGAKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  +  L QA FSQL D++ ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMR
Sbjct: 85  LVDQFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A+DVVN     DL ++    GEE+ A RIA  I KRR   PF  T DL+  I+
Sbjct: 144 MGQIGFTAADVVNYLRADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIE 203

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +     + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR
Sbjct: 204 SLIGRKLGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAGGRLAVVSFHSLEDR 263

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VKKFF++RSG     R++    + PA F  + K V  PTQE++  N R+RSA+LR G+R
Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQHNPRARSARLRMGVR 323

Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341
           T E +I  D  + L  L  + +F G
Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346


>gi|312873217|ref|ZP_07733273.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2052A-d]
 gi|312874604|ref|ZP_07734628.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2053A-b]
 gi|325911728|ref|ZP_08174135.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D]
 gi|311089834|gb|EFQ48254.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2053A-b]
 gi|311091228|gb|EFQ49616.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2052A-d]
 gi|325476494|gb|EGC79653.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D]
          Length = 317

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 3   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 63  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 243 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 302

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 303 NNRSHSAKLRVAEK 316


>gi|170728860|ref|YP_001762886.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908]
 gi|262826580|sp|B1KKY5|RSMH_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169814207|gb|ACA88791.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908]
          Length = 313

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/317 (37%), Positives = 172/317 (54%), Gaps = 14/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +A LN     + +D TFG GG+SR   K       +IA+DRDP 
Sbjct: 1   MSQEFA-HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++   D +  FS+    F QL  YV +      +DGV+ D GVSS Q+D  +RGF
Sbjct: 60  AIEAAKQFADDAR--FSIVHGGFGQLATYVEELGLKGKIDGVLLDFGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+D + +A V+D+  +    GEEK +  IA  I   R+  P
Sbjct: 118 SFLRDGPLDMRMDNSQGETAADWLARAEVEDMAWVFKTYGEEKNSRHIARCIAADREKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T++L+ LI + +  SK    HPATR FQA+RI++N+E+E++ Q L  A   L   G 
Sbjct: 178 FLRTKELADLIAR-ISKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L V+SFHSLEDR+VK+F    S        +  + A     + +    K + P+ E++  
Sbjct: 237 LSVISFHSLEDRMVKRFIRRHSQGESVPHGLPITEAEINKTRLLKGVGKAIKPSDEEIER 296

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   R   
Sbjct: 297 NTRARSSVLRVAQRLEH 313


>gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
 gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
          Length = 331

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 138/319 (43%), Positives = 201/319 (63%), Gaps = 7/319 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL+ VI  L+P PG++++D TFGAGGY+R   + G+ +IA DRDP A++ G+   R
Sbjct: 5   HQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGATIIAFDRDPTAIAAGRSLER 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           +  +  +L +A FS L +      ++GVVFD GVSSMQ+D  +RGFSF+  GPLDMRM  
Sbjct: 65  ECGDALTLVEAPFSALAE-HVAPPINGVVFDFGVSSMQLDRPERGFSFRAEGPLDMRMG- 122

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G  A+D VNQA    L  +    GEE+++  +A  IV +R++ PF+TT  L+++ +  +
Sbjct: 123 AGRPAADFVNQAEEAALADVFYHYGEERRSRALARRIVAQRETTPFETTAQLAAVAEAVL 182

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRI VN+E+ E+ + L +AEK L  GG L+ VSFHSLEDR+VK
Sbjct: 183 GT--RDKIHPATRMFQALRILVNDELGEIVRALIAAEKVLAEGGRLVAVSFHSLEDRIVK 240

Query: 260 KFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           +FF    G+   A RH  P +     F  +  K +   + ++A N R+RSA+LRAG+RT 
Sbjct: 241 RFFQVTEGRAQTASRHEPPVDKILPRFAPL-GKALSADEAEIAGNPRARSARLRAGVRTA 299

Query: 319 ERSIE-DDSFVHLPRLPTL 336
               +  ++ +    LP L
Sbjct: 300 APPTDWTEAALAQLGLPAL 318


>gi|310779075|ref|YP_003967408.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926]
 gi|309748398|gb|ADO83060.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926]
          Length = 314

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 169/306 (55%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVL  + I  L    G V LD T G GG+S    K       +I++D+D  A+    
Sbjct: 9   YHIPVLYRETIENLVKNEGGVYLDCTLGGGGHSEGILKALSEKGKLISIDQDQQALDFAG 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y +++  ++  F  L   +       +DG++ D+GVSS Q+D  +RGFS++    
Sbjct: 69  ERLGKYGKKWESYKDNFENLDTVLYLAGYDKIDGILMDIGVSSTQLDDPERGFSYRFDTK 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ +  +SA +VVNQ     L++I+   GEE+ A +IA  I + R   P +TT DL
Sbjct: 129 LDMRMNKNAKVSAYEVVNQYEEGRLSKIIYDYGEERHARKIARLICEIRAEKPIETTGDL 188

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I++       +  HPA ++FQA+RI VN E++ L + +  A  ALK GG L +++FH
Sbjct: 189 VEIIKRAYKG--KSPKHPAMKTFQAIRIEVNRELDVLERSIDKAINALKPGGRLAIITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   S   +    +      + A  + IT+K + P  +++ FN+R+RS+K
Sbjct: 247 SLEDRMVKNKFKEMSVDCICPPELPVCRCDNKAKVKIITRKPITPKDDELKFNKRARSSK 306

Query: 311 LRAGMR 316
           LR   R
Sbjct: 307 LRVVER 312


>gi|149001556|ref|ZP_01826529.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006085|ref|ZP_01829814.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP18-BS74]
 gi|237649375|ref|ZP_04523627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI
           1974]
 gi|237821592|ref|ZP_04597437.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147760014|gb|EDK67003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762441|gb|EDK69402.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP18-BS74]
          Length = 316

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYRDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVVRKI 314


>gi|332982167|ref|YP_004463608.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON]
 gi|332699845|gb|AEE96786.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON]
          Length = 312

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 168/307 (54%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H PVL+E+V+  ++   G + +D T G GG++   C+       +I +D+D  A++   
Sbjct: 5   YHKPVLVEEVMQYMSCRKGGIYIDGTIGGGGHALEICRRIDGDGLLIGIDKDDEALAHAA 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ET+++Y     L +  F  ++  V       VDGV+ DLGVSS Q+D   RGFS+     
Sbjct: 65  ETLKEYSSCVRLIKGDFRYMKALVNGIEVNEVDGVLLDLGVSSHQLDDAGRGFSYNAEAV 124

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    + +A DVVN  + K L  I+   GEE+ A RIA  IVK RQ  P +TT  L
Sbjct: 125 LDMRMDKQQLLTAKDVVNTYDEKRLYEIIKDYGEERWAKRIASFIVKERQRYPIETTGQL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +  + +    HPA R+FQA+RI VN+E+  + +GL  A   LK GG L V+SF
Sbjct: 185 VEVIKRAIPAAARREGPHPARRTFQAIRIEVNDELNSIKEGLIQAMDCLKPGGRLCVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRLVK  F              +    +  V   +TKK V+ T ++V  N R+RSA
Sbjct: 245 HSLEDRLVKDTFRRWQNPCTCPPDTPLCVCGNKPVAAIVTKKPVIATPDEVESNPRARSA 304

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 305 KLRVCEK 311


>gi|325912968|ref|ZP_08175341.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B]
 gi|325477648|gb|EGC80787.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B]
          Length = 317

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 3   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 63  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 243 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 302

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 303 NNRSHSAKLRVAEK 316


>gi|298531025|ref|ZP_07018426.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509048|gb|EFI32953.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 319

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/320 (36%), Positives = 180/320 (56%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M +        H PV+LEKV+ LL PAPG   LD T G GG+S +  K      +++ +D
Sbjct: 1   MQAQ-ELADYTHQPVMLEKVLELLAPAPGGRYLDGTLGLGGHSLAILKACKGECSILGMD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
            D  A+    E + + +    + Q  F   Q+Y+ +    G+DG + DLG+SS+Q+D  +
Sbjct: 60  MDQEALELVAENLEEQQGGLHMVQDAFHNFQEYLQELQWPGLDGALLDLGMSSLQLDKKE 119

Query: 123 RGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +GFSF   GPLDMRM  +     AS +V  A+   L +I+  LGEE  A RIA AI++ R
Sbjct: 120 KGFSFIHDGPLDMRMGLAQGFPPASSLVQNASFSRLKQIIYELGEEPMAPRIARAIIQAR 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           + +P  TT +L+ ++++     +    R HPAT++FQALR+  N E+E L   L      
Sbjct: 180 EKSPINTTLELARIVEQAYPAQRRRAARNHPATKTFQALRMATNKELESLQDFLEKIAPW 239

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQ 297
           L+ G  L+V+SFHSLEDR+VK++   ++   +      + S +H    + +T+K +  ++
Sbjct: 240 LRPGARLVVISFHSLEDRMVKQYLRRQASDCICPPRSPVCSCSHRKTLEILTRKPLTASE 299

Query: 298 EDVAFNRRSRSAKLRAGMRT 317
            +++ N RSRSAKLRA  R 
Sbjct: 300 REISRNPRSRSAKLRAAQRV 319


>gi|227113994|ref|ZP_03827650.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 314

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 18/314 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+ 
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS + +YV +      +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKAI---DDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V
Sbjct: 180 TKELAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F   +S        +  +            +++ KK ++P++ +VA 
Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAE 297

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 298 NPRARSSVLRFAER 311


>gi|162447417|ref|YP_001620549.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
 gi|263433262|sp|A9NFP3|RSMH1_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|161985524|gb|ABX81173.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
          Length = 299

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 168/304 (55%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H+ VLL + I  LN  P  + +DAT G GG+S    K     ++ A D+D +A+    E
Sbjct: 2   KHISVLLNESIEGLNIKPNGIYVDATLGGGGHSLEILKKLDKGHLYAFDQDAYAIGRATE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +  Q+ FS +++ + +     VDG++FDLG+SS QID   RGFS+ K   L
Sbjct: 62  RLKDFSNK-TFIQSNFSFIKEKLNELGIYQVDGIIFDLGLSSFQIDDETRGFSYLKDYDL 120

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A ++VN    + L  I    G+E+ A +IA  IV RR   P  TT +L 
Sbjct: 121 DMRMNKDATLTAKEIVNTYERQKLADIFRAYGDEENAWKIAGMIVDRR---PLNTTLELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +       +K  + H A R FQALRI VN E+E L + L SA + L  GG L +++F S
Sbjct: 178 EITDIA---NKGMKGHSAKRVFQALRIEVNKELEVLERALNSALELLNIGGRLSIITFQS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED++VK F+ + S      +++          + IT+K V+P++ ++  N RSRSAKLR
Sbjct: 235 LEDKMVKSFYKTHSQMD-YPKNIDIRTFPKPPLKIITRKPVLPSEIELEHNSRSRSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 IAEK 297


>gi|218296762|ref|ZP_03497468.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23]
 gi|218242851|gb|EED09385.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23]
          Length = 286

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 181/308 (58%), Gaps = 25/308 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M +       +H+PVL ++ + LL   PG+V +DAT G  G++R   + G  VIALD+DP
Sbjct: 1   MEAT-----TEHIPVLYQEALDLLRVQPGQVYVDATLGGAGHTRGILERGGRVIALDQDP 55

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV   +         +        ++      + V G++ DLGVSS  ++   RGFS+Q
Sbjct: 56  EAVERAKALSHPNLLAYRANFRHLKEVLKEAGVEEVAGILADLGVSSFHLEDPRRGFSYQ 115

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G +A +VVN   ++DL RIL  LGEE+QA RIA AIV+ R+ A  +TT
Sbjct: 116 QEGPLDMRMGLEGPTAEEVVNTLPLEDLYRILRDLGEERQAYRIAKAIVEARRKARIRTT 175

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++ V F      HPA ++FQALRI+VN+E+  L + LR AE+ L  GG L+V+
Sbjct: 176 TELAEIVRRAVGF--RAAGHPARKTFQALRIYVNDELNALEEFLRQAEEVLAPGGRLVVI 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDR+VK+F                     +  + +TKK + P+QE++A N R+RS
Sbjct: 234 AFHSLEDRIVKRFLRE------------------SRLKVLTKKPLTPSQEEMAKNPRARS 275

Query: 309 AKLRAGMR 316
           AKLRA  +
Sbjct: 276 AKLRAAEK 283


>gi|157963630|ref|YP_001503664.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345]
 gi|262826529|sp|A8H992|RSMH_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157848630|gb|ABV89129.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345]
          Length = 315

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  + +D TFG GG+SR   +       +IA+DRDP A++  +
Sbjct: 6   EHLSVLLAETVAGLNIRPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F +    F QL DYV D      +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 66  QFKDDSR--FQIVHGGFGQLADYVEDLGLKGQIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+  + +A ++D+  +    GEEK +  IA  I   R+ APF  T+D
Sbjct: 124 PLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKD 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALAVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F    S        +  + A     + +    K + P+ E+V  N R+RS
Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEAEINKSRKLKAMGKAIKPSVEEVERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|188532894|ref|YP_001906691.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99]
 gi|263447020|sp|B2VD83|RSMH_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188027936|emb|CAO95793.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99]
          Length = 313

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 121/317 (38%), Positives = 179/317 (56%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    H  VLL++ +  LN     + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   HDTFKHTTVLLDEAVNGLNIKSDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y  ++     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFTIIHGPFSALAEYAEERGLKGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALTAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           ++SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQIPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|253998164|ref|YP_003050227.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4]
 gi|253984843|gb|ACT49700.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4]
          Length = 321

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 13/311 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV VLLE+ +A L   P  + +D TFG GG+SR   +       ++ LDRD  AVS 
Sbjct: 13  VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        +FS+    FS+L +       + VDGV+ DLG+SS QID G+RGFSF+  
Sbjct: 73  ARSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTT 188
           GPLDMRM    G +A++ + +A+ + LT ++   GEE+ A ++A AIV  R       TT
Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGDALTTT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++   +   +  +  PATR+FQALRIF+N E+EEL+  L     AL  GG L V+
Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  S   +     +           + +   K + P+  ++  N RSR
Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308

Query: 308 SAKLRAGMRTV 318
           SA LR   RT 
Sbjct: 309 SAVLRVAERTE 319


>gi|256545404|ref|ZP_05472767.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC
           51170]
 gi|256398965|gb|EEU12579.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC
           51170]
          Length = 306

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 161/306 (52%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K       +I LD+D  A+   +E
Sbjct: 5   HKSVLLNETIENLNIKEDGIYADLTLGKGGHSKEILKKLSPNGLLIGLDQDKDAIKAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+      F   F  +++ + + G + +   + D+GVSS QID GDRGFS+ K GPL
Sbjct: 65  NLKDFSNVL-YFNENFENIENVLDEAGFNRIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A  +VN  ++ +L +I    GEE+ +  IA AIV  R+     TT  L 
Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWKIFSEYGEERYSKTIAKAIVDYRKMHEINTTLQLR 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ K+V  S+    HP  R FQALRI VN E+E L   L      L   G L V++FHS
Sbjct: 184 NIVMKSVNTSEA---HPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKNGRLCVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S K +           H    + I+KK ++P+++++  N RS SAKL
Sbjct: 241 LEDRIVKNKFKEMSKKCICPPDFPVCVCNHEKKVKLISKKPILPSKDELKNNNRSHSAKL 300

Query: 312 RAGMRT 317
           R   R 
Sbjct: 301 RVCERI 306


>gi|241895696|ref|ZP_04782992.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC
           33313]
 gi|241871063|gb|EER74814.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC
           33313]
          Length = 314

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   HV VLL + I  LN  P  V +DAT G GG+S+          + + D+D  A++ 
Sbjct: 2   TEFKHVTVLLREAIDGLNVQPDGVYVDATLGGGGHSKLLASRLSTGKLWSFDQDETAITY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128
            QE + D     + +  Q  F  L D +  + V     +V+DLGVSS Q D G RGFS+ 
Sbjct: 62  NQEHLADEIAAGKVAFIQDNFRHLHDALMAEDVSTIDGIVYDLGVSSPQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM     ++A  VVN+ +  +L RI    GEEK A +IA  I   R+  P +T
Sbjct: 122 YDAPLDMRMDQSQSLTARTVVNEWSFHELLRIFSRYGEEKFAKQIARKIEHEREIKPIET 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L ++I+ ++   ++    HPA R+FQA+RI VN+E+  + + L  A   L   G + 
Sbjct: 182 TFELVNIIKDSIPAAARRKGGHPAKRTFQAIRIAVNDELGAVEESLAQALDMLNVHGRIA 241

Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDRLVK  F  + S   +     I        F+ + +K ++P+ E++A NRR
Sbjct: 242 VITFHSLEDRLVKTMFKEKVSIPDLPAGLPIIPEEMQPDFKLVVRKPILPSDEELATNRR 301

Query: 306 SRSAKLRAGMRTV 318
           + SAKLR   R  
Sbjct: 302 AHSAKLRIIERIK 314


>gi|259416349|ref|ZP_05740269.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B]
 gi|259347788|gb|EEW59565.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B]
          Length = 329

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 150/330 (45%), Positives = 198/330 (60%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+       G HVPVLL+ ++  + P      LD TFGAGGY++     G+  VI +DRD
Sbjct: 1   MTDRTAAPSGPHVPVLLKPLLEAVAPV-TGRWLDGTFGAGGYTKGLLAAGAEQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q+   +Y  +  L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQDWAEEYGARLVLQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+V +     L  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 118 MKDGPLDMRMSQDGSSAADLVAELTEVQLADILYSFGEERASRRIAKAIVRERALEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+ K        P     P+ F+ +T+K V P ++++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRFAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           RSA LR G RT    +E     + +P+L  
Sbjct: 298 RSALLRVGRRTDAAPVEITAKELSMPQLKE 327


>gi|294674965|ref|YP_003575581.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23]
 gi|294473982|gb|ADE83371.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 163/312 (52%), Gaps = 16/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      HVPVLL + I  L    G + +D TFG GG+S+   +     +++ + D+DP 
Sbjct: 2   ITTAETYHVPVLLHESIDGLAIKSGGIYVDVTFGGGGHSKEILRRLDEKAHLYSFDQDPD 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFS 126
           A            ++F+  ++ F  L++++   GVD +   + DLGVSS   D   RGFS
Sbjct: 62  AEKN-----IVNDDRFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM+   G +A++++N  + + L  I  I GE K A +IA  I K R     
Sbjct: 117 FRFDAPLDMRMNKRAGTTAAEILNTYDEEQLADIFYIYGELKNARKIASIIAKTRNEKKI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT DL S  +K   F +        + FQALRI VN+E++ L + L  A+  L  GG L
Sbjct: 177 ETTGDLMSATEK--LFQREREKKEMAKMFQALRIEVNHEMDALKEMLNGAKDLLGEGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+++HSLEDR+VK    + + +    +        P  F+ I  KV+VP+ E+   N R
Sbjct: 235 SVITYHSLEDRIVKNMMKAGNVEGKIKQDFFGRIEAP--FRLINNKVIVPSDEEQQQNPR 292

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 293 SRSAKLRIAEKI 304


>gi|308185651|ref|YP_003929782.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea
           vagans C9-1]
 gi|308056161|gb|ADO08333.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea
           vagans C9-1]
          Length = 313

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/318 (36%), Positives = 172/318 (54%), Gaps = 19/318 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGRLIAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFSIIHGPFSALAEYVAERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ +  A   D+  +L   GEE+ + RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFSKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L 
Sbjct: 179 RTRELAEVI-SVAMPVKDKFKHPATRSFQAIRIWINSELEEIDIALKGAVEVLAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDRLVK+F   +S        +  +            + + K  + P   +V+
Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEVS 295

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RS+ LR   +T  
Sbjct: 296 ENPRARSSVLRIAEKTDA 313


>gi|313200234|ref|YP_004038892.1| s-adenosyl-methyltransferase mraw [Methylovorus sp. MP688]
 gi|312439550|gb|ADQ83656.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. MP688]
          Length = 321

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 170/310 (54%), Gaps = 13/310 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV VLLE+ +A L   P  + +D TFG GG+SR   +       ++ LDRD  AVS 
Sbjct: 13  VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            Q        +FS+    FS+L +       + VDGV+ DLG+SS QID G+RGFSF+  
Sbjct: 73  AQSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTT 188
           GPLDMRM    G +A++ + +A+ + LT ++   GEE+ A ++A AIV  R       TT
Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGNALTTT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++   +   +  +  PATR+FQALRIF+N E+EEL+  L     AL  GG L V+
Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  S   +     +           + +   K + P+  ++  N RSR
Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308

Query: 308 SAKLRAGMRT 317
           SA LR   RT
Sbjct: 309 SAVLRVAERT 318


>gi|114330281|ref|YP_746503.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91]
 gi|123321952|sp|Q0AJD3|RSMH_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114307295|gb|ABI58538.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91]
          Length = 317

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/318 (35%), Positives = 176/318 (55%), Gaps = 18/318 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  LN   G + +D T+G GG+SR           +IA D+DP A+S  +
Sbjct: 1   MHISVLLEEAVDALNIQKGGIYVDGTYGRGGHSRLILSRLDKSGQLIAFDKDPAAISEAR 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    E+F    ++++ +   +       VDG++ DLGVSS+Q+D   RGFSF+  GP
Sbjct: 61  SIL---DERFQAVHSSYAGMYTALQSLGINRVDGILLDLGVSSIQLDEASRGFSFRHDGP 117

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ +  A+  +L  I+   GEE+ A +IA AIV  +   P  TT  L
Sbjct: 118 LDMRMDSSRGKTAAEWLTMASETELKEIIRTYGEERYAGQIASAIVMEQARQPISTTLRL 177

Query: 192 SSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++   V     +++R HPATR+FQA+RI +N E+EEL+  L    + L  GG L+V+S
Sbjct: 178 AEIVAAVVRKRGHRDDRQHPATRTFQAIRIHLNQELEELSMTLPQCVELLNTGGRLVVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-----HPAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK+F   ++G     R +          +    + I KK + P  ++V+ N 
Sbjct: 238 FHSLEDRIVKRFMRMQTGTDTLPRRLPIREEESRLHNQQKLRIIGKK-IRPGSDEVSANP 296

Query: 305 RSRSAKLRAGMRTVERSI 322
           R+RSA +R   +   R+ 
Sbjct: 297 RARSAVMRVAEKLETRNA 314


>gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish
           7]
 gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 307

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 182/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  + Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|149201994|ref|ZP_01878968.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035]
 gi|149145042|gb|EDM33071.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035]
          Length = 330

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 148/322 (45%), Positives = 197/322 (61%), Gaps = 6/322 (1%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73
            +   H+PVLL  +IA + P    V LD T GAGGY+R+    G+  VI +DRDP A   
Sbjct: 8   KSNAPHIPVLLRPLIAAVAPVQ-GVWLDGTLGAGGYARALLDAGADQVIGVDRDPLAHDM 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q    +Y ++  L    F+Q+ DY  D  +DGVV DLGVSSMQ+D  +RGFSF K GPL
Sbjct: 67  AQGWGAEYGDRLRLVLGNFAQMDDYATD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPL 124

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D+VN A   DL  IL + GEE+ + RIA AIVK R  AP +TT  L+ 
Sbjct: 125 DMRMSQEGPSAADLVNTAEESDLADILYLYGEERASRRIARAIVKARTEAPIETTLHLAG 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI++ +  SK  + H ATRSFQA+RI VN+E   L  GL +AE+ALK GG L VV+FHS+
Sbjct: 185 LIERCLPRSKPGQAHAATRSFQAIRIAVNDEYGALIAGLEAAERALKEGGQLAVVTFHSI 244

Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+F  +RS G     RH          F   ++K + P  E++A N R+RSA+LR
Sbjct: 245 EDRIVKRFLTARSGGGGTGSRHAPEITREEPQFTLKSRKAIGPDDEELAVNPRARSARLR 304

Query: 313 AGMRTVERSIEDD-SFVHLPRL 333
              RT   + + + + + +P L
Sbjct: 305 VATRTDAPAGQSERAALGVPML 326


>gi|149914518|ref|ZP_01903048.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b]
 gi|149811311|gb|EDM71146.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b]
          Length = 331

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 142/326 (43%), Positives = 194/326 (59%), Gaps = 6/326 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPF 69
           +        H+PVLL  ++  + P    V +D T GAGGY+R   + G+  VI +DRDP 
Sbjct: 5   AQAPDPSAPHIPVLLRPLLEAVAPVE-GVWIDGTLGAGGYTRGLLEAGAQTVIGVDRDPL 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+         Y ++  L Q  FS +  +  D  VDGVV DLGVSSMQ+D  +RGFSF +
Sbjct: 64  ALEMAALWGAAYGDRLVLVQDIFSNMDAHASD--VDGVVLDLGVSSMQLDRAERGFSFMR 121

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G +A+D+VN A+  +L  IL + GEE+ + RIA AI++ R S    TT 
Sbjct: 122 DGPLDMRMSQQGPTAADLVNTADEGELADILYLYGEERASRRIARAILRERASGDIDTTL 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I+  +   K  ++HPATRSFQALRI VN+E  EL  GL +AE+ALK GG L VV+
Sbjct: 182 HLARIIESCLPRPKPGQVHPATRSFQALRIAVNDEFGELVAGLEAAERALKPGGKLAVVT 241

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHS+EDR+VK+F  ++S G     RH       PA F    +K + P + ++A N RSRS
Sbjct: 242 FHSIEDRMVKRFLQAKSAGGGGGSRHAPAMRPEPAEFDVTQRKAIGPDKSELAENPRSRS 301

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRL 333
           AKLR  +RT   +   D   + +P L
Sbjct: 302 AKLRVAIRTDAAATPADRKAIGMPLL 327


>gi|300361452|ref|ZP_07057629.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03]
 gi|300354071|gb|EFJ69942.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03]
          Length = 315

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H  VLL + I  LNP    + +DATFG GG++R      +   VI  D+D +A+S 
Sbjct: 1   MKFKHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISM 60

Query: 74  GQETMRDY-----KEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E+  +      + +  L    F  L+    +     G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKESFAEELKPGAEPKLILVHDNFCHLKKNLVELGISDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  
Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT DL  +I+  +    + +  HPA +SFQA+R+ VNNE+  L + L  A K L+ G
Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +         + I++K ++ + +++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|227524041|ref|ZP_03954090.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227088780|gb|EEI24092.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290]
          Length = 315

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 10/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+
Sbjct: 5   KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R Y   ++ +L    F  ++  + D+    +DG+V+DLGVSS Q D   RGFS++   
Sbjct: 65  HLRQYVENDKLTLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM       A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT D
Sbjct: 125 HLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L +LI++ +   ++ +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++
Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK  F  ++       ++          ++ IT+K ++P ++++A N R+ S
Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNHRAHS 304

Query: 309 AKLRAGMRTV 318
           AKLR   RT 
Sbjct: 305 AKLRIIERTK 314


>gi|315653716|ref|ZP_07906636.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners ATCC 55195]
 gi|315489078|gb|EFU78720.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners ATCC 55195]
          Length = 315

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 167/314 (53%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K  S  ++I  D+D +A+  
Sbjct: 1   MEFKHYSVLLHETIDNLNLKSDGVYVDATFGGGGHASYLLKQLSNVHLIGFDQDEYAIEL 60

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F SLED++VKK F   S   +        ++     + I++K +V T +++  
Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|310642996|ref|YP_003947754.1| ribosomal RNA small subunit methyltransferase h [Paenibacillus
           polymyxa SC2]
 gi|309247946|gb|ADO57513.1| Ribosomal RNA small subunit methyltransferase H [Paenibacillus
           polymyxa SC2]
          Length = 316

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 170/315 (53%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H+ VL E+    LN     + +D T G  G+S            +IA D+D +A++ 
Sbjct: 1   MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---------KGVDGVVFDLGVSSMQIDCGDRG 124
            +E +  Y+ + SL ++ F  LQD + +           V G++FDLGVSS Q D G+RG
Sbjct: 61  AREKLSAYEGKISLVKSNFRHLQDKLAELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S   +A ++VN+    ++ RIL   GEEK + RIA  +V+RR + 
Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWPEAEIARILFQYGEEKFSRRIAKIMVERRMNK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  + +    HPA RSFQALRI VN+E+  L   L  A + L  G
Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDTLHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K  F     K +    +   +       + + +K +V +++++ 
Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILDDKMVGDLKLVNRKPIVASEQELE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 301 LNPRSRSAKLRVAEK 315


>gi|304396555|ref|ZP_07378436.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB]
 gi|304356064|gb|EFM20430.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB]
          Length = 313

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 172/318 (54%), Gaps = 19/318 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L 
Sbjct: 179 RTRELAEVISIA-MPVKDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDRLVK+F   +S        +  +            + + K  + P   +V+
Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEVS 295

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RS+ LR   +T  
Sbjct: 296 ENPRARSSVLRIAEKTDA 313


>gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
 gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 173/310 (55%), Gaps = 10/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           +  H PVL ++V+  +      V +D T G GG++    +     S V+A+D+D  A+  
Sbjct: 1   MEYHKPVLFDEVMDNIITDKDAVYVDCTLGGGGHTEGILENSSKNSKVVAIDQDVQAIEF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y  +  +FQ  F  +   V     + VD ++ D+GVSS Q+D   RGFS++  
Sbjct: 61  AKKRLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRILMDIGVSSNQLDNAKRGFSYRFE 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ISA +V+N  + K+L  I+   GEE ++ +IA  IV+ R+    +TT 
Sbjct: 121 ARLDMRMDSNLKISAYEVINNFSEKELADIIYKYGEEPKSRKIAKKIVEYRKIKAIETTT 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++ K++   K+ + HPA R+FQA+RIFVN E+E L++ L  A K L   G L+V++
Sbjct: 181 ELADIVIKSIG--KSMKRHPAKRTFQAIRIFVNKELEILSETLDKAVKLLGKNGKLLVIT 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F              I      ++ + ITKK +V  + ++A N R+ S
Sbjct: 239 FHSLEDRIVKEKFREYENPCTCPPDIPICVCGKQSLGKVITKKPIVAKELELAENNRAHS 298

Query: 309 AKLRAGMRTV 318
           AKLR   R+ 
Sbjct: 299 AKLRIFERSE 308


>gi|298377152|ref|ZP_06987106.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19]
 gi|298266136|gb|EFI07795.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19]
          Length = 305

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 165/307 (53%), Gaps = 17/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPV+L + +  L+  P  + +D TFG GG+S    K   +   +   D+D  A     
Sbjct: 8   YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSCEILKRLGSEGELYGFDQDADA----- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F+  ++ F  L +++        VDG++ DLGVSS   D  DRGFSF+  G
Sbjct: 63  EHNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D
Sbjct: 123 ALDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++
Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAK
Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 299 LRIAEKV 305


>gi|160946332|ref|ZP_02093541.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270]
 gi|158447448|gb|EDP24443.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270]
          Length = 310

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 164/310 (52%), Gaps = 8/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
              +H+P++L +VI  L+  P  + +D T G  G+S    K      +I +D+D  A+S 
Sbjct: 1   MEFNHIPIMLNEVIDNLDIKPNGIYVDLTVGGAGHSTEILKRIKNGKLICVDQDEEALSV 60

Query: 74  GQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +    +    +++ F     + DY     VDGV+ D+GVSS QID G RGFS+   
Sbjct: 61  ARDRLLKISDNVLFYKSNFENFKEILDYFGIDKVDGVLLDIGVSSYQIDNGQRGFSYMID 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      SA DVVN  N +DL  I    GEEK   RI   IV  R+    +TT 
Sbjct: 121 APLDMRMDRDLKKSAFDVVNYYNSEDLEYIFYNYGEEKWTKRIVEFIVNYRKEKLIETTF 180

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN E+E + + +    + L   G L ++
Sbjct: 181 ELVDIIERAIPKAVRAKGGHPAKRVFQAIRIEVNRELEVIKKVIPDIVERLNKNGRLCII 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   +   +  +   +    +    + +TKK +VP++E++  N RS+
Sbjct: 241 TFHSLEDRIVKDSFKELARGCICPKELYVCVCNNKPKIKILTKKPLVPSEEEMNRNPRSK 300

Query: 308 SAKLRAGMRT 317
           S+KLR   + 
Sbjct: 301 SSKLRICSKI 310


>gi|49084936|gb|AAT51240.1| PA4420 [synthetic construct]
          Length = 314

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D
Sbjct: 1   MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121
           +DP A+  G+  +     +F + Q +F++L D V     +  VDGV+ DLGVSS Q+D  
Sbjct: 56  KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RR
Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF+ T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L 
Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +   +        +  K    ++E
Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA +R   +
Sbjct: 294 ELKANPRSRSAVMRVAEK 311


>gi|20139121|sp|Q9AJG9|RSMH_VIBPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13537266|dbj|BAB40618.1| hypothetical protein [Vibrio proteolyticus]
          Length = 316

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/316 (36%), Positives = 168/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ESFQHISVLLHESIEGLAIKPDGIYIDGTFGRGGHSRTILSQLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +F++    FS +  Y         VDGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 63  EAKTI---DDPRFTIVHGPFSGIAHYAKQHGLAGKVDGVLFDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R++   + 
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G 
Sbjct: 180 LKRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAEILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A              K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESQGPQVPHGIPMTEAQIQALGSANMKAIGKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 ELNPRSRSSVLRIAEK 315


>gi|254230425|ref|ZP_04923805.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|262395267|ref|YP_003287121.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|151937058|gb|EDN55936.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|262338861|gb|ACY52656.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
          Length = 316

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---NDPRFTIIHGPFSGIAEYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R+    + 
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EMNPRSRSSVLRIAEK 315


>gi|116629844|ref|YP_815016.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus gasseri ATCC 33323]
 gi|238853964|ref|ZP_04644321.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4]
 gi|311110516|ref|ZP_07711913.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22]
 gi|122273218|sp|Q042P4|RSMH_LACGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116095426|gb|ABJ60578.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus gasseri ATCC 33323]
 gi|238833409|gb|EEQ25689.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4]
 gi|311065670|gb|EFQ46010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22]
          Length = 315

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H  VLL + I  LNP    + +DATFG GG++R      +   VI  D+D +A+S 
Sbjct: 1   MKFKHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISM 60

Query: 74  GQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E+  +      + +  L    F  L++         G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKESFAEELKPGAEPKLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  
Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT DL  +I+  +    + +  HPA +SFQA+R+ VNNE+  L + L  A K LK G
Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +         + I++K ++ + +++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|282851645|ref|ZP_06261010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1]
 gi|282557613|gb|EFB63210.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1]
          Length = 315

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H  VLL + I  LNP    + +DATFG GG++R      +   VI  D+D +A+S 
Sbjct: 1   MKFKHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISM 60

Query: 74  GQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +E+  +      + +  L    F  L++         G+DG+ +DLGVSS Q D  +RG
Sbjct: 61  AKESFAEELKPGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  
Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT DL  +I+  +    + +  HPA +SFQA+R+ VNNE+  L + L  A K LK G
Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +         + I++K ++ + +++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEE 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|90423689|ref|YP_532059.1| methyltransferase [Rhodopseudomonas palustris BisB18]
 gi|123275305|sp|Q216E6|RSMH_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|90105703|gb|ABD87740.1| methyltransferase [Rhodopseudomonas palustris BisB18]
          Length = 330

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 144/328 (43%), Positives = 197/328 (60%), Gaps = 8/328 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PVL ++ + LL P  G V +DATFGAGGYS        + VI +DRD  A++ G +
Sbjct: 5   SRHIPVLGQEAVGLLAPRDGGVYVDATFGAGGYSGLILAAADTRVIGIDRDRTAIAGGFD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + +L +  FS L +    +G    DGVV D+GVSSMQ+D  +RGFSF+ +GPL
Sbjct: 65  LVERSGGRLTLVEDRFSNLAEVCAAQGAGLVDGVVMDVGVSSMQLDQSERGFSFRLAGPL 124

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  SG SA+DV+  A+  +L  I+ I GEE+ +  +A AIV  R   P  TT+ L+ 
Sbjct: 125 DMRMGQSGPSAADVIAVASEAELANIIYIFGEERHSRAVARAIVAARAIEPITTTRALAD 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K V+  K   IHPATR+FQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSL
Sbjct: 185 IVGKVVHA-KPGEIHPATRTFQGLRIFVNGELDELHLALSAAERVLKPGGRLVVVSFHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK FF +R       RH+   +     F  +TK+ +    +++A N R+RSAKLRA
Sbjct: 244 EDRIVKNFFNARGKTGGGSRHLPELDQEAPSFAILTKRPITAGPDELAGNPRARSAKLRA 303

Query: 314 GMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           G RT   +   +    LP  PTL    G
Sbjct: 304 GERTAALAHPGED---LPAWPTLDAVMG 328


>gi|332991932|gb|AEF01987.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas sp. SN2]
          Length = 313

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 181/313 (57%), Gaps = 15/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV 71
            +   HV VLL++ I  L   P  + +DATFG GG+S        +   +IA DRDP A+
Sbjct: 4   SSEFKHVSVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGSDGTLIAFDRDPQAI 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              +    D +  F +  + F  + + +        +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 64  EAAKRFADDSR--FRIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSF 121

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA+D + +A  +D+T+++   GEEK   RIAHAIV  R++ P  
Sbjct: 122 LRDGPLDMRMDTSRGESAADWLARAEEQDITQVIKEFGEEKFGKRIAHAIVNTRETTPIT 181

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T  L++LI + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L 
Sbjct: 182 RTAQLAALIDEAV-PVKDKFKHPATRAFQGIRIYINAELEQLRTGLKAATQVLAKEGRLA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDRLVK+F   +S       ++  + A      V +++++  + P++ ++A N
Sbjct: 241 VISFHSLEDRLVKRFIKDQSKGKSVPHNLPITQAEIDADKVLKALSR-AIKPSELEIANN 299

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   +
Sbjct: 300 VRSRSSVLRVAEK 312


>gi|227509375|ref|ZP_03939424.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191087|gb|EEI71154.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 315

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 10/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+
Sbjct: 5   KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R Y   ++ +L    F  ++  + D+    +DG+V+DLGVSS Q D   RGFS++   
Sbjct: 65  HLRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM       A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT D
Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L +LI++ +   ++ +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++
Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK  F  ++       ++          ++ IT+K ++P ++++A N R+ S
Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNHRAHS 304

Query: 309 AKLRAGMRTV 318
           AKLR   RT 
Sbjct: 305 AKLRIIERTK 314


>gi|292490616|ref|YP_003526055.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4]
 gi|291579211|gb|ADE13668.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4]
          Length = 317

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 181/316 (57%), Gaps = 10/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+         H PVLL +VI  L      + +DATFG GG++++          ++ +D
Sbjct: 1   MAPMDEKETLTHQPVLLREVIQALAIRRDGLYVDATFGRGGHAQAILDALSSEGRLLGVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           +DP A++ G+  +     +FS+ QA+  +L   V ++     V+GV+FDLGVSS Q++  
Sbjct: 61  KDPEAIAAGR-ILAQQDRRFSIVQASIGELARVVAEQGWLKRVNGVLFDLGVSSPQLENA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF + GPLDMRM+ + G SA++ +  A  K++  +L   GEE+   RIA AIV+ R
Sbjct: 120 KRGFSFLQDGPLDMRMNPAVGQSAAEWLASATEKEIAAVLKTYGEERFCRRIARAIVQAR 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +  P   T+ L+ ++ K     +  R HPATRSFQA+RIF+NNE+EEL   L  A   L 
Sbjct: 180 EINPLTRTKQLAEVVAKANPSWEPGR-HPATRSFQAIRIFINNELEELRAALEQAVTVLA 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G L+V+SFHSLEDR+VK+FF  +S        +     H      +  K++ PT E+V
Sbjct: 239 VKGRLVVISFHSLEDRMVKRFFRQKSRGEDLPPDLPVMQDHFQASLQVLGKLIWPTPEEV 298

Query: 301 AFNRRSRSAKLRAGMR 316
           + N R+RSA+LR   +
Sbjct: 299 SRNPRARSARLRVAEK 314


>gi|91228506|ref|ZP_01262428.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01]
 gi|269967393|ref|ZP_06181453.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B]
 gi|91187940|gb|EAS74250.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01]
 gi|269827981|gb|EEZ82255.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B]
          Length = 316

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  V +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---NDPRFTIIHGPFSGIAEYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + G+  S  + +A++ D+T ++   GE+K A RIA AIV  R+    + 
Sbjct: 120 KDGPLDMRMDPTSGVPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EMNPRSRSSVLRIAEK 315


>gi|310765090|gb|ADP10040.1| S-adenosyl-methyltransferase MraW [Erwinia sp. Ejp617]
          Length = 313

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 180/317 (56%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN  P  + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y   +     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA++ + +A   D++ +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040]
 gi|123378785|sp|Q1GF19|RSMH_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|99038135|gb|ABF64747.1| methyltransferase [Ruegeria sp. TM1040]
          Length = 329

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 150/330 (45%), Positives = 202/330 (61%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+       G H+PVLL+ ++A + P      LD TFGAGGY++     G+  VI +DRD
Sbjct: 1   MTDRTAAPSGPHIPVLLKPLLAAVAPV-TGRWLDGTFGAGGYTKGLLAAGADQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    +Y ++  L Q  FS++ +Y  +  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQPWAAEYGDRLVLQQGVFSRMDEYAQE--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+V + +   L  +L   GEE+ + RIA AIVK R   P  T
Sbjct: 118 MKEGPLDMRMSQDGPSAADLVAELSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLRLAEIIEGCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+ K   A R+       P+ F+ +T+K V P ++++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRYAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           RSA LR G RT    +E     + +P+L  
Sbjct: 298 RSALLRVGRRTDAAPVEITAKELSMPQLKE 327


>gi|84516398|ref|ZP_01003757.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53]
 gi|84509434|gb|EAQ05892.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53]
          Length = 326

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 147/315 (46%), Positives = 200/315 (63%), Gaps = 10/315 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           MS+A   T   H+PVL+  +IA + P    V LD TFG GGY+R+    G++ VIA+DRD
Sbjct: 1   MSAAADQT--PHIPVLIRPLIAAVGPV-TGVWLDGTFGNGGYTRALLAAGAHKVIAVDRD 57

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A       + DY ++  + +  FSQL  Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 58  PLAFQMAAGWVADYGDRIVMQEGVFSQLDTYAQD--LDGVVLDLGVSSMQLDLAERGFSF 115

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG+SA+D+ N A   +L  I+ + GEE+ + RIA AIV  R   P  T
Sbjct: 116 MRDGPLDMRMSQSGLSAADLCNDAEEAELADIIYLYGEERASRRIAKAIVAAR---PLTT 172

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++  +  +K N+ HPATR+FQALRI VNNE  ELA GL +AE+ALK GG L V
Sbjct: 173 TGQLAKIVESCLPRAKPNQSHPATRTFQALRIAVNNEYGELAMGLMAAERALKPGGQLAV 232

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+ K+F  +RSG    A R+   +      F+   +K + P ++++A N RS
Sbjct: 233 VTFHSVEDRMAKRFLQARSGNNANANRYAPETTQVTPAFRIDKRKAIGPDEQELAENPRS 292

Query: 307 RSAKLRAGMRTVERS 321
           RSAKLR  +RT   +
Sbjct: 293 RSAKLRVAIRTDAPA 307


>gi|256850925|ref|ZP_05556314.1| MraW methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661139|ref|ZP_05862053.1| MraW methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934162|ref|ZP_06339440.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|297205805|ref|ZP_06923200.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16]
 gi|256615987|gb|EEU21175.1| MraW methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548076|gb|EEX24052.1| MraW methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301776|gb|EFA94042.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|297148931|gb|EFH29229.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16]
          Length = 317

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 167/314 (53%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           T   H  VLL + I  LN     + +DATFG GG++R      +   ++  D+D +A++ 
Sbjct: 3   TNFKHTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAINA 62

Query: 74  GQETMRD-----YKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++   +     ++ Q  +    FS L D         G+DG+ +DLGVSS Q D  DRG
Sbjct: 63  AKDNFSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPDRG 122

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM+      A  VVN  +   L  +L   G+EK + +IA  IV+RRQ  
Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQQK 182

Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  LI++ +  +K     HPA +SFQA+R+ VN+E++ L   L+ A + L+ G
Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLRPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     I  +      + + +K ++ T  ++A 
Sbjct: 243 GRISVITFQSHEDKIVKKIFKENSEVDVPRGIPIIPDNLKPKLKLVNRKPILATASELAN 302

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 303 NNRSHSAKLRVAEK 316


>gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
 gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
          Length = 307

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  + Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF  +GPLD
Sbjct: 61  EEIQQSYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHNGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|15599616|ref|NP_253110.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAO1]
 gi|107099995|ref|ZP_01363913.1| hypothetical protein PaerPA_01001016 [Pseudomonas aeruginosa PACS2]
 gi|254244769|ref|ZP_04938091.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296391129|ref|ZP_06880604.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAb1]
 gi|20139184|sp|Q9HVZ5|RSMH_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9950652|gb|AAG07808.1|AE004856_19 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126198147|gb|EAZ62210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 313

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D
Sbjct: 1   MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121
           +DP A+  G+  +     +F + Q +F++L D V     +  VDGV+ DLGVSS Q+D  
Sbjct: 56  KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RR
Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF+ T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L 
Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +   +        +  K    ++E
Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA +R   +
Sbjct: 294 ELKANPRSRSAVMRVAEK 311


>gi|313673691|ref|YP_004051802.1| s-adenosyl-methyltransferase mraw [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940447|gb|ADR19639.1| S-adenosyl-methyltransferase MraW [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 312

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 170/313 (54%), Gaps = 9/313 (2%)

Query: 13  IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           + H +   H+PVLLE+ +  LN   G V +D T G GG+S +  +      +I LDRDP 
Sbjct: 1   MAHKVEMAHIPVLLEEALHYLNVISGGVYVDCTGGGGGHSAAILEKINEGRLIILDRDPD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSF 127
           A        +       +    FS ++  +       +G++ D GVSS QI    RGFSF
Sbjct: 61  ACERLFIRFKGVPN-VDIINDNFSNIEKILDSMGLKANGILADFGVSSFQISNTGRGFSF 119

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM     +SA DVVN  + + L  I+   GE+  A RIA+ IVK R      
Sbjct: 120 RYDEPLDMRMDKKTDLSAYDVVNNLSQETLENIIKKYGEDPFAKRIAYVIVKYRNLKKIT 179

Query: 187 TTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT++L+ +I   V    + + IHPATR+FQA+RIFVN E+E +   L+S E  L + G  
Sbjct: 180 TTKELAEIIANAVPVKFHKKGIHPATRTFQAIRIFVNKELEAIESLLKSLENILVSKGRG 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + +SFHSLEDR+VK F    + + +      I +      F+ +TKK V+P++++V  N 
Sbjct: 240 VFISFHSLEDRMVKDFLNYYAKQCICPPGQPICTCGKKQTFKVLTKKPVLPSKDEVIKNP 299

Query: 305 RSRSAKLRAGMRT 317
            SRSAKLRAG R 
Sbjct: 300 YSRSAKLRAGERV 312


>gi|319639028|ref|ZP_07993786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria
           mucosa C102]
 gi|317399932|gb|EFV80595.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria
           mucosa C102]
          Length = 320

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 168/315 (53%), Gaps = 12/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLL + +  L      + +D TFG GG+SR           ++  D+DP A++
Sbjct: 5   ENYQHVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +    ++ S+    F   Q  + +     +DG +FDLG+SS QID G RGFSF+ 
Sbjct: 65  VANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT
Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ L+ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V+
Sbjct: 184 RKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +   N R+
Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSAETEANPRA 301

Query: 307 RSAKLRAGMRTVERS 321
           RSA LR   R+    
Sbjct: 302 RSAVLRVAERSSGEF 316


>gi|259907409|ref|YP_002647765.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96]
 gi|224963031|emb|CAX54514.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96]
 gi|283477242|emb|CAY73151.1| S-adenosyl methionine adenyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 313

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 180/317 (56%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN  P  + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y   +     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA++ + +A   D++ +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|256425920|ref|YP_003126573.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588]
 gi|256040828|gb|ACU64372.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588]
          Length = 302

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 160/312 (51%), Gaps = 17/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL++VI  L   P  V +DATFG GG+SR+  +       +I  D+D  
Sbjct: 1   MEEASAYHLPVLLQEVITNLQIQPDGVYVDATFGGGGHSRAILEKLNENGRLIVFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +      R    + +  Q  F  LQ +        VDG++ DLGVSS Q D  +RGFS
Sbjct: 61  AYNN-----RIDDPRVTFVQQNFRHLQRFLRLYKSVPVDGILADLGVSSWQFDTAERGFS 115

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM      +A+ ++  +  K+L  +    GE   A  +A  IV+ R++ P 
Sbjct: 116 TRFDGDLDMRMDKRNALTAASLLQSSTEKELHLLFQNYGEVTNARTLAKTIVQERKARPM 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T  +  S+IQ  V   K N      + FQALRI VN+E   L   L  + + LK GG L
Sbjct: 176 RTINEFKSVIQPIV---KGNPQKYLAQVFQALRIVVNDEFGALKDMLNQSAEVLKPGGKL 232

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            +++FHSLEDRLVK F    +G+  A          P +F+ +TKK V  + E++  N R
Sbjct: 233 AIITFHSLEDRLVKNFMK--TGQFEAQEDTFSYETPPKLFRLVTKKPVTASPEELKRNTR 290

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 291 SRSAKLRVAEKI 302


>gi|224826070|ref|ZP_03699173.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002]
 gi|224601707|gb|EEG07887.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002]
          Length = 320

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/321 (36%), Positives = 176/321 (54%), Gaps = 12/321 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +   +  H+ VLL + +A L   P  V +D TFG GG+SR           ++A D+DP 
Sbjct: 1   MSAPVFSHLTVLLSEAVAALAVRPDGVYVDCTFGRGGHSRLILSQLGPAGRLVAFDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   E +     +F+L    F  L    D +    VDGV+ DLGVSS QID   RGFS
Sbjct: 61  AIA-AGERLAAEDPRFTLVHEGFETLARELDRLGIARVDGVLMDLGVSSPQIDDARRGFS 119

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G++A++ +  A  +D+  ++   GEE+ A +IA AIV +R+ AP 
Sbjct: 120 FRFDAPLDMRMDTSRGLTAAEWLATAAEEDIREVIKTYGEERFARKIAAAIVAQRELAPL 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT+ L+ L+ + V   +  +  PATR+FQA+RI++N E+EEL   L  A + L  GG L
Sbjct: 180 ETTRQLAQLVGQNVRTREPGQ-DPATRTFQAIRIYINRELEELKAVLPQAAQRLAEGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFN 303
            V+SFHSLEDR+VK F    S        ++   ++      +++  K V  + ++V  N
Sbjct: 239 AVISFHSLEDRIVKNFMRDASSDAKLPSWVMVRSADLPEPPLRTV-GKPVRASDDEVNGN 297

Query: 304 RRSRSAKLRAGMRTVERSIED 324
            RSRSA +R   RT     E+
Sbjct: 298 PRSRSAIMRIAERTAGAWREE 318


>gi|22127508|ref|NP_670931.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM 10]
 gi|45443369|ref|NP_994908.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595030|ref|YP_069221.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           32953]
 gi|108809545|ref|YP_653461.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Antiqua]
 gi|108810578|ref|YP_646345.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Nepal516]
 gi|150260418|ref|ZP_01917146.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125]
 gi|153947578|ref|YP_001402352.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           31758]
 gi|162419065|ref|YP_001607303.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola]
 gi|165928201|ref|ZP_02224033.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937803|ref|ZP_02226364.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008805|ref|ZP_02229703.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212069|ref|ZP_02238104.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401265|ref|ZP_02306765.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422048|ref|ZP_02313801.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426442|ref|ZP_02318195.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470126|ref|ZP_02334830.1| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1]
 gi|170025741|ref|YP_001722246.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           YPIII]
 gi|186894036|ref|YP_001871148.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927743|ref|YP_002345618.1| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92]
 gi|229837062|ref|ZP_04457227.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Pestoides
           A]
 gi|229840435|ref|ZP_04460594.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843023|ref|ZP_04463173.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900770|ref|ZP_04515894.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Nepal516]
 gi|270487860|ref|ZP_06204934.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27]
 gi|294502635|ref|YP_003566697.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003]
 gi|20139012|sp|Q8ZIF7|RSMH_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85542907|sp|Q66EL3|RSMH_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122979342|sp|Q1C206|RSMH_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123246757|sp|Q1CMN5|RSMH_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504671|sp|A7FM74|RSMH_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504678|sp|B2K4D8|RSMH_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504680|sp|A9R132|RSMH_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504693|sp|B1JK89|RSMH_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21960606|gb|AAM87182.1|AE013965_9 putative apolipoprotein [Yersinia pestis KIM 10]
 gi|45438238|gb|AAS63785.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588312|emb|CAH19920.1| S-adenosyl-dependent methyl transferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774226|gb|ABG16745.1| hypothetical protein YPN_0413 [Yersinia pestis Nepal516]
 gi|108781458|gb|ABG15516.1| hypothetical protein YPA_3554 [Yersinia pestis Antiqua]
 gi|115346354|emb|CAL19226.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149289826|gb|EDM39903.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125]
 gi|152959073|gb|ABS46534.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           31758]
 gi|162351880|gb|ABX85828.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola]
 gi|165914215|gb|EDR32831.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919812|gb|EDR37113.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992144|gb|EDR44445.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206815|gb|EDR51295.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960185|gb|EDR56206.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049290|gb|EDR60698.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167054540|gb|EDR64348.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752275|gb|ACA69793.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           YPIII]
 gi|186697062|gb|ACC87691.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682109|gb|EEO78201.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Nepal516]
 gi|229689899|gb|EEO81958.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696801|gb|EEO86848.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706005|gb|EEO92014.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Pestoides
           A]
 gi|262360665|gb|ACY57386.1| S-adenosyl-methyltransferase [Yersinia pestis D106004]
 gi|262364611|gb|ACY61168.1| S-adenosyl-methyltransferase [Yersinia pestis D182038]
 gi|270336364|gb|EFA47141.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27]
 gi|294353094|gb|ADE63435.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003]
 gi|320016913|gb|ADW00485.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 320

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 176/323 (54%), Gaps = 19/323 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++        H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NNKTVDNNYKHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   ++       +FS+    FS L  YV D      +DG++ DLGVSS Q+D  +
Sbjct: 64  DPEAIEAAKQI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       ++   HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDR+VK F    S        +  + A          +S+ K  ++P 
Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPG 297

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             ++A N R+RS+ LR   R  E
Sbjct: 298 DAEIAENPRARSSVLRFAERIGE 320


>gi|298480587|ref|ZP_06998784.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22]
 gi|298273408|gb|EFI14972.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22]
          Length = 304

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 163/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  PG   +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIQPGGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   GI+A+D+VN    + L  +  + GE K + ++A  IVK R     +
Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKARSGQNIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L++A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|261253815|ref|ZP_05946388.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891]
 gi|260937206|gb|EEX93195.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891]
          Length = 324

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 11  EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGDNGRLYSIDRDPQAIA 70

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 71  EAGKI---DDPRFTIIHGPFSGMAQYAAEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 127

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAP 184
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R   ++ P
Sbjct: 128 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 188 MTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++++V
Sbjct: 248 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEDQIKALGSANLKPVGKAIKPSKQEV 307

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 308 EENTRSRSSVLRIAEK 323


>gi|227512227|ref|ZP_03942276.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227084621|gb|EEI19933.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577]
          Length = 315

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 10/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+
Sbjct: 5   KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R Y   ++ SL    F  ++  + D+    +DG+V+DLGVSS Q D   RGFS++   
Sbjct: 65  HLRQYVENDKLSLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM       A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT D
Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L +LI++ +   ++ +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++
Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK  F  ++       ++          ++ IT+K ++P ++++A N R+ S
Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNHRAHS 304

Query: 309 AKLRAGMRTV 318
           AKLR   RT 
Sbjct: 305 AKLRIIERTK 314


>gi|260886497|ref|ZP_05897760.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|330839659|ref|YP_004414239.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|260863640|gb|EEX78140.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|329747423|gb|AEC00780.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
          Length = 311

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  V+ E+ +A L   P    +D T G  G++R           +I LD+D  A+   +E
Sbjct: 5   HTSVMPEETLAALAVKPAGTYIDCTLGGAGHARRIADRLSPAGRLIGLDQDEAAIRAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   +  + ++ F  L   +       VDGV+FDLGVSS QID  +RGFS+ +  PL
Sbjct: 65  RLANVSCRVDVVRSNFRALDSVLQSLGVTSVDGVLFDLGVSSHQIDTAERGFSYMQDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S + SA +VVN+ +  +L  I    GEE+ A RIA  IV  RQ  P +TT +L 
Sbjct: 125 DMRMDTSRLLSAHEVVNEYDEAELWHIFRDYGEERWAKRIAEFIVAARQEKPIETTGELV 184

Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++ + V     +    HPA R FQA+RI VN+E+  L   + +A  AL  GG + V++F
Sbjct: 185 DIVCRAVPKGVRRAAGGHPAKRIFQAIRIEVNDELGILQASVENAVHALAPGGRIAVLTF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+     +   +    +      H    + +  K   P+  + A N R++SA
Sbjct: 245 HSLEDRIVKQALKELARGCICPPGLPVCVCGHEPKVRLL-GKAQKPSAAEAAENPRAKSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVAEK 310


>gi|229552071|ref|ZP_04440796.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|229314504|gb|EEN80477.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1]
          Length = 313

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F   S      R +     A    +Q + +K ++P+  ++A N R+ 
Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAH 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +   
Sbjct: 302 SAKLRVIEKIRN 313


>gi|260773502|ref|ZP_05882418.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14]
 gi|260612641|gb|EEX37844.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14]
          Length = 316

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 164/316 (51%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ESFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 63  EASKI---DDPRFTIIHGPFSGIAEYAQRYNLQGQVDGVLFDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + G+S +  +  A + D+T ++   GE+K A RIA AIV  R +     
Sbjct: 120 KDGPLDMRMDPNSGVSVAQWLLTAELDDITWVIREFGEDKHARRIAKAIVAHRDNPDNEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTSQLAKLISEAAPKSFKEKKHPATRTFQAFRIYINSELEEIDIALQGAASILAPQGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P+  +V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPDVPHGLPLTQDQIKALGSAKLKAIGKAIKPSDHEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
           A N RSRS+ LR   +
Sbjct: 300 ALNPRSRSSVLRIAEK 315


>gi|254238917|ref|ZP_04932240.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170848|gb|EAZ56359.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 313

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D
Sbjct: 1   MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121
           +DP A+  G+  +     +F + Q +F++L D V     +  VDGV+ DLGVSS Q+D  
Sbjct: 56  KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RR
Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF+ T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L 
Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +   +        +  K    ++E
Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA +R   +
Sbjct: 294 ELKANPRSRSAVMRVAEK 311


>gi|15606908|ref|NP_214289.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5]
 gi|8134826|sp|O67721|RSMH_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2984161|gb|AAC07695.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5]
          Length = 294

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/305 (39%), Positives = 177/305 (58%), Gaps = 22/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVLL + +  L    GK+ +D T G GG+++   K   +  +I +DRD  A+   +E 
Sbjct: 5   HKPVLLRESVEFLTENGGKIYVDCTLGGGGHAKEILKKRKDIFLIGIDRDEEAIEIAKEN 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +FS+++A F  L   + +     VDG +FDLGVS  Q+   +RGF+FQ+  PLD
Sbjct: 65  LKEFEGRFSIYKANFKDLDLVLKEEGIDKVDGFLFDLGVSMYQLKG-ERGFTFQEDQPLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM      +A  VVN    ++L RIL   GEEK A RIA AIV+RR+  P +TT +L  
Sbjct: 124 MRMDKEQTLTACKVVNNYPERELIRILKEYGEEKFAVRIAKAIVQRRKKKPIETTGELVD 183

Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I   V  + K+ +IHPATR+FQA+RI VN E+E L + L        + G L+V++FHS
Sbjct: 184 VILSVVPEYYKHGKIHPATRTFQAIRIEVNKELESLKEALEKTPYHFNSKGRLVVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK F   +  + +              F+ ITKK V P++E++  N  SRSAKLR
Sbjct: 244 LEDRIVKHFIKEKEKEGI--------------FRIITKKPVTPSEEEIRENPASRSAKLR 289

Query: 313 AGMRT 317
              + 
Sbjct: 290 VAEKI 294


>gi|218131855|ref|ZP_03460659.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697]
 gi|217986158|gb|EEC52497.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697]
          Length = 305

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 16/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A              F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFS
Sbjct: 61  AEQN-----IVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G +A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  D   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 STIGDFLDIIKP--LFGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNIQTP--FRLVNNKVIVPDETEIERNPR 291

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 292 SRSAKLRIAEKIE 304


>gi|317474530|ref|ZP_07933804.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909211|gb|EFV30891.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 305

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 16/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A              F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFS
Sbjct: 61  AEQN-----IVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G +A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  D   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 STIGDFLDIIKP--LFGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDETEIERNPR 291

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 292 SRSAKLRIAEKIE 304


>gi|328471991|gb|EGF42868.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio parahaemolyticus
           10329]
          Length = 316

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 169/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV+ R++   + 
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G 
Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A              K + P++ ++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKHEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|218893511|ref|YP_002442380.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa LESB58]
 gi|262825031|sp|B7UZJ8|RSMH_PSEA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218773739|emb|CAW29553.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D
Sbjct: 1   MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121
           +DP A+  G+  +     +F + Q +F++L D V     +  +DGV+ DLGVSS Q+D  
Sbjct: 56  KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRIDGVLLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RR
Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF+ T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L 
Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +   +        +  K    ++E
Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA +R   +
Sbjct: 294 ELKANPRSRSAVMRVAEK 311


>gi|199598136|ref|ZP_03211558.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus rhamnosus HN001]
 gi|199590897|gb|EDY98981.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus rhamnosus HN001]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F   S      R +     A    +Q + +K ++P+  ++A N R+ 
Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAH 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +   
Sbjct: 302 SAKLRVIEKIRN 313


>gi|197334561|ref|YP_002157005.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11]
 gi|263504510|sp|B5FB43|RSMH_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|197316051|gb|ACH65498.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11]
          Length = 316

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 18/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                HV VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +        +F++    FS L+ YV +      +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAKTI---TDPKFTIIHGPFSGLKQYVEELELVGKIDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF- 185
            K GPLDMRM  + GI  S  + +A+V+D+T ++   GE+K A RIA  IV  R++    
Sbjct: 119 MKDGPLDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYRENEENE 178

Query: 186 --QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
               T  L+ LI +    S   + HPATR+FQA RI++N+E++E+   L+ A   L   G
Sbjct: 179 PLTRTSQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299
            L V+SFHSLEDR+VK F    S        +  +                K + PT+ +
Sbjct: 239 RLSVISFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N RSRS+ LR   R
Sbjct: 299 VDVNVRSRSSVLRIAER 315


>gi|257092216|ref|YP_003165857.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044740|gb|ACV33928.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 316

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 112/322 (34%), Positives = 175/322 (54%), Gaps = 18/322 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H  VLL++ +  L   P    +D TFG GG+SR+  +    G  ++A DRDP 
Sbjct: 1   MSQE-SPHQTVLLQEAVEALAIKPAGTYVDGTFGRGGHSRAILQRLGTGGRLLAFDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDR 123
           AV+       +   +  +    F  L D +       ++G+DGV+ D+GVSS Q+D   R
Sbjct: 60  AVAMAS---GETDARLLVMHERFGDLADALRRAGCAVEQGIDGVLLDIGVSSPQLDEHAR 116

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+   PLDMRM    G +A+  + +A+ +++T ++   GEE+ A +IA  IV  R  
Sbjct: 117 GFSFRGDAPLDMRMDTTQGETAAQWLGRASEQEITEVIRNYGEERFAFQIAKKIVAARGE 176

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               TT +L++L+++TV   +  +   ATR+FQALRI +N E+E+LA  L  A   LKAG
Sbjct: 177 RSVATTGELAALVRQTVRTREPGQ-DAATRTFQALRIHINQELEQLALVLPQAMTVLKAG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDV 300
           G L+V+SFHSLEDR+VK+F    +      R +    ++  P   + I  K V  +  ++
Sbjct: 236 GRLVVISFHSLEDRIVKRFLRDEAAPDRLPRKLPLRAADLPPPRLRLI-GKPVRASAAEI 294

Query: 301 AFNRRSRSAKLRAGMRTVERSI 322
           A N R+RSA +R   +   ++ 
Sbjct: 295 AANPRARSAIMRVAEKLARKAA 316


>gi|154500741|ref|ZP_02038779.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC
           29799]
 gi|150270630|gb|EDM97939.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC
           29799]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 165/312 (52%), Gaps = 8/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +      H PVLL++ I  LN  P    +DAT G  G+SR   +      +I +DRD  A
Sbjct: 1   MSEMEFSHKPVLLQECIDGLNIDPTGTYVDATLGRAGHSREIARRLTTGRLICIDRDQAA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +      +    ++ +L    F  L D +       + GV+ DLGVSS Q+D   RGFS+
Sbjct: 61  LDAAPGRLEGLMDRVTLVHGNFGDLADILDRLKLDKLSGVLADLGVSSPQLDDASRGFSY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S   +A  VVN+   +++ RIL   GEE+ A  IA AIV+ R+ AP +
Sbjct: 121 MADAPLDMRMDQSEALTARTVVNEWPQEEIRRILFQFGEERYAPAIAAAIVRAREKAPIE 180

Query: 187 TTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +       + HPA RSFQA+RI VN+E+    + +++A  AL  GG L
Sbjct: 181 TTLELVDIIRSAMPAHALCEKQHPAKRSFQAIRIAVNDELSAADKLIQAAVPALAPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            ++SFHSLEDR+VK  FA+ +                  V + + KK +V  +E++  N 
Sbjct: 241 AIISFHSLEDRIVKNAFAAFAKGCTCPPDFPVCVCGKKPVIRLVNKKPIVSGEEELNENA 300

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLR   +
Sbjct: 301 RARSAKLRIAEK 312


>gi|290476461|ref|YP_003469366.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii
           SS-2004]
 gi|289175799|emb|CBJ82602.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii
           SS-2004]
          Length = 314

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 174/320 (54%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MANSHYKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGADGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS+L  Y+ +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIEAAKAI---TDPRFSITHGPFSELATYIEEAGLVGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SA++ + +A   D+  +L   GEE+ A RIA AIV R Q   
Sbjct: 118 SFMRDGPLDMRMDPTRGQSATEWLMKAEADDIAWVLKTFGEERFAKRIARAIVARNQEGQ 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T++L+ LI +     K    HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 178 ITRTRELAELIAQA-SPVKEKHKHPATRSFQAIRIYINSELEEIERALNGALQVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  +            +SI K  + P++++
Sbjct: 237 LSVISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTETQLKAQGGRSLKSIGK--LKPSEDE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           V  N R+RS+ LR   +  E
Sbjct: 295 VVINPRARSSVLRFAEKAGE 314


>gi|94987539|ref|YP_595472.1| S-adenosyl-methyltransferase MraW [Lawsonia intracellularis
           PHE/MN1-00]
 gi|172046236|sp|Q1MPC6|RSMH_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94731788|emb|CAJ55151.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 312

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 182/310 (58%), Gaps = 11/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H PV+LE+ IA+L P      LD T G GG+S +  +    G+ +  LD+D  A++  +
Sbjct: 1   MHQPVMLEETIAMLKPHAKGRYLDGTVGLGGHSFAILQSAGDGAELCGLDQDKKALAIAE 60

Query: 76  ETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            T++ +K++  L    +S    +   +  K +DG + D+GVSS+Q+D  +RGFSF   GP
Sbjct: 61  MTLKPFKKRVHLVHTKYSSFPLILKALGWKLLDGALIDIGVSSLQLDNAERGFSFLYDGP 120

Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM    +  S  ++VN++  + L  I+   GEE QA+RIA AIV++R++ P  TT++
Sbjct: 121 LDMRMDQDANNNSLFEIVNKSRQEYLKDIISRYGEEPQANRIAKAIVQKRRTKPITTTKE 180

Query: 191 LSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ LI++    +   +   HPAT++FQA RI VN+E+ EL + L      +  GG + V+
Sbjct: 181 LADLIEQAYPAAWRAKSRHHPATKTFQAFRIVVNSELNELEKFLNMIMGWIAPGGRVAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK++  S +   +   +  +    H      ITKK + P++++++ N RSR
Sbjct: 241 SFHSLEDRIVKQYMKSWTRSCICPPYVPVCKCFHKPEAILITKKPIRPSEKEISENIRSR 300

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 301 SAKLRVAEKV 310


>gi|15902346|ref|NP_357896.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae R6]
 gi|116515442|ref|YP_815821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39]
 gi|225853917|ref|YP_002735429.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA]
 gi|30315982|sp|P59658|RSMH_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122279293|sp|Q04MC7|RSMH_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825666|sp|C1CCA8|RSMH_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1524350|emb|CAB01927.1| OrfD [Streptococcus pneumoniae]
 gi|15457856|gb|AAK99106.1| YllC protein [Streptococcus pneumoniae R6]
 gi|116076018|gb|ABJ53738.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39]
 gi|225724201|gb|ACO20054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA]
          Length = 316

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + +++K ++P+ E++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVVRKI 314


>gi|225077130|ref|ZP_03720329.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens
           NRL30031/H210]
 gi|224951541|gb|EEG32750.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens
           NRL30031/H210]
          Length = 320

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 167/315 (53%), Gaps = 12/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLL + +  L      + +D TFG GG+SR           ++  D+DP A++
Sbjct: 5   ENYQHVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +    ++ S+    F   Q  + +     +DG +FDLG+SS QID G RGFSF+ 
Sbjct: 65  VANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT
Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V+
Sbjct: 184 HKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +   N R+
Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTETEANPRA 301

Query: 307 RSAKLRAGMRTVERS 321
           RSA LR   R+    
Sbjct: 302 RSAVLRVAERSSGEF 316


>gi|84686327|ref|ZP_01014221.1| methyltransferase MraW/YabC [Maritimibacter alkaliphilus HTCC2654]
 gi|84665510|gb|EAQ11986.1| methyltransferase MraW/YabC [Rhodobacterales bacterium HTCC2654]
          Length = 330

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 140/326 (42%), Positives = 198/326 (60%), Gaps = 5/326 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M  A       H+PVLL  ++  + P    V +D TFGAG Y+R   + G+  VI +DRD
Sbjct: 1   MMVAAAARPSPHIPVLLRPLLETVAPVS-GVWIDGTFGAGSYARGLVEAGAETVIGIDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +  + DY  +  L + TFS + +   D  VDGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAHEMAEGWLADYDGRIRLERGTFSDMDEIAGD-PVDGVVLDLGVSSMQLDLAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G +A+D+VN+A  ++L  IL   GEE+ + RIA  IV+ R++  F+T
Sbjct: 119 MRDGPLDMRMSQEGPTAADLVNEAPEEELADILYHYGEERASRRIARQIVRAREAESFKT 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+  ++K +   K  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L V
Sbjct: 179 TAQLAETVEKCLPRPKPGQSHPATRSFQAIRIAVNDEFGQLAEGLEAAERALKPGGKLAV 238

Query: 248 VSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHSLEDR+VK+F   + S      R+   +  H   F    ++ + P +E++A N R+
Sbjct: 239 VTFHSLEDRVVKRFLQLAASTGGGGSRYAPAAEDHTPRFDLTPRRAIAPDEEELAENPRA 298

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RS++LR   RT   +   D S + LP
Sbjct: 299 RSSRLRVATRTDAPAERTDRSKLGLP 324


>gi|242373465|ref|ZP_04819039.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           M23864:W1]
 gi|242348828|gb|EES40430.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           M23864:W1]
          Length = 304

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 157/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E +++
Sbjct: 1   MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTAIENAKEVLKE 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHNNFRELTNILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKLDMRM 120

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT  L  +I+
Sbjct: 121 DQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQQPIETTLQLVDIIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQA+RI VN+E+      +  A + +K  G + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIENVKVNGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R   I   A+    + + +K +  T+ED+  N R+RSAKLR  
Sbjct: 241 RLCKQIFQEYEKGPEVPRGLPIIPEAYSPKLKRVNRKPITATEEDLDENNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|241205565|ref|YP_002976661.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|262825385|sp|C6ARU7|RSMH_RHILS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240859455|gb|ACS57122.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 341

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 170/309 (55%), Positives = 214/309 (69%), Gaps = 1/309 (0%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
           PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  +  +  +F L  + FS
Sbjct: 33  PAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVAAHGGRFKLVHSQFS 92

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
            L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS  G+SA+DVVN+A V
Sbjct: 93  HLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSAEGVSAADVVNRAKV 152

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
            DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+        ++IHPATR 
Sbjct: 153 ADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRV 212

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQALRIFVN+E+ ELAQ L +AE ALK GG L+ V+FHSLEDR+VKKFF+ R+GK    R
Sbjct: 213 FQALRIFVNDELGELAQALFAAEAALKPGGRLVAVTFHSLEDRIVKKFFSDRAGKASGSR 272

Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPR 332
           H+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT   +   D S    P 
Sbjct: 273 HLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEAAAEAADMSLFGFPN 332

Query: 333 LPTLSQFRG 341
           L +L +  G
Sbjct: 333 LASLGKLGG 341


>gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
 gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
          Length = 307

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            I  HVPV+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MIQSHVPVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFVNTAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +        +         + IT K +  + ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALASSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|116052453|ref|YP_792766.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|122257540|sp|Q02H20|RSMH_PSEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115587674|gb|ABJ13689.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 120/318 (37%), Positives = 182/318 (57%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D
Sbjct: 1   MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121
           +DP A+  G+  +     +F + Q +F++L D V     +  VDGV+ DLGVSS Q+D  
Sbjct: 56  KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM+   GISA++ +  A  +++ R+  + GEE+ A R+A AIV+RR
Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKVYGEERFAKRMARAIVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF+ T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L 
Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +   +        +  K    ++E
Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA +R   +
Sbjct: 294 ELKANPRSRSAVMRVAEK 311


>gi|87161763|ref|YP_493770.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194885|ref|YP_499685.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253731798|ref|ZP_04865963.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|87127737|gb|ABD22251.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202443|gb|ABD30253.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253724469|gb|EES93198.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|298694470|gb|ADI97692.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302751002|gb|ADL65179.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|320141006|gb|EFW32853.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143062|gb|EFW34852.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 304

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 156/301 (51%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E ++D
Sbjct: 1   MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L  +I+
Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQALRI VN+E+      +  A + +K  G + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R +     A+    + + +K +  T+ED+  N R+RSAKLR  
Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|25010349|ref|NP_734744.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae NEM316]
 gi|30173049|sp|Q8E782|RSMH_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23094701|emb|CAD45920.1| unknown [Streptococcus agalactiae NEM316]
 gi|319744247|gb|EFV96612.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus agalactiae ATCC 13813]
          Length = 315

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S           ++ A D+D  A+     
Sbjct: 7   HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  Q +  +  F  L      +    ++G+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+ +    +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + + +K ++P+QE++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 307 KLRVARRI 314


>gi|325662359|ref|ZP_08150968.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086162|ref|ZP_08335244.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325471361|gb|EGC74584.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330406321|gb|EGG85835.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 316

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLLE+ +  LN  P  + +D T G GG++   CK      + I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAEEVCKQLNDKGSFIGIDQDAAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                +  + E+ ++ ++ +  ++  + ++    VDG++ DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AASVRLAGFGERVTIIRSNYCDMKSRLRERGIDKVDGIILDLGVSSYQLDTAERGFSYRV 120

Query: 130 SGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM       +  +VN  +  +L RI+   GE+K A  IA  IV  R+ AP +TT
Sbjct: 121 DAPLDMRMDRRQEKTARDIVNTYSEMELFRIIRDYGEDKFAKNIAKHIVMEREKAPIETT 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  +    + N  HPA R+FQA+RI +N E+E L   L    + L   G + +
Sbjct: 181 GQLCEIIRHAIPMKFQKNTGHPAKRTFQAIRIELNRELEVLRDTLDEMIELLNDNGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F           H       + +  + ITKK ++P ++++  N RS
Sbjct: 241 ITFHSLEDRIVKGIFKKNENPCTCPSHFPVCVCGNVSKGKVITKKPILPGEQELEENSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|315498857|ref|YP_004087661.1| s-adenosyl-methyltransferase mraw [Asticcacaulis excentricus CB 48]
 gi|315416869|gb|ADU13510.1| S-adenosyl-methyltransferase MraW [Asticcacaulis excentricus CB 48]
          Length = 327

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 130/313 (41%), Positives = 199/313 (63%), Gaps = 5/313 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           +   H+ VLL +VIA + P  G++++D TFGAGGY+R+F   G+ VIA DRD       +
Sbjct: 2   SEAPHISVLLNEVIAAVAPESGRLVVDGTFGAGGYTRAFLSRGAEVIAFDRDARVQPFVE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               D+ ++F      FS++   + +     VD +V D+GVSSMQ+D  DRGFSF + GP
Sbjct: 62  AVRGDFGDRFRFVNRPFSEMAAGLAELGVDRVDAIVLDIGVSSMQLDEADRGFSFMRDGP 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM+  G+SA+D+VN+    D+  I+ + GEE ++  IA AIVKRR+ APF+ T DL+
Sbjct: 122 LDMRMAVDGLSAADIVNEWAEADIAHIIWLYGEEHRSRAIAAAIVKRRKEAPFERTLDLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++++K V   + +++HPAT++FQALRI VN+E+ EL   L ++E+ LK  G+L VV+FHS
Sbjct: 182 AVVEKAVGGRRGDKVHPATKTFQALRIAVNDELGELESALEASERLLKPEGVLAVVTFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F A R+G+  +     P         ++  + + + P++ +++ N R+RSAK
Sbjct: 242 LEDRMVKSFLAERAGRTPSGSRHAPQIQTGPAPTYRLDSTRAIAPSEAELSGNPRARSAK 301

Query: 311 LRAGMRTVERSIE 323
           LRA  RT     +
Sbjct: 302 LRAARRTGHPPFD 314


>gi|148543819|ref|YP_001271189.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016]
 gi|184153222|ref|YP_001841563.1| hypothetical protein LAR_0567 [Lactobacillus reuteri JCM 1112]
 gi|227364723|ref|ZP_03848772.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682650|ref|ZP_08162167.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus reuteri MM4-1A]
 gi|263456253|sp|A5VJ28|RSMH_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456260|sp|B2G6K1|RSMH_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148530853|gb|ABQ82852.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016]
 gi|183224566|dbj|BAG25083.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070182|gb|EEI08556.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978489|gb|EGC15439.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus reuteri MM4-1A]
          Length = 318

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 176/313 (56%), Gaps = 13/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A LN  P    +DAT G GG++++  +     ++ + D+D  A+   +E
Sbjct: 5   KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     +++ +L +  F  L+  +    V     +++DLGVSS Q D   RGFS+Q   
Sbjct: 65  HLKTAIEQQKLTLVEDNFRNLKAELNSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA +VVN+   + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKVAPIKTTFE 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFAS---RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F      SG V     +IP+   P  F+ I KK +V + E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASDEELAANHRA 303

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +  E
Sbjct: 304 HSAKLRIIEKIRE 316


>gi|293366856|ref|ZP_06613532.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319157|gb|EFE59527.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 304

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E +++
Sbjct: 1   MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKEVLKE 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKLDMRM 120

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L  +I+
Sbjct: 121 DQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 180

Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R +     A+    + + +K +  T +D+  N R+RSAKLR  
Sbjct: 241 RLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|254362469|ref|ZP_04978577.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094061|gb|EDN74973.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 312

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 165/313 (52%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP A+
Sbjct: 2   SENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q        +F +    FS + +          +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQTI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSF 118

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA++ + Q + +DL  +L   GEE+ A RIA A+V   +SA  +
Sbjct: 119 MRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEK 178

Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            ++ L            K+   HPATRSFQA+RIF+N E++EL + L SA   L   G L
Sbjct: 179 ISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGELDELEKALNSALTVLAPEGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
            ++SFHSLEDR+VK+F    S  +   R +    A     +      K ++P++ ++  N
Sbjct: 239 SIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA LR   +
Sbjct: 299 ARSRSAVLRIAEK 311


>gi|46199019|ref|YP_004686.1| mraW protein [Thermus thermophilus HB27]
 gi|85701363|sp|P62476|RSMH_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46196643|gb|AAS81059.1| mraW protein [Thermus thermophilus HB27]
          Length = 285

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 26/301 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            HVPVL ++ + LL   PG V +DAT G  G++R   + G  VI LD+DP AV+  +   
Sbjct: 5   THVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL- 63

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +    ++ Q  F  L+ ++     + VDG++ DLGVSS  +D   RGFS+QK GPLDM
Sbjct: 64  --HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A +VVN+  ++ L R+L  LGEE QA RIA AIV  R+ AP +TT  L+ ++
Sbjct: 122 RMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +K V F +    HPA ++FQALRI+VN+E+  L + L  A + L   G L+V++FHSLED
Sbjct: 182 RKAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPRGRLVVIAFHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+F                     +  + +TKK +VP++++ A N R+RSAKLRA  
Sbjct: 240 RVVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAE 281

Query: 316 R 316
           +
Sbjct: 282 K 282


>gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
           149]
 gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
           149]
          Length = 330

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 139/311 (44%), Positives = 187/311 (60%), Gaps = 5/311 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76
             H+PVLL  ++  + P  G   LD TFGAGGY+R   + G+  VIA+DRDP A     +
Sbjct: 11  PPHIPVLLSAILDAVAPVHGD-WLDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAAD 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               Y  +       FS++  Y     +DGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 70  WADAYGARLVQQLGVFSKMDTY--ADALDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMR 127

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G SA+D+VN+A+ + +  IL   GEE+ + RIA AI+  R  AP  TT  L+ +I+
Sbjct: 128 MSQEGPSAADIVNEASAETIANILFQYGEERASRRIAKAILTERAIAPITTTLHLAGIIE 187

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + +  SK  + H ATRSFQALRI VN+E  EL QGL +AE+ALK GG L VV+FHS+EDR
Sbjct: 188 RCLPRSKPGQSHAATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVVTFHSVEDR 247

Query: 257 LVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F  +R+G                  F   ++K +V    +VA N R+RSAKLR  +
Sbjct: 248 MVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADYAEVAANPRARSAKLRIAV 307

Query: 316 RTVERSIEDDS 326
           RT   + E D+
Sbjct: 308 RTDAPAGEIDA 318


>gi|157373543|ref|YP_001472143.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3]
 gi|262826558|sp|A8FQ92|RSMH_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157315917|gb|ABV35015.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3]
          Length = 314

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 13/316 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +A LN     + +D TFG GG+SR   K       +IA+DRDP 
Sbjct: 1   MMSQEFAHLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++  ++   D +  FS+    F QL  YV D      +DGV+ D GVSS Q+D  +RGF
Sbjct: 61  AIAAAEQFADDAR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGF 118

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A+D + +A ++D+  +    GEEK +  IA  I   R+  P
Sbjct: 119 SFLRDGPLDMRMDNSQGETAADWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T++L+ LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G 
Sbjct: 179 FLRTKELADLIAR-ISKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALSVLAPHGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L V+SFHSLEDR+VK+F             +  + A     + +    K + P++E+V  
Sbjct: 238 LSVISFHSLEDRMVKRFIRRHCQGESVPHGLPITEAEINKSRLLKGIGKAIKPSEEEVER 297

Query: 303 NRRSRSAKLRAGMRTV 318
           N R+RS+ LR   R  
Sbjct: 298 NTRARSSVLRIAERLE 313


>gi|55823597|ref|YP_142038.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus
           CNRZ1066]
 gi|55739582|gb|AAV63223.1| S-adenosylmethionine-dependent methyltransferase, putative
           [Streptococcus thermophilus CNRZ1066]
          Length = 354

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 167/322 (51%), Gaps = 15/322 (4%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
            K M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 36  IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQ 117
             D+D  A+   Q  ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q
Sbjct: 91  CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I
Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G + V++FHSLEDRL K+ F   S   +                 + +K ++P
Sbjct: 271 LDLLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILP 330

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           +QE++  N RS SAKLR   + 
Sbjct: 331 SQEELEANNRSHSAKLRVAKKI 352


>gi|323440951|gb|EGA98658.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O11]
 gi|323442268|gb|EGA99898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O46]
          Length = 304

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E ++D
Sbjct: 1   MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +   +A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L  +I+
Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQALRI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVGGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R +     A+    + + +K +  T+ED+  N R+RSAKLR  
Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|88858794|ref|ZP_01133435.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2]
 gi|88819020|gb|EAR28834.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2]
          Length = 312

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 184/313 (58%), Gaps = 15/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H+ VL+E+ I  L+  P  + +D TFG GG+S    K       + A+DRDP A+
Sbjct: 2   SENFQHISVLMEETIDALDIKPDGIYIDGTFGRGGHSGEILKKLGENGRLQAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              Q    D +  FS+   TFS+++    +      VDG++ D+GVSS Q+D  +RGFSF
Sbjct: 62  KAAQRFADDAR--FSIAHNTFSEIKLVAEEADLIGKVDGILLDIGVSSPQLDDAERGFSF 119

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K GPLDMRM+ S G SA++ +  A+++++T ++   GEEK   RIAH I++ R   P  
Sbjct: 120 MKDGPLDMRMNPSAGRSAAEWLAVADLEEITWVIKTYGEEKFGRRIAHKILETRVHTPIT 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +T  L+ LI + V   K+   HPATR+FQA+RI++N+E+EE+   L ++ + LK GG L+
Sbjct: 180 STAQLAKLIDEAV-PVKDKHKHPATRAFQAIRIYINSELEEITTALSASLEVLKPGGRLV 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK+F   +S      R +  +N         ++I  K + P +E++A N
Sbjct: 239 VISFHSLEDRIVKQFIKKQSKGEALPRGLPLTNAQLQQKLTLKAI-GKAIKPGEEELARN 297

Query: 304 RRSRSAKLRAGMR 316
            R+RS+ LR   R
Sbjct: 298 SRARSSVLRIAER 310


>gi|241760229|ref|ZP_04758325.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114]
 gi|241319340|gb|EER55805.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114]
          Length = 320

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 169/316 (53%), Gaps = 12/316 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLL + +  L      + +D TFG GG+SR           ++  D+DP A++
Sbjct: 5   ENYQHVTVLLHEAVDALAIRKDGIYVDGTFGRGGHSRLILSRLSEQGRLVVFDKDPEAIA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +    ++ S+    F   Q  + +     +DG +FDLG+SS QID G RGFSF+ 
Sbjct: 65  VANE-LAKQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT
Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ L+ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V+
Sbjct: 184 RKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +   N R+
Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTETEANPRA 301

Query: 307 RSAKLRAGMRTVERSI 322
           RSA LR   R+    +
Sbjct: 302 RSAVLRVAERSSGEFL 317


>gi|261493507|ref|ZP_05990029.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495860|ref|ZP_05992292.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308487|gb|EEY09758.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310840|gb|EEY12021.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 312

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 166/313 (53%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP A+
Sbjct: 2   SENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q        +F +    FS + +          +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQTI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSF 118

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA++ + Q + +DL  +L   GEE+ A RIA A+V   +SA  +
Sbjct: 119 MRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEK 178

Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            ++ L            K+   HPATRSFQA+RIF+N+E++EL + L SA   L   G L
Sbjct: 179 ISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALNSALTVLAPEGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
            ++SFHSLEDR+VK+F    S  +   R +    A     +      K ++P++ ++  N
Sbjct: 239 SIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA LR   +
Sbjct: 299 ARSRSAVLRIAEK 311


>gi|323466809|gb|ADX70496.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           helveticus H10]
          Length = 349

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 109/337 (32%), Positives = 171/337 (50%), Gaps = 21/337 (6%)

Query: 1   MESKSCKTMSS------AIHHTI--GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR 52
           ++ K  KTM +       +++ I    H  VLL + I  L P  G + +DATFG GG+++
Sbjct: 12  LKKKLTKTMMTLLKIWTTLNYKIMKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAK 71

Query: 53  SFCKM--GSNVIALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQD----YVPD 101
                     ++  D+D +A+   +    D      + +  L    FS L+         
Sbjct: 72  YLLSKIETGTLVGFDQDEYAIKSAELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYS 131

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRIL 160
            G+DG+ +DLGVSS Q D  DRGFS++ +  LDMRM  S  + A  +VN  + K+L  IL
Sbjct: 132 DGIDGIYYDLGVSSPQFDQADRGFSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADIL 191

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRI 219
              G+EK + +IAH IV+RR+  P  TT  L  +I++ +    +    HPA +SFQALR+
Sbjct: 192 YQYGDEKFSRQIAHRIVERRKDKPIVTTFQLVDIIKEAIPAYARRTGGHPAKKSFQALRV 251

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
            VN+E++ L   L  A + L+ GG + V++F S ED++VKK F   S   +        +
Sbjct: 252 AVNHELDVLQASLEEAIRILRPGGRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPD 311

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 +   +K +  +  ++  N RS SAKLR   +
Sbjct: 312 DMKPTLRLENRKPITASTSELENNNRSHSAKLRVAEK 348


>gi|76788170|ref|YP_329009.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909]
 gi|161485617|ref|NP_687320.2| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae
           2603V/R]
 gi|30173046|sp|Q8E1R8|RSMH_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909222|sp|Q3K394|RSMH_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76563227|gb|ABA45811.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909]
          Length = 315

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S           ++ A D+D  A+     
Sbjct: 7   HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  Q +  +  F  L      +    ++G+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + R      TT +
Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+ +    +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +      + + +K ++P+QE++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 307 KLRVARRI 314


>gi|237720371|ref|ZP_04550852.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4]
 gi|229450122|gb|EEO55913.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4]
          Length = 304

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 163/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +
Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQNIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L++A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|308069889|ref|YP_003871494.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681]
 gi|305859168|gb|ADM70956.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681]
          Length = 316

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 170/315 (53%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H+ VL E+    LN     + +D T G  G+S            +IA D+D +A++ 
Sbjct: 1   MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---------KGVDGVVFDLGVSSMQIDCGDRG 124
            +E +  Y+ + SL ++ F  LQD + +           V G++FDLGVSS Q D G+RG
Sbjct: 61  AREKLSAYEGKISLVKSNFRHLQDKLTELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S   +A ++VN+ +  ++ RIL   GEEK + RIA  +++RR + 
Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWSEAEIARILFHYGEEKFSRRIAKIMIERRLNK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  + +    HPA RSFQALRI VN+E+  L   L  A + L  G
Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDSLHQAIRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K  F     K +    +           + + +K ++ +++++ 
Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILEDKMEGDLKLVNRKPIMASEQELE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 301 LNPRSRSAKLRVAEK 315


>gi|55821677|ref|YP_140119.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMG
           18311]
 gi|55737662|gb|AAV61304.1| S-adenosylmethionine-dependent methyltransferase, putative
           [Streptococcus thermophilus LMG 18311]
          Length = 354

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 167/322 (51%), Gaps = 15/322 (4%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
            K M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 36  IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQ 117
             D+D  A+   Q  ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q
Sbjct: 91  CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I
Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G + V++FHSLEDRL K+ F   S   +                 + +K ++P
Sbjct: 271 LDLLAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKVALVNRKPILP 330

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           +QE++  N RS SAKLR   + 
Sbjct: 331 SQEELEANNRSHSAKLRVAKKI 352


>gi|152988306|ref|YP_001350328.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7]
 gi|262825003|sp|A6VB93|RSMH_PSEA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150963464|gb|ABR85489.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7]
          Length = 313

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 180/318 (56%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D
Sbjct: 1   MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121
           +DP A+  G+  +     +F + Q +F++L D V     +  VDGV+ DLGVSS Q+D  
Sbjct: 56  KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RR
Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIASAAEEEIARVFKEYGEERFAKRMARAIVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF+ T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L 
Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +   +        +  K    ++ 
Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEA 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA +R   +
Sbjct: 294 ELKANPRSRSAVMRVAEK 311


>gi|55981045|ref|YP_144342.1| S-adenosyl-methyltransferase MraW [Thermus thermophilus HB8]
 gi|68565453|sp|Q5SJD8|RSMH_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
           Dependent Methyltransferase Tt1512 From Thermus
           Thermophilus Hb8.
 gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
           Dependent Methyltransferase Tt1512 From Thermus
           Thermophilus Hb8.
 gi|55772458|dbj|BAD70899.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 285

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 26/301 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            HVPVL ++ + LL   PG V +DAT G  G++R   + G  VI LD+DP AV+  +   
Sbjct: 5   THVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL- 63

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +    ++ Q  F  L+ ++     + VDG++ DLGVSS  +D   RGFS+QK GPLDM
Sbjct: 64  --HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A +VVN+  ++ L R+L  LGEE QA RIA AIV  R+ AP +TT  L+ ++
Sbjct: 122 RMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +K V F +    HPA ++FQALRI+VN+E+  L + L  A + L  GG L+V++FHSLED
Sbjct: 182 RKAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+F                     +  + +TKK +VP++++ A N R+RSAKLRA  
Sbjct: 240 RVVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAE 281

Query: 316 R 316
           +
Sbjct: 282 K 282


>gi|222053873|ref|YP_002536235.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32]
 gi|263455960|sp|B9M164|RSMH_GEOSF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221563162|gb|ACM19134.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32]
          Length = 312

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HV VL  +VIA L P PG + +D T G  G++R   +       +I  D+D  A++   
Sbjct: 5   KHVSVLPAEVIAYLAPRPGGIYVDGTLGGAGHARLILEASAPDGLLIGFDQDGQALASAG 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++  L +  F+ L++ + +     +DG + D+GVSS Q+D  +RGFSFQ   P
Sbjct: 65  ERLAPFGKRVVLVKRNFAFLEEALAEIGIEAIDGFLLDVGVSSHQLDTVERGFSFQHDAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +  +A+++VN  + +DL R++   GEE+ A RIA  I+KRR+  P  TT  L
Sbjct: 125 LDMRMDLSAETTAAELVNTLSEEDLCRVIREYGEERWAKRIAAFIIKRREETPIATTLQL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V       R+HPATR+FQALRI VN+E+  L +GL    + LK GG  +V+SF
Sbjct: 185 VDVIKAAVPKGAWEVRLHPATRTFQALRIAVNDELASLEKGLSGGVRLLKKGGRGVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K  F S +      R +      +    + +T K VV  + +V+ N RSRSA
Sbjct: 245 HSLEDRIAKTTFRSLAQGCKCPREIPRCVCGNLPQVKVLTGKPVVANEVEVSSNPRSRSA 304

Query: 310 KLRAGMRT 317
           +LRA  + 
Sbjct: 305 RLRAVEKI 312


>gi|237716641|ref|ZP_04547122.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1]
 gi|262405416|ref|ZP_06081966.1| MraW methylase [Bacteroides sp. 2_1_22]
 gi|294809136|ref|ZP_06767854.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC
           1b]
 gi|229442624|gb|EEO48415.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1]
 gi|262356291|gb|EEZ05381.1| MraW methylase [Bacteroides sp. 2_1_22]
 gi|294443690|gb|EFG12439.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC
           1b]
          Length = 304

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +
Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|304437331|ref|ZP_07397290.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369587|gb|EFM23253.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 313

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 165/312 (52%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
           T   HV VL E+V+A LN  PG + +DAT G  G+++           +I +D+D  A++
Sbjct: 2   TEFHHVSVLPEEVVAALNVVPGGIYVDATLGGAGHAQRIAAQLSEQGRLIGIDQDETAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129
             +E + D + Q SL +  F  L   +  +GV  V   +FDLGVSS QID  +RGFS+ +
Sbjct: 62  AARERLADVRCQVSLVRDNFRHLTAILAAEGVSSVDGALFDLGVSSPQIDTPERGFSYMQ 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      SA DVVN    + LT I    GEE+ A RIA  I K RQ+ P  TT
Sbjct: 122 DAPLDMRMDQRARRSAYDVVNTYTAERLTEIFYTYGEERWAKRIASFIEKERQTHPITTT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            DL ++I + V    +    HPA R FQALRI VN+E+  L   L +A  AL+ GG L V
Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQALRIEVNDELGILEGALTAAVDALRIGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK      +   +   H  I    H    + I  K    +  +   N R+
Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPICVCGHTPEVRLI-GKARAASAAECRVNTRA 300

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 301 RSAKLRVAEKIK 312


>gi|152979594|ref|YP_001345223.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes
           130Z]
 gi|263446597|sp|A6VQP1|RSMH_ACTSZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150841317|gb|ABR75288.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes
           130Z]
          Length = 321

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 172/323 (53%), Gaps = 18/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           MS     +  +H  VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MSERNTFSHPEHTTVLLHEAVQGLALKEQGIYIDGTFGRGGHSRLILSRLSPNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A+   ++       +F +   +FS + +          VDG++ DLGVSS Q+D  
Sbjct: 61  RDPLAIVEAEKI---QDPRFQIEHNSFSAIPEICAKYGLTGKVDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF K GPLDMRM    G+SAS+ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 QRGFSFMKDGPLDMRMDTTKGLSASEWLAQVSERDLAWVLKTFGEERFAKRIAAAIVNYN 177

Query: 181 QSAPFQTTQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA  +  + L+  +Q      +    K+   HPATR+FQA+RIF+N+E++EL   L+SA
Sbjct: 178 KSAVEKNEEILNRTLQLAELISSAVPFKDKHKHPATRTFQAIRIFLNSELDELESVLQSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293
              L   G L V+SFHSLEDR+VK F   +S      + +          +++    K +
Sbjct: 238 LTVLAPQGRLSVISFHSLEDRMVKHFMRKQSRGEDIPKGLPLREEQIQRNRTLKTIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++ ++A N RSRSA LR   +
Sbjct: 298 QPSEREIAVNPRSRSAVLRIAEK 320


>gi|312869527|ref|ZP_07729682.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3]
 gi|311094974|gb|EFQ53263.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3]
          Length = 317

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 111/317 (35%), Positives = 171/317 (53%), Gaps = 11/317 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +      HV VLL++ +A LN  P    +D T G GG++ +        ++ + D+D  A
Sbjct: 1   MAMATFKHVTVLLQEAVAGLNVQPAGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETA 60

Query: 71  VSCGQETMRD--YKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +   ++ ++D     + +L +  F  LQ          VDGV++DLGVSS Q D   RGF
Sbjct: 61  IDYNRDRLKDALAAGKLTLIEDNFRHLQKDLAAQGVHKVDGVLYDLGVSSPQFDDAQRGF 120

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+Q   PLDMRM+    +SA +VVN+   + L RIL   GEE+ A +IA  I +RRQ  P
Sbjct: 121 SYQLDAPLDMRMNQGQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREP 180

Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG
Sbjct: 181 IRTTFELVDVIKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALAMLAVGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + V++F SLEDRLVK  F  +S     +     +        F+ I +K ++P  +++A
Sbjct: 241 RISVITFQSLEDRLVKTMFKEKSSISDDLPQGLPVIPEGMSPDFKLINRKPILPGTQELA 300

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+ SAKLR   +  
Sbjct: 301 ENHRAHSAKLRIIEKIK 317


>gi|89895661|ref|YP_519148.1| hypothetical protein DSY2915 [Desulfitobacterium hafniense Y51]
 gi|219670081|ref|YP_002460516.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense
           DCB-2]
 gi|122482071|sp|Q24TD8|RSMH_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446217|sp|B8FT64|RSMH_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89335109|dbj|BAE84704.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540341|gb|ACL22080.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense
           DCB-2]
          Length = 310

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL++ +  +   P    +D T G  G+S            ++  D+DP A+   Q+
Sbjct: 5   HVTVLLKETVDGVVRDPSGTYVDCTLGGAGHSGYVLSRLSEKGKLVGFDQDPLAIKNAQD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F L    F  L++ +       V GV+FDLGVSS Q+D  +RGFS+ +   L
Sbjct: 65  KFAGDPRVF-LVNRNFEGLEESLQSLELLPVQGVLFDLGVSSPQLDEAERGFSYMQDAEL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA  +VN+   + L  IL   GEEK + RI   IV+ R+     TT +L 
Sbjct: 124 DMRMNPQNPLSAKTLVNEGKAEMLAEILWKYGEEKWSKRIVEFIVEARKQKSITTTGELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +    +    HPA R+FQALRI VN+E+  L + L    + L  GG + V++FH
Sbjct: 184 DIIKRAIPAGARREGPHPAKRTFQALRIAVNDELGVLERALDQVIRCLAPGGRVGVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F S  G+        +      A+ + + +K ++P+ +++  N R+RSAK
Sbjct: 244 SLEDRIVKETFNSWLGRCTCPPVFPVCQCGARAMARLVHRKPILPSPQEIEANPRARSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRIAEK 309


>gi|270295456|ref|ZP_06201657.1| methylase MraW [Bacteroides sp. D20]
 gi|317478454|ref|ZP_07937614.1| MraW methylase [Bacteroides sp. 4_1_36]
 gi|270274703|gb|EFA20564.1| methylase MraW [Bacteroides sp. D20]
 gi|316905343|gb|EFV27137.1| MraW methylase [Bacteroides sp. 4_1_36]
          Length = 306

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 16/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  +++ D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFS
Sbjct: 61  A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G++A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 ATIGEFLEIVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP +E++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 291

Query: 306 SRSAKLRAGMRTVE 319
           SRSAKLR   R + 
Sbjct: 292 SRSAKLRIAERVMN 305


>gi|284048645|ref|YP_003398984.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM
           20731]
 gi|283952866|gb|ADB47669.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM
           20731]
          Length = 309

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  +   P  + +D T G GG+S            +I +D+D  A++   E
Sbjct: 5   HKSVLLEESVQWVVTDPKGIYVDCTLGGGGHSHRITELLDPEGLLIGIDQDEDAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D + Q  +    F  L   +       VDG++FDLGVSS Q+D  +RGFS+   GPL
Sbjct: 65  RLKDARCQVKIVHNNFRNLDQILDQLGIPQVDGILFDLGVSSYQLDTPERGFSYMHDGPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+    DL  ++   GEE+ A RIA  IV  R+  P +TT +L 
Sbjct: 125 DMRMDQEASLTAEQVVNRYKEDDLAGLIYKYGEERWAKRIAQFIVAARKEHPIRTTGELV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R+FQA+RI VN+E++ L   + +A   LK+GG + V++FH
Sbjct: 185 HIIKAAIPKGARQDGPHPAKRTFQAIRIEVNDELKILDATMEAAVHHLKSGGHIGVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K+ F       +    +           + +  K   P + ++A N R+RSA+
Sbjct: 245 SLEDRIIKQAFKRLQRGCICPPELPVCVCGRKPELKKL--KEFTPGEAELAENPRARSAR 302

Query: 311 LRAGMRT 317
           LR  ++ 
Sbjct: 303 LRGAVKI 309


>gi|262037275|ref|ZP_06010755.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264]
 gi|261748703|gb|EEY36062.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264]
          Length = 307

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 174/309 (56%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVL ++V+  +      + +D T G GG++    K     S VIA+D+D  A++ 
Sbjct: 1   MEYHKPVLFDEVMENIIKKEKAIYVDCTLGGGGHTEGILKSSSDDSKVIAIDQDIEAINF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ + +Y  +  +FQ  F  +   V       VD ++ D+GVSS Q+D  +RGFS++  
Sbjct: 61  AKKRLENYGNKMEIFQDNFRNIDTVVYFAGFNKVDRILMDIGVSSNQLDNIERGFSYKYE 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+    +SA DVVN+   K++  I+   GEE ++ +IA  IV+ R++   +TT 
Sbjct: 121 AKLDMRMNKELSVSAYDVVNKFAEKEIADIIYKYGEEPKSRKIAKNIVEYRKNKNIETTV 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LS ++ K++   K+ + HP+ R+FQA+RIFVN E+E L + L  A   L  GG L+V++
Sbjct: 181 ELSDIVIKSIG--KSMKKHPSKRTFQAIRIFVNKELEVLEEALDKAVNLLNKGGKLLVIT 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F       +    +        ++ + +TKK +    E++  N R+ S
Sbjct: 239 FHSLEDRMVKEKFRKYENPCVCPPELPVCVCKKESLGKIVTKKPITAKNEELEINNRAHS 298

Query: 309 AKLRAGMRT 317
           AKLR   R+
Sbjct: 299 AKLRIFERS 307


>gi|148980580|ref|ZP_01816127.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145961163|gb|EDK26479.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 316

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P    +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA  I+  +++     
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++ +V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPVGKAIKPSKGEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DENTRSRSSVLRIAEK 315


>gi|85858517|ref|YP_460719.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB]
 gi|123515897|sp|Q2LR39|RSMH_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85721608|gb|ABC76551.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB]
          Length = 315

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 9/309 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
             H PVLLE+ IA LN   G + +D T G GG++    +       ++ +D D  A+   
Sbjct: 7   SYHEPVLLEEAIASLNCRGGGIYVDGTVGGGGHAALILERSAPDGFLLGMDVDGDALQAA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ +  +  + +L +A ++ ++  + D     VDG++ DLGVSS Q+D  +RGFS  K  
Sbjct: 67  EKRLMPFGRRKTLVKANYADMRKVLADLKILQVDGILLDLGVSSHQLDAAERGFSLLKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA DVVN  + ++L  I+   GEE  A RIA AI ++R+  P ++T  
Sbjct: 127 PLDMRMDSEAGRSAYDVVNTCSERELKDIIRKYGEEIMAGRIARAIAEKRKDTPIKSTTQ 186

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++++   +    ++ +IHPATR+FQALRI++NNE+  L + +  +   LK GG   ++S
Sbjct: 187 LAAIVAGALPGGFRHKKIHPATRTFQALRIYINNELSNLHRAIFDSTDCLKPGGRFSIIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLED LVK  F S     +    M   +       + IT+K + P +++V  N RSRS
Sbjct: 247 FHSLEDSLVKNGFRSLEKGCICPADMPVCACGQSPRLKVITRKPISPCRDEVEANPRSRS 306

Query: 309 AKLRAGMRT 317
           A+LR   R 
Sbjct: 307 ARLRTAERI 315


>gi|317493287|ref|ZP_07951709.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918680|gb|EFV40017.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 314

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP 
Sbjct: 1   MSEENYQHKTVLLDEAVNGLNLRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGF 125
           A++   E       +FS+    FS +  YV     +  ++GV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIAAAAEI---TDPRFSIIHGPFSDMATYVRELGLEGQINGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P
Sbjct: 118 SFMRDGPLDMRMDPTRGLSAAEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVERNRLEP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T +L++LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 178 MTRTHELATLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALNGALEILSPEGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  + A          +++ K  + P+ ++
Sbjct: 237 LSVISFHSLEDRIVKQFIRHHSRGPQVPAGIPLTEAQLRSQGGRKLKALGK--MKPSSDE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           V+ N R+RS+ LR   RTVE
Sbjct: 295 VSANPRARSSVLRFAERTVE 314


>gi|291296375|ref|YP_003507773.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279]
 gi|290471334|gb|ADD28753.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279]
          Length = 283

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 120/303 (39%), Positives = 167/303 (55%), Gaps = 28/303 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           +H PVL  + +  L+  PG + +DAT G  G++R   + G  V+A D+DP A++  Q   
Sbjct: 2   NHTPVLYHEALDWLSIRPGGLYVDATLGGAGHTRGILERGGQVVAFDQDPAAIARAQAL- 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  +L QA F +L   +       VDG++ DLGVSS  +D   RGFS+Q  GPLDM
Sbjct: 61  --GLPNLTLIQANFRELVPELAKRGTPQVDGLLADLGVSSFHLDDAGRGFSYQHEGPLDM 118

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM    ++A +VVN    + L  IL   GEE +A RIA  I    +  P  TT  L+ +I
Sbjct: 119 RMGQGELTAHEVVNTYPEEALAEILFRYGEEPRARRIARFI---VEHRPIHTTTQLAEVI 175

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++   F   +  HPA +SFQALRI++N+E+  L Q LRSAE  LK GG L+V+SFHSLED
Sbjct: 176 RRATGF--RSAGHPARKSFQALRIYINDELGALEQLLRSAEAVLKPGGRLVVISFHSLED 233

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK F    +                   +S+TKK +VP++ +   N R+RSAK+R   
Sbjct: 234 RLVKHFLRESTA-----------------LRSLTKKPIVPSEAEQRENPRARSAKMRVAE 276

Query: 316 RTV 318
           R  
Sbjct: 277 RID 279


>gi|212635034|ref|YP_002311559.1| S-adenosyl-methyltransferase MraW [Shewanella piezotolerans WP3]
 gi|262826550|sp|B8CM48|RSMH_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212556518|gb|ACJ28972.1| S-adenosyl-methyltransferase mraW [Shewanella piezotolerans WP3]
          Length = 318

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 171/310 (55%), Gaps = 13/310 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
             +H+ VLL + +A LN     + +D TFG GG+SR   +       +IA+DRDP A+  
Sbjct: 4   SFEHLSVLLTETVAGLNIREDGIYIDGTFGRGGHSRKVLEQLGPNGRLIAIDRDPQAILA 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++   D +  F +    F QL  YV +      +DGV+ D GVSS Q+D  +RGFSF +
Sbjct: 64  AEQFKDDSR--FQIVHGGFGQLAQYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLR 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T
Sbjct: 122 DGPLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRT 181

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++L+ LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+
Sbjct: 182 KELADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F    S        +  + A     + +    K + P+ E++  N R+
Sbjct: 241 SFHSLEDRMVKRFIRRHSQGESVPHGLPITEAEINKSRKLKGIGKAIKPSAEEIERNARA 300

Query: 307 RSAKLRAGMR 316
           RS+ LR G R
Sbjct: 301 RSSVLRIGER 310


>gi|315125595|ref|YP_004067598.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913]
 gi|315014108|gb|ADT67446.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913]
          Length = 312

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VL+++ I  L   P  + +D TFG GG+S            + A+D+DP A+ 
Sbjct: 3   AQFEHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGESGRLQAIDQDPQAIK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++       +FS+  + FS+L +          VDG++ D+GVSS Q+D   RGFSF 
Sbjct: 63  SAEKF--ADDPRFSIAHSRFSKLYEVAEQNDLIGQVDGILLDIGVSSPQLDDAARGFSFM 120

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   +G SA+  + +A + D+T ++  LGEEK   RIAH I++ R+  P  T
Sbjct: 121 KDGPLDMRMDPSTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILEVREHTPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L++A K LK GG L+V
Sbjct: 181 TKQLADLVDEAV-PVKDKFKHPATRTFQAIRIYINSELEEIQTALQAAIKVLKPGGRLVV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F   +S      R +  ++A     +      K + P+ ++VA N R
Sbjct: 240 ISFHSLEDRIVKQFIKKQSKGEAIPRGLPLTDAQINKNLTLKAVGKAIKPSADEVARNPR 299

Query: 306 SRSAKLRAGMR 316
           SRS+ LR   R
Sbjct: 300 SRSSVLRIAQR 310


>gi|60679854|ref|YP_209998.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis NCTC 9343]
 gi|265764988|ref|ZP_06093263.1| MraW methylase [Bacteroides sp. 2_1_16]
 gi|81317074|sp|Q5LIJ0|RSMH_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|60491288|emb|CAH06036.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|263254372|gb|EEZ25806.1| MraW methylase [Bacteroides sp. 2_1_16]
          Length = 304

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               HVPVLL++ +  +N +P    +D TFG GG+SR        G  ++  D+D  A  
Sbjct: 5   ETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA-- 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E        F+  ++ F  L +   Y     VD ++ DLGVSS   D  +RGFSF+ 
Sbjct: 63  ---ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRF 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+   GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +T 
Sbjct: 120 DGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETI 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+
Sbjct: 180 GEFLEIIKP--LFGREREKKELAKIFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP ++++  N RSRS
Sbjct: 238 TYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRS 295

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 296 AKLRIAEK 303


>gi|227544880|ref|ZP_03974929.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909900|ref|ZP_07127360.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112]
 gi|154705578|gb|ABS84215.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri]
 gi|227185154|gb|EEI65225.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892548|gb|EFK85908.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112]
          Length = 318

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 179/313 (57%), Gaps = 13/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A LN  P    +DAT G GG++++  +     ++ + D+D  A++  +E
Sbjct: 5   KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKE 64

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     +++ +L +  F  L+  +    V     +++DLGVSS Q D   RGFS+Q   
Sbjct: 65  QLKTAIEQQKLTLIEDNFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA +VVN+ + + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFAS---RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F      SG V     +IP+   P  F+ I KK +V ++E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASEEELAANHRA 303

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +  E
Sbjct: 304 HSAKLRIIEKIRE 316


>gi|213612818|ref|ZP_03370644.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 304

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMR 79
           VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q    
Sbjct: 1   VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQTI-- 58

Query: 80  DYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GPLDM
Sbjct: 59  -NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 117

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    G SA++ + +A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L+ +
Sbjct: 118 RMDPTRGQSAAEWLQRAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEV 177

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFHSLE
Sbjct: 178 V-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLE 236

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+F   +S        +  + A        +      ++P +++VA N R+RS+ L
Sbjct: 237 DRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRARSSVL 296

Query: 312 RAGMRTVE 319
           R   RT  
Sbjct: 297 RIAERTNA 304


>gi|153809202|ref|ZP_01961870.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185]
 gi|149128178|gb|EDM19398.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185]
          Length = 304

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 161/310 (51%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFTFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D++N    + L  I  + GE K + ++A  IVK R     +
Sbjct: 118 RFDGDLDMRMNKRAGLTAADILNTYEEERLADIFYLYGELKNSRKLASVIVKARNGQQIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP Q ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDQAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|78221625|ref|YP_383372.1| S-adenosyl-methyltransferase MraW [Geobacter metallireducens GS-15]
 gi|123572785|sp|Q39YM7|RSMH_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78192880|gb|ABB30647.1| methyltransferase [Geobacter metallireducens GS-15]
          Length = 313

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 173/307 (56%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ V+  +V+ALL+P PG V +D T G  G++R   +       ++  DRDP A++   +
Sbjct: 6   HLSVMPAEVLALLSPRPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAASK 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L ++ F+ + +    +    +DG + DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 66  RIASFGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQLDTAERGFSFQVDAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF--QTTQD 190
           DMRM    G +A+D+VN+ +  +L RI+   GEE+ A RIA  +VK R+       T Q 
Sbjct: 126 DMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVVKAREQHGPIESTLQL 185

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +  +       +   RIHPATR+FQALRI VN+E+  L +GL +  + L  GG  +V+SF
Sbjct: 186 VDCVKGAIPRAAWEERIHPATRTFQALRIAVNDELGSLERGLVAGIERLAPGGRGVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      + +      +    + +T K V+   ++VA N R+RSA
Sbjct: 246 HSLEDRIVKTVFRRYAQGCTCPKMLPRCVCGNKPRVRILTGKPVMAGGDEVATNPRARSA 305

Query: 310 KLRAGMR 316
           K+RA  +
Sbjct: 306 KVRAVEK 312


>gi|228477291|ref|ZP_04061929.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126]
 gi|228251310|gb|EEK10481.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126]
          Length = 316

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q+D  DRGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERDRGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+QE++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEELQPKVALVNRKPILPSQEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12]
 gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 333

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 146/333 (43%), Positives = 198/333 (59%), Gaps = 5/333 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M +A       H+PVLLE ++    P      LD TFGAGGY+R   + G+  VI +D+D
Sbjct: 1   MVAAQDPPNAPHIPVLLEPILTRCAPI-TGTWLDGTFGAGGYARGLLEAGADRVIGVDQD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+    +   DY ++  L    F  L D      +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLALEMAADWAGDYGDRLRLVAGNFEAL-DAHAGGPLDGVVLDLGVSSMQLDRAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRM+  G SA+D+V + +   L  IL  LGEE+ A RIA AIV  R  AP   
Sbjct: 119 LRDGPLDMRMAQHGRSAADLVAEEDADMLADILFHLGEERAARRIARAIVAARAVAPITR 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++   +   K  + H ATRSFQALRI VN+E+  L +GL +AE AL+ GG L V
Sbjct: 179 TSQLAEIVASCLPRPKPGQSHAATRSFQALRIAVNDELGALVRGLEAAEGALEPGGWLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF   SG    A R+   +   PA F+   +K + PT+ +VA N R+
Sbjct: 239 VTFHSIEDRIVKRFFTQASGGAGRANRYAPETEDTPARFRLEPRKAIAPTEAEVAANPRA 298

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           RSA+LR G RT   ++  D + + LP L TL++
Sbjct: 299 RSARLRIGRRTAAPAMPADRAALGLPHLYTLTE 331


>gi|323127869|gb|ADX25166.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 337

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 105/327 (32%), Positives = 173/327 (52%), Gaps = 15/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLG 112
             ++   D+D  A+   Q  ++ Y  K Q +  +  F  L+   + +    +DG+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRNLKARLEALGVTKIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM     ++A DVVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +              F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K ++P+QE++A N R+ SAKLR   + 
Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKI 335


>gi|160891413|ref|ZP_02072416.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492]
 gi|156858820|gb|EDO52251.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492]
          Length = 307

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 16/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  +++ D+D  
Sbjct: 2   MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFS
Sbjct: 62  A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G++A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 117 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 177 ATIGEFLEIVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP +E++  N R
Sbjct: 235 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 292

Query: 306 SRSAKLRAGMRTVE 319
           SRSAKLR   R + 
Sbjct: 293 SRSAKLRIAERVMN 306


>gi|53711604|ref|YP_097596.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46]
 gi|253564345|ref|ZP_04841802.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5]
 gi|115311579|sp|Q64ZL4|RSMH_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52214469|dbj|BAD47062.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46]
 gi|251948121|gb|EES88403.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5]
 gi|301161374|emb|CBW20914.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis 638R]
          Length = 304

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               HVPVLL++ +  +N +P    +D TFG GG+SR        G  ++  D+D  A  
Sbjct: 5   ETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA-- 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E        F+  ++ F  L +   Y     VD ++ DLGVSS   D  +RGFSF+ 
Sbjct: 63  ---ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRF 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+   GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +T 
Sbjct: 120 DGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETI 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+
Sbjct: 180 GEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP ++++  N RSRS
Sbjct: 238 TYHSLEDRMVKNIMKTGNVEGKATQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRS 295

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 296 AKLRIAEK 303


>gi|329295550|ref|ZP_08252886.1| 16S rRNA m(4)C1402 methyltranserfase [Plautia stali symbiont]
          Length = 313

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 119/316 (37%), Positives = 174/316 (55%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGAHGQLLAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++     +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEIK---DPRFSIVHGPFSALAEYVEERGLTGKIDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPRRGQSAAEWLQSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ LI       K+   HPATRSFQA+RI++N+E+EE+   L+ A   L  GG L 
Sbjct: 179 RTKELADLI-AAATPVKDKFKHPATRSFQAIRIWLNSELEEIDIALKGALTVLAPGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVVVPTQEDVAF 302
           ++SFHSLEDRLVK+F   +S        +  + +        +  T  K+++  + +V  
Sbjct: 238 IISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTESQLKALGGRELKTLGKLIL-GEAEVKD 296

Query: 303 NRRSRSAKLRAGMRTV 318
           N R+RS+ LR   RT 
Sbjct: 297 NPRARSSVLRIAERTA 312


>gi|262273821|ref|ZP_06051634.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886]
 gi|262222236|gb|EEY73548.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886]
          Length = 317

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 170/319 (53%), Gaps = 17/319 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H+ VLL + I  L   P  + +D TFG GG++R   +       + ++DRDP A+
Sbjct: 2   SEQFSHISVLLHESIDGLALKPDGIYVDGTFGRGGHTREILRRLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
               +       +F++    FS +Q Y+  +     +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  EEAGKI---DDPRFNIIHGPFSGIQQYMEARGLSGKIDGVLLDLGVSSPQLDDPERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + GI AS  + +A+  D+  +L   GEE+ A RIA AIV  R+    +
Sbjct: 119 MRDGPLDMRMDPTSGIPASQWLAEADADDIAWVLKEFGEERFAKRIARAIVAHREDETKE 178

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +  +V  S++ + HPATR FQA+RI++N+E+EE+   ++ A + L  GG 
Sbjct: 179 PLTRTLQLANLIASVSPSRDRKKHPATRCFQAIRIYINSELEEIETAMQGALEVLAPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L ++SFHSLEDRLVK+F   +S        +  +                K + P+  +V
Sbjct: 239 LSIISFHSLEDRLVKRFIRKQSKGPDVPHGVPLTEEQIRALGQAKMKPVGKALKPSDVEV 298

Query: 301 AFNRRSRSAKLRAGMRTVE 319
           + N RSRS+ LR   +  E
Sbjct: 299 SDNTRSRSSVLRVAEKLGE 317


>gi|82703617|ref|YP_413183.1| methyltransferase [Nitrosospira multiformis ATCC 25196]
 gi|123543903|sp|Q2Y630|RSMH_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82411682|gb|ABB75791.1| methyltransferase [Nitrosospira multiformis ATCC 25196]
          Length = 316

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 167/315 (53%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
             G H  VLL++ +  L   P  + +D TFG GG+SR   +       +IA DRDP A +
Sbjct: 3   EAGKHTTVLLQEAVEALALKPDGIYVDGTFGRGGHSRLILERLGKNGRLIAFDRDPVACA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            G+       E+F +  +++S+LQ+ +       +DGV+ DLGVSS Q++   RGFSF  
Sbjct: 63  VGRSF---GDERFCMVHSSYSRLQEVLRQLNIGQIDGVLLDLGVSSPQLEEATRGFSFSM 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQT 187
            GPLDMRM    G +A+  +  A+   L  ++   GEE+ A +IA AIVK R   P   T
Sbjct: 120 EGPLDMRMDTTEGQTAAQWLASASEVQLEEVIKEYGEERFAKQIARAIVKARARQPLVTT 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +Q  + +       ++  + +PATR+FQA+RI++N E+E L+  L    + LK GG L+V
Sbjct: 180 SQLAAIVAAAIPARAREPKQNPATRTFQAIRIYLNQELERLSLALPQCVEMLKTGGRLVV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS----ITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    +      +H+         F      +  K V P   +V  N
Sbjct: 240 ISFHSLEDRIVKRFIREGANTDKLPKHLPLRADEVRRFSRASLQMVGKAVRPGVAEVECN 299

Query: 304 RRSRSAKLRAGMRTV 318
            R+RSA +R   R  
Sbjct: 300 PRARSAVMRVAERIN 314


>gi|67459296|ref|YP_246920.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2]
 gi|75536274|sp|Q4UL18|RSMH_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|67004829|gb|AAY61755.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 183/302 (60%), Gaps = 5/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++A L P  G+  LD TFGAGGYS++  +     + ALDRDP  +   +E  
Sbjct: 5   HIPVMLNEMLANLAPKDGEFYLDCTFGAGGYSKAILESCDCYITALDRDPNVIKKAEEIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           ++Y E+F   +  F+     + +K  DGVV DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  QNYGERFDFIETNFADSFAKLKEKKFDGVVLDLGVSSMQLDIADRGFSFLHDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++    +T  L+ +++ +
Sbjct: 125 GQGLSAEEFVNIAEEKELADVIYKYGDESFSRRIAKRIVEYRKTTRIDSTGKLAQIVRSS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   +  +I PAT++FQA+RI++NNE+ EL + L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 I-GFRKGKIDPATKTFQAIRIYINNELGELERFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A       +         + IT K +  + ++V  N R+RSAKLRA  
Sbjct: 244 KNFFKENSEKPVARSKYAKDDIAIDPDKWLKIITNKALATSDKEVGLNIRARSAKLRAAK 303

Query: 316 RT 317
           + 
Sbjct: 304 KI 305


>gi|157825941|ref|YP_001493661.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford]
 gi|167011835|sp|A8GP28|RSMH_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157799899|gb|ABV75153.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford]
          Length = 306

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 183/306 (59%), Gaps = 5/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            +  H+PV+L +V+ +L+P  G+  LD TFGAGGYS++  +     V+ALDRDP  +   
Sbjct: 1   MLQTHIPVMLSEVLKVLDPKGGEFYLDCTFGAGGYSKAILESCDCYVVALDRDPNVIKKA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  ++Y E+F      F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIKQNYVERFDFIATNFADSFAKLKEKQFDGIVLDLGVSSMQLDVADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA + VN    K++  I+   G E  + RIA +IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGFSAEEFVNTLEEKEIADIIYKYGNESFSRRIAKSIVEYRKTARIDSTGKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI++N+E+ EL + L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYINDELGELERFLMNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           D ++K FF   S K +A       +         + IT K + P+ +++  N R+RSAKL
Sbjct: 240 DMIIKNFFKENSEKPVARSKYAKDDIIIDPNKWLRIITNKALAPSDKEIRLNIRARSAKL 299

Query: 312 RAGMRT 317
           R   + 
Sbjct: 300 RTAKKI 305


>gi|227893331|ref|ZP_04011136.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227864746|gb|EEJ72167.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 330

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 109/325 (33%), Positives = 164/325 (50%), Gaps = 20/325 (6%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVI 62
           + K M          H  VLL + I  L P  G + +DATFG GG++R          ++
Sbjct: 12  NFKNMK-------FKHTSVLLHETIDNLKPKDGGLYVDATFGGGGHARYLLSKIDSGTLV 64

Query: 63  ALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGV 113
             D+D +A+   +    D      + +  L    FS LQ    +     G+DG+ +DLGV
Sbjct: 65  GFDQDEYAIKSAKLNFADLLEPDSEPKLKLVHDNFSNLQNDLVELGYTDGIDGIYYDLGV 124

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172
           SS Q D  DRGFS++ +  LDMRM  S    A  +VN  + K+L  IL   G+EK + +I
Sbjct: 125 SSPQFDQADRGFSYRYNARLDMRMDQSQDLDAYQLVNDLSQKELADILYQYGDEKFSRQI 184

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQG 231
           AH I++RR+  P  TT +L  +I+  +    +    HPA +SFQALR+ VN E++ L   
Sbjct: 185 AHRIIERRKDKPIVTTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNRELDVLQAS 244

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L  A K L+ GG + V++F S ED++VKK F   S   +        +    +   + +K
Sbjct: 245 LEEAIKILRPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPFVPDDLKPMLCLVNRK 304

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
            +  +  ++  N RSRSAKLR   +
Sbjct: 305 PITASTSELENNNRSRSAKLRIAKK 329


>gi|194468375|ref|ZP_03074361.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23]
 gi|194453228|gb|EDX42126.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23]
          Length = 318

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 176/313 (56%), Gaps = 13/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A LN  P    +DAT G GG++++  +     ++ + D+D  A+   +E
Sbjct: 5   KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     +++ +L +  F  ++  +    V     +++DLGVSS Q D   RGFS+Q   
Sbjct: 65  HLKTAIEQQKLTLVEDNFRNIKTELNSYNVKRVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA +VVN+   + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFAS---RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F      SG V     +IP+   P  F+ I KK +V + E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEP-DFKLINKKPIVASDEELAANHRA 303

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +  E
Sbjct: 304 HSAKLRIIEKIRE 316


>gi|312885181|ref|ZP_07744860.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367121|gb|EFP94694.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 316

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 167/313 (53%), Gaps = 18/313 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VLL + I  L+  P  + +D TFG GG+SR+          + ++DRDP A++  +
Sbjct: 6   KHISVLLNESIDGLSIKPDGIYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +FS+    FS + DY         VDGV+ DLGVSS Q+D  +RGFSF K G
Sbjct: 66  KI---QDPRFSIIHGPFSGIADYAETYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SGI  S  + +A + D+T ++   GE+K A RIA +IV  R+   + P   
Sbjct: 123 PLDMRMDPSSGIPVSQWLLEAELDDITWVIREFGEDKHARRIAKSIVAYRENADNPPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI ++   S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V
Sbjct: 183 TGQLAKLISESAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGAVNILATKGRLSV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK F    S        +  +                K + P+ ++V  N
Sbjct: 243 ISFHSLEDRMVKHFIRKESKGPQVPHGIPLTEEQIQALGSANLKAVGKAIKPSSKEVDEN 302

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   +
Sbjct: 303 TRSRSSVLRIAEK 315


>gi|256830379|ref|YP_003159107.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM
           4028]
 gi|256579555|gb|ACU90691.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM
           4028]
          Length = 320

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 177/312 (56%), Gaps = 11/312 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
            DH+PV+LE+V+  + P PG   +DAT G GG++    ++    + ++ LDRD  A++  
Sbjct: 5   SDHIPVMLEEVMHWIAPRPGGFYMDATLGLGGHAARLMELTNGQARLLGLDRDEQALAKA 64

Query: 75  QETMRDYKEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E   L       FS+    V    +DGV+ DLGVSS+Q+D  +RGFSF + G
Sbjct: 65  GERLAQYGENVQLAHTSFQHFSRALREVGWDKLDGVIADLGVSSLQLDSPERGFSFLQDG 124

Query: 132 PLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM     G  AS +VN A+ + L ++L   GEE  A RIA AIVK R++A   +T 
Sbjct: 125 PLDMRMDPGSGGEPASVIVNGASFERLRQLLWDYGEEPMAGRIAGAIVKIRETARIDSTL 184

Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L+ ++       +   +R HPAT++FQALR+ VN E+ E+   L      L+ G  + V
Sbjct: 185 ELARIVAAAYPAKRRALSRNHPATKTFQALRLEVNQELREVEFFLERIVDHLRPGARICV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+ F   S   +  R + +    H    +   +K ++PT++++  N RS
Sbjct: 245 ISFHSLEDRIVKRAFRKESSACLCPREYPVCQCGHTQKLRLPFRKPLIPTEDEMRANSRS 304

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   R  
Sbjct: 305 RSAKLRVAERVD 316


>gi|307564714|ref|ZP_07627244.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A]
 gi|307346642|gb|EFN91949.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A]
          Length = 318

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 167/319 (52%), Gaps = 15/319 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           I      HVPVLL++ +  LN   G + +D TFG GG+SR      S   ++ + D+D  
Sbjct: 2   IKTAESYHVPVLLKESVDGLNIRKGGIYVDVTFGGGGHSREILSHLSGDAHLYSFDQDLD 61

Query: 70  A---VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           A   +    E+ ++  ++F+  ++ F  L++++       +DG++ DLGVSS   D  +R
Sbjct: 62  AEQNIKYLTESDKELSKKFTFVRSNFRYLKNWMRYYGVDKIDGLIADLGVSSHHFDDENR 121

Query: 124 GFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           GFSF+             SG  A DV+N    +DL R+  + GE KQ+ RIA AIVK R 
Sbjct: 122 GFSFRFDDAPLDMRMNKESGKQAFDVLNDYKEEDLARLFYVYGELKQSKRIAAAIVKGRA 181

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           +   +TT D   ++    +F +        + FQALRI VN E++ L + L SA + L  
Sbjct: 182 NKAIRTTTDFLKIVNP--FFMRVREKKDMAKLFQALRIEVNQEMQALTKMLTSAIELLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+++HSLEDRLVK F  S + +    +        P  F+ +  KV++ T E++ 
Sbjct: 240 GGRLSVITYHSLEDRLVKNFMKSGNAEGKISQDFFGRIKTP--FKLVNNKVIIATDEEIE 297

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSAKLR   R  E 
Sbjct: 298 RNPRSRSAKLRIAERKHEE 316


>gi|295692684|ref|YP_003601294.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Lactobacillus crispatus ST1]
 gi|295030790|emb|CBL50269.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus crispatus ST1]
          Length = 315

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 159/314 (50%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG++R          ++  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLVGFDQDEYAIKS 60

Query: 74  GQETMR-----DYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +         D + +  L    FS L+          G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AKLNFANLLQPDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  
Sbjct: 121 FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I+  +    +    HPA +SFQALR+ VN+E++ L   L  A K L+ G
Sbjct: 181 PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VK+ F   S   +        +      + +  K +V +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|260102637|ref|ZP_05752874.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus helveticus DSM 20075]
 gi|260083561|gb|EEW67681.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus helveticus DSM 20075]
          Length = 330

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 161/314 (51%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+  
Sbjct: 16  MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKS 75

Query: 74  GQETMRD-----YKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +    D      + +  L    FS L+          G+DG+ +DLGVSS Q D  DRG
Sbjct: 76  AELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 135

Query: 125 FSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  
Sbjct: 136 FSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDK 195

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQALR+ VN+E++ L   L  A + L+ G
Sbjct: 196 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPG 255

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +        +      +   +K +  +  ++  
Sbjct: 256 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELEN 315

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 316 NNRSHSAKLRVAEK 329


>gi|161507311|ref|YP_001577265.1| cell division protein MraW [Lactobacillus helveticus DPC 4571]
 gi|263458154|sp|A8YUN6|RSMH_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160348300|gb|ABX26974.1| Cell division protein MraW [Lactobacillus helveticus DPC 4571]
          Length = 315

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 161/314 (51%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKS 60

Query: 74  GQETMRD-----YKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +    D      + +  L    FS L+          G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  
Sbjct: 121 FSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +    +    HPA +SFQALR+ VN+E++ L   L  A + L+ G
Sbjct: 181 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +        +      +   +K +  +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELEN 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|189464532|ref|ZP_03013317.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM
           17393]
 gi|189438322|gb|EDV07307.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM
           17393]
          Length = 304

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 159/310 (51%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           +  +  HVPVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  A
Sbjct: 3   NEELTYHVPVLLMPSVDGMNIRPDGTYIDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVDNPHFTFVRSNFRYLHNFLRYHNIEEVDSILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G +A+D++N  + + L  I  + GE K + ++A  IVK R      
Sbjct: 118 RFDGALDMRMNKRAGDTAADIINNYDEERLADIFYLYGELKNSRKLASVIVKARAGQKIT 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP   ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDDAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|27904707|ref|NP_777833.1| hypothetical protein bbp206 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839463|sp|P59522|RSMH_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27904104|gb|AAO26938.1| hypothetical protein bbp_206 [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 315

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 162/314 (51%), Gaps = 18/314 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H PVLL + I  L+     + +DATFG GG+S+   K       + ++D+DP+A+    +
Sbjct: 7   HTPVLLNETIQNLDIKNDGIYIDATFGYGGHSKEILKHLGKNGKLYSIDQDPYAIKIANK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F++    FS +  Y     +    +G++ DLG+SSMQI+  +RGFSF   GP
Sbjct: 67  LKNDTR--FNIIHGKFSNILKYSNKNKIRGKVNGILLDLGMSSMQINNPNRGFSFISDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ + GI A   + + N+  L  +L   GEE  + +IA+ I+   +      T +L
Sbjct: 125 LDMRMNPNTGIPAYMWLKKTNLTTLYHVLKKYGEEPFSKKIAYNIIAYNKKKTITRTLEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S +I  ++   K  R HPA R FQA+RI++N+EI EL Q L      L  GG L+++SFH
Sbjct: 185 SKIITNSI-PIKKYRKHPARRVFQAIRIYINHEIYELQQALEHVLNILIPGGKLLILSFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR VKKF    S        +  +            + ITK  + P+  ++  N R+
Sbjct: 244 SLEDRTVKKFMIKYSKPPFVPPGLAITETQLKSLANKQLKIITK--IFPSTIEIRKNPRA 301

Query: 307 RSAKLRAGMRTVER 320
            SA LR   +    
Sbjct: 302 HSAILRVAQKNNNE 315


>gi|303235618|ref|ZP_07322225.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN]
 gi|302484065|gb|EFL47053.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN]
          Length = 310

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      HVPVLL++ I  LN  P  V +D TFG GG+S+          ++ + D+D  
Sbjct: 2   IKTAETYHVPVLLKESIDGLNINPDGVYVDVTFGGGGHSKEILSRLSKKGHLYSFDQDAD 61

Query: 70  AVSCGQETMRDYK-EQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           A    +      K E F+  ++ F  L++   Y   + +DG++ DLGVSS   D  +RGF
Sbjct: 62  AEQNIKGINNIEKLENFTFVRSNFRYLKNWLRYYGVEQIDGLLGDLGVSSHHFDDEERGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM+   G +A+D++ Q   +DL  +  + GE K + +IA AIV  R++ P
Sbjct: 122 SFRFDAPLDMRMNKRAGKTAADILLQYEEEDLANMFYLYGELKNSRKIAAAIVNSRKTKP 181

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+D  S+++    F +        + FQALRI VN E+  L + L  A + LK  G 
Sbjct: 182 ILTTKDFQSVVEP--LFKREREKKEMAKLFQALRIEVNQEMAALKEMLIGASEVLKPNGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+++HSLEDR+VK    + + +    +        P  F+ I  KV+VP+Q +   N 
Sbjct: 240 LSVITYHSLEDRIVKNIMKTGNIEGKVEQDFFGKINSP--FKLINNKVIVPSQSEQKENP 297

Query: 305 RSRSAKLRAGMRT 317
           RSRSAKLR   + 
Sbjct: 298 RSRSAKLRIAEKI 310


>gi|296532828|ref|ZP_06895500.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC
           49957]
 gi|296266841|gb|EFH12794.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC
           49957]
          Length = 311

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 181/310 (58%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75
           +  H+PV+L +V+  L P  G   +D TFG GGY+R+   +    + A DRDP A++ GQ
Sbjct: 1   MSGHLPVMLAEVLDNLAPRAGGAYVDGTFGGGGYARAILGRAACTLHAFDRDPDAIARGQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + +   + +L +  F ++++ + ++    VDGVV DLGVSS Q+D  +RGFSF+  GP
Sbjct: 61  ALLAESAGRLTLIERRFGEMREALAERGVTTVDGVVLDLGVSSFQLDQAERGFSFRFDGP 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  +G SA+D+VN     +L  IL  LGEE+ + RIA  +V  R+ AP +TT  L 
Sbjct: 121 LDMRMEKAGPSAADLVNTLPEAELADILWQLGEERHSRRIARTLVAARREAPIETTGRLR 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           SLI   V     + I  ATRSFQALR+ VN+E+ E+ +GL +A   L  GG L+VV+FHS
Sbjct: 181 SLIH-AVMPRDPSGIDSATRSFQALRLKVNDELGEVERGLEAAASLLAPGGRLVVVAFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           LEDR+VK+F    +G+        PS          F+ +    + P   ++A N R+RS
Sbjct: 240 LEDRIVKRFMQQAAGRGPGASRHDPSALLGGGQKPRFRLVANNALRPGAAELAANPRARS 299

Query: 309 AKLRAGMRTV 318
           A+LR   +  
Sbjct: 300 ARLRTLEKLE 309


>gi|331002506|ref|ZP_08326024.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410322|gb|EGG89756.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 311

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 164/309 (53%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
              +H  VLL++VI  LN       +D T G GG++    K      +I +D+D  A++ 
Sbjct: 1   MTFNHKSVLLDEVIESLNIKADGYYVDGTLGGGGHALEVVKRLKTGKLIGIDQDMDAINA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
             + + DY +   + +  +  +++ +  + ++    +  DLGVSS Q+D  +RGF+++  
Sbjct: 61  ATQRLIDYSKSVIIIRDNYVNIENILKKENIEKVDGIYIDLGVSSYQLDNAERGFTYRFD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       ASD+VN+ +  +L  I+   GE++ A  IA  IV+ R     +TT 
Sbjct: 121 APLDMRMDDRNELKASDIVNEYSESELFHIIRDYGEDRFAKNIAKHIVEYRNKKRIETTF 180

Query: 190 DLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+ ++         HPA R+FQA+RI +N E+E L   +      LK GG L V+
Sbjct: 181 ELVDIIKASIPMKIQVTGGHPAKRTFQAIRIELNKELEVLTDSINVMIDLLKPGGRLSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+ F       +  +        + +  + IT+K ++P +E++  N R++
Sbjct: 241 TFHSLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAILPGEEELEENSRAK 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVFEK 309


>gi|294646197|ref|ZP_06723851.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a]
 gi|292638415|gb|EFF56779.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a]
          Length = 309

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 8   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 68  -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +
Sbjct: 123 RFDGALDMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIR 182

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 183 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 298

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 299 RSAKLRIAEK 308


>gi|116628390|ref|YP_821009.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus
           LMD-9]
 gi|68565436|sp|Q5LY91|RSMH_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122267015|sp|Q03J09|RSMH_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116101667|gb|ABJ66813.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus thermophilus
           LMD-9]
 gi|312279018|gb|ADQ63675.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus thermophilus ND03]
          Length = 316

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+QE++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|119773487|ref|YP_926227.1| S-adenosyl-methyltransferase MraW [Shewanella amazonensis SB2B]
 gi|262826482|sp|A1S2F1|RSMH_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119765987|gb|ABL98557.1| methyltransferase [Shewanella amazonensis SB2B]
          Length = 313

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR           +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVDGLNIRADGIYIDGTFGRGGHSREVLSRLGVDGRLIAIDRDPQAIKAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL +YV +      +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FANDSR--FQIVHGGFGQLANYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A+  + +A ++D+  +    GEE+ A  IA  I   R+  PF  T+ L
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEERNARHIARCIAADREKTPFTRTKQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A K L   G L ++SFH
Sbjct: 185 ADLIARVAKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPHGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  + A    +       K + P+  ++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGEELPHGLPVTEAQLNKSRTLMPVGKAMKPSDVEIEQNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|313890654|ref|ZP_07824281.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120965|gb|EFR44077.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 316

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L   P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLQVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131
            +  +  K   +  +  F  L+  +   GVD +   ++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDFIDGILYDLGVSSPQLDERERGFSYRQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A  VVN  +  DL RI    GE++ + ++A  I + R   P +TT +
Sbjct: 127 PLDMRMDSDASLTAYQVVNDYSFNDLVRIFFRYGEDRFSKQVARKIEQARAIKPIETTAE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + L+ A   L   G + V++
Sbjct: 187 LAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDVLALEGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +              F+ +++K ++P++E++A N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASVVDVPKGLPFIPEEMQPKFELVSRKPILPSKEELAENNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|320161732|ref|YP_004174957.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1]
 gi|319995586|dbj|BAJ64357.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1]
          Length = 312

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 173/314 (55%), Gaps = 12/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H PVL +++I  L P      +DAT GAGG++    +       ++ LD DP 
Sbjct: 1   MSEASVPHRPVLYQEIILALRPHSPGRYVDATVGAGGHAAGILEASSPKGELLGLDPDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   + +  + E+  L QA++  L++    +  + VDG+VFDLGVSSMQ+D  +RGFS
Sbjct: 61  ALALASQRLSIFGERVHLVQASYVTLKEQLAVLGWQEVDGIVFDLGVSSMQLDTPERGFS 120

Query: 127 FQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   G LDMR      + + D+VN    ++L RIL   GEE+ A RIA AIV+ R     
Sbjct: 121 FSAEGKLDMRFDPCQDTTAEDLVNHLPEEELARILWEYGEERYARRIARAIVQARPLHTT 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +   +L +     +   K  RIHPATR+FQALRI VN E+E +   L  A + LKAGG L
Sbjct: 181 RELAELVAR----IVGGKRERIHPATRTFQALRIAVNRELEAIETVLPQAVECLKAGGRL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDRLVK FF   S   +      + +  H A  + +T+  +  + E+V  N 
Sbjct: 237 AVISFHSLEDRLVKHFFRRESRDCLCPPEQPVCTCGHKASLREVTRHPIEASDEEVRENP 296

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA+LR   +  
Sbjct: 297 RARSARLRVAEKIA 310


>gi|295086283|emb|CBK67806.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens XB1A]
          Length = 304

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   GI+A+D+VN    + L  +  + GE K + ++A  IVK R     +
Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKTRSGQNIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|260775374|ref|ZP_05884271.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608555|gb|EEX34720.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 316

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 165/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLL + I  L   P    +D TFG GG+SR           + ++DRDP A++
Sbjct: 3   EEFKHISVLLHESIDGLAIKPDGTYIDGTFGRGGHSRQILSQLGEQGRLFSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +F++    FS +  Y  ++     VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQTI---DDPRFTIIHGPFSGMAKYAEERGLVGQVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R++     
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A              K + P++++V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEAQIKALGSANLKPIGKAIKPSKQEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DINTRSRSSVLRIAEK 315


>gi|188585922|ref|YP_001917467.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|262825152|sp|B2A2G4|RSMH_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|179350609|gb|ACB84879.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 315

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 173/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
              +H PV++EK I LL P   +VI+D T G  G+S            ++ +D+DP A  
Sbjct: 1   MNFNHEPVMIEKTIELLKPESAQVIVDGTMGGAGHSLRIINSLPPEGILVGIDQDPDAYE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            G+  +  Y  +  +F   F  ++          VDG++ DLGVSS Q+D  DRGF++Q+
Sbjct: 61  AGKSLLEAYGNKAKVFNDNFVNIKHICERIGIHYVDGILLDLGVSSYQLDNKDRGFTYQE 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + PLDMRM     I+AS+VVN  + + L  I+   GEEK A RIA  IV+ RQ     TT
Sbjct: 121 NAPLDMRMDKSQKITASEVVNTYSEQKLAEIIREYGEEKWAQRIAQFIVQARQDQEINTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           Q+L  +I+  +    + +  HPA R+FQALRI VN E++ L   ++   + L+  G  +V
Sbjct: 181 QELVKVIKAAIPKGARKSGPHPAKRTFQALRIHVNGELDSLRTAIQEGIRLLRGKGRFVV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK+ F   +   +   +  I      A  + +TKK ++P+Q ++  N R+
Sbjct: 241 ITFHSLEDRIVKQEFKKLAQTCVCPTKLPICQCKGEATVKLLTKKPLLPSQGEIEINPRA 300

Query: 307 RSAKLRAGMR 316
           RSAKLRA  R
Sbjct: 301 RSAKLRAVER 310


>gi|312863799|ref|ZP_07724037.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis
           F0396]
 gi|311101335|gb|EFQ59540.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis
           F0396]
          Length = 316

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLRSNLEALGVFEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+QE++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|27364047|ref|NP_759575.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio vulnificus CMCP6]
 gi|37678790|ref|NP_933399.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus YJ016]
 gi|320157431|ref|YP_004189810.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O]
 gi|30173038|sp|Q8DEK2|RSMH_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42559438|sp|Q7MNV9|RSMH_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27360164|gb|AAO09102.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus CMCP6]
 gi|37197531|dbj|BAC93370.1| predicted S-adenosylmethionine-dependent methyltransferase [Vibrio
           vulnificus YJ016]
 gi|319932743|gb|ADV87607.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 167/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   DTFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGEHGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---DDPRFTIIHGPFSGMANYAEQYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---AP 184
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R+     P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAHREDETKEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTSQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A              K ++PT +++
Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTEAQIKALGSANMKTVGKAIMPTAQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 ELNPRSRSSVLRIAEK 315


>gi|294142812|ref|YP_003558790.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12]
 gi|20139165|sp|Q9F1N8|RSMH_SHEVD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|11761327|dbj|BAB19194.1| MraW [Shewanella violacea]
 gi|293329281|dbj|BAJ04012.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12]
          Length = 313

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 122/316 (38%), Positives = 174/316 (55%), Gaps = 14/316 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +A LN  P  + +D TFG GG+SR   K       +IA+DRDP 
Sbjct: 1   MSQEFS-HLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSREVLKHLGDNGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++   D +  FS+    F QL DYV D      VDGV+ D GVSS Q+D  +RGF
Sbjct: 60  AIIAAEQFADDAR--FSIVHGGFGQLADYVEDLGLKGKVDGVLLDFGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A++ + +  ++D+  +    GEEK +  IA  I   R   P
Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAEWIARTEIEDMAWVFKTYGEEKNSRHIARCIAADRDKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T++L+ LI + +  SK    HPATR FQA+RI++N+E+E++ Q L  A K L   G 
Sbjct: 178 FLRTKELADLIAR-ICKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALKVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L V+SFHSLEDR+VK+F    S  +     +  + A     + +    K   P+ E+V  
Sbjct: 237 LSVISFHSLEDRIVKRFIRRHSQGMSVPHGLPITEAEINKTRLLKAVGKATKPSTEEVEM 296

Query: 303 NRRSRSAKLRAGMRTV 318
           N+RSRS+ LR   R  
Sbjct: 297 NKRSRSSVLRVAERLE 312


>gi|307824823|ref|ZP_07655046.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum
           SV96]
 gi|307734181|gb|EFO05035.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum
           SV96]
          Length = 308

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 178/310 (57%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV--SC 73
           +H+PV+  + +  L      V LD TFG GG+S+    +      ++A DRD  A+    
Sbjct: 2   EHLPVMFAEALQQLAIKEDGVYLDCTFGRGGHSQGILNLLGPSGRLLAFDRDLDAINSDY 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            Q  + D +  F L    FS L++ V  +     VDG++ DLGVSS Q+D  +RGFSF +
Sbjct: 62  AQAMLEDKR--FKLKHTHFSALENIVVSEGLAGKVDGILMDLGVSSPQLDNPERGFSFLR 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG++A   +   + K L ++L   GEE+ A RIA AIV++R  +P  TT
Sbjct: 120 DGPLDMRMDGNSGVTAEQWLAGVDEKALVKVLFEYGEERFARRIARAIVEKRAVSPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++L+ LI+  V   + ++ HPATRSFQA+RI +N+E++EL   L+ + + LK GG L+V+
Sbjct: 180 RELAKLIEDVVPGKEKHK-HPATRSFQAIRIEINSELDELKAVLQQSARILKPGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  + SG       +       A     IT K +    +++A N R+R
Sbjct: 239 SFHSLEDRIVKRFIRAESGAKYNPGKLPIKEIDIAKGILKITGKALKAGAQEIAQNPRAR 298

Query: 308 SAKLRAGMRT 317
           SA +R   R 
Sbjct: 299 SAVMRVAERV 308


>gi|254449029|ref|ZP_05062483.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015]
 gi|198261423|gb|EDY85714.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015]
          Length = 309

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/316 (38%), Positives = 171/316 (54%), Gaps = 17/316 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++A+     +HVPVLL + I  L      V LD TFG GG+S +          + A+D
Sbjct: 1   MAAAL-----EHVPVLLAEAIEGLRIEENGVYLDGTFGRGGHSAAILSQLGVDGQLHAID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RD  AV   Q+   +   +FS+    FSQL  Y   +     ++GV+ D+GVSS QID  
Sbjct: 56  RDRAAVDVAQQRFAE-DARFSIHHGEFSQLDQYCEQRGLAGRLNGVLLDIGVSSPQIDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSFQ  GPLDMRM    G +A+  +  A   ++ R+L   GEE+ A RIA AI +  
Sbjct: 115 GRGFSFQFDGPLDMRMDQTRGETAAQWLVSAEASEIARVLKEFGEERNAKRIASAIKRTL 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q    +TTQ L ++I+        ++ HPATRSFQALRI VN+E+  L + L +A + L 
Sbjct: 175 QERSIETTQGLVAVIESATRVRDRHK-HPATRSFQALRIQVNDEMGALRRALDAAVRMLA 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L V+SFHSLEDR+VK+F    S      R +     H    +S+  K +   + ++
Sbjct: 234 PGGRLAVISFHSLEDRMVKRFIRDESTPREVARGLPQKTDH-IRLKSV-GKAIKAGESEL 291

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSA LR   R
Sbjct: 292 KKNPRARSAVLRVAER 307


>gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 339

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 153/325 (47%), Positives = 200/325 (61%), Gaps = 4/325 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             HVPVLL +VI  L P  G+ I+D TFGAGGY+R+    G+ VIA+DRDP A+   +  
Sbjct: 16  TPHVPVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGAEVIAIDRDPTAIETARAL 75

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +   + +     F  +   + D+   +DG+V D+GVSSMQID  +RGFSFQK GPLDM
Sbjct: 76  AGESNGRLTPVAGRFGAMGSLLSDRQGAIDGIVLDVGVSSMQIDKAERGFSFQKDGPLDM 135

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVVN  +V DL RI   LG+E+ A R A AIV RR++ PF  T DL+ ++
Sbjct: 136 RMGNHGATAADVVNTLSVGDLARIFNFLGDERHAGRAARAIVARREAKPFVRTLDLAGVV 195

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V   K+ +I PATR FQALRIFVN+E+ ELA+ L +AE  LK GG L+VVSFHSLED
Sbjct: 196 GKAVGRGKHEKIDPATRCFQALRIFVNDELGELARALVAAEGLLKPGGRLVVVSFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+FF  R+G     RH+         F +   K V  ++ + A N R+RSAKLR G 
Sbjct: 256 RIVKRFFLDRAGTQGGSRHLPDVMPEVPTFSARN-KAVAASEREAADNPRARSAKLRFGT 314

Query: 316 RTVERSIEDD-SFVHLPRLPTLSQF 339
           R        D +F  LP L  LS+ 
Sbjct: 315 RLEAAPRSGDLAFASLPDLADLSRI 339


>gi|170718775|ref|YP_001783958.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336]
 gi|263456057|sp|B0US59|RSMH_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168826904|gb|ACA32275.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336]
          Length = 321

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           MS     +  +H  VLL + +  L      + +D TFG GG+SR      S    +IA+D
Sbjct: 1   MSMQDTFSSPEHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A+   Q        +F +   +FS + D          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPQAIQVAQNI---QDPRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA++ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSATEWLRQVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA     + L+  +Q           K+   HPATRSFQA+RIF+N+E++EL + L  A
Sbjct: 178 KSAVQSGAEPLNRTLQLAELIAQSVPFKDKYKHPATRSFQAIRIFINSELDELEKVLNGA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q +    K +
Sbjct: 238 LNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPVGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
           +PT++++A N RSRSA LR   R 
Sbjct: 298 MPTEQEMAANVRSRSAVLRIAERI 321


>gi|110833451|ref|YP_692310.1| methyltransferase [Alcanivorax borkumensis SK2]
 gi|123345754|sp|Q0VS10|RSMH_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110646562|emb|CAL16038.1| methyltransferase [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 167/313 (53%), Gaps = 8/313 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
               T   H PV+LE+V+ +         +D TFG GG+SR+          +I +DRDP
Sbjct: 2   TTEDTQYAHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLSRLGENGRLIGIDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFS 126
            A++ GQ+ +     +F +    F  L   V    + +DG++ DLGVSS Q+D   RGFS
Sbjct: 62  QAIAAGQQ-LAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM    G S ++ ++ A  KD+  +L   GEE+++  IA  I + R+  P 
Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSYAAEKDIANVLYRYGEERKSRWIAKRICETRKEQPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+ LI+  +  ++  + HPATRSFQALRI +N E++ L Q L  + + L  GG L
Sbjct: 181 TRTLQLADLIESVLGRNEQGK-HPATRSFQALRIHINGELDALDQVLEQSLETLAIGGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++SFHSLEDR+VK F    SG+    R  +P             KV+  ++ ++  N R
Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGDELPQRLEPVGKVMRASKAELKVNVR 299

Query: 306 SRSAKLRAGMRTV 318
           SRSA LR   +  
Sbjct: 300 SRSAVLRIAEKVA 312


>gi|68565437|sp|Q5M2U6|RSMH_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVNGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+QE++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|269123556|ref|YP_003306133.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM
           12112]
 gi|268314882|gb|ACZ01256.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM
           12112]
          Length = 309

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 171/308 (55%), Gaps = 10/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H+PVL ++V+  +      + +D T G GG+S          S +IA+D+D  A+  
Sbjct: 1   MEYHLPVLYDEVLENIIDKKDLIYMDCTLGGGGHSEGILSNSTDNSKLIAIDQDENAIKY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E ++ +  + S+F+  F  L           VD ++ D+GVSS Q+D   RGFS++K 
Sbjct: 61  ASERLKKFGNKVSIFKNNFENLDIVAYLAGFDKVDRILMDIGVSSKQLDDDKRGFSYRKE 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   SA +V+N    +++  IL   GEE ++ RIA  IV+ R++   +TT 
Sbjct: 121 AKLDMRMDESQKLSAYEVINNYKEEEIADILYKYGEEPKSRRIAKYIVEYRKNKSIETTI 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++ K +   K+ + HPA R+FQA+RI+VN E+E L + L  + + L  GG L+V++
Sbjct: 181 ELADIVIKAI--GKSMKKHPAKRTFQAIRIYVNRELEVLEKALDKSIELLNPGGRLLVIT 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F              I    + +  + +T+K +V  ++++  N R+ S
Sbjct: 239 FHSLEDRIVKEKFRKYENPCTCPYDLPICKCGNKSKGKVLTRKPIVSKEKELEANNRAHS 298

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 299 AKLRVFIK 306


>gi|238797714|ref|ZP_04641209.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           mollaretii ATCC 43969]
 gi|238718466|gb|EEQ10287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           mollaretii ATCC 43969]
          Length = 320

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/321 (37%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           +  I      H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NKKIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   +        +FS+    FS+L  YV +      +DG++ DLGVSS Q+D  +
Sbjct: 64  DPQAIEAAKSI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQE 298
            G L V+SFHSLEDR+VK F   RS        +  + A        T K +   +P   
Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADA 299

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +VA N R+RS+ LR   R  E
Sbjct: 300 EVAENPRARSSVLRFAERIKE 320


>gi|227877318|ref|ZP_03995391.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842880|ref|ZP_05548368.1| methylase MraW [Lactobacillus crispatus 125-2-CHN]
 gi|256848746|ref|ZP_05554180.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US]
 gi|262045846|ref|ZP_06018810.1| methylase MraW [Lactobacillus crispatus MV-3A-US]
 gi|312977602|ref|ZP_07789349.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05]
 gi|227863174|gb|EEJ70620.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614300|gb|EEU19501.1| methylase MraW [Lactobacillus crispatus 125-2-CHN]
 gi|256714285|gb|EEU29272.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US]
 gi|260573805|gb|EEX30361.1| methylase MraW [Lactobacillus crispatus MV-3A-US]
 gi|310895341|gb|EFQ44408.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05]
          Length = 315

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 159/314 (50%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKS 60

Query: 74  GQETMR-----DYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +         D + +  L    FS L+          G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AKLNFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  
Sbjct: 121 FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I+  +    +    HPA +SFQALR+ VN+E++ L   L  A K L+ G
Sbjct: 181 PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VK+ F   S   +        +      + +  K +V +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|171778125|ref|ZP_02919382.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283107|gb|EDT48531.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 339

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q 
Sbjct: 30  HITVLLHETVDMLDIEPDGIYVDATLGGAGHSEYLLSKLGPNGHLYAFDQDQTAIDNAQI 89

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K Q +  +  F  L   +       +DG+++DLGVSS Q+D  +RGFS++K  
Sbjct: 90  RLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 149

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A DVVN  +  DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 150 PLDMRMNREQDLTAYDVVNTYDYYDLVRIFYKYGEDKFSKQIARKIEQARQEKPIETTTE 209

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 210 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRISVIT 269

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +        +        + +K ++P QE++  N RS SA
Sbjct: 270 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLTLVNRKPILPRQEELEANNRSHSA 329

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 330 KLRVARKV 337


>gi|317496841|ref|ZP_07955171.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895853|gb|EFV18005.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 312

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 172/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++
Sbjct: 1   MEFKHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + +  +K++ ++ +  +  +   + D   + VDG++ DLGVSS Q+D  +RGF++++
Sbjct: 61  ASTKRLESFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDDKERGFTYRE 120

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN+ +  +L  I+   GEEK A  IA  IV +R+ +P +TT
Sbjct: 121 DVPLDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  +    +    HPA ++FQA+RI  N E++ L   + +    L  GG L +
Sbjct: 181 GQLIEVIKSAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK+ F           +       + +  + +T+K ++P +E++ +N+R+
Sbjct: 241 ITFHSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRA 300

Query: 307 RSAKLRAGMR 316
           +S+KLR   R
Sbjct: 301 KSSKLRVFER 310


>gi|238927330|ref|ZP_04659090.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Selenomonas flueggei ATCC 43531]
 gi|238884612|gb|EEQ48250.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Selenomonas flueggei ATCC 43531]
          Length = 312

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 164/312 (52%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
           T   HV VLLE+ +  LN  P  + +DAT G  G++R           +I +D+D  A++
Sbjct: 2   TEFHHVSVLLEETVGALNVMPDGIYVDATLGGAGHARRIAAHLSEHGRLIGIDQDETAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E + D + Q SL +  F  L   +       VDGV+FDLGVSS QID  +RGFS+ +
Sbjct: 62  AAHERLADVRCQVSLVRDNFRNLSAILAAEGVFSVDGVLFDLGVSSPQIDTPERGFSYMQ 121

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      SA DVVN    + LT I    GEE+ A RIA  I K RQ+ P  TT
Sbjct: 122 DAPLDMRMDQRARLSAYDVVNAYTAEQLTEIFYTYGEERWAKRIAAFIEKERQAHPIATT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            DL ++I + V    +    HPA R FQA+RI VN+E+  L   L +A  AL+ GG L V
Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQAIRIEVNDELGILEGALSAAVNALRIGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK      +   +   H  +    H    + +  K     +E+ A N R+
Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPVCVCGHTPEVRLV-GKAKAAGKEECAANTRA 300

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 301 RSAKLRVAEKIK 312


>gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis
           HTCC2594]
 gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 315

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 136/311 (43%), Positives = 200/311 (64%), Gaps = 10/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77
           HVPVLL++V+A L+P PG V++DATFGAGGY+R+    G+ V A DRDP A++ G +   
Sbjct: 7   HVPVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGATVHAFDRDPDAIAAGSQWPE 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++   +  L    FS++   + +     VDGV  D+GVSSMQ+D   RGF+F   GPLD
Sbjct: 67  TKEEPPRLVLHPRRFSEMVHALAEAGVAQVDGVAMDIGVSSMQLDQAQRGFAFSADGPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D +N A  +++  +L   GEE+Q+ R+A AI+  R   P +TT DL+ +
Sbjct: 127 MRMSQHGPSAADFLNSAEAEEIADVLYQYGEERQSRRVARAIIAAR---PLETTGDLARV 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++K + +       PATR+FQA+RI VN E++EL +GL +AE  L++GG L VVSFHSLE
Sbjct: 184 VRKALGYRVGAPKDPATRTFQAVRIHVNGELDELREGLHAAEHLLRSGGRLAVVSFHSLE 243

Query: 255 DRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F  S SGK     R++  ++  PA+F  I+ K + P++ ++A N R+RS+ LR 
Sbjct: 244 DRIVKRFLQSASGKAGGTSRYLPQTDVSPAIFSDIS-KAIRPSEAEIARNPRARSSTLRH 302

Query: 314 GMRTVERSIED 324
             RT     ++
Sbjct: 303 ATRTDAPPRKE 313


>gi|222153542|ref|YP_002562719.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J]
 gi|262825652|sp|B9DV78|RSMH_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222114355|emb|CAR43080.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J]
          Length = 316

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSKLNDNGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  +   +  +A F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLKSYVDRGMVTFIKANFRHLKSELNALGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A  VVN    +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDSDAALTAYHVVNDYPFQDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTAE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMTMLALNGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +              F+ +T+K ++P+QE++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGIPFIPEDMQPKFELVTRKPILPSQEELLANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKV 314


>gi|238784576|ref|ZP_04628583.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           bercovieri ATCC 43970]
 gi|238714542|gb|EEQ06547.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           bercovieri ATCC 43970]
          Length = 320

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/321 (37%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           +  I      H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NKKIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   +        +FS+    FS+L  YV +      +DG++ DLGVSS Q+D  +
Sbjct: 64  DPQAIEAAKSI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPTRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAD 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQE 298
            G L V+SFHSLEDR+VK F   RS        +  + A        T K +   +P   
Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADA 299

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +VA N R+RS+ LR   R  E
Sbjct: 300 EVAENPRARSSVLRFAERIKE 320


>gi|254509146|ref|ZP_05121246.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16]
 gi|219547943|gb|EED24968.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16]
          Length = 316

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 165/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGDNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAAKI---DDPRFTIIHGPFSGMAEYAAEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R++     
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++ +V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSANMKPIGKAIKPSKNEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EVNARSRSSVLRIAEK 315


>gi|322373647|ref|ZP_08048183.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150]
 gi|321278689|gb|EFX55758.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150]
          Length = 316

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQG 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ++A +VVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+QE++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|332557530|ref|ZP_08411852.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N]
 gi|332275242|gb|EGJ20557.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N]
          Length = 331

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 144/329 (43%), Positives = 199/329 (60%), Gaps = 5/329 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68
            +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP
Sbjct: 1   MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQ
Sbjct: 60  LALKMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           K GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T
Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV
Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRHGGRLAVV 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+F   RS G+    R+   + A    F    ++ + P + ++A N R+R
Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRAR 298

Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           SA+LR G+RT   + + D   +  P +P 
Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327


>gi|163751816|ref|ZP_02159032.1| S-adenosyl-methyltransferase [Shewanella benthica KT99]
 gi|161328301|gb|EDP99462.1| S-adenosyl-methyltransferase [Shewanella benthica KT99]
          Length = 313

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 170/316 (53%), Gaps = 14/316 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+ VLL + +A LN     + +D TFG GG+SR   K       +IA+DRDP 
Sbjct: 1   MSQEFS-HLSVLLSETVAGLNIKQDGIYIDGTFGRGGHSREVLKHLGGNGRLIAIDRDPQ 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   ++   D +  FS+    F QL  YV D      +DGV+ D GVSS Q+D  +RGF
Sbjct: 60  AIEAAKQFADDSR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G +A++ + +A ++D+  +    GEEK +  IA  I   RQ  P
Sbjct: 118 SFLRDGPLDMRMDNSQGETAAEWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADRQKTP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T++L+ LI + +  SK    HPATR FQA+RI++N+E+E++ Q L  A   L   G 
Sbjct: 178 FLRTKELADLIAR-ICKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALVVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L V+SFHSLEDR+VK+F             +  +       + +    K   P+ E+V  
Sbjct: 237 LSVISFHSLEDRMVKRFIRRNCQGKSVPHGLPITEDELDKTRLLKSIGKATKPSAEEVER 296

Query: 303 NRRSRSAKLRAGMRTV 318
           N+R+RS+ LR   R  
Sbjct: 297 NKRARSSILRVAERLE 312


>gi|167765841|ref|ZP_02437894.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1]
 gi|167712558|gb|EDS23137.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1]
 gi|291559197|emb|CBL37997.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SSC/2]
          Length = 312

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 172/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H+ VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++
Sbjct: 1   MEFKHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + +  +K++ ++ +  +  +   + D   + VDG++ DLGVSS Q+D  +RGF++++
Sbjct: 61  ASTKRLEPFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDEKERGFTYRE 120

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN+ +  +L  I+   GEEK A  IA  IV +R+ +P +TT
Sbjct: 121 DVPLDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  +    +    HPA ++FQA+RI  N E++ L   + +    L  GG L +
Sbjct: 181 GQLIEVIKGAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK+ F           +       + +  + +T+K ++P +E++ +N+R+
Sbjct: 241 ITFHSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRA 300

Query: 307 RSAKLRAGMR 316
           +S+KLR   R
Sbjct: 301 KSSKLRVFER 310


>gi|295106887|emb|CBL04430.1| S-adenosyl-methyltransferase MraW [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 323

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 14/322 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S        H PVLL + +   N  P +  +DAT G  G+S    K+   G  +I +D
Sbjct: 1   MTSEYQQQEFQHTPVLLAECLEQSNLKPQQTFVDATLGGAGHSLEMAKLIGPGGTLIGID 60

Query: 66  RDPFAVSCGQETMRDYKE----QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           +D  A++  +  +    +       L +  F  + D +      GVD  +FDLGVSS+QI
Sbjct: 61  QDEVALAAARSRLESLPDGQRPNLELLRGNFGDMDDLLVSAEVPGVDAFLFDLGVSSVQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           D   RGFSF+++GPLDMRM     +   +++VN  N  DLTRI+    +EK ASRIA  I
Sbjct: 121 DTPSRGFSFKENGPLDMRMDPGKTTLTAAEIVNTYNAADLTRIIRAYSDEKWASRIADFI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R +   +T++ L  +I+  +  S +    HPA R+FQALRI VN+E++ L +GL +A
Sbjct: 181 VRSRANGRIETSEQLVDVIKAAIPASARRAGGHPAKRTFQALRIEVNSELDVLRRGLDAA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVV 294
            + L  GG L+V+S+HSLEDR+VK+ F + + +      +         +   +T+K ++
Sbjct: 241 VRWLNPGGRLVVISYHSLEDRIVKETFNAYANRCTCPPDLPVCVCGKEPILDLVTRKPLL 300

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
           PT  ++  N R+RSAKLR   +
Sbjct: 301 PTAGEIERNPRARSAKLRVARK 322


>gi|312898967|ref|ZP_07758355.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis
           F0359]
 gi|310620129|gb|EFQ03701.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis
           F0359]
          Length = 310

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 170/306 (55%), Gaps = 8/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HV VL E+ I  +   P  + +D T G GG+SR+          +I LD+D  A+    E
Sbjct: 5   HVSVLREETIHAVLGDPAGIYVDCTLGGGGHSRALADLLVKDGLIIGLDQDEDAIRAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            M+D   +F+  Q  F  L + + D  +     ++FDLGVSS Q+D  +RGFS+Q  GPL
Sbjct: 65  RMQDAPCRFTAVQRNFRYLGEVLDDLNIPTVDGIMFDLGVSSYQLDNPERGFSYQHDGPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G  SA DV+N  +  DL RI+   GEE+ A RIA  IVK R+  PF+ T++L 
Sbjct: 125 DMRMDRHGKKSAYDVINAYDEADLYRIIKDYGEERWAKRIASFIVKARREKPFERTEELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +    + +  HPA R+FQA+RI VN+E++ L      A   LK GG + +++FH
Sbjct: 185 RVIKQAIPAGARKDGPHPAKRTFQAVRIEVNDELKILQDTFEIAANRLKPGGHIGIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+ K+     +   +   H+     H      +  K + P++E++  N R+RSAKL
Sbjct: 245 SLEDRIAKQTLRKLATGCICPPHIPVCTCHHEAILKVKGKGIGPSKEELELNPRARSAKL 304

Query: 312 RAGMRT 317
           R G R 
Sbjct: 305 RVGTRI 310


>gi|258404866|ref|YP_003197608.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM
           5692]
 gi|257797093|gb|ACV68030.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM
           5692]
          Length = 332

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 10/315 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL +V+  L P PG   LD T G GG++ +  +   +  V+ LDRD  A+   +  
Sbjct: 18  HQSVLLAEVLQALKPRPGGRYLDGTLGLGGHAEAILEHAPDSEVLGLDRDGAALDAAEAR 77

Query: 78  MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++  + Q +FS+     D +  + VDG + DLGVSS+Q+D  +RGFSF   GPLD
Sbjct: 78  LDRFGDRVHMAQISFSRFVSALDQLGWETVDGALIDLGVSSLQLDSPERGFSFLHDGPLD 137

Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM        A  ++N+A+ + L RI+   GEE  A RIA  IV  R+  P +TT  L+
Sbjct: 138 MRMDSGMGVPPAKSLLNKASQETLRRIIRDYGEEPMAGRIAKRIVMTREKTPLETTLQLA 197

Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++++     +   +R HPAT++FQALRI VN E+EEL   L +    L  GG L V+SF
Sbjct: 198 HVVEQAYPAKRRAQSRNHPATKTFQALRIAVNKELEELEAFLEAIPDRLCVGGRLAVISF 257

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK      +      +   I    +    Q +TKK ++P+ E++  N RSRSA
Sbjct: 258 HSLEDRIVKHRLRREARGCRCPKEQPICVCGYRPRLQVLTKKPLLPSAEEMEANSRSRSA 317

Query: 310 KLRAGMRTVERSIED 324
           KLR   R       D
Sbjct: 318 KLRVAERIEPEYPHD 332


>gi|291547133|emb|CBL20241.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. SR1/5]
          Length = 311

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 10/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + I  L   P  + +D T G  G++   CK        I +D+D  A+ 
Sbjct: 1   MEFKHKSVLLNETIDGLRVKPDGIYVDGTLGGAGHATEVCKKLSAKGRFIGIDQDQDAII 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  +  Q ++ ++ +  + D +  +    VDG++ DLGVSS Q+D  +RGFS++ 
Sbjct: 61  AASERLSAF-NQVTIIRSNYCYMADELRSRGIEKVDGILLDLGVSSYQLDNEERGFSYRY 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A D+VN    ++L RI+   GE+K A  IA  IV  R+ AP +TT
Sbjct: 120 DSPLDMRMDRRQSRTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVAAREQAPIRTT 179

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I+  +         HPA R+FQA+RI +N E++ L   L      L  GG + +
Sbjct: 180 GELTEIIRGAIPMKIQATGGHPAKRTFQAIRIELNRELDVLRDSLDGMIDLLDDGGRICI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                     +  + IT+K ++P +E++  N RS
Sbjct: 240 ITFHSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPGKEEMEENPRS 299

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 300 KSAKLRIFER 309


>gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
 gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
          Length = 322

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 140/312 (44%), Positives = 184/312 (58%), Gaps = 5/312 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   H PVLL +VI  L P PG V++DATFGAGGY+R+    G+ VI LDRDP       
Sbjct: 2   TEAPHAPVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGAQVIGLDRDPTVQPHAD 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +D+  QF L +  FS L     D     +DG VFD+GVSSMQ+D  +RGFSF + GP
Sbjct: 62  AVAKDFPGQFQLIRTPFSGLAQAFADSGKAKLDGAVFDIGVSSMQLDQAERGFSFMRDGP 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G +A+D+VN  +   L  I  + GEE+Q+ R+A AI++RR    F  T DL+
Sbjct: 122 LDMRMSDEGETAADIVNSWDHGPLAHIFKLYGEERQSGRVATAILRRRVEQSFTRTLDLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K +   +   IHPATR FQALRI VN+E+ EL +GL +AE  L  GG L VV+FHS
Sbjct: 182 EVVEKALGGRRGAPIHPATRVFQALRIAVNDELGELERGLEAAEATLAPGGRLAVVTFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F   R+G   A     P   +     F    K      + + + N R+RSAK
Sbjct: 242 LEDRIVKAFLTERTGNTPAGSRHAPIAVDPRKPSFTLQFKGAREAGEGERSTNPRARSAK 301

Query: 311 LRAGMRTVERSI 322
           LRA +RT   + 
Sbjct: 302 LRAAVRTEAPAW 313


>gi|322516106|ref|ZP_08069041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus vestibularis ATCC 49124]
 gi|322125401|gb|EFX96751.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus vestibularis ATCC 49124]
          Length = 316

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+   + +    +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ++A +VVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+QE++  N RS SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|89067948|ref|ZP_01155392.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516]
 gi|89046546|gb|EAR52602.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516]
          Length = 320

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 143/326 (43%), Positives = 197/326 (60%), Gaps = 16/326 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS+A       H PVL+E +I    P      LD TFG GGY+R+  + G+ +VI +DRD
Sbjct: 1   MSAA-----APHTPVLIEPIIEACAPVS-GTWLDGTFGFGGYARALLEAGAAHVIGIDRD 54

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A           + + +L + TFS+L      + +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 55  PLAHELAG--WVADEPRVTLIRGTFSELD--RHGEALDGVVLDLGVSSMQLDRPERGFSF 110

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              GPLDMRMS  G SA+D+VN+ + + +  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 111 MSDGPLDMRMSQDGPSAADLVNELDERTIADILFNYGEERASRRIARAIVRAR---PLAT 167

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L++L++  +   K  + HPATR+FQALRI VNNE  ELA+GL +AE+AL  GGLL V
Sbjct: 168 TAELAALVEGCLPRPKPGQSHPATRTFQALRIAVNNEYGELAEGLMAAERALAPGGLLAV 227

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G+        P  A  P  F  +T+K +   + +VA N R+
Sbjct: 228 VTFHSVEDRMVKRFMQARAGQTGGPSRHAPDVAQAPPAFGLVTRKAIGADEAEVARNPRA 287

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSAKLR   RT   +   D   + +P
Sbjct: 288 RSAKLRIARRTDAPAAPVDIKSLGMP 313


>gi|288939887|ref|YP_003442127.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180]
 gi|288895259|gb|ADC61095.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180]
          Length = 339

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLLE+ ++ L      + +D TFG GG+SR+          ++  DRDP AV+ G+ 
Sbjct: 35  HKPVLLEESVSALLVQSDGIYVDGTFGRGGHSRAILARLGAAGRLLGFDRDPEAVAVGRA 94

Query: 77  TMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+ Q +F+ +     +   D  ++G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 95  -LAAQDPRFSIHQGSFADIGRLLDEAGVDARLNGLLLDLGVSSPQLDTPERGFSFMAEGP 153

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA+  + +A   ++  +L   GEE+ A+RIA AIV+ R   P +TT  L
Sbjct: 154 LDMRMDPDSGESAAQWLARAEQGEIATVLHEFGEERFANRIARAIVETRTQTPIRTTAQL 213

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V   +  + HPATR+FQA+RI VN E+E L + L      L  GG L V+SFH
Sbjct: 214 AELVARAVPRREPGK-HPATRTFQAVRIQVNGELEALRRCLDQVCDRLAVGGRLAVISFH 272

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F    +      + +               K V P+  + A N R+RSA L
Sbjct: 273 SLEDRLVKRFIRREAKGPELPKGVPARAVEVQGRLRPVGKSVRPSTAEEALNPRARSAIL 332

Query: 312 RAGMR 316
           R   R
Sbjct: 333 RVAER 337


>gi|312131313|ref|YP_003998653.1| s-adenosyl-methyltransferase mraw [Leadbetterella byssophila DSM
           17132]
 gi|311907859|gb|ADQ18300.1| S-adenosyl-methyltransferase MraW [Leadbetterella byssophila DSM
           17132]
          Length = 301

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 152/302 (50%), Gaps = 9/302 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75
             H PV+L + +  LN  P  + +D TFG GG+SR   K     ++   D+D  A     
Sbjct: 4   SYHKPVMLTECLQGLNIRPDGIYVDVTFGGGGHSREILKHLTTGHLYGFDQDADAQEQAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +                 +         VDG++ DLG+SS QID  +RGFS +  G LDM
Sbjct: 64  KISSPNFTFIRANFRNIRKYLKIYGVSKVDGILADLGISSHQIDTPERGFSTRFDGELDM 123

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  +GISA +VVN+    +L +I G+ GE K A  +A AI    +     T QDL   
Sbjct: 124 RMNTSTGISAKEVVNEYAEDELHKIFGMYGELKNARSVARAI--ALEKGNIHTVQDLKDT 181

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++      K N+     + FQALRI VN E++ L + L    + L  GG L+V+S+HSLE
Sbjct: 182 LKHLAPRGKENK--FYAQVFQALRIEVNEELKVLEEFLLQVPEVLAPGGRLVVMSYHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR VK F  S        + +  +   P   Q++T+K V  ++ ++A N R+RSAKLR  
Sbjct: 240 DRPVKNFIRSGKFYGEVEKDLFGNEIKP--LQAVTRKAVEASEAEIAENPRARSAKLRIA 297

Query: 315 MR 316
            +
Sbjct: 298 EK 299


>gi|171913327|ref|ZP_02928797.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM
           4136]
          Length = 331

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 131/305 (42%), Positives = 177/305 (58%), Gaps = 9/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            H+PVL  +V+A L PAPGKVILD T G GG++    + G+ VI LD+D  A+S   E +
Sbjct: 26  YHLPVLPAEVVAALAPAPGKVILDGTLGGGGHTSLLLQAGAEVIGLDQDTDALSHAGERL 85

Query: 79  RDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + Y    QF   Q+ F      +       +DG++ DLGVSS Q+D   RGFSF   GPL
Sbjct: 86  KAYAATGQFRSVQSNFRDFPAVLQALGITALDGLLVDLGVSSYQLDVASRGFSFMHEGPL 145

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   G +A+D+VN+    +L RIL   GEE+Q+ RI  A+V+RR+  PF TT DL+
Sbjct: 146 DMRMNTGGGRTAADLVNEDEPAELERILWEYGEERQSRRIVRALVQRREQRPFTTTSDLA 205

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S I   +   +  + HPAT +FQ LRI VN+E+  LA  L +A   LK GG L V+SFHS
Sbjct: 206 SAIAGVI--PRRGKTHPATLTFQGLRIAVNDELAALADFLHAAPAWLKPGGRLAVISFHS 263

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F   S + +       P        + + +K    T E+V  N RSRSAKL
Sbjct: 264 LEDRMVKQAFQRLSTEWLDRPEWPEPRRNPEHCLRLLHRKPQEATDEEVKRNPRSRSAKL 323

Query: 312 RAGMR 316
           R   +
Sbjct: 324 RTAEK 328


>gi|218258181|ref|ZP_03474583.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225704|gb|EEC98354.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii
           DSM 18315]
          Length = 310

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 17/309 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
             +  HVPV+L + +  L   P  V +D TFG GG+SR           +   D+D  A 
Sbjct: 4   KEVCYHVPVMLHESLEGLGIQPSGVYVDVTFGGGGHSREILNRLDNEGTLYGFDQDADAE 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
                       +F   ++ F  L +++        VDG++ DLGVSS   D  DRGFSF
Sbjct: 64  KN-----IPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G +A+D+VN    + L  +  + GE K A ++A  +V+ R+    +
Sbjct: 119 RFDGALDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIE 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  D   +I+   +  K+       + FQALRI VN+E+  L + L+   + LK GG L+
Sbjct: 179 TIADFLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLV 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDRLVK F  + + +  A +    +   P  F+ +  KV+VP+ E++  N RS
Sbjct: 237 VITYHSLEDRLVKNFLKTGNFEGKAEQDFFGNIKSP--FRLVNNKVIVPSGEEIERNPRS 294

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 295 RSAKLRIAE 303


>gi|254441632|ref|ZP_05055125.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307]
 gi|198251710|gb|EDY76025.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307]
          Length = 325

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 147/326 (45%), Positives = 194/326 (59%), Gaps = 8/326 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVS 72
                 H+PVL+  +IA  +P      LDATFGAGGY++     G+  VI +DRDP    
Sbjct: 4   TDDTPPHIPVLIGPLIAACSPIS-GTWLDATFGAGGYTQRLLAAGADKVIGVDRDPAVFK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             Q          +L + TFS L     D  +DG+V DLGVSSMQID  +RGFSF + GP
Sbjct: 63  MAQ--WAADNPAITLVEDTFSNLDTIASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGP 118

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN+A+  DL  IL I GEE+ + RIA  IV++R   P  TT  L+
Sbjct: 119 LDMRMGQEGQSAADIVNEADETDLADILYIYGEERASRRIARKIVEQRDREPITTTLRLA 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI+  +  SK  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L +V+FHS
Sbjct: 179 KLIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKPGGYLAIVTFHS 238

Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           +EDR+VK+F   R G    A R+          F+ ITKK     +++VA N RSRSAKL
Sbjct: 239 VEDRMVKRFLQQRGGGMGNANRYSPVLETEKPSFEIITKKAKAADEDEVAQNPRSRSAKL 298

Query: 312 RAGMRTVERSIE-DDSFVHLPRLPTL 336
           R   RT   +   D S + +P+L  +
Sbjct: 299 RVARRTDAPAGALDRSKIGMPQLKAI 324


>gi|221638505|ref|YP_002524767.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides KD131]
 gi|262825605|sp|B9KNI8|RSMH_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221159286|gb|ACM00266.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Rhodobacter sphaeroides KD131]
          Length = 331

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 144/329 (43%), Positives = 199/329 (60%), Gaps = 5/329 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68
            +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP
Sbjct: 1   MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQ
Sbjct: 60  LALEMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           K GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T
Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV
Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVV 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+F   RS G+    R+   + A    F    ++ + P + ++A N R+R
Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRAR 298

Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           SA+LR G+RT   + + D   +  P +P 
Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327


>gi|259503028|ref|ZP_05745930.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus antri DSM 16041]
 gi|259168894|gb|EEW53389.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus antri DSM 16041]
          Length = 317

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 110/317 (34%), Positives = 173/317 (54%), Gaps = 11/317 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +     +HV VLL++ +A LN  P    +D T G GG++ +        ++ + D+D  A
Sbjct: 1   MAMAEFNHVTVLLKEAVAGLNIRPTGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETA 60

Query: 71  VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125
           +   ++ + D     + +L +  F  LQ  +       VDGV++DLGVSS Q D   RGF
Sbjct: 61  IDYNRDQLNDAIAAGKLTLVEDNFRHLQQALAAHGVRRVDGVLYDLGVSSPQFDDAQRGF 120

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++   PLDMRM+    +SA +VVN+   + L RIL   GEE+ A +IA  I +RRQ  P
Sbjct: 121 SYKLDAPLDMRMNQDQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREP 180

Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG
Sbjct: 181 IRTTFELVDVIKEAIPAAARRHGGHPAKKSFQAVRIAVNDELGALEESLEQALAMLTVGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + V++F SLEDRLVK  F  +S     +     +        F+ I +K ++P+ +++A
Sbjct: 241 RISVITFQSLEDRLVKTLFREKSSLSADLPQGLPVIPAGMSPDFKLINRKPILPSAQELA 300

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+ SAKLR   +  
Sbjct: 301 ANHRAHSAKLRIIEKIK 317


>gi|146305949|ref|YP_001186414.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp]
 gi|262825105|sp|A4XQR6|RSMH_PSEMY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145574150|gb|ABP83682.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp]
          Length = 314

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 12/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   H+ VLL++ +  L        +D TFG GG+SR        G  ++  D+DP 
Sbjct: 1   MTDSTLRHITVLLDEAVEGLAVRADGCYIDGTFGRGGHSRLILHKLGPGGRLLGFDKDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           A++ G+  +     +F + Q +F++L D          V GV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIATGEA-LAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGVLLDLGVSSPQLDDPERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF   GPLDMRM+   G+SA+D +  A   ++ R+L   GEE+ A R+A A+V+RR+  P
Sbjct: 120 SFLNDGPLDMRMNPDVGVSAADWIATAEEDEIARVLKDYGEERFAKRMARAVVQRREQQP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL+ ++ +     +  + +PATR+FQ +RI+VNNE+ +L +GL +A +AL+ GG 
Sbjct: 180 FTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIYVNNELGDLERGLDAALEALEVGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           L+V+SFHSLEDR+VK+F   ++        R +            +  K V     ++  
Sbjct: 239 LVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLIGKPVYAGDAELKA 298

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSA +R   +
Sbjct: 299 NPRSRSAVMRIAEK 312


>gi|56459539|ref|YP_154820.1| S-adenosyl-methyltransferase MraW [Idiomarina loihiensis L2TR]
 gi|68565448|sp|Q5R0L7|RSMH_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56178549|gb|AAV81271.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 315

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/317 (39%), Positives = 177/317 (55%), Gaps = 13/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +  T   HV VLLE+ I  L   P    +DATFG GG++R+          VIALD+DP 
Sbjct: 1   MITTSPQHVSVLLEESIEALATDPQGTYIDATFGRGGHTRALLNQLGDDARVIALDQDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
             +           +F +    FS LQ    D   ++ V G++FDLGVSS Q+D  +RGF
Sbjct: 61  --AIAAAAAFADDPRFQIIHTPFSNLQQVLDDLQLNRQVTGILFDLGVSSPQLDDAERGF 118

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM+ + G +A++ +N+A   D++ +L   GEE+ A RIA AIV  R+  P
Sbjct: 119 SFMRDGPLDMRMNTTSGETAAEWLNRAEKDDISWVLKEYGEERFARRIASAIVMDREKKP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+ L+ +I + V   K    HPATR+FQA+RI +N E+E++ Q L ++   LK  G 
Sbjct: 179 FTRTKQLAEMIAR-VSPVKEKHKHPATRTFQAIRIHINRELEQIEQALEASLSGLKEDGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAF 302
           L+V+SFHSLEDRLVK+F    S        +  + A     +++ K  K + P + +V  
Sbjct: 238 LVVISFHSLEDRLVKRFIRKHSEGKQLPPGLPVTEAERNKDKALEKVGKAIKPGKAEVQL 297

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRS+ LR   R   
Sbjct: 298 NPRSRSSVLRIARRVRN 314


>gi|77462648|ref|YP_352152.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1]
 gi|88909216|sp|Q3J4N3|RSMH_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77387066|gb|ABA78251.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1]
          Length = 331

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 144/329 (43%), Positives = 199/329 (60%), Gaps = 5/329 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68
            +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP
Sbjct: 1   MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQ
Sbjct: 60  LALKMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           K GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T
Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV
Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVV 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+F   RS G+    R+   + A    F    ++ + P + ++A N R+R
Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRAR 298

Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           SA+LR G+RT   + + D   +  P +P 
Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327


>gi|251783120|ref|YP_002997423.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391750|dbj|BAH82209.1| S-adenosyl-methyltransferase mraW [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 337

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/327 (32%), Positives = 172/327 (52%), Gaps = 15/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +       +DG+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+ +  PLDMRM     ++A DVVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +              F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K ++P+QE++A N R+ SAKLR   + 
Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKI 335


>gi|260172400|ref|ZP_05758812.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D2]
          Length = 304

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +
Sbjct: 118 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEVVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|145600350|ref|YP_001164426.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Pestoides F]
 gi|263504690|sp|A4TQ91|RSMH_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145212046|gb|ABP41453.1| hypothetical protein YPDSF_3095 [Yersinia pestis Pestoides F]
          Length = 318

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 21/323 (6%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++        H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NNKTVDNNYKHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   ++       +FS+    FS L  YV D      +DG++ DLGVSS Q+D  +
Sbjct: 64  DPEAIEAAKQI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI     F      HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANASPF---RDKHPATRSFQAIRIYINSELEEIERALDGAHEVLAP 237

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDR+VK F    S        +  + A          +S+ K  ++P 
Sbjct: 238 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPG 295

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             ++A N R+RS+ LR   R  E
Sbjct: 296 DAEIAENPRARSSVLRFAERIGE 318


>gi|167764163|ref|ZP_02436290.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC
           43183]
 gi|167698279|gb|EDS14858.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC
           43183]
          Length = 303

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 161/311 (51%), Gaps = 16/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +   Y   + VD V+ DLGVSS   D  +RGFS
Sbjct: 61  A-----ERNIVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAVLADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G++A+D+VN  + + L  I  + GE K + ++A  IVK R     
Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARAVQKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 GTIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP  +++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDNDEIERNPR 291

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   +
Sbjct: 292 SRSAKLRIAEK 302


>gi|269960233|ref|ZP_06174608.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3]
 gi|269835040|gb|EEZ89124.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3]
          Length = 316

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  D      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAAKI---DDPRFTIIHGPFSGMAQYAEDYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R+    + 
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S   K +     PT++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|261379351|ref|ZP_05983924.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703]
 gi|284797791|gb|EFC53138.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703]
          Length = 320

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 168/315 (53%), Gaps = 12/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VLL + +  L      + +D TFG GG+SR           ++  D+DP A++
Sbjct: 5   ENYQHVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGKQGRLVVFDKDPEAIA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +    ++ S+    F   Q  + +     +DG +FDLG+SS QID G RGFSF+ 
Sbjct: 65  VANE-LAVQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT
Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ L+ + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V+
Sbjct: 184 RKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +   N R+
Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTETETNPRA 301

Query: 307 RSAKLRAGMRTVERS 321
           RSA LR   R+    
Sbjct: 302 RSAVLRVAERSSGEF 316


>gi|239947593|ref|ZP_04699346.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|241068474|ref|XP_002408444.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis]
 gi|215492432|gb|EEC02073.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis]
 gi|239921869|gb|EER21893.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 307

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCG 74
            I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     I ALDRDP  +   
Sbjct: 1   MIQSHVSVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESYDCYITALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  ++Y E+F   +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIKQNYGERFDFIETNFADSFTKLKKKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G++A + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLNAEEFVNTAEEKELADVIYKYGDESFSRRIARRIVEYRKTARIDSTDKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI++N+E+ EL + L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRNSI-GFRKGKIDPATKTFQAIRIYINDELGELERFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A       +         + IT K + P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVARSKYAKDDMAIDPDKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|119469206|ref|ZP_01612190.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7]
 gi|119447458|gb|EAW28726.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7]
          Length = 312

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VL+++ I  L   P  + +D TFG GG+S            + A+D+DP A+ 
Sbjct: 3   AQFEHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGDAGRLQAIDQDPQAIK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++   D +  F++    FS+L D          VDG++ D+GVSS Q+D  +RGFSF 
Sbjct: 63  SAEKFADDSR--FAIAHTRFSKLYDVAEQNDLIGKVDGILLDIGVSSPQLDDAERGFSFM 120

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM  + G SA+  + +A + D+T ++  LGEEK   RIAH I++ R+  P  T
Sbjct: 121 KDGPLDMRMDPTSGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILETREHTPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L+SA K LK GG L+V
Sbjct: 181 TKQLADLVDEAV-PVKDKFKHPATRTFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F   +S      R +  ++A     +      K + P+ E+VA N R
Sbjct: 240 ISFHSLEDRIVKQFIRKQSKGEALPRGLPLTDAQINQNLTLKAVGKAIKPSTEEVARNPR 299

Query: 306 SRSAKLRAGMR 316
           SRS+ LR   R
Sbjct: 300 SRSSVLRVAQR 310


>gi|75909403|ref|YP_323699.1| S-adenosyl-methyltransferase MraW [Anabaena variabilis ATCC 29413]
 gi|123608960|sp|Q3M882|RSMH_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|75703128|gb|ABA22804.1| methyltransferase [Anabaena variabilis ATCC 29413]
          Length = 305

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 119/328 (36%), Positives = 176/328 (53%), Gaps = 26/328 (7%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           M+S S K++S  +      H+PVL ++V+  L    G   LDAT G GG+SR   +    
Sbjct: 1   MKSHSAKSLS--VEEATFSHLPVLPQEVVTGLAVRSGGHYLDATVGGGGHSRLILEAAPD 58

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
             + A+D+D  A++  ++ + ++ EQ    ++ F+  +   P    DGV+ DLGVSS  +
Sbjct: 59  VRLTAVDQDGDALTAAKKELAEFGEQVKFVRSNFAAYE--FPVASFDGVLADLGVSSYHL 116

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF+    LDMRM     +SA+DV+N  +  +L  I    GEE+ + RIA  IV
Sbjct: 117 DTPERGFSFRHQANLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIV 176

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++R      TT+   ++        +  RIHPATR FQALRI VN+E++ L   L  A K
Sbjct: 177 EKRPFH--TTTELAEAIASSVPPKYRYARIHPATRVFQALRIVVNDELKSLETFLEKAPK 234

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  GG + ++SFHSLEDRLVK    +                     + +TKK ++ T+
Sbjct: 235 ALVPGGRIAIISFHSLEDRLVKHGLRNS-----------------PSLKVLTKKPIIATE 277

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDD 325
            ++A N RSRSAKLR   +  E   ED+
Sbjct: 278 AEIANNPRSRSAKLRIAEKKAEMGQEDN 305


>gi|312143945|ref|YP_003995391.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus']
 gi|311904596|gb|ADQ15037.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus']
          Length = 310

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 162/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
              +H  VLL + I  LN     V LD T G GG+S    K       +IA+DRD  A+ 
Sbjct: 1   MSFEHKAVLLNEAIKYLNIKEDGVYLDGTLGRGGHSFEILKKLSEHGKLIAIDRDIEAIK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK 129
             +E  +       L  A F      +    +     ++FDLGVSS Q+D  +RGFS+QK
Sbjct: 61  AVRE-KQPENSSLILEHANFLDFDKVLNKHSISKVDGMLFDLGVSSPQLDNAERGFSYQK 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ +   +A+D+VN  + K+L +I+   GEE  A RIA  IV+ R+    + T
Sbjct: 120 DGPLDMRMNQNQALTAADIVNNYSQKELIKIISDYGEENWAVRIAEFIVEARKKEEIERT 179

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  V   ++    HPA R+FQALRI  N+E+ +L + ++ +   L  GG +++
Sbjct: 180 SELVEIIKAAVPKGARRGGGHPARRTFQALRIATNDELNQLQKLIKKSVSFLNKGGRIVI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK  F   +                 +  + IT+  +   + +V  N R+
Sbjct: 240 ISFHSLEDRIVKHSFRELAKDCTCPPDFPICVCDKVSHVKVITRSPIEAKKNEVDSNPRA 299

Query: 307 RSAKLRAGMRT 317
           RSAKLRA  + 
Sbjct: 300 RSAKLRAAEKI 310


>gi|224024612|ref|ZP_03642978.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM
           18228]
 gi|224017834|gb|EEF75846.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM
           18228]
          Length = 304

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 171/315 (54%), Gaps = 19/315 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+         H+PVLLE+ I  +N  PG + +D TFG GG+S+   +     S + + D
Sbjct: 1   MNET---EQTYHIPVLLEESIDGMNIQPGGIYVDMTFGGGGHSKEILRRMDKDSRLFSFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
           +D  A     E      E+F+  ++ F  L +++       VD ++ DLGVSS   D  +
Sbjct: 58  QDEDA-----ERNIVNDERFTFVRSNFRYLHNFLRYYGVEKVDAILADLGVSSHHFDDSE 112

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  G LDMRM+   GI+A+D+VN    + L  +  + GE K + ++A  +VK R 
Sbjct: 113 RGFSFRFDGNLDMRMNKRAGITAADIVNTYEEERLADLFYLYGELKNSRKLAATLVKARS 172

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           S    T  D   +++    + +        + FQALRI VN E+E L + L +A +ALK 
Sbjct: 173 SKKIVTIGDFLDIVKP--LYGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKP 230

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+++HSLEDR+VK    + + +  +V+    +   P  F+ +  KV+VPT+E++ 
Sbjct: 231 GGRLSVITYHSLEDRIVKNVMKTGNAEGKSVQDFYGNVQSP--FRLVNNKVIVPTEEEII 288

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 289 RNPRSRSAKLRIAEK 303


>gi|301169870|emb|CBW29474.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae 10810]
 gi|309973403|gb|ADO96604.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2846]
          Length = 321

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA   +T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|330859314|emb|CBX69661.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           enterocolitica W22703]
          Length = 320

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 175/323 (54%), Gaps = 19/323 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++ I      H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NNHIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   +        +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +
Sbjct: 64  DPQAIEAAKSI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDR+VK F    S        +  + A          +S+ K  ++P 
Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPP 297

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             +VA N R+RS+ LR   R  E
Sbjct: 298 DAEVAENPRARSSVLRFAERIKE 320


>gi|293370481|ref|ZP_06617034.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f]
 gi|299147137|ref|ZP_07040204.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23]
 gi|292634473|gb|EFF53009.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f]
 gi|298515022|gb|EFI38904.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23]
          Length = 304

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDTHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +
Sbjct: 118 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|322412440|gb|EFY03348.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 337

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/327 (32%), Positives = 175/327 (53%), Gaps = 15/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLG 112
             ++   D+D  A+   Q  ++ Y  K Q +  +  F  L+   + +    +DG+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRHLKARLEALGVTEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS++++ PLDMRM     ++A DVVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDEKERGFSYKQNAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +             +F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEVSTVDVPKGLPFIPEDMKPIFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K ++P+QE++A N R+ SAKLR   + 
Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKI 335


>gi|257063602|ref|YP_003143274.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM
           20476]
 gi|256791255|gb|ACV21925.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM
           20476]
          Length = 318

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +  L+       +D+T G  G+S          S +I +D+D  A+   ++
Sbjct: 7   HTPVLLAECLEHLHLQTQHTFVDSTLGGAGHSYEAAKLLGPDSLLIGIDQDQMALDAARK 66

Query: 77  TMR----DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D   +  L +  F  L D + +  V     ++FDLGVSS QID   RGFSF++
Sbjct: 67  RLETLGEDAAPKLKLLRGNFGNLDDLLVEACVPGIDAILFDLGVSSPQIDFVSRGFSFKE 126

Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM     +   ++++N  N ++LTRI+    +E+ ASRIA  IV  R++AP +T
Sbjct: 127 DAPLDMRMDPGNQTINAAELINTLNEQELTRIIYENSDERWASRIASFIVAARETAPIET 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  +I+  +  S +    HPA R+FQALRI VN+E+  L  GL +A + L  GG + 
Sbjct: 187 SGQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNSELTVLKSGLEAAIRWLNPGGRVA 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK  FA  S        +         V + IT+K ++PT+E++A N R
Sbjct: 247 VISYHSLEDRIVKNMFAEHSRTCTCPPELPVCVCGAKPVLKVITRKPILPTEEEIANNPR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAEK 317


>gi|126461541|ref|YP_001042655.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17029]
 gi|262825567|sp|A3PHR7|RSMH_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126103205|gb|ABN75883.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17029]
          Length = 331

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 144/329 (43%), Positives = 200/329 (60%), Gaps = 5/329 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68
            +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP
Sbjct: 1   MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQ
Sbjct: 60  LALKMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           K GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T
Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEESLADILYHYGEERASRRIARAIVEARAAAPITRT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV
Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVV 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+F   RS G+    R+   + A+   F    ++ + P + ++A N R+R
Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAYAPRFTLPLRRAISPDEAELAENPRAR 298

Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           SA+LR G+RT   + + D   +  P +P 
Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327


>gi|209696060|ref|YP_002263990.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238]
 gi|263446678|sp|B6ELI3|RSMH_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|208010013|emb|CAQ80336.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238]
          Length = 316

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 162/317 (51%), Gaps = 18/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                HV VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSRLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +        +F++    FS L+ YV +      +DGV+ DLGVSS Q+D  DRGFSF
Sbjct: 62  AEAKTI---TDPRFNIIHGPFSGLKGYVEELGLVGQIDGVLLDLGVSSPQLDDADRGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSA 183
            K GPLDMRM  + G+  S  +  A+V+D+T ++   GE+K A RIA  IV  R   ++ 
Sbjct: 119 MKDGPLDMRMDPTSGMPVSQWLLTADVEDITWVIREFGEDKHAWRIAKGIVAYRDNEENE 178

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T  L+ LI      +   + HPATR+FQA RI++N+E++E+   L  A      GG
Sbjct: 179 PLTRTGQLAKLISDVAPKNFKEKKHPATRTFQAFRIYINSELDEIDTALNGALDVFAEGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299
            L V+SFHSLEDR+VK F    S        +  +                K + PT  +
Sbjct: 239 RLSVISFHSLEDRMVKHFIRKESRGPQVPHGIPLTENQIKALGSAKMKPIGKAIKPTVNE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N RSRS+ LR   R
Sbjct: 299 VDVNVRSRSSVLRIAER 315


>gi|145637120|ref|ZP_01792783.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH]
 gi|145269774|gb|EDK09714.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH]
          Length = 321

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA   +T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKYKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|282882847|ref|ZP_06291452.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B]
 gi|281297258|gb|EFA89749.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B]
          Length = 320

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 117/319 (36%), Positives = 173/319 (54%), Gaps = 8/319 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               HV VL  +V+  LN    K+ +DAT G  G+S+           +I +D+D  A+ 
Sbjct: 1   MEFKHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIK 60

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             QE + +Y+    F+     F ++ D +  K VDG++ DLGVSS Q D G+RGFS++  
Sbjct: 61  KSQEVLSEYENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   +A  +VN+ +  +L RI+   GEE  A RI+  IV+ R+     TT 
Sbjct: 121 SELDMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTF 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL  +I+K V    + +  HPA R+FQALRI VN+E+  L + +    + L  GG L ++
Sbjct: 181 DLVEVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAII 240

Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK  F    S  V     +I +       + IT+K +VPT+E++  N RS 
Sbjct: 241 SFHSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSH 300

Query: 308 SAKLRAGMRTVERSIEDDS 326
           SAKLR   +      E+++
Sbjct: 301 SAKLRVAEKLEVSHDEENN 319


>gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 328

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 141/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)

Query: 9   MSS---AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIAL 64
           M+S           H+PVLL +V+  L P  G V++D TFGAGGYS +        V  +
Sbjct: 1   MTSPAQTPDSDSRPHIPVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGI 60

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCG 121
           DRDP A++ GQ   +    + S+ +  +  +   +P      VDG+  D+GVSSMQID  
Sbjct: 61  DRDPSAIAAGQRLPQAADGRLSVIEGRYGDMDLLLPQAGIARVDGIALDIGVSSMQIDQA 120

Query: 122 DRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           +RGFSF K GPLDMRM  SG SA+DVVN A+  +L  I+  LGEEK A R+A AIV  R 
Sbjct: 121 ERGFSFAKDGPLDMRMEQSGPSAADVVNTASEAELADIIYHLGEEKYARRVARAIVAARL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF  T  L+++I+  V  S  + I P+TR+FQALRI VN+E+ EL +GL +AE+ L  
Sbjct: 181 DTPFTRTLQLANVIRGAVRKS-GDGIDPSTRTFQALRIHVNDELGELERGLEAAERLLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQED 299
           GG L VV+FHSLEDR+VK F   RSG + A    +P+        F  I++K + P+  +
Sbjct: 240 GGRLAVVTFHSLEDRVVKTFLKKRSGDMPAPSRHLPAQAAGPAPTFSLISRKAIAPSDAE 299

Query: 300 VAFNRRSRSAKLRAGMRTVERSI 322
              N R+RSAKLRA +RT     
Sbjct: 300 CRANPRARSAKLRAALRTDAAPW 322


>gi|332522739|ref|ZP_08398991.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314003|gb|EGJ26988.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 316

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L   P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLRVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  +  K   +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDSIDGILYDLGVSSPQLDERERGFSYRQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A  VVN  +  DL RI    GE++ + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDSDASLTAYHVVNDYSFNDLVRIFFRYGEDRFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + L+ A   L   G + V++
Sbjct: 187 LAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDLLAVEGHISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +              F+ +++K ++P++E++A N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASVVDVPKGIPFIPEEMQPKFELVSRKPILPSKEELAENNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|258508273|ref|YP_003171024.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG]
 gi|257148200|emb|CAR87173.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG]
 gi|259649590|dbj|BAI41752.1| methyltransferase [Lactobacillus rhamnosus GG]
          Length = 313

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F   S      R +     A    +Q + +K ++P+  ++A N R+ 
Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAH 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +   
Sbjct: 302 SAKLRVIEKIRN 313


>gi|330721283|gb|EGG99370.1| rRNA small subunit methyltransferase H [gamma proteobacterium
           IMCC2047]
          Length = 312

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 10/311 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL + +  L   PG   +D TFG GG+SR+          ++ +D+DP A+
Sbjct: 2   SDFNAHDSVLLNEAVDALVVDPGGCYVDGTFGRGGHSRAILSRLSSKGRLLVIDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E   D  E+  +  A+F++L+D       + GV GV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AYAHEHFGD-DERVIIGHASFAELKDLAAAHGLENGVTGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ + +A  ++++ +L   GEE+ A R+A AIV  R   PF 
Sbjct: 121 TQDGPLDMRMDTSRGQSAAEWIAEAPEEEISTVLKEYGEERFARRMAKAIVAERAQRPFT 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T  L+ +I++     +  + +PATR+FQ +RIF+N E+++LA  L  A   L   G L+
Sbjct: 181 RTAHLAEVIKQANPAWEKGK-NPATRAFQGIRIFINRELDDLALVLDQAVDLLADKGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VKKF   +       RH+               K V  +++++  N R+
Sbjct: 240 VISFHSLEDRIVKKFIHKQEKGEPLPRHLPIMQDQIDQRLKRVGKAVKASEQELKDNVRA 299

Query: 307 RSAKLRAGMRT 317
           RSA +R   RT
Sbjct: 300 RSAIMRIAERT 310


>gi|302877570|ref|YP_003846134.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans
           ES-2]
 gi|302580359|gb|ADL54370.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans
           ES-2]
          Length = 311

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 169/312 (54%), Gaps = 12/312 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
             +  H  VLL + +  L   P  + LD TFG GG+S    +       +IALD+D  AV
Sbjct: 2   SEVLVHTTVLLAEAVEALAIKPDGIYLDCTFGRGGHSALILQQLGANGRLIALDKDMTAV 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           S G   +     +F +  + F+ L + + +   + VDG++ DLGVSS Q+D   RGFSF+
Sbjct: 62  SHG---LEWQDARFKMVHSGFTHLAEVLRELGVERVDGILLDLGVSSPQLDEAARGFSFR 118

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM    G +A+  +  A+   LT ++   GEE+ A +IA AI+  R+  P QT
Sbjct: 119 FDAPLDMRMDNSRGPTAAQWLETADEGLLTEVIRDYGEERFAKQIARAIIVAREIQPIQT 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L  L+ KTV  ++    +PATR+FQA+RI++N E+EEL Q L      LK GG L V
Sbjct: 179 TGQLVELVGKTV-RTRETGKNPATRTFQAIRIYLNQELEELKQVLPQCVTHLKPGGRLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK F    +      R++    +     +  +  + +   ++++  N R+
Sbjct: 238 ISFHSLEDRMVKHFIRDMNDADKLPRNVPIRASEVPKGKLNLIGRAIKAGKDELNSNPRA 297

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R+ 
Sbjct: 298 RSAVMRVAERSD 309


>gi|228472692|ref|ZP_04057452.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276105|gb|EEK14861.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC
           33624]
          Length = 305

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 17/310 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H+PVLL++ I  L+  P    +D TFG GG+SR+  +       + A D+DP A 
Sbjct: 2   QENSYHIPVLLQECIEGLSIDPAGTYVDVTFGGGGHSRAILERLSPQGRLFAFDQDPQAQ 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +          ++F+L    F  ++ ++       V GV+ D GVSS Q D  +RGFS +
Sbjct: 62  ANAIA-----DDRFTLIGQNFRHIKRFLRFYGVKEVSGVLGDFGVSSHQFDTAERGFSIR 116

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             G LDMRM+     SA +VVN  + ++L+ I    GE  Q+ ++A AIV+RR++AP  T
Sbjct: 117 MEGELDMRMNPEQPLSAKEVVNGYSQEELSEIFFRYGELSQSRKLAQAIVQRRETAPIAT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL  ++QK  YF KN       + +QA+RI VN E+  L + L      +K  G + +
Sbjct: 177 TADLKEVVQK--YFPKNQENKHLAQLYQAIRIEVNQELSALEELLLQLPDIVKPMGRIAL 234

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDRL+K+F           +    +   P  F+ +  K ++PT E++A N R+R
Sbjct: 235 ISYHSLEDRLIKRFIRDGQFSGEPEKDFYGNIQVP--FRKV-GKPILPTAEEIARNNRAR 291

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 292 SAKLRVAERV 301


>gi|303327356|ref|ZP_07357797.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3]
 gi|302862296|gb|EFL85229.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3]
          Length = 328

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 116/326 (35%), Positives = 167/326 (51%), Gaps = 10/326 (3%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIA 63
            + M          HVPVL  + +  L P  G   LD T G GG++ +      GS +  
Sbjct: 2   AQVMQDTEERASTRHVPVLPAETLEALAPRAGGRYLDGTLGMGGHAAAVLSAAPGSELCG 61

Query: 64  LDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           LDRD  A+   +  +  +      F    + F++    +    VDG + D+GVSS+Q+D 
Sbjct: 62  LDRDEQALDLARARLAPFGGRAHFFHCRYSRFAEALKELQWDKVDGALLDIGVSSLQLDE 121

Query: 121 GDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF   GPLDMRM       SA   VN+ +   L   +  LGEE QA RIA  IV+
Sbjct: 122 NERGFSFYGDGPLDMRMDQHSGELSAWHWVNRESFARLKECIATLGEEPQAGRIARVIVE 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            RQ AP  +T +L++L++K    +   +   HPATR+FQALR+ VN+E+ EL + L    
Sbjct: 182 ARQKAPIDSTAELAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVP 295
             L  GG L V++FHSLEDR+VK+     +      RH  +    H    + + KK +  
Sbjct: 242 AWLPVGGRLAVITFHSLEDRMVKQAMRHWAEGCRCPRHVPVCVCRHQPEVRILHKKPLQA 301

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
             E++A N R+ SAKLRA  +  E +
Sbjct: 302 GSEELAVNPRAGSAKLRAVEKIAEAA 327


>gi|156973213|ref|YP_001444120.1| S-adenosyl-methyltransferase MraW [Vibrio harveyi ATCC BAA-1116]
 gi|263504515|sp|A7MWK7|RSMH_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156524807|gb|ABU69893.1| hypothetical protein VIBHAR_00894 [Vibrio harveyi ATCC BAA-1116]
          Length = 316

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 114/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAAKI---DDPRFTIIHGPFSGMAKYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R+    + 
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S   K +     PT++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|260881846|ref|ZP_05405354.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
 gi|260847818|gb|EEX67825.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
          Length = 330

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 110/319 (34%), Positives = 163/319 (51%), Gaps = 9/319 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H+ V+LE+ +  L      + +D T G  G+S            +I +D+D  A+   +E
Sbjct: 10  HISVMLEETVKGLVTNKEGIYVDCTLGGAGHSHRIAELLSPKGRIIGIDQDEEAIEAAKE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D K +  +  + FS L++         VDGVVFDLGVSS QID  +RGFS+    PL
Sbjct: 70  RLKDVKCRVDIVHSNFSHLEEILEAQGAPLVDGVVFDLGVSSHQIDTAERGFSYMHDAPL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN  + K+L RI    GEE+   RIA  IVK R   P + T +L 
Sbjct: 130 DMRMDPEAKFSAYDVVNTYSEKELDRIFHDYGEERWGRRIAQFIVKERMKKPIERTGELV 189

Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I K V  +       HPA R FQA+RI VN+E+  L +  R+A   LK GG + +++F
Sbjct: 190 DIICKAVPKAVRQAANGHPAKRIFQAIRIEVNDELGILEKAFRTAVHHLKPGGRIAIITF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+ K+     +   +    +     H      +  K    T +++A N RS+SAK
Sbjct: 250 HSLEDRIAKQTLKEMARGCICPPELPVCVCHHKPEIRLLGKPKQATADELAHNSRSKSAK 309

Query: 311 LRAGMRTVERSIEDDSFVH 329
           LR   +    + ++++   
Sbjct: 310 LRIAEKLATDNNQEETRKG 328


>gi|146299563|ref|YP_001194154.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101]
 gi|189082215|sp|A5FIX6|RSMH_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146153981|gb|ABQ04835.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101]
          Length = 302

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 166/312 (53%), Gaps = 17/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  T+  H PVLL   +  L+  P  + +D TFG GG+S+   +       + A D+D  
Sbjct: 1   MTTTMEYHNPVLLHPTVDGLDIKPDGIYVDVTFGGGGHSKEILRRLGPNGKLFAFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++          E+F+L    F  ++    +   K VDG++ DLGVSS Q D  +RGFS
Sbjct: 61  ALANA-----LPDERFTLINENFRFIKRFLRFHGIKAVDGILADLGVSSHQFDVPERGFS 115

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +    LDMRMS     +A  VVN+   +DL R+    GE K A  +A  IV+ R   P 
Sbjct: 116 TRFDAELDMRMSQKNDLNAYRVVNEYEEQDLRRVFFDYGELKNAPVLARTIVEARHHRPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT +L  +++K +     N+I    + +QA+RI VN E++ L + +  + + LK GG  
Sbjct: 176 KTTDELKEVLKKYLPEKVRNKI--LAQIYQAIRIEVNQEMDVLKEFIEQSLEILKPGGRF 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+F  +   +    R    + + P  F++I  K++VP  E++  N R
Sbjct: 234 SVISYHSLEDRLVKRFIKNGMFEGEPERDFYGNFSVP--FKTI-GKLIVPDDEEIKINNR 290

Query: 306 SRSAKLRAGMRT 317
           +RSAKLR   + 
Sbjct: 291 ARSAKLRIAEKI 302


>gi|309379057|emb|CBX22359.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 319

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/317 (37%), Positives = 167/317 (52%), Gaps = 11/317 (3%)

Query: 13  IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           +  T    H+ VLL + +  L      V +D TFG GG+SR           ++  D+DP
Sbjct: 1   MSETENYRHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDP 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            AV+  +E +    ++ S+    F+  Q  + D     VDG +FDLGVSS QID   RGF
Sbjct: 61  RAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGF 119

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P
Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ L  + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG 
Sbjct: 180 IDTTRKLAQLAAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303
           L V++FHSLEDR+VK+F    S      R      A  P     I  K + P   +VA N
Sbjct: 239 LAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAAN 298

Query: 304 RRSRSAKLRAGMRTVER 320
            R+RSA LR   RT   
Sbjct: 299 PRARSAVLRVAERTAGP 315


>gi|149190159|ref|ZP_01868435.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1]
 gi|148836048|gb|EDL53009.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1]
          Length = 316

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 162/317 (51%), Gaps = 18/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H+ VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SESFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
               +       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  EEAGKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---A 183
            K GPLDMRM  + G+  S+ + QA + D+T ++   GE+K A RIA AIV  R+     
Sbjct: 119 MKDGPLDMRMDPTSGMPVSEWLAQAELDDITWVIREFGEDKHARRIAKAIVAHREDEEKE 178

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T  L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G
Sbjct: 179 PLTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299
            L V+SFHSLEDR+VK+F    S        +  +                K + P+ ++
Sbjct: 239 RLSVISFHSLEDRMVKRFMRKESRGPQVPHGIPMTEDQIRALGSANLKTIGKALKPSDQE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N RSRS+ LR   +
Sbjct: 299 VEMNTRSRSSVLRVAEK 315


>gi|145635580|ref|ZP_01791278.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA]
 gi|229844915|ref|ZP_04465053.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1]
 gi|145267142|gb|EDK07148.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA]
 gi|229812296|gb|EEP47987.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1]
          Length = 320

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 170/323 (52%), Gaps = 17/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDR 66
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR          +IA+DR
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSNGRLIAVDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  +
Sbjct: 61  DPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEAE 117

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +
Sbjct: 118 RGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNK 177

Query: 182 SAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           SA    T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA 
Sbjct: 178 SAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSAL 237

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVV 294
             L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K + 
Sbjct: 238 DMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAIQ 297

Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317
           P+  ++  N RSRSA LR   R 
Sbjct: 298 PSDAEIQANPRSRSAILRVAERI 320


>gi|123441024|ref|YP_001005013.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|263504660|sp|A1JJI5|RSMH_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122087985|emb|CAL10773.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 320

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 19/323 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++        H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NNKTVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   +        +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +
Sbjct: 64  DPQAIEAAKSI---TDPRFSIVHGPFSDLAHYVRELNLVGRINGVLLDLGVSSPQLDDPE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDR+VK F    S        +  + A          +S+ K  ++P 
Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPP 297

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             +VA N R+RS+ LR   R  E
Sbjct: 298 DAEVAENPRARSSVLRFAERIKE 320


>gi|22299615|ref|NP_682862.1| putative methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|30173039|sp|Q8DH87|RSMH_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|22295799|dbj|BAC09624.1| tlr2072 [Thermosynechococcus elongatus BP-1]
          Length = 290

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 168/306 (54%), Gaps = 25/306 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
              H PVL   V+  L P  G + LDAT G GG++    +      V+A+D+DP A++  
Sbjct: 7   STYHQPVLAPAVLEALQPKAGGLYLDATVGGGGHTALLLRREPTCRVLAIDQDPMALAAA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           QE +  + ++   +   F+ L   V +   DG++ DLGVSS Q+D  +RGFSF+   PLD
Sbjct: 67  QEFLAPFGDRVQFWHGNFADLP--VAEPMFDGILADLGVSSAQLDRPERGFSFRFDAPLD 124

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ +   +A+ V+N  + ++L  I    GEE+ A RIA  IV RR   P   TQ+L+ 
Sbjct: 125 MRMNPANPLTAATVINHYSEQELADIFYEYGEERFARRIARQIVARR---PLNRTQELAQ 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           L+   +  S   RIHPATR FQALRI+VN E+  L Q L  +   LK  G + V+SFHSL
Sbjct: 182 LVAHCLKASPRQRIHPATRVFQALRIYVNQELAVLDQFLARSPHWLKPTGRIAVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK+ + +                   + + +T+K +V    +V+ N RSRSAKLR 
Sbjct: 242 EDRRVKQAWRAN-----------------PLLEVVTRKPIVADAVEVSLNPRSRSAKLRI 284

Query: 314 GMRTVE 319
            +RT  
Sbjct: 285 AVRTSA 290


>gi|313667806|ref|YP_004048090.1| s-adenosyl-l-methionine-dependent methyltransferase MraW [Neisseria
           lactamica ST-640]
 gi|313005268|emb|CBN86701.1| s-adenosyl-l-methionine-dependent methyltransferase MraW (ec
           2.1.1.-) [Neisseria lactamica 020-06]
          Length = 319

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/317 (37%), Positives = 167/317 (52%), Gaps = 11/317 (3%)

Query: 13  IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           +  T    H+ VLL + +  L      V +D TFG GG+SR           ++  D+DP
Sbjct: 1   MSETENYRHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDP 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            AV+  +E +    ++ S+    F+  Q  + D     VDG +FDLGVSS QID   RGF
Sbjct: 61  RAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGF 119

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P
Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ L  + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG 
Sbjct: 180 IDTTRKLAQLAAQNV-RTRECGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303
           L V++FHSLEDR+VK+F    S      R      A  P     I  K + P   +VA N
Sbjct: 239 LAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAAN 298

Query: 304 RRSRSAKLRAGMRTVER 320
            R+RSA LR   RT   
Sbjct: 299 PRARSAVLRVAERTAGP 315


>gi|315920696|ref|ZP_07916936.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694571|gb|EFS31406.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 309

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 8   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 68  -----ERNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +
Sbjct: 123 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 182

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 183 TIGEFLEVVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 298

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 299 RSAKLRIAEK 308


>gi|323699047|ref|ZP_08110959.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. ND132]
 gi|323458979|gb|EGB14844.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           ND132]
          Length = 326

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 116/318 (36%), Positives = 166/318 (52%), Gaps = 10/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M S        H  VLL +V+  L P PG   +D T G GG+S +  +    G+ ++ LD
Sbjct: 1   MKSGEVSPASLHTTVLLHEVVRWLQPRPGGRYMDGTLGMGGHSLALLEAAGEGAELVGLD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           RD  A++     +  +  +  LF   FS+ ++ + +   + +DG V DLGVSS+Q+D  D
Sbjct: 61  RDQEALALATRRLEPFAGRVHLFHLPFSRFEEALDEVGWERIDGAVLDLGVSSLQLDEAD 120

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF   GPLDMRM    G SA ++VN     +L RI+ + GE+  A +IA AIV+ R+
Sbjct: 121 RGFSFIHDGPLDMRMDPDSGPSAEELVNTLKHGELARIIRVYGEDPLAGKIASAIVRERE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
                 T  L+ +++        +  R HPATR+FQ LRI VN E EEL   L +    L
Sbjct: 181 KGAITRTLQLAEIVRLAYPPKMRHTARNHPATRTFQGLRIAVNRETEELEHYLATIVGRL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298
           K G  L ++SFHSLEDR VK  F   +       H +  +       + +T+K V  +  
Sbjct: 241 KPGARLAIISFHSLEDRAVKHAFRDAAKGCKCPPHQLHCTCGGVPEMKVLTRKPVAASDA 300

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RSAKLR   R
Sbjct: 301 ERDANPRARSAKLRVAER 318


>gi|68249679|ref|YP_248791.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 86-028NP]
 gi|148826257|ref|YP_001291010.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE]
 gi|229846161|ref|ZP_04466273.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1]
 gi|81335891|sp|Q4QLG6|RSMH_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456014|sp|A5UCX6|RSMH_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68057878|gb|AAX88131.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Haemophilus influenzae
           86-028NP]
 gi|148716417|gb|ABQ98627.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE]
 gi|229811165|gb|EEP46882.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1]
          Length = 321

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA   +T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|312888802|ref|ZP_07748365.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM
           18603]
 gi|311298677|gb|EFQ75783.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM
           18603]
          Length = 300

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PV+L + I  LN  P    +D TFG GG+SR   K       +IA D+D  A +
Sbjct: 1   MSNYHNPVMLAECIEGLNINPEGTYVDVTFGGGGHSREILKHLGPQGKLIAFDQDVDAQA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              +      E+F      F  L+++        VDG++ DLGVSS Q D  +RGFS + 
Sbjct: 61  NAID-----DERFVFVDQNFRYLKNFCRLHGAIPVDGILADLGVSSHQFDKAERGFSTRF 115

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  S   +A D+VN     DL RI G+ GE + A  +A  IV  R ++P  T 
Sbjct: 116 DADLDMRMDQSATQTAKDIVNTYAEADLHRIFGMYGEIQNAKTLARTIVTARLNSPINTI 175

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL   I   +   K N+     + FQALRI VN E+E L + L+   + L  GG L+V+
Sbjct: 176 ADLKGAIATLIPRGKENK--YLAQVFQALRIEVNQELEALQEFLKQTVEVLAPGGRLVVM 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK F A         + +  ++  P  F+++++K +  T++++  N R+RS
Sbjct: 234 SYHSLEDRLVKSFIAKGKFSGELEKDIYGNDDRP--FEAVSRKAITATEDEIKLNNRARS 291

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 292 AKLRIAVK 299


>gi|145639350|ref|ZP_01794956.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII]
 gi|145271653|gb|EDK11564.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII]
 gi|309751224|gb|ADO81208.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2866]
          Length = 321

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/324 (36%), Positives = 170/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          ++G++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|126663227|ref|ZP_01734225.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38]
 gi|126624885|gb|EAZ95575.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38]
          Length = 298

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 17/308 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVLL++ +  LN  P  V +D TFG GG+SR           + A D+D  A+  
Sbjct: 1   MEYHNPVLLKETVDGLNIRPDGVYVDVTFGGGGHSREIMSRLGENGKLFAFDQDLDALKN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                  Y E+F+L    F  ++    +   K VDG++ DLGVSS Q D  +RGFS +  
Sbjct: 61  A-----IYDERFTLINENFRFIKRFLRFHGIKQVDGILADLGVSSHQFDVAERGFSTRFD 115

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+  G  SA  VVN+ + ++++R+L   GE K A  +A+ IV  R+    + + 
Sbjct: 116 AELDMRMNQKGDISAYHVVNEYDEQEISRVLFNYGELKNARAMANVIVTARKDKEIRNSD 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  ++ K +   K N+I    + +QA+RI VN E+E L + L  + + LK GG L V+S
Sbjct: 176 QLKQVLAKFLPGHKANKI--LAQIYQAIRIEVNQEMEVLKEFLEQSLEILKPGGRLSVIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+F  +   +    R    +   P  F++I  K++VP++E++A N R+RSA
Sbjct: 234 YHSLEDRLVKRFVKNGMFEGEPERDFFGNFEVP--FKTIE-KLIVPSEEEIAINNRARSA 290

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 291 KLRVAEKI 298


>gi|319776629|ref|YP_004139117.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3047]
 gi|329124142|ref|ZP_08252689.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus aegyptius ATCC 11116]
 gi|317451220|emb|CBY87453.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3047]
 gi|327467567|gb|EGF13065.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus aegyptius ATCC 11116]
          Length = 321

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|81428357|ref|YP_395357.1| PutativeS-adenosylmethionine-dependent-methyltran sferase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|88909201|sp|Q38XN3|RSMH_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78609999|emb|CAI55047.1| PutativeS-adenosylmethionine-dependent-methyltransferase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 318

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/314 (31%), Positives = 173/314 (55%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL++ +  LN  P  + +DAT G GG+S          ++ + D+D  A+  
Sbjct: 3   ETFKHQSVLLKETVDALNVQPDGIYVDATLGGGGHSEYLLSQLTTGHLYSFDQDDHALES 62

Query: 74  GQETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ +  Y +  Q +  ++ F  L+  + ++    +DG+++DLGVSS Q D   RGFS++
Sbjct: 63  SRQRLAKYADAGQVTFIKSNFRFLKIALAEQGITKIDGILYDLGVSSPQFDDAQRGFSYK 122

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K  PLDMRM   + ++A  VVN+ + + L +I    GEEK + ++A  I ++R+ AP +T
Sbjct: 123 KEAPLDMRMDQGAELTAYTVVNEWSYQQLIKIFFRYGEEKFSKQVARKIEQQREIAPIET 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L+ LI++ +   ++    HPA R FQA+RI VN+E+  +   +  A   +K GG + 
Sbjct: 183 TIQLADLIKEAIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEDSVEQAIPLVKVGGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRR 305
           +++F SLEDRLVK  F  ++      + +         V + + +K ++PT++++  N R
Sbjct: 243 IITFQSLEDRLVKTMFKEQATLPDIPKGLPIMPGTEKTVLKLVNRKPILPTEDELTVNHR 302

Query: 306 SRSAKLRAGMRTVE 319
           + SAKLR   +  E
Sbjct: 303 AHSAKLRVAEKQKE 316


>gi|33151483|ref|NP_872836.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP]
 gi|42559455|sp|Q7VP62|RSMH_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33147703|gb|AAP95225.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP]
          Length = 313

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 172/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           ++ T   H+ VLL + +  L   P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MNETDHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSRLATNGRLIAIDRDPC 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + +          +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---SDARFQIIHTAFSAIPEVCESLGLMGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA++ + Q +++DL  +L   GEE+ A RIA A+V   ++  
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSIEDLAWVLKTFGEERFAKRIAQAVVSYNKTNS 177

Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + T+ L            K+   HPATRSFQA+RIF+N E++EL + L +A + L   G
Sbjct: 178 EKITRTLQLAKIIADAVPFKDKHKHPATRSFQAIRIFINRELDELEKALTNALRVLAPEG 237

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301
            L ++SFHSLEDR+VK+F    S   +  + +    +  +  +  +I  K ++P++ ++ 
Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGEVVPKGLPILEAELNKNIPLNIIGKAIMPSEAEIV 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   +
Sbjct: 298 ANARSRSAVLRIAAK 312


>gi|288800555|ref|ZP_06406013.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332768|gb|EFC71248.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 312

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 164/314 (52%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL + I  LN  PG + +D T G GG+S    K     +++ + D+D  
Sbjct: 2   VKTAETYHIPVLLNESIDGLNIQPGGIYVDVTMGGGGHSHEILKRLDVNAHLYSFDQDAD 61

Query: 70  AVSCGQETMRDY---KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           A +  ++   D     E+F+  ++ F  L++++       +DG++ DLGVSS   D   R
Sbjct: 62  AEANLKQNHGDDLLKDERFTFVRSNFRYLKNWMRYHGVEQIDGLLADLGVSSHHFDDESR 121

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+   PLDMRM+     +A+D+VN    + L  I  + GE K + +IA  +VK RQ 
Sbjct: 122 GFSFRFESPLDMRMNKRSSRTAADIVNNYAEEALADIFYLYGELKNSRKIASLLVKARQE 181

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              +TT D  ++++    F +        + FQALRI VN E+  L + L S    LK G
Sbjct: 182 KRIETTGDFIAVVEP--LFKREREKKDLAKLFQALRIEVNGEMSALKELLMSVVDMLKPG 239

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+++HSLEDR+VK    + + +    +        P  F+ I  KV+VPT E+   
Sbjct: 240 GRLSVITYHSLEDRIVKNIMKAGNIEGKIEQDFFGCINTP--FKLINNKVIVPTDEEQEQ 297

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   +
Sbjct: 298 NPRSRSAKLRIAEK 311


>gi|17230846|ref|NP_487394.1| S-adenosyl-methyltransferase MraW [Nostoc sp. PCC 7120]
 gi|20138995|sp|Q8YRT9|RSMH_ANASP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17132449|dbj|BAB75053.1| all3354 [Nostoc sp. PCC 7120]
          Length = 302

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 169/317 (53%), Gaps = 24/317 (7%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
            I   I  H+PVL ++VI  L   PG   LD T G GG+SR   +      + A+D+D  
Sbjct: 7   TIEEPIFSHLPVLPQEVITGLVVRPGGRYLDVTVGGGGHSRLILEAAPDVKLTAVDQDGD 66

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++ + ++ EQ    ++ F+      P    DGV+ DLGVSS  +D  +RGFSF+ 
Sbjct: 67  ALTAAKQELAEFGEQVKFVRSNFAAYD--FPSTSFDGVLADLGVSSYHLDTPERGFSFRH 124

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     +SA+DV+N  +  +L  I    GEE+ + RIA  IV++R      TT
Sbjct: 125 QASLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIVEKRPFH--TTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +   ++        +  RIHPATR FQALRI VN+E++ L   +  A KAL  GG + ++
Sbjct: 183 ELAEAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFIEKAPKALVPGGRIAII 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK    +                   + + +TKK ++ T +++A N RSRS
Sbjct: 243 SFHSLEDRLVKHGLRNS-----------------PLLKVLTKKPIIATDDEIANNPRSRS 285

Query: 309 AKLRAGMRTVERSIEDD 325
           AKLR   +  E   ED+
Sbjct: 286 AKLRIAEKQAETGDEDN 302


>gi|319897403|ref|YP_004135600.1| s-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3031]
 gi|317432909|emb|CBY81275.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3031]
          Length = 321

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSFNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA   +T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|329954177|ref|ZP_08295272.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056]
 gi|328528154|gb|EGF55134.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056]
          Length = 305

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 161/312 (51%), Gaps = 16/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREIVSRLGEGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A              F+  ++ F  L +++       VD V+ DLGVSS   D  +RGFS
Sbjct: 61  AEQN-----IVNDPHFTFVRSNFRYLHNFLRYHGIGQVDAVLADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G++A+D+VN  + + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARATRKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 GTIGEFLDIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV++P  +++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIIPDDDEIERNPR 291

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 292 SRSAKLRIAEKI 303


>gi|254460590|ref|ZP_05074006.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2083]
 gi|206677179|gb|EDZ41666.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 327

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 135/325 (41%), Positives = 191/325 (58%), Gaps = 6/325 (1%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFA 70
                   H+PVLL  ++   +P  G   LD TFGAGGY+R+    G++ VIA+DRDP A
Sbjct: 2   TQAAISAPHIPVLLGPILKAADPISGG-WLDGTFGAGGYTRALLDAGADSVIAVDRDPLA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               Q     Y  +    +  FS + ++  D  +DGVV DLGVSSMQ+D  +RGFSF + 
Sbjct: 61  FEMAQPWADQYGARLIQQRGVFSDMAEFAQD--LDGVVLDLGVSSMQLDRAERGFSFMRD 118

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN  + +++  IL   GEE+ + RIA AIV+ R   P  TT  
Sbjct: 119 GPLDMRMGQEGQSAADIVNDYDAEEIAEILYNYGEERASRRIARAIVELRAETPITTTLQ 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+K +   K  + HPATRSFQALRI VN+E  EL +GL +AE+AL  GGLL +V+F
Sbjct: 179 LAGLIEKCLPRKKPGQSHPATRSFQALRIAVNDEYGELYRGLMAAERALAPGGLLAIVTF 238

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HS+EDR+ K+F  SR+G            +     F+ +++K +  ++ ++  N R+RSA
Sbjct: 239 HSVEDRMAKRFLQSRAGTTGNANRFAPQLDVEKPAFELLSRKAITASEFELENNVRARSA 298

Query: 310 KLRAGMRTVERSIE-DDSFVHLPRL 333
           KLR   RT   + +     + +P L
Sbjct: 299 KLRLARRTDAHAGDIAPKTLGMPML 323


>gi|254426992|ref|ZP_05040699.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881]
 gi|196193161|gb|EDX88120.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881]
          Length = 312

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 167/313 (53%), Gaps = 8/313 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
              +T  +H PV+LE+V+ +         +D TFG GG+SR+          +  +DRDP
Sbjct: 2   TTENTQYEHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLARLDDNGRLAGIDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFS 126
            A++ GQE +     +F +    F  L   V    + +DG++ DLGVSS Q+D   RGFS
Sbjct: 62  QAIAAGQE-LAASDSRFHMVANRFDCLPQVVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM    G S ++ ++ A  KD+  +L   GEE+++  IA  I   R+  P 
Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSHAAEKDIANVLYRYGEERKSRWIAKRICDTRKEQPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L++LI+  +  ++  + HPATRSFQALRI +N E++ L Q L  + + L  GG L
Sbjct: 181 TRTLQLANLIESVLGRNEQGK-HPATRSFQALRIHINGELDALNQVLEQSLETLAIGGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++SFHSLEDR+VK F    SG+    R  +P             K +  ++ ++  N R
Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGNEMPQRLEPVGKAMRASKAELKVNVR 299

Query: 306 SRSAKLRAGMRTV 318
           SRSA LR   +  
Sbjct: 300 SRSAVLRVAEKVA 312


>gi|78356081|ref|YP_387530.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|88909199|sp|Q313R1|RSMH_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78218486|gb|ABB37835.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 325

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 170/314 (54%), Gaps = 11/314 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAV 71
           H    HVPVLL++V+  L+P  G   LD T G GG+S +     G +  ++ LDRD  A+
Sbjct: 12  HQYTAHVPVLLDEVLHYLSPVRGGRYLDGTLGLGGHSEAIMNRCGGDAWLLGLDRDREAL 71

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +     +  + ++ +   A +SQ    + +    G+DG + D+GVSSMQID   RGFSF 
Sbjct: 72  AAASGRLAPFGDRVTTRYACYSQFAAIMDEIGWTGLDGALIDIGVSSMQIDTPSRGFSFY 131

Query: 129 KSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             GPLDMRM  SG   SA  +VN  +V+ L  I+   GE+  A RIA AIV  R   P +
Sbjct: 132 ADGPLDMRMDPSGDMPSAGVLVNTGSVERLKEIISTYGEDPMAGRIARAIVDARARNPIE 191

Query: 187 TTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT  L+ +++         +   HPATR+FQALR+ VN E+EEL   L +    +  GG 
Sbjct: 192 TTARLAEVVESAYPAKWRAKSRNHPATRTFQALRMAVNGELEELETFLAAIVDRMNPGGR 251

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++V++FHSLEDRLVK  F   +   +  RH+             +T+K V   Q ++  N
Sbjct: 252 IVVITFHSLEDRLVKNAFRDEAKGCLCPRHIPVCVCGKKPRVNVLTRKPVTAGQAELQAN 311

Query: 304 RRSRSAKLRAGMRT 317
            R+ SAKLRA  R 
Sbjct: 312 SRASSAKLRAAERI 325


>gi|281421043|ref|ZP_06252042.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205]
 gi|281404961|gb|EFB35641.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205]
          Length = 304

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 16/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           I      HVPVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D  
Sbjct: 2   IKTAETYHVPVLLKESVDGLNIQPGGIYVDVTFGGGGHSREILSRLTEGAHLYSFDQDAD 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A     E      E F+   + F  L++++   GV   DG++ DLGVSS   D   RGFS
Sbjct: 62  A-----ERNVVANENFTFVCSNFRFLKNWMRYYGVDGLDGLLADLGVSSHHFDDETRGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM+   G +A+D+VN+ +   L  I  + GE K + RIA A+VK R   P 
Sbjct: 117 FRFDSPLDMRMNKRAGKTAADIVNEYDEGALADIFYLYGELKNSRRIASALVKARAEKPI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+D  + ++    F +        + FQALRI VN+E++ L + LRSA   LK GG L
Sbjct: 177 LTTKDFMAAVEP--LFKREREKKDMAKLFQALRIEVNHEMDALKEMLRSATALLKPGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+++HSLEDR+VK    + + +    +        P  F+ +  KV+VP  ++   N R
Sbjct: 235 SVITYHSLEDRIVKNMMKAGNAEGKIEQDFFGRIETP--FKLVNNKVIVPDADEQERNPR 292

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   +
Sbjct: 293 SRSAKLRIAEK 303


>gi|288818267|ref|YP_003432615.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288787667|dbj|BAI69414.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308751864|gb|ADO45347.1| S-adenosyl-methyltransferase MraW [Hydrogenobacter thermophilus
           TK-6]
          Length = 287

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 130/305 (42%), Positives = 180/305 (59%), Gaps = 24/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVLL++ + LL    G V +DAT G GG+++   +      VI +DRDP A+   +E
Sbjct: 1   MHIPVLLKESVDLLVWRTGGVYVDATVGLGGHTKGILERDPRAFVIGIDRDPHALKLAEE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D++ +F L+QA F  L + +     K VDG +FDLGVS +Q+    RGFSFQ+  PL
Sbjct: 61  NLKDFEGRFCLYQANFRYLDEVLKQEGIKEVDGFLFDLGVSMLQLKS-PRGFSFQRDEPL 119

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A  V+N  + +DL RIL   GEE  ASRIA AIV  R   P +TT +L 
Sbjct: 120 DMRMNPEDKKTAYQVINTYSERDLVRILKEYGEEPNASRIARAIVMHRTKKPIETTGELV 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I   +   +  R+HPATR FQA+RI VN E+  L + L    + LK GG L+V+SFHS
Sbjct: 180 SIITSLI-PYRRGRVHPATRIFQAIRIEVNEELISLEEALEKTPRFLKKGGRLVVISFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK FF   +                 +F+ +TKK + PT +++  N  SRSAKLR
Sbjct: 239 LEDRIVKNFFKRHTD----------------IFKLLTKKPIRPTLQEMKKNPASRSAKLR 282

Query: 313 AGMRT 317
           AG R 
Sbjct: 283 AGERI 287


>gi|300722051|ref|YP_003711331.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297628548|emb|CBJ89120.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 314

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 122/320 (38%), Positives = 177/320 (55%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP 
Sbjct: 1   MANSHFKHTSVLLDEAVNGLNIQEDGIYIDGTFGRGGHSRLILSKLGPNGRLMAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   +       E+FS+    FS+L  YV D      ++GV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIEASKAI---TDERFSITHGPFSELATYVEDADLVGKINGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G SAS+ + +A  +D+  +L   GEE+ A RIA AIV R Q  P
Sbjct: 118 SFMRDGPLDMRMDPTRGQSASEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVARSQEQP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T++L+ LI +     K    HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 178 MTRTRELAELIAQA-SPIKEKHKHPATRSFQAIRIYINSELEEIERALDGALRVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  + A          + I K  + P+ ++
Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSQGPQVPAGLPLTEAQLKAMGGRSLKFIGK--MKPSGDE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   +  E
Sbjct: 295 VATNPRARSSVLRFAEKADE 314


>gi|29348864|ref|NP_812367.1| S-adenosyl-methyltransferase MraW [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568789|ref|ZP_04846199.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6]
 gi|298387947|ref|ZP_06997496.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14]
 gi|42558980|sp|Q8A251|RSMH_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29340770|gb|AAO78561.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840808|gb|EES68889.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6]
 gi|298259354|gb|EFI02229.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14]
          Length = 304

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 163/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 3   KDELTYHVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFTFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D+VN    + L  I  + GE K + ++A AIVK R     +
Sbjct: 118 RFDGALDMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIR 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLAAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|303240801|ref|ZP_07327314.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2]
 gi|302591689|gb|EFL61424.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2]
          Length = 313

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H PVL E+ I  L+  P  V +D T G  G+S +  +       +I LD+D FA+   +
Sbjct: 4   EHKPVLFEECIENLDIKPDGVYVDGTLGGAGHSSAIYQKLGEKGMLIGLDQDGFALETSK 63

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
           + + D   +         F  ++    +  +     ++ DLGVSS Q+D  +RGFS+ K 
Sbjct: 64  KRLEDQNGKGSLIFANTNFVNIKSVCFENKIACVDGILLDLGVSSHQLDEAERGFSYNKD 123

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A  +VN+ + +++ +I+   GEE  ASRIA  IV+RR     +TT 
Sbjct: 124 APLDMRMDRRQKFTAETIVNEYSKEEIKKIIREFGEENWASRIAEFIVQRRDEKRIETTG 183

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +  S +    HPA R+FQALRI VN+E+  L++ +      LK GG   ++
Sbjct: 184 ELVEIIKAAIPSSARREGPHPAKRTFQALRIAVNDELGILSKAIEEGVNLLKPGGRFCII 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F              +       + +S+ +K +VP+ +++  N R+R
Sbjct: 244 TFHSLEDRIVKNEFNKYINPCTCPSTFPVCVCGKKKLAESVHRKPIVPSVKELEENPRAR 303

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 304 SAKLRVLEK 312


>gi|160883877|ref|ZP_02064880.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483]
 gi|156110607|gb|EDO12352.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483]
          Length = 309

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 8   KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 68  -----ERNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +
Sbjct: 123 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 182

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 183 TIGEFLEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 298

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 299 RSAKLRIAEK 308


>gi|108757260|ref|YP_633751.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622]
 gi|122980788|sp|Q1D0S2|RSMH_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108461140|gb|ABF86325.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622]
          Length = 304

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 167/306 (54%), Gaps = 6/306 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           +  +   H  VLL + + LL PA G+VI+D T G GG+S +    G+ V+ +DRDP A++
Sbjct: 1   MTASDFQHQTVLLREAVDLLRPADGRVIIDGTLGGGGHSEALLASGATVVGVDRDPVALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +     +F      F++L     D   VDGV+ DLGVSS Q+D  +RGFSF K G
Sbjct: 61  AATARLGA-NPRFQGRAGNFAELPRVAADLLPVDGVLVDLGVSSPQLDVAERGFSFSKDG 119

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM   G +A++++   + ++L RIL   GEE  A  IA  + K     P +T +  
Sbjct: 120 PLDMRMGPDGPTAAELIATTDERELVRILKDYGEEPFARPIARELKKAL---PTRTLEAA 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             + +     +  NRIH ATR+FQALR+ VN E+E L   L +    LK GG   V++FH
Sbjct: 177 EVVKRAVPRKAWPNRIHVATRTFQALRMAVNGELEALDALLAAIPGLLKVGGRAAVIAFH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + +G+      +     +    F  +TKK V  ++ +V  N RSRSA 
Sbjct: 237 SLEDRKVKEAFRALAGRCTCPPGLPVCVCSGVGDFALVTKKAVAASEAEVEANPRSRSAH 296

Query: 311 LRAGMR 316
           LR   +
Sbjct: 297 LRVVEK 302


>gi|46580916|ref|YP_011724.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601783|ref|YP_966183.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4]
 gi|50402222|sp|P62470|RSMH_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446337|sp|A1VBE0|RSMH_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46450336|gb|AAS96984.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562012|gb|ABM27756.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4]
 gi|311234607|gb|ADP87461.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris RCH1]
          Length = 323

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 120/327 (36%), Positives = 173/327 (52%), Gaps = 14/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--- 57
           M     + M++        H+PVLLE+V+  L P  G   LD T G  G++ +  +    
Sbjct: 1   MSEHP-ENMTA---PEWAAHIPVLLEEVLEYLAPRKGGRYLDGTLGLAGHASAVLERAGE 56

Query: 58  GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVS 114
           G+ +  LDRDP A+      +  +  Q  L+   +S+ ++ + D     VDG + D+GVS
Sbjct: 57  GTELCGLDRDPEALRRATARLAPFAGQTHLYHLRYSEFEEALDDLGWPTVDGALIDIGVS 116

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQID  +RGFSF   GPLDMRM      SA  +VN+   + L  I+   GEE  A RIA
Sbjct: 117 SMQIDLAERGFSFHADGPLDMRMDPDAHESAWRLVNRERHEVLRDIIARYGEEPMAGRIA 176

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQG 231
            AIV  R +    TT  L++++++          R HPATR+FQALR+ VN+E+ EL + 
Sbjct: 177 RAIVDARNTGSIDTTLQLAAIVERAYPAKWRATARNHPATRTFQALRMAVNDELGELERF 236

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITK 290
           L +    L  GG L+V+SFHSLEDR+VK      +      RH+      H    + +TK
Sbjct: 237 LDAILARLAPGGRLVVISFHSLEDRIVKHRMRHWAEGCRCPRHVPRCVCGHSPEVRILTK 296

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           + V  T  ++A N R+ SAKLRA  + 
Sbjct: 297 RPVTATDGELARNPRASSAKLRAAEKV 323


>gi|329117643|ref|ZP_08246360.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD
           2020]
 gi|326908048|gb|EGE54962.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD
           2020]
          Length = 316

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +LN  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HITVLLNETVDMLNVKPDGIYVDATLGGAGHSAYLLSQLNENGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLKPFIDKGQVTFIKDNFRNLKSRLASLGVTEIDGILYDLGVSSPQLDERERGFSYRQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A  VVN     DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMDTEAELTAYQVVNHYAFNDLVRIFFRYGEDKFSKQIARKIEQAREIKPIETTAE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESIQQAMDILALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +     I        F+ +++K ++P+ E++  N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKNIPIIPEHLQPKFELVSRKPILPSLEELEANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKI 314


>gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
 gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
          Length = 305

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 5/306 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           +  HVPVL  + +  L P+ G + LD TFG GG++    +     V+ALD+DP AV+   
Sbjct: 1   MEGHVPVLAAETLEHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAA 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E    Y ++    +  F  L     +   DG++FD GVSS Q+D  DRGFSF+   PLDM
Sbjct: 61  ELKERYGDRLRFHRMNFETLDQLE-EGPFDGILFDFGVSSFQLDEVDRGFSFRGEAPLDM 119

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    G+SA+  +  A+  DL R +    EEK   +I +AI+  R+     TT  L+ L
Sbjct: 120 RMDPESGVSAAQWLATADQADLLRAIRGYAEEKNWRKIVNAILAAREKNELSTTTQLADL 179

Query: 195 IQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           I          N+++HPAT+ FQ +RI +N+EI  + +GL +A   LK GG+L  +SFHS
Sbjct: 180 ILSCTPARVRFNSKLHPATKVFQGIRIAINDEIGVIERGLPAAFDKLKTGGILCAISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+ K  +   +G+    R   P +      + + K+ +  + ++VA N RSRSAKLR
Sbjct: 240 LEDRVAKVLYRRWAGRPEGSRDNRPQDMRVTRAELLGKRPITASDKEVAVNPRSRSAKLR 299

Query: 313 AGMRTV 318
              +  
Sbjct: 300 VLKKIK 305


>gi|301063241|ref|ZP_07203790.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2]
 gi|300442669|gb|EFK06885.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2]
          Length = 341

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 10/326 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-- 59
           +    +T    I  +   HVPVLL++ +  LN  P  + +D T G+GG+S          
Sbjct: 16  KPGPSRTADLKIQTSNYPHVPVLLQEAVRYLNLKPEGIYVDGTVGSGGHSMEILSHLPEN 75

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115
            +++ LD+DP A+   ++ +R    +     A F+ L   + D     +DG++ DLG+SS
Sbjct: 76  SSLVCLDQDPDAIRLSRKRLRS-DNRVQFIHANFADLGRVMQDLAINRIDGILLDLGMSS 134

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISA-SDVVNQANVKDLTRILGILGEEKQASRIAH 174
            QI+   RGFSF +  PLDMRM+        D++N  +++ L  +L   GEE++   +A 
Sbjct: 135 YQIEKSGRGFSFSREEPLDMRMNPDHKPTGMDLINSLSLESLQALLREYGEEQKFKTLAR 194

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           AIV+ R+    +T   L+ +I++      +  + HPAT++FQA+RI +N E+E L   L+
Sbjct: 195 AIVRARERETIKTASQLAHIIEEATPKSHRPWKRHPATKTFQAVRIAINKEMESLETFLQ 254

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKV 292
                +  GG L+V+S+HSLEDR +K+                  +     +F+ + K+ 
Sbjct: 255 EIPSLMAVGGRLVVISYHSLEDRQIKRAMVQWEKTCTCPPDFPVCACQKTRIFKRVFKRG 314

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTV 318
           + P + ++ FN R+RSA +R   R  
Sbjct: 315 LKPDEREIHFNPRARSAIMRVAERIS 340


>gi|238791165|ref|ZP_04634804.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           intermedia ATCC 29909]
 gi|238729298|gb|EEQ20813.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           intermedia ATCC 29909]
          Length = 320

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 118/321 (36%), Positives = 173/321 (53%), Gaps = 15/321 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++ I      H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NNKIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   +        +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +
Sbjct: 64  DPQAIEAAKSI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQE 298
            G L V+SFHSLEDR+VK F    S        +  + A           +   ++P   
Sbjct: 240 AGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDA 299

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +VA N R+RS+ LR   R  E
Sbjct: 300 EVAENPRARSSVLRFAERIKE 320


>gi|322834428|ref|YP_004214455.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602]
 gi|321169629|gb|ADW75328.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602]
          Length = 313

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 19/317 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A+ 
Sbjct: 3   ENYKHTSVLLDEAVNGLNIRQDGIYIDGTFGRGGHSRLILSQLGPDGRLLAIDRDPQAIK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L DYV D+     +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAESI---DDPRFSIVHGPFSDLADYVRDRGLEGKIDGVLLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGYSATEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRELPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V
Sbjct: 180 TKELADLIANA-SPVREKHKHPATRSFQAIRIYINSELEEIERALDGALEILAPEGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  + A  A       +S+ K  ++P++ +VA 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGAQVPAGIPMTEAQIAELGGRSLKSVGK--MMPSEAEVAE 296

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   RT  
Sbjct: 297 NPRARSSVLRFAERTTA 313


>gi|262066020|ref|ZP_06025632.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC
           33693]
 gi|291380270|gb|EFE87788.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC
           33693]
          Length = 314

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y  ++ + +  F  +           VDG++ D+GVSS Q+D  +RGFS++    
Sbjct: 68  KRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVK 127

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA DVVN  + ++L+RI+   GEE+ A +IA  I + R++ P  TT +L
Sbjct: 128 LDMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKTKPITTTFEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 VALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ IT+K ++P ++++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICICGGVKKFEVITRKPIIPVEDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|260642625|ref|ZP_05416656.2| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM
           17565]
 gi|260621294|gb|EEX44165.1| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM
           17565]
          Length = 309

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 160/310 (51%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              +  HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A
Sbjct: 8   KDELTYHVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF
Sbjct: 68  -----ERNIVDDPHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   G++A+D+VN    + L  I  + GE K + ++A  IVK R     +
Sbjct: 123 RFDGDLDMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASVIVKARNGQAIR 182

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 183 TIGEFLEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RS
Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLNTP--FRLVNNKVIVPDETEIERNPRS 298

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 299 RSAKLRIAEK 308


>gi|261881137|ref|ZP_06007564.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella bergensis DSM 17361]
 gi|270332142|gb|EFA42928.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella bergensis DSM 17361]
          Length = 337

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 18/308 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC-- 73
            HVPVLL++ +  L+  P    +D TFG GG+SR          ++ + D+D  A     
Sbjct: 37  YHVPVLLKESVDGLDIKPDGTYVDVTFGGGGHSREILSRLHQDGHLYSFDQDADAEQNLS 96

Query: 74  -GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129
              ET+    + F+  ++ F  L++++   GV+ +   + DLGVSS   D   RGFSF+ 
Sbjct: 97  GSGETL----DNFTFVRSNFRYLKNWMRYYGVEHIDGLLADLGVSSHHFDDEARGFSFRF 152

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+   G +A+DVVN    + L  I  + GE K + RIA  +VK R      TT
Sbjct: 153 DAPLDMRMNKRGGQTAADVVNNYEEEQLADIFYLYGELKSSRRIASVLVKERNQGKILTT 212

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           QD  + +Q      +  +     + FQALRI VN E+  L + L +A   L  GG L V+
Sbjct: 213 QDFVNAVQPLFRRGREKK--DMAKLFQALRIEVNQEMAALREMLTAATDLLAPGGRLSVI 270

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +    +        P  F+ +  KV+VP+ E++A N RSRS
Sbjct: 271 TYHSLEDRMVKNMMKTGNAEGKLRQDFFGRVECP--FRLVNNKVIVPSDEELARNPRSRS 328

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 329 AKLRIAEK 336


>gi|16273056|ref|NP_439288.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae Rd KW20]
 gi|145630229|ref|ZP_01786011.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021]
 gi|260580214|ref|ZP_05848044.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW]
 gi|260581821|ref|ZP_05849617.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127]
 gi|1175483|sp|P45057|RSMH_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144984510|gb|EDJ91933.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021]
 gi|260093498|gb|EEW77431.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW]
 gi|260095014|gb|EEW78906.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127]
          Length = 321

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|116513827|ref|YP_812733.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093142|gb|ABJ58295.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 305

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 12/303 (3%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE-----TM 78
            + I  L P  G   +DATFG GG++R   +     N+I  D+D +A+   Q        
Sbjct: 2   HETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSNFAAFLK 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++    LDM
Sbjct: 62  EDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLDM 121

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM       A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +TT +L  +
Sbjct: 122 RMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETTFELVEI 181

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I++ +  + +    HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V++F SL
Sbjct: 182 IKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISVITFQSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           ED++VK+ F   S   +     +         + + +K +  ++E++A N RS SAKLR 
Sbjct: 242 EDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAENNRSHSAKLRV 301

Query: 314 GMR 316
             +
Sbjct: 302 AEK 304


>gi|191638270|ref|YP_001987436.1| S-adenosyl-methyltransferase MraW [Lactobacillus casei BL23]
 gi|239631645|ref|ZP_04674676.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066319|ref|YP_003788342.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei str. Zhang]
 gi|263456244|sp|B3WDX7|RSMH_LACCB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190712572|emb|CAQ66578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus casei BL23]
 gi|239526110|gb|EEQ65111.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300438726|gb|ADK18492.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei str. Zhang]
 gi|327382302|gb|AEA53778.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           casei LC2W]
 gi|327385497|gb|AEA56971.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           casei BD-II]
          Length = 313

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 157/312 (50%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L   P  + +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKPAGIYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    +Q +L    F  L D +       VDG+++DLGVSS Q D   RGFS++  
Sbjct: 62  VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    DL RI    GEE  + +IA  I + R   P  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F   S      R +    A     ++ + +K ++P++E++A N R+ 
Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPNYRLVNRKPILPSEEELAVNHRAH 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  +
Sbjct: 302 SAKLRVIEKIHD 313


>gi|332712413|ref|ZP_08432340.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L]
 gi|332348887|gb|EGJ28500.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L]
          Length = 304

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 20/306 (6%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           + T   HV VL +++I  L   PG   LDAT G GG++        +  V A+DRD  A+
Sbjct: 9   NTTPFFHVSVLSQELIEGLAICPGGHYLDATVGGGGHTELILAAAPDVEVTAIDRDANAI 68

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  Y  + + +Q  F++ Q    D+  DG++ DLGVSS Q+D  +RGFSF+ + 
Sbjct: 69  AAAKTRLASYNGRVNFWQGNFAEYQ--PNDRVFDGIIADLGVSSAQLDLPERGFSFRHAA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A D++N      L  +    GEE+ + R+A  IV+  +     TT+ 
Sbjct: 127 QLDMRMDQSQSLTAKDIINNWGEVRLADVFYKYGEERLSRRMARRIVE--KRPFQTTTEL 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +++        +  RIHPATR FQALRI VN E+E L   L  A   LK GG L ++SF
Sbjct: 185 ANAIASCVPPKYRYGRIHPATRVFQALRIVVNQELESLESFLDIAPHWLKPGGRLGIISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK  F   S                 + + +TKK  V   E++  N R+RSAK
Sbjct: 245 HSLEDRIVKHKFRELSTNCS-------------LLRVLTKKPTVAQAEEIQHNPRARSAK 291

Query: 311 LRAGMR 316
           LR   R
Sbjct: 292 LRFAER 297


>gi|320527513|ref|ZP_08028693.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204]
 gi|320132070|gb|EFW24620.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204]
          Length = 311

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 158/309 (51%), Gaps = 9/309 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ +  LN     + +D T G GG+S          ++ A D+D  A++   E 
Sbjct: 3   HTSVLLKETVDSLNVKEDGIYVDGTLGRGGHSGYLISKLKSGHLYAFDKDSQAIAESTEN 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D     ++    F  +++ +       V+G++ DLGVSS Q D   RGFS++    LD
Sbjct: 63  LKDVLPYITMIHNDFRSMKEELAKRGIYEVNGIMMDLGVSSPQFDDPTRGFSYRYDARLD 122

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+      A  VVN  + ++L RIL   GEEK    IA AI K+R   P +TT  L  
Sbjct: 123 MRMNQEQELDAYQVVNTYSFEELCRILREYGEEKFTKSIARAIEKQRAIQPIETTFQLVD 182

Query: 194 LIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +       + HPA ++FQALRI VN+E+  L +GL  A   LK  G   +++FHS
Sbjct: 183 VIKSALPDKVLRQKGHPAKQTFQALRIEVNDELGALQKGLEEALSILKPNGRCAIITFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F   S        +    S+   A +  ITKK +  T E++  N RS SAK
Sbjct: 243 LEDRMVKNVFKEYSSAPYIDPRIPIKASDIKQADYNLITKKPITATDEELDENHRSHSAK 302

Query: 311 LRAGMRTVE 319
           LR   +  E
Sbjct: 303 LRVIEKKGE 311


>gi|256846968|ref|ZP_05552414.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715632|gb|EEU30607.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 313

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 167/309 (54%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL + +A LN  P    +DAT G GG+S        G ++ A D+D  A+   QE 
Sbjct: 5   HVTVLLHEAVAGLNVQPDGQYVDATLGGGGHSGLILSKLHGGHLYAFDQDRTAIEYNQEH 64

Query: 78  MRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + DY  + Q +  +  F  LQ   + +    VDG+V+DLGVSS Q D G RGFS+Q    
Sbjct: 65  LADYLARHQLTFIKDNFKNLQVDLNKLGVTKVDGIVYDLGVSSPQFDDGQRGFSYQHDAK 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA ++VNQ     L +IL   GEEK A  IA AI + R+  P  TT +L
Sbjct: 125 LDMRMNQEQSLSAYEIVNQWPYDRLVKILYRYGEEKFAKSIARAIERHREERPITTTFEL 184

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA ++FQA+RI VN+E+  L   L  A + L  GG + V++F
Sbjct: 185 VDVIKEAIPARARRHGGHPAKKTFQAIRIAVNDELGVLEASLEQAFEMLNVGGRISVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDRLVK  F  R+          +        F+ + +K + P+ +++A N R+ SA
Sbjct: 245 QSLEDRLVKTMFRERTTLKDVPAGLPVIPKEQQPDFKLVNRKAIEPSPQELASNHRAHSA 304

Query: 310 KLRAGMRTV 318
            LR   +  
Sbjct: 305 HLRVIEKVK 313


>gi|332638186|ref|ZP_08417049.1| 16S rRNA m(4)C1402 methyltranserfase [Weissella cibaria KACC 11862]
          Length = 314

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 172/311 (55%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T  +HV VLL + I  LN  P  V +DAT G GG+S+          + + D+D  A++ 
Sbjct: 2   TEFNHVTVLLNEAIDNLNVKPDGVYVDATLGGGGHSQLLASRLTTGKLWSFDQDITAINY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             E +       + +  Q  F  L+  + +     +DG+V+DLGVSS Q D G RGFS+ 
Sbjct: 62  NTEHLAAELAAGKVAFIQNNFRNLKAALAEVGVTEIDGIVYDLGVSSPQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM  S   +A  VVN+ +  DL RIL   GEEK A +IA AI ++R   P +T
Sbjct: 122 YDAPLDMRMDQSQELNARTVVNEWDFHDLLRILSRYGEEKFAKQIARAIERQRAIKPIET 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +   ++    HPA RSFQA+RI VN+E+  + + L  A   LK GG + 
Sbjct: 182 TFELVEVIKSAIPAAARRTGGHPAKRSFQAIRIAVNDELGVVEESLAQALDMLKVGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDRLVK  F  ++          I  +     F+ +++K ++P++E++A N R
Sbjct: 242 VITFHSLEDRLVKTMFKEKTALPEVPAGLPIIPDEMQPDFKLVSRKPILPSEEEMAENHR 301

Query: 306 SRSAKLRAGMR 316
           + SAKLR   R
Sbjct: 302 AHSAKLRVIER 312


>gi|237738955|ref|ZP_04569436.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31]
 gi|229423555|gb|EEO38602.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31]
          Length = 320

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   +
Sbjct: 14  YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSK 73

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y  ++ + +  F  +           VDG++ D+GVSS Q+D  +RGFS++    
Sbjct: 74  KRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVK 133

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA DVVN  + ++L+RI+   GEE+ A +IA  I + R+  P  TT +L
Sbjct: 134 LDMRMNTDQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFEL 193

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 194 VALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFH 251

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ IT+K ++P ++++  N R+ S+K
Sbjct: 252 SLEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIPVEDELKNNNRAHSSK 311

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 312 LRILERI 318


>gi|282878018|ref|ZP_06286826.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310]
 gi|281299853|gb|EFA92214.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310]
          Length = 312

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 160/314 (50%), Gaps = 13/314 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           +I      HVPVLL++ +  LN  P  + +D TFG GG+S    +      ++ + D+D 
Sbjct: 2   SIKTAETYHVPVLLQESVEGLNIQPDGIYVDVTFGGGGHSMQILRQLGENGHLFSFDQDL 61

Query: 69  FAVSC----GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
            A       G E ++     F      +      Y   + +DG++ DLGVSS   D   R
Sbjct: 62  DAEKNIPQAGNELLQQDNFTFVRSNFRYLKNWMRYYEIEQIDGLLADLGVSSHHFDDESR 121

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+   PLDMRM+ +  I+A+DVVN  + + L  +  + GE K A RIA  +VK R  
Sbjct: 122 GFSFRFDAPLDMRMNKTASITAADVVNTYSEERLADVFYLYGELKNARRIASLLVKARTE 181

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               TTQD   +      F +        + FQALRI VN+E+E L + L  A++ L+ G
Sbjct: 182 EMIVTTQDF--IQATAPLFKREREKKDMAKLFQALRIEVNHEMESLKEMLEGAKQLLRPG 239

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+++HSLEDR+VK    + + +    +        P  F  I KKV+VP +++   
Sbjct: 240 GRLSVITYHSLEDRIVKNMMKTGNVEGKMTQDFFGKITTP--FSLINKKVIVPAEDEQQR 297

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   +
Sbjct: 298 NPRSRSAKLRIAEK 311


>gi|77919804|ref|YP_357619.1| S-adenosylmethionine-dependent methyltransferase [Pelobacter
           carbinolicus DSM 2380]
 gi|88909207|sp|Q3A2F8|RSMH_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77545887|gb|ABA89449.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 314

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 175/313 (55%), Gaps = 9/313 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +   +  H  V+ E+V+  L P PG+V +D T G GG++R   +       ++ LDRD  
Sbjct: 1   MTREVFQHSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDRE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  + E+  L    F+     + +     VDG++ DLGVSS Q+D   RGFS
Sbjct: 61  ALEEAGRQLASFGERVLLRHGNFADATRILAELDIATVDGILLDLGVSSFQLDTARRGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           FQ   PLDMRM  S G++A+DVVN  + ++L RI    GEE+ A RIA  I K R   P 
Sbjct: 121 FQSDAPLDMRMDTSAGMTAADVVNALSPEELARIFREYGEERYARRIARRIEKVRADEPL 180

Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT+ L+ L++  V      +RIHPATR FQALRI VN E++ L +GLR +   LK GG 
Sbjct: 181 MTTRQLAELVRDAVPGGHVPSRIHPATRVFQALRIHVNAELDSLREGLRRSLALLKPGGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+SFHSLEDR+VK+FF S     +      I +         +T+K +  ++ ++A N
Sbjct: 241 MAVISFHSLEDRIVKQFFRSEVQTCICPPGLPICACNRKPGVALLTRKGLKASESEIAAN 300

Query: 304 RRSRSAKLRAGMR 316
            R+RSA LRA  R
Sbjct: 301 PRARSAVLRAIRR 313


>gi|153874645|ref|ZP_02002785.1| Bacterial methyltransferase [Beggiatoa sp. PS]
 gi|152068890|gb|EDN67214.1| Bacterial methyltransferase [Beggiatoa sp. PS]
          Length = 339

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 24/332 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           S++   +  +H PVLL + +  L      + +D TFG GG++++          V+A D+
Sbjct: 3   SNSKSLSQNEHQPVLLAEALKALTIYDDSIYIDCTFGRGGHTKAILNDLGPSGQVLAFDQ 62

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGD 122
           DP AV   +  +     +F++  + F+QLQ  V  +     V+GV+ DLGVSS Q++   
Sbjct: 63  DPEAVQIAKA-LCLTDNRFNIIYSPFTQLQQQVEKRGWLGQVNGVLLDLGVSSPQLNTPT 121

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF   GPLDMRM+ + G S  + +NQA+  ++  +L   GEE+ A  IA AIV  R 
Sbjct: 122 RGFSFMHDGPLDMRMNPNSGTSIGEWLNQADTDEIALVLKTYGEERHARHIAKAIVMARS 181

Query: 182 SAPFQTTQDLSSLIQKT---------------VYFSKNNRIHPATRSFQALRIFVNNEIE 226
            A  +TT  L+ +I                   + ++    HPAT++FQALRIF+N+E+E
Sbjct: 182 KAELKTTCQLAEIISAVSIPYPKKMAHSSSSLKWGTQKKFKHPATQTFQALRIFINHELE 241

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
           +L Q L  A   L  GG L+V+SFHSLEDR+VK+F             M  +    +   
Sbjct: 242 QLQQVLPQALDVLAPGGRLVVISFHSLEDRIVKRFIRDCVRGDDFPPTMPITADQLSPSL 301

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
               K + PT  +   N R+RSA +R   +  
Sbjct: 302 LAIGKPIKPTLAETQANPRARSAIMRVAEKIK 333


>gi|159027563|emb|CAO86934.1| MraW [Microcystis aeruginosa PCC 7806]
          Length = 293

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 25/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LD T G GG+SR   +      V A+DRD  A+   + +
Sbjct: 7   HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKIS 66

Query: 78  MRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  Y   + +L+   F+  +    +   DG++ DLGVSS Q D  +RGFSF+ +  LDMR
Sbjct: 67  LAPYLDSRLTLWWGNFADYK--GQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMR 124

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  C  ++A+D++N    K+L  +    GEE+ +  IA +IV+  +     TT+  + + 
Sbjct: 125 MDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQ--KRPFTTTTELAAVIA 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +  RIHPATR FQ+LRI VN E++ L + L  A + LK+GG++ ++SFHSLED
Sbjct: 183 SSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPQWLKSGGIIAMISFHSLED 242

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RL+K  F                       + ITKK ++P++E+ A N RSRSAKLR   
Sbjct: 243 RLIKYGFRE-----------------DNSLKIITKKPIIPSREEQAKNPRSRSAKLRIAQ 285

Query: 316 RTV 318
           +  
Sbjct: 286 KIE 288


>gi|254281944|ref|ZP_04956912.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B]
 gi|219678147|gb|EED34496.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B]
          Length = 306

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 173/304 (56%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L        +D T+G GG+SR           +I  D+DP A    ++
Sbjct: 5   HRSVLLEEAVTALITTADGTYVDGTYGRGGHSRRVLAALSEAGRLIGFDKDPEAAVHAED 64

Query: 77  TMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +     +FS F  +F+ + D   P++G  GV+ DLGVSS Q+D G+RGFSFQ  GPLDM
Sbjct: 65  -LAATDSRFSFFHRSFADIPDIKRPEQGFSGVLLDLGVSSPQLDNGERGFSFQSDGPLDM 123

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++A+  +N+A + +L ++    GEE+ A+RIA+AI+  R+  P + T  L+ +
Sbjct: 124 RMDSSSGVTAAVWINKAPLAELIQVFRDYGEERFATRIANAIIDAREETPIERTGRLAQI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++      + ++ HPATR FQA+RIF+N E+E+L   L      L  GG L+V+SFHSLE
Sbjct: 184 VKVAHPRWEPHK-HPATRVFQAIRIFINRELEDLESVLVRVIDTLDVGGRLVVISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+F    S  V   R +   +A       +  K V P+ E++A N R+RSA +R  
Sbjct: 243 DRIVKRFMRDESRGVSVPRGVPIRDADMGRRLRVVGKAVKPSTEELANNPRARSAVMRVA 302

Query: 315 MRTV 318
            R  
Sbjct: 303 ERLA 306


>gi|229829369|ref|ZP_04455438.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM
           14600]
 gi|229792532|gb|EEP28646.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM
           14600]
          Length = 318

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 164/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L + I  L      + +D T G  G+SR           +I +D+D  A++
Sbjct: 1   MEFKHYSVMLRETIDALAVKSDGIYVDGTMGGAGHSRQIASRLSGRGRLICIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            G+E ++D+ ++ ++ ++ + +++  + +     V+G++ DLGVSS Q+D  +RGFS+  
Sbjct: 61  AGKEKLKDFSDRVTIVRSNYERMRQILEELGIASVNGILLDLGVSSYQLDTPERGFSYMD 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            G L        +  +A D+VN+ + ++L R++   GE++ A  IA  IV  RQ    +T
Sbjct: 121 EGALLDMRMDCRNPRTARDIVNEYSERELFRMIRNYGEDRFAKNIAKNIVLARQEKTIET 180

Query: 188 TQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +L+ +I+++V         HPA R++QA+RI +N E++ L   +      L  GG   
Sbjct: 181 VGELNEVIRRSVPRKIQVTGGHPAKRTYQAIRIELNRELDVLRDHIDEMIDLLADGGRFA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+SFHSLEDR+VK  F +     +             +  + IT+K ++P +E++A N R
Sbjct: 241 VISFHSLEDRIVKNAFQTAEDPCICPPEFPVCVCGRKSKGRVITRKPILPGKEELAENHR 300

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   R
Sbjct: 301 SRSAKLRVFER 311


>gi|309388985|gb|ADO76865.1| S-adenosyl-methyltransferase MraW [Halanaerobium praevalens DSM
           2228]
          Length = 310

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ I  L      + LD T G  G+S            +IALDRD  A+   +
Sbjct: 4   KHQAVLLKEAIDYLEIKKDGIYLDGTLGRAGHSSEILHNLSEIGKLIALDRDTAAIKAVE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 K    L  + F  L   +     K VDG++FDLGVSS Q+D  +RGFS+QK+GP
Sbjct: 64  SKFSKSK-SLILKHSNFQDLDQVLDQLKIKAVDGMLFDLGVSSPQLDNPERGFSYQKNGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN  +  +L +I+   GEE  ++RIA  IVK R+    +TT DL
Sbjct: 123 LDMRMNSSQSLTAKTIVNNYSAAELEKIITEYGEENWSARIAEFIVKMRKEKVIETTDDL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    + +  HPA R+FQALRI  NNE+E+L   +  A   LK GG L++++F
Sbjct: 183 VEVIKAAIPKAVRRSGGHPARRTFQALRIETNNELEQLKNLIDKAVSYLKPGGRLVIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +                 +  + ITK  +  ++ +   N RSRSA
Sbjct: 243 HSLEDRIVKHKFRDLAKDCTCPPDFPICVCDKKSEVKVITKSPIQASEIEKEGNPRSRSA 302

Query: 310 KLRAGMRT 317
           K+R   + 
Sbjct: 303 KMRVAEKI 310


>gi|227824963|ref|ZP_03989795.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21]
 gi|226905462|gb|EEH91380.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21]
          Length = 311

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 168/307 (54%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  +   P  + +D T G  G+S +          +I +D+D  A+    +
Sbjct: 7   HKSVLLRESVDWIVTDPKGIYVDCTLGGAGHSHAIAEELDPEGLLIGIDQDEDAIMAASK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +  +  + F  L   +     + VDG+ FDLGVSS Q+D  +RGFS+   GPL
Sbjct: 67  RLEDAACKVKIVHSNFRNLGTILEGLNLQEVDGIFFDLGVSSYQLDTPERGFSYMHDGPL 126

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G  +A+DVVN    +DL  ++   GEE+ + RIA  IV++R+  P +TT DL 
Sbjct: 127 DMRMDQEGKLTAADVVNTYKEEDLADLIYKYGEERWSRRIAQFIVEKRKEKPLRTTSDLV 186

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+I+  +    + +  HPA R+FQA+RI VN+E++ L   + +A K LK GG + V++FH
Sbjct: 187 SVIKAAIPKKARQDGPHPAKRTFQAIRIEVNDELKILDSTMETAVKHLKKGGRIGVITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K+ F   +   +    +      H    + +  K  +P++ ++  N R+RSA+
Sbjct: 247 SLEDRIIKQSFKRMAKGCICPPELPVCVCGHKPELKKL--KEFIPSETELEDNPRARSAR 304

Query: 311 LRAGMRT 317
           LR  ++ 
Sbjct: 305 LRGAIKI 311


>gi|329964563|ref|ZP_08301617.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057]
 gi|328524963|gb|EGF52015.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057]
          Length = 319

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 157/312 (50%), Gaps = 16/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+S+        G  ++  D+D  
Sbjct: 11  MKEEQTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSKEILSRLGDGGRLLGFDQDED 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F   ++ F  L +++       VD ++ DLGVSS   D  +RGFS
Sbjct: 71  A-----ERNIVNDPHFIFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSERGFS 125

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+   G +A+D+VN  + + L  I  + GE K + ++A  IVK R     
Sbjct: 126 FRFEGALDMRMNKRAGTTAADIVNAYDEERLADIFYLYGELKNSRKLASVIVKARALQKI 185

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 186 STIGEFLDIVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+++HSLEDR+VK    + + +  A +         A F+ +  KV+VP + ++  N R
Sbjct: 244 AVITYHSLEDRIVKNVMKTGNIEGKAEKDFY--GNVRAPFRLVNNKVIVPDESEIERNPR 301

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 302 SRSAKLRIAEKV 313


>gi|46445945|ref|YP_007310.1| S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|51316230|sp|Q6MEG4|RSMH_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46399586|emb|CAF23035.1| probable S-adenosyl-methyltransferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 316

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H  VLLE+VI    P   KV +D T GAGG++ +  +    +   + +D+DP A++   
Sbjct: 7   PHRSVLLEEVIEAFQPVQLKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIAN 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +K++  L Q  FSQ   ++ + G   +   + DLGVSSMQ+D  +RGFSF K GP
Sbjct: 67  KRLEKWKQKILLKQGNFSQFDIFLKEIGFSSMDGLLVDLGVSSMQLDQPERGFSFSKDGP 126

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  G  +A+D+VN  +  DL +I    GEEK+    A  IV+ RQ     TT DL
Sbjct: 127 LDMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQARQVKQILTTTDL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++L++    ++    I+P T  FQALRI VN E++ L Q +      LK GG + V+SFH
Sbjct: 187 ANLLKPAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFDYLKPGGRVAVISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK      +        +          V + + +K + P ++++  N RSRSA
Sbjct: 247 SLEDRIVKNELRLAASDKWETTGLGSGLFRDKKPVAKLVNRKPICPHEKEIKENPRSRSA 306

Query: 310 KLRAGMRTV 318
           K R   +  
Sbjct: 307 KFRIAEKLE 315


>gi|166365785|ref|YP_001658058.1| S-adenosyl-methyltransferase MraW [Microcystis aeruginosa NIES-843]
 gi|263456493|sp|B0JKS7|RSMH_MICAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166088158|dbj|BAG02866.1| S-adenosyl-L-methionine-dependent methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 292

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 165/304 (54%), Gaps = 25/304 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+ VL +++IA LN  PG   LD T G GG+SR   +      V A+DRD  A+   + 
Sbjct: 6   PHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKI 65

Query: 77  TMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           ++  Y   + +L+   F+       +   DG++ DLGVSS Q D  +RGFSF+ +  LDM
Sbjct: 66  SLAPYLDSRLTLWWGNFADYD--GQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  C  ++A+D++N  + K+L  +    GEE+ +  IA +IV+  +     TT+  + +
Sbjct: 124 RMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQ--KRPFTTTTELAAVI 181

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
                   +  RIHPATR FQALRI VN E++ L Q L  A   LK+ G++ ++SFHSLE
Sbjct: 182 ASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DRL+K  F   +                   + ITKK ++P++E+ A N RSRSAKLR  
Sbjct: 242 DRLIKYGFRENN-----------------SLKIITKKPIIPSREEQAKNPRSRSAKLRIA 284

Query: 315 MRTV 318
            +  
Sbjct: 285 QKIE 288


>gi|56476234|ref|YP_157823.1| S-adenosyl-methyltransferase MraW [Aromatoleum aromaticum EbN1]
 gi|68565443|sp|Q5P6Y9|RSMH_AZOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56312277|emb|CAI06922.1| S-adenosyl-methyltransferase mraW [Aromatoleum aromaticum EbN1]
          Length = 312

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 166/314 (52%), Gaps = 11/314 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS+A       HV VLL + +  L   PG V +D TFG GG+SR+          +IA D
Sbjct: 1   MSAA-----PQHVTVLLAEAVEALAIRPGGVYVDGTFGRGGHSRAILAKLDADGRLIAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RDP A+   +              + F++  D +  + VDGV+ DLGVSS Q+D   RG 
Sbjct: 56  RDPRAIEVARALPDPRLTAVHAPFSAFAEELDRLGLEHVDGVLLDLGVSSPQLDEAARGM 115

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM    G + +  +  A+V  +T +L   GEE+ A  IA AI   R    
Sbjct: 116 SFRFDAPLDMRMDTSRGQTVAQWLADASVAQITEVLRDYGEERFAYAIAKAIAAARAGGA 175

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T+ L+ +++K V   +  + HPATRSFQALRIF+N E+EEL+  L +A + LK GG 
Sbjct: 176 VASTRQLAEIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELSLVLPAAVERLKPGGR 234

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFN 303
           L+ +SFHSLEDR+VK+F    S        +    A     +  +  K   P   +VA N
Sbjct: 235 LVAISFHSLEDRIVKRFMRDESRPPQLPSRLPLRAAELPQPRLRLVGKSQRPGPGEVAAN 294

Query: 304 RRSRSAKLRAGMRT 317
            RSRSA +R   RT
Sbjct: 295 PRSRSAVMRVAERT 308


>gi|284039278|ref|YP_003389208.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74]
 gi|283818571|gb|ADB40409.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74]
          Length = 301

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H PVLL+  I  LN  PG   +D TFG GG+SR       G  +   D+D  A + 
Sbjct: 1   MATYHEPVLLQACIDGLNLQPGGTYVDITFGGGGHSREILNQLEGGKLFGFDQDADARAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q          +       +       + VDG++ DLG+SS QID  +RGFS +    L
Sbjct: 61  AQAIGDSRLTFVASNFRNIKRYLRLYKAEQVDGILADLGISSHQIDTPERGFSTRFDADL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +   +A  VVN+    +L RILG+ GE   A   A A+V  R + P +T  DL 
Sbjct: 121 DMRMNQNADKTARQVVNEYPEAELHRILGMYGEITNARTAAAALVSARSNRPLKTVNDLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + +Q+     K N+     + FQALRI VN E++ L + L      LK GG L+V+S+HS
Sbjct: 181 AALQRLAPRGKENK--YFAQVFQALRIEVNEELQALEEFLEQVPDILKPGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F      +    + +  ++  P   QSIT+K V  T E++A N R+RSAKLR
Sbjct: 239 LEDRLVKNFINKGKFQGEVEKDLFGNDLKP--LQSITRKPVEATPEEIARNPRARSAKLR 296

Query: 313 AGMR 316
              +
Sbjct: 297 IAEK 300


>gi|261414983|ref|YP_003248666.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371439|gb|ACX74184.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325451|gb|ADL24652.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 337

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 151/309 (48%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H PV+L++ +  LN  P     D T G GG+S +          + A DRD  AV    
Sbjct: 29  YHDPVMLKECLEGLNIKPNGTYSDCTLGGGGHSYAIAQELNSEGTLHAFDRDDEAVQFAT 88

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +     +F +    FS+L + +    +DGV++DLG+SS Q+D   RGF+F    PLD+
Sbjct: 89  KRLAGVAPKFIVHPVPFSELGNEIEPNSLDGVLYDLGISSHQVDDSSRGFTFVGDNPLDL 148

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM      SA + +   +  D    L    +  +A ++A  I ++      +    L S 
Sbjct: 149 RMDRRENVSAQEWLRSVSEDDFAAALRKNADMDRAFKLATRIKEKVGEITTEGRDVLPSD 208

Query: 195 IQKTVYFSKNNRIHPAT----RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           I+  V     ++   A     R FQA+R+ VN E++++   LR+A   LK GG L+V+S+
Sbjct: 209 IKAVVEAVFPDKRREANSLLARVFQAIRMEVNGELKQIEDSLRAAVDCLKVGGRLVVMSY 268

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HS+EDR VK+  A      +   ++       +    + + +K ++P+ +++  N R+RS
Sbjct: 269 HSVEDRCVKETAAEFEKACICPENLPVCMCGGNHQRLKKVNRKPILPSADEINRNSRARS 328

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 329 AKLRIYERV 337


>gi|145641287|ref|ZP_01796867.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae R3021]
 gi|145274124|gb|EDK13990.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.4-21]
          Length = 321

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 121/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR         S +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNSRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|71281391|ref|YP_271121.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H]
 gi|88909194|sp|Q47VQ1|RSMH_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71147131|gb|AAZ27604.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H]
          Length = 316

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 173/311 (55%), Gaps = 13/311 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
             H+ VLL + +  L        +D TFG GG+S            +IA+DRDP A++  
Sbjct: 5   TTHISVLLNEAVDGLAITDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++   D +  F +    F+ L +          VDG++ DLGVSS Q+D  +RGFSF K 
Sbjct: 65  EKFKDDKR--FLIEHQGFAALAEIAEKHELTGKVDGILLDLGVSSPQLDEAERGFSFMKD 122

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM    G +A++ +  A+V+D+T +L   GEEK A RIA+AIV  R+  P   T 
Sbjct: 123 GPLDMRMDTSKGQTAAEWLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREETPLTRTS 182

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ LI KT    +  + HPATRSFQA+R+++N+E++++ + L ++   L  GG L+V+S
Sbjct: 183 QLAKLI-KTTAPQREIKKHPATRSFQAIRMYINSELDQIEKALVASLDVLAEGGRLVVIS 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK+F    S      R +  S       + ++   + + P+Q +V  N RSR
Sbjct: 242 FHSLEDRLVKQFMKKHSQGKKVPRGLPISEIELNKGKKLSLVGRRLKPSQTEVEENVRSR 301

Query: 308 SAKLRAGMRTV 318
           S+ LR   R  
Sbjct: 302 SSVLRVAERLE 312


>gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
 gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
          Length = 346

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 158/324 (48%), Positives = 204/324 (62%), Gaps = 8/324 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             HVPVLL +VI  L P PG   LDATFGAGGY+R+      + V+ALDRDP AV  G+ 
Sbjct: 17  ARHVPVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGRP 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +   + + +L +A FSQL +    +G    DGVVFD+GVSSMQ D  +RGFSF+  GPL
Sbjct: 77  LVEVARGRLTLVEARFSQLDEVARARGFAPLDGVVFDIGVSSMQFDEAERGFSFRGDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G +A+D+VN+A+ + L  IL   GEE+ A RIA AIV  R+ APF +T+ L+ 
Sbjct: 137 DMRMEGRGQTAADIVNEADEETLADILYFYGEERAARRIARAIVHDRKLAPFASTRALAE 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I + V   +   IHPAT+SFQALRI VN+E+ EL  GL  AE+AL  GG L VV+FHSL
Sbjct: 197 MIAR-VAPGRPGDIHPATKSFQALRIAVNDELGELLDGLAGAERALAEGGRLAVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+FFA R G+       +P  A P     I   ++ V PT+E+   N R+RSAKL
Sbjct: 256 EDRIVKQFFAERCGRGETGSRRLPGEAAPPPRSFICEGRQPVAPTREETERNPRARSAKL 315

Query: 312 RAGMRTVERSIE-DDSFVHLPRLP 334
           R   RT   ++  DD    L RLP
Sbjct: 316 RFATRTAGPALPLDDRLARLARLP 339


>gi|149377270|ref|ZP_01895017.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893]
 gi|149358458|gb|EDM46933.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893]
          Length = 326

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 120/321 (37%), Positives = 181/321 (56%), Gaps = 12/321 (3%)

Query: 9   MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62
           M++   H       H  VLL+  + LL   P  V +D TFG GG+SR        G  ++
Sbjct: 1   MTAGREHEPAGQYRHRSVLLDSAVDLLVNDPDGVYVDGTFGRGGHSRLILGRLGQGGKLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQID 119
            +D+DP A+   ++ +     +F  F  +F++L    +      V+GV+ DLGVSS Q+D
Sbjct: 61  GIDKDPDAIQVARD-LSASDARFQPFHGSFAELGAAAEAQGWMKVNGVLLDLGVSSPQLD 119

Query: 120 CGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF + GPLDMRM      SA+  + +A+ KD+  ++   GEEK + RIA  +V+
Sbjct: 120 DAARGFSFMRDGPLDMRMDPGQAPSAAQWLAEADEKDIANVIWRYGEEKFSRRIARLVVE 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RR+ AP +TT+ L+SL+ + V   + ++ HPATR+FQA+RIF+N E+E+L  GL +A + 
Sbjct: 180 RRKEAPLETTRQLASLVSEAVPKKEKHK-HPATRTFQAIRIFINRELEDLELGLNAAVEK 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L+V+SFHSLEDRLVK+F    +      + +  +    A    +  K      E
Sbjct: 239 LMPGGRLVVISFHSLEDRLVKRFMRDLARGPRLPKGVPVTAEQEASAFRLIGKANKADTE 298

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +V+ N R+RSA +R   R  E
Sbjct: 299 EVSDNVRARSAVMRVLERIPE 319


>gi|255262076|ref|ZP_05341418.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62]
 gi|255104411|gb|EET47085.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62]
          Length = 326

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 153/325 (47%), Positives = 201/325 (61%), Gaps = 9/325 (2%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPF 69
           +A       H+PVLL  ++    P      LD TFGAGGY+R     G++V   +DRDP 
Sbjct: 4   AASSPNDAPHIPVLLRPLLVACAPVS-GRWLDGTFGAGGYTRGLIDDGADVVYGVDRDPL 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A       + +Y ++  L + TFS L  Y  D  +DGVV DLGVSSMQ+D  +RGFSF +
Sbjct: 63  AFDMAAPWVGEYGDKIKLVEGTFSALDTYADD--LDGVVLDLGVSSMQLDLAERGFSFMR 120

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS SG SA+D+VN A+   L  IL   GEE+ + RIA AIVK R   P  TT 
Sbjct: 121 DGPLDMRMSQSGPSAADIVNNADETALANILYDFGEERASRRIARAIVKAR---PLNTTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+++I+  +   K N+ HPATRSFQA+RI VN+E  ELA+GL +AE+ALK GGLL VVS
Sbjct: 178 ELAAVIESCLPRPKPNQSHPATRSFQAIRIAVNDEYGELAEGLMAAERALKPGGLLAVVS 237

Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHS+EDR+VK+F   R+GK     R+   + A  A F+ +T+K V P  +++  N RSRS
Sbjct: 238 FHSVEDRMVKRFMQERAGKTGRGSRYAPETEAIEAAFEIVTRKAVGPDDDELQENPRSRS 297

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPR 332
           AKLR   RT   S E D   + +P 
Sbjct: 298 AKLRVARRTDAPSGEIDRKTIGMPG 322


>gi|317154466|ref|YP_004122514.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944717|gb|ADU63768.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL +VI  L P PG   LD T G GG+S +  +    G+ +  LDRD  A++   E
Sbjct: 11  HTTVLLHEVIEWLRPKPGGRYLDGTLGMGGHSHALLERAGQGAELAGLDRDAQALALAGE 70

Query: 77  TMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++   F L  + F +  D +  + VDG V DLGVSS+Q+D  +RGFSF   GPL
Sbjct: 71  RLAGMGDRAHLFRLPFSRFEEALDALGWETVDGAVLDLGVSSLQLDEAERGFSFLSDGPL 130

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA+D+VN     DL RI+   GE+  A +IA AI++ R       T  L+
Sbjct: 131 DMRMDPDCGPSAADLVNTLKHGDLARIIRTWGEDPLAGKIASAILRARDKEAIMRTLRLA 190

Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +++        +  R HPATR+FQ LRI VN E EEL   L++    L  G  L ++SF
Sbjct: 191 EIVRLAYPPKMRHTARNHPATRTFQGLRIAVNREAEELEHYLQAIVGRLAPGARLAIISF 250

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR VK+ F + +       H M  +       + +T+K ++P+ +++A N RSRSA
Sbjct: 251 HSLEDRAVKRAFLADAKGCHCPPHQMHCTCNGVPSLKVLTRKPLIPSDDEMARNPRSRSA 310

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 311 KLRVAER 317


>gi|294784023|ref|ZP_06749345.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA]
 gi|294479835|gb|EFG27614.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA]
          Length = 314

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y  ++ + +  F  +           VDG++ D+GVSS Q+D  +RGFS++    
Sbjct: 68  KRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVK 127

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA DVVN  + ++L+RI+   GEE+ A +IA  I + R+  P  TT +L
Sbjct: 128 LDMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 VALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ IT+K ++P ++++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIPIEDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|332885960|gb|EGK06204.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas
           mossii DSM 22836]
          Length = 303

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 16/308 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
             H+PVLL + I  +N  P  + +D TFG GG+SR          ++ A D+D  A+   
Sbjct: 4   AYHIPVLLHESIDGMNIHPDSICVDVTFGGGGHSREILSRLGDKGHLYAFDQDEDAIKN- 62

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-S 130
                +   +F+  ++ F  L++++       VD ++ DLGVSS   D  DRGFSF+   
Sbjct: 63  ----IEPSNKFTFIRSNFRYLKNFIKYHNVDGVDAILADLGVSSHHFDAEDRGFSFRFED 118

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+   G +A+ ++N    + L  +  + GE KQ+ RIA  IVK R+  P++ T 
Sbjct: 119 SDLDMRMNRKGGKTAAQILNTYTEEKLADVFYLYGELKQSRRIASVIVKTRKEKPYKKTS 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL + +   V   +  +   A ++FQALRI VN E+E L + L  A   LK GG L V++
Sbjct: 179 DLLATLNSFVGRGEKEKKILA-QAFQALRIEVNEEMEVLKEMLTQALDILKPGGRLSVIT 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK FF + + +    +    +   P  F+ I  KV+ P++++   N RSRSA
Sbjct: 238 YHSLEDRIVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVITPSKDEEERNPRSRSA 295

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 296 KLRVAEKV 303


>gi|311693447|gb|ADP96320.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [marine
           bacterium HP15]
          Length = 327

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
           M++  +   G    H  VLL+  +  L   P    +D TFG GG+SR           ++
Sbjct: 1   MTTDRNQEAGAAYSHRSVLLDSAVDYLVNDPDGYYVDGTFGRGGHSRLILGRLGPSARLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQID 119
            +D+DP A+   +E +     +F  F  +F++L         + V+GV+ DLGVSS Q+D
Sbjct: 61  GIDKDPEAIRAAKE-LEAQDNRFHSFHGSFAELGAAVVGQGWQTVNGVLLDLGVSSPQLD 119

Query: 120 CGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF + GPLDMRM+     SA++ +  A+  D+  ++   GEEK + RIA  +V+
Sbjct: 120 DASRGFSFMRDGPLDMRMNTEQSPSAAEWLATADESDIANVIFRYGEEKFSRRIARLLVE 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RRQ AP +TT+ L+ L+ + V   + ++ HPATR+FQA+RIF+N E+E+L  GL+SA   
Sbjct: 180 RRQEAPVETTRQLAELVSEAVPKKEKHK-HPATRTFQAIRIFINRELEDLEVGLQSAVDH 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L+V+SFHSLEDRLVK+F    +      + +  +    A    +  K      E
Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPQLPKGVPVTAEQEASDFRLVGKASKAGAE 298

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           +V+ N R+RSA +R   RT 
Sbjct: 299 EVSDNVRARSAVMRVLERTD 318


>gi|262831468|sp|C5WIJ4|RSMH_STRDG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYNQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A DVVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +              F+ +++K ++P+QE++A N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSRKPILPSQEELAANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|298207891|ref|YP_003716070.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus
           HTCC2559]
 gi|83850532|gb|EAP88400.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus
           HTCC2559]
          Length = 298

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVLL + +  LN  P  V +D TFG GG+S+           + A D+D  A+  
Sbjct: 1   MEYHNPVLLHETVDGLNIKPDGVYVDVTFGGGGHSKEILNRLGPNGKLFAFDQDQDALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + D +         +++        K VDG++ D GVSS Q D  +RGFS +    
Sbjct: 61  A---LEDDRFTLIPQNFRYAKRFVRVQGYKTVDGILGDFGVSSHQFDVAERGFSTRFDSR 117

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ +   SA +VVN      L ++L   GE + A ++A AI   R+  P +T++ L
Sbjct: 118 LDMRMNQNDALSAYEVVNTYEEGKLRQVLSQYGELRNAPKLARAIYGARKDTPIETSEHL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I   +   K ++     + +QA+RI VN E+E L + L+  E  L  GG L ++S+H
Sbjct: 178 KEVINSFLPRGKEHK--MLAQIYQAIRIEVNQELEVLKEFLKQTEDMLTTGGRLSLISYH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK++  S   +    +    +   P  F+ +  K++VP  +++A N R+RSAKL
Sbjct: 236 SLEDRLVKRYIRSGLFEGEPEKDFYGNIEVP--FKKV-GKLIVPNAKEIATNNRARSAKL 292

Query: 312 RAGMR 316
           R   R
Sbjct: 293 RVAER 297


>gi|238761549|ref|ZP_04622524.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           kristensenii ATCC 33638]
 gi|238700063|gb|EEP92805.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           kristensenii ATCC 33638]
          Length = 320

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 170/321 (52%), Gaps = 15/321 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++        H  VLL++ +  LN     + +D TFG GG+SR           +IA+DR
Sbjct: 4   NNKTVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+   +        +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +
Sbjct: 64  DPQAIEAAKSI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPE 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + GPLDMRM    G+SA+D + +A   D+  +L   GEE+ A R+A AIV+R  
Sbjct: 121 RGFSFMRDGPLDMRMDPTRGLSAADWLMKAGADDIAWVLKTFGEERFAKRLAKAIVERNL 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P   T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L  
Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQE 298
            G L V+SFHSLEDR+VK F    S        +  + A           +   ++P   
Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDA 299

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +VA N R+RS+ LR   R  E
Sbjct: 300 EVAENPRARSSVLRFAERIKE 320


>gi|256827376|ref|YP_003151335.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM
           15641]
 gi|256583519|gb|ACU94653.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM
           15641]
          Length = 321

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 112/323 (34%), Positives = 177/323 (54%), Gaps = 18/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIAL 64
           MS+  +     H+PVLL + +  L    G+  +DAT G  G+S    +   +    ++ +
Sbjct: 1   MSAVTNE--YRHIPVLLTECLDYLRLETGRTYVDATLGGAGHSIEAAKHI-QTAGTLVGI 57

Query: 65  DRDPFAVSCGQETM----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQ 117
           D+D  A++  +  +     D + +  L +  F  + + +       VD  +FDLGVSS+Q
Sbjct: 58  DQDEVALTAARTRLLALPTDKRPELCLLRGNFGDMDELLLQADIPSVDAFLFDLGVSSVQ 117

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           ID   RGFSF++  PLDMRM     +   ++++N  N  DL RI+    +E+ A+RIA  
Sbjct: 118 IDTPSRGFSFKEKAPLDMRMDPGKSTLTAAEIINTYNAADLARIIRTYSDERWATRIADF 177

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           IV+ R  A  +T+  L  +I+  +  S + +  HPA R+FQALRI VN+E++ L QGL +
Sbjct: 178 IVQARTHARIETSDQLVDIIKAAIPASARRSGGHPAKRTFQALRIEVNSELDVLQQGLEA 237

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVV 293
           A + L  GG L V+S+HSLEDR+VK+ F   S        +      +  + + IT+K V
Sbjct: 238 AIRWLAPGGRLAVISYHSLEDRIVKETFLRFSRGCTCPPDLPVCVCGNVPIIKVITRKPV 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +PT E++  N R+RSAKLR   +
Sbjct: 298 LPTPEEIERNPRARSAKLRVAEK 320


>gi|145633140|ref|ZP_01788872.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655]
 gi|144986366|gb|EDJ92945.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655]
          Length = 321

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 18/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A+    +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIVEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA   +T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321


>gi|328950951|ref|YP_004368286.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451275|gb|AEB12176.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus
           hydrothermalis DSM 14884]
          Length = 281

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 120/298 (40%), Positives = 167/298 (56%), Gaps = 19/298 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL  + + LL    G + +DAT G  G++R   + G  VI  D+DP A++  +    
Sbjct: 3   HVPVLYHETLELLAVQRGGLYVDATLGGAGHTRGILERGGQVIGFDQDPEAIARVRALRL 62

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           D                + +    VDGV+ DLGVSS   D  +RGFS++  GPLDMRMS 
Sbjct: 63  DGLTLVEGNFRHLEAHLNELGVAEVDGVLADLGVSSYHFDNPERGFSYRHEGPLDMRMSG 122

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G +A+DVVN   V++L RIL   GEE +A RIA  I + R+  P +TT  L+ ++++ V
Sbjct: 123 EGPTAADVVNTYPVEELARILRTFGEEPRAWRIARRIAEVREQQPIRTTTQLAEVVRQAV 182

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
            +      HPA ++FQALRI+VN+E+  L   L +A + LK GG L V+SFHSLEDR+VK
Sbjct: 183 GW--RGAGHPARKTFQALRIYVNDELGALEAFLEAAARVLKPGGRLAVISFHSLEDRIVK 240

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +F                     A FQ +TKK + P+  + A N R+RSAKLR G+R 
Sbjct: 241 RFLKE-----------------DARFQVLTKKPITPSDAERATNPRARSAKLRGGVRV 281


>gi|326795778|ref|YP_004313598.1| ribosomal RNA small subunit methyltransferase H [Marinomonas
           mediterranea MMB-1]
 gi|326546542|gb|ADZ91762.1| Ribosomal RNA small subunit methyltransferase H [Marinomonas
           mediterranea MMB-1]
          Length = 312

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 183/314 (58%), Gaps = 9/314 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +  +  +H+ V+L++ + +L        +D TFG GG++R          ++  D+DP A
Sbjct: 1   MTSSEHEHISVMLDESVEMLVTNESGQYVDGTFGRGGHTRLVLSKLRDGKLLGFDKDPVA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
           +  G++ +     +F + Q +F+ + D++P       +DG++ DLGVSS Q+D  +RGFS
Sbjct: 61  IEFGRK-LEAEDSRFEIVQDSFANMLDHIPAVFGTEKIDGIMMDLGVSSPQLDDAERGFS 119

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM+   G+SA++ +  A  K++  ++   GEE+ + RIA AI ++R  AP 
Sbjct: 120 FMNDGPLDMRMNPDQGMSAAEWIAVAAEKEIADVMYQYGEERFSRRIAKAICEKRLEAPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  LS ++ +     +  + +PATR+FQ +RI++NNE+ +L +GL  A  +LK GG L
Sbjct: 180 TTTAQLSKIVAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEKGLEVAADSLKVGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFHSLEDR+VK+F    S      RH+   NAH  +      K   P++++V  N R
Sbjct: 239 VVISFHSLEDRIVKRFMKKMSKGPDLPRHLPIQNAHLDIKFKTVGKATKPSKDEVTSNVR 298

Query: 306 SRSAKLRAGMRTVE 319
           SRSA LR   RT +
Sbjct: 299 SRSAVLRVLERTRD 312


>gi|304439975|ref|ZP_07399868.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371467|gb|EFM25080.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 314

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 9/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +H+PVL  + I  LN     + +D T G  G+S    K       ++ +D+D FA+ 
Sbjct: 2   TNFEHIPVLFNETIEGLNIRENHIYMDCTIGGAGHSSEILKRLNGTGLLVGIDQDEFALY 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ +R+  + F LF   F   ++ +       VDG++ DLGVSS Q D   RGFS+  
Sbjct: 62  TSEKRLREIGDNFKLFNNNFELFRENLDSLGISKVDGILLDLGVSSHQFDEASRGFSYNY 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  + I+A D+VN  + + L +I    GEEK + R+A  IVK R S   +TT
Sbjct: 122 DAPLDMRMNKSTRITAKDIVNTYSKEALMKIFYEYGEEKWSKRVAEFIVKARNSKTIETT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    ++   HPA R FQALRI  N+E+  L + L    ++L  GG + V
Sbjct: 182 FELVEIIKAAIPKGARSGGPHPAKRIFQALRIETNDELGVLRRSLGDMIESLNPGGRICV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK  F       +      + +       + IT+K +  ++E++A N R+
Sbjct: 242 ISFHSLEDRIVKDTFKYYYLDCICPPEVPVCTCNKKREIEIITRKPITASKEELAINNRA 301

Query: 307 RSAKLRAGMRTV 318
            SAKLR   +  
Sbjct: 302 HSAKLRIAEKLE 313


>gi|257066696|ref|YP_003152952.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548]
 gi|256798576|gb|ACV29231.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548]
          Length = 306

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 161/310 (51%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H+PVL ++ I  LN  P  + LD T G GG+S+   +       +IA+D+D  A+ 
Sbjct: 1   MKFEHIPVLAKETIENLNINPDGIYLDLTLGKGGHSKMILERLSDKGRLIAIDQDKEAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E +RD+    +   + F   +  + D     +DG + D+GVSS QID  DRGFS+ K
Sbjct: 61  AAKENLRDFSN-VTFVNSNFENFEKALEDLGLDLIDGALMDIGVSSYQIDNADRGFSYMK 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+     +A  +VN+ +  +L RI    GEE+ A  IA  IV  R      TT
Sbjct: 120 DGPLDMRMNQDNELTAEVIVNEYSQDELERIFFEYGEERFARAIARNIVNLRDEERIDTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  ++ K++   K+   HP  R FQALRI VN E+E L   +      LK  G + ++
Sbjct: 180 FKLREIVAKSI---KSQDAHPEKRVFQALRIEVNRELEVLENTIERVVDHLKKDGRIAII 236

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   +   +           H A  + IT+K V  ++ ++  N RS+
Sbjct: 237 TFHSLEDRIVKNKFKDLARDCICPPEFPVCVCDHRAKIKIITRKPVTASKAELRDNSRSK 296

Query: 308 SAKLRAGMRT 317
            AKLR G R 
Sbjct: 297 PAKLRVGQRI 306


>gi|300813315|ref|ZP_07093670.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512586|gb|EFK39731.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 320

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 8/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               HV VL  +V+  LN    K+ +DAT G  G+S+           +I +D+D  A+ 
Sbjct: 1   MEFKHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIK 60

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              E + +Y+    F+     F ++ D +  K VDG++ DLGVSS Q D G RGFS++  
Sbjct: 61  KSHEVLSEYENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGKRGFSYRFD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A  +VN+ +  +L RI+   GEE  A RIA  IV+ R+     TT 
Sbjct: 121 SELDMRMDKTLPLTAKTIVNEYSKDELYRIIKEYGEENWAKRIAEFIVQERKIKKINTTF 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL  +I+K V    + +  HPA R+FQALRI VN+E+  L + +    + L  GG L ++
Sbjct: 181 DLVEVIKKAVPKGARRDGPHPAKRTFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAII 240

Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK  F    S  V     +I +       + IT+K +VPT+E++  N RS 
Sbjct: 241 SFHSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSH 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   +  
Sbjct: 301 SAKLRVAEKLE 311


>gi|182414441|ref|YP_001819507.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1]
 gi|262824715|sp|B1ZU25|RSMH_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|177841655|gb|ACB75907.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1]
          Length = 306

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 117/302 (38%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVLL +V+  L P      LD TFG GG++R+  +  +   V+ALDRDP A       
Sbjct: 5   HQPVLLREVLGFLAPRARGRYLDCTFGGGGHTRALLEAAAEVRVVALDRDPAAQPRAAAL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              + E+F      F +L +   + G DGV+FD GVSS Q+D  +RGFSF+   P DMRM
Sbjct: 65  RETFGERFEFIDRDFGRLAELPHE-GFDGVLFDFGVSSFQLDETERGFSFRHDAPADMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+ AS  +  A  + L R +   GEE+   RI  AI   R +     T  L+ LI 
Sbjct: 124 DPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDARGTGALARTASLAELIA 183

Query: 197 KTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +     +  +IHPATR+FQ +RI VN+EI  + + L +A   L  GG+L V+SFHSLE
Sbjct: 184 AAIPACDRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFAKLAPGGVLCVISFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR  K+FF    G+  +     P +    +   +T++ V P  +++A N RSRSAKLRA 
Sbjct: 244 DRPAKQFFRRMCGQPESAADATPQDLRVKLADPLTRRPVTPADDELAANPRSRSAKLRAL 303

Query: 315 MR 316
            R
Sbjct: 304 RR 305


>gi|116494758|ref|YP_806492.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei ATCC 334]
 gi|122263824|sp|Q039S2|RSMH_LACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116104908|gb|ABJ70050.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei ATCC 334]
          Length = 313

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 156/312 (50%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L   P    +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNHLTTGRLIAFDQDEAAIAT 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    +Q +L    F  L D +       VDG+++DLGVSS Q D   RGFS++  
Sbjct: 62  VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    DL RI    GEE  + +IA  I + R   P  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F   S      R +    A     ++ + +K ++P++E++A N R+ 
Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPNYRLVNRKPILPSEEELAVNHRAH 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  +
Sbjct: 302 SAKLRVIEKIHD 313


>gi|113460496|ref|YP_718560.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 129PT]
 gi|123031127|sp|Q0I1E1|RSMH_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112822539|gb|ABI24628.1| S-adenosyl-methyltransferase [Haemophilus somnus 129PT]
          Length = 319

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 118/324 (36%), Positives = 168/324 (51%), Gaps = 20/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           M         +H  VLL + +  L      + +D TFG GG+SR      S    +IA+D
Sbjct: 1   MQDTFSS--PEHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A+   Q        +F +   +FS + D          +DG++ DLGVSS Q+D  
Sbjct: 59  RDPQAIQVAQNI---QDSRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 115

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA++ +   + +DL  +L   GEE+ A RIA AIV   
Sbjct: 116 ERGFSFMKDGPLDMRMDTTQGLSATEWLRLVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 175

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA     + L+  +Q           K+   HPATRSFQA+RIF+N+E++EL + L  A
Sbjct: 176 KSAVQSGAEPLNRTLQLAELIAQSVPFKDKYKHPATRSFQAIRIFINSELDELEKVLNGA 235

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q +    K +
Sbjct: 236 LNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPVGKAI 295

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
           +PT++++A N RSRSA LR   R 
Sbjct: 296 MPTEQEMAANVRSRSAVLRIAERI 319


>gi|325286918|ref|YP_004262708.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           lytica DSM 7489]
 gi|324322372|gb|ADY29837.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           lytica DSM 7489]
          Length = 298

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL++ +  L+     V +D TFG GG+SR           +I  D+D  A++ 
Sbjct: 1   MSYHNPVLLKESVDGLSIKEDGVYVDVTFGGGGHSREILSRLGEKGRLIGFDQDEDALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      ++F L    F  ++    +   + VDG++ D GVSS Q D  +RGFS +  
Sbjct: 61  ALD-----DDRFLLINENFRYIKQFLKFHGIRKVDGILGDFGVSSHQFDKAERGFSTRFD 115

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRMS     SA DVVN     DL R+L   G+ + A+ +A+ I+  RQ    +TT 
Sbjct: 116 ADLDMRMSQKNTVSAFDVVNNYEYNDLRRVLFQYGDLRSANAMANTIIDYRQEGEIKTTD 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +++K +   K ++I    + +QA+RI VN EI+ + + L      L  GG L ++S
Sbjct: 176 QLKQVLKKFLPAFKEHKI--LAQIYQAIRIEVNQEIQVIKEFLEQTNDLLVEGGRLSLIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK++  +   +    +    +   P  F+ +   ++VP++E++A N R+RSA
Sbjct: 234 YHSLEDRLVKRYIRAGKFEGEPEKDFYGNIDVP--FKKV-GGLIVPSKEEIAVNNRARSA 290

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 291 KLRIAER 297


>gi|323497887|ref|ZP_08102896.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326]
 gi|323316932|gb|EGA69934.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326]
          Length = 316

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 167/316 (52%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + DY  D      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EANKI---DDPRFTIIHGPFSGMADYAKDYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185
           K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA AIV  R++     
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P++++V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEDQIKAMGSANLKPVGKAIKPSKQEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EMNARSRSSVLRLAEK 315


>gi|304413635|ref|ZP_07395079.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283726|gb|EFL92120.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 313

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 171/311 (54%), Gaps = 15/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLLE+ +  LN     + +D TFG GG+SR           +IA+DRDP AV   +
Sbjct: 6   KHESVLLEQAVHCLNLRDDGIYVDGTFGLGGHSRLILSRLGQQGRLIAIDRDPQAVEVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  Y  +      +DGV+FDLGVSS Q+D   RGFSF + G
Sbjct: 66  SI---TDPRFSIIHGPFSELARYAQESDLIGRIDGVLFDLGVSSPQLDNPQRGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA+  + +A+  ++  +L   GEE+ A R+A AIV+R Q  P   TQ+
Sbjct: 123 PLDMRMDPSRGLSAAQWLMKASADEIAWVLKTFGEERFAKRLARAIVERNQQQPMHRTQE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI   +   +    HPATRSFQA+RI++N+E+EE+ + L ++   L   G + V+SF
Sbjct: 183 LADLIVN-ILPMREKHKHPATRSFQAIRIYINSELEEITRALEASLSVLAPKGRISVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F   +S        M  +     +       T   ++P+ E+VA N R+R
Sbjct: 242 HSLEDRIVKNFIRQQSRGPQIPVGMPLTETQLRLMGGANLKTMGKMMPSAEEVAENPRAR 301

Query: 308 SAKLRAGMRTV 318
           SA LR   R  
Sbjct: 302 SAVLRFAERIA 312


>gi|316984918|gb|EFV63874.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76]
 gi|325199600|gb|ADY95055.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76]
          Length = 316

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A+ +DL  ++   GEE+ + RIA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A        I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|300741256|ref|ZP_07071277.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567]
 gi|300380441|gb|EFJ77003.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567]
          Length = 359

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 176/314 (56%), Gaps = 10/314 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
                HVPV+L++ + LL P       V++D T G GG++ +  +  SN+  I +DRD  
Sbjct: 43  QAQERHVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQ 102

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +  +  +F      +  ++D +       VDGV+ DLGVSSMQ+D   RGF+
Sbjct: 103 AHAIAAERLARFGNRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFA 162

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+     +A  VVN+ +   L RI+   GEEK A+RIA  IV++R+  PF
Sbjct: 163 YSYDAPLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPF 222

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L + IQK V  + +    HPA R+FQALRI VN+E+E L + + +A  AL+ GG 
Sbjct: 223 TTTGELVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGR 282

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            + +S+HSLED++VK+     +         +  + H    + IT+    PT+ ++A N 
Sbjct: 283 FVAMSYHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENP 342

Query: 305 RSRSAKLRAGMRTV 318
           R+ SAKLRAG +  
Sbjct: 343 RAASAKLRAGEKIK 356


>gi|221632091|ref|YP_002521312.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159]
 gi|262825878|sp|B9L274|RSMH_THERP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221156426|gb|ACM05553.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159]
          Length = 326

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 126/327 (38%), Positives = 176/327 (53%), Gaps = 12/327 (3%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           M  ++   +   +  T   H PVLL   +  L P  G   +DATFG GG+SR+  +    
Sbjct: 1   MSERARLALEDPLSTT---HEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAP 57

Query: 59  -SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVS 114
              V+A+D DP AV+  +     Y  +       F  L           VDG++FDLG+S
Sbjct: 58  SGQVLAIDADPAAVARARALAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLS 117

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S Q+    RGFSFQ +GPLDMR   + G  A+ +VN  + ++L  +    GEE +A  IA
Sbjct: 118 SDQLADPARGFSFQLAGPLDMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIA 177

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
             IV  R   P +TT  L++L+ + V  S+  RIHPATR FQALRI VN E+E LA GL 
Sbjct: 178 QTIVAERARQPIETTTQLAALVAR-VAGSRRERIHPATRVFQALRIAVNQELEALAAGLA 236

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKV 292
            A + L+ GG L+V++FHSLEDRLVK+FF   +   +      +    H    + +T + 
Sbjct: 237 QAVELLRPGGRLVVIAFHSLEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRP 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           V P+ E++  N RSRSA+LRA  R   
Sbjct: 297 VRPSAEEITRNPRSRSARLRAAERIAH 323


>gi|308271432|emb|CBX28040.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+PV+ ++VI  L+  PGK+  D T G  G++++ C+       ++ +D+D  A+ 
Sbjct: 1   MHPYHIPVMTKEVIHYLDCKPGKIYADCTIGGSGHAKAICEKIMPNGILVGIDQDKDAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK 129
             ++ +  +     LF   F  L +++    +     +V DLG+S  QID   RGFSF+ 
Sbjct: 61  NAKKILFPHLPNIHLFHGNFVNLSEFLLKCNITKVDGIVLDLGLSLHQIDSSKRGFSFKN 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + PLDMRM+     +A +++N+ +  +L +++   GEE  A  IA  IVK R+    +T 
Sbjct: 121 TEPLDMRMNTDSDINAGNLINKLDEVNLWKLIRDYGEEPWARNIARNIVKARKDCEIKTN 180

Query: 189 QDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            +L  +I  ++        +IHPATR F ALRI VNNE+E L++ + +    L   G L 
Sbjct: 181 AELVKIISDSIPKKIQYKQKIHPATRVFMALRIAVNNELERLSEFMDNVADLLNPEGRLC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK+       + +   +          + +++ KK + P +E+   N  
Sbjct: 241 VLTFHSLEDRIVKQKIREMEKECVCPPNFPKCICNKIKLVRAVNKKAIAPGKEETDINPM 300

Query: 306 SRSAKLRAGMRT 317
           +RSAKLR   R 
Sbjct: 301 ARSAKLRVAERI 312


>gi|293392868|ref|ZP_06637186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera DSM 4582]
 gi|291424727|gb|EFE97938.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera DSM 4582]
          Length = 313

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 175/314 (55%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +F++    FS L  YV ++     +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKSI---EDPRFTIVHGPFSDLSHYVRERELVGKIDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNKTEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L +
Sbjct: 180 TKELADLIADA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  + A          +S+ K  ++P++ +VA 
Sbjct: 239 ISFHSLEDRIVKRFMRHHSRGAQVPAGLPLTEAQLRELGGRNLKSLGK--MMPSEAEVAE 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRIAER 310


>gi|77361427|ref|YP_341002.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           TAC125]
 gi|88909212|sp|Q3IFZ6|RSMH_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76876338|emb|CAI87560.1| S-adenosyl-dependent methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 312

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 176/311 (56%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +HV VL+++ I  L   P  + +D TFG GG+S            + A+D+DP A+ 
Sbjct: 3   AQFEHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGSEGRLQAIDQDPQAIK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++       +F++    FS L            VDG++ D+GVSS Q+D   RGFSF 
Sbjct: 63  SAEKF--ADDPRFAIAHTRFSNLYGVAEQNDLIGKVDGILLDIGVSSPQLDDALRGFSFM 120

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   +G SA+  + +A + D+T ++  LGEEK   RIAH +++ R+  P  T
Sbjct: 121 KDGPLDMRMDPTTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L+SA K LK GG L+V
Sbjct: 181 TKQLADLVDEAV-PVKDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKPGGRLVV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F   +S      R +  ++A     +      K + P+  +V  N R
Sbjct: 240 ISFHSLEDRIVKQFIRKQSRGETLPRGLPLTDAQINQNLTLKAVGKAIKPSAAEVERNPR 299

Query: 306 SRSAKLRAGMR 316
           SRS+ LR   R
Sbjct: 300 SRSSVLRIAQR 310


>gi|323142009|ref|ZP_08076860.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT
           12067]
 gi|322413541|gb|EFY04409.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT
           12067]
          Length = 310

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 166/312 (53%), Gaps = 12/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               H  +LL + +  L      + +D T G  G+S +F    + G  +I +D+D  A++
Sbjct: 1   MEFKHTSILLAESVDFLITDKNGIYVDCTMGGAGHSSAFAAQLEAGGLLIGIDQDDDAIA 60

Query: 73  CGQETMRDYKEQFS----LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            G E + +     +         FSQ+ D +    +DG+ FDLGVSS Q+D  +RGFS+ 
Sbjct: 61  AGSERLLNKFTCKTAVAKSNFEIFSQVLDSMGIDEIDGIFFDLGVSSYQLDTPERGFSYM 120

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM+    + A  +VN    ++L  I+   GEE+ A RIA  IV  R+  P  T
Sbjct: 121 HDGPLDMRMNKEASLDAEYIVNHYKEEELADIIHRYGEERWAKRIAQFIVAARKEKPLTT 180

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+K +   ++ +  HPA R+FQA+RI VNNE+  LA  +  A   LK+GG + 
Sbjct: 181 TFELVDVIKKAIPKGARLDGPHPAKRTFQAIRIEVNNELGILADTMERAVNRLKSGGRIG 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR++K+ FA  +        +         + +      +VP++ +V  N R
Sbjct: 241 VITFHSLEDRIIKQTFAKLAKGCTCPPQLPVCVCGKKPLLRKTGN--IVPSKAEVEENPR 298

Query: 306 SRSAKLRAGMRT 317
           SRSA+LR  ++ 
Sbjct: 299 SRSARLRYAIKI 310


>gi|120555371|ref|YP_959722.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8]
 gi|263456394|sp|A1U3G6|RSMH_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120325220|gb|ABM19535.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8]
          Length = 319

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 176/321 (54%), Gaps = 12/321 (3%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62
           M++       +   H  VLL+  +  L        +DATFG GG+SR        G  ++
Sbjct: 1   MTARQDDQANEGYQHRSVLLDAAVDYLVTDENGRYVDATFGRGGHSRLILGKLGQGGQLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQID 119
            +D+DP A++  +E +     +F  +  +F++L    +      VDGV+ DLGVSS Q+D
Sbjct: 61  GIDKDPEAIAVARE-LASGDSRFQWYHGSFAELDLALERQGWSQVDGVLMDLGVSSPQLD 119

Query: 120 CGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF + GPLDMRM+     SA+  + +A+ +++  ++   GEE+ + RIA  +V+
Sbjct: 120 DASRGFSFMRDGPLDMRMNPQQEPSAAQWLAEADEREIADVIWRYGEERFSRRIARLVVE 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RRQ  P +TT+ L+ L+ + V   + ++ HPATR+FQA+RIF+N E+E+L  GL +A   
Sbjct: 180 RRQEQPIETTRQLAELVAEAVPKKEKHK-HPATRAFQAIRIFINRELEDLEAGLAAAVDR 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L+V+SFHSLEDRLVK+F    +      + +  +         +  K     ++
Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPKLPKGIPVTAEQEESGFQLIGKASKANEQ 298

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           ++  N R+RSA +R   R   
Sbjct: 299 EITENVRARSAVMRVLERKAN 319


>gi|149275993|ref|ZP_01882138.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39]
 gi|149233421|gb|EDM38795.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39]
          Length = 301

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 156/308 (50%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               HVPV+L++ I  LN  P  V +D TFG GG+SR   K       +I+ D+DP A  
Sbjct: 2   ENNYHVPVMLKECIDGLNIKPDGVYVDVTFGGGGHSREILKHLGKDGVLISFDQDPDA-- 59

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              +  +    +F      F+ L++    +  K VDG++ DLGVSS Q D  +RGFS + 
Sbjct: 60  ---QLNKIDDPRFYFVDQNFAFLKNNLRLLGYKTVDGILADLGVSSHQFDVPERGFSTRF 116

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM   G   ASDV+N      L +I GI GE K A  +A+A+V  R   P  + 
Sbjct: 117 ESLLDMRMDKQGALKASDVLNTYTEDQLHKIFGIYGEVKNAKSLANAVVTGRLERPIASL 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D        +   K ++     + FQALRI VN EI  L   L      LK GG L+V+
Sbjct: 177 ADFKRAAAAHIPKGKEHK--YMAQVFQALRIEVNAEITVLESFLMQTADVLKEGGRLVVM 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR VK F A    K    +    +   P  F+ IT+K +V   ++V  N R+RS
Sbjct: 235 SYHSLEDRPVKSFIAKGKFKGEVEKDFFGNELKP--FKVITRKAIVAEPDEVERNSRARS 292

Query: 309 AKLRAGMR 316
           AKLR G +
Sbjct: 293 AKLRIGEK 300


>gi|288929756|ref|ZP_06423599.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328857|gb|EFC67445.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 319

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 17/320 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           +  I    G HVPVLL + +  LN   G V +D TFG GG++R         + + + D+
Sbjct: 3   NDNIITAQGYHVPVLLAESVEALNIVEGGVYVDVTFGGGGHTRHILSKMDGTARLFSFDQ 62

Query: 67  DPFAVSCGQETMRD------YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQ 117
           D  A    +    D        E+F+  ++ F  L +++   GVD    ++ DLGVSS  
Sbjct: 63  DADAEENTRRKSPDGQQPLANDERFTFVRSNFRYLDNWMRYYGVDHVDGILADLGVSSHH 122

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFSF+   PLDMRM+ +   +A+ V+N  + + L  +  + GE +Q+ RIA AI
Sbjct: 123 FDDQERGFSFRFDAPLDMRMNKNAALTAAQVLNTYDEERLADVFFLYGEIRQSRRIASAI 182

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           VK R  A  QTTQ  +++++   +F +        + FQALRI VNNE+  L + L++A 
Sbjct: 183 VKARAKAAVQTTQQFAAIVEP--FFKREREKKEMAKLFQALRIEVNNEMNALKEMLQAAA 240

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L  GG L V+++HSLEDR+VK F  + + +    +        P  F  +  KV+VPT
Sbjct: 241 QWLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPT 298

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            ++   N RSRSAKLR   +
Sbjct: 299 DDEQLRNPRSRSAKLRIAEK 318


>gi|255282562|ref|ZP_05347117.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM
           14469]
 gi|255266855|gb|EET60060.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM
           14469]
          Length = 312

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 170/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + I  LN  P  + +D T G GG+S   C+       ++ +D+D  A++
Sbjct: 1   MEFKHTSVLLGETIDALNINPDGIYVDGTLGGGGHSYEICRRLSGRGRLVGIDQDAAAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E + ++K++ ++ ++ + ++++    +   G DG++ DLGVSS Q+D  DRGF++++
Sbjct: 61  AASERLGEFKDKVTIIRSNYCEMRERLAGIGVTGADGIILDLGVSSYQLDTADRGFTYRE 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A D+VN  +  +L RI+   GE++ A  IA  IV+ R+  P +TT
Sbjct: 121 DAPLDMRMDQRQTRTAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVQAREEKPLETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    +    HPA ++FQA+RI +NNE+  L+  L    + L   G + +
Sbjct: 181 GELIHVIKAAIPMKVRAVGGHPAKKTFQAIRIELNNELGVLSDSLDDMIELLNNKGRICI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F       +  +             + +T+K ++P +E++  N RS
Sbjct: 241 ITFHSLEDRIVKNAFRKNENPCICPKEFPVCVCGRKPKGRVLTRKPILPGEEEMKENSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRVFER 310


>gi|325202777|gb|ADY98231.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240149]
          Length = 316

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A  P     I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|317504120|ref|ZP_07962122.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella salivae DSM 15606]
 gi|315664792|gb|EFV04457.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella salivae DSM 15606]
          Length = 316

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 109/319 (34%), Positives = 168/319 (52%), Gaps = 17/319 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      HVPVLL++ +  LN   G V +D TFG GG+S          +++ + D+D  
Sbjct: 2   IKKAETYHVPVLLKESVDGLNIQSGGVYVDVTFGGGGHSSEILSRLDEQAHLYSFDQDAD 61

Query: 70  AVSC------GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120
           A         G E       +F+  ++ F  L++++       +DG++ DLGVSS   D 
Sbjct: 62  AEQNVMRSEVGAERRFVDDSRFTFVRSNFRYLKNWMRYYGVESIDGLLADLGVSSHHFDD 121

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSF+    LDMRM+   G +A+D+VN  + + L  +  + GE KQ+ R+A A+VK 
Sbjct: 122 ESRGFSFRFDAQLDMRMNKRAGKTAADIVNDYDEEALANLFYLYGEIKQSRRLAAAVVKA 181

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R      TTQDL  +++      +  +     + FQALRI VN+E++ L + L+SA + L
Sbjct: 182 RSQQHIATTQDLLGILEPIFKREREKK--DLAKVFQALRIEVNHEMDALKEMLKSATELL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG L V+++HSLEDR+VK    + + +   ++        P  F  I  KV+VP++ +
Sbjct: 240 KPGGRLSVITYHSLEDRIVKNIMKTGNVEGKRIQDFYGRIETP--FTLINNKVIVPSENE 297

Query: 300 VAFNRRSRSAKLRAGMRTV 318
              N RSRSAKLR   +  
Sbjct: 298 QQENPRSRSAKLRIAEKNE 316


>gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
 gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
          Length = 329

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 142/327 (43%), Positives = 196/327 (59%), Gaps = 17/327 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS+    +   H+PVLLE+V+A L+P PG +I+DATFGAGGY+R     G+ V A DRDP
Sbjct: 1   MSAE-TGSRAPHIPVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGATVHAFDRDP 59

Query: 69  FAVSCGQETMRDYK--EQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDR 123
            A++ G+          +  L    FS++ +        GV GVVFD+GVSSMQ+D   R
Sbjct: 60  DAIAAGKLWGETCGKEPRLVLHPRRFSEIAEGLAEAGIAGVQGVVFDIGVSSMQLDQAAR 119

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GF+F   GPLDMRMS  G SA+D +N+A+  ++  +L   GEE+Q+ RIA AIV  R   
Sbjct: 120 GFAFSSDGPLDMRMSQEGPSAADFLNEADEGEIADVLYRYGEERQSRRIARAIVAAR--- 176

Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           P  TT   +++++K + +  + +       PATRSFQA+RI VN E++EL QGL +AEK 
Sbjct: 177 PLTTTAQFAAVVRKALGYRPDIKGPKAPKDPATRSFQAVRIHVNGELDELVQGLAAAEKV 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPT 296
           L  GG + VVSFHSLEDR+VK+F    +G V A    +P       AVF+  +   + PT
Sbjct: 237 LVPGGRIAVVSFHSLEDRIVKQFLREGAGAVPAGSRHLPQLESKVQAVFEKPSG-AIRPT 295

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIE 323
            E+ A N R+RSA LR  +RT   +  
Sbjct: 296 PEEEARNPRARSATLRCAVRTAAPARA 322


>gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
 gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
          Length = 295

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/307 (39%), Positives = 179/307 (58%), Gaps = 26/307 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H PVLL++ + +L    G V +DAT G GG++ +  K      VIA+DRD  A+    E
Sbjct: 5   YHPPVLLKESLKVLKAEEGGVFVDATLGGGGHTEAILKAHPENRVIAIDRDEEAIERAME 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ Y ++ S++ A FSQ+   +     + V GV+FDLGVS   +   +RGF+  K  PL
Sbjct: 65  RLKPYGDRVSIYHANFSQIDRVLQMEGVERVKGVLFDLGVSHFHLRG-ERGFTVWKEQPL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A +VVN+ + ++L RI+   GEEK A +IA  IVKRR+  P +TT +L+
Sbjct: 124 DMRMDRSQKLTAKEVVNELSERELARIIFRYGEEKFARKIASEIVKRRKRKPIETTTELA 183

Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           S++++ +        + HPA ++FQA+RI+VN E EE+  G+  A + ++ GG L V++F
Sbjct: 184 SIVEEVIPKKLWAGRKKHPAVKTFQAIRIYVNREFEEIETGIPKAAEFVEPGGRLAVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK    +  G                 F  +TKK +VPT+E+V  N  +RSAK
Sbjct: 244 HSLEDRLVKNILRNLEG-----------------FTPVTKKPIVPTEEEVVENPAARSAK 286

Query: 311 LRAGMRT 317
           LRA  R 
Sbjct: 287 LRAAERV 293


>gi|312112902|ref|YP_004010498.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218031|gb|ADP69399.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC
           17100]
          Length = 340

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 140/310 (45%), Positives = 198/310 (63%), Gaps = 6/310 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVLL +V+  L+P  G+  +D TFGAGGY+R+  +    +V+ LDRDP A++      
Sbjct: 31  HIPVLLREVLEALHPGVGERFIDGTFGAGGYARAILEAAHCDVLGLDRDPTAIAGACALE 90

Query: 79  RDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  +  L +  FS+++D         +DGVV DLGVSSMQ+D  +RGFSF + GPLDM
Sbjct: 91  TAFAGRLKLAETPFSEMEDAAHGIGWDALDGVVLDLGVSSMQLDEAERGFSFMRDGPLDM 150

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS SG+SA+DVVN      +  IL   GEE+++  IA AIVK R++APF+ T  L++LI
Sbjct: 151 RMSSSGLSAADVVNTYEKDAIADILYTFGEERRSRAIAAAIVKDRETAPFERTGQLAALI 210

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + +     +  HPATRSFQALR++VN+E+ EL + L +AE+ LK GG L+VVSFHSLED
Sbjct: 211 ARVLGHKPGDPKHPATRSFQALRLYVNDELGELTRALEAAERLLKPGGRLVVVSFHSLED 270

Query: 256 RLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A RSGK       IP   ++    F+   +  V P +++VA N R+RSA+LR 
Sbjct: 271 RIVKRFLAERSGKRAKASRYIPDAGDSTAPTFELRDRHGVEPGEDEVAANPRARSARLRW 330

Query: 314 GMRTVERSIE 323
            +RT    + 
Sbjct: 331 AVRTDAPPLA 340


>gi|332518989|ref|ZP_08395456.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4]
 gi|332044837|gb|EGI81030.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/309 (32%), Positives = 162/309 (52%), Gaps = 17/309 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
            +  H PVLL + +  L+  P  V +D TFG GG+S+   K       + A D+D  A+ 
Sbjct: 2   EMEYHNPVLLNETVDGLDIKPNGVYVDVTFGGGGHSKEILKRLGEHGKLFAFDQDADALE 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +    +F+L    F  ++ ++       VDG++ D GVSS Q D  +RGFS + 
Sbjct: 62  N-----KIDDPRFTLIHENFRYIKRFLRFHGVKEVDGILADFGVSSHQFDVAERGFSTRF 116

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM+     SA  VVN+ + + + ++L   GE + A  +A  IV  R++   +T+
Sbjct: 117 AADLDMRMNQKNDLSAFHVVNEYDEEQIKQVLLQYGELRAAPAMARLIVDYRKNEVIKTS 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L ++++K +     N+I    + +QA+RI VN EIE L + L    + LK  G L ++
Sbjct: 177 DQLKTILKKFLSPKHENKI--LAQIYQAIRIEVNQEIEALKEFLSQTPEILKPNGRLSLI 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK+F  +   +    R +      P   + +  K+++P+ E++  N R+RS
Sbjct: 235 SYHSLEDRLVKRFIRNGLFEGEPERDVFGRFEVP--LKKV-GKLIIPSAEEIKINNRARS 291

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 292 AKLRIAEKI 300


>gi|270263951|ref|ZP_06192219.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera 4Rx13]
 gi|270042144|gb|EFA15240.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera 4Rx13]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 173/312 (55%), Gaps = 15/312 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +F++    FS L  YV ++     +DGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKSI---EDPRFTIVHGPFSDLSHYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM   SG SAS+ + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPSSGQSASEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L +
Sbjct: 180 TKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          T K +   +P+Q++VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRHHSRGAQVPAGLPLTEEQLRGMGGRTLKALGKMMPSQDEVAENP 298

Query: 305 RSRSAKLRAGMR 316
           R+RS+ LR   R
Sbjct: 299 RARSSVLRIAER 310


>gi|325203518|gb|ADY98971.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240355]
          Length = 316

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A  P     I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|212697080|ref|ZP_03305208.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675855|gb|EEB35462.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/305 (38%), Positives = 160/305 (52%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K       +I LD+D  A+   +E
Sbjct: 5   HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLIGLDQDKDAIKAARE 64

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++D+     F+      S + D    K +DG + D+GVSS QID GDRGFS+ K GPLD
Sbjct: 65  NLKDFSNVLFFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPLD 124

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     +A  +VN  ++ +L  I    GEE+ +  IA AIV  R+     TT  L +
Sbjct: 125 MRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLRN 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K+V     N  HP  R FQALRI VN E+E L   L      L  GG L V++FHSL
Sbjct: 185 IVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F   S K +           H    + I+KK ++P+++++  NRRS SAKLR
Sbjct: 242 EDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKLR 301

Query: 313 AGMRT 317
              R 
Sbjct: 302 VCERV 306


>gi|292572190|gb|ADE30105.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii Rp22]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 184/306 (60%), Gaps = 5/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
               H+PV+L +V+A+L P   +  LD TFGAGGYS +       +V +LDRDP  +   
Sbjct: 1   MSQYHIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESV 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +DY E+F+  +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA + VN A+ +++  ++   G E  + RIA +IV+ R++A   +T+ L+ +
Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I  AT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRYSI-GFRKGKIDSATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A                 + IT KV+ P+ +++  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKL 299

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 300 RAAKKI 305


>gi|304383929|ref|ZP_07366386.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973]
 gi|304335007|gb|EFM01280.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973]
          Length = 305

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 156/311 (50%), Gaps = 16/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           +      HVPVLL + +  L   P  V +D TFG GG+SR           + A D+D  
Sbjct: 2   VTTAETYHVPVLLTESVDGLKIRPNGVYVDVTFGGGGHSREILARLGKGGQLYAFDQDAD 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFS 126
           A            ++F+  ++ F  L++++   G++ +   + DLGVSS   D   RGFS
Sbjct: 62  AEQNC-----PDDDRFTFVRSNFRYLKNWIHYYGIEKIDGLLADLGVSSHHFDDETRGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+ + PLDMRM+     +A+D+VN      L+ +    GE K A R+A AIV+ R   P 
Sbjct: 117 FRFNAPLDMRMNKRAKTTAADIVNHYTETQLSDLFYGYGELKNARRMAAAIVRERAENPI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TTQDL+  ++  +   K +      R FQALRI VN E+  L + L SA + L  GG L
Sbjct: 177 VTTQDLTDCMRPLI--RKEHEKKDMARLFQALRIEVNQEMTALKEMLESATELLSDGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++++HSLEDR+VK    + +      +        P   Q I  K  VP+ ++   N R
Sbjct: 235 SIITYHSLEDRMVKNLMKTGNTDGEQKKDFFGRMETP--LQPIGNKPTVPSDDEQQRNPR 292

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   +
Sbjct: 293 SRSAKLRIAEK 303


>gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
 gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
          Length = 307

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
            I  HV V+L K++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   
Sbjct: 1   MIQSHVSVMLNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EEIQQNYGERFDFVETNFAGSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +
Sbjct: 121 MRMSGQGLSAEEFVNAAEAKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAG 314
           RA 
Sbjct: 300 RAA 302


>gi|297566101|ref|YP_003685073.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946]
 gi|296850550|gb|ADH63565.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946]
          Length = 294

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 175/307 (57%), Gaps = 24/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VL ++ +  LN  PG + +DAT G GG+++   + G  V+  D+DP A+   +  + 
Sbjct: 7   HISVLYDEALNYLNVKPGGLYVDATLGGGGHTQGILQRGGRVVGFDQDPAAIERARNLLL 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L +A F  LQ  +     + VDGV+ DLGVSS   D  +RGFS++  GPLD
Sbjct: 67  PGLSLGQLTLVEANFRDLQPKLHALGIERVDGVLADLGVSSFHFDDPERGFSYRLEGPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G +A++VVN+  V++L RIL  LGEE +A RIA  I + R+  P +TT +L+ +
Sbjct: 127 MRMGKEGQTAAEVVNELEVEELARILRELGEEPKAWRIARFIEEARERKPIETTTELAEI 186

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++   F      HPA ++FQALRI+VN+E+  L + L +A   L   G L+V+SFHSLE
Sbjct: 187 VRRATGF--RGAGHPARKTFQALRIYVNDELGALRELLEAAVNVLAPQGRLVVISFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK F                   +    + +TKK + P +E+   N R+RSAKLRA 
Sbjct: 245 DRIVKHFLK-----------------NEPRLRVLTKKPLEPGEEEARENPRARSAKLRAA 287

Query: 315 MRTVERS 321
            R  E +
Sbjct: 288 ERLREAA 294


>gi|326204085|ref|ZP_08193946.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM
           2782]
 gi|325985852|gb|EGD46687.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM
           2782]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 162/313 (51%), Gaps = 11/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               H  VLL++ I  LN     + +D T G  G+S    K       +I LD+D FAV 
Sbjct: 1   MEFKHKSVLLDECIENLNINQDGIYVDGTIGGAGHSSEIYKRLGEKGCLIGLDQDSFAVE 60

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              + + + + Q  F +    F  ++    +     VDG++ DLGVSS Q+D   RGFS+
Sbjct: 61  TSVKRLSEIESQADFKVVNTNFKNIRKACSELGIDEVDGILLDLGVSSHQLDEASRGFSY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM      SA DVVN+ + +D+ RI+   GEEK +SRIA  IV+ R + P +
Sbjct: 121 QHDAPLDMRMDTKSDLSAYDVVNKYSEQDIYRIIRDYGEEKWSSRIAKFIVEARSNKPVE 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ V  S + +  HPA R+FQA+RI VNNE+  L + +      LK  G L
Sbjct: 181 TTYELVDIIKRAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKGEGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F              +         + + +K +V    ++  N 
Sbjct: 241 CIITFHSLEDRIVKLQFNKMVNPCTCPTSFPVCVCGKKPRAKLVNRKPIVSGVSELEENP 300

Query: 305 RSRSAKLRAGMRT 317
           R+RSAKLR   + 
Sbjct: 301 RARSAKLRVLQKI 313


>gi|71909118|ref|YP_286705.1| methyltransferase [Dechloromonas aromatica RCB]
 gi|88909196|sp|Q47A96|RSMH_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71848739|gb|AAZ48235.1| methyltransferase [Dechloromonas aromatica RCB]
          Length = 308

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           HV VLLE+ +  L      V +DATFG GG+SR           ++A+DRDP A++ G E
Sbjct: 7   HVTVLLEEAVGALAIKADGVYVDATFGRGGHSRRILSELNQNGRLVAVDRDPQAIAAGAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                           ++  D    + VDGV+FD+GVSS QID G+RGFSF+   PLDMR
Sbjct: 67  IDDSRFLLVHRAFGELAEAADEAGIRDVDGVLFDVGVSSPQIDDGERGFSFRYDAPLDMR 126

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G +A++ + +A ++D+T ++   GEE+ A +IA  +V  R   P  TT   ++L+
Sbjct: 127 MDTTQGETAAEWLARAEIRDITEVIRNYGEERFAFQIAKKVVAARLEQPIVTTGQFAALV 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++TV   +  +  PATRSFQALRI +N E+ +L   L  A + LK GG L+V+SFHSLED
Sbjct: 187 RETVRTREPGQ-DPATRSFQALRIHINQELRQLEVALPQALELLKPGGRLVVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F   +S      + +          +  +  + + P+  ++  N R+RSA +R  
Sbjct: 246 RIVKNFMRDQSIADAMPKSLPLRADQLPKPKLRLVGRPIKPSAAEIDANPRARSAVMRIA 305

Query: 315 MR 316
            +
Sbjct: 306 EK 307


>gi|156935398|ref|YP_001439314.1| S-adenosyl-methyltransferase MraW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|263447014|sp|A7MIE1|RSMH_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156533652|gb|ABU78478.1| hypothetical protein ESA_03256 [Cronobacter sakazakii ATCC BAA-894]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 15/315 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP    
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQ--- 59

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 60  AIAAAAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+ A + L  GG L V
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVEVLAPGGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304
           +SFHSLEDRLVK+F   +S        +  + A        +      ++P + +VA N 
Sbjct: 239 ISFHSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRELRALGKLMPGEAEVAENP 298

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   RT  
Sbjct: 299 RARSSVLRVAERTGA 313


>gi|15604423|ref|NP_220941.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii str.
           Madrid E]
 gi|8134811|sp|Q9ZCY2|RSMH_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3861117|emb|CAA15017.1| unknown [Rickettsia prowazekii]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 5/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
               H+PV+L +V+A+L P   +  LD TFGAGGYS +       +V +LDRDP  +   
Sbjct: 1   MSQYHIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESV 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +DY E+F+  +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA + VN A+ +++  ++   G E  + RIA +IV+ R++A   +T+ L+ +
Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I  AT++FQA+RI++NNE+EEL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRYSI-GFRKGKIDSATKTFQAIRIYINNELEELEQFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A                 + IT KV+ P+ +++  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKL 299

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 300 RAAKKI 305


>gi|220904376|ref|YP_002479688.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|263447319|sp|B8IZT3|RSMH_DESDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219868675|gb|ACL49010.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 327

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/326 (36%), Positives = 168/326 (51%), Gaps = 12/326 (3%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIA 63
            +TMS     T   HV VL  + +A L+P  G   LD T G GG++ +         +  
Sbjct: 2   IQTMSDTTEPT--RHVSVLPVETLAALDPRAGGRYLDGTLGMGGHASAILSSAPGIELCG 59

Query: 64  LDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           LDRD  A++   + +  +      F    + F++  + +    VDG + D+GVSS+Q+D 
Sbjct: 60  LDRDEEALALAGQRLSSFGGRAHLFHCRYSDFAEALNELGWDKVDGALLDIGVSSLQLDE 119

Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF   GPLDMRM  +    SA   VN+ +   L   +  LGEE QA RIA AIV 
Sbjct: 120 AERGFSFYGDGPLDMRMDQNSAQPSAWHWVNRESFDKLKDCIATLGEEPQAGRIARAIVD 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            RQ     TT  L++L+++    +   +   HPATR+FQALR+ VN+E+ EL + L    
Sbjct: 180 ARQKNTIDTTGQLAALVERAYPAAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 239

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVP 295
             L  GG L V++FHSLEDR+VK+            RH+      H    + + KK V  
Sbjct: 240 TWLPIGGRLAVITFHSLEDRMVKQAMRHWVEGCRCPRHIPRCICGHQPEVRILHKKPVQA 299

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
             E++A N R+ SAKLRA  +  E S
Sbjct: 300 GPEELAANSRAGSAKLRAVEKIAEDS 325


>gi|157368998|ref|YP_001476987.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568]
 gi|262826478|sp|A8G9R9|RSMH_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157320762|gb|ABV39859.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568]
          Length = 313

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 170/312 (54%), Gaps = 15/312 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN       +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRSNGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +        +FS+    FS L  YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKSI---EDPRFSIVHGPFSDLSHYVRERELVGQIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM   SG SAS+ + +A   D+  +L   GEE+ A RIA AIV+R Q  P   
Sbjct: 120 RDGPLDMRMDSSSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNQVDPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       ++   HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V
Sbjct: 180 TKQLADLIANA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  + A        T K +   +P   +VA N 
Sbjct: 239 ISFHSLEDRIVKRFMRHHSRGAQVPAGIPLTEAQLRSMGGRTLKALGKMMPGDAEVAENP 298

Query: 305 RSRSAKLRAGMR 316
           R+RS+ LR   R
Sbjct: 299 RARSSVLRIAER 310


>gi|227486691|ref|ZP_03917007.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235279|gb|EEI85294.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus lactolyticus ATCC
           51172]
          Length = 309

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/313 (32%), Positives = 161/313 (51%), Gaps = 12/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +++   +H PVL  + I  LN  P  +  D T G GG+S+   +       +I +D+D  
Sbjct: 1   MNNMKFEHTPVLYRECIENLNIKPDGIYADLTLGKGGHSKLILEKLSAKGLLIGIDQDKA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFS 126
           A+    E ++DY  +   F   F  +   + + G + +   + D+GVSS QID  +RGFS
Sbjct: 61  AIEAASENLKDYDNKV-FFNTNFENIGKVLTEAGFNKIDGALMDIGVSSYQIDNPERGFS 119

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +   GPLDMRM+     +A  +VN+ +  +LTRI    GEE+ +  IA  IVK R +   
Sbjct: 120 YIHDGPLDMRMNRQNELTAEKIVNECSQDELTRIFFDYGEERFSKAIAKNIVKARANERI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L +++ K+    +   +HP  R FQALRI VN E++ L + + +    +   G L
Sbjct: 180 NTTFKLRNIVMKSA---RFTEVHPEKRVFQALRIEVNRELDVLTKAIDTIIDFIDKDGRL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F   +   +    +      H A  + ITKK +    +++  N 
Sbjct: 237 AIITFHSLEDRIVKNKFKDLATGCICPPEIPVCVCNHVAKVKIITKKPITAKADELRENS 296

Query: 305 RSRSAKLRAGMRT 317
           RS+ AKLR   R 
Sbjct: 297 RSKPAKLRVCQRI 309


>gi|77460902|ref|YP_350409.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf0-1]
 gi|88909213|sp|Q3K736|RSMH_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77384905|gb|ABA76418.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 315

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR           +I  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPDGRLIGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            T+     +F + Q +F++L   V ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -TLAAEDGRFVVVQRSFAELGSVVAERGLTGKVSGILLDLGVSSPQLDDAERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    GISA++ VN A V+++ R+    GEE+ + R+A A+V+RR   PF+ T D
Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDVTPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A + L+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIQVNNELGDLEAGLEAALECLEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F             R++   +        +  K    +  ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVRHVAFEPKIKVHGKAQTASDAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|86140630|ref|ZP_01059189.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832572|gb|EAQ51021.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL++ +  L   P  V +D TFG GG+SR   K       + A D+D  A+  
Sbjct: 1   MDYHNPVLLKETVDGLAIKPDGVYVDVTFGGGGHSREILKRLGDQGKLFAFDQDKDALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + D +         F++    +     VDG++ D GVSS Q D  +RGFS +    
Sbjct: 61  A---LDDPRFTLINENFRFAKRFLRFYGAAKVDGILGDFGVSSHQFDVAERGFSTRFDAK 117

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA  VVN+ + +DL R+L   GE + A ++A  +V  R+    +TT+DL
Sbjct: 118 LDMRMNQDDKLSAYHVVNEYSEEDLGRVLLQYGELRSAPKLARTLVSVRKDKAIETTEDL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +Q  +   + ++     + +QA+RI VN E+E L + L+  E+ LK GG L ++S+H
Sbjct: 178 KQALQSYLPKGREHK--LLAQIYQAIRIEVNQELEVLKEFLQQTEEMLKPGGRLSLISYH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK++  +   +    + +  +   P  F+ +   ++VP++E++  N R+RSAKL
Sbjct: 236 SLEDRLVKRYMRNGLFEGEPEKDIFGNFTVP--FKKV-GGLIVPSKEEIKQNNRARSAKL 292

Query: 312 RAGMR 316
           R   +
Sbjct: 293 RVAEK 297


>gi|317050381|ref|YP_004111497.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5]
 gi|316945465|gb|ADU64941.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5]
          Length = 316

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/324 (37%), Positives = 186/324 (57%), Gaps = 21/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIA 63
           MS+  H     H+PVL + V++ L PA      +++D T G GG+S    +      +I 
Sbjct: 1   MSTTFH-----HIPVLADAVLSSLGPALNAEQPLLVDCTVGGGGHSSLILEHCPSVRIIG 55

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQI 118
           +D+DP A+    + +    E+F+  +  F+QL   +    V     +G ++DLGVSS Q+
Sbjct: 56  IDQDPAALQACSDRL---GERFTPLRGNFAQLHRLLKQANVAPSSVNGFLYDLGVSSHQL 112

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF   GPLDMRM  S  +SA+DVVN  + ++L RI+   GEE+ + R+A  I 
Sbjct: 113 DTPERGFSFLSDGPLDMRMDPSAPLSAADVVNTYSEEELARIIHAYGEERHSRRVARVIA 172

Query: 178 KRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
             R+  PF TT++L+ LI + +  F +N  IHPATR+FQALRI VN E++ +   L SA 
Sbjct: 173 ACRREKPFTTTKELADLIHRDIAKFYRNESIHPATRTFQALRIEVNGELDAITTSLESAL 232

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVP 295
             L+ GG+L V+SFHSLEDR++K+FF   +   +    +      H  + + +T+K ++ 
Sbjct: 233 TYLRPGGILAVISFHSLEDRIIKQFFRQHASTCICPPEVWQCRCQHQPLLEILTRKPLIA 292

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319
            + +   N RSRSAKLR   RT  
Sbjct: 293 DEAEKQLNPRSRSAKLRVARRTSA 316


>gi|313203980|ref|YP_004042637.1| s-adenosyL-methyltransferase mraw [Paludibacter propionicigenes
           WB4]
 gi|312443296|gb|ADQ79652.1| S-adenosyl-methyltransferase MraW [Paludibacter propionicigenes
           WB4]
          Length = 319

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 163/322 (50%), Gaps = 16/322 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++ K+   +S++    I  H+P LL++ I  LN  P  V +D TFG GG+SR   K    
Sbjct: 3   IKKKNIDAVSTSGAEEIAYHIPALLDETITGLNIKPNGVYVDVTFGGGGHSREILKHLGA 62

Query: 59  -SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVS 114
              ++  D+D  A+    +       +F   ++ F  +++   Y     VDG++ DLGVS
Sbjct: 63  DGKLLGFDQDEDAIKNTID-----DPRFIFVRSNFRYMKNFLKYHGIDKVDGILADLGVS 117

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S   D  +RGFSF+  G LDMRM+     +A+ ++N    + L  +  + GE   + +IA
Sbjct: 118 SHHFDEAERGFSFRFDGALDMRMNTKSSFTAAALLNTYTEEQLADVFYLYGELHNSRKIA 177

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
             IV  R SAPF        +++   +F +        R FQALRI VN E++ L   L 
Sbjct: 178 RTIVAARNSAPFDRIFPFIEVLKP--FFGREKEKKDMARVFQALRIEVNKEMDVLKALLD 235

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            + + L   G L V+++HSLEDRLVK F  S + +    +    +   P   +++  KV+
Sbjct: 236 QSIEVLNPQGRLAVLTYHSLEDRLVKNFIRSGNFEGKLEKDFYGNILAP--LKAVNTKVI 293

Query: 294 VPTQEDVAFNRRSRSAKLRAGM 315
           V  + +VA N R+RSAKLR   
Sbjct: 294 VADEAEVARNPRARSAKLRVAE 315


>gi|325198906|gb|ADY94362.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis G2136]
          Length = 316

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 163/303 (53%), Gaps = 10/303 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A        I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTV 318
           RT 
Sbjct: 299 RTA 301


>gi|312866364|ref|ZP_07726582.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415]
 gi|311098058|gb|EFQ56284.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415]
          Length = 316

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L P P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVSVLLHETVDMLAPKPDGIYVDATLGGAGHSAYLLSKLGPKGHLYCFDQDQSAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  +   +  +  F  L+  + +     +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  KLKDYVDRGMVTFIKDNFRNLKADLAEEGVTQIDGILYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA DVVN  + +DL +I    GE+K + +IA  I + R+S P +TT +
Sbjct: 127 PLDMRMNQEADLSAYDVVNTYSYQDLVKIFFKYGEDKFSKQIARKIEQARKSKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LTEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQALELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +                 + +K ++P+Q +++ N R+ SA
Sbjct: 247 FHSLEDRLTKQIFKEASSVDVPKGLPFIPEEMQPKIALVNRKPILPSQGELSVNNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|90580220|ref|ZP_01236027.1| S-adenosyl-methyltransferase [Vibrio angustum S14]
 gi|90438522|gb|EAS63706.1| S-adenosyl-methyltransferase [Vibrio angustum S14]
          Length = 315

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
               +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFEHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q+       +F +    FS ++ Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQKI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA  IV+ R++   +
Sbjct: 119 MRDGPLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKE 178

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +   V   K+   HPATRSFQA+RI++N+E++E+   L  A   L   G 
Sbjct: 179 PLTRTRELASLIAAVSPFKDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F   +S        +  +                K + P+Q+++
Sbjct: 239 LSVISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTLGKAIKPSQDEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
            +N R+RS+ LR   R
Sbjct: 299 GYNTRARSSVLRLAER 314


>gi|288801599|ref|ZP_06407041.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18]
 gi|288335641|gb|EFC74074.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18]
          Length = 314

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/317 (34%), Positives = 171/317 (53%), Gaps = 13/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           I      H+PVLL + I  LN     V +D TFG GG+SR        GS++ + D+D  
Sbjct: 2   IKTAECYHIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEGSHLYSFDQDAD 61

Query: 70  AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRG 124
           A           +  ++F+  ++ F  L++++   GV+ +   + DLGVSS   D   RG
Sbjct: 62  AEQNIDNMGLSEEQVDRFTFVRSNFRYLKNWMQYYGVEYIDGLLADLGVSSHHFDDETRG 121

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+   GI+A+D++N  + + L  IL + GE KQ+ RIA AIVK R   
Sbjct: 122 FSFRFEAPLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQK 181

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            ++TT DL + I+    +++  +     + FQALRI VN+E++ L + L +A + L+ GG
Sbjct: 182 TYKTTNDLLTTIEPFFQWAREKK--DMAKMFQALRIEVNHEMDALKEMLMAATELLRPGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK    S + +    +        P  F+ +  KV+  + ++   N
Sbjct: 240 RLSVITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRTETP--FRLVNNKVITASNDEQERN 297

Query: 304 RRSRSAKLRAGMRTVER 320
            RSRSAKLR   +    
Sbjct: 298 PRSRSAKLRIAEKKANE 314


>gi|292669650|ref|ZP_06603076.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Selenomonas noxia ATCC 43541]
 gi|292648447|gb|EFF66419.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Selenomonas noxia ATCC 43541]
          Length = 310

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 159/306 (51%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HV VL E+ +  LN  P    +D T G  G++            +I +D+D  A++  QE
Sbjct: 5   HVSVLPEETLNALNITPNGTYVDCTLGGAGHAGRIAARLSPEGRLIGIDQDEAAIAAAQE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   Q +L +  F  L   +        DGV+FDLG+SS QID  +RGFS+ +  PL
Sbjct: 65  RLADAACQVTLVRDNFRNLSAILAGAGVDSTDGVLFDLGISSPQIDTAERGFSYMQDAPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA  VVN+    +L  I    GEE+ A RIA  I + R++ P +TT  L 
Sbjct: 125 DMRMDRRAGRSARSVVNEYTAAELMEIFYNYGEERWAKRIAAFIEEERKAHPIETTGQLV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I + V    +    HPA R FQA+RI VN E+  L   L +A +AL+ GG L V++FH
Sbjct: 185 AVIDRAVPKKTRAKGGHPAKRVFQAIRIEVNEELTILEGALTAAVRALRPGGRLAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VKK     +   +   H  +    H    + I  K  + +  + A N R++SAK
Sbjct: 245 SLEDRIVKKTLKRFAQGCICPPHTPVCVCGHTPELRLI-GKPQMASAVECAENPRAKSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRTAEK 309


>gi|52841149|ref|YP_094948.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628260|gb|AAU27001.1| S-adenosylmethyl transferase MraW [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 334

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 167/312 (53%), Gaps = 12/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV 
Sbjct: 26  EMAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQ 85

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++      ++F +F  +F+Q++++         VDG++ DLGVSS Q+D  +RGFSF 
Sbjct: 86  YAKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFM 144

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  T
Sbjct: 145 LQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITT 204

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L  GG L V
Sbjct: 205 TLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAV 263

Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RS
Sbjct: 264 ISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRS 322

Query: 307 RSAKLRAGMRTV 318
           RSA LR G +  
Sbjct: 323 RSAVLRIGEKLA 334


>gi|296329280|ref|ZP_06871781.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153636|gb|EFG94453.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 314

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P    +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIVYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D  +RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKATELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEVITKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|28199742|ref|NP_780056.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa Temecula1]
 gi|28057863|gb|AAO29705.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 322

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 10/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M     H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D
Sbjct: 1   MDGLAPHLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A++   E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGF
Sbjct: 61  KDPEAIAMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K GPLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P
Sbjct: 120 SFAKDGPLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQP 179

Query: 185 FQTTQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
              T  L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+
Sbjct: 180 LLRTVQLAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALR 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L+V+SFHSLEDR+VK+F +  S      R +        + + I +  +   ++++
Sbjct: 240 PGGRLVVISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSA LR   +
Sbjct: 299 EVNPRARSAVLRVAEK 314


>gi|42561121|ref|NP_975572.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|115311585|sp|P62473|RSMH_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42492618|emb|CAE77214.1| MraW methylase family protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320523|gb|ADK69166.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+  
Sbjct: 1   MDKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQ 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +      F L Q  FS L           VDG+++DLGVSS QID   RGFS++  
Sbjct: 61  AKEKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  +   +A  V+N  +   ++ IL   GEE  +  I+  IV+ R      T +
Sbjct: 121 GPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR--PINSTLE 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +  +           + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++
Sbjct: 179 LVEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVIT 238

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLE+++VK  F + +   +   + ++       + F+ + KK + P+  ++  N RS 
Sbjct: 239 FHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHRSH 298

Query: 308 SAKLRAGMR 316
           SAKL    +
Sbjct: 299 SAKLWVIEK 307


>gi|325478632|gb|EGC81744.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H+PV+  + I  LN     V LD T G GG+S+   +       +IALD+D  A+ 
Sbjct: 1   MKFEHIPVIATETIENLNIKSDGVYLDLTLGKGGHSKMILERLSDEGTLIALDQDKEAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129
             +E ++D+        + F ++ + + D G D +   + D+GVSS QID  DRGFS+ K
Sbjct: 61  AAKENLKDFSN-VIFINSNFEKIDEVLRDLGFDYIDGALMDIGVSSYQIDNADRGFSYMK 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+     +A  +VN+ +  +L +I    GEEK +  IA  I+K R+     TT
Sbjct: 120 DGPLDMRMNQENELTAEIIVNEYSQDELEKIFFEYGEEKFSKLIAKNIIKAREDYRIDTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  ++ K++   K+N  HP  R FQALRI VN E++ L   +      L     L ++
Sbjct: 180 FKLKDIVTKSI---KSNEAHPEKRVFQALRIEVNRELDVLKDTIDKVVDHLNKDERLAII 236

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   +   +           H A  + IT+K +  +++++  N R++
Sbjct: 237 TFHSLEDRIVKNKFKDLATDCICPPEFPVCVCNHKAKVKIITRKPITASKKELKENSRAK 296

Query: 308 SAKLRAGMRT 317
            AKLR   R 
Sbjct: 297 PAKLRVCQRI 306


>gi|325847850|ref|ZP_08170072.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480868|gb|EGC83921.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 160/305 (52%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K       ++ LD+D  A+   +E
Sbjct: 5   HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLVGLDQDKDAIKAAKE 64

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++D+     F+      S + D    K +DG + D+GVSS QID GDRGFS+ K GPLD
Sbjct: 65  NLKDFSNVLYFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPLD 124

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     +A  +VN  ++ +L  I    GEE+ +  IA AIV  R+     TT  L +
Sbjct: 125 MRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLRN 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K+V     N  HP  R FQALRI VN E+E L   L      L  GG L V++FHSL
Sbjct: 185 IVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F   S K +           H    + I+KK ++P+++++  NRRS SAKLR
Sbjct: 242 EDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKLR 301

Query: 313 AGMRT 317
              R 
Sbjct: 302 VCERV 306


>gi|227499845|ref|ZP_03929938.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus tetradius ATCC 35098]
 gi|227217954|gb|EEI83227.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus tetradius ATCC 35098]
          Length = 309

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 170/313 (54%), Gaps = 12/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +++   +H+PVL    I  LN     V +D T G GG+S+   +       +IA+D+D  
Sbjct: 1   MNNMKFEHIPVLATDTIKNLNIKKDGVYVDLTLGKGGHSKMILENLSDKGRLIAIDQDKE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   +E ++D+    +   + F + ++ + +     +DG + D+GVSS QID  +RGFS
Sbjct: 61  AIEAAKENLKDFSN-VTFINSNFEKFEEVLANLGLDLIDGALMDIGVSSYQIDNAERGFS 119

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + K GPLDMRM+     +A  VVN+ +  +L RI    GEE+ +  +A  I+K+R     
Sbjct: 120 YMKDGPLDMRMNQDNELTAEIVVNEYSQDELERIFFEYGEERFSKSVARNIIKQRSEGRI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +T  L  +I+K++   K+N  HP  R FQALRI VN E+E L   + +    LK GG +
Sbjct: 180 DSTIKLRDIIRKSI---KSNETHPEKRVFQALRIEVNRELEVLENTIETVVDHLKVGGRI 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            ++SFHSLEDR+VK  F   +   +    +      H A  + IT+K +  T +++  N 
Sbjct: 237 AIISFHSLEDRIVKNKFKDLATSCICPPELPVCVCNHKAKIKVITRKPITATMKELKMNS 296

Query: 305 RSRSAKLRAGMRT 317
           RS+ AKLR G R 
Sbjct: 297 RSKPAKLRVGERI 309


>gi|331703577|ref|YP_004400264.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328802132|emb|CBW54286.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+  
Sbjct: 1   MDKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKRLNQKGFLYAIDQDQIAIDQ 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +      F L Q  FS L           VDG+++DLGVSS QID   RGFS++  
Sbjct: 61  AKEKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  +   +A  V+N  +   ++ IL   GEE  +  I+  IV+ R      T +
Sbjct: 121 GPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR--PINSTLE 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +  +           + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++
Sbjct: 179 LVEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVIT 238

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLE+++VK  F + +   +   + ++       + F+ + KK + P+  ++  N RS 
Sbjct: 239 FHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHRSH 298

Query: 308 SAKLRAGMR 316
           SAKL    +
Sbjct: 299 SAKLWVIEK 307


>gi|54293889|ref|YP_126304.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens]
 gi|54296934|ref|YP_123303.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila str.
           Paris]
 gi|68565457|sp|Q5WXZ4|RSMH_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565459|sp|Q5X6J0|RSMH_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565463|sp|Q5ZX19|RSMH_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53750719|emb|CAH12126.1| hypothetical protein lpp0975 [Legionella pneumophila str. Paris]
 gi|53753721|emb|CAH15179.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      ++F +F  +F+Q++++         VDG++ DLGVSS Q+D  +RGFSF  
Sbjct: 61  AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  TT
Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L  GG L V+
Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RSR
Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRSR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|167745322|ref|ZP_02417449.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662]
 gi|167655043|gb|EDR99172.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662]
          Length = 311

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 99/307 (32%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  VLL++ I  L   P  + +D T G GG++             I +D+D  A+    
Sbjct: 4   EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  ++++ ++ +  +  +   + D     VDG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA D+VN  + ++L  I+   GE+K A  IA  I   R+ AP +TT  L
Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKAPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI  N E+E L   L    + L   G L +++F
Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F           +    +  + +  + IT+K ++PT+E++  N+R++S+
Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|238760089|ref|ZP_04621239.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           aldovae ATCC 35236]
 gi|238701708|gb|EEP94275.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           aldovae ATCC 35236]
          Length = 320

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 171/313 (54%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIDAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDSRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA+D + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMRTV 318
           +RS+ LR   R  
Sbjct: 307 ARSSVLRFAERIN 319


>gi|124003786|ref|ZP_01688634.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134]
 gi|123990841|gb|EAY30308.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134]
          Length = 303

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 14/308 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PV+L++ I  L   P  V +D TFG GG+S++  +       + A D+D  A  
Sbjct: 1   MSKYHQPVMLKECIEGLAINPDGVYVDVTFGGGGHSKAILEQLSEKGKLYAFDQDADAKQ 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E        F L +A F  L+ Y+       VDG++ DLG+SS QID  +RGFS + 
Sbjct: 61  EAKEI---DHPGFYLIRANFRYLKKYLKMYGVSKVDGILADLGISSHQIDTPERGFSTRF 117

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRMS S  ++A DVVN+ +  +L +ILG+ GE K A  +A  IV+ RQ A   T 
Sbjct: 118 DAYLDMRMSESIEVTAQDVVNEYSESELHKILGMYGELKNAKTVASTIVRARQDAAINTV 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++L S +++     +  +     + FQALRI VN EI+ L   L  A + LK  G L+V+
Sbjct: 178 EELKSAVKRHAPRGREFK--FFAQVFQALRIEVNEEIQVLEVMLEQAAEVLKPQGRLVVM 235

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR VK +      +  A + M  +   P   ++I +K++   +E++A N R+RS
Sbjct: 236 SYHSLEDRPVKNYIQKGRFRGEAEKDMFGNVLKP--LRAINRKIITAQEEEIALNNRARS 293

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 294 AKLRIAEK 301


>gi|325269666|ref|ZP_08136279.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella multiformis DSM 16608]
 gi|324988034|gb|EGC20004.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella multiformis DSM 16608]
          Length = 314

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 13/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           I      HVPVLL++ I  LN   G + +D TFG GG+SR        GS++ + D+D  
Sbjct: 2   IRTAEAYHVPVLLDESIEGLNLHRGGIYVDVTFGGGGHSREILSRLDGGSHLYSFDQDAD 61

Query: 70  AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124
           A           +   +F+  ++ F  L++++       +DG++ DLGVSS   D   RG
Sbjct: 62  AEQNTGRMGLSGEQVSRFTFVRSNFRYLKNWMRYYGVDKIDGLLADLGVSSHHFDDETRG 121

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+   G +A+D++N+ +   L  I  + GE KQ+ RIA AIVK R   
Sbjct: 122 FSFRFEAPLDMRMNKRAGQTAADILNEYDEGRLADIFYLYGELKQSRRIAAAIVKARGQQ 181

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           PF+TT DL +  +   +F +        R FQALRI VN+E++ L + L +A + LK GG
Sbjct: 182 PFKTTHDLLAAAEP--FFPRAREKKDLARMFQALRIEVNHEMDALREMLLAATELLKPGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK    S + +    +        P  F+ +  KV+  T ++   N
Sbjct: 240 RLSVITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITATDDEQERN 297

Query: 304 RRSRSAKLRAGMRTVER 320
            RSRSAKLR   +    
Sbjct: 298 PRSRSAKLRIAEKKANE 314


>gi|330501916|ref|YP_004378785.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01]
 gi|328916202|gb|AEB57033.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01]
          Length = 315

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 176/315 (55%), Gaps = 13/315 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +  T+  H+ VLL++ +  L        +D TFG GG+SR   +    G  ++  D+DP
Sbjct: 2   TMTDTL-RHITVLLDEAVEGLAVRADGCYMDGTFGRGGHSRLILQKLGPGGRLLGFDKDP 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRG 124
            A++ G+  +     +F + Q +F++L D          V G++ DLGVSS Q+D  +RG
Sbjct: 61  LAIATGEA-LAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGILLDLGVSSPQLDDPERG 119

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF   GPLDMRM+   G+SA+D +  A+  ++ R++   GEE+ A R+A A+V+RR   
Sbjct: 120 FSFLNDGPLDMRMNPHAGVSAADWIATADEDEIARVMKDYGEERFAKRMARAVVQRRAER 179

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           PF  T DL+ ++ +     +  + +PATR+FQ +RI VNNE+ +L +GL +A + L+ GG
Sbjct: 180 PFTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIHVNNELGDLERGLEAALETLEVGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            L+V+SFHSLEDR+VK+F   ++        R +            +  K V   + ++ 
Sbjct: 239 RLVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLIGKPVYAAEAELK 298

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA +R   +
Sbjct: 299 ANPRSRSAVMRIAEK 313


>gi|227535245|ref|ZP_03965294.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187129|gb|EEI67196.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 313

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L   P    +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    +Q +L    F  L D +       VDG+++DLGVSS Q D   RGFS++  
Sbjct: 62  VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    DL RI    GEE  + +IA  I + R   P  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F   S      R +    A     ++ + +K ++P++E++  N R+ 
Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPNYRLVNRKPILPSEEELTVNHRAH 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  +
Sbjct: 302 SAKLRVIEKIHD 313


>gi|218886065|ref|YP_002435386.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|263446322|sp|B8DP86|RSMH_DESVM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218757019|gb|ACL07918.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 361

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 169/311 (54%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++V+  L P PG   LD T G GG+S +  +       +  LDRD  A+   ++
Sbjct: 26  HVPVLLDEVLEALAPRPGGRYLDGTVGLGGHSAAIMERIGPDGELCCLDRDTTALGLARQ 85

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +   F   ++  +   D +    VDG + D+GVSSMQID  DRGFSF   GPL
Sbjct: 86  RLAPWGGRVHFFHTRYADFEAALDQLGWDKVDGALIDIGVSSMQIDMADRGFSFHADGPL 145

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM   G    AS +VN+A V  L  I+   GE+  A RIA AIV  R + P +TT  L
Sbjct: 146 DMRMDRDGDEAPASRLVNRATVDVLKDIILRYGEDPMAGRIARAIVDARAAGPIETTAQL 205

Query: 192 SSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++++ +         +R HPATR+FQALR+ VN+E+ +L + L      L  GG L V++
Sbjct: 206 AAIVDRAYPAKWRATSRNHPATRTFQALRMAVNDELGQLERFLDRILDRLNPGGRLAVIT 265

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK      S   +  R +      H A    +T+K V  T  ++A N R+ S
Sbjct: 266 FHSLEDRIVKHRLRDESQGCVCPRSVSRCECGHKARVDVLTRKPVTATDAELARNSRASS 325

Query: 309 AKLRAGMRTVE 319
           AKLRA  R  E
Sbjct: 326 AKLRAAQRLAE 336


>gi|256384076|gb|ACU78646.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384908|gb|ACU79477.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455289|gb|ADH21524.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+  
Sbjct: 1   MDKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQ 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +      F L Q  FS L           VDG+++DLGVSS QID   RGFS++  
Sbjct: 61  AKEKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  +   +A  V+N  +   ++ IL   GEE  +  I+  IV+ R      T +
Sbjct: 121 GPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR--PINSTLE 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +  +           + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++
Sbjct: 179 LVEIIKSVLPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVIT 238

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLE+++VK  F + +   +   + ++       + F+ + KK + P+  ++  N RS 
Sbjct: 239 FHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKANLNSKFKLVIKKPIKPSLLELEQNHRSH 298

Query: 308 SAKLRAGMR 316
           SAKL    +
Sbjct: 299 SAKLWVIEK 307


>gi|255533217|ref|YP_003093589.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366]
 gi|255346201|gb|ACU05527.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366]
          Length = 301

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 156/308 (50%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               HVPVLL   I  LN  P  V +D TFG GG+S    K   +   +IA D+DP A  
Sbjct: 2   ENNYHVPVLLAACIDGLNIRPEGVYVDVTFGGGGHSIEILKKLGDKGVLIAFDQDPDA-- 59

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                      +F      F+ L++    +  K VDG++ DLGVSS Q +  +RGFS + 
Sbjct: 60  ---RRNEIDDPRFHFVDQNFAFLKNNLRLLGFKAVDGILADLGVSSHQFNEPERGFSTRF 116

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM   G  +A++V+N      L +I GI GE K A  +A AIV  R   P  T 
Sbjct: 117 DAALDMRMDKQGKLTAAEVLNTYTEDQLHKIFGIYGEVKNAKSLARAIVTGRVERPVLTL 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D  ++    +   K ++     + FQALRI VN E+E L   L      +K GG L+V+
Sbjct: 177 ADFKAVAAAHIPKGKEHK--YMAQVFQALRIEVNAEMEVLENFLSQTADVIKPGGRLVVM 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR VK F A    +    +    +   P  F+++T+K +V   E++  N R+RS
Sbjct: 235 SYHSLEDRPVKNFIAKGKFRGEVDKDFFGNEQKP--FKAVTRKAIVADAEELERNSRARS 292

Query: 309 AKLRAGMR 316
           AKLR G R
Sbjct: 293 AKLRVGER 300


>gi|89074178|ref|ZP_01160677.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34]
 gi|89050114|gb|EAR55640.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34]
          Length = 315

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
               +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFEHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q+       +F +    FS ++ Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQKI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA  IV+ R++   +
Sbjct: 119 MRDGPLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKE 178

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +   V   K+   HPATRSFQA+RI++N+E++E+   L  A   L   G 
Sbjct: 179 PLTRTRELASLIAAVSPFKDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F   +S        +  +                K + P+Q+++
Sbjct: 239 LSVISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQDEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
            +N R+RS+ LR   R
Sbjct: 299 GYNTRARSSVLRLAQR 314


>gi|282859045|ref|ZP_06268181.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010]
 gi|282588213|gb|EFB93382.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010]
          Length = 319

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 167/319 (52%), Gaps = 15/319 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           I      H+PVLL + I  LN   G + +D TFG GG+S         G ++ + D+D  
Sbjct: 2   IKKAESYHIPVLLNESIEGLNIHTGGIYVDVTFGGGGHSGEILSRLPVGCHLYSFDQDLD 61

Query: 70  A---VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           A   ++   E  ++  ++F+  ++ F  L++++       +DG++ DLGVSS   D   R
Sbjct: 62  AEQNLNHLTEKSKELNDKFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDETR 121

Query: 124 GFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           GFSF+             +  +AS+++N+    DL  +  + GE KQ+ RIA AIVK R 
Sbjct: 122 GFSFRFEEAPLDMRMNKNAHKTASNILNEYEEDDLANLFYLYGELKQSRRIASAIVKART 181

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           +   +TT D   +++     ++  +     + FQALRI VN+E+E L + L SA + L  
Sbjct: 182 NQTIKTTTDFLKIVEPLFIRAREKK--DMAKLFQALRIEVNHEMEALKEMLASATELLSP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+++HSLEDR+VK F  + + +    +        P  F+ +  KV+V T+E++ 
Sbjct: 240 GGRLSVITYHSLEDRIVKNFMKAGNAEGKVTQDFFGRIETP--FKLVNNKVIVATEEELE 297

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSAKLR   +  E 
Sbjct: 298 KNPRSRSAKLRIAEKKDEE 316


>gi|254880783|ref|ZP_05253493.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA]
 gi|319639793|ref|ZP_07994523.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A]
 gi|254833576|gb|EET13885.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA]
 gi|317388610|gb|EFV69459.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A]
          Length = 304

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 16/305 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVPVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A     
Sbjct: 8   YHVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +F+  ++ F  L +++      GVD ++ DLGVSS   D  +RGFSF+  G 
Sbjct: 66  ---IVSDSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGK 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G++A+DVVN  + + L  I  + GE K + ++A AIVK R      T  D 
Sbjct: 123 LDMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDF 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +F +        + FQALRI VN E+E L + L +A KALK GG L+V+++H
Sbjct: 183 LEVIKP--FFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKL
Sbjct: 241 SLEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKL 298

Query: 312 RAGMR 316
           R   +
Sbjct: 299 RIAEK 303


>gi|291459281|ref|ZP_06598671.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418535|gb|EFE92254.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 308

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 9/302 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           LL + I  L      V +D T G GG++ S C+       +I +D+D  A+    E ++D
Sbjct: 2   LLRETIEGLAIRADGVYVDGTLGGGGHALSICERLSGRGRLIGIDQDGAAIEAASERLKD 61

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y+++  + +  +  + + +    ++    +  DLGVSS Q+D G+RGFS++    LDMRM
Sbjct: 62  YRDRAVIVRGNYEDIAEILMRLQIERVDGICLDLGVSSYQLDEGERGFSYRTDAALDMRM 121

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              G  +A+D+VN  + + L RI+   GE+  A  IA  IV+ R+    +TT +LS +I 
Sbjct: 122 DQRGERTAADIVNSYSEEALFRIIRDYGEDHFARNIAKHIVQYREKKRIETTLELSGIIS 181

Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +    +    HPA RSFQA+RI +N E+E L   L      L  GG L V+SFHSLED
Sbjct: 182 GAIPARVRALSGHPAKRSFQAIRIELNRELEVLENTLDRMIDLLSEGGRLCVISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK  F +     +        S    +    +TKK ++P++E++  NRRS+SAKLR  
Sbjct: 242 RIVKSKFRTAEKPCICPPDFPVCSCGRKSRGIVLTKKPILPSEEELLENRRSQSAKLRIF 301

Query: 315 MR 316
            +
Sbjct: 302 EK 303


>gi|260591737|ref|ZP_05857195.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319]
 gi|260536021|gb|EEX18638.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319]
          Length = 326

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 171/316 (54%), Gaps = 13/316 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +      HVPVLL   I  LN  P  + +D TFG GG+SR      K G ++ + D+D  
Sbjct: 14  VKTAETYHVPVLLNDSIEGLNIHPNGIYVDVTFGGGGHSREILSRLKKGCHLYSFDQDAD 73

Query: 70  AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRG 124
           A     +     +  ++F+  ++ F  L++++    +D +   + DLGVSS   D   RG
Sbjct: 74  AEQNVSKMGLSEEQIDRFTFIRSNFRYLKNWMRYYSIDHIDGLLADLGVSSHHFDDETRG 133

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+   G +A+D++N+ + + +  IL + GE KQ+ RIA AIVK R+  
Sbjct: 134 FSFRFEAPLDMRMNKRAGRTAADILNEYDEEQIADILYLYGEIKQSRRIAAAIVKAREKR 193

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            F+TT+DL S+++     ++  +     + FQALRI VN+E++ L + L  A + L  GG
Sbjct: 194 TFKTTKDLLSIVEPFFLHAREKK--DMAKMFQALRIEVNHEMDALREMLLGATELLAPGG 251

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK    S + +    +        P  F+ I  KV+  +  +   N
Sbjct: 252 RLSVITYHSLEDRMVKNIMKSGNVEGKVKQDFYGRRETP--FRLINNKVITASNAEQELN 309

Query: 304 RRSRSAKLRAGMRTVE 319
            RSRSAKLR   +  +
Sbjct: 310 PRSRSAKLRIAEKKAD 325


>gi|194099359|ref|YP_002002459.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae NCCP11945]
 gi|239999615|ref|ZP_04719539.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|240014790|ref|ZP_04721703.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI18]
 gi|240017238|ref|ZP_04723778.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA6140]
 gi|240081125|ref|ZP_04725668.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|240113337|ref|ZP_04727827.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|240121313|ref|ZP_04734275.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID24-1]
 gi|240124146|ref|ZP_04737102.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|260439867|ref|ZP_05793683.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
 gi|193934649|gb|ACF30473.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|317164866|gb|ADV08407.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 306

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 12/309 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK+F    S          +  ++      + + +  + P + ++A N R+RSA LR  
Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGR-ALKPGEAEIAANPRARSAVLRVA 297

Query: 315 MRTVERSIE 323
            RT     E
Sbjct: 298 ERTAGPIPE 306


>gi|238786715|ref|ZP_04630516.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           frederiksenii ATCC 33641]
 gi|238725083|gb|EEQ16722.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           frederiksenii ATCC 33641]
          Length = 320

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 119/320 (37%), Positives = 172/320 (53%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 7   VVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQ 66

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS L  YV +      +DGV+ DLGVSS Q+D  +RGF
Sbjct: 67  AIEAAKSI---TDPRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGF 123

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM    G+SA+D + +A+  D+  +L   GEE+ A R+A AIV+R  + P
Sbjct: 124 SFMRDGPLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQP 183

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T++L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 184 MTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGR 242

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK F    S        +  + A          +S+ K  ++P   +
Sbjct: 243 LSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRSLKSVGK--MMPPDAE 300

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   R   
Sbjct: 301 VAENPRARSSVLRFAERLKA 320


>gi|254303471|ref|ZP_04970829.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent
           methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323663|gb|EDK88913.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent
           methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 314

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 171/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVKNPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D  DRGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ +TKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIVTKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|90413032|ref|ZP_01221030.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin
           cell envelope biogenesis [Photobacterium profundum 3TCK]
 gi|90326047|gb|EAS42486.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin
           cell envelope biogenesis [Photobacterium profundum 3TCK]
          Length = 315

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 167/316 (52%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
               +H+ VLL + +  L   P  + +D TFG GG+SR           +  +DRDP A+
Sbjct: 2   SEQFEHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q        +FS+    FS +  Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQSI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-- 184
            + GPLDMRM  + GISA++ + +A   D+  +L   GEE+ A RIA  IV+ R++    
Sbjct: 119 MRDGPLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKA 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +   V   ++   HPATRSFQA+RI++N+E++E+   L  A K L   G 
Sbjct: 179 PLTRTTELAALISNVSPFRDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S           +             +  K + P+++++
Sbjct: 239 LSVISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
             N+R+RS+ LR   R
Sbjct: 299 GDNKRARSSVLRLAER 314


>gi|311113332|ref|YP_003984554.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931]
 gi|310944826|gb|ADP41120.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931]
          Length = 364

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 177/314 (56%), Gaps = 10/314 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
                HVPV+L++ + LL P       V++D T G GG++ +  +  SN+  I +DRD  
Sbjct: 48  QAQERHVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQ 107

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +  + ++F      +  ++D +       VDGV+ DLGVSSMQ+D   RGF+
Sbjct: 108 AHAIAVERLARFGDRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFA 167

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+     +A  VVN+ +   L RI+   GEEK A+RIA  IV++R+  PF
Sbjct: 168 YSYDAPLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPF 227

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L + IQK V  + +    HPA R+FQALRI VN+E+E L + + +A  AL+ GG 
Sbjct: 228 TTTGELVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGR 287

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            + +S+HSLED++VK+     +         +  + H    + IT+    PT+ ++A N 
Sbjct: 288 FVAMSYHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENP 347

Query: 305 RSRSAKLRAGMRTV 318
           R+ SAKLRAG +  
Sbjct: 348 RAASAKLRAGEKIK 361


>gi|327479635|gb|AEA82945.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri DSM 4166]
          Length = 315

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL++ +A L+       LD TFG GG+SR   +       ++  D+DP A++ GQ 
Sbjct: 9   HITVLLDEAVAALSVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V        V G++ DLGVSS Q+D   RGFSF   GP
Sbjct: 69  -LAAEDGRFVVVQRSFAELGDEVAQRGWMGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SAS+ +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL
Sbjct: 128 LDMRMDPSRGVSASEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  + +PATR+FQ LRI +NNE+ +L  GL +A +AL+ GG L+V+SFH
Sbjct: 188 AKVLTDANPAWEKGK-NPATRAFQGLRIHINNELGDLECGLDAALEALEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    +        R +            +  K    ++ +V  N RSRSA
Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLIGKPQYASEAEVKANPRSRSA 306

Query: 310 KLRAGMRT 317
            +R   + 
Sbjct: 307 VMRVAEKV 314


>gi|68171490|ref|ZP_00544874.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999096|gb|EAM85763.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 297

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL +++ +LNP  GKV +DATFGAGGY+R+  K     V A+D+D       ++ 
Sbjct: 1   MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + D+  +     + FS+++  +     K VDG+VFD+GVSSMQ++   RGFSF K GPLD
Sbjct: 61  VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120

Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  S S + AS  VN A  +++  ++   G EK + +IA AI + R+  P +TT +L+
Sbjct: 121 MRMSTSTSNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  +  SKN+ I PATR+FQA+RI+VN E+EEL QG+  +   L  GG +IVVSFHS
Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F S       +         P  FQ I KKV+ P+ E++  N RSRSAKLR
Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292

Query: 313 AGMRT 317
           A ++ 
Sbjct: 293 AILKI 297


>gi|260596507|ref|YP_003209078.1| 16S rRNA m(4)C1402 methyltranserfase [Cronobacter turicensis z3032]
 gi|260215684|emb|CBA28014.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Cronobacter turicensis z3032]
          Length = 313

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 19/317 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP    
Sbjct: 3   ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQ--- 59

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 60  AIAAAAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+ A   L  GG L V
Sbjct: 180 TKELAEVV-AAATPIKDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVDVLAPGGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAF 302
           +SFHSLEDRLVK+F   +S        +  + A          +++ K  ++P + +VA 
Sbjct: 239 ISFHSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRDLRALGK--LMPGEAEVAE 296

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   RT  
Sbjct: 297 NPRARSSVLRIAERTGA 313


>gi|269120594|ref|YP_003308771.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC
           33386]
 gi|268614472|gb|ACZ08840.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC
           33386]
          Length = 308

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 173/308 (56%), Gaps = 10/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H PVL ++VI  +      V LD T G  G+++   +  S    VIA+D+D  A+  
Sbjct: 1   MDYHKPVLFDEVIENIVTNKEGVYLDCTLGGAGHTQGILENTSEKGVVIAIDQDDDAIEF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
             + + +YKE+  +F+  F  L   +   G +    ++ D+GVSS Q+D  +RGFS++  
Sbjct: 61  AGKKLENYKERIKIFKDNFKNLDTVLYMAGYEKVSGILMDIGVSSYQLDDPERGFSYKYE 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ +  ISA +V+N+ + +++  IL   GEE ++ RIA  I + R+    +TT 
Sbjct: 121 AKLDMRMNKNAKISAYEVINEFSEQEIADILYKYGEEPKSRRIARKITEARKEKKIETTT 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++ + +   K+ + HPA R+FQA+R++VN E+E L + L  A + L+  G L+V++
Sbjct: 181 ELADIVIRAIG--KSMKRHPAKRTFQAVRMYVNQELEVLEEALEKAVELLEDRGRLLVIT 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F           +  I      ++ + ITKK +V  + ++  N R+ S
Sbjct: 239 FHSLEDRIVKNKFREFEKPCKCPPNIPICVCGKESLGKVITKKPIVAGELELNDNSRAHS 298

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 299 AKLRVFER 306


>gi|51473750|ref|YP_067507.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str.
           Wilmington]
 gi|116241372|sp|Q68WG7|RSMH_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51460062|gb|AAU04025.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 5/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
               H+PV+L +V+ +L P   +  LD TFGAGGYS +  K    +V +LD DP  +   
Sbjct: 1   MSQYHIPVMLSEVLEVLAPKGYESYLDCTFGAGGYSNAILKSCYCSVTSLDCDPHVIERV 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +DY E+FS  +  F+     +  +  DG+V DLGVSSMQ+D   RGFSF   GPLD
Sbjct: 61  EQIKQDYGERFSFIKTNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA + VN A+ ++++ ++   G E  + RIA  I+K R+ A   +T+ L+ +
Sbjct: 121 MRMSAQGFSAEEFVNTADEEEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++   +  +I  AT++FQA+RI++NNE+ EL + L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRYSI-GFRKGKIDSATKTFQAIRIYINNELGELERFLANVKNILKKNGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S K +A                 + IT KV+ P+ +++  N R+RSAKL
Sbjct: 240 DRIVKNFFKENSAKPVARSKYAKDEIKIDQNKWLEIITHKVLTPSSQEIRLNVRARSAKL 299

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 300 RAAKKI 305


>gi|148360438|ref|YP_001251645.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str.
           Corby]
 gi|263456280|sp|A5IFZ9|RSMH_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148282211|gb|ABQ56299.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str.
           Corby]
 gi|307609707|emb|CBW99217.1| hypothetical protein LPW_09981 [Legionella pneumophila 130b]
          Length = 308

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      ++F +F  +F+Q++++         VDG++ DLGVSS Q+D  +RGFSF  
Sbjct: 61  AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  TT
Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L   G L V+
Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPRGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RSR
Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|166031196|ref|ZP_02234025.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC
           27755]
 gi|166029043|gb|EDR47800.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC
           27755]
          Length = 311

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + I  LN  P  + +D T G GG++   C+      +++ +D+D  A+ 
Sbjct: 1   MEFKHKSVLLNETIDGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIVGIDQDAAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                ++D+ E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +RGFS+++
Sbjct: 61  AASARLKDFGEKVTIVRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYRE 120

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN     DL R++   GE+K A  IA  IV+ R   P +TT
Sbjct: 121 DAPLDMRMDTRQKMTARDIVNDYTEADLYRVIRDYGEDKFAKNIAKHIVQARAVKPVETT 180

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +LS +I+ ++      +  HPA R+FQA+RI +N E++ L   L      L  GG L +
Sbjct: 181 AELSEIIRASIPMKFQKKSGHPAKRTFQAIRIELNRELDVLRDSLDDMIDLLNPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                     +    ITKK ++P++E++ +N RS
Sbjct: 241 ITFHSLEDRIVKSAFRKNENPCTCPPDFPVCVCGKKSKGSIITKKPILPSEEELEYNSRS 300

Query: 307 RSAKLRAGM 315
           +SAKLR   
Sbjct: 301 KSAKLRIFE 309


>gi|150003970|ref|YP_001298714.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482]
 gi|294778005|ref|ZP_06743439.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510]
 gi|263445994|sp|A6L078|RSMH_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149932394|gb|ABR39092.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482]
 gi|294448063|gb|EFG16629.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510]
          Length = 304

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 16/305 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVPVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A     
Sbjct: 8   YHVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +F+  ++ F  L +++      GVD ++ DLGVSS   D  +RGFSF+  G 
Sbjct: 66  ---IVSDSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGK 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G++A+DVVN  + + L  I  + GE K + ++A AIVK R      T  D 
Sbjct: 123 LDMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDF 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++H
Sbjct: 183 LEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKL
Sbjct: 241 SLEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKL 298

Query: 312 RAGMR 316
           R   +
Sbjct: 299 RIAEK 303


>gi|254787005|ref|YP_003074434.1| S-adenosyl-methyltransferase MraW [Teredinibacter turnerae T7901]
 gi|262825811|sp|C5BP42|RSMH_TERTT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237684519|gb|ACR11783.1| SAM-dependent methyltransferase MraW [Teredinibacter turnerae
           T7901]
          Length = 311

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +   I  H  VLL++ +  L      V +D TFG GG+SR+  +       ++A D+DP 
Sbjct: 1   MTQEI--HYSVLLKESVDALVTNADGVYIDGTFGRGGHSRAVLQKLSPQGRLLAFDKDPE 58

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDR 123
           AV+ G+E +     +FS+   +F  +  +        +  + GV+ DLGVSS Q+D  +R
Sbjct: 59  AVAYGRE-LAGSDNRFSMVHDSFVNMASHWASAAHANNWSLSGVLLDLGVSSPQLDQAER 117

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF   GPLDMRM  S G +A++ +N A   +L  ++   GEE+ A R+A AIV  R+ 
Sbjct: 118 GFSFMHDGPLDMRMDNSSGQTAAEWINTAEESELAFVIKEYGEERFARRMARAIVAEREK 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           +P   T  L++++ +     +  + HPATR+FQA+RIF+N E+++L   L  + + L +G
Sbjct: 178 SPITQTLRLANIVSEANPKWEKGK-HPATRAFQAIRIFINRELDDLTATLAQSLEMLPSG 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+V+SFHSLEDR+VK+F   ++        M  +            K       ++A 
Sbjct: 237 GRLVVISFHSLEDRIVKRFMRDQARGKQFPIGMPVTEDMLEKKLKTLGKAQRAGDRELAE 296

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSA LR   +
Sbjct: 297 NIRSRSATLRVAEK 310


>gi|209524297|ref|ZP_03272847.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328]
 gi|209495388|gb|EDZ95693.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328]
          Length = 324

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 154/306 (50%), Gaps = 28/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PVL  ++I  L    G   LDAT G GG++R   +      V A+DRD  A++  +  
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTRMIFQAAPNVRVTAIDRDLEAIAAAKSM 78

Query: 78  MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + D       +   +   FSQ          DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTIGNCGARLKFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA++++N  + K L  I    GEE+ + RIA  IV+  +     T    +
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVE--KRPFQTTEHLAN 194

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++        +  RIHPATR FQALRI VN E+  L   L +A   LK  G + ++SFHS
Sbjct: 195 AIANCVPSKYRYGRIHPATRVFQALRIAVNGELTALETFLETAPTWLKPRGRIGIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK  F                  H  + + +TKK + P  +++  N R+RSAKLR
Sbjct: 255 LEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEINQNPRARSAKLR 297

Query: 313 AGMRTV 318
              R+ 
Sbjct: 298 LAERSA 303


>gi|262831577|sp|A4VIH0|RSMH_PSEU5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 315

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL++ +A LN       LD TFG GG+SR   +       ++  D+DP A++ GQ 
Sbjct: 9   HITVLLDEAVAALNVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V        V G++ DLGVSS Q+D   RGFSF   GP
Sbjct: 69  -LAAEDGRFVVVQRSFAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL
Sbjct: 128 LDMRMDPSRGVSAAEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  +  PATR+FQ LRI +NNE+ +L +GL +A  AL+ GG L+V+SFH
Sbjct: 188 AKVLTDANPAWEKGK-SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    +        R +            +  K    ++ +V  N RSRSA
Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLIGKPQYASEAEVKANPRSRSA 306

Query: 310 KLRAGMRT 317
            +R   + 
Sbjct: 307 VMRVAEKV 314


>gi|315186407|gb|EFU20167.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6578]
          Length = 324

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 114/325 (35%), Positives = 174/325 (53%), Gaps = 7/325 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +      HVPVL E+V A L+     +++DAT G GG+S +  +      ++ +D DP  
Sbjct: 1   MVSMEIVHVPVLREEVGAFLSVR-DGLVVDATLGEGGHSEALLESHPGIRLLGVDADPIM 59

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +S   E +  + ++  L Q  F + L+ +  +    G++ DLG+SS  ++   RGFSF +
Sbjct: 60  LSRAGERLSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLR 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR+S    + ASDVVN  +  +L  +    GEE  + RIA AIV  R+  P  T+
Sbjct: 120 REPLDMRLSPYLPMKASDVVNTYSETELVDVFSRFGEEPFSRRIARAIVSERRKMPITTS 179

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ ++ K V    +  RIHPATR FQALRI VN E+E + + +R+  + L  GG + V
Sbjct: 180 DHLAEVVMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+ F   +          I       + + +TKK V P +E+V  N  S
Sbjct: 240 ISFHSLEDRIVKRLFRFYASACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRTNPAS 299

Query: 307 RSAKLRAGMRTVERSIEDDSFVHLP 331
           RSA+LR   +  + +   +    LP
Sbjct: 300 RSARLRVLEKVRDAAHLREEGHALP 324


>gi|269104116|ref|ZP_06156813.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268164014|gb|EEZ42510.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 315

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
               +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFEHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSKLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q+       +F++    FS ++ Y+ ++     VDG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQKI---DDPRFNIIHGPFSGMEKYMEERDLIGRVDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G +AS+ +  A+  D+  +L   GEE+ A RIA  IV+ R+    +
Sbjct: 119 MRDGPLDMRMDPTSGQAASEWLATADASDIAWVLKEFGEERFAKRIARGIVEHREDPEKE 178

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +   V   K+   HPATRSFQA+RI++N+E++E+A  L  A   L  GG 
Sbjct: 179 PLTRTLQLANLIAQVSPFKDKHKHPATRSFQAIRIYINSELDEIATALNGAVNILAPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F  ++S        +  +             +  K + P+Q ++
Sbjct: 239 LSVISFHSLEDRMVKRFMRNKSKGPEIPAGLPLTEEQIKALGSADLKLASKAIKPSQNEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
            +N R+RS+ LR   R
Sbjct: 299 GYNARARSSVLRLAER 314


>gi|238752424|ref|ZP_04613901.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           rohdei ATCC 43380]
 gi|238709357|gb|EEQ01598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           rohdei ATCC 43380]
          Length = 320

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 175/314 (55%), Gaps = 19/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP AV   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPLAVEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA+D + +A+ +D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAADWLMKASAEDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       ++   HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 307 ARSSVLRFAERIKE 320


>gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
 gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
          Length = 328

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 137/320 (42%), Positives = 188/320 (58%), Gaps = 8/320 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76
             HV VL++ ++  + P    V +D TFGAGGY+R     G+  VI +DRDP       +
Sbjct: 5   APHVSVLIKPLVRAVAPVQ-GVWVDGTFGAGGYTRDLLAAGADKVIGIDRDPSVFPLSAD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 ++  L   TFS++ + V +  VDGVV DLGVSSMQID  +RGFSFQK GPLDMR
Sbjct: 64  WRAAMPDRVDLRLGTFSEMDEIVGEM-VDGVVLDLGVSSMQIDQAERGFSFQKEGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  SG +A+D+ N    ++L  IL + GEE+ + RIA AIV+ R   P   T +L+ ++ 
Sbjct: 123 MGDSGPTAADLCNTLPEEELANILYLFGEERASRRIARAIVQAR---PITRTLELAEIVS 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   K  + HPATRSFQALRI VN+E  +L  GL +AE+ LK GG L VV+FHS+EDR
Sbjct: 180 SCLPRQKPGQSHPATRSFQALRIAVNDEYRQLYDGLAAAERILKPGGYLAVVTFHSVEDR 239

Query: 257 LVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F   R+G      R+     + P  F  +T+K + P  ++VA N RSRSA LR   
Sbjct: 240 MVKRFMQLRAGAVGGGSRYAPEVQSAPPAFTLVTRKAIQPDDDEVAANPRSRSALLRVAK 299

Query: 316 RTVERSIEDDSF-VHLPRLP 334
           RT   +   D   + +P L 
Sbjct: 300 RTDAPAEMLDPGEIGMPTLE 319


>gi|325294232|ref|YP_004280746.1| ribosomal RNA small subunit methyltransferase H [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064680|gb|ADY72687.1| Ribosomal RNA small subunit methyltransferase H [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 296

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 26/309 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H PVLL++ I LL     ++ +DAT G GG++ +  +      VIA+DRD  A+    +
Sbjct: 6   YHPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEANPENRVIAIDRDEEAIERAMK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ S++ A FSQ+ +       K V+GV+FDLGVS   +   +RGF+  +  PL
Sbjct: 66  RLERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFDLGVSHFHLRG-NRGFTVWEEQPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A DVVN+ + K+L  I+   GEEK A +IA  IV+RR+  P +TT +L+
Sbjct: 125 DMRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKFARKIAREIVRRRKIKPIETTLELA 184

Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++++ +        + HPA ++FQA+RIFVN E +E+ +G+  A   +   G ++V++F
Sbjct: 185 KIVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNREFQEIEEGIPEAANHVACSGRIVVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK  F +  G                 F+ ITKK V PT+E++  N  SRSAK
Sbjct: 245 HSLEDRLVKNIFRNLEG-----------------FKVITKKPVEPTEEEIKKNPASRSAK 287

Query: 311 LRAGMRTVE 319
           LRA  R  E
Sbjct: 288 LRAIERVCE 296


>gi|88657585|ref|YP_507355.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123493393|sp|Q2GGS8|RSMH_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88599042|gb|ABD44511.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 297

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL +++ +LNP  GKV +DATFGAGGY+R+  K     V A+D+D       ++ 
Sbjct: 1   MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + D+  +     + FS+++  +     K VDG+VFD+GVSSMQ++   RGFSF K GPLD
Sbjct: 61  VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120

Query: 135 MRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRMS   S + AS  VN A  +++  ++   G EK + +IA AI + R+  P +TT +L+
Sbjct: 121 MRMSTSISNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  +  SKN+ I PATR+FQA+RI+VN E+EEL QG+  +   L  GG +IVVSFHS
Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F S       +         P  FQ I KKV+ P+ E++  N RSRSAKLR
Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292

Query: 313 AGMRT 317
           A ++ 
Sbjct: 293 AILKI 297


>gi|240116316|ref|ZP_04730378.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|240118603|ref|ZP_04732665.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|240128816|ref|ZP_04741477.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 306

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 12/309 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK+F    S          +  ++      + + +  + P + ++A N R+RSA LR  
Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGR-ALKPGEAEIAANPRARSAVLRVA 297

Query: 315 MRTVERSIE 323
            RT     E
Sbjct: 298 ERTAGPIPE 306


>gi|54310311|ref|YP_131331.1| S-adenosyl-methyltransferase MraW [Photobacterium profundum SS9]
 gi|50402223|sp|P62475|RSMH_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46914752|emb|CAG21529.1| putative S-adenosylmethionine-dependent methyltransferaseinvolved
           in cell envelope biogenesis [Photobacterium profundum
           SS9]
          Length = 315

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 168/316 (53%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
               +H+ VLL + +  L   P  + +D TFG GG+SR           +  +DRDP A+
Sbjct: 2   SEQFEHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q        +FS+    FS +  Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQTI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + GISA++ + +A   D+  +L   GEE+ A RIA  IV+ R++   +
Sbjct: 119 MRDGPLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKK 178

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +   V   ++   HPATRSFQA+RI++N+E++E+   L  A K L   G 
Sbjct: 179 PLTRTKELAALISDVSPFRDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S           +             +  K + P+++++
Sbjct: 239 LSVISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
             N+R+RS+ LR   R
Sbjct: 299 GDNKRARSSVLRLAER 314


>gi|325954324|ref|YP_004237984.1| ribosomal RNA small subunit methyltransferase H [Weeksella virosa
           DSM 16922]
 gi|323436942|gb|ADX67406.1| Ribosomal RNA small subunit methyltransferase H [Weeksella virosa
           DSM 16922]
          Length = 301

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 105/316 (33%), Positives = 167/316 (52%), Gaps = 23/316 (7%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
            M+S+       H PVLL++ +  L   P  V +D TFG GG+SR           + A 
Sbjct: 1   MMNSS------YHNPVLLQESVDALVVNPSGVYVDCTFGGGGHSREILSRLDDNGRLYAF 54

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCG 121
           D+D  A        +   E+F L    F  L++   +   K VDG++ DLGVSS Q D  
Sbjct: 55  DQDEDAKQN-----KIEDERFELIDQNFRYLKNNLRFRGVKQVDGILADLGVSSHQFDTP 109

Query: 122 DRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS +  G LDMRM+ +   SA ++VN+ +   L  I    GE K + R+A  I+K R
Sbjct: 110 ERGFSIRFDGELDMRMNINSSLSAKNIVNEYDEDQLADIFYNYGELKGSRRLASEIIKAR 169

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            +   +T + L  +     +  KN       + FQALRI VN+E+  L + L  + + ++
Sbjct: 170 NNQSIETIEHLKDIFS---FIPKNKENKFFAQVFQALRIEVNDEMAALREMLLQSGEIVR 226

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G L+V+S+HSLEDRLVK++  +   +    R +  + + P  F+ +  KV+VP+++++
Sbjct: 227 PEGRLVVISYHSLEDRLVKRYMRNGVFEGEPERDIYGNWSAP--FKPLQSKVIVPSEKEI 284

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAK+R  ++
Sbjct: 285 EENSRARSAKMRIAVK 300


>gi|282880611|ref|ZP_06289317.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS
           5C-B1]
 gi|281305506|gb|EFA97560.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS
           5C-B1]
          Length = 312

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      HVPVLLE+ I  LN  P  + +DATFG GG+S           ++ + D+D  
Sbjct: 3   IKTAGSYHVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDLD 62

Query: 70  AVSCGQE-----TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           A    Q+      ++D                 Y   + +DG++ DLGVSS   D  +RG
Sbjct: 63  AEKNIQQEGHEVLLQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENRG 122

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+    ++A+DV+N  N + L  I  + GE K A RIA  +VK R   
Sbjct: 123 FSFRFDAPLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQK 182

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              +T DL   ++      +  +     + FQALRI VN+E+E L + L SA++ L  GG
Sbjct: 183 NITSTHDLIQAVEAVFGKVREKK--DLAKLFQALRIEVNHEMEALKELLNSAQELLTTGG 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V+++HSLEDR+VK    + + +    +           F+ +  KV+ PT ++   N
Sbjct: 241 RLVVITYHSLEDRMVKNIMKTGNVQGKVQQDFFGRIE--TTFKLLNNKVITPTPQEQQEN 298

Query: 304 RRSRSAKLRAGMRT 317
            RSRSAKLR   + 
Sbjct: 299 PRSRSAKLRIAEKI 312


>gi|330811587|ref|YP_004356049.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379695|gb|AEA71045.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 315

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 176/308 (57%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR        G  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPGGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++     V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELASEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    GISA++ VN A V+++ R+    GEE+ + R+A A+V+RR   PF+ T D
Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDIKPFERTGD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEVGLEAALEALEIGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    ++ ++  N R+RS
Sbjct: 246 HSLEDRIVKLFMRKLTKGEADNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|24378941|ref|NP_720896.1| S-adenosyl-methyltransferase MraW [Streptococcus mutans UA159]
 gi|30173045|sp|Q8DVM7|RSMH_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24376827|gb|AAN58202.1|AE014891_6 conserved hypoyhetical protein [Streptococcus mutans UA159]
          Length = 316

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I +L+  P  + +DAT G  G+S           ++   D+D  A+   + 
Sbjct: 7   HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y    Q S  +  F  L+  + D     +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  + +DL R+    GE+K + +IA  I   R+    +TT +
Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + L  A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   +   +              F  + +K ++P   +++ N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNARELSENNRAHSA 306

Query: 310 KLRAGMRTVE 319
           KLR   +   
Sbjct: 307 KLRVIQKIRN 316


>gi|296106496|ref|YP_003618196.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648397|gb|ADG24244.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99
           Alcoy]
          Length = 308

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      ++F +F  +F+Q++++         VDG++ DLGVSS Q+D  +RGFSF  
Sbjct: 61  AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  TT
Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L   G L V+
Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEECLDVLGPRGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RSR
Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|225568665|ref|ZP_03777690.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM
           15053]
 gi|225162593|gb|EEG75212.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 167/307 (54%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ I  LN  P    +D T G GG++   C+   N   ++ +D+D  A++   
Sbjct: 4   EHKSVLLDETINGLNIRPDGTYVDGTLGGGGHAYEICRHLGNKGSIVGIDQDAAAITAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  +       VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  ARLKDFGEKVTIVRSNYCDMKSQLHKLGIDRVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  I   R+    +TT  L
Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIAAARRERSIETTGQL 183

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++ +      +  HP+ R+FQA+RI +N E+E L   L      LK GG L +++F
Sbjct: 184 TEIIRQAIPMKYQKKSGHPSKRTFQAIRIELNRELEVLRDSLDEMIDLLKPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F                     +    +T+K ++P +E++ +N R++SA
Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPSDFPVCVCGKESKGSILTRKPILPGEEELEYNSRAKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|293381714|ref|ZP_06627695.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1]
 gi|290921761|gb|EFD98782.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1]
          Length = 315

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  L P  G + +DATFG GG ++          ++  D+D +A+  
Sbjct: 1   MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGDAKYLLSKIDTGTLVGFDQDEYAIKS 60

Query: 74  GQETMR-----DYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +         D + +  L    FS L+          G+DG+ +DLGVSS Q D  DRG
Sbjct: 61  AKLNFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM  S    A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  
Sbjct: 121 FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I+  +    +    HPA +SFQALR+ VN+E++ L   L  A K L+ G
Sbjct: 181 PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VK+ F   S   +        +      + +  K +V +  ++  
Sbjct: 241 GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 301 NNRSHSAKLRVAEK 314


>gi|319944706|ref|ZP_08018970.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia
           mirabilis ATCC 51599]
 gi|319741955|gb|EFV94378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia
           mirabilis ATCC 51599]
          Length = 329

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 173/313 (55%), Gaps = 14/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           + G H+PVLL + +A L   P  V +D TFG GG+SR   +       ++ALDRDP AV+
Sbjct: 13  SSGAHLPVLLHEAVAALAIRPDGVYVDGTFGRGGHSRHILQALGPKGRLLALDRDPEAVA 72

Query: 73  CGQETMRDYKE-QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +   ++  + +F +  A FS L + +       +DG++ DLG+SS Q+D   RGFSF 
Sbjct: 73  AARAWKQESGDARFEIVHARFSSLDEVLDAHGLTHIDGLLLDLGISSPQVDDPRRGFSFT 132

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--- 184
             GPLDMRM  + G+SA + + QA V+ +T +L   G+E+ A  IA  I  RR       
Sbjct: 133 GDGPLDMRMDPTVGLSAHEWLMQATVEQITEVLKRDGDERFAFPIAKEIAARRDQTDGQG 192

Query: 185 -FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T Q    +        KN+  +PATR+FQALRI  N+E  ELA+ L  A + L  GG
Sbjct: 193 IQTTRQLADLVAGVIRRRQKNSAKNPATRTFQALRIHTNDEGGELARVLNVALRRLATGG 252

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+SFHS EDR+VK+F A  +G+      +  +     + +S+ +  V+P + +VA N
Sbjct: 253 RLSVISFHSNEDRVVKQFIARHAGRDAERHPVTGAWLAEPLLKSLGR--VLPGEAEVATN 310

Query: 304 RRSRSAKLRAGMR 316
            R+RSA LR   R
Sbjct: 311 PRARSAILRVAER 323


>gi|254451868|ref|ZP_05065305.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238]
 gi|198266274|gb|EDY90544.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238]
          Length = 325

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 144/323 (44%), Positives = 187/323 (57%), Gaps = 8/323 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVS 72
                 H+PVL+  +IA  +P      LD TFG GGY++     G+  VI +DRDP    
Sbjct: 4   TDDTAPHIPVLIGPLIAACSPIS-GTWLDGTFGVGGYTQRLLDAGANKVIGVDRDPAVFK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             Q           L + TFS L     D  +DG+V DLGVSSMQID  +RGFSF + GP
Sbjct: 63  MAQ--WAVDNPAVELVEDTFSNLDAVASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGP 118

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN+ +  DL  IL   GEE+ + RIA  IV++R   P  TT  L+
Sbjct: 119 LDMRMGQEGRSAADIVNETDETDLADILYTYGEERASRRIARKIVEQRDREPITTTLRLA 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI+  +  SK  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L VV+FHS
Sbjct: 179 KLIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKTGGYLAVVTFHS 238

Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           +EDR+VK+F   R G    A R+          F+ +TKK      ++VA N RSRSAKL
Sbjct: 239 VEDRMVKRFLQQRGGGMGNANRYSPVLETEKPAFEIVTKKARAADDDEVAQNPRSRSAKL 298

Query: 312 RAGMRTVERSIE-DDSFVHLPRL 333
           R   RT   S   D S + +P+L
Sbjct: 299 RVARRTDAPSGSVDRSKLGMPQL 321


>gi|57239214|ref|YP_180350.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579172|ref|YP_197384.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Welgevonden]
 gi|68565416|sp|Q5HB44|RSMH_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57161293|emb|CAH58214.1| putative S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417798|emb|CAI27002.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 301

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL++++ +L+P  G + +DATFG+GGYSR+        V A+D+D +  +  ++ 
Sbjct: 2   YHTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKL 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             D+  +   F   FS++Q  + +  +     VVFD+GVSSMQ++   RGFSF K+GPLD
Sbjct: 62  SNDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLD 121

Query: 135 MRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRMS   SG+ A   VN  +  ++  ++   G EK + +IA AIV  R      TT +L+
Sbjct: 122 MRMSTSLSGVDARMFVNTVSEVEMANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I+  V  SKN+ I PATR+FQA+RI+VN E+EEL +G+  A   L  GG +IV+SFHS
Sbjct: 182 SIIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F             +        FQ I KK++ PT E++  N R+RSAKLR
Sbjct: 242 LEDRIVKVIFKLLCDGKSVNLLNLGLG-----FQLINKKIIRPTAEEIHSNPRARSAKLR 296

Query: 313 AGMR 316
           A ++
Sbjct: 297 AILK 300


>gi|238754428|ref|ZP_04615783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           ruckeri ATCC 29473]
 gi|238707257|gb|EEP99619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           ruckeri ATCC 29473]
          Length = 304

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 168/307 (54%), Gaps = 15/307 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           LL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +     
Sbjct: 2   LLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 58

Query: 81  YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 59  TDPRFSIVHGPFSELAHYVRELDLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 118

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    GISA++ + +A   D+  +L   GEE+ A R+A AIV+R  + P   T +L++LI
Sbjct: 119 MDPSRGISAAEWLMKAGADDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTTELANLI 178

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 179 ANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALEGALEVLAPAGRLSVISFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRSAKLR 312
           R+VK F  ++S        +  +            K V   +P+  +VA N R+RS+ LR
Sbjct: 238 RIVKNFIRNQSRGPKVPAGLPLTEEQLQSLGGRNLKAVGKMMPSDAEVAENPRARSSVLR 297

Query: 313 AGMRTVE 319
              R   
Sbjct: 298 FAERINA 304


>gi|289547926|ref|YP_003472914.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484]
 gi|289181543|gb|ADC88787.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484]
          Length = 290

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 132/304 (43%), Positives = 181/304 (59%), Gaps = 24/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVLLE    LL    GK+ +D T GAGG++R   +      VI +DRDP A+   +E 
Sbjct: 5   HFPVLLETATDLLLGNGGKLYVDCTVGAGGHTRRILEKNPQAYVIGIDRDPQALKLAEEN 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +R+++ +FSL+ A F  L + +  +    VDG +FDLG+S MQ+    RGFSFQ+   LD
Sbjct: 65  LREFEGRFSLYHANFVHLDEVLLQEGVEQVDGFLFDLGMSMMQLKS-ARGFSFQRDEFLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S   +A  VVN+ + +DL RIL   GEE  ASRIA AIV RR+  P +TT +L  
Sbjct: 124 MRMDPSDPITAYHVVNRYSQRDLERILREYGEEPYASRIARAIVLRRKEKPIETTGELVQ 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++   V + +  RIHPATR FQA+RI VN E+  L + L    K L+ GG L+V+SFHSL
Sbjct: 184 IVLSVVPY-RRGRIHPATRVFQAIRIEVNGELRNLKEALPKTLKFLRKGGRLVVISFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK FF   S ++                + +TKK + P++E++  N  SRSAKLRA
Sbjct: 243 EDRIVKNFFKEHSHEI----------------KPLTKKPITPSREEIEKNPPSRSAKLRA 286

Query: 314 GMRT 317
           G + 
Sbjct: 287 GEKV 290


>gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 299

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/295 (41%), Positives = 179/295 (60%), Gaps = 5/295 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK 82
           +L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E  ++Y 
Sbjct: 1   MLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYG 60

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS  G+
Sbjct: 61  ERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDMRMSGQGL 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +++ ++   
Sbjct: 121 SAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIVRSSI-GF 179

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           +  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLEDR+VK FF
Sbjct: 180 RKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLEDRIVKNFF 239

Query: 263 ASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
              S K +        +         + IT K + P+ ++V  N R+RSAKLRA 
Sbjct: 240 KENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAA 294


>gi|212551099|ref|YP_002309416.1| S-adenosyl-methyltransferase MraW [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226709918|sp|B6YS33|RSMH_AZOPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212549337|dbj|BAG84005.1| S-adenosyl-methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 304

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
             ++  H+PVLL++ +  LN   G + +D TFG GG+S+          ++   D+D  +
Sbjct: 3   KTSVYHHIPVLLKESVDGLNVCSGGIYVDVTFGGGGHSKEILVRLGNTGHLYGFDQDEDS 62

Query: 71  VSCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                    D +  F      + +   D+   K +DG++ DLGVSS+  D  +RGFSF+ 
Sbjct: 63  EKN---IFSDIRFTFVRSNFRYLAHFMDWHNVKEIDGLLADLGVSSIHFDDCNRGFSFRF 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+   G +A+D++N  +   L  +  + GE K ++ IAHAIV+ R     QT 
Sbjct: 120 IGNLDMRMNQRKGETAADILNTYSENKLIDMFDLYGELKNSASIAHAIVQARMQREIQTV 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           QD   +++  V   K  +     + FQALRI VN E++ L + L  A++ L++GG + ++
Sbjct: 180 QDFLDILKPFVRKGKVEK--QLAQIFQALRIEVNKELDALKEMLIQAKQLLRSGGRIAII 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDRLVK FF + S      R    +   P  F+ I  +V+V + E+V  N RSRS
Sbjct: 238 TYHSLEDRLVKFFFKTGSFYEKIERDFYGNFLSP--FKIINHRVIVASDEEVKRNPRSRS 295

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 296 AKLRIAEKI 304


>gi|261401195|ref|ZP_05987320.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970]
 gi|269208876|gb|EEZ75331.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970]
          Length = 319

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 118/317 (37%), Positives = 166/317 (52%), Gaps = 11/317 (3%)

Query: 13  IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           +  T    H+ VL  + +  L      V +D TFG GG+SR           ++  D+DP
Sbjct: 1   MSETENYRHITVLPYEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDP 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            AV+  +E +    ++ S+    F+  Q  + D     VDG +FDLGVSS QID   RGF
Sbjct: 61  RAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGF 119

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P
Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ L  + V  ++     PATR+FQA+RIF+N E+EE+   L      LK GG 
Sbjct: 180 IDTTRKLAQLAAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303
           L V++FHSLEDR+VK+F    S      R      A  P     I  K + P   +VA N
Sbjct: 239 LAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAAN 298

Query: 304 RRSRSAKLRAGMRTVER 320
            R+RSA LR   RT   
Sbjct: 299 PRARSAVLRVAERTAGP 315


>gi|256821906|ref|YP_003145869.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069]
 gi|256795445|gb|ACV26101.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069]
          Length = 311

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
            T  +H  VLLE+ +  L   P  + +D TFG GG+SR+          +I  D+D  A+
Sbjct: 2   STKQEHDAVLLEEAVEALVIDPNGIYIDCTFGRGGHSRAILSHLSEEGRLIGFDKDLQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           + G++ ++    +F++   +FS    ++        V GV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AVGEQ-LQQEDARFNIVHESFSLLEQEVSKRGWVGEVTGVLMDLGVSSPQLDQAERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G +A   +   + +D+       GEE+ A RIA AIV++R  AP  
Sbjct: 121 MQDGPLDMRMDTTRGQTAEQWIANTDEEDMVWAFKAFGEERYAKRIARAIVEKRAKAPIT 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T+ L+ +I +     + ++ HPATR FQA+RI VN E+++L   L      LK GG L+
Sbjct: 181 RTKQLADIISEAHPRWEKHK-HPATRCFQAIRIAVNRELDDLKDTLEQVLNVLKVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
            +SFHSLEDR+VK+F   ++        +  +            K       ++  N R+
Sbjct: 240 AISFHSLEDRIVKQFIQKQAQGQNFPAGLPITEDMINRRMKKVGKFTKAGDSELERNIRA 299

Query: 307 RSAKLRAGMR 316
           RSA +R   +
Sbjct: 300 RSAVMRVAEK 309


>gi|152980341|ref|YP_001354713.1| S-adenosyl-methyltransferase MraW [Janthinobacterium sp. Marseille]
 gi|263456176|sp|A6T2G6|RSMH_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151280418|gb|ABR88828.1| S-adenosyl-methyltransferase [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 13/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVI 62
           M++        H  VLL++ +  L         V +D TFG GG+SR   +       ++
Sbjct: 1   MNADAVQQYQ-HRTVLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLL 59

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           A D+D  A++          E      AT S+       K VDGV+ DLG+SS Q+D   
Sbjct: 60  AFDKDTQAIANAATIDDQRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDAT 119

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    G+SA++ +     + + +++   GEE+ A +IA AIV RR 
Sbjct: 120 RGFSFRADGPLDMRMDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRA 179

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  +T+ L+ ++ +TV   +     PATR+FQA+RIF+N E+EEL   L  A + L  
Sbjct: 180 VEPISSTRQLAEIVARTVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRYLAP 238

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQED 299
            G L+V+SFHSLEDR+VK+F A ++      R +     +      + +++  V P+  +
Sbjct: 239 HGRLVVISFHSLEDRIVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSR--VKPSAAE 296

Query: 300 VAFNRRSRSAKLRAGMR 316
           ++ N R+RSA +R   R
Sbjct: 297 ISENPRARSAVMRVAER 313


>gi|89055260|ref|YP_510711.1| S-adenosyl-methyltransferase MraW [Jannaschia sp. CCS1]
 gi|122498265|sp|Q28NM6|RSMH_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88864809|gb|ABD55686.1| methyltransferase [Jannaschia sp. CCS1]
          Length = 327

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 142/329 (43%), Positives = 190/329 (57%), Gaps = 7/329 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+  I      H+PVLL  ++  + P    V LD TFGAGGY+R   + G++ VI +DRD
Sbjct: 1   MTDEI--DKAPHIPVLLGAILREVAPVS-GVWLDGTFGAGGYARGLLEGGADTVIGVDRD 57

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A     +    Y +   L + TFS L     +  +DGV  DLGVSSMQ+D  +RGFSF
Sbjct: 58  PLAFEMAADWAGSYGDALRLKEGTFSNLDTLADE-PLDGVALDLGVSSMQLDLAERGFSF 116

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRM   G+SA D+VN A  K L  IL   GEE+ A RIA AIV  R      +
Sbjct: 117 MRDGPLDMRMGQIGVSAEDLVNDAPEKLLADILFQYGEERAARRIAKAIVAERLKCRINS 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++K +   K  + HPATRSFQA+RI VN+E  +LAQGL +AE+AL+ GG L V
Sbjct: 177 TLQLAGIVEKCLPSKKPGQSHPATRSFQAIRIAVNDEFGQLAQGLMAAERALRPGGKLAV 236

Query: 248 VSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS EDR+VKKF + R S      R+   + A    F    +K + P  +++A N R+
Sbjct: 237 VTFHSSEDRIVKKFMSERSSTGGGGSRYAPEAAAKVPGFTLTPRKAIPPDADEIARNTRA 296

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLP 334
           RSAKLR   RT   +       + LP+L 
Sbjct: 297 RSAKLRIATRTDAPAQPVAPETLGLPQLE 325


>gi|313156840|gb|EFR56280.1| S-adenosyl-methyltransferase MraW [Alistipes sp. HGB5]
          Length = 368

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 16/316 (5%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           +  +    H PVLL++ + LL   P    +D TFG GG+SR   +    G  + A D+D 
Sbjct: 62  SATNMSQYHTPVLLKESVDLLAVDPAGTYVDLTFGGGGHSRRILEKLGPGGRLYAFDQDR 121

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
              +           +F   ++ F  L+        + VDG++ DLGVSS   D  +RGF
Sbjct: 122 DTRANC-----PDDGRFHYVESNFRFLRGALRLREVEQVDGILADLGVSSHHFDAVERGF 176

Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM+  G  +A+ VVN      LTR+LG  GE +   +IA+ IV+ R++AP
Sbjct: 177 SFRGEAPLDMRMNQRGALTAARVVNGYPADALTRLLGEWGELETPWKIANCIVRAREAAP 236

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TT  L   ++      K +     T+ FQALRI VN E+E L   L  + K L+ GG 
Sbjct: 237 IETTAQLVEAVKPCT--PKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGR 294

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+S+HSLEDRLVK F  S +      +        P  F+ IT+K VVPT E++  N 
Sbjct: 295 LVVISYHSLEDRLVKNFLRSGNFSGSVEKDFFGRALTP--FEIITRKAVVPTAEELERNP 352

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLRA  +    
Sbjct: 353 RSRSAKLRAAAKRENE 368


>gi|58617225|ref|YP_196424.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Gardel]
 gi|68565410|sp|Q5FH93|RSMH_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58416837|emb|CAI27950.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str.
           Gardel]
          Length = 301

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL++++ +L+P  G + +DATFG+GGYSR+        V A+D+D +  +  ++ 
Sbjct: 2   YHTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKL 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             D+  +   F   FS++Q  + +  +     VVFD+GVSSMQ++   RGFSF K+GPLD
Sbjct: 62  SHDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLD 121

Query: 135 MRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRMS   SG+ A   VN  +  ++  ++   G EK + +IA AIV  R      TT +L+
Sbjct: 122 MRMSTSLSGVDARMFVNTVSEVEIANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I+  V  SKN+ I PATR+FQA+RI+VN E+EEL +G+  A   L  GG +IV+SFHS
Sbjct: 182 SIIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F             +        FQ I KK++ PT E++  N R+RSAKLR
Sbjct: 242 LEDRIVKVMFKLLCDGKSVNLLNLGLG-----FQLINKKIIRPTAEEIHSNPRARSAKLR 296

Query: 313 AGMR 316
           A ++
Sbjct: 297 AILK 300


>gi|50914761|ref|YP_060733.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10394]
 gi|50903835|gb|AAT87550.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 337

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 103/327 (31%), Positives = 173/327 (52%), Gaps = 15/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68

Query: 60  --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +       +DG+++DLG
Sbjct: 69  EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++
Sbjct: 249 SIQEAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K ++P+  ++A N+R+ SAKLR   + 
Sbjct: 309 KPILPSHSELAANKRAHSAKLRVAKKI 335


>gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
 gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
          Length = 329

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 131/309 (42%), Positives = 187/309 (60%), Gaps = 7/309 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78
           H+PVL ++V+  L P  G V++D TFGAGGY+ +        V A+DRDP AV+ G    
Sbjct: 16  HIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHALA 75

Query: 79  RDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  + ++   TF  ++          VDG+  D+GVSS QID   RGFSF+  GPLDM
Sbjct: 76  ARHPGRLTVLDGTFGCMESLLAAHGITRVDGIALDIGVSSPQIDDPSRGFSFRFDGPLDM 135

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+D+VN+ +  ++  I+   GEE+ + R+A AIV RR+ AP   T DL+ ++
Sbjct: 136 RMGSHGTTAADIVNERDEAEIADIVWRYGEERHSRRVARAIVARRREAPITRTLDLAEIV 195

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V  SK+  I PATR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FHSLED
Sbjct: 196 RSVVPKSKDG-IDPATRTFQALRIAVNDELGELERGLAAAERLLAPGGRLAVVTFHSLED 254

Query: 256 RLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F  SRS    A    +  P++A    F+ I +  V P   ++A N R+RSA+LR+
Sbjct: 255 RVVKEFLRSRSAAAPAPSRHLPAPADAPAPTFRLIARSGVTPAPAELAANPRARSARLRS 314

Query: 314 GMRTVERSI 322
             RT   + 
Sbjct: 315 AERTSAPAR 323


>gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256]
          Length = 325

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 135/316 (42%), Positives = 197/316 (62%), Gaps = 10/316 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL++VIA L  APG+  +DATFGAGGY+R+    G+ VIA DRDP A++ G+  + 
Sbjct: 10  HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGAEVIACDRDPDAIAGGEALVA 69

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +   + +L    F ++   + ++G+D    + FD+GVSSMQ+D G+RGFSFQK GPLDMR
Sbjct: 70  EADGRLTLIHGRFGEIDRLLAERGIDAVDGITFDIGVSSMQLDQGERGFSFQKDGPLDMR 129

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+  G SA+D +N+A+  ++  +L   G+E+Q+ R+A AIV  R   P   T +L+S+++
Sbjct: 130 MAQEGESAADWLNRADEYEIADVLYHYGDERQSRRVARAIVAAR---PLTRTSELASVVR 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +         PAT+SFQA+RI +N E++EL  GL +AE+ L+ GG L VVSFHS EDR
Sbjct: 187 KALRHPPGAPKDPATKSFQAIRIHINRELDELVAGLAAAERVLRPGGRLAVVSFHSTEDR 246

Query: 257 LVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK F   RSG   A         + A  A F++  +K V P + + A N R+RSA LR+
Sbjct: 247 IVKHFLRERSGGDAAGSRHRPAPTAAARAATFETPARK-VRPGKAEEARNPRARSATLRS 305

Query: 314 GMRTVERSIEDDSFVH 329
            +RT   +   +S   
Sbjct: 306 AVRTAAPAWPGNSMKE 321


>gi|297194883|ref|ZP_06912281.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152504|gb|EFH31797.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 318

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + +L PA   PG V++D T G GG+S +  +      ++ALDRD  A
Sbjct: 2   SQTRHVPVMLQRCLDMLAPALRTPGGVVVDCTLGLGGHSEALLEQFPQTRLVALDRDTEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+ +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSGERLARFGERATLVHAVYDELPDVLDRLGIPRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 122 AQDAPLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A  AL  GG +
Sbjct: 182 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVSALAVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT E++A NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPEQYQPRLKLLTRGAELPTDEEIAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R  E
Sbjct: 302 AAPARLRGAERIRE 315


>gi|182682489|ref|YP_001830649.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23]
 gi|182632599|gb|ACB93375.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23]
 gi|307578769|gb|ADN62738.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 328

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 13  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 72

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 73  AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 131

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 132 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 191

Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 192 LAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 251

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F +  S      R +        + + I +  +   ++++  N R+
Sbjct: 252 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 310

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 311 RSAVLRVAEK 320


>gi|71898210|ref|ZP_00680384.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|71731949|gb|EAO34006.1| methyltransferase [Xylella fastidiosa Ann-1]
          Length = 340

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 25  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 85  AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203

Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 204 LAELIASVMLRTKSGGCKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F +  S      R +        + + I +  +   ++++  N R+
Sbjct: 264 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 323 RSAVLRVAEK 332


>gi|326333502|ref|ZP_08199743.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium
           Broad-1]
 gi|325948702|gb|EGD40801.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium
           Broad-1]
          Length = 336

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 121/324 (37%), Positives = 185/324 (57%), Gaps = 9/324 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           T   HVPV+L++++ LL PA   G V++D T G GG++ +  +   GS VI +DRD +A+
Sbjct: 7   TNQKHVPVMLDRIVDLLAPALADGGVLVDCTTGHGGHTEAVLERIPGSRVIGIDRDTYAL 66

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  + ++++   A + ++ D V ++    V  V+FDLGVSSMQ+D  +RGF++ 
Sbjct: 67  GIAGERLARFGDRWTGVHAVYDEILDVVAEQGLDEVQAVLFDLGVSSMQLDQRERGFAYA 126

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G +A+DV+N  +  DLTRIL   GEEK A +IAHA+VKRR+  PF T
Sbjct: 127 EDAPLDMRMDATRGQTAADVLNTYSAADLTRILRDYGEEKFAKKIAHAVVKRREKQPFTT 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  L+   +    +    HPA R+FQALR+ VN+E+  L   L ++ +A+  GG ++
Sbjct: 187 SGPLVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELGALRTALPASLEAVGVGGRVV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V S+HSLEDRL K+ FA  +   +              F+ +T+     T+ ++  N R+
Sbjct: 247 VESYHSLEDRLTKRAFAEATKLDVPPDLPFVPPDAEPSFRLLTRGAEQATEAEIEENPRA 306

Query: 307 RSAKLRAGMRTVERSIEDDSFVHL 330
            S +LRA  R   RS   D     
Sbjct: 307 ASVRLRAVERVKPRSNPRDKTAKP 330


>gi|220933941|ref|YP_002512840.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7]
 gi|262825935|sp|B8GMM1|RSMH_THISH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219995251|gb|ACL71853.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7]
          Length = 314

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 166/308 (53%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + LD TFG GG+S    +       +IALDRDP A +    
Sbjct: 9   HRAVLLEEAVEALAVRPDGIYLDGTFGRGGHSGRILERLGPDGRLIALDRDPEAEAEAAR 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  E+F   + +F  LQ           +DGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 69  RFGD-DERFHFERCSFEMLQQVTDRLGISGRLDGVLLDLGVSSPQLDTPERGFSFMSDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA+  + +AN  ++  +L   GEE+ A RIA  IV+ RQ  P + T+ L
Sbjct: 128 LDMRMDPESGESAAAWLARANEDEIAWVLKEYGEERFARRIARRIVETRQEMPLERTRQL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V F + ++ HPATRSFQA+RI VN+E+E L + L      L  GG L V+SFH
Sbjct: 188 AELIAEAVPFKERHK-HPATRSFQAIRIRVNDELETLPRCLEQIPALLAPGGRLAVISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F   ++      R +    +A       +  + +   + ++  N R+RSA 
Sbjct: 247 SLEDRMVKRFLRDQAEGERLPRGLPVQGDARRGQTLRLVGRAIRAGEAELDQNPRARSAV 306

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 307 LRVAERLA 314


>gi|330446835|ref|ZP_08310486.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491026|dbj|GAA04983.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 315

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 165/316 (52%), Gaps = 17/316 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
               +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A+
Sbjct: 2   SEQFEHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSQLGENGRLYSIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  Q+       +F +    FS ++ Y+  +     VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AEAQKI---NDPRFEIIHGPFSGMEKYMEARDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA  IV+ R++   +
Sbjct: 119 MRDGPLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKE 178

Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     + +   V   K+   HPATRSFQA+RI++N+E++E+   L  A   L   G 
Sbjct: 179 PLTRTRQLASLIAEVSPFKDKHKHPATRSFQAIRIYINSELDEIQTALNGAVNILAPEGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +                K + P+Q ++
Sbjct: 239 LSVISFHSLEDRMVKRFIRKESKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQTEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RS+ LR   R
Sbjct: 299 GHNTRARSSVLRLAER 314


>gi|70732392|ref|YP_262148.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5]
 gi|88909211|sp|Q4K6I5|RSMH_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68346691|gb|AAY94297.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5]
          Length = 315

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 173/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++     V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVVVQRSFAELGSEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    GISA+  +  A V+++ R+    GEE+ + R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGISAAQFIATAPVEEIARVFKEYGEERFSGRMARAVVERREIQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALESLEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F             R++            I  K    ++ ++  N R+RS
Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|163752984|ref|ZP_02160108.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1]
 gi|161326716|gb|EDP98041.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1]
          Length = 298

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVLL++ +  LN     V +D TFG GG+S+           + A D+D  A+  
Sbjct: 1   MEYHNPVLLKETVDGLNIKEDGVYVDVTFGGGGHSKEILNRLGENGKLYAFDQDQDALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +       +F+L    F  L+    +   K VDG++ D GVSS Q D  +RGFS +  
Sbjct: 61  TID-----DSRFTLIHQNFRHLKKFLRFYGIKKVDGILGDFGVSSHQFDVAERGFSLRFE 115

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   G ISA  VVN+ + +DL  IL + GE + A  IA  IV  R   P +TT+
Sbjct: 116 ADLDMRMDQEGEISAYHVVNEYSEEDLRSILSLYGEVRNAKGIAAQIVSARSEEPIKTTE 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L   +Q+ +   + ++     + +QA+RI VN EIE L + L   ++ L+ GG L ++S
Sbjct: 176 ELRVALQRFLPKHREHK--VLAQIYQAIRIEVNQEIEVLKEFLLQTQELLEKGGRLSLIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK++  +   +    +        P  F+ +  K+++P+ E++  N R+RSA
Sbjct: 234 YHSLEDRLVKRYIRNGLFEGEPEKDFYGRVEVP--FKKV-GKLIIPSNEEIKTNNRARSA 290

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 291 KLRIAER 297


>gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 289

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/306 (39%), Positives = 180/306 (58%), Gaps = 24/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H PVLLE+   LL    G++ LD T G GG+++   +      VI +DRD  A+   +E
Sbjct: 1   MHTPVLLEESTDLLLENSGELYLDCTLGLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++ + ++++A F+ L + +  +    VDG++ DLGVS  Q+   +RGFSFQ   PL
Sbjct: 61  NLKEFEGRIAIYKADFADLDEVLRAEGVERVDGILLDLGVSMFQLKS-ERGFSFQIDAPL 119

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A  VVN+ + K+L RIL   GEE+ + +IA AIV+ R+  P +TT++L+
Sbjct: 120 DMRMDKDQKLTAYKVVNEYSEKELARILWEYGEERLSRKIARAIVQHRREKPIETTKELA 179

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L+        ++ R HPAT++FQA+RI VN E+E L   L      L   G L+V+SFH
Sbjct: 180 ELVSSLYPARMRHGRTHPATKTFQAIRIEVNRELESLKTALGKTPDLLNPKGRLVVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK FF  RS                  F+ +TKK ++P+QE++A N  SRSAKL
Sbjct: 240 SLEDRIVKNFFRDRSD----------------AFRILTKKPIIPSQEEIAMNPASRSAKL 283

Query: 312 RAGMRT 317
           RAG R 
Sbjct: 284 RAGERI 289


>gi|284008372|emb|CBA74773.1| S-adenosyl-methyltransferase [Arsenophonus nasoniae]
          Length = 393

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/318 (35%), Positives = 173/318 (54%), Gaps = 19/318 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  +   H+ VLL++ +  LN     + +D TFG GG+S+           +IA+DRDP 
Sbjct: 77  MADSRFKHISVLLDEAVNGLNIKANGIYVDGTFGRGGHSQLILSRLGSKGRLIAIDRDPH 136

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           AV+  +E +     +FS+   +FSQLQ ++  +     +DGV+ DLGVSS Q+D  +RGF
Sbjct: 137 AVAAAEEMI--TDNRFSIKHGSFSQLQTFIAQEGLVGKIDGVLLDLGVSSPQLDDPERGF 194

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182
           SF + GPLDMRM   +G SA+  + +A+  D+  +L   GEE+ A RIA AIV R     
Sbjct: 195 SFMRDGPLDMRMDPTTGQSAAQWLMKADEADIAWVLKTYGEERFAKRIAKAIVARNHHSA 254

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T     + +   V   K    HPATRSFQA+RI++N+E+EE+A+ L  +   L   
Sbjct: 255 EEPLTRTKQLAELIAQVSPFKEKHKHPATRSFQAIRIYINSELEEIAKALEGSLNILAPQ 314

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQ 297
           G L ++SFHSLEDRLVK+F    S        +  ++         + + + K  + PT+
Sbjct: 315 GRLSIISFHSLEDRLVKRFIREHSRGPKVPVGLPLTDVQLKAIGSPILKVLGK--MKPTE 372

Query: 298 EDVAFNRRSRSAKLRAGM 315
            ++  N R+RS+ +R   
Sbjct: 373 REIIENPRARSSVVRFAE 390


>gi|325280032|ref|YP_004252574.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter
           splanchnicus DSM 20712]
 gi|324311841|gb|ADY32394.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter
           splanchnicus DSM 20712]
          Length = 302

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 15/308 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HVPVLL++ +  L+   G V LD TFG GG+S    K       ++  D+D  A++
Sbjct: 1   MSEYHVPVLLKESVDGLDIRQGGVYLDLTFGGGGHSGEILKRLDAEGCLLGFDQDEDALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
              E      ++F      F  L++++   G    DG++ DLGVSS + D   RGFSF+ 
Sbjct: 61  NVPE-----DDRFIFVNHNFRYLRNFMRYYGYEEADGILADLGVSSHEFDEAGRGFSFRF 115

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM+     +A+ V+N  + + LT I    GE + A R+   IVK R +   +T+
Sbjct: 116 EAELDMRMNQRSKLTAATVLNTYDAEQLTAIFRNYGEVENARRLVDLIVKARANQEIKTS 175

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +    +I   +   K  +     + +QALRI VN E+E L + ++ A + LK GG L+++
Sbjct: 176 EAFYQIILPCIPKLKEKK--YLAKVYQALRIEVNGELEALEEMMQQAMEVLKPGGRLVII 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK F  + + +    + ++  + H   F+ + +KV+VP++E++  N R+RS
Sbjct: 234 TYHSLEDRIVKNFLKAGNAEGKLEKDLVFGHVHHN-FELVNRKVIVPSEEEIVRNPRARS 292

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 293 AKLRIARK 300


>gi|192361777|ref|YP_001983393.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107]
 gi|263445770|sp|B3PCM8|RSMH_CELJU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190687942|gb|ACE85620.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107]
          Length = 309

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 166/306 (54%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL + +  L   P    +D TFG GG+S    +       ++A+D+D  A++  +
Sbjct: 5   PHVTVLLGEAVEALVSNPEGTYIDGTFGRGGHSALILQHLASEGRLLAIDKDLAAIATAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F++   +F+ L++   ++     V G++ DLGVSS Q+D  +RGFSF + G
Sbjct: 65  EKFA-TDARFAIAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGFSFMQDG 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA++ VN A+  ++  +L   GEE+ A R+A AI+  RQ  PF  T  
Sbjct: 124 PLDMRMDQTRGPSAAEWVNTASEDEIAWVLREYGEERFAKRMARAIIAERQKRPFVRTGH 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+      +  + HPATR+FQA+RI VN E+E+L   L  A   L  GG L+V+SF
Sbjct: 184 LAEVIKAANPAWEKGK-HPATRAFQAIRIQVNRELEDLEAVLAQAVDVLAPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK+F   +       + +    A          K +  + ++V  N RSRSA 
Sbjct: 243 HSLEDRLVKRFIRQQEQGDPVPKGLPLREAQLNKTMRSLGKAMKASDQEVEANVRSRSAV 302

Query: 311 LRAGMR 316
           +R   +
Sbjct: 303 MRVAEK 308


>gi|332663143|ref|YP_004445931.1| ribosomal RNA small subunit methyltransferase H [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331957|gb|AEE49058.1| Ribosomal RNA small subunit methyltransferase H [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 298

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 163/306 (53%), Gaps = 13/306 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVL  + I  LN   G   +DATFG GG++R   +     + +I  D+D  A   
Sbjct: 1   MEYHNPVLASEAIEALNIQAGGTYVDATFGGGGHARLILQALDENARLIGFDQDEDAQRN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + D +  F      F +    + D   VDG++ DLGVSS Q++  +RGFSF+    
Sbjct: 61  A---LDDPRFTFVPHNFRFLRRFLRLHDAVEVDGILADLGVSSHQLNEAERGFSFRFDTQ 117

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  G  SA+DV+      +L  + G LGE + +  +A AIV+ RQ  P ++  DL
Sbjct: 118 LDMRMNQQGERSAADVLATYTEAELQNMFGTLGEVRNSRTLAQAIVRERQVRPMRSISDL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++   V   +N       + FQALR+ VN+E+  L   L  + + LK GG L+++++H
Sbjct: 178 LAVLDPLVRGQRNR---YLAQVFQALRMEVNDEVGALQDFLEQSLQVLKPGGRLVIIAYH 234

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK F  +        +    +   P  F+ IT+K ++P++ ++  N RSRSAK+
Sbjct: 235 SIEDRMVKNFIKTGKVDGEMEQDFYGNITRP--FEVITRKAMLPSEIEIKANPRSRSAKM 292

Query: 312 RAGMRT 317
           R  ++ 
Sbjct: 293 RVAVKI 298


>gi|32129733|sp|Q87AF2|RSMH_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263506475|sp|B2I9C0|RSMH_XYLF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 313

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 170/306 (55%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A++   
Sbjct: 2   THVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA- 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDM
Sbjct: 61  ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ L
Sbjct: 121 RMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAEL 180

Query: 195 IQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           I   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 181 IASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F +  S      R +        + + I +  +   ++++  N R+RSA 
Sbjct: 241 HSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAV 299

Query: 311 LRAGMR 316
           LR   +
Sbjct: 300 LRVAEK 305


>gi|290581041|ref|YP_003485433.1| hypothetical protein SmuNN2025_1515 [Streptococcus mutans NN2025]
 gi|254997940|dbj|BAH88541.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 316

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I +L+  P  + +DAT G  G+S           ++   D+D  A+   + 
Sbjct: 7   HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y    Q S  +  F  L+  + D     +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  + +DL R+    GE+K + +IA  I   R+    +TT +
Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+      +   + HPA + FQA+RI VN+E+    + L  A   L   G + V++
Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   +   +              F  + +K ++P   +++ N R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNVRELSENNRAHSA 306

Query: 310 KLRAGMRTVE 319
           KLR   +   
Sbjct: 307 KLRVIQKIRN 316


>gi|326406411|gb|ADZ63482.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           CV56]
          Length = 317

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYETLVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|283769659|ref|ZP_06342555.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219]
 gi|283103927|gb|EFC05313.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219]
          Length = 318

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H+ VLLE+ +  L   P  + +DAT G  G+S    K     ++ + D+D  A+   
Sbjct: 1   MSEHISVLLEESLEALKILPEGIYVDATLGRAGHSVEILKKLTTGHLYSFDKDQQAIEEC 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ Y E+ +L  A FS++ + +     + VDG++FDLGVSS Q D GDRGFS++   
Sbjct: 61  SLKLKSYAEKVTLIHADFSKMMEKLQSLGVEKVDGILFDLGVSSPQFDQGDRGFSYRFEA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S    A  VVN  + K+L  I     EE+ A  IA+ I + R+  P +TT +
Sbjct: 121 RLDMRMDQSQDLDAYQVVNHYSAKELKDIFLKYSEERYAPMIANKICEIRERKPIETTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L ++++  +   +   + HPA + FQA+R+ VN+E+  L Q L  A   LK GG L V+S
Sbjct: 181 LVNIVKSCLPAKELRKKKHPAKQVFQAIRMEVNDELGTLEQALNQACSLLKEGGRLAVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHS+EDR+VK               +     +   A F+ + KK ++  + ++  N R+ 
Sbjct: 241 FHSIEDRMVKTILKKHCEIEKPDPRLPIRFEDIQQADFRLVYKKPILAKEAELENNHRAH 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVIEK 309


>gi|310823496|ref|YP_003955854.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396568|gb|ADO74027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Stigmatella aurantiaca DW4/3-1]
          Length = 301

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 166/300 (55%), Gaps = 6/300 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + + LL P  GKVILD T G GG++ +    G+ VI +DRDP A++     + 
Sbjct: 5   HQTVLLAEAVQLLQPGVGKVILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLG 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +   F      F +L     D   VDGV+ DLGVSS Q+D  +RGFSF   GPLDMRM 
Sbjct: 65  GHA-HFQARAGNFGELPRVAADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMG 123

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G +A++++ Q + ++L RI+  LGEE  +  IA  + +     P +T +   ++ +  
Sbjct: 124 PEGRTAAELIAQEDERELARIIYELGEESFSRPIARELKRAL---PTRTLEAAEAVKRAV 180

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
              +   RIH AT++FQALR+ VN E+E L   L +  + LK GG   V++FHSLEDR V
Sbjct: 181 PRKAWPKRIHVATKTFQALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKV 240

Query: 259 KKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+ F +  G       +   +   P  F  +TKK V  ++++V  N RSRSA LRA  + 
Sbjct: 241 KEAFRNLVGACRCPPGLPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEKI 300


>gi|254479883|ref|ZP_05093131.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium
           HTCC2148]
 gi|214039445|gb|EEB80104.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium
           HTCC2148]
          Length = 308

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 164/310 (52%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLL + +  L  AP    +D TFG GG+SR          +++ +D+DP A  
Sbjct: 1   MANMHQTVLLREAVEALVTAPSGAYVDGTFGRGGHSRFLLDQLDDNGHLLGVDKDPVACE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           C  + +     +FS +  +F+ L      +     DG++ DLGVSS Q+D   RGFSF  
Sbjct: 61  CAAQ-LSSADSRFSFYHGSFADLPQQLQLMDIDAFDGILLDLGVSSPQLDEAGRGFSFMS 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  S G +A+  ++ A+   +  +L   GEE+ A RIA AIVK R+  P  TT
Sbjct: 120 DGPLDMRMDTSSGETAAQWLSYADTTAIAEVLKEYGEERFAKRIAAAIVKAREVEPLTTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++ +     + ++ HPATR+FQA+RI VN E+E+L   L S+   LK GG L+V+
Sbjct: 180 AQLAKVVSEANPRWERHK-HPATRAFQAIRIKVNRELEDLGDLLASSLDMLKVGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK++    +        +  ++A       +  K    +  +V  N RSRS
Sbjct: 239 SFHSLEDRMVKRYMRDMARGEQLPAGVPVTDAALNRRMKLVGKATKASDAEVDENVRSRS 298

Query: 309 AKLRAGMRTV 318
           A +R   +  
Sbjct: 299 AVMRVAEKIA 308


>gi|292489365|ref|YP_003532252.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292898411|ref|YP_003537780.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291198259|emb|CBJ45365.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554799|emb|CBA22629.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312173530|emb|CBX81784.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 312

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 120/317 (37%), Positives = 175/317 (55%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN  P  + +D TFG GG+SR           + A+DRDP   
Sbjct: 2   QDTYKHTTVLLDEAVNALNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQ-- 59

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
                       +F++    FS L +Y   +     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 60  -AIAAAADITDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ + +A   D+T +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDITFVLKTFGEERFARRIARAIVERNRQQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           ++SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|154706930|ref|YP_001425301.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii Dugway
           5J108-111]
 gi|263446157|sp|A9KET2|RSMH_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154356216|gb|ABS77678.1| S-adenosyl-methyltransferase [Coxiella burnetii Dugway 5J108-111]
          Length = 307

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 11/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVL ++V+  L   P  + +D TFG GG+S    +       ++A+D+DP AV+ 
Sbjct: 1   MEAHKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + + +   +FS+   TF+ LQ    D   +  V+G++ D+GVSS Q++   RGFSF K
Sbjct: 61  ANKALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   T
Sbjct: 120 DGPLDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           Q+LS ++ K  Y  +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+
Sbjct: 180 QELSDIVIKA-YPQRKIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK+F    S   +     I +       + +   ++ PT+ ++  N R+RS
Sbjct: 239 SFHSLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPL-GSLIRPTEAEIKKNPRARS 297

Query: 309 AKLRAGMR 316
           A+LR   +
Sbjct: 298 ARLRIVEK 305


>gi|329122136|ref|ZP_08250744.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister
           micraerophilus DSM 19965]
 gi|327466943|gb|EGF12459.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister
           micraerophilus DSM 19965]
          Length = 310

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               HV VL  ++I+ +      V  D T G  G+     +    G+ +I +D+D  A+ 
Sbjct: 1   MEFKHVTVLRREMISAILTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  M+D     +   + FS +++ + +     ++G +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  AAELRMKDCTCNLNFVHSNFSNIKNILSEKNLNQINGFIFDLGVSSYQLDEANRGFSYMH 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+ +   +A DVVN+ + + +  I+   GEE+ A RIA  IV  R++   +TT
Sbjct: 121 EGRLDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L S+I+  +   ++ N  HPA R+FQA+RI VNNE+  +   +      L +GG + +
Sbjct: 181 GELVSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK+ F + + + +           H    + +    + PT E++A N R+
Sbjct: 241 ITFHSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRA 299

Query: 307 RSAKLRAGMRT 317
           RSA LR   + 
Sbjct: 300 RSAILRVAEKI 310


>gi|226941977|ref|YP_002797051.1| S-adenosyl-methyltransferase MraW [Laribacter hongkongensis HLHK9]
 gi|263456276|sp|C1D5M5|RSMH_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226716904|gb|ACO76042.1| MraW [Laribacter hongkongensis HLHK9]
          Length = 317

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 7/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L   P  V +D TFG GG+SR           ++A D+DP A++   E
Sbjct: 7   HVTVLLQEAVEALAIRPDGVYVDCTFGRGGHSRLVLSRLGPAGRLVAFDKDPQAIAVATE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A   +  D +    VDGV+ DLGVSS QID   RGFSF+   PLDMR
Sbjct: 67  LDDPRLTIVHEGFAGLDRELDRLGIDKVDGVLMDLGVSSPQIDDASRGFSFRFDAPLDMR 126

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G +A+D + +A+  ++  ++   GEE+ A+ IA AIV  R    F TT    + +
Sbjct: 127 MDTTRGETAADWLARADEAEIRTVIRDYGEERFAASIARAIVANRLEGQFLTTTGELAAL 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 ++     PATR+FQA+RIF+N E++EL   L  A + L+ GG L+V++FHSLED
Sbjct: 187 CARCVRTREKGQDPATRTFQAIRIFINRELDELQAVLPQAVRRLRPGGRLVVIAFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK F    S      R +    ++      + +  K V    E +A N R+RSA +R 
Sbjct: 247 RIVKLFLRDASSPPELPRGLPVRAADLPEPPLRLV-GKPVREGDEQLARNPRARSAIMRV 305

Query: 314 GMRTV 318
             R+ 
Sbjct: 306 AERSA 310


>gi|125624479|ref|YP_001032962.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|263458159|sp|A2RLT4|RSMH_LACLM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460329|sp|Q02ZY9|RSMH_LACLS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|124493287|emb|CAL98255.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 317

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A +  + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKV 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S   SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQSQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKSIFKEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|330957978|gb|EGH58238.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 313

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/318 (35%), Positives = 172/318 (54%), Gaps = 17/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+SA       H+ VLLE+ +  L        LD TFG GG+SR           ++  D
Sbjct: 1   MNSAFT-----HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           +DP A++ GQ  +     +F + Q +F++L   V ++     V G++ DLGVSS Q+D  
Sbjct: 56  KDPQAIATGQA-LAAEDGRFVIVQRSFAELGSEVQERGLAGKVSGILLDLGVSSPQLDDP 114

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF   GPLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR
Sbjct: 115 ERGFSFMNDGPLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRR 174

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +  PF+ T DL+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A   L+
Sbjct: 175 EIQPFERTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDTLE 233

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK F    +        R +            I  K    +  
Sbjct: 234 IGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRDLPIQFKPFEPKIKIHGKAQFASDA 293

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N RSRSA +R   +
Sbjct: 294 ETKANPRSRSAVMRVAEK 311


>gi|294012787|ref|YP_003546247.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S]
 gi|292676117|dbj|BAI97635.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S]
          Length = 326

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 134/319 (42%), Positives = 195/319 (61%), Gaps = 13/319 (4%)

Query: 9   MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
           MS++  H      H+PVL+++V+  L   PG+V +D TFGAGGYS +    G+ V A DR
Sbjct: 1   MSASPDHAQSPERHIPVLIDEVLDALAINPGEVHVDGTFGAGGYSGAMADRGARVFAFDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           DP A+  GQ    +     +L    FS++++ + ++    V GV  D+GVSSMQ+D  +R
Sbjct: 61  DPDAIREGQALAEEKG--VTLIAGEFSRMEELLAERGVTSVSGVTLDIGVSSMQLDRPER 118

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSFQ  GPLDM MS SG+SA+D +N A  +++  IL   GEE ++ R+A AIV+ R   
Sbjct: 119 GFSFQGDGPLDMTMSRSGMSAADFLNNAPEQEIADILYRYGEEPRSRRVAKAIVEAR--- 175

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P + T  L+++++K +    +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG
Sbjct: 176 PLERTGQLANVVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVA 301
            L VV+FHSLEDR+VK+F  +RSG   +    +P         F+    K V P   ++A
Sbjct: 236 RLAVVTFHSLEDRIVKQFLRNRSGSEASGSRHLPQRQSGPAPTFERPA-KAVRPGMVELA 294

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSA LR+ +RT   
Sbjct: 295 RNPRSRSATLRSAVRTSAP 313


>gi|186685061|ref|YP_001868257.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102]
 gi|262824674|sp|B2J183|RSMH_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|186467513|gb|ACC83314.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102]
          Length = 298

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 160/300 (53%), Gaps = 24/300 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+ VL  +VI  L   PG   LD T G GG+SR   +  +   V A+D+D  A+    + 
Sbjct: 18  HISVLGREVIEGLAVRPGGHYLDVTVGGGGHSRLILEAAADVRVTAVDQDEDALVAANKN 77

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + +Y ++     + F+  +   P    DG++ DLGVSS  +D  +RGFSF+++  LDMRM
Sbjct: 78  LAEYSDRIQFIYSNFADYE--FPPNTFDGILADLGVSSYHLDQAERGFSFRQAANLDMRM 135

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                ++A+DV+N  +  +L  I    GEE+ + RIA  IV+RR      TT+   ++  
Sbjct: 136 DRGRSLTAADVINNWDEAELADIFFKYGEERLSRRIARRIVERRPLH--TTTELADAIAS 193

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                 +  RIHPATR FQALRI VN+E++ L   L  A  AL  GG + ++SFHSLEDR
Sbjct: 194 SVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFLDKAPNALVPGGRIAIISFHSLEDR 253

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VK    +                   + + +TKK ++  +E+++ N RSRSAKLR   +
Sbjct: 254 PVKHGLRNS-----------------PLLKVLTKKPIIAQEEEISNNPRSRSAKLRIAEK 296


>gi|237709504|ref|ZP_04539985.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA]
 gi|229456560|gb|EEO62281.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA]
          Length = 304

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 162/303 (53%), Gaps = 12/303 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A     
Sbjct: 8   YHIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65

Query: 76  ETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             + D +  F      + S    Y   + VD ++ DLGVSS   D  +RGFSF+  G LD
Sbjct: 66  -IVSDSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+   G++A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D   
Sbjct: 125 MRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIITIGDFLE 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HSL
Sbjct: 185 VIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR 
Sbjct: 243 EDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLRI 300

Query: 314 GMR 316
             +
Sbjct: 301 AEK 303


>gi|91786965|ref|YP_547917.1| S-adenosyl-methyltransferase MraW [Polaromonas sp. JS666]
 gi|123060224|sp|Q12EM3|RSMH_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91696190|gb|ABE43019.1| methyltransferase [Polaromonas sp. JS666]
          Length = 305

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 167/307 (54%), Gaps = 11/307 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL + IA L+  P    +DATFG GG+SR           + A D+D  A+
Sbjct: 2   QDTWTHRTVLLNEAIAALHINPDGHYIDATFGRGGHSRLLLSQLSPQGRLTAFDKDLDAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  Q        +FS+    F  L    P     GV+ DLGVSS QID   RGFSF+  G
Sbjct: 62  AEAQTI---TDPRFSIRHEGFMHLGQL-PAASAAGVLMDLGVSSPQIDNPVRGFSFRSEG 117

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G S ++ +  A+++ +  ++   GEE+ A ++A AI +RRQ      T  
Sbjct: 118 PLDMRMDTTRGQSVAEWLADASIETMAEVIREYGEERFAQQVAKAIDRRRQERGPLRTTA 177

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             + +      ++     PATR+FQALRIF+N E+EEL Q L ++ K L+ GG L+V+SF
Sbjct: 178 ELAEVVAGAVKTREPGKDPATRTFQALRIFINAELEELQQALEASLKVLQPGGRLVVISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A +S +V   R    +       +++ +  + P++E++A N RSRSA 
Sbjct: 238 HSLEDRIVKQFIAGQSREV-FDRRAPFAAPKAMRLKALGR--IKPSEEEIAANPRSRSAV 294

Query: 311 LRAGMRT 317
           +R   RT
Sbjct: 295 MRVAERT 301


>gi|15672847|ref|NP_267021.1| hypothetical protein L87561 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|20139138|sp|Q9CH73|RSMH_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12723794|gb|AAK04963.1|AE006321_1 hypothetical protein L87561 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 317

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|188584364|ref|YP_001927809.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001]
 gi|263456461|sp|B1Z8U3|RSMH_METPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|179347862|gb|ACB83274.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001]
          Length = 351

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 183/309 (59%), Gaps = 12/309 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
            + +D TFGAGGY+R+  + G    VIA+DRDP A+  G + +     +  L Q  F  L
Sbjct: 38  GLAVDGTFGAGGYTRALLESGPDMRVIAIDRDPTAIRAGADLVEGAGGRLRLVQGRFGDL 97

Query: 96  QDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
                   +   D VV D+GVSSMQ+D   RGFSF++ GPLDMRM   G SA+D+VN   
Sbjct: 98  DTLLADQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPSAADLVNGEE 157

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
              L  IL   GEE+++  +A AIV+ R+ AP  TT  L+ LI   V     + IHPATR
Sbjct: 158 ESTLADILYHFGEERRSRAVARAIVEARRRAPIATTAQLADLIAGVVRPEPGSPIHPATR 217

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           SFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLEDR+VK+FF++RSG+    
Sbjct: 218 SFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLEDRIVKQFFSARSGRAAQA 277

Query: 273 RHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL 330
              +P    PA   F+ +TK  V+P++ +   N R+RSAKLRAG RT   +        L
Sbjct: 278 SRHLPGVERPAPKSFRLVTKGPVLPSEAETEVNPRARSAKLRAGERTDGPAPPP-----L 332

Query: 331 PRLPTLSQF 339
             + TL+  
Sbjct: 333 SAIETLASL 341


>gi|212692815|ref|ZP_03300943.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855]
 gi|212664604|gb|EEB25176.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855]
          Length = 304

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 162/303 (53%), Gaps = 12/303 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A     
Sbjct: 8   YHIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65

Query: 76  ETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             + D +  F      + S    Y   + VD ++ DLGVSS   D  +RGFSF+  G LD
Sbjct: 66  -IVSDSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+   G++A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D   
Sbjct: 125 MRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSHKLASTIVKARGVKQIITIGDFLE 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HSL
Sbjct: 185 VIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAAAKALKPGGRLVVITYHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR 
Sbjct: 243 EDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLRI 300

Query: 314 GMR 316
             +
Sbjct: 301 AEK 303


>gi|270157407|ref|ZP_06186064.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968]
 gi|289164199|ref|YP_003454337.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Legionella longbeachae NSW150]
 gi|269989432|gb|EEZ95686.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968]
 gi|288857372|emb|CBJ11200.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Legionella longbeachae NSW150]
          Length = 308

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+S+   +       + A+D+D  A+  
Sbjct: 1   MATHQSVLLHESITGLAIKSDGIYFDGTFGRGGHSKEILRFLNEEGRLYAIDKDLDAIMY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E   D  ++F +FQ ++++++ +  +      VDG++ DLGVSS Q+D  +RGFSF +
Sbjct: 61  AKEHF-DQDKRFHIFQGSYAKIEQFATEAGVLGMVDGILLDLGVSSPQLDNPERGFSFMQ 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     +SA+  VN+A   ++T +  + GEE+ A RIA AIV  R  AP  TT
Sbjct: 120 QGPLDMRMDRSQPMSAARFVNEAETDEMTSVFKLYGEERFAGRIAKAIVTARNIAPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++++     + ++ HPATR FQA+RI+VN E+ +L + L      L   G L+V+
Sbjct: 180 LQLAEIVKEANPKWEKHK-HPATRVFQAIRIYVNQELNDLERCLEQCIHVLAPKGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  ++           I        F+ I  K ++P Q +++ N R+R
Sbjct: 239 SFHSLEDRIVKQFMKNKEEGAKPPPEVPIRYKELKTNFKRI-GKAIMPQQNEISENVRAR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|170738613|ref|YP_001767268.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46]
 gi|263456469|sp|B0UFI0|RSMH_METS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168192887|gb|ACA14834.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46]
          Length = 337

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 143/309 (46%), Positives = 194/309 (62%), Gaps = 8/309 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
             H+PVLL +V  +L    G  V++D TFGAGGYSR+         VIA+DRDP AV+ G
Sbjct: 4   APHIPVLLAEVRGVLRLGEGPGVVVDGTFGAGGYSRALLAADPDLRVIAIDRDPTAVAAG 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           QE       +  L Q  F  L   V  +    VDGVV D+GVSSMQ+D  +RGFSF+  G
Sbjct: 64  QELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSMQLDRAERGFSFRADG 123

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM  +G SA+D+VN A   +L  I+   GEE+++  +A AI++ R+ AP  TT  L
Sbjct: 124 PLDMRMEGAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARAILEARRRAPIATTGAL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V     + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FH
Sbjct: 184 AEIVAGVVRAEPGSGIHPATRTFQALRIAVNDELGELNRALHAAERILRPGGRLAVVTFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+FF++RSG+ ++    +P      P  F  +TK  V P++ + A N R+RSA
Sbjct: 244 SLEDRIVKQFFSARSGRAVSASRHLPMAERPVPRSFTLVTKGPVGPSEAEAAANPRARSA 303

Query: 310 KLRAGMRTV 318
           KLRAG RT 
Sbjct: 304 KLRAGERTD 312


>gi|303228441|ref|ZP_07315274.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230798|ref|ZP_07317545.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514558|gb|EFL56553.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516943|gb|EFL58852.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 310

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 155/309 (50%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
              +HV VLL + +  +   P  + +D T G  G++ +          +I LD+D  A++
Sbjct: 1   MEFNHVSVLLNETVDSVVTNPDGIYVDCTLGGAGHAHAVGERLSSQGMIIGLDQDEDALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D   Q       FS L+   +      VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  VARQRLSDLTCQVMTIPTNFSDLKHALEEQGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A  VVN+     L +I+   GEE+ A RI   IV  R      TT
Sbjct: 121 DGPLDMRMDKEAPITAEIVVNEYESDKLLQIIRDYGEERWAKRIVEFIVAARNEKRITTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L S+I+K +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 181 GELVSIIKKAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGRIGV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     H         K + P+  +V  N RSR
Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPELPVCVCHHKAVLKAKNKAIEPSAGEVEMNPRSR 300

Query: 308 SAKLRAGMR 316
           SAKLR G++
Sbjct: 301 SAKLRVGIK 309


>gi|302344989|ref|YP_003813342.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC
           25845]
 gi|302149179|gb|ADK95441.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC
           25845]
          Length = 314

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 13/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      H+PVLL + I  LN     V +D TFG GG+SR         S++ + D+D  
Sbjct: 2   IKTAECYHIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEDSHLYSFDQDAD 61

Query: 70  AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRG 124
           A           +  ++F+  ++ F  L++++    V  +   + DLGVSS   D   RG
Sbjct: 62  AEQNIDNMGLSDEQVDRFTFVRSNFRYLKNWMRYYDVGYIDGLLADLGVSSHHFDDETRG 121

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+   GI+A+D++N  + + L  IL + GE KQ+ RIA AIVK R   
Sbjct: 122 FSFRFEAPLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQK 181

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            ++TT DL + I+   +F +        + FQALRI VN+E++ L + L +A + L+ GG
Sbjct: 182 TYKTTNDLLTTIEP--FFQRAREKKDMAKMFQALRIEVNHEMDALKEMLMAATELLRPGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK    S + +    +        P  F+ +  KV+  + ++   N
Sbjct: 240 RLSVITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITASNDEQERN 297

Query: 304 RRSRSAKLRAGMRTVER 320
            RSRSAKLR   +    
Sbjct: 298 PRSRSAKLRIAEKKANE 314


>gi|325264796|ref|ZP_08131525.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
 gi|324030088|gb|EGB91374.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
          Length = 315

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 169/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + +DAT G GG++   C       + I +D+D  A+     
Sbjct: 9   HTSVLLEETVDGLAVKPDGIYVDATLGGGGHAFEVCSKLSSKGSFIGIDQDAAAIEAASA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+ E+ ++ ++ +  ++  + +     VDG+V DLGVSS Q+D  +RGFS++   PL
Sbjct: 69  RLLDFGERVTIIRSNYCDMKPRLHEIGIDKVDGIVLDLGVSSYQLDTAERGFSYRTDAPL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN  +  DL R++   GE++ A  IA  IV  R   P +TT  L+
Sbjct: 129 DMRMDQRQMMTAKDIVNDYSESDLYRVIRDYGEDRFAKNIAKHIVIARGKGPIETTGQLN 188

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    +    HP+ R++QA+RI +N E++ L + L    + LK GG + +++FH
Sbjct: 189 EIIRKAIPMKIQKTSGHPSKRTYQAIRIELNRELDVLRETLDDMIELLKPGGRICIITFH 248

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F           H       + +  + IT+K ++P++E++  N RS+SAK
Sbjct: 249 SLEDRIVKSAFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEENSRSKSAK 308

Query: 311 LRAGMR 316
           LR   R
Sbjct: 309 LRIFER 314


>gi|300726283|ref|ZP_07059736.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14]
 gi|299776480|gb|EFI73037.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14]
          Length = 318

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 110/320 (34%), Positives = 169/320 (52%), Gaps = 20/320 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      HVPVLLE+ +  LN  PG + +D TFG GG+S          +++ + D+D  
Sbjct: 2   IKTAETYHVPVLLEQTVNGLNIQPGGIYIDVTFGGGGHSSKILSCLDSQAHLYSFDQDAD 61

Query: 70  A---VSCG------QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQ 117
           A   +         ++       +F+  ++ F  +++++    VD +   + DLGVSS  
Sbjct: 62  AENNIYYAEAGSNEKDHRFIDDPRFTFVRSNFRYIKNWMRYYHVDYIDGLLADLGVSSHH 121

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  DRGFSF+   PLDMRM+    ++A+D+VN      L  I  + GE K + +IA+A+
Sbjct: 122 FDDKDRGFSFRFDSPLDMRMNKRADMTAADIVNNYPESQLADIFYLYGELKNSRKIANAL 181

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           V+ RQ+    TTQD     +    F +        R FQALRI VN+E++ L + L SA 
Sbjct: 182 VRYRQNQKILTTQDFIKATEP--LFKREKEKKDMARLFQALRIEVNHEMDALKEMLNSAT 239

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L+ GG L V+++HSLEDR+VK    S + +   V+     +  P  ++ I  KV++P 
Sbjct: 240 ELLRPGGRLSVITYHSLEDRIVKNVMKSGNPEGKIVKDFFGKSETP--YKLINNKVIIPD 297

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           QE+   N RSRSAKLR   +
Sbjct: 298 QEEQENNPRSRSAKLRIAEK 317


>gi|239907971|ref|YP_002954712.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1]
 gi|263446299|sp|C4XK86|RSMH_DESMR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239797837|dbj|BAH76826.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1]
          Length = 324

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 169/308 (54%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL +VI LL   PG  ILDAT G GG+SR   +       V+ LDRD  A+S    
Sbjct: 7   HKPVLLREVIELLGIRPGMKILDATVGLGGHSRGMLEAAGGEGQVLGLDRDREALSEAGR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +   S+    + +   + VD  + D G+SS+Q+D  +RGF F   GPL
Sbjct: 67  WLAPYGDRVRLVRTRSSRFPAVLAEAGWEKVDAALLDAGMSSLQLDDPERGFGFLHDGPL 126

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM     G +A  +VN A+   L  I+   GE+ QA RIA AIV  R+     TT  L
Sbjct: 127 DMRMGAEDGGETAEGLVNLASYARLCEIIREYGEDPQAGRIARAIVSVREKEAITTTARL 186

Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++ +          R HPATR+FQALR+ VN E+ EL   L++    L  GG + V+S
Sbjct: 187 AEVVWQAYPAKWRATARQHPATRTFQALRMAVNEELAELEAFLKAIPDHLAPGGRVAVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK+ F + +   +  R  ++    H A  + +TKK V+  +E+V  N R+RS
Sbjct: 247 FHSLEDRLVKRAFRAEATDCICPREQVVCVCGHRARLRILTKKPVMAGEEEVRDNSRARS 306

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 307 AKLRVAER 314


>gi|281491359|ref|YP_003353339.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375100|gb|ADA64618.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           KF147]
          Length = 317

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTDGHLYSFDQDETAHENAKV 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA +VVN+   + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQNQTLSAYEVVNEYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|237724902|ref|ZP_04555383.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D4]
 gi|265754710|ref|ZP_06089762.1| methylase MraW [Bacteroides sp. 3_1_33FAA]
 gi|229436640|gb|EEO46717.1| S-adenosyl-methyltransferase MraW [Bacteroides dorei 5_1_36/D4]
 gi|263234824|gb|EEZ20392.1| methylase MraW [Bacteroides sp. 3_1_33FAA]
          Length = 304

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 12/303 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVPVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A     
Sbjct: 8   YHVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65

Query: 76  ETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             + D +  F      + S    Y   + VD ++ DLGVSS   D  +RGFSF+  G LD
Sbjct: 66  -IVSDSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+   GI+A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D   
Sbjct: 125 MRMNKRAGITAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIVTIGDFLE 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HSL
Sbjct: 185 VIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR 
Sbjct: 243 EDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLRI 300

Query: 314 GMR 316
             +
Sbjct: 301 AEK 303


>gi|294635001|ref|ZP_06713518.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685]
 gi|291091600|gb|EFE24161.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685]
          Length = 314

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 170/317 (53%), Gaps = 18/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
                H  VLL++ +A LN     + +D TFG GG+SR           +IA+DRDP   
Sbjct: 2   SENFQHKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDP--- 58

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
                  +    +FS+    FS L +YV +      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 59  QAIAAAAQINDARFSIVHGPFSALAEYVEELGLVGRIDGILLDLGVSSPQLDDPERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA+D + QA  +D+  +L   GEE+ A RIA AIV+R ++    
Sbjct: 119 MRDGPLDMRMDPSRGLSAADWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEAPL 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T     + +       K    HPATRSFQA+RI++N+E++E+ + L  A   L   G L 
Sbjct: 179 TRTRELAALISEASPFKEKHKHPATRSFQAIRIYINSELDEIERALEGALAVLAPAGRLS 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDRLVK+F    S      + +  + A          +++ K+  +P +++VA
Sbjct: 239 VISFHSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEQEVA 296

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   R  
Sbjct: 297 NNPRARSSVLRVAERIA 313


>gi|94994874|ref|YP_602972.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10750]
 gi|94548382|gb|ABF38428.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes
           MGAS10750]
          Length = 337

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 15/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +       +DG+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K ++P+  ++  N+R+ SAKLR   + 
Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKI 335


>gi|258593046|emb|CBE69357.1| S-adenosyl-dependent methyl transferase [NC10 bacterium 'Dutch
           sediment']
          Length = 301

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 172/308 (55%), Gaps = 21/308 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74
           G H+PVLLE+ +A L P PG   LDAT G GG++ +          +  +DRD  A++  
Sbjct: 5   GRHLPVLLEETVAFLQPRPGGCYLDATVGLGGHAETLLIESAPTGCLCGIDRDVEALALA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  +  L    F+ L     +      DG++FDLG SS Q+D   RGFSF + G
Sbjct: 65  KGRLGQFGSRVELRYGDFASLGAIAAENEWRPFDGILFDLGFSSFQMDNASRGFSFMRDG 124

Query: 132 PLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            LDMRM   G   SA++++ +   ++L R+L   GEE+ A RIA  IV+ R++ P  +T 
Sbjct: 125 LLDMRMDRQGCDKSAAELLARIPERELARLLQDYGEERWAKRIAARIVEARRTQPLTSTA 184

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ L+   V       RIH ATR+FQALRI VN+E+  L +GL++A + L  GG + V+
Sbjct: 185 QLARLVAAAVPRRAWPRRIHVATRTFQALRIAVNDELARLRRGLQNAVELLAVGGRICVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+ F   +               P   + +TK+ VVPT+ +   N R+RS
Sbjct: 245 SFHSLEDRIVKEVFRGWARS------------EPPRVRLLTKRPVVPTERESEINPRARS 292

Query: 309 AKLRAGMR 316
           AKLRA  R
Sbjct: 293 AKLRAAER 300


>gi|71275129|ref|ZP_00651416.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71900702|ref|ZP_00682825.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|170731118|ref|YP_001776551.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M12]
 gi|71163938|gb|EAO13653.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71729523|gb|EAO31631.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|167965911|gb|ACA12921.1| S-adenosyl-methyltransferase [Xylella fastidiosa M12]
          Length = 340

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 25  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E +     +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 85  AMA-ERVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203

Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 204 LAELIASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F +  +      R +        + + I +  +   ++++  N R+
Sbjct: 264 VISFHSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 323 RSAVLRVAEK 332


>gi|29653474|ref|NP_819166.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493]
 gi|153207124|ref|ZP_01945903.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161830127|ref|YP_001596084.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331]
 gi|165918373|ref|ZP_02218459.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334]
 gi|212219401|ref|YP_002306188.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuK_Q154]
 gi|42559465|sp|Q83F35|RSMH_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446160|sp|A9NA25|RSMH_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447414|sp|B6J5L7|RSMH_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29540736|gb|AAO89680.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493]
 gi|120576785|gb|EAX33409.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161761994|gb|ABX77636.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331]
 gi|165917879|gb|EDR36483.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334]
 gi|212013663|gb|ACJ21043.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 307

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 11/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVL ++V+  L   P  + +D TFG GG+S    +       ++A+D+DP AV+ 
Sbjct: 1   MEAHKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + + +   +FS+   TF+ LQ    D   +  V+G++ D+GVSS Q++   RGFSF K
Sbjct: 61  ANKALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   T
Sbjct: 120 DGPLDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           Q+LS ++ K  Y  +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+
Sbjct: 180 QELSDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK+F    S   +     I +       + +   ++ PT+ ++  N R+RS
Sbjct: 239 SFHSLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPL-GSLIRPTEAEIKKNPRARS 297

Query: 309 AKLRAGMR 316
           A+LR   +
Sbjct: 298 ARLRIVEK 305


>gi|86132600|ref|ZP_01051193.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134]
 gi|85816842|gb|EAQ38027.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134]
          Length = 298

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 163/306 (53%), Gaps = 13/306 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVLL++ +  L+  P  V +D TFG GG+SR           +   D+DP A   
Sbjct: 1   MDYHNPVLLKETVDGLDIKPDGVYVDVTFGGGGHSREILSRLGENGKLYGFDQDPDA--- 57

Query: 74  GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            Q    D +         F  +   +   K VDG++ D GVSS Q D  +RGFS +    
Sbjct: 58  AQNVPDDSRFVLIPENFRFIKRFLRFHGHKKVDGILGDFGVSSHQFDVAERGFSTRFESD 117

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    +DL ++    GE + A ++A AIV  R +AP +T++ L
Sbjct: 118 LDMRMNQKDDLSAYNVVNDYAEEDLRQVFWQYGELRNAPKLASAIVVARGNAPIKTSEQL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++   +   + ++I    + +QA+RI VN EIE L + L   E+ L+ GG + ++S+H
Sbjct: 178 KKVLAAFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEQLLEPGGRISLISYH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK++  +   +    + M  +   P  F+ + + ++VP++E++  N R+RSAKL
Sbjct: 236 SLEDRLVKRYIRNGLFEGEPEKDMYGNFEVP--FKKVGR-LIVPSKEEIKSNNRARSAKL 292

Query: 312 RAGMRT 317
           R   + 
Sbjct: 293 RIAAKV 298


>gi|313665282|ref|YP_004047153.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50]
 gi|312950000|gb|ADR24596.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50]
          Length = 309

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 155/310 (50%), Gaps = 12/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H+PVLL++ I  LN  P  + +D T G  G++    +  S    + A+D+D  A+  
Sbjct: 1   MDKHIPVLLDESIKYLNIKPNGIYVDCTLGRAGHASEILQRLSQNGFLYAIDQDKVAIDQ 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +      F L Q  FS L           VDG+++DLGVSS Q+D G RGFS++  
Sbjct: 61  AKEKLEKISNNFFLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQLDIGSRGFSYKID 120

Query: 131 GPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           GPLDMRM  +  S     +VNQ     +  IL   GEE  A  IA  IV         T 
Sbjct: 121 GPLDMRMDITNNSLTADIIVNQYPETQIADILFKYGEESFAKNIAKKIV--LSRPINSTL 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +  +           + HPA ++FQALRIF+NNE+  L   L+ A + L + G + V+
Sbjct: 179 KLVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALELLNSKGRICVI 238

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLE+++VK  F + +   +     ++       + F+ + KK + P+  ++  N RS
Sbjct: 239 TFHSLEEKIVKNIFNNSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNYRS 298

Query: 307 RSAKLRAGMR 316
            SAKL    +
Sbjct: 299 HSAKLWVIEK 308


>gi|15675533|ref|NP_269707.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes M1 GAS]
 gi|19746583|ref|NP_607719.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS8232]
 gi|21910939|ref|NP_665207.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315]
 gi|28895371|ref|NP_801721.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes SSI-1]
 gi|71904072|ref|YP_280875.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS6180]
 gi|71911181|ref|YP_282731.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS5005]
 gi|94988995|ref|YP_597096.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS9429]
 gi|94990995|ref|YP_599095.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10270]
 gi|94992888|ref|YP_600987.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS2096]
 gi|306826911|ref|ZP_07460211.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC
           10782]
 gi|13622733|gb|AAK34428.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|19748798|gb|AAL98218.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|21905146|gb|AAM80010.1| putative S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS315]
 gi|28810617|dbj|BAC63554.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71803167|gb|AAX72520.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71853963|gb|AAZ51986.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94542503|gb|ABF32552.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94544503|gb|ABF34551.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes
           MGAS10270]
 gi|94546396|gb|ABF36443.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS2096]
 gi|304430929|gb|EFM33938.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC
           10782]
          Length = 337

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 15/327 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68

Query: 60  --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +       +DG+++DLG
Sbjct: 69  EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K ++P+  ++  N+R+ SAKLR   + 
Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKI 335


>gi|313893629|ref|ZP_07827197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441773|gb|EFR60197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 310

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72
              +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S
Sbjct: 1   MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGKMLDPEGMIIGLDQDEDALS 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D   Q       FS L++ + +     VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  VARQRLSDLNCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV  RQ     TT
Sbjct: 121 DGPLDMRMDKDAPLTAEEIVNEYDAEQLLQIIRDYGEERWAKRIVEFIVNARQENRITTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 181 GELVRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     +         K + P+  ++  N R+R
Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPELPMCACNHKAVVKAKNKAIEPSAGEIEVNPRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 301 SAKLRVAIK 309


>gi|326334986|ref|ZP_08201186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692791|gb|EGD34730.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 314

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 160/312 (51%), Gaps = 17/312 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71
                H+PVLL + I  L   P    +DATFG GG+SR+          +IA D+DP A 
Sbjct: 2   QDNSYHIPVLLSQTIEGLALNPEGTYVDATFGGGGHSRAILAQLSHNGRLIAFDQDPQAQ 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E      E+F L    F  ++ ++       V+GV+ D GVSS Q D   RGFS +
Sbjct: 62  GNIIE-----DERFMLIPQNFRYIKRFLRFYGVRQVEGVLADFGVSSYQFDTAQRGFSTR 116

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+     SA +VVN     +L+ +L   GE + A +IA  ++ +RQ +P +T
Sbjct: 117 FEAPLDMRMNQEQPLSAFEVVNTYTESELSELLYRYGELRNAKQIARTLIAQRQISPIRT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL + +Q  +   K N+       +QA+RI VN E+  L + L    + +K GG + +
Sbjct: 177 TMDLRNAVQAFLPKGKENK--VLAPLYQAIRIEVNQELAALEEFLLQLPEVVKQGGRIAL 234

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDRLVK+F           +    +   P  F  I  K +VP+ E++A N R+R
Sbjct: 235 ISYHSLEDRLVKRFIRDGQCSGEPQKDFYGNTFPP--FVKI-GKPIVPSPEEIALNNRAR 291

Query: 308 SAKLRAGMRTVE 319
           SAKLR   RT  
Sbjct: 292 SAKLRIAERTEN 303


>gi|139437204|ref|ZP_01771364.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC
           25986]
 gi|133776851|gb|EBA40671.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC
           25986]
          Length = 321

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 167/320 (52%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           M   I      H PV+L +V+  L    G V+ D T G  G+S            ++ +D
Sbjct: 1   MERGILTQEYRHEPVMLGEVLESLRLKSGSVVCDCTLGGAGHSVKMAAQVGETGLLLGVD 60

Query: 66  RDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +D  A+      +          L +  F  L + +      GVDG +FDLGVSS Q+D 
Sbjct: 61  QDDMALEAAGARLDREVPGVPHQLLKGNFGDLDELLCSAEVPGVDGFLFDLGVSSPQLDI 120

Query: 121 GDRGFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             RGFS+ +  PLDMRM     +   ++V+N  N  DL RIL + GEEK AS+IA  IV+
Sbjct: 121 PGRGFSYNEDAPLDMRMDPGNNTLNAAEVINTYNEHDLARILRVYGEEKFASQIAREIVR 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           RR+  P +TT     +I+  +  + + +  HPA +SFQA+RI VN+E++ L +GL +A +
Sbjct: 181 RREQEPIETTGQFVEIIKAGIPAAARRHGGHPAKKSFQAIRIEVNHELDVLERGLDAATR 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296
            L  GG + V+S+HSLEDR+VK  F   S        +      +  + + IT+K +V  
Sbjct: 241 WLNPGGRICVISYHSLEDRIVKNHFKEMSQGCTCPPEIPVCVCGNVPILKVITRKPLVAQ 300

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            ++V  N R+RSAK+R   R
Sbjct: 301 PDEVERNPRARSAKIRVAQR 320


>gi|219849709|ref|YP_002464142.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485]
 gi|263445784|sp|B8G5X3|RSMH_CHLAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219543968|gb|ACL25706.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485]
          Length = 301

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 176/310 (56%), Gaps = 22/310 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
              HVPV++ +V+A L P PG   +DAT G GG++ +  +    G  ++ +D DP A+  
Sbjct: 4   TFQHVPVMVAEVVAALAPRPGGRYIDATVGGGGHALAVLQAARPGGRLLGIDADPAALVA 63

Query: 74  GQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128
             + + +    E   L   +F+ L     + G      ++FDLGVSS Q+D  +RGFSF 
Sbjct: 64  TADRLAEAGLREHAVLCHGSFADLAVIAGETGFINVDGILFDLGVSSYQLDTPERGFSFA 123

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMR+    G +A+D+VN  + ++L  ++   GEE  A RIA AIV+RR++ PFQ 
Sbjct: 124 ADGPLDMRLDPTQGPTAADLVNTLSERELADVIFQYGEEHAARRIARAIVERRRTQPFQR 183

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL+++I + V   +  RIHPATR+FQALRI VN E++ LA  L  A   L  GG L+V
Sbjct: 184 TADLAAVIARVV-GGRRGRIHPATRTFQALRIAVNRELDRLAAALPQAVHLLAPGGRLVV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F  + +                      TKK V  T ++VA N R+R
Sbjct: 243 ISFHSLEDRIVKQFMRAEAEGAT------------PRLVINTKKPVAATDDEVATNPRAR 290

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 291 SAKLRVATRI 300


>gi|237747024|ref|ZP_04577504.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS]
 gi|229378375|gb|EEO28466.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL + +  L+        V LD TFG GG+SR   +       ++A D+DP AV  
Sbjct: 8   HDSVLLNEAVDALDISGKRADGVYLDGTFGRGGHSRLILERLGEKGRLVAFDKDPEAVRV 67

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E       +F +   TF+ L++ + ++ +   DG++ DLGVSS Q++   RGFSF+  
Sbjct: 68  AKEI---GDPRFEIVHGTFAALEEVLEERKIKAIDGILLDLGVSSPQVEDAKRGFSFRLD 124

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM    G+SA + +     K +  ++   GEE+ A +IA  IV  R   P  +T+
Sbjct: 125 GPLDMRMDSTRGMSAREWLAVETEKKIAEVIYQYGEERFAFQIAKEIVAGRAIQPIDSTK 184

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + V   +  + +PATR+FQA+RI+VN E+EEL  GL  A + L   G + V+S
Sbjct: 185 QLAQIVARAVKTFEKGK-NPATRTFQAIRIYVNRELEELEIGLEKAWQRLGLEGRMSVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+FFA ++   M  R +    S       + + K  + P+  +V  N R+R
Sbjct: 244 FHSLEDRIVKRFFAGKATVKMPDRRLPIRASELPRPEMKLLGK--IKPSAAEVKRNVRAR 301

Query: 308 SAKLRAGMRTV 318
           SA LR   R  
Sbjct: 302 SAILRVATRVA 312


>gi|15837392|ref|NP_298080.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa 9a5c]
 gi|20139246|sp|Q9PF88|RSMH_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9105686|gb|AAF83600.1|AE003919_11 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 313

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HVPVL  + +  L        LD TFG GG++R   ++   G  ++ +D+DP A++   
Sbjct: 2   THVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQLLGPGGRLLVMDKDPEAIAMA- 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDM
Sbjct: 61  ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFVKDGPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ L
Sbjct: 121 RMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAEL 180

Query: 195 IQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           I   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 181 IASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F +  +      R +        + + I +  +   ++++  N R+RSA 
Sbjct: 241 HSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAV 299

Query: 311 LRAGMR 316
           LR   +
Sbjct: 300 LRVAEK 305


>gi|284045229|ref|YP_003395569.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684]
 gi|283949450|gb|ADB52194.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684]
          Length = 314

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 169/312 (54%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
             G H+PVL  ++I LL+P PG+V++D T G GG++R           +I +DRDP A  
Sbjct: 1   MTGIHIPVLAGELIELLDPQPGQVVVDCTLGGGGHARLVAGRIGPTGTLIGIDRDPIAEE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              E   +        +A F+Q  +         D V  DLG+SSMQ+D  +RGFS+   
Sbjct: 61  RFAELTAEVSCTTRFIRADFAQGLEQLAREGVQADLVYMDLGMSSMQVDTWERGFSYAYD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A +VVN  + + L R+L   GEE+ AS+IA AI + R+  P +TTQ
Sbjct: 121 APLDMRMDSEQELTAHEVVNGWDERRLARLLKEYGEERYASKIARAIARTREQQPIETTQ 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +    +    HPA R+FQA+RI VN E+E++  GL  A   L  GG L  +
Sbjct: 181 ALVDVIKSAIPIPAQFGGGHPAKRTFQAIRIAVNEELEQIDDGLPFAWDVLAPGGRLAAI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR VK+F   R+   +      I +       + +T++ + PT  +VA N R++
Sbjct: 241 SFHSLEDRRVKRFLVDRARGCICPPDLPICACGRTPEGELLTRRAIAPTAGEVAHNPRAK 300

Query: 308 SAKLRAGMRTVE 319
           SA LR  ++  E
Sbjct: 301 SAHLRGALKLKE 312


>gi|109914373|sp|Q5XAL3|RSMH_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  ++A N+R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHSELAANKRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|312959049|ref|ZP_07773568.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas
           fluorescens WH6]
 gi|311286819|gb|EFQ65381.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas
           fluorescens WH6]
          Length = 315

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR        G  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPGGKLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     +      V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA+  +  A V+++ R+    GEE+ A R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRELQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F             R++            I  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|89095267|ref|ZP_01168188.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92]
 gi|89080474|gb|EAR59725.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92]
          Length = 312

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 111/315 (35%), Positives = 167/315 (53%), Gaps = 12/315 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +      H+ VLL++ +  L        +D TFG GG+S    +       ++ +D+DP 
Sbjct: 1   MSQE-FKHITVLLDEAVDALVQDKSGFYVDGTFGRGGHSSLVLQGLDENGRLMGIDKDPT 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGF 125
           A++   E  +D +E+FS+   +F+QLQ +V     D  VDGV+ DLGVSS Q+D   RGF
Sbjct: 60  AIAHAHERFKD-EERFSIAHGSFAQLQQFVTERGMDGKVDGVLLDLGVSSPQLDDASRGF 118

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF   GPLDMRM   SG SA++ + +A   ++  ++   GEEK + R+A AIV  R   P
Sbjct: 119 SFLNDGPLDMRMDTSSGESAAEWIARAEESEIADVIYTYGEEKFSRRMAKAIVNYRAETP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ +I +     +  + +PATR+FQ +RI +N E+E+L + L  A   LK GG 
Sbjct: 179 ITTTAQLAKIIAEANPAWEKGK-NPATRAFQGIRIHINKELEDLEKCLDQALDMLKVGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFN 303
           L+V+SFHSLEDR+VK+F          +   IP        +     K    +  +   N
Sbjct: 238 LVVISFHSLEDRIVKRFIRQHVKGDEHLPPGIPFTNDMLKIRMKNVGKAKKASAGETKDN 297

Query: 304 RRSRSAKLRAGMRTV 318
            R+RSA +R   +  
Sbjct: 298 VRARSAVMRVAEKVA 312


>gi|263506479|sp|B0U504|RSMH_XYLFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 313

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A++   
Sbjct: 2   THVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA- 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +     +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDM
Sbjct: 61  ERVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ L
Sbjct: 121 RMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAEL 180

Query: 195 IQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           I   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 181 IASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F +  +      R +        + + I +  +   ++++  N R+RSA 
Sbjct: 241 HSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAV 299

Query: 311 LRAGMR 316
           LR   +
Sbjct: 300 LRVAEK 305


>gi|226355756|ref|YP_002785496.1| S-adenosyl-methyltransferase MraW [Deinococcus deserti VCD115]
 gi|263447379|sp|C1D1L8|RSMH_DEIDV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226317746|gb|ACO45742.1| putative Methyltransferase [Deinococcus deserti VCD115]
          Length = 300

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 169/308 (54%), Gaps = 18/308 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
                     H  VL  +V+  L P PGK I+D T G  G++R   + G++V  +D+DPF
Sbjct: 5   EDTTTAESLIHTSVLSAEVLEALAPTPGKTIVDGTLGGAGHTRLLLEAGAHVYGIDQDPF 64

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+   +E                  L +      VDG++ D+GVSS Q+D   RGFS+  
Sbjct: 65  ALDRAREAGLPNLTVLQGNYRDMVSLLEQAGVSQVDGILLDIGVSSFQLDDAGRGFSYHT 124

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             PLDMRMS SG SA+DVVN    +DL  I+   GE++ + RIA AI + RQ AP +TT 
Sbjct: 125 EAPLDMRMSQSGESAADVVNTYEEEDLAAIIYEYGEDRLSRRIARAIGQARQKAPIETTV 184

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++++      +  IHPA R+FQALRI VN+E+  L  GL++AE  L+ GG L V+S
Sbjct: 185 QLAEIVKRAYPGF-SKGIHPARRTFQALRIHVNDELGALRDGLQAAETLLRPGGRLAVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+F                      V Q +TK+ VV + E+ A N RSRSA
Sbjct: 244 FHSLEDRIVKRFLLGSE-----------------VLQPLTKRPVVASDEEQAINPRSRSA 286

Query: 310 KLRAGMRT 317
           KLRA  R 
Sbjct: 287 KLRAAERV 294


>gi|320540413|ref|ZP_08040063.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Serratia symbiotica str. Tucson]
 gi|320029344|gb|EFW11373.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Serratia symbiotica str. Tucson]
          Length = 313

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 171/312 (54%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN       +D TFG GG+S            ++A+DRDP A++  +
Sbjct: 6   KHATVLLDEAVNGLNIRSNGTYIDGTFGRGGHSCLILSQLGPEGRLLAIDRDPQAIAAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F++    FS L DYV ++     +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---DDPRFTIVHGPFSALSDYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T+ 
Sbjct: 123 PLDMRMDPSTGLSAAEWLMKAEADDIAWVLKTFGEERFAKRIACAIVERNRVEPMTRTKQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       +    HPATRSFQA+RI++N+E+EE+   L    + L   G L ++SF
Sbjct: 183 LADLIAGA-SPIREKHKHPATRSFQAIRIYINSELEEIECALNGTLEVLAPQGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S    A   +  +            + + K  ++P++ +VA N R
Sbjct: 242 HSLEDRIVKRFIRHHSRGAQAPAGIPLTEEQLRSMGGRTLKVLGK--MMPSEAEVAGNPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   R 
Sbjct: 300 ARSSVLRIAQRV 311


>gi|300788105|ref|YP_003768396.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32]
 gi|299797619|gb|ADJ47994.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32]
          Length = 317

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 10/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           T  +HVPVLL +++ L  P       V++DAT G GG+S +  +    +  +ALDRDP A
Sbjct: 2   TAPEHVPVLLSRIVELFTPVFTDRDGVLVDATVGLGGHSDALLEAFPRLRLVALDRDPAA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++       +  L + +     +  DG++FDLGVSSMQ+D  +RGF++
Sbjct: 62  LEKSAERLARHGDRVDFVHTVYDGLPEALESVGLEKADGILFDLGVSSMQLDRAERGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K  PLDMRM  + G +A+DV+N     +L RIL   GEE+ A RI  A+V  R+  PF 
Sbjct: 122 SKDSPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVKAVVAAREKEPFT 181

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           T+  L  L+   V   ++    HPA R+FQALRI VN E+E L + + +A  AL  GG +
Sbjct: 182 TSGRLVELLYDAVPAATRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGALPVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V S+ SLEDRLVK+  A  +         +    H    + +T+      +E++  N R
Sbjct: 242 VVESYQSLEDRLVKQALAELAKSRTPEGLPVELPGHGPELKLLTRGAEKAGEEEIERNPR 301

Query: 306 SRSAKLRAGMRTVER 320
           + S +LRA  R  E 
Sbjct: 302 AASVRLRAAERIGEP 316


>gi|304310311|ref|YP_003809909.1| Methyltransferase involved in cell envelope biogenesis [gamma
           proteobacterium HdN1]
 gi|301796044|emb|CBL44248.1| Methyltransferase involved in cell envelope biogenesis [gamma
           proteobacterium HdN1]
          Length = 310

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 122/307 (39%), Positives = 179/307 (58%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + +D TFG GG++R+     S    ++  D+DP A++ G +
Sbjct: 6   HRPVLLQEVIENLLTDTAGIYVDGTFGRGGHARALLARLSADARLVGFDKDPEAIAVGLQ 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+   +F+++            V GV+ DLGVSS Q+D   RGFSF   GP
Sbjct: 66  -LAAEDARFSIVHGSFAEIGTRPELAGLQGTVSGVLLDLGVSSPQLDDASRGFSFMNDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G SA+D +N  + K +  +L  LGEE+ A RIA AIV +R+ +P  TT+ L
Sbjct: 125 LDMRMNNDAGESAADWLNHEDAKQIEWVLRELGEERFAGRIARAIVAQREMSPLCTTKQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI K V   + ++ HPATRSFQA+RI+VN E+++L  GL ++ + +K GG + V+SFH
Sbjct: 185 ADLIYKAVPVREKHK-HPATRSFQAVRIWVNRELQDLEVGLAASLELVKVGGRIAVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+FF          R +  + A   +      K V P+ ++VA N RSRSA L
Sbjct: 244 SLEDRIVKQFFEKHVKGEQLPRGLPVTGAALGIRLRHVAKKVRPSDDEVAVNVRSRSATL 303

Query: 312 RAGMRTV 318
           R   +  
Sbjct: 304 RVVEKIA 310


>gi|195978690|ref|YP_002123934.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|262826706|sp|B4U4K4|RSMH_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|195975395|gb|ACG62921.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 316

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D+D  A+   QE
Sbjct: 7   HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  +  F  L+  + +     +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A +VVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++LI+      +   + HPA + FQA+RI VN+E+      ++ A + L   G + V++
Sbjct: 187 LAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S            +      + +++K ++P+Q+++  N R+ SA
Sbjct: 247 FHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQKELMANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKV 314


>gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
 gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
          Length = 312

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 180/312 (57%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74
               H PVL  ++++ L P   +  LD TFGAGGYS+         VIA DRDP  +S  
Sbjct: 1   MNNIHTPVLATEMLSYLAPVDNETYLDCTFGAGGYSKLILSNCNCKVIAFDRDPAVISIA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + Y  +F+ F   F +   Y+     ++G+V DLGVSSMQ+D  +RGFSF+    L
Sbjct: 61  SQFYQQYPNRFTFFNENFVEANKYLSKLDKLNGIVMDLGVSSMQLDEANRGFSFRYDAEL 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G  AS+ VN+A+   L  I+   GEE +A++IA  IV  R+  P  TT  L++
Sbjct: 121 DMRMSQKGYKASEFVNEASEHQLADIIYKFGEENKANKIAKHIVLARKKKPITTTLQLAN 180

Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +I++ V    + K N+I  AT++FQA+RIF+N+E+  +   L  + + L   G LIVVSF
Sbjct: 181 IIREAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSR 307
           H+LED ++KKF    + K +A      +   P    V   +TKK+ VPT+ ++  N RSR
Sbjct: 241 HALEDAIIKKFMHQNAVKKVAQSKYSTNRQSPLQNGVLYLLTKKIAVPTRTEIINNPRSR 300

Query: 308 SAKLRAGMRTVE 319
           SA+LRA ++  E
Sbjct: 301 SARLRAALKINE 312


>gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6192]
 gi|306532305|gb|ADN01839.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6192]
          Length = 324

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 176/325 (54%), Gaps = 7/325 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      HVPVL E+V A L+     +++DAT G GG+S +  +   G  ++ +D DP  
Sbjct: 1   MVSMEIVHVPVLREEVGAFLSVRE-GLVVDATLGEGGHSEALLESRPGIRILGVDADPIM 59

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +S   E +  + ++  L Q  F + L+ +  +    G++ DLG+SS  ++   RGFSF +
Sbjct: 60  LSRAGERLSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLR 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR+S    + ASDVVN  +  +L  I    GEE  + RIA AIV  R+  P  T+
Sbjct: 120 REPLDMRLSPYLPMKASDVVNTYSETELVDIFSRFGEEPFSKRIARAIVSERRKMPITTS 179

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ ++ K V    +  RIHPATR FQALRI VN E+E + + +R+  + L  GG + V
Sbjct: 180 DHLAEVVMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+ F   +G         I       + + +TKK V P +E+V  N  S
Sbjct: 240 ISFHSLEDRIVKRLFRFYAGACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRANPAS 299

Query: 307 RSAKLRAGMRTVERSIEDDSFVHLP 331
           RSA+LR   +  + +   +    LP
Sbjct: 300 RSARLRVLEKVRDAAHLREEGHALP 324


>gi|329118760|ref|ZP_08247458.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465107|gb|EGF11394.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 316

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 166/314 (52%), Gaps = 10/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +      HV VLL + +  L      V +D TFG GG+SR           ++  D+DP 
Sbjct: 1   MSSEAFSHVSVLLHEAVDALAVVSDGVYVDGTFGRGGHSRLILSHLGANGRLVVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
                   +     + S+    FS  Q   D +    +DG +FDLG+SS QID G RGFS
Sbjct: 61  -AVAAARELAAQDGRVSVVHDGFSCFQTALDALNVGQIDGALFDLGISSPQIDDGSRGFS 119

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM    G+SA++ +  A+  ++  ++   GEE+ A +IA AIV +R + P 
Sbjct: 120 FRFDAPLDMRMDTTRGMSAAEWLAAADEDEICEVIRNYGEERFARQIARAIVAQRGTNPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ +  + V  ++     PATR+FQA+RIF+N E+EE+A  L  A   LK+GG L
Sbjct: 180 DTTGKLAQVAAQNV-RTRERGQDPATRTFQAVRIFINRELEEIAAALPQAAGRLKSGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+FF   S      R  +   A  P    ++  K V  +  +VA N 
Sbjct: 239 AVISFHSLEDRIVKQFFRRHSEHEPLPRWAMVREADLPQPPLALVGKAVKASAAEVAANP 298

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA LR   RT 
Sbjct: 299 RARSAVLRVARRTD 312


>gi|291571686|dbj|BAI93958.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis NIES-39]
          Length = 312

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 28/312 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PVL  ++I  L    G   LDAT G GG+++   +      V A+DRD  A++  +  
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78

Query: 78  MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + D      ++   +   FSQ          DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA++++N  + K L  I    GEE+ + RIA  IV+  +     T Q   
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVE--KRPFQTTEQLAG 194

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++        +  RIHPATR FQALRI VN E+  L   L +A   LK GG + ++SFHS
Sbjct: 195 AIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK  F                  H  + + +TKK + P  ++++ N R+RSAKLR
Sbjct: 255 LEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKLR 297

Query: 313 AGMRTVERSIED 324
              R    ++  
Sbjct: 298 LAQRNTNETLNP 309


>gi|307132591|ref|YP_003884607.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937]
 gi|306530120|gb|ADN00051.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937]
          Length = 313

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 173/314 (55%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP AV+
Sbjct: 3   ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQAVA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS+L +YV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDARFSIIHGPFSELAEYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V
Sbjct: 180 TKALAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALDGALQVLAPEGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  +            +++ K  ++P  E+VA 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSRGGQTLKAVGK--MMPPDEEVAD 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRFAER 310


>gi|313891489|ref|ZP_07825102.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII
           345-E]
 gi|313120066|gb|EFR43245.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII
           345-E]
          Length = 310

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               HV VL  ++I+ +      V  D T G  G+     +    G+ +I +D+D  A+ 
Sbjct: 1   MEFKHVTVLRREMISAVLTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  M+D     +   + FS +++ + +     ++G +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  AAELRMKDCTCNLNFVHSNFSNIKNILSEKNLNKINGFIFDLGVSSYQLDEANRGFSYMH 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+ +   +A DVVN+ + + +  I+   GEE+ A RIA  IV  R++   +TT
Sbjct: 121 EGRLDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L S+I+  +   ++ N  HPA R+FQA+RI VNNE+  +   +      L +GG + +
Sbjct: 181 GELVSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK+ F + + + +           H    + +    + PT E++A N R+
Sbjct: 241 ITFHSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRA 299

Query: 307 RSAKLRAGMRT 317
           RSA LR   + 
Sbjct: 300 RSAILRVAEKI 310


>gi|58698054|ref|ZP_00372978.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629940|ref|YP_002726731.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi]
 gi|254813210|sp|C0R598|RSMH_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58535411|gb|EAL59486.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225591921|gb|ACN94940.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi]
          Length = 293

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 181/303 (59%), Gaps = 18/303 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        + 
Sbjct: 2   THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              Y ++  LF   FS +++ +       +DG+VFD+GVSSMQ+D GDRGFSF   GPLD
Sbjct: 62  SVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQLDNGDRGFSFLHDGPLD 121

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           M M  S   +AS  VN    +++   +   G E+ + +IA AIV  R+    +TT +L+ 
Sbjct: 122 MSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAIVNARKKKTIKTTFELAD 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L   G LIVV+FHSL
Sbjct: 182 IVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK FF                      F  + KKV+  + E+V+ N RSRSAKLRA
Sbjct: 241 EDRIVKTFFKDLCATDC------------KTFSLLNKKVIEASIEEVSANPRSRSAKLRA 288

Query: 314 GMR 316
             R
Sbjct: 289 IQR 291


>gi|66047337|ref|YP_237178.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500766|sp|Q4ZNY2|RSMH_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|63258044|gb|AAY39140.1| methyltransferase [Pseudomonas syringae pv. syringae B728a]
          Length = 313

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    GISA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|330973397|gb|EGH73463.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 313

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|284053843|ref|ZP_06384053.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis str.
           Paraca]
          Length = 312

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 28/312 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PVL  ++I  L    G   LDAT G GG+++   +      V A+DRD  A++  +  
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78

Query: 78  MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + D      ++   +   FSQ          DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA++++N  + K L  I    GEE+ + RIA  IV+  +     T Q   
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVQ--KRPFQTTEQLAG 194

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++        +  RIHPATR FQALRI VN E+  L   L +A   LK GG + ++SFHS
Sbjct: 195 AIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK  F                  H  + + +TKK + P  ++++ N R+RSAKLR
Sbjct: 255 LEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKLR 297

Query: 313 AGMRTVERSIED 324
              R    ++  
Sbjct: 298 LAQRNTNETLNP 309


>gi|260576880|ref|ZP_05844863.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2]
 gi|259020917|gb|EEW24230.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2]
          Length = 334

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 145/319 (45%), Positives = 187/319 (58%), Gaps = 5/319 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M + I      HVPVLL  ++A + P    V LD TFGAGGY+R     G+  VI +DRD
Sbjct: 1   MMAGIAPA-APHVPVLLRPLLAAVAPVQ-GVWLDGTFGAGGYARGLLAAGAAKVIGIDRD 58

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+        +Y ++  L    FS+L     +  +DG+V DLGVSSMQ+D  +RGFSF
Sbjct: 59  PLALQMAAAWAGEYGDRLRLVAGNFSELDVLAGE-PLDGIVLDLGVSSMQLDLPERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN      L  IL   GEE+ + RIA AIV  R  AP  T
Sbjct: 118 LRDGPLDMRMSQQGDSAADIVNATEEGALADILYTYGEERASRRIAKAIVAARAIAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++   +   K  + H ATRSFQA+RI VN E  EL +GL +AE+ALK GGLL V
Sbjct: 178 TLRLAEIVAGCLPRPKPGQSHAATRSFQAIRIAVNTEFSELVEGLAAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHSLEDR+VK+FF  RSG         P+ A     F  +T++ V P   ++A N R+
Sbjct: 238 VTFHSLEDRIVKRFFQLRSGNEANANRYAPAKAEDAPRFDLVTRRAVAPDDAELAENPRA 297

Query: 307 RSAKLRAGMRTVERSIEDD 325
           RSAKLR G RT   +   D
Sbjct: 298 RSAKLRVGRRTEAPAGTSD 316


>gi|229588482|ref|YP_002870601.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens SBW25]
 gi|262825100|sp|C3KCS2|RSMH_PSEFS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229360348|emb|CAY47205.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 315

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGSDGKLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     +      V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA+  +  A V+++ R+    GEE+ A R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERREIQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F             R++            I  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|330964049|gb|EGH64309.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 313

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L   P    LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRPDGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F    SQ Q+      V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|120437110|ref|YP_862796.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803]
 gi|171460858|sp|A0M534|RSMH_GRAFK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117579260|emb|CAL67729.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803]
          Length = 302

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL++ +  L+  P  + +D TFG GG+S+   K       + A D+D  A+  
Sbjct: 5   MEYHNPVLLKESVDGLDVKPDGIYVDVTFGGGGHSKEILKRLGPDGKLYAFDQDKDALEN 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                +    +F+L    F  L+    +   K VDGV+ D GVSS Q +  +RGFS +  
Sbjct: 65  -----KIEDGRFTLINENFRYLKRFLRFYGIKKVDGVLGDFGVSSHQFNEAERGFSTRFD 119

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+     SA +V+N+   + L ++     + K A ++A  IV  R++ P +T++
Sbjct: 120 AKLDMRMNQGDKLSAYEVINEYEEEQLKKLFWAYADLKNAPKLARTIVSERKNNPIETSE 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ L++  ++  K N+I    + +QA+RI VN EIE L + L   E+ LK GG L ++S
Sbjct: 180 QLNDLLKPLLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEEILKPGGRLSLIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK++  S   +    + M  + + P  F+ +   +++P++E++  N R+RSA
Sbjct: 238 YHSLEDRLVKRYIRSGLFEGEPEKDMYGNISVP--FKKVNG-LIIPSKEEIQQNNRARSA 294

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 295 KLRVARK 301


>gi|294056587|ref|YP_003550245.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM
           45221]
 gi|293615920|gb|ADE56075.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM
           45221]
          Length = 318

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 122/318 (38%), Positives = 187/318 (58%), Gaps = 11/318 (3%)

Query: 9   MSSAIHHTIGD-----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNV 61
           M S+I   +       HVPVLL + + LL+P  G  +LD TFG GG++R+      G  V
Sbjct: 1   MLSSIDDVLNPANYGGHVPVLLRETLELLSPRAGAKLLDGTFGGGGHTRALLGAAEGVTV 60

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           +ALDRDP AV    E   ++ ++F L    F  L D   + G DG++FD G+SS Q+D  
Sbjct: 61  VALDRDPEAVERAAEVEAEFGQRFRLVSMNFGDLCDLE-ESGFDGILFDFGLSSFQLDTA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF++  P+DMRM+ + GISA++ +  A+ + L R +   GEEK+  ++  +I+  R
Sbjct: 120 ERGFSFREDAPVDMRMNPNAGISAAEFLETADEEALVRAVRNYGEEKRWRKVVQSILSAR 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            +   Q T  LS LI   V      R  IHPATRSFQ +R+ VN+E+  + +GL +A + 
Sbjct: 180 GTGRLQRTSSLSELIADAVGPGPRGRKTIHPATRSFQGIRVEVNDELNAIERGLPAAFER 239

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L++GG L  +SFHSLEDR+VK+F    +G+          +    + + I+ + +VP ++
Sbjct: 240 LQSGGTLAAISFHSLEDRIVKRFCRRMAGRPEHAGDSRTQDERQVLGKMISTRPIVPAED 299

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N RSRSA++RA  +
Sbjct: 300 EIAINPRSRSARMRAIRK 317


>gi|281424950|ref|ZP_06255863.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302]
 gi|281400794|gb|EFB31625.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302]
          Length = 315

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 17/317 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HVPVLL+  +  LN   G + +D TFG GG+SR         +++ + D+D  
Sbjct: 2   VKTAETYHVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDAD 61

Query: 70  AVSC------GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120
           A           E       +F+  ++ F  L++++       +DG++ DLGVSS   D 
Sbjct: 62  AEQNVMHREGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDD 121

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSF+   PLDMRM+   G++A+DVVN  + + L  +  + GE KQ+ RIA A+VK 
Sbjct: 122 ESRGFSFRFDAPLDMRMNKRAGLTAADVVNDYDEEALANLFYLYGELKQSRRIAAALVKA 181

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R      TTQD     +    F +        + FQALRI VN+E++ L + L+SA + L
Sbjct: 182 RAQQRIATTQDFLKATEP--LFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           ++GG L V+++HSLEDR+VK    + + +   V+        P  F  +  KV+VP+ ++
Sbjct: 240 RSGGRLSVITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADE 297

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RSRSAKLR   +
Sbjct: 298 QQENPRSRSAKLRIAEK 314


>gi|198274315|ref|ZP_03206847.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135]
 gi|198272805|gb|EDY97074.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135]
          Length = 304

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
                 H+PVLL + I  ++   G   +D TFG GG+SR   +     S + + D+D  A
Sbjct: 3   KTEPTYHIPVLLHESIEGMHLQSGGTYVDVTFGGGGHSREILRNMDDKSRLFSFDQDADA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
                E      ++F+  ++ F  L +++       VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIINDKRFTFVRSNFRYLHNFLRYYGVEEVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+   GI+A+D++N    + L  +  + GE K + ++A  +VK R   P +
Sbjct: 118 RFDGKLDMRMNKRAGITAADIINTYEEEKLADLFYLYGELKNSRKLAATLVKARAQKPVE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +++    + +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFIEIVKP--LYGREREKKEMAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A +    +   P  F+ I  KV++P+++++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNIEGKAKQDFFGNVETP--FKLINNKVIIPSEDEIQRNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|325473769|gb|EGC76957.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Treponema
           denticola F0402]
          Length = 315

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 8/307 (2%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLLE+ +  L P     + +D T G GG++ +F K    +  I +D D       +E
Sbjct: 5   HTSVLLEECLEFLKPDVSDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++ + E+         +     P      + ++ DLG+S        RGFSF    PLD
Sbjct: 65  RLKPFGERIRFHLGWSDEFFKNYPKDSAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    +SA+D+VN  N KDL  ++   GEE+ + +IA  IV++R +A F T ++L+ 
Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSTAKELAD 184

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I K V    ++ +IHPAT++FQALRI VN E++ L + L +A   L   G L +++FHS
Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK +F           +M           + +TKK V  + E++  N  SRSA+L
Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304

Query: 312 RAGMRTV 318
           R   +  
Sbjct: 305 RVVRKID 311


>gi|258645236|ref|ZP_05732705.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470]
 gi|260402586|gb|EEW96133.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470]
          Length = 310

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VL  ++++ +        +D T G GG+S +          +I +D+D  A+   +E
Sbjct: 5   HTTVLQNEMVSHVLTNTNGTYVDCTLGGGGHSLALAEGLSNLGCIIGVDQDGEAIEAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +R  + +F   +  FS +   + +     VDG +FDLGVSS Q+D G RGFS+  +G L
Sbjct: 65  RLRGAQCKFISVRDNFSNINGILKENGIEKVDGFIFDLGVSSHQLDDGARGFSYMNNGKL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A DV+N    + L  I+   GEE+ ASRI   I + R   P  TT++L 
Sbjct: 125 DMRMDQRNSLTAYDVINTYTKEHLRNIIRDYGEERWASRIVDFIDRARMRRPISTTEELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  + + +  HPA R+FQA+RI VNNE+  L + +      L  GG L V++FH
Sbjct: 185 HVIKAAIPSAARRDGPHPAKRTFQAIRIEVNNELGILRKAMEDCINHLNKGGRLGVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F   S   +      I    H    +S+  K + P+ ++V  N R+RSA 
Sbjct: 245 SLEDRIIKNTFRDMSKDCICPSEIPICICNHRRQVRSV-GKAIRPSPQEVKENPRARSAV 303

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 304 LRVVEKV 310


>gi|269137987|ref|YP_003294687.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202]
 gi|267983647|gb|ACY83476.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202]
 gi|304558034|gb|ADM40698.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda FL6-60]
          Length = 313

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 121/317 (38%), Positives = 176/317 (55%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL++ +A LN     + +D TFG GG+SR           +IA+DRDP   
Sbjct: 2   SENFQHKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDP--- 58

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
                  +    +FS+    FS L DYV +      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 59  QAIAAAAQIDDPRFSIVHGPFSALADYVQEMGLSGRIDGILLDLGVSSPQLDDPERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA+  + QA  +D+  +L   GEE+ A RIA AIV+R ++ P  
Sbjct: 119 MRDGPLDMRMDPSRGLSAAQWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEPLT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L++LI +     K    HPATRSFQA+RI++N+E++E+ + L  A  AL   G L 
Sbjct: 179 RTRELAALISEA-SPFKEKHKHPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDRLVK+F    S      + +  + A          +++ K+  +P + +VA
Sbjct: 238 VISFHSLEDRLVKRFMRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   R  
Sbjct: 296 DNPRARSSVLRVAERIS 312


>gi|294677904|ref|YP_003578519.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003]
 gi|294476724|gb|ADE86112.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003]
          Length = 338

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 149/336 (44%), Positives = 201/336 (59%), Gaps = 8/336 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71
           +      H+PVLL  ++  + P      LD TFGAGGY+R     G   VI +DRDP A 
Sbjct: 1   MDRPDTPHIPVLLRPLLQAVAPV-LGTWLDGTFGAGGYARGLLAAGAGRVIGIDRDPLAF 59

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
                   ++ E+  L + TFS L     +      +GVV DLGVSSMQ+D  +RGFSF 
Sbjct: 60  EMAAPWRGEFGERLVLVENTFSNLDAVAAEIAPEGLNGVVLDLGVSSMQLDQAERGFSFL 119

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRMS SG SA+D+VN A    L  IL   GEE+ + RIA AIV+ R+SAP+++T
Sbjct: 120 RDGPLDMRMSQSGPSAADLVNTAEEGALADILYHYGEERASRRIARAIVEARKSAPYEST 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L + I++ +   K  + HPATRSFQALRI VN+E  +L  GL +AE+ALK GG L VV
Sbjct: 180 KQLVATIERCLPRPKPGQSHPATRSFQALRIAVNDEFGQLIAGLEAAERALKPGGKLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+FF +R+G+     R+   +    A F  +T+K V P + ++A N R+R
Sbjct: 240 TFHSLEDRVVKRFFQARAGRAPGGSRYAPEAAPEAAAFDLVTRKGVGPDEIELAQNPRAR 299

Query: 308 SAKLRAGMRTVERS-IEDDSFVHLP-RLPTLSQFRG 341
           SA LR G RT   +   D S + LP  L    + RG
Sbjct: 300 SAILRIGARTDSPAGRADRSSLGLPAPLFETDRSRG 335


>gi|225871093|ref|YP_002747040.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi
           4047]
 gi|262826692|sp|C0M7A8|RSMH_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225700497|emb|CAW94939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi
           4047]
          Length = 316

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D+D  A+   QE
Sbjct: 7   HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  +  F  L+  + +     +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A +VVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++LI+      +   + HPA + FQA+RI VN+E+      ++ A + L   G + V++
Sbjct: 187 LAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQRAIELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S            +      + +++K ++P+Q+++  N R+ SA
Sbjct: 247 FHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQKELMANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKV 314


>gi|116670123|ref|YP_831056.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24]
 gi|263447796|sp|A0JV86|RSMH_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116610232|gb|ABK02956.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24]
          Length = 332

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 185/322 (57%), Gaps = 15/322 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--NVIA 63
             T   HVPVL ++ I LL P        G+  V++DAT G GG+S +  +     ++I 
Sbjct: 8   KPTSERHVPVLKDRCINLLAPGIEAARQRGETPVVIDATLGMGGHSEALLQRFPDLHLIG 67

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +DRD  A++   E ++ + ++  L  A + ++ D + D     V GV+ DLGVSS+Q+D 
Sbjct: 68  IDRDEEALALAGERLKPFADRTDLVHAVYDEIPDVLRDLGVSEVHGVLMDLGVSSLQLDE 127

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGF++    PLDMRM    G +A+DVVN  + +DL RI+   GEEK A RIA+ IV  
Sbjct: 128 RERGFAYSFDAPLDMRMDTSRGQTAADVVNNYSEEDLVRIIRKWGEEKFAGRIANRIVAA 187

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R++ PF TT +L   I+  V         HPA R+FQALRI VN E++ L + + +A  A
Sbjct: 188 REAKPFATTGELVDTIRAVVPAGAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDA 247

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V+S+HSLED++VKK F + S     +   +    H    +++TK   VPT +
Sbjct: 248 LAMGGRVVVMSYHSLEDKIVKKVFQTGSKSSAPLGFPVELEEHKPELKTLTKGTEVPTAD 307

Query: 299 DVAFNRRSRSAKLRAGMRTVER 320
           ++A N R+ SA+LRA  R   R
Sbjct: 308 EIAENPRAASARLRAVERIRAR 329


>gi|299143950|ref|ZP_07037030.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518435|gb|EFI42174.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 312

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 161/311 (51%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VL E  I LLN     + +D T G  G+S    K+      +I +D+D  A+ 
Sbjct: 1   MKFNHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALE 60

Query: 73  CGQETMRDYKEQ----FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +E + +        F+     F+ + D +    VDG + DLGVSS Q D GDRGFS+ 
Sbjct: 61  KSKEVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYN 120

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  +   SA D+VN  + +++ +IL    EEK A RIA  IVK R   P  T
Sbjct: 121 YDAKLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDT 180

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +  + +  + HPA ++FQALRI  NNE++ L   L      L  GG + 
Sbjct: 181 TFELVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+SFHSLEDR+VK+ F       +   +  + +       + IT+K +V +++++  N R
Sbjct: 241 VISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIVASEKELIENNR 300

Query: 306 SRSAKLRAGMR 316
           + SAKLR   +
Sbjct: 301 AHSAKLRVAEK 311


>gi|299142294|ref|ZP_07035427.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735]
 gi|298576383|gb|EFI48256.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735]
          Length = 315

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 17/317 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HVPVLL+  +  LN   G + +D TFG GG+SR         +++ + D+D  
Sbjct: 2   VKTAETYHVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDAD 61

Query: 70  AVSC------GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120
           A           E       +F+  ++ F  L++++       +DG++ DLGVSS   D 
Sbjct: 62  AEQNVMHREGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDD 121

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSF+   PLDMRM+   G++A+DVVN  N + L  +  + GE KQ+ RIA A++K 
Sbjct: 122 ESRGFSFRFDAPLDMRMNKRAGLTAADVVNDYNEEALANLFYLYGELKQSRRIAAALIKA 181

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R      TTQD     +    F +        + FQALRI VN+E++ L + L+SA + L
Sbjct: 182 RAQQRIATTQDFLKATEP--LFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           ++GG L V+++HSLEDR+VK    + + +   V+        P  F  +  KV+VP+ ++
Sbjct: 240 RSGGRLSVITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADE 297

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RSRSAKLR   +
Sbjct: 298 QQENPRSRSAKLRIAEK 314


>gi|225867991|ref|YP_002743939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus]
 gi|262827289|sp|C0MGV8|RSMH_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225701267|emb|CAW98245.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus]
          Length = 316

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D+D  A+   QE
Sbjct: 7   HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  +  F  L+  + +     +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  QLKPYIDKGQVTFIKDNFRHLKVRLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A +VVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++LI+      +   + HPA + FQA+RI VN+E+      ++ A + L   G + V++
Sbjct: 187 LAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S            +      + +++K ++P+Q+++  N R+ SA
Sbjct: 247 FHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQKELMANNRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVARKV 314


>gi|83648530|ref|YP_436965.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396]
 gi|123530830|sp|Q2S9Y4|RSMH_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83636573|gb|ABC32540.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396]
          Length = 309

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 10/311 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HV VLL + +  L      + +D TFG GG+S    K       ++ +D+DP 
Sbjct: 1   MESNQYGHVTVLLAEAVEALGVKADGLYIDGTFGRGGHSAEILKALGPQGRLLGIDKDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E      ++F   Q +F+ +  +V +    GVDGV+ DLGVSS Q+D  +RGFS
Sbjct: 61  ARRTAMERFS-GDDRFLFRQGSFADMASFVSELQWPGVDGVLLDLGVSSPQLDEAERGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM    G+SAS+ VN A  ++++++L  LGEE+ A R+A AIV  RQ+ P 
Sbjct: 120 FMQDGPLDMRMDPDSGLSASEWVNTAKEEEISKVLWDLGEERFARRMAKAIVAARQTQPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+ ++       +  + +PATR+FQA+RIF+N E+++LAQGL  A   LK GG L
Sbjct: 180 TRTLQLAEIVAAANPRWEKGK-NPATRAFQAIRIFINRELDDLAQGLEQAFGVLKPGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+SFHSLEDR+VK++           + +   +  P   + + KK +   + +V  N R
Sbjct: 239 TVISFHSLEDRMVKQYMRDIVRGPKTPKWLPVVDDAPPKAKLVGKK-IRAGETEVVANVR 297

Query: 306 SRSAKLRAGMR 316
           +RSA +R   +
Sbjct: 298 ARSAVMRVLEK 308


>gi|323343877|ref|ZP_08084104.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella oralis ATCC 33269]
 gi|323095696|gb|EFZ38270.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella oralis ATCC 33269]
          Length = 304

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 12/304 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
             H+PVLL++ I  LN  P  V +D TFG GG+SR   +       + + D+D  A    
Sbjct: 7   TYHIPVLLKESIDGLNIQPEGVYVDVTFGGGGHSREILRRLGKNGRLYSFDQDADAE--- 63

Query: 75  QETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           Q  + D +  F      +      Y     +DG++ DLGVSS   D   RGFSF+ + PL
Sbjct: 64  QNIVADSRFTFVRSNFRYLKNWMRYYKIDHIDGLLADLGVSSHHFDDESRGFSFRFNAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   G +A+D+VN+ + + L  +  + GE K + RIA AIVK R +    TT+   
Sbjct: 124 DMRMNKRAGTTAADIVNKYDEETLANVFYLYGELKNSRRIAAAIVKARATYEIGTTRAFI 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             I+    F +        + FQALRI VN+E+  L + L  A K L  GG L ++++HS
Sbjct: 184 DAIEP--LFKREREKKDMAKLFQALRIEVNHEMRALKEMLEGASKCLGTGGRLSIITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +        P  F  I  KV+ P+ E+   N RSRSAKLR
Sbjct: 242 LEDRMVKNMMRTGNVEGKLHQDFYGHIETP--FVLINSKVITPSHEEQEQNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|294792047|ref|ZP_06757195.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27]
 gi|294457277|gb|EFG25639.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72
              +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S
Sbjct: 2   MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEILDPEGMIIGLDQDEDALS 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D K Q       FS L+D + +     VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 62  VARQRLSDLKCQVLTIPTNFSNLKDALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT
Sbjct: 122 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 182 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     +         K + P+  ++  N R+R
Sbjct: 242 ITFHSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 301

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 302 SAKLRVAVK 310


>gi|256379773|ref|YP_003103433.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827]
 gi|255924076|gb|ACU39587.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827]
          Length = 316

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 171/312 (54%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
               HVPVLL++V+ LL P        V +D T G GG+S +  K      +I LDRDP 
Sbjct: 3   EAARHVPVLLDRVLGLLAPALAGRDDAVFVDCTLGLGGHSEAVLKAHPGVRLIGLDRDPQ 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  +  +  + ++    Q T+  + + V  + VDG++ DLGVSS+Q+D  +RGF++ +
Sbjct: 63  AIALAKARLAPFADRVEFVQTTYDGIAEAVDGRRVDGILMDLGVSSLQLDARERGFAYSQ 122

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRMS  SG +A+DV+N     +L R+L   GEE+ A +IA A+V+ R   PF T+
Sbjct: 123 DAPLDMRMSAGSGETAADVLNTYPAAELARVLRDYGEERFARKIAAAVVRERAKEPFTTS 182

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  L+  +V   ++    HPA R+FQALRI VN E+E L   L +A   L  GG ++V
Sbjct: 183 GRLVELLYASVPAATRRTGGHPAKRTFQALRIEVNRELESLRAALPAALSVLAVGGRIVV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            S+ SLEDR+VK+  A  +     V   +    H      +T+   V  + ++  N R+ 
Sbjct: 243 ESYQSLEDRMVKRALADLAASRTPVGLPVELPGHGPELTLLTRGAEVANESEIEDNPRAA 302

Query: 308 SAKLRAGMRTVE 319
             +LRA  R  E
Sbjct: 303 PVRLRAAERIRE 314


>gi|90416328|ref|ZP_01224260.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2207]
 gi|90332053|gb|EAS47267.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2207]
          Length = 309

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 106/303 (34%), Positives = 166/303 (54%), Gaps = 6/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  +   P    +D TFG GG++            V+A+D+DP A+  G++
Sbjct: 9   HTSVLLHEAIDAVVTDPDGFYIDGTFGRGGHTAELLSRLSEHGRVLAIDKDPQAIEAGRK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              D   + ++   +F+ + D+   + V GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 69  RFAD-DSRLTIVHGSFADMGDWREGREVTGVLLDLGVSSPQLDQAERGFSFMRDGPLDMR 127

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S G+SA++ ++ A   D+ +++   GEE+ A R+A A+V+ R  AP   T  L+ ++
Sbjct: 128 MDTSSGLSAAEWIDTAAEADIAQVIKEFGEERFAKRMAAAVVRERDLAPITRTVQLAKIL 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +  + HPAT++FQA+RIF+N E+++L   L      LK  G L+V+SFHSLED
Sbjct: 188 ADAHPAWERGK-HPATKAFQAIRIFINRELDDLVALLEQVIDLLKIDGRLVVISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK+F   +   +   +++   +    V      K + P   +V  N RSRSA +R   
Sbjct: 247 RKVKRFIRDQERGIKLPKNLPVRDVERGVRLKKIGKAIKPEAVEVGGNVRSRSAVMRVAE 306

Query: 316 RTV 318
           R  
Sbjct: 307 RVA 309


>gi|333029398|ref|ZP_08457459.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           coprosuis DSM 18011]
 gi|332739995|gb|EGJ70477.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           coprosuis DSM 18011]
          Length = 305

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 156/307 (50%), Gaps = 16/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
              H+PVLL + I  LN  P  + +D TFG GG+S+          ++ + D+D  A   
Sbjct: 7   QPYHIPVLLNESINGLNIDPQGIYVDVTFGGGGHSKEILSHLAPTGHLFSFDQDKDAEKN 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130
                     +F+  ++ F  +++++    V    G++ DLGVSS   D  +RGFSF+  
Sbjct: 67  S-----FQDSRFTFVRSNFRYIKNFLQYYHVTEVSGILADLGVSSHHFDESERGFSFRFD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+     +A+D+VN  + + L  +  + GE K + RIA  IVK R   P +T  
Sbjct: 122 ADLDMRMNTRASKTAADIVNNYSQEQLADVFYLYGELKNSRRIASKIVKYRAENPIKTIA 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
               +I       +  +     + FQALRI VN E+E L + L SA   LK GG L V++
Sbjct: 182 QFIEVITPLFGPQRQKK--DFAKVFQALRIEVNEEMEALREMLISAIGLLKPGGRLAVIT 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK  F + + +    +        P   ++I  KV++PT ++   N RSRSA
Sbjct: 240 YHSLEDRMVKNLFKTGNIEGKLNKDFYGKIISPI--KAINNKVIIPTDQEQELNPRSRSA 297

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 298 KLRIAEK 304


>gi|307294504|ref|ZP_07574346.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum
           L-1]
 gi|306878978|gb|EFN10196.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum
           L-1]
          Length = 321

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 134/318 (42%), Positives = 198/318 (62%), Gaps = 11/318 (3%)

Query: 9   MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
           MS+++        H+PVL+E+V+  L+  PG+  +D TFGAGGYS +    G+ V A DR
Sbjct: 1   MSASVDPAKDPDRHIPVLIEEVLHALSINPGEAHVDGTFGAGGYSSAMAAKGAKVFAFDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDR 123
           DP A+  GQ    +     +L    FS+++  + ++GV     V  D+GVSSMQ+D  +R
Sbjct: 61  DPDAIREGQALADEKG--ITLIAGEFSRMEALLAERGVTSVAGVTLDIGVSSMQLDRPER 118

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSFQ  GPLDM MS SG++A+D +N A  +++  IL   GEE ++ R+A AIV+ R   
Sbjct: 119 GFSFQGDGPLDMTMSQSGMNAADFLNNAPEEEIANILYRYGEEPRSRRVAKAIVEAR--- 175

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P + T  L+++++K +    +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG
Sbjct: 176 PLERTGQLANIVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L +V+FHSLEDR+VK+F  +RS G+    RHM    A PA   +   K V P + ++A 
Sbjct: 236 RLAIVTFHSLEDRIVKQFLRNRSGGEAGGSRHMPQKQAGPAPTFAKPAKAVRPGEAELAR 295

Query: 303 NRRSRSAKLRAGMRTVER 320
           N R+RSA LR+ +RT   
Sbjct: 296 NPRARSATLRSAIRTAAP 313


>gi|297620593|ref|YP_003708730.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044]
 gi|297375894|gb|ADI37724.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044]
          Length = 306

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 11/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSC 73
           +  H+ VLLE+V    +    K  +D T GAGG+S         +   + +D+DP A+  
Sbjct: 1   MIPHLSVLLEEVAESFSDVDLKRFVDGTLGAGGHSAEILSAHPEIQRFLGIDQDPDALEI 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  + E+    +  FS L++++       VDG++ DLGVSSMQ D  +RGFS Q+ 
Sbjct: 61  ARERLSKWSEKVMFQRGNFSDLKEHLAQNGLEKVDGILLDLGVSSMQFDRPERGFSLQQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+     +A+++VN     +L  +    GEEK+    A        + P   T 
Sbjct: 121 GPLDMRMNPEEPLTAAEIVNTWPEAELGDLFKKYGEEKRWRAAAR---AVAAARPISRTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  ++   +   +  +IHPAT  FQALR+ VN EIE + + +  A   L  GG L V+S
Sbjct: 178 ELVEVLTSVLGRPRKGKIHPATLIFQALRLAVNREIERIEEVIPQAIGCLNPGGRLAVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F   +    + R +     +   V   IT+K +VP + +V  N RSRS
Sbjct: 238 FHSLEDRIVKRQFRYLADDKESTRGVGGVFISKEPVVNLITRKPIVPGKAEVERNPRSRS 297

Query: 309 AKLRAGMR 316
           +KLR   +
Sbjct: 298 SKLRVVEK 305


>gi|271502050|ref|YP_003335076.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586]
 gi|270345605|gb|ACZ78370.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586]
          Length = 313

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 173/314 (55%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP AV+
Sbjct: 3   ETFNHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS+L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDARFSIIHGPFSELADYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A K L   G L V
Sbjct: 180 TKALAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALDGALKVLAPEGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  +            +SI K  ++P  ++VA 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSQGGQTLKSIGK--MMPPDDEVAE 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRFAER 310


>gi|189461555|ref|ZP_03010340.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136]
 gi|189431761|gb|EDV00746.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136]
          Length = 306

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 166/315 (52%), Gaps = 19/315 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+ +       H+PVLL + I  +N  P  +  D TFG GG+S+   +     S++ + D
Sbjct: 3   MNES---EQTYHIPVLLNESIDGMNLHPAGIYADMTFGGGGHSKEILRRMDKNSHLYSFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
           +D  A             +F+  ++ F  L +++        D ++ DLGVSS   D  +
Sbjct: 60  QDEDAEKN-----IVDDSRFTFVRSNFRYLHNFLRYYGVEEADAILADLGVSSHHFDDSE 114

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  G LDMRM+   G++A+D+VN    + L  +  + GE K + ++A  +VK R 
Sbjct: 115 RGFSFRFDGKLDMRMNKRAGMTAADIVNNYEEERLANVFYLYGELKNSRKLASVLVKARA 174

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                T  D   +I+    F K        + FQALRI VN E+E L + L +A +ALK 
Sbjct: 175 QKQIVTIGDFLEIIKP--LFGKEREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKP 232

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+++++HSLEDR+VK    + + +    +    +   P  F+++  KV+VP+ E++A
Sbjct: 233 GGRLVIITYHSLEDRIVKNLIKTGNVEGKVEQDFFGNVQTP--FRAVNNKVIVPSDEEIA 290

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 291 RNPRSRSAKLRIAEK 305


>gi|332292526|ref|YP_004431135.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170612|gb|AEE19867.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 301

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 17/309 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
           + +  H PVLL++ +  LN  P  V +D TFG GG+SR           +   D+D  A 
Sbjct: 2   YQMDYHNPVLLKETVDGLNIKPDGVYVDVTFGGGGHSREILSRLGPEGKLYGFDQDVDAQ 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E      E+F+L    F  ++ ++       VDG++ D GVSS Q D  +RGFS +
Sbjct: 62  ENIIE-----DERFTLIPENFRYIKRFMRFHGVKKVDGILGDFGVSSHQFDVAERGFSTR 116

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM+     SA +V+N    +DL ++    GE + A ++A  IV+ R S   +T
Sbjct: 117 FESDLDMRMNQKDTLSAYNVINDYEEEDLRQVFWQYGELRNAPKLASTIVQERNSQFIKT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           ++ L  ++   +   + ++I    + +QA+RI VN EIE L + L   E+ L  GG + +
Sbjct: 177 SEHLKKVLAPFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLMQTEQLLDTGGRISL 234

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDRLVK++  S   +    + M  +   P  F+ +  K+++P  +++  N R+R
Sbjct: 235 ISYHSLEDRLVKRYIRSGMFEGEPEKDMYGNFEVP--FKKV-GKLIIPDSKEIKLNNRAR 291

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 292 SAKLRIAEK 300


>gi|83595986|gb|ABC25345.1| S-adenosyl-methyltransferase [uncultured marine bacterium Ant29B7]
          Length = 304

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 148/309 (47%), Gaps = 16/309 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL+  I  L+  P  + +DATFG GG+SR+          +   D+DP     
Sbjct: 1   MTYHDPVLLDACIQHLHIQPHGIYVDATFGGGGHSRAILDQLGPEGKLFGFDQDPDTSKN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    ++F L    F  +           VDG++ DLGVSS Q+D G RGFSF++ 
Sbjct: 61  A-----PNDDRFQLLPFNFEHITRILRLHKVTAVDGILADLGVSSHQLDEGSRGFSFRQH 115

Query: 131 GPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+      +   +     + L + L   G+  QA R+A AI++ R +     T+
Sbjct: 116 AELDMRMNPQSGPGAREWLETVTWEQLAQTLREFGDVHQAGRVATAIIQARDAGQMTWTE 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL   +Q               + FQA+RI VN E+  L   L      LK GG  +V+S
Sbjct: 176 DLYECLQP--MCKGPRGKKLPAQVFQAIRIAVNRELAVLDSLLVDGANLLKTGGRYVVMS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR VK+FF     +  A R          +F  IT+K +V +QE++A N R+RSA
Sbjct: 234 YHSLEDRRVKRFFKEGVLEGEAARDDHGRRYE--IFDRITRKPLVASQEEIAINPRARSA 291

Query: 310 KLRAGMRTV 318
           KLR   +  
Sbjct: 292 KLRVVEKIE 300


>gi|296448271|ref|ZP_06890165.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b]
 gi|296254223|gb|EFH01356.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b]
          Length = 338

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 145/332 (43%), Positives = 195/332 (58%), Gaps = 9/332 (2%)

Query: 12  AIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPF 69
            +       H+PVLL++ +A L P  G V LDATFGAGGY+R+      + V+ALDRDP 
Sbjct: 2   TMPPEQPMRHIPVLLDEAMAALGPRSGGVYLDATFGAGGYTRALLAHENTRVLALDRDPR 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A+  G   +     + +L +A FS+L           +DG+V D+GVSSMQ D  +RGFS
Sbjct: 62  AIRDGAALVAAAGGRLTLVEARFSELAQVAGRTGLAPLDGIVADIGVSSMQFDEAERGFS 121

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  GPLDMRM  SG SA+D+V +A  + L  IL   GEE+ + RIA AIV  R     +
Sbjct: 122 FRNDGPLDMRMEGSGRSAADIVAEAEEEALADILYHYGEERASRRIARAIVHARLERKIE 181

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+++I++     +   IHPAT+SFQALRI VN+E+ EL   L  AE+ALK GG L+
Sbjct: 182 TTGALAAIIERAA-PGRPGEIHPATKSFQALRIAVNDELGELVAALAGAERALKPGGKLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNR 304
           +VSFHSLEDR+VK+F A RSG+       +P    P     I    K + P++ ++A N 
Sbjct: 241 IVSFHSLEDRIVKQFLAERSGRGETRSRRLPGEPVPPPPTFIVDDFKPLAPSEREIAANP 300

Query: 305 RSRSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           RSRSA+LR   RT        D+   L RLP 
Sbjct: 301 RSRSARLRVATRTDAPPRPVGDALARLARLPE 332


>gi|189501435|ref|YP_001960905.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1]
 gi|263445802|sp|B3EQC6|RSMH_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189496876|gb|ACE05424.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1]
          Length = 332

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 170/317 (53%), Gaps = 19/317 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDPF 69
             H+PV++ +V+A L      + +D T G GG+S +          + GS +I +D+D F
Sbjct: 5   AYHLPVMVREVVAWL-VRRAGIYVDGTLGGGGHSLAILRALRDKGLEKGSFLIGIDQDSF 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCG 121
           A++  + T+  ++E+  L Q  F ++ D V            V G++ DLGVSS QID  
Sbjct: 64  AIAEAERTLASFRERTRLVQGNFREIADIVSTLRENQLRGMEVAGILLDLGVSSFQIDTS 123

Query: 122 DRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+ +SGPLDMRM    G SA+D+VN    ++L  I    GEEK++ RIA AI   R
Sbjct: 124 ERGFSYLRSGPLDMRMEPDEGQSAADIVNTFEERELADIFFRFGEEKKSRRIASAICSWR 183

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                       + I ++V    + +I   +R FQALRI VN+E+  L   L+    +L 
Sbjct: 184 NERGVIRGTQDLAAIVRSVVSVPDQQIKSLSRIFQALRIAVNDELGALESALKEGAASLS 243

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299
             G + V+S+HS+EDR+VK +F + +      + + +    H A F  +T+K ++   ++
Sbjct: 244 PQGRMAVMSYHSIEDRMVKHYFRTLAADDWGPKGVALREPLHKAAFTLVTRKALIAGDDE 303

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N R+RSAK+R   R
Sbjct: 304 VNENSRARSAKMRVIER 320


>gi|291300155|ref|YP_003511433.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM
           44728]
 gi|290569375|gb|ADD42340.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM
           44728]
          Length = 336

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 118/327 (36%), Positives = 189/327 (57%), Gaps = 10/327 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IA 63
           M +        HVPV  E+V  LL P    P  V +DAT GAGG+S +  +   ++  I 
Sbjct: 1   MMTKYGAPDRAHVPVFAERVCQLLAPAFDRPDPVCVDATLGAGGHSLALLEAHPSLTVIG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +DRDP A+    + +  + ++F   +A + +L + + +     + G++FDLGVSSMQ+D 
Sbjct: 61  IDRDPDALELAGKRLARFGDRFRPARAVYDELDEVLDETGVDQISGILFDLGVSSMQLDV 120

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGF++ +  PLDMRM    G++A++VVN    +DL+RIL I GEE+ A RIA +IV +
Sbjct: 121 AERGFAYAQDAPLDMRMDQSQGMTAAEVVNSYAERDLSRILRIYGEERFAPRIAKSIVAQ 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+ AP +++++L+ L++  V   ++    +P+ R+FQALRI VN E++ L   L  A  A
Sbjct: 181 RKRAPIESSRELADLVRDAVPAATRRRGGNPSKRTFQALRIEVNRELDVLRDALPRAIDA 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G ++V+S+HSLEDR+VK+    R+         I         + +TK    P++ 
Sbjct: 241 LAPDGRIVVLSYHSLEDRIVKRELGERTKSSAPAGLPIDVPGTEPTLRWLTKGAQPPSEA 300

Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDD 325
           ++A N R+ SAKLRA  +   R+ + D
Sbjct: 301 EIAANPRAASAKLRAAQKLGGRNQDHD 327


>gi|332882630|ref|ZP_08450242.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679430|gb|EGJ52415.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 304

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 159/314 (50%), Gaps = 17/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +I  H+PVLL++ I  L   PG   +D TFG GG+SR           + A D+D  
Sbjct: 1   MSDSISYHIPVLLKQSIDGLAIKPGGTYVDVTFGGGGHSREILNRLGENGRLYAFDQDAD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   +       +F+L    F  L+ Y+       VDGV+ D GVSS Q D  +RGFS
Sbjct: 61  ALNNTID-----DPRFTLIHQNFKYLKQYLRFYGVSEVDGVLGDFGVSSHQFDVAERGFS 115

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+     +A  VVN+ +   LTRI  + GE K A  IA AI+  RQ  P 
Sbjct: 116 TRFEGALDMRMNQQSELTAQQVVNEYDEAALTRIFSLYGELKNARAIARAIIAFRQHTPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +    L   ++  +   K N+     + +Q++RI VN E+E L   L      +K GG +
Sbjct: 176 RLGSTLQEAVRAFLPKFKENK--VLAQIYQSIRIEVNAEMEVLESFLLQLPAVVKVGGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   +++P + ++  N R
Sbjct: 234 SLISYHSLEDRCVKRFIRDGQMEGAPEKDWYGNVSVP--FKKV-GGLILPDEAEITINNR 290

Query: 306 SRSAKLRAGMRTVE 319
           +RSAKLR   R  +
Sbjct: 291 ARSAKLRIAERIND 304


>gi|260910904|ref|ZP_05917546.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634961|gb|EEX53009.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 319

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 17/320 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           +  I    G HVPVLL + +  LN   G V +D TFG GG++          + + + D+
Sbjct: 3   NDNITTAQGYHVPVLLAESVDALNIFKGGVYVDVTFGGGGHTCHILSKMDATARLFSFDQ 62

Query: 67  DPFAVSCGQETMRD------YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQ 117
           D  A    +    +         +F+  ++ F  L +++   GV+    ++ DLGVSS  
Sbjct: 63  DADAEENTRREGSEGQSPLANDNRFTFVRSNFRYLDNWMRYYGVEHVDGILADLGVSSHH 122

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFSF+   PLDMRM+ +   +A+ V+N  + + L  +  + GE +Q+ RIA AI
Sbjct: 123 FDDQERGFSFRFDAPLDMRMNKNATLTAAQVLNTYDEEKLADVFFLYGEIRQSRRIASAI 182

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           VK R  A   TTQ+ +++++      +  +     + FQALRI VNNE++ L + L++A 
Sbjct: 183 VKARAKAAVHTTQEFAAIVEPFFKLEREKK--EMAKLFQALRIEVNNEMDALKEMLQAAS 240

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L  GG L V+++HSLEDR+VK F  + + +    +        P  F  +  KV+VPT
Sbjct: 241 EWLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPT 298

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            ++   N RSRSAKLR   +
Sbjct: 299 ADEQLRNPRSRSAKLRIAEK 318


>gi|218437172|ref|YP_002375501.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424]
 gi|263447401|sp|B7K9F0|RSMH_CYAP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218169900|gb|ACK68633.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424]
          Length = 299

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 25/316 (7%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62
           S     S ++     H+PVL +++I  L+  PG   LDAT G GG+SR   +      V 
Sbjct: 2   SKVLQMSTVNSLAFIHIPVLTQELIKGLDICPGGHYLDATVGGGGHSRQILETYGDVQVT 61

Query: 63  ALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           A+DRD  A++     + DY  ++ + +   F+       +   DG++ DLGVSS Q+D  
Sbjct: 62  AIDRDEVAIAAATTNLADYNTDRLTFWTGNFADYD--PGNLKFDGIIADLGVSSPQLDSP 119

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF+   PLDMRM      +A+D++N  +  +L  +    GEE+ + +IA  IVK  
Sbjct: 120 ERGFSFRLDAPLDMRMDRRQSTTAADIINSYSEIELANLFYNYGEERLSRQIAKQIVK-- 177

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q   F TT+    + +      +  RIHPATR FQ LRI VN E++ L   L  +   LK
Sbjct: 178 QRPFFSTTELAEVISRSVPPKYRYGRIHPATRVFQGLRIAVNQELDSLESFLAKSPSWLK 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G++ ++SFHSLEDR+VK    +                   + + +TKK ++P  ++ 
Sbjct: 238 TNGIIGIISFHSLEDRIVKHQLRAS-----------------PLLKVLTKKPIIPQSDEQ 280

Query: 301 AFNRRSRSAKLRAGMR 316
           A N RSRSAKLR   R
Sbjct: 281 AKNPRSRSAKLRLAQR 296


>gi|34556618|ref|NP_906433.1| S-adenosyl-methyltransferase MraW [Wolinella succinogenes DSM 1740]
 gi|42559439|sp|Q7MSS6|RSMH_WOLSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34482332|emb|CAE09333.1| conserved hypothetical protein CJ0693C [Wolinella succinogenes]
          Length = 303

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/304 (32%), Positives = 160/304 (52%), Gaps = 8/304 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H+ VL  +V+ +  P      +D T G GG+S +  K      +I +D+DP A+  
Sbjct: 1   MESPHLSVLKNEVLEIFAPLSEGYFIDCTLGFGGHSEAILKAHPKLSLIGIDQDPHALEF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q+ +  +K++FS  +  FS++   + +  + G++ D+GVSS+Q+D   RGFSF      
Sbjct: 61  SQKRLAPFKDRFSFREGRFSEVLPTLKELPIAGILADIGVSSLQLDDSSRGFSFHSERLD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
                 + +SA +VVN      L RI    GE K++ ++   I + R+     + + LS 
Sbjct: 121 MRMNPNAQLSALEVVNSYPQDRLERIFKEYGEIKESKKLVSLISEERKKGRITSAEALSR 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI++  +F +   IHPAT +FQA+RI VN+E+ E+ + L++  +     G + ++SFHSL
Sbjct: 181 LIER--HFKRVGNIHPATLAFQAIRIEVNDELGEIGRALQTIGEIA--KGRVSIISFHSL 236

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDRLVK FF   S   +            +    Q +TKK +V T E+   N RSRSAK+
Sbjct: 237 EDRLVKNFFKEWSNSCLCPPEAFRCTCGNNHEKGQILTKKPLVATPEESKANPRSRSAKM 296

Query: 312 RAGM 315
           RA  
Sbjct: 297 RAFE 300


>gi|139473295|ref|YP_001128010.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str.
           Manfredo]
 gi|54037825|sp|P65432|RSMH_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54037826|sp|P65433|RSMH_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041488|sp|P65431|RSMH_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909223|sp|Q48RZ0|RSMH_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826830|sp|A2RD40|RSMH_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831446|sp|Q1JAG5|RSMH_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831450|sp|Q1JKL7|RSMH_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831454|sp|Q1JFK8|RSMH_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134271541|emb|CAM29765.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str.
           Manfredo]
          Length = 316

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  ++  N+R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHSELTANKRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|238019059|ref|ZP_04599485.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748]
 gi|237864314|gb|EEP65604.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748]
          Length = 310

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 157/309 (50%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72
              +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S
Sbjct: 1   MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D   Q       FS L++ + +     VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  VARQRLSDLTCQVLTIPTNFSNLKEALHNEGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     ++A +VVN+ +   L +I+   GEE+ A RI   I+  RQ     TT
Sbjct: 121 DGPLDMRMDKDAPLTAEEVVNEYDADALLQIIRDYGEERWAKRIVEFIINARQEKRITTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 181 GELVRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     +         K + P+  ++  N R+R
Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPELPMCVCNHKAVVKAKNKAIEPSAGEIEVNPRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 301 SAKLRVAVK 309


>gi|262831458|sp|Q1J5F8|RSMH_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  ++  N+R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSRKPILPSHSELTANKRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|167035511|ref|YP_001670742.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1]
 gi|262825111|sp|B0KFT4|RSMH_PSEPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166861999|gb|ABZ00407.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1]
          Length = 315

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G+     GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPGQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F      G+   +   +P          + I  K    ++ ++  N RSR
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLI-GKAQFASEAELKANPRSR 304

Query: 308 SAKLRAGMR 316
           SA +R   +
Sbjct: 305 SAVMRVAEK 313


>gi|325275020|ref|ZP_08141013.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51]
 gi|324099848|gb|EGB97701.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51]
          Length = 315

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G+     GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G+SA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F      G+   +   +P          + I  K    ++ ++  N RSR
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKVKLI-GKAQFASEAELKANPRSR 304

Query: 308 SAKLRAGMR 316
           SA +R   +
Sbjct: 305 SAVMRVAEK 313


>gi|229815097|ref|ZP_04445434.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM
           13280]
 gi|229809327|gb|EEP45092.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM
           13280]
          Length = 325

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L++V+  L   PG V+ D T G  G+S    +   +   ++ +D+D  A++   +
Sbjct: 16  HEPVMLQEVLEQLQLKPGSVVCDCTLGGAGHSVRMAERVGSEGLLLGVDQDDMALAAAGK 75

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            +          L +  F  L + +    V G    +FDLGVSS Q+D   RGFS+ +  
Sbjct: 76  RLDAEAPDTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDA 135

Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTT 188
           PLDMRM     +   ++V+N     DL RIL I GEEK A +IA  +  +R++S    T 
Sbjct: 136 PLDMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREVVRRRQESPLVSTG 195

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             + ++       ++ +  HPA RSFQA+RI VN+E++ L +GL +A + L  GG + V+
Sbjct: 196 DFVDAIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAIRWLNPGGRVCVI 255

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK+ F   S        +      +  + +  T+K +V T E+V  N R+R
Sbjct: 256 SYHSLEDRIVKRLFQELSKGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVERNPRAR 315

Query: 308 SAKLRAGMR 316
           SAK+R   R
Sbjct: 316 SAKIRCAER 324


>gi|260893420|ref|YP_003239517.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4]
 gi|260865561|gb|ACX52667.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4]
          Length = 291

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 171/306 (55%), Gaps = 26/306 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           ++++V+A L   PG V +D T G GG++ +          +I LDRDP A+S  ++ +  
Sbjct: 1   MVKEVLAYLAVKPGGVYVDCTVGGGGHAAAILAFIGDEGRLIGLDRDPEALSFARKRL-G 59

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              +  L  A+F+ L + +     +GVDGV++DLGVSS Q+D  +RGF++++  PLDMR 
Sbjct: 60  NDPRVHLVHASFADLAEVLAGLGVRGVDGVLYDLGVSSYQLDRPERGFTYREDAPLDMRF 119

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S   +A+D+VN+   K+L  I+   GEE+ A RIA  IV+ R   P  TT  L  +I+
Sbjct: 120 DPSSPVTAADLVNRLEEKELACIIREFGEERWAKRIARFIVRARARRPILTTGQLVEIIK 179

Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +   ++    HPA R+FQALRI VN E+E L   L  A   LK GG L+V+S+HSLED
Sbjct: 180 EAIPASARRRGPHPARRTFQALRIAVNRELEALKASLPQAADCLKPGGRLVVLSYHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK FF   +                   + +TKK + P+ E+V  N R+ S KLRA  
Sbjct: 240 RLVKGFFRQYT-----------------CLRPLTKKPLTPSPEEVKQNPRASSCKLRAAE 282

Query: 316 RTVERS 321
           + +   
Sbjct: 283 KILNPE 288


>gi|320535363|ref|ZP_08035477.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421]
 gi|320147765|gb|EFW39267.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421]
          Length = 317

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 163/306 (53%), Gaps = 8/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLL++ ++LL PA      +D T G GG++ +F K    +  I +D DP   +  + 
Sbjct: 5   HKSVLLQESLSLLKPASEDTLFVDGTLGEGGHTEAFLKTYPQLSAIGIDADPTIQAKAKL 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++ +  +   F                  + ++FDLG+S        RGFSFQ   PLD
Sbjct: 65  RLQPFASRVQYFSGWSDDFFKNYSTEYPKPNIILFDLGISMFHYIESGRGFSFQAEEPLD 124

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++  + +SA++++N    ++L  I    GEE+ + +IA AI  RR+   F+T  DL+ 
Sbjct: 125 MRINPATSLSAAEIINTYKEEELASIFYTYGEERFSRKIAGAICLRRKEQEFKTAGDLAE 184

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I K V    ++ RIHPATRSFQALRI VN E++ L   L+ A + L   G L V+SFHS
Sbjct: 185 VIFKAVPPAYRHGRIHPATRSFQALRIKVNGELDRLPDLLKLAFQRLALNGKLGVISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK++F   +        M         + Q +T K V+PT E++  N  SRSAKL
Sbjct: 245 LEDRIVKRYFRDLAKNCRCPPEMPICKCGGRPLAQLLTGKPVIPTDEEIRVNPASRSAKL 304

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 305 RAVKKI 310


>gi|282889763|ref|ZP_06298302.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500337|gb|EFB42617.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 310

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VL+++VI   +P   ++ +D T GAGG+S +          +IA+D+DP A++   E
Sbjct: 5   HQSVLMKEVIESFSPCSLRIFIDGTAGAGGHSAALLATHPEIERLIAIDQDPLALTVAAE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+ +     F  L+ ++       VDG++ DLGVSSMQ+D  ++GFSF K GPL
Sbjct: 65  NLAPWSEKVTFVSGNFENLEKFLDQLEISTVDGILLDLGVSSMQLDIAEKGFSFSKEGPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A+ VVN    K+L RI    GEE+     A AIV+ R      TTQ L 
Sbjct: 125 DMRMDPRNPLTAAIVVNTWPQKELERIFRDYGEERHWRAAARAIVQARAEKQILTTQQLV 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++  + F+   RIHP T  FQALRI VN E++ + + + +A + LK GG L ++SFHS
Sbjct: 185 EVLRPVLRFNPAKRIHPCTLVFQALRICVNKELDVVERVIPAAIRRLKKGGRLGIISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LED +VK  F   +      R +           + +T+K +V   E+VA N RSRSAKL
Sbjct: 245 LEDGIVKNLFRHAASDKWDTRGLAGLFRDKDPEVRLLTRKPLVANDEEVAANPRSRSAKL 304

Query: 312 RAGMR 316
           R   +
Sbjct: 305 RVLEK 309


>gi|170720122|ref|YP_001747810.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619]
 gi|262825121|sp|B1J1Y2|RSMH_PSEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169758125|gb|ACA71441.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619]
          Length = 315

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAERGLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIRLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|242238092|ref|YP_002986273.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703]
 gi|263446348|sp|C6C9K0|RSMH_DICDC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|242130149|gb|ACS84451.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703]
          Length = 313

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 173/314 (55%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP AVS
Sbjct: 3   ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGTDGQLLAIDRDPQAVS 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                   +  +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AASAI---HDARFSIIHGPFSSLADYVAERGLVGRIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G+SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPSRGVSAAEWLMNAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       +    HPATRSFQA+RI++N+E++E+ + L  A + L   G L V
Sbjct: 180 TKALAELI-AAACPIREKHKHPATRSFQAIRIYINSELDEIERALEGALQVLAPHGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  + A          +++ K  ++P++ +V  
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLKSQGGRTLKAVGK--MMPSESEVGE 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRFAER 310


>gi|298372234|ref|ZP_06982224.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275138|gb|EFI16689.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 297

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 161/306 (52%), Gaps = 17/306 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVPVLLE+ I  L   P  V +D TFG GG+SR+          +   D+D  A     
Sbjct: 2   YHVPVLLEESIECLRIKPDGVYVDCTFGGGGHSRAILARLGNKGKLYGFDQDREAYRNTT 61

Query: 76  ETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +      E+F+  +  F   S    Y  +  VDG++ DLGVSS   D  +RGFS++  G 
Sbjct: 62  D-----DERFTFVRGNFKYISNFLRYYGEDKVDGILADLGVSSHHFDEAERGFSYRFDGT 116

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     +A +++N  + + L  IL + GE + A RIA+AIV RRQ+   +T  +L
Sbjct: 117 LDMRMNREASFTAEELINGYDEQALADILYLYGELRNARRIANAIVCRRQTKAIKTIFEL 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++   + +K          FQA+RI VN E++ L   L  +   L++GG + V+S+H
Sbjct: 177 TEVLRP--FCTKGKEYKELAPIFQAIRIEVNAELDSLKTLLCRSVDLLRSGGRIAVISYH 234

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + +      +    +   P  F +++ K +V    ++A N R+RSA+L
Sbjct: 235 SLEDRLVKNFLKTGNFGGEPQKDFYGNQITP--FANVS-KAIVSNDREIADNPRARSARL 291

Query: 312 RAGMRT 317
           R   + 
Sbjct: 292 RYAEKI 297


>gi|327313078|ref|YP_004328515.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289]
 gi|326945605|gb|AEA21490.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289]
          Length = 314

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 16/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M+         HVPVLL + I  LN   G + +D TFG GG+SR      + GS++ + D
Sbjct: 1   MTRT---AETYHVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFD 57

Query: 66  RDPFAVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDC 120
           +D  A           +  ++F+  ++ F  L++++    V  +   + DLGVSS   D 
Sbjct: 58  QDADAEQNIGRMGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSF+   PLDMRM+   G++A+D++N+ + + L  IL + GE KQ+ RIA AIVK 
Sbjct: 118 ETRGFSFRFEAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKG 177

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+   ++TT DL  +     +F +        + FQALRI VN E++ L + L +A   L
Sbjct: 178 REQKAYKTTNDLLVITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLL 235

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG L V+++HSLEDR+VK    S + +    +        P  F+ +  KV+    ++
Sbjct: 236 SPGGRLSVITYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDE 293

Query: 300 VAFNRRSRSAKLRAGMRTVER 320
              N RSRSAKLR   +  + 
Sbjct: 294 QERNPRSRSAKLRIAEKKSDE 314


>gi|268680046|ref|YP_003304477.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618077|gb|ACZ12442.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM
           6946]
          Length = 304

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVLLE+V A  +     VI+D T G GG+S +  +      +I  D+D  A++  ++
Sbjct: 4   PHIPVLLEEVKAAFSNISDGVIIDCTLGYGGHSEALLEQNPHIRLIGCDQDEEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  + E+       F+ +        + G++ D+GVSS+Q+D  +RGF+F         
Sbjct: 64  RLERFGERVMFHHGNFASVIAQYAHLPIRGILADIGVSSLQLDKKERGFAFDSEVLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA +VVN    + L  I    GE     ++A  + + R  AP Q+ ++LS L Q
Sbjct: 124 NPHQSLSAYEVVNHYTKEQLEFIFREYGEIHAYQKMAQLMCEARLKAPIQSAKELSFLAQ 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K         IHPAT  FQA+RI VNNE+  L Q L S + A     ++ ++SFHSLEDR
Sbjct: 184 K---IPGKKSIHPATLLFQAIRIEVNNELGVLTQLLESIQNAGFTQCIVGIISFHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK+ F   S   +   H+       + A+ + I+KK +  +  ++  N RSRSA+LR  
Sbjct: 241 IVKQTFKFWSQNCICPPHVMRCMCGNNHALGKIISKKPIEASPLELKKNPRSRSARLRVF 300

Query: 315 MRTV 318
            +  
Sbjct: 301 -KIE 303


>gi|257483456|ref|ZP_05637497.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289624974|ref|ZP_06457928.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647032|ref|ZP_06478375.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488527|ref|ZP_07006557.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156868|gb|EFH97958.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868707|gb|EGH03416.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987126|gb|EGH85229.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011570|gb|EGH91626.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 313

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|110639131|ref|YP_679340.1| S-adenosyl-methyltransferase MraW [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966614|sp|Q11RG6|RSMH_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110281812|gb|ABG59998.1| S-adenosylmethionine methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 298

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
            HVPVLL++ +  LN  P  + +D TFG GG+SR   K   G  + A D+D  AV   ++
Sbjct: 2   YHVPVLLKESVEGLNINPEGIYVDVTFGGGGHSREILKHLKGGKLYAFDQDADAVDNAKD 61

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      F+L  A F  ++ Y        VDG++ DLG+SS QID  +RGFS +   PL
Sbjct: 62  LI---GPNFTLIPANFRYIKKYLRLNGVDKVDGLLGDLGISSHQIDTPERGFSIRYDAPL 118

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   +A+D++N+ +   L  ILG+ GE + A  +A A+VK R + P   T +L 
Sbjct: 119 DMRMDRAIDKTAADIINKYSEHGLHSILGMYGEVRNAKTLAQALVKERINKPINRTSELI 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++       K ++     + FQALRI VN E+E L   L  +++ LK+GG L ++S+HS
Sbjct: 179 EVLSDYAPRGKESK--YYAQVFQALRIEVNEELEALKDLLEQSQQVLKSGGRLSIISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F         A + +  +   P  F+S+  K + P  E+   N R+RSA+LR
Sbjct: 237 LEDRLVKNFVQQGKFHGDAEKDLYGNTNKP--FKSV-GKAIDPDDEEKERNNRARSARLR 293

Query: 313 AGMR 316
              R
Sbjct: 294 IAER 297


>gi|325856519|ref|ZP_08172208.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A]
 gi|325483488|gb|EGC86461.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A]
          Length = 314

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 169/321 (52%), Gaps = 16/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M+         HVPVLL + I  LN   G + +D TFG GG+SR      + GS++ + D
Sbjct: 1   MTRT---AETYHVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFD 57

Query: 66  RDPFAVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDC 120
           +D  A           +  ++F+  ++ F  L++++    V  +   + DLGVSS   D 
Sbjct: 58  QDADAEQNIGRMGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSF+   PLDMRM+   G++A+D++N+ + + L  IL + GE KQ+ RIA AIVK 
Sbjct: 118 ETRGFSFRFEAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKG 177

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+   ++TT DL ++     +F +        + FQALRI VN E++ L + L +A   L
Sbjct: 178 REQKAYKTTNDLLAITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLL 235

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG L V+++HSLEDR+VK    S + +    +        P  F+ +  KV+    ++
Sbjct: 236 SPGGRLSVITYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDE 293

Query: 300 VAFNRRSRSAKLRAGMRTVER 320
              N RSRSAKLR   +  + 
Sbjct: 294 QERNPRSRSAKLRIAEKKSDE 314


>gi|328955350|ref|YP_004372683.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2]
 gi|328455674|gb|AEB06868.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2]
          Length = 321

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 175/320 (54%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++        H PV++ +V+  L P    VI+D T G  G++    +       +I +D
Sbjct: 1   MANGTLTPEYQHEPVMVAEVLEALRPEESSVIVDCTLGGAGHAVRLAREMGPEGQLIGID 60

Query: 66  RDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +D  A++     +          L +  F  L + +      GVDG +FDLGVSS Q+D 
Sbjct: 61  QDDMALNSAAARLDREVPGVAHRLMKGNFRDLDELLCAAEVPGVDGFLFDLGVSSPQLDI 120

Query: 121 GDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFS+ +  PLDMRM     G SA+DVVN  +  +L RIL   GEE+ A  IA  IV+
Sbjct: 121 PNRGFSYHEDAPLDMRMDPQSGGPSAADVVNGYSEAELIRILHAFGEERFAGAIAREIVR 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           RR++ P  TT +L  +I+  +  + +    HPA RSFQA+RI VN+E++ L  GL++A +
Sbjct: 181 RRKTKPISTTTELVEVIKAAIPAAARRQGPHPARRSFQAIRIEVNHELDALLIGLQAALR 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296
            L   G + V+S+HSLEDR+VK+ F S S        +      +  + + ITKK +V T
Sbjct: 241 WLNPAGRICVISYHSLEDRIVKRLFQSASRGCTCPPDIPVCVCGNVPILKVITKKPLVAT 300

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            E+V  N RSRSAK+R  M+
Sbjct: 301 TEEVERNPRSRSAKIRVAMK 320


>gi|170078284|ref|YP_001734922.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002]
 gi|262825754|sp|B1XP73|RSMH_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169885953|gb|ACA99666.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002]
          Length = 290

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 24/300 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+ VL E+++A L   P    LD T G GG++    +      V  +DRD  A++   E
Sbjct: 6   KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ + ++F   ++ F + Q        DG++ DLGVSS+Q D GDRGFSF+   PLDMR
Sbjct: 66  RLKSFGDRFRAVRSNFGEYQPQGEK--FDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123

Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M      +A+D+VN    K L  +    G+E+ + +IA  IV   +     T +    + 
Sbjct: 124 MDQQQTLTAADIVNTYEEKALANLFYEYGDERLSRQIAKKIV--MKRPIQTTKELEEIVF 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 ++  +IHPATR FQALRI VN E++ L   L +A + LK  G L ++SFHSLED
Sbjct: 182 YTYHPKARKVKIHPATRVFQALRIAVNGELDALQYLLVNAPQWLKPQGRLGIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK  F  R                  +++ +TKK +V ++ ++  N R+RSAKLR   
Sbjct: 242 RLVKNAFRQRD-----------------IWRILTKKPMVASETEINQNPRARSAKLRFAE 284


>gi|311748596|ref|ZP_07722381.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1]
 gi|126577120|gb|EAZ81368.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1]
          Length = 303

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 15/308 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H+PV+L +    L   P  + +D TFG GG+SR   K     ++   D+D  A++ 
Sbjct: 3   ESVYHIPVMLPQCTEGLAIDPNGIYVDVTFGGGGHSREILKHLDKGHLYGFDQDEDAIAN 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    E F+  QA F  L+ Y      K VDG++ DLG+SS QID   RGFS + S
Sbjct: 63  -----IPESENFTFVQANFRDLKRYLRLHGVKKVDGILADLGISSHQIDEPSRGFSTRFS 117

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           G LDMRM+ S  +SA +V+N      L ++ GI GE + A  +A A+V  R + PF+TT+
Sbjct: 118 GDLDMRMNQSAELSAKEVLNTYEAHQLHKVFGIYGEIRNAKTLAQAVVSERAAQPFETTE 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             ++ ++K     K+ +     + FQALRI VN+E+  L + L  +   LK  G L+V+S
Sbjct: 178 GFTAFLKKYAPRGKDFK--YYAQVFQALRIEVNDEMGALEEMLLDSVDLLKPEGRLVVMS 235

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK        +    +    +   P   + +T+K V+  +E+VA N R+RSA
Sbjct: 236 YHSLEDRLVKNLIQKGKFQGEVEKDFYGNMIRP--LEPVTRKAVIADEEEVARNPRARSA 293

Query: 310 KLRAGMRT 317
           KLR   +T
Sbjct: 294 KLRVAKKT 301


>gi|42526707|ref|NP_971805.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405]
 gi|85701364|sp|P62477|RSMH_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|41817022|gb|AAS11716.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405]
          Length = 315

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 8/307 (2%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLLE+ +  L P A   + +D T G GG++ +F K    +  I +D D       +E
Sbjct: 5   HTSVLLEECLEFLKPDASDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++ + E+         +     P      + ++ DLG+S        RGFSF    PLD
Sbjct: 65  RLKPFGERIRFHLGWSDEFFKNYPKDFAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    +SA+D+VN  N KDL  ++   GEE+ + +IA  IV++R +A F   ++L+ 
Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSNAKELAD 184

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I K V    ++ +IHPAT++FQALRI VN E++ L + L +A   L   G L +++FHS
Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK +F           +M           + +TKK V  + E++  N  SRSA+L
Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304

Query: 312 RAGMRTV 318
           R   +  
Sbjct: 305 RVVRKID 311


>gi|206889537|ref|YP_002249141.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|262825898|sp|B5YFU3|RSMH_THEYD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206741475|gb|ACI20532.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 292

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 26/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PV++++VI LLNP  G + +DAT G GG+S +  K       +I +DRD  A+     
Sbjct: 7   HIPVMVKEVIQLLNP-YGGIYVDATLGCGGHSLAILKRLSPDGRLIGIDRDESAIFYANR 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +    L +A+FS L++ + +   + +DG++FDLGVS +Q+   +RGFSF     L
Sbjct: 66  ILDDSR--VILRKASFSHLKEVLSELNIEKIDGIIFDLGVSMLQLKDFERGFSFHSEERL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   +A DVVN+   + LT+I    G+E  A RIA  I+++R      T ++L+
Sbjct: 124 DMRMDQTEPLTAWDVVNKYPEQKLTQIFRDYGDEPFARRIAREIIRQRGKKTIDTCKELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++KTV   ++ R+HPAT+ FQA+RI VN E EEL QGL  A + L +GG + V+S+HS
Sbjct: 184 DLVKKTVP--RHGRLHPATQIFQAIRIEVNREFEELRQGLLQAVELLNSGGRICVISYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR+VK FF                       + +TKK ++P+ E+VA N  +RSA+LR
Sbjct: 242 GEDRVVKNFFRE--------------EEQKGNLRILTKKPLLPSLEEVAKNPSARSARLR 287

Query: 313 AGMRT 317
            G + 
Sbjct: 288 GGEKI 292


>gi|172035001|ref|YP_001801502.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. ATCC 51142]
 gi|263446171|sp|B1WZ70|RSMH_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171696455|gb|ACB49436.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 315

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 162/324 (50%), Gaps = 29/324 (8%)

Query: 1   MESKSCKTMSSAIHHTIGD----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK 56
           + S +   M++  H    +    H PVL ++VI  L   P    LDAT G GG+SR   +
Sbjct: 10  LSSVTLIVMTNTDHPNQPNPPHLHTPVLCQEVIDGLAIEPNGHYLDATLGRGGHSRLILE 69

Query: 57  MGS--NVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 V  +D D  A++  QE      + +  ++Q  F+     + +   +G++ DLGV
Sbjct: 70  AFPDVRVTGIDLDEEAIAITQENFSLMGDKRLQVWQGNFADYPGEIGE--FNGIIADLGV 127

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           SS Q D  +RGFSF+   PLDMRM+    ++A +++N  +   L  +    GEE+++  I
Sbjct: 128 SSPQFDVPERGFSFRHQAPLDMRMNREQSLTAGEIINHWDQTSLADLFYQYGEERRSRAI 187

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           A  +V+  Q     TT+   ++ +      +  RIHPATR FQALRI VN+E+  L + L
Sbjct: 188 ARRLVQ--QRPFETTTELAEAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFL 245

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             A   LK GG + ++SFHSLEDR VK  F                     +   ITKK 
Sbjct: 246 EKAPHWLKPGGRIGIISFHSLEDRRVKYSFRDSL-----------------LLDVITKKP 288

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           ++P  E+   N RSRSAKLR   R
Sbjct: 289 IIPQPEEEEKNPRSRSAKLRFAQR 312


>gi|238026124|ref|YP_002910355.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1]
 gi|237875318|gb|ACR27651.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1]
          Length = 313

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 180/316 (56%), Gaps = 19/316 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H  VLL++ +  L   P  V +D TFG GG+SR+       G  +IA D+DP A++
Sbjct: 3   TEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPLAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q+       +FS+   +F+ L   + ++    V GV+ DLGVSS QID  +RGFSF+ 
Sbjct: 63  TAQQIA---DPRFSIVHDSFASLGGALAERGVARVTGVLLDLGVSSPQIDDPERGFSFRA 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----P 184
           +GPLDMRM    G SA+D + +A++++LT ++   GEE+ A +IA A+V RR+ +    P
Sbjct: 120 NGPLDMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARREESDRLGP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+ ++   V  ++     PATR+FQA+RI VN E+ +L   L +A  +L+ GG 
Sbjct: 180 LDSTGELAQIVGHAV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLGAALSSLEQGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAF 302
           L+V+SFHSLEDR+VK+F  + +      R +     +      + + +K   P+  +V  
Sbjct: 239 LVVISFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGRKF--PSDAEVDA 296

Query: 303 NRRSRSAKLRAGMRTV 318
           N R+RSA +R   R  
Sbjct: 297 NPRARSAVMRIAERVA 312


>gi|152990774|ref|YP_001356496.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2]
 gi|262824663|sp|A6Q3T0|RSMH_NITSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151422635|dbj|BAF70139.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2]
          Length = 302

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 156/305 (51%), Gaps = 11/305 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               H PVLL +V+          I+DAT G GG+S +  K      ++ +D+D  A++ 
Sbjct: 1   MNAPHKPVLLNEVLESFKDRK-GTIVDATLGYGGHSEALLKSNPDIKIVGIDQDSEAIAF 59

Query: 74  GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++ +  Y ++  + Q  F+  ++D +    V GV+ D+GVSS+Q+D  DRGFS      
Sbjct: 60  SKQRLASYGDRVQIIQGRFADVIEDILQTHDVQGVLADIGVSSLQLDKKDRGFSIHSENL 119

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                  + +SA  VVN  + ++L RI    GE + + ++A AI+  R         +++
Sbjct: 120 DMRMDQNAELSAYHVVNTYDEEELKRIFKEYGEIRHSGKLAKAIIHNRPIQSATQLAEIA 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
                     KN R+HPAT  FQA+RI VN E+++L   L + E+    G  + +++FHS
Sbjct: 180 Q-----KILPKNKRVHPATTLFQAIRIEVNKELDQLKGLLDALERHKPKGAKVAIITFHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ F   +   +           A+ A+   +TKK +V + +++  N R+RSAK
Sbjct: 235 LEDRIVKQHFKEWAKSCICPPEAMRCTCGANHALGNIVTKKPIVASIDELEENPRARSAK 294

Query: 311 LRAGM 315
           LR   
Sbjct: 295 LRVFQ 299


>gi|313500445|gb|ADR61811.1| MraW [Pseudomonas putida BIRD-1]
          Length = 315

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G+     GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKAFEPKIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|221065130|ref|ZP_03541235.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1]
 gi|220710153|gb|EED65521.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1]
          Length = 309

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL++ +  L       P    +DATFG GG+SR   +       +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAEPPAGQWVDATFGRGGHSRLILRRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +   +  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  EAARI---TDARFSIRHEGFRHLSELP-EGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+S     T   
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SFH
Sbjct: 183 LAQLVAGAVKTREAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P+  +VA N RSRSA +
Sbjct: 243 SLEDRIVKQFIAKHSKEV-YDRRAPFAPPTPMRLKALER--IKPSAAEVAANPRSRSAVM 299

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 300 RVAERTEVPA 309


>gi|257791849|ref|YP_003182455.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243]
 gi|257475746|gb|ACV56066.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243]
          Length = 318

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S         G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARR 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D + +  L +  F  + + +    V     V+FDLGVSS+QID   RGFSF++
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126

Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +GPLDMRM     +   ++++N     DLTRI+    +EK ASRIA   V+ RQ+AP +T
Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQTAPIET 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           ++ L  +I+  +  S +    HPA R+FQALRI VN E++ L  GL +A + L  GG L+
Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ FA  + +      +         +   +T+K V+PT E++  N R
Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAQK 317


>gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
 gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
          Length = 322

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 129/323 (39%), Positives = 186/323 (57%), Gaps = 8/323 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG 74
               H+PVLL  ++  + P      +D TFGAGGY+R   + G+  VI +DRDP      
Sbjct: 2   AEAPHIPVLLGPLLRAVAPVE-GTWVDGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +    +Y ++  L + TFS L        VDGVV DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 61  EAWAGEYGDRLRLVEGTFSDLDSLAG-GPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLD 119

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G +A++++N A  + +  +L + GEE+ + RIA AIV  R   P   T  LS +
Sbjct: 120 MRMGGDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAAR---PLSRTGQLSDI 176

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   +   K  + HP+TR+FQA+RI+VN+E  +L  GL +AE+AL+ GG L VVSFHSLE
Sbjct: 177 VSACLPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLE 236

Query: 255 DRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F  +RS       R+   +      F    ++ + P + ++A N R+RSA LR 
Sbjct: 237 DRIVKRFMQARSNSAGGGSRYAPEAAREEPAFTLPFRRAIGPDEAELATNPRARSALLRV 296

Query: 314 GMRTVERSIE-DDSFVHLPRLPT 335
           G+RT   +   D + + LP L  
Sbjct: 297 GIRTEAPAGRVDPAALGLPLLSE 319


>gi|320530962|ref|ZP_08031995.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399]
 gi|320136827|gb|EFW28776.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399]
          Length = 310

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 153/306 (50%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HV VL  + +A L+  P    +D T GA G++            +I +D+D  A++  Q 
Sbjct: 5   HVSVLPAETVAALSVVPEGTYVDCTLGAAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + SL    F  L   +  +    VDG++FDLGVSS QID   RGFS+ +  PL
Sbjct: 65  RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA  VVN+ +   LT +    GEE+ A RIA  I   R+  P +TT +L 
Sbjct: 125 DMRMDRRAARSAYTVVNEYSAARLTELFYDYGEERWAKRIAAFIEAARKERPIETTGELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I + V    +    HPA R FQA+RI VN E+  L   + +A   LK GG + V++FH
Sbjct: 185 EIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILPDAVTAAVHTLKPGGRIAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+     +   +   H  +    H    + I  K    +  + A N R++SAK
Sbjct: 245 SLEDRIVKRTMQQLARGCICPPHTPVCICGHTPELRLI-GKAQTASLAECAANARAKSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRVAEK 309


>gi|50086346|ref|YP_047856.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. ADP1]
 gi|54036183|sp|Q6F7D1|RSMH_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49532322|emb|CAG70034.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ADP1]
          Length = 303

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 162/306 (52%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           H+ VLL + +  L       + +D TFG GG++R           V   D+DP A++   
Sbjct: 3   HISVLLHETVDALLANRDTGIYIDGTFGRGGHTRLLLSKLGSDAQVYGFDKDPQALAVAH 62

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ +Q   +      V+GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  Q-LEQEDLRFKIIHASFADIQTELEQRGITQVEGVMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ +     + L  I+   GEE+ + RIA AI +       +TT  L
Sbjct: 122 LDMRMDNSQGKTAAEWLLSIEEEALANIIYQYGEERYSRRIARAIKQA---GALETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V++FH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEIFLPQAVTLLKPEGRLAVITFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P     +   + I++  +  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLPEDSGWGLPQKQVDSRRLKKISR--IRASEEEVKANPRSRSAW 295

Query: 311 LRAGMR 316
           LR   R
Sbjct: 296 LRVAER 301


>gi|303246299|ref|ZP_07332579.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ]
 gi|302492362|gb|EFL52234.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ]
          Length = 326

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 121/323 (37%), Positives = 175/323 (54%), Gaps = 11/323 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
             +  H+PVLL++V+  L   PG  ILDAT G GG+ +   +       V+ LDRD  A+
Sbjct: 2   QHVPTHIPVLLKEVVEYLGIRPGMKILDATAGLGGHIKGMLEAAGGQAEVLGLDRDREAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  Y ++  L +  +S+    + +   + VD  + D G+SS+Q+D  +RGF F 
Sbjct: 62  EEAGRRLAAYGDRVRLVRTRYSRFPAALAEAGWEKVDAALVDAGMSSLQLDDPERGFGFL 121

Query: 129 KSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             GPLDMRM     G SA  +VN A+   L  I+   GE+ QA RIA AIV  R+ A   
Sbjct: 122 TDGPLDMRMGAEDGGESAEGLVNLASFARLREIIRNYGEDPQAGRIARAIVAAREKAAIT 181

Query: 187 TTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT  L+ ++            R HPATR+FQALR+ VN+E++EL   L +  + L  GG 
Sbjct: 182 TTGRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELKELEAFLAAVPEYLATGGR 241

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+SFHSLEDRLVK+ F   +   +  R  ++    H A    +TKK V+  +E+VA N
Sbjct: 242 VAVISFHSLEDRLVKRAFRLEATDCLCPREQVVCVCGHKARLAILTKKPVMAGEEEVAAN 301

Query: 304 RRSRSAKLRAGMRTVERSIEDDS 326
            R+RSAKLR   R  + +   D+
Sbjct: 302 PRARSAKLRVARRLPDAAEATDA 324


>gi|251788242|ref|YP_003002963.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591]
 gi|263446384|sp|C6CJW6|RSMH_DICZE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247536863|gb|ACT05484.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591]
          Length = 313

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 171/314 (54%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  L+     + +D TFG GG+SR           ++A+DRDP AV 
Sbjct: 3   ETFKHTTVLLDEAVNGLSIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS+L +YV  +     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDARFSIIHGPFSELAEYVEARGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA+D + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAADWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       +    HPATRSFQA+RI++N+E+EE+ + L  A   L  GG L V
Sbjct: 180 TKALAELI-AAASPIREKYKHPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  + A          +S+ K  ++P  ++VA 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLRSQGGPTLKSVGK--MMPPDDEVAD 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRFAER 310


>gi|206901857|ref|YP_002250979.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum
           H-6-12]
 gi|263447293|sp|B5YEM1|RSMH_DICT6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206740960|gb|ACI20018.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum
           H-6-12]
          Length = 297

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 164/315 (52%), Gaps = 27/315 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H PV+L++VI  LN +PGK+++DAT G GG+S    +       +I +DRD  
Sbjct: 1   MEEVESIHKPVMLKEVIHYLNLSPGKIVVDATLGLGGHSSEILRELRGEGLLIGIDRDEE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +   +E +      F LF  T+  LQ+ + +     +D ++FDLG SS  I+   RGFS
Sbjct: 61  VLKLARERLSKIAGNFVLFNTTYDNLQNILKELNLSFIDAILFDLGFSSFHIEKSGRGFS 120

Query: 127 FQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           F +               +A+D++N  +  +L+ +    GEE  + ++A  IV+RR+   
Sbjct: 121 FMRPEEPLDMRYSKDTALTAADILNTFSESELSNLFWEYGEEPLSKKLAKKIVERRKDKK 180

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F    DL  +I + +   +    H AT+ FQALRI VN+E+    + L      L  GG 
Sbjct: 181 FAYVGDLLEVIDEVIPRRRR---HEATKVFQALRIAVNDELNIFKRALEQVPFILSIGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+++HSLEDR+VK FF S S K++                 ++KKV+ P+ E++  NR
Sbjct: 238 IVVITYHSLEDRIVKNFFKSYSDKILP----------------VSKKVIKPSIEEIKENR 281

Query: 305 RSRSAKLRAGMRTVE 319
           R+RSAKLR G R   
Sbjct: 282 RARSAKLRVGERREN 296


>gi|104783461|ref|YP_609959.1| S-adenosyl-methyltransferase MraW [Pseudomonas entomophila L48]
 gi|122401960|sp|Q1I5B0|RSMH_PSEE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|95112448|emb|CAK17175.1| S-adenosylmethionine methyltransferase MraW [Pseudomonas
           entomophila L48]
          Length = 315

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L            V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAGRDLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPNQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLETGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F             R++   +        +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKTFEPRIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|282850409|ref|ZP_06259788.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745]
 gi|282579902|gb|EFB85306.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745]
          Length = 310

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72
              +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S
Sbjct: 1   MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D K Q       FS L++ + +     VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  VARQRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT
Sbjct: 121 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 181 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     +         K + P+  ++  N R+R
Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 301 SAKLRVAVK 309


>gi|149371570|ref|ZP_01890986.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49]
 gi|149355197|gb|EDM43757.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49]
          Length = 298

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVLL   +  L   P  V +D TFG GG+SR   K       +IA D+D  A+  
Sbjct: 1   MEYHNPVLLHPTVDGLAIKPDGVYVDVTFGGGGHSREILKRLGPNGKLIAFDQDKDALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +       +F L    F  L+    +   K VDG++ D GVSS Q D  +RGFS +  
Sbjct: 61  VID-----DPRFVLVNENFRFLKRFLRFHGHKQVDGILADFGVSSHQFDVAERGFSTRFE 115

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      SA DVVN      L+ +L   GE + +  IA  I ++R++ P +T+ 
Sbjct: 116 AELDMRMDQGSAFSAYDVVNNYEESQLSSVLFQYGELRASKGIARVICEKRKNGPIKTSD 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   + + +   + ++I    + +QA+RI VN E+E + + L+ + + L  GG L V+S
Sbjct: 176 QLKEAVARFLPKHREHKI--LAQIYQAIRIEVNQELEVIKEFLQQSIEVLPVGGRLSVIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+F  +   +    + +      P        K ++P   ++  N R+RSA
Sbjct: 234 YHSLEDRLVKRFMRNGMFEGEPEKDVFGRAEVP---MKPVGKFIIPDAAEIKENNRARSA 290

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 291 KLRIAKK 297


>gi|148549600|ref|YP_001269702.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1]
 gi|262825108|sp|A5W8Q8|RSMH_PSEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148513658|gb|ABQ80518.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1]
          Length = 315

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 174/309 (56%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G+     GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F      G+   +   +P          + I  K    ++ ++  N RSR
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLI-GKAQFASEAELKANPRSR 304

Query: 308 SAKLRAGMR 316
           SA +R   +
Sbjct: 305 SAVMRVAEK 313


>gi|238898853|ref|YP_002924535.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|263456095|sp|C4K744|RSMH_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229466613|gb|ACQ68387.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 311

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 19/314 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
             H  VLL + +  LN     + +DATFG GG+S            +I++DRDP AV   
Sbjct: 4   NQHKTVLLYEAVDSLNIQNDGIYIDATFGRGGHSSLILSRLGSQGKLISIDRDPEAVKKA 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +        +FS  Q +FS L  YV        ++G++FDLGVSS Q+D   RGFSF + 
Sbjct: 64  KLMK---DPRFSFIQGSFSDLYHYVKKLDLMGRINGLLFDLGVSSPQLDDAKRGFSFMRD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM    G+SA++ + + NV++L  +L   GEE+ ++R+A AIV+R +  P ++T+
Sbjct: 121 GPLDMRMDPSRGLSAAEWLMKVNVENLAWVLKNFGEERFSTRLARAIVERNRLNPIKSTK 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ LI   +   +N+  HPATRSFQA+RI++NNE++E++  L +A + L  G  L VVS
Sbjct: 181 ELADLISHVI-PVRNHHKHPATRSFQAIRIYINNELQEISSALNAALEILSLGARLSVVS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK F    S     +R +  +            + I K   +P+Q++V  N 
Sbjct: 240 FHSLEDRIVKNFIRQHSRGPQILRGLPLTEIQIQSMWQPKLKLIGK--TMPSQKEVLDNP 297

Query: 305 RSRSAKLRAGMRTV 318
           RSRS+ LR   R  
Sbjct: 298 RSRSSILRFAERIN 311


>gi|325102881|ref|YP_004272535.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145]
 gi|324971729|gb|ADY50713.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145]
          Length = 302

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 16/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPV+L + I  L+  P  V +D TFG GG+SR   K       ++A D+D  A     
Sbjct: 5   YHVPVMLSECIEGLDIKPDGVYVDVTFGGGGHSREIIKHLGEDGVLVAFDQDVDAQQN-- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              R   ++F      F  L++         VDG++ DLGVSS Q D  +RGFS +  G 
Sbjct: 63  ---RIADDRFVFIDQNFRYLKNNLRLHGLAPVDGILADLGVSSHQFDVPERGFSIRFDGD 119

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  SG  +A  V+ + + ++L +I GI GE + A  +A  IV  R +    T +DL
Sbjct: 120 LDMRMDQSGELTAKKVIGEYSEEELHKIFGIYGEIQNARSLAKTIVTARLNKEIVTIEDL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S I K +  +K N+     + FQALRI VN E+E L + L  A + LK GG L+V+S+H
Sbjct: 180 KSAIAKLIPRNKENK--YLAQVFQALRIEVNQEMEVLKEFLEQAAEVLKPGGRLVVMSYH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F           +    +   P  F  +TKK +  ++E++  N RSRSA+L
Sbjct: 238 SLEDRLVKNFMMKGKFSGQVEKDFYGNEIKP--FTVLTKKSITASEEELLRNNRSRSARL 295

Query: 312 RAGMRTV 318
           R  ++  
Sbjct: 296 RIAVKND 302


>gi|152992227|ref|YP_001357948.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1]
 gi|262825720|sp|A6Q7Y2|RSMH_SULNB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151424088|dbj|BAF71591.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1]
          Length = 307

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 164/301 (54%), Gaps = 6/301 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
               H+PVLLE+V+   +  P    +D T G  G+S    K   ++  I +DRD  A++ 
Sbjct: 1   METPHIPVLLEEVLESFSRVPEGYFVDCTLGYAGHSSEILKRYDHLKHIGIDRDDEALAF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +  ++++ +L++ TF+ +   + +  V  ++ D GVSS+Q+D  +RGF+F      
Sbjct: 61  SKKRLEPFRDRSTLYKGTFATVLPTLKEAPVTALLADFGVSSLQLDKKERGFAFDSETLD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
               + + +SA +VVN    + L  I    GE +   ++A A+V  R  AP ++ + LS 
Sbjct: 121 MRMDANAPLSAYEVVNTYPKEKLEYIFDTYGEVRSYKKLASAVVDARAKAPIESAKALSE 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           + +  +      +IHPAT  FQA+RI VNNE+ E+   L + E     G ++ +++FHSL
Sbjct: 181 IAKGVIPPG--GKIHPATLMFQAIRIEVNNELGEIEGLLDAIEAKHYEGEVVSLITFHSL 238

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDRLVK  F   S + +   H I        A+ +++++K V  ++E++  N RSRSAKL
Sbjct: 239 EDRLVKNRFRKWSQECICDPHAIRCTCGKKHALGKALSRKPVTASKEELRVNPRSRSAKL 298

Query: 312 R 312
           R
Sbjct: 299 R 299


>gi|329848184|ref|ZP_08263212.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19]
 gi|328843247|gb|EGF92816.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19]
          Length = 317

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 131/311 (42%), Positives = 190/311 (61%), Gaps = 5/311 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
               H+ VLL +V+ +L     K+I+D TFGAGGYSR+F   G+ V+A DRD       +
Sbjct: 3   EAAAHLSVLLPEVLTVLGNLEDKLIVDGTFGAGGYSRAFLLGGARVVAFDRDARVRPFVE 62

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +++ ++F      FS++ +    +     D +V D+GVSSMQ+D  DRGFSF + GP
Sbjct: 63  ALSQEFPDRFQWVNRCFSEMAEGLAELGHASCDAIVLDIGVSSMQLDEADRGFSFMRDGP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D+VN  +  D+  ++ + GEE ++  IA AIV+RR++ PF+ T DL+
Sbjct: 123 LDMRMSVDGRSAADIVNDDDKDDIAHVIWLYGEEHKSRSIASAIVRRREAQPFERTLDLA 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   +   +HPATR+FQALRI VN+E+ EL + L  AE  L+  G+L VV+FHS
Sbjct: 183 EVVERALGGRRGAPVHPATRTFQALRIAVNDELGELERALEVAEILLRPDGVLAVVTFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK FF  RSGK+       P        V+  IT K V  ++ ++A N RSRSAK
Sbjct: 243 LEDRIVKNFFNDRSGKMAGGSRHAPQKLATRTPVYTLITPKAVQASEAEIAGNPRSRSAK 302

Query: 311 LRAGMRTVERS 321
           LRA  R    +
Sbjct: 303 LRAVRRNRAPA 313


>gi|302550804|ref|ZP_07303146.1| MraW methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302468422|gb|EFL31515.1| MraW methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 318

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 186/314 (59%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A
Sbjct: 2   SQSRHVPVMLQRCLDLLAPALEGPGPVVVDCTLGLGGHSEALLERFPEARLVALDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  Y E+ +L  A + +L + +     + V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLAGERLAPYGERATLVHAVYDELPEVLDKLGIRRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 122 AQDAPLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFS 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A +AL  GG +
Sbjct: 182 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVEALDVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R  E
Sbjct: 302 AAPARLRGAQRIRE 315


>gi|169794472|ref|YP_001712265.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|184159721|ref|YP_001848060.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii ACICU]
 gi|215482062|ref|YP_002324244.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           AB307-0294]
 gi|239501976|ref|ZP_04661286.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB900]
 gi|260556905|ref|ZP_05829122.1| MraW methylase [Acinetobacter baumannii ATCC 19606]
 gi|332851366|ref|ZP_08433418.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150]
 gi|332868777|ref|ZP_08438400.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113]
 gi|332873764|ref|ZP_08441706.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059]
 gi|263433333|sp|B7GVN1|RSMH_ACIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433342|sp|B2I0K7|RSMH_ACIBC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433359|sp|B0V8N7|RSMH_ACIBY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263437330|sp|A3M9K5|RSMH_ACIBT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169147399|emb|CAM85260.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|183211315|gb|ACC58713.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Acinetobacter baumannii ACICU]
 gi|193078572|gb|ABO13599.2| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213987451|gb|ACJ57750.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           AB307-0294]
 gi|260409511|gb|EEX02812.1| MraW methylase [Acinetobacter baumannii ATCC 19606]
 gi|322509634|gb|ADX05088.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323519652|gb|ADX94033.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730082|gb|EGJ61410.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150]
 gi|332733206|gb|EGJ64403.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113]
 gi|332737987|gb|EGJ68872.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059]
          Length = 307

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +   + VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|26988063|ref|NP_743488.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida KT2440]
 gi|38258006|sp|Q88N84|RSMH_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24982787|gb|AAN66952.1|AE016324_2 conserved hypothetical protein TIGR00006 [Pseudomonas putida
           KT2440]
          Length = 315

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G+     GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G+SA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F      G+   +   +P          + I  K    ++ ++  N RSR
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLI-GKAQFASEAELKANPRSR 304

Query: 308 SAKLRAGMR 316
           SA +R   +
Sbjct: 305 SAVMRVAEK 313


>gi|320334677|ref|YP_004171388.1| ribosomal RNA small subunit methyltransferase H [Deinococcus
           maricopensis DSM 21211]
 gi|319755966|gb|ADV67723.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           maricopensis DSM 21211]
          Length = 295

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 161/305 (52%), Gaps = 23/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            H+PVL  +V+  L P PG+V +D T G  G++R     G+ V  +D+DP+A+   +   
Sbjct: 8   THIPVLATEVLDALQPQPGQVFVDGTLGGAGHTRLLLAAGATVYGIDQDPYALERNR--- 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                   + +  F  ++  + D     VDGV+ D+GVSS Q+D   RGFS+    PLDM
Sbjct: 65  AAGLNGLHVLEGNFRDMRALLNDAGVDHVDGVLLDIGVSSFQLDDAARGFSYHTEAPLDM 124

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G SA+D+VN     DL  I+   GEE+ + RIA  IV  R   P  TT  L+ +I
Sbjct: 125 RMSQGGDSAADLVNDMEEADLAAIIFEYGEERHSRRIARGIVNARDKGPISTTTQLADII 184

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++         IHPA R+FQALRI VN+E+  L  GL+ A   L+ GG L V+SFHSLED
Sbjct: 185 KRAYPGGHARGIHPARRTFQALRIAVNDELGALRDGLQGASDLLRPGGRLAVISFHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+F                          +TK+ +   +++ A N R+RSAKLR   
Sbjct: 245 RIVKRFL-----------------LADPTLDPLTKRPIEAAEDEQARNPRARSAKLRGAR 287

Query: 316 RTVER 320
           +  E 
Sbjct: 288 KRAEE 292


>gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Boryong]
 gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 180/312 (57%), Gaps = 8/312 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74
               H PV+  ++++ L P   +  LD TFG GGYS+         +IA DRDP  +S  
Sbjct: 1   MNNIHTPVMATEMLSYLAPVDNETYLDCTFGTGGYSKLILSNCNCKIIAFDRDPAVISIA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + Y  +F+ F   F +   Y+     ++G+V DLGVSSMQ+D  +RGFSF+    L
Sbjct: 61  SQFYQQYSNRFTFFNDNFVEANKYLSKSAKLNGIVMDLGVSSMQLDAANRGFSFRYDAEL 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G  AS++VN+A+   L  I+   GEE +A++IA  IV  R+  P  TT  L++
Sbjct: 121 DMRMSQKGYKASELVNEASEHQLADIIYKFGEENKANKIAKHIVLAREKKPITTTLQLAN 180

Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +I++ V    + K N+I  AT++FQA+RIF+N+E+  +   L  + + L   G LIVVSF
Sbjct: 181 IIREAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSR 307
           H+LED +VKKF    + K +A      +   P    V   +TKK+ VPT+ ++  N RSR
Sbjct: 241 HALEDAIVKKFMHQNAVKKVAQSKYSTNKQLPLQNGVLHLLTKKIAVPTRTEIINNPRSR 300

Query: 308 SAKLRAGMRTVE 319
           SA+LRA ++  E
Sbjct: 301 SARLRAALKINE 312


>gi|331016726|gb|EGH96782.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 313

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F    SQ Q+      V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|302185277|ref|ZP_07261950.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae 642]
          Length = 313

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA+  +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAQFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|260063719|ref|YP_003196799.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata
           HTCC2501]
 gi|88783164|gb|EAR14337.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata
           HTCC2501]
          Length = 312

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 152/309 (49%), Gaps = 15/309 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +  H PVLL + +  L        +D TFG GG+SR           +IA D+D  A++
Sbjct: 3   EMKYHKPVLLRESVDGLAIREDGTYVDVTFGGGGHSREILGRLGPKGRLIAFDQDEEALA 62

Query: 73  CG--QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                E      E F   +    Q   +     VDG++ D GVSS Q D  +RGFS +  
Sbjct: 63  NKPEDERFLLIGENFRYIR----QFLKFYGILKVDGILADFGVSSHQFDRAERGFSTRFD 118

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRMS    I+A DVVN  + + L  +L   GE + A +IA  +V+ R  A  QTT 
Sbjct: 119 AGLDMRMSRRAEITARDVVNTYSFEKLRSVLQRYGELRSAGKIAGELVRARDKASIQTTY 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+  +   +   K N+     R +QA+R+ VN E+  L   L+     L  GG L ++S
Sbjct: 179 GLNEAVSAFLPRGKENK--VLARIYQAIRMEVNQELAALEAFLQQTAALLPTGGRLSLIS 236

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+F  +   +    +    +   P  F+ +  K++VP  +++  N R+RSA
Sbjct: 237 YHSLEDRLVKRFIRTGKFEGEVDKDFYGNPLAP--FRKV-GKLIVPGDDELEENPRARSA 293

Query: 310 KLRAGMRTV 318
           KLR   RT 
Sbjct: 294 KLRIAERTD 302


>gi|294793912|ref|ZP_06759049.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44]
 gi|294455482|gb|EFG23854.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44]
          Length = 311

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72
              +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S
Sbjct: 2   MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D K Q       FS L++ + +     VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 62  VARQRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT
Sbjct: 122 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 182 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     +         K + P+  ++  N R+R
Sbjct: 242 ITFHSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 301

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 302 SAKLRVAVK 310


>gi|189502287|ref|YP_001958004.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|263446692|sp|B3ESS3|RSMH_AMOA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189497728|gb|ACE06275.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 310

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 162/314 (51%), Gaps = 9/314 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M      +   H PVLLE+ +  L   P  + +D TFG GG++++         + A D+
Sbjct: 1   MEILNEPSSTYHQPVLLEESLQGLAIQPDGIYIDTTFGGGGHAKAILAQLKRGKLFAFDQ 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           D  A S       D    F    + F Q    Y   + +DG++ DLGVSS QID   RGF
Sbjct: 61  DEDAESIASTW-HDPNFTFIRANSRFIQRFLAYHQIEKIDGLIADLGVSSYQIDTALRGF 119

Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S +  GPLDMRM  S   +AS +VN  + + LT++    GE   A  +A A++  R   P
Sbjct: 120 STRSEGPLDMRMDQSSSLTASQIVNTYSFEALTQLFRTYGELHSAPALAKALIAARTKHP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TTQ L  +     +           + FQALRI VN+E+  L   L  + + LK GG 
Sbjct: 180 IETTQSLKEIALP--FSPPRKSAKFLAQVFQALRIEVNDELGALKSLLEQSLQLLKPGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+++S+HSLEDRLVK+F  + + +    + M  +   P  F  + KK +VPT+E++  N 
Sbjct: 238 LVIISYHSLEDRLVKRFIKTGNFEGELDKDMYGNPLQP--FVPVYKKAIVPTEEELVINS 295

Query: 305 RSRSAKLRAGMRTV 318
           RSRSAKLR G RT 
Sbjct: 296 RSRSAKLRVGERTA 309


>gi|28871551|ref|NP_794170.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213966575|ref|ZP_03394726.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           T1]
 gi|301384710|ref|ZP_07233128.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059802|ref|ZP_07251343.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           K40]
 gi|302131749|ref|ZP_07257739.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|38257958|sp|Q87WX7|RSMH_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28854802|gb|AAO57865.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213928425|gb|EEB61969.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           T1]
          Length = 313

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F    SQ Q+      V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|330888582|gb|EGH21243.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 313

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIPGKAQFASDTETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|315443914|ref|YP_004076793.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1]
 gi|315262217|gb|ADT98958.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1]
          Length = 353

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 175/318 (55%), Gaps = 11/318 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
           S+A+      HVPVLL++ + LL P     G  ++DAT GAGG+S  F        +I L
Sbjct: 34  SAAMVDDQP-HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGL 92

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
           DRDP A+    E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  
Sbjct: 93  DRDPDALRIAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRV 152

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+    PLDMRM   + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR
Sbjct: 153 ERGFSYSTDAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRR 212

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF TT +L  L+   +    +    HPA R+FQALRI VN E+E L   + +A +AL
Sbjct: 213 AVTPFTTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQAL 272

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           +  G L V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E+
Sbjct: 273 RPHGRLAVMAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEE 332

Query: 300 VAFNRRSRSAKLRAGMRT 317
           +  N RS   +LRA  + 
Sbjct: 333 IERNPRSAPVRLRAVEKV 350


>gi|145223567|ref|YP_001134245.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK]
 gi|145216053|gb|ABP45457.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK]
          Length = 371

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 175/318 (55%), Gaps = 11/318 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
           S+A+      HVPVLL++ + LL P     G  ++DAT GAGG+S  F        +I L
Sbjct: 52  SAAMVDDQP-HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGL 110

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
           DRDP A+    E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  
Sbjct: 111 DRDPDALRIAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRV 170

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+    PLDMRM   + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR
Sbjct: 171 ERGFSYSTDAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRR 230

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF TT +L  L+   +    +    HPA R+FQALRI VN E+E L   + +A +AL
Sbjct: 231 AVTPFTTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQAL 290

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           +  G L V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E+
Sbjct: 291 RPHGRLAVMAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEE 350

Query: 300 VAFNRRSRSAKLRAGMRT 317
           +  N RS   +LRA  + 
Sbjct: 351 IERNPRSAPVRLRAVEKV 368


>gi|255320234|ref|ZP_05361419.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens
           SK82]
 gi|262380450|ref|ZP_06073604.1| MraW methylase [Acinetobacter radioresistens SH164]
 gi|255302673|gb|EET81905.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens
           SK82]
 gi|262297896|gb|EEY85811.1| MraW methylase [Acinetobacter radioresistens SH164]
          Length = 303

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +A  L      + +DATFG GG+SR         + V A D+DP A++   
Sbjct: 3   HISVLLHETVAAVLAERNTGIYVDATFGRGGHSRELLAQLNTDAQVYAFDKDPQALAVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F +  A+F+ L+  +       VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  E-LEQQDARFKIIHASFADLKQELEKIGITEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ +     + L  I+   GEE+ + R+A AI +        TT  L
Sbjct: 122 LDMRMDNSQGQTAAEWLVNIEEEALANIIYQYGEERYSRRLARAIKQA---GYIATTGQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKAAHPKWEKHK-HPATRTFQAIRIAINKELEDIELFLPQAVDILKPHGRLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         M          + I++  +  +  +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESSLAEDSGWGMPQIQQDTRRLKKISR--IKASDAEVKENPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 296 LRVAERLA 303


>gi|58038635|ref|YP_190599.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H]
 gi|68565412|sp|Q5FUK3|RSMH_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58001049|gb|AAW59943.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H]
          Length = 323

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 172/309 (55%), Gaps = 6/309 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67
           M++ I      HVPV+L +V+  L+P  G   LD TFG GGY+R+        + A+DRD
Sbjct: 1   MNA-ITLVHSGHVPVMLHEVLEALSPRAGGRYLDGTFGGGGYARAILNAADCTLDAIDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           P A+  G         +  + Q TF  ++     +   DG+V DLGVSS QID  +RGFS
Sbjct: 60  PAAIERGNAMAVQANGRLRMHQGTFGDMEALAGAEGPFDGIVLDLGVSSFQIDQAERGFS 119

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  GPLDMRM   G SA+D+VN     +L  IL   GEEK + RIA AIV  R  AP  
Sbjct: 120 FRNDGPLDMRMGSDGPSAADLVNTCKEAELADILYRYGEEKLSRRIARAIVAARAEAPIT 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+ +I+  V   + N I PATRSFQ LRI VN+E+ EL + L +A + L  GG+ +
Sbjct: 180 TTGQLAHIIRCCVPRDRAN-IDPATRSFQGLRIAVNDELGELERALEAAPRLLAPGGIFV 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           VV+FHSLEDRL K+  A  +G+          P       F  +  + +  T E+   N 
Sbjct: 239 VVTFHSLEDRLAKRAMAVLAGRTGNPSRYEPAPLRQEAPAFSLLYSRPLSATDEESRENP 298

Query: 305 RSRSAKLRA 313
           R+RSA+LRA
Sbjct: 299 RARSARLRA 307


>gi|73667110|ref|YP_303126.1| S-adenosyl-methyltransferase MraW [Ehrlichia canis str. Jake]
 gi|88909200|sp|Q3YRX7|RSMH_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72394251|gb|AAZ68528.1| methyl transferase [Ehrlichia canis str. Jake]
          Length = 297

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 131/304 (43%), Positives = 191/304 (62%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL++++ +L+P  GK+ +DATFGAGGY+++        V A+D+D       +E 
Sbjct: 1   MHTPVLLKEMLEILDPQDGKIYVDATFGAGGYTKAILNAANCKVCAIDQDKHTSIFYEEL 60

Query: 78  MRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             ++  +   F   FSQ++        + VDGVVFD+GVSSMQ+D  +RGFSF K+GPLD
Sbjct: 61  ANNFPNRIHFFINKFSQIKQVLLGAQLERVDGVVFDIGVSSMQLDDANRGFSFSKNGPLD 120

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRMS  + I AS  VN  + +++  I+   G EK + +IA AI+  R+    +TT +L+S
Sbjct: 121 MRMSTSNSIDASVFVNTVSEEEIANIIYQYGGEKYSRKIAKAIINFRKKKVIETTGELAS 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  V  SKN+ I+PATR+FQA+RI+VN E++EL QG+  A   L  GG +IVVSFHSL
Sbjct: 181 IVRSVVSRSKNHDINPATRTFQAIRIWVNKELQELEQGIMCAADLLNPGGKIIVVSFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  F S     ++++           FQ I KK+V P+ E++  N RSRSAKLRA
Sbjct: 241 EDRIVKMIFKSLCSDEISLKL-------NTGFQLINKKIVRPSFEEILNNPRSRSAKLRA 293

Query: 314 GMRT 317
            ++ 
Sbjct: 294 ILKI 297


>gi|289677689|ref|ZP_06498579.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae FF5]
          Length = 313

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|71735888|ref|YP_276238.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|88909210|sp|Q48EF0|RSMH_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71556441|gb|AAZ35652.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322458|gb|EFW78551.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330073|gb|EFW86060.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875017|gb|EGH09166.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 313

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALEVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|254515249|ref|ZP_05127310.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3]
 gi|219677492|gb|EED33857.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3]
          Length = 308

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 166/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + +  L  +P  + +D TFG GG+SR   K       + A D+D  A  
Sbjct: 1   MAAPHETVLLHEAVDSLVSSPAGLYVDGTFGRGGHSREILKRLNDDGRLFACDKDEEAER 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +     +FS  + +F+ L   +       V G++ DLGVSS Q+D  +RGFSFQ 
Sbjct: 61  DALE-LAGEDGRFSFARGSFAALPALLAQHGLGPVHGILLDLGVSSPQLDQAERGFSFQH 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+D +  A+ +++  +L   GEE+ A RIA AIV+ R   P   T
Sbjct: 120 DGPLDMRMDRSRGESAADWIASASEQEIIDVLREYGEERFARRIAGAIVRARAETPLTRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L++++ +     + ++ HPATR+FQA+RI VN E+++LA+ L  A   L  GG L+V+
Sbjct: 180 SQLAAIVSEAHPRWEKHK-HPATRAFQAIRIRVNRELDDLAELLSVALSVLAVGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK+     S      R++   +        +  K    ++E+VA N RSRS
Sbjct: 239 SFHSLEDRLVKRHLRDMSRGPQLPRNLPVRDVESGAQMRLLGKAQRASKEEVAGNPRSRS 298

Query: 309 AKLRAGMRTV 318
           A +R   +  
Sbjct: 299 AIMRCAEKLA 308


>gi|34540382|ref|NP_904861.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83]
 gi|42559440|sp|Q7MWN0|RSMH_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34396695|gb|AAQ65760.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83]
          Length = 311

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 9/309 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71
                H+PV+L + +  L   P    +D TFG GG+SR+          +   D+D  A 
Sbjct: 6   KESVYHIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADA- 64

Query: 72  SCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +  ++D +  F      + +   DY  + GVDG++ DLGVSS   D  +RGFSF+  
Sbjct: 65  --CRNILQDERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSE 122

Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            PL      + +G +A+ ++N+ +   L+ +    GE KQA R A +IV  R+S      
Sbjct: 123 SPLLDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQ 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
                L       S           FQALRI VN+E+  L Q L +A   L++GG L+V+
Sbjct: 183 TVGQLLEAVRGLISPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVM 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK      + K      +    A  + +Q IT+K +  + ++++ N RSRS
Sbjct: 243 TYHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRS 302

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 303 AKLRIAEKI 311


>gi|299139518|ref|ZP_07032692.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8]
 gi|298598446|gb|EFI54610.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8]
          Length = 324

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 116/315 (36%), Positives = 164/315 (52%), Gaps = 28/315 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
                 HVPVLLE+ +  L   PG V +DAT G GG+S +  +       +I  DRDP A
Sbjct: 14  TMERPQHVPVLLEESLKYLKVRPGGVYVDATLGLGGHSAAIARQLGGAGKLICFDRDPEA 73

Query: 71  VSCGQETMR-------DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           ++  Q  +            Q       FS++ + V    +DG++ D GVSS+Q+D   R
Sbjct: 74  MAKAQARLAAVAEELGPEMPQVRYVPRAFSEIDEEVEPNSLDGLLADFGVSSLQLDEAHR 133

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM      +A  VVNQA+ +DL  ++   G   +  R         ++
Sbjct: 134 GFSFRTDGPLDMRMDSRSELTAQQVVNQADEEDLANLIYEFG---EERRSRRIARAIVRA 190

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P +TT +L+ +I       K ++IHPATR+FQALRI VN+EI ++   L SAE  LK G
Sbjct: 191 RPIETTAELARVISAVTPSMKGDKIHPATRTFQALRIRVNDEIGQIQSLLHSAESLLKPG 250

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++++SFHSLEDR VK  F   +                   + +TKK VV  +++   
Sbjct: 251 GRVVLISFHSLEDRPVKDAFREGAKAG--------------RLEILTKKPVVAGEQESLR 296

Query: 303 NRRSRSAKLRAGMRT 317
           N RSRSAKLRA  + 
Sbjct: 297 NPRSRSAKLRAAEKV 311


>gi|260550822|ref|ZP_05825029.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406132|gb|EEW99617.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 307

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAG 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +   + VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   + L  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|188994484|ref|YP_001928736.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC
           33277]
 gi|262824880|sp|B2RIE4|RSMH_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188594164|dbj|BAG33139.1| putative S-adenosyl-methyltransferase MraW [Porphyromonas
           gingivalis ATCC 33277]
          Length = 311

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 153/309 (49%), Gaps = 9/309 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71
                H+PV+L + +  L   P    +D TFG GG+SR+          +   D+D  A 
Sbjct: 6   KESVYHIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADA- 64

Query: 72  SCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +  ++D +  F      + +   DY  + GVDG++ DLGVSS   D  +RGFSF+  
Sbjct: 65  --CRNVLQDERFTFVPSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSE 122

Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            PL      + +G +A+ ++N+ +   L+ +    GE KQA R+A +IV  R+S      
Sbjct: 123 SPLLDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRLAASIVHYRESLSGGLQ 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
                L       S           FQALRI VN+E+  L Q L +A   L++GG L+V+
Sbjct: 183 TVGQLLEAVRGLISPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVM 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK F    + K      +    A  + +Q IT+K +  + ++++ N RSRS
Sbjct: 243 TYHSLEDRMVKNFLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRS 302

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 303 AKLRIAEKI 311


>gi|330877141|gb|EGH11290.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 313

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F    SQ Q+      V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|302344204|ref|YP_003808733.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075]
 gi|301640817|gb|ADK86139.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075]
          Length = 316

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H PVLL + +  + P PG + +D T GAGG++ +  +       ++ LDRD  A++
Sbjct: 1   MTAGHRPVLLAETLRAMQPKPGGIYVDGTLGAGGHAAAILEACGPTGRLLGLDRDAQALA 60

Query: 73  CGQETMRDYKE-QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                +  + + +  L QA+F ++   +        DG++ DLGVSSMQ+D G RGFSF 
Sbjct: 61  LATANLAGFDQARLRLTQASFDEIGQCLSAWGVAACDGILLDLGVSSMQLDQGQRGFSFM 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM  SG  A+++V  ++   LT I   LGEE  A R A A+++ R+  P  +T
Sbjct: 121 HDGPLDMRMGQSGPGAAELVADSDQNRLTAIFRDLGEEPLARRYAQAVIEARRQGPIVST 180

Query: 189 QDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L+++I+ +      + ++IHPATR FQALR+ VN+E+  L + L  A   L  GG+L 
Sbjct: 181 GRLAAVIEASTPAAVRRKSKIHPATRVFQALRLAVNDELGRLERFLAGAPAWLNPGGVLA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR VK+   + +        +         +F   + K + P+  +VA N R
Sbjct: 241 VISYHSLEDRRVKRSLRAAANPCTCPPDLPRCVCGRRPLFDLPSHKAITPSAVEVAQNPR 300

Query: 306 SRSAKLRAGMRTVE 319
           SRSA+LR  +RT  
Sbjct: 301 SRSARLRVAVRTEA 314


>gi|225011606|ref|ZP_03702044.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-2A]
 gi|225004109|gb|EEG42081.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-2A]
          Length = 299

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 154/306 (50%), Gaps = 11/306 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PVLL+  +  L+  P  + +DATFG GG+SR           ++  D+D  A++
Sbjct: 1   MTQYHNPVLLQASLEGLHIRPNGIYVDATFGGGGHSRVILDRLGKEGRLLGFDQDVDALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E      +  +   +  +Q   Y     VDG++ D GVSS Q D  +RGFS +    
Sbjct: 61  NNIE--DSRFDFVAANFSHLTQYLKYHKIDKVDGILADFGVSSHQFDTQERGFSIRTDAR 118

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S    A  V+N  +   L  +    GE K +  I+  IV+ R+     TT DL
Sbjct: 119 LDMRMNQSQDLDAHKVINTYSEDKLRMLFFAYGELKNSKTISRTIVEAREECEIITTMDL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             L++  V     N+I    + FQALRI VN+E+E L   L  A + L  GG L+ +S+H
Sbjct: 179 IELVKPLVPKRIENKI--LAQLFQALRIEVNDELEALKSFLIQANEVLVQGGRLVCISYH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK++F + S      +    +   P   + I  K+++P+ ++V  N R+RSAKL
Sbjct: 237 SLEDRLVKRYFQTGSFDGELEKDFYGNPIKP--LKKI-GKLIIPSSDEVKENGRARSAKL 293

Query: 312 RAGMRT 317
           R   + 
Sbjct: 294 RIAEKI 299


>gi|269798180|ref|YP_003312080.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008]
 gi|269094809|gb|ACZ24800.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008]
          Length = 310

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72
              +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S
Sbjct: 1   MEFNHTSVLLHETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ + D K Q       FS L++ + +     VDG +FDLGVSS Q+D  +RGFS+  
Sbjct: 61  VARQRLSDLKCQVLTIPTNFSNLKEALRNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT
Sbjct: 121 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V
Sbjct: 181 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+ K+ F   S   +    +     +         K + P+  ++  N R+R
Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPQLPMCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 301 SAKLRVAVK 309


>gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
 gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
          Length = 304

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 154/314 (49%), Gaps = 17/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H PVLLE+ I  L   P  V +D T+G GG+SR           + A D+D  
Sbjct: 1   MTQQSSYHSPVLLEESIDGLAINPSGVYVDVTYGGGGHSREILSRLGEDGKLFAFDQDLD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A+    E       +F+L    F  ++ ++       VDG++ DLGVSS Q D  DRGFS
Sbjct: 61  ALENVIE-----DPRFTLINQNFRFMKRFLRMYGVKEVDGILADLGVSSHQFDEADRGFS 115

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +    LDMRM+      A  VVN     DL RI    GE + A R+  AI+ +RQ    
Sbjct: 116 TRFDARLDMRMNQESELDAVRVVNDYEEDDLNRIFKEYGELRIAPRLTRAIIAKRQEGLI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T   L  +    V     ++     + FQA+RI VN E++ L + L  +++ LK GG L
Sbjct: 176 ETVAQLKEICAPFVPERIQHK--MLAQVFQAIRIEVNQEMDVLEEFLIQSKEILKTGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDR VK+F  +        + +    + P  F+ +  K+++PT   +  N R
Sbjct: 234 SVISYHSLEDRPVKRFMRNGLFHGEPEKDVFGRASVP--FKKV-GKLIIPTAAQIKENNR 290

Query: 306 SRSAKLRAGMRTVE 319
           +RSAKLR   R  +
Sbjct: 291 ARSAKLRIAQRIED 304


>gi|262280350|ref|ZP_06058134.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258128|gb|EEY76862.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 307

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 169/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + I  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLSETIESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            T+     +F++  A+F+ +++ + +     VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  ATLAQEDSRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   + L  ++   GEE+ + RIA AI         +TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLKIEEEQLANVIYQYGEERYSRRIAKAIKLA---GKLETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AEVVKTAHPKWEKHK-HPATRAFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         M          + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  E+
Sbjct: 296 LRVAERLEEK 305


>gi|78046379|ref|YP_362554.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|88909226|sp|Q3BXF9|RSMH_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78034809|emb|CAJ22454.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 337

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 172/308 (55%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   +G SA+  + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|226943445|ref|YP_002798518.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ]
 gi|263446785|sp|C1DQ91|RSMH_AZOVD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226718372|gb|ACO77543.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ]
          Length = 313

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 173/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L+   G   LD TFG GG+SR           ++  D+DP AV+ G  
Sbjct: 7   HITVLLEEAVDALSIREGGCYLDGTFGRGGHSRLILGRLGAGGILLGFDKDPQAVAAGLA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D +  +     V GV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LATEDARFVIVQRSFAELADEMKMRGLVGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ + QA+ +++  +    GEE+ A R+A A+V+RRQ  PF+ T DL
Sbjct: 126 LDMRMDPGRGLSAAEWLAQASCEEIAHVFKDYGEERFARRMAQAVVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  + +PATR+FQ LRI +NNE+ +L QGL +A + L+ GG L V+SFH
Sbjct: 186 AQVLAAANPAWEKGK-NPATRAFQGLRIHINNELGDLEQGLDAALEVLEVGGRLAVISFH 244

Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F   +         R +    A       +  K    ++ ++  N R+RSA
Sbjct: 245 SLEDRIVKRFMRRQVKGEADKLPRDLPIRPAAFEPRLKLIGKPRYASESELKTNPRARSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 IMRVAEK 311


>gi|94676738|ref|YP_588954.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|263445957|sp|Q1LSW0|RSMH_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94219888|gb|ABF14047.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 317

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 116/318 (36%), Positives = 178/318 (55%), Gaps = 18/318 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H+PVLL + +  LN     + +D TFG GG+SR           ++A+DRDP 
Sbjct: 1   MAIDYDKHIPVLLNEAVTALNIKKDGIYIDGTFGRGGHSRLILSKLGNKGRLLAIDRDPA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++ G+     +  +F++ Q  FS + DY+ +      +DG++ DLG+SS Q+   DRGF
Sbjct: 61  AIAAGRNI---HDLRFTIVQRPFSTIADYIAELNLIGCIDGILLDLGISSPQLADPDRGF 117

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+ +G LDMRM    GISA + + QA+V+++T +L   GEE+ A RI+ AI  + +   
Sbjct: 118 SFRHNGKLDMRMDTTCGISAREWLKQASVQEMTWVLQHFGEERFAKRISQAIFHQNRRRL 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+ LI   V +S  ++ HPATRSFQA+RI++NNE++E+ Q L SA   L  GG 
Sbjct: 178 ITSTSELAKLITTIVPWSNKHK-HPATRSFQAIRIYINNELKEIEQVLNSALNILAIGGK 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQE 298
           L+V+SFHSLEDRLVK F    S   +    +  +                    + P+ +
Sbjct: 237 LVVISFHSLEDRLVKYFINKHSKLPLPPTGISLTEKQIADLYKNRHLTLKNLGKIRPSIQ 296

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N R+RSA LR   +
Sbjct: 297 EIKVNPRARSALLRFAEK 314


>gi|299533126|ref|ZP_07046511.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44]
 gi|298718903|gb|EFI59875.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44]
          Length = 309

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 168/310 (54%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL++ +  L       P    +DATFG GG+SR   +       +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +   +  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  EAARI---TDARFSIRHEGFRHLGELP-EGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+S     T   
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SFH
Sbjct: 183 LAQLVAGAVKTREAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S + +  R    +   P   +++ +  + P+  +V  N RSRSA +
Sbjct: 243 SLEDRIVKQFIAKHSKE-IYDRRAPFAPPTPMRLKALER--IKPSAAEVDANPRSRSAVM 299

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 300 RVAERTEVPA 309


>gi|325980947|ref|YP_004293349.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212]
 gi|325530466|gb|ADZ25187.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212]
          Length = 308

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 171/311 (54%), Gaps = 15/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H PVLL   +  L   P  + +DATFG GG+SR           +IALDRDP AV  G+
Sbjct: 1   MHTPVLLHAAVDALALKPEGIYVDATFGRGGHSRLILSGLGECGRLIALDRDPAAVLSGE 60

Query: 76  ETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  ++F +   +FS   ++   +    +DGV+ DLGVSS Q++   RGFSF+ +GP
Sbjct: 61  AI---TDKRFCIRHGSFSRVREILQAMEITRIDGVLLDLGVSSPQLEDTARGFSFRSAGP 117

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +AS+ ++  +  +L  ++   GEE+ A +IA AI+  R   P  TT  L
Sbjct: 118 LDMRMDTSGGQTASEWLSTVSESELEWVIKEYGEERFARQIARAILAARTQQPIATTLQL 177

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + ++   V    ++++ HPATR+FQA+RI++N E+EELA  L      L+ GG L+V+SF
Sbjct: 178 AGIVAAVVRARQRDSKRHPATRTFQAIRIYLNRELEELALVLPQCVDLLRPGGRLVVISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNRRS 306
           HSLEDR+VK+F  + +      R +         F   T     + +   + +V  N RS
Sbjct: 238 HSLEDRMVKQFIRAAASTDNLPRGVPVREEELQRFSKQTLRPVGRAIRSNELEVTENVRS 297

Query: 307 RSAKLRAGMRT 317
           RSA +R G R 
Sbjct: 298 RSAVMRVGERI 308


>gi|113478175|ref|YP_724236.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101]
 gi|123351672|sp|Q10VG1|RSMH_TRIEI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110169223|gb|ABG53763.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101]
          Length = 283

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 24/301 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           +H+PVL  ++I+ L   P  + LDAT G GG+++          V+A+D+D  A+   Q 
Sbjct: 2   NHIPVLSSELISGLVIRPRGLYLDATLGFGGHTKLILAAAPEVKVVAIDQDKQALDSSQT 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  Y        + F+       +   DG++ DLG++S+Q+D  +RGFSF+  G LDMR
Sbjct: 62  LLASYNSNIQFCHSNFADYD--PQNLKFDGILADLGINSVQLDTPERGFSFRHQGKLDMR 119

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    I+A+ ++N      L  I    GEE+ + RIA  I++ R      TT+    + 
Sbjct: 120 MNQQQTITAAKIINHWEEVKLANIFYTYGEERLSRRIARKIIESRPLE--TTTELAEVVA 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
               Y  +  RIHPATR FQALRI VN E+  L   L++A   LK GG + ++SFHSLED
Sbjct: 178 NCVPYKYRYGRIHPATRVFQALRIEVNQELSRLETFLKNAPHWLKIGGRIGIISFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK    + S                 + + +TKK + P   +VA N R+RSAKLR   
Sbjct: 238 RLVKHSLRNAS-----------------ILKVLTKKPIQPQDNEVAINPRARSAKLRLAE 280

Query: 316 R 316
           +
Sbjct: 281 K 281


>gi|224368376|ref|YP_002602539.1| S-adenosyl-methyltransferase MraW [Desulfobacterium autotrophicum
           HRM2]
 gi|263447343|sp|C0Q8N5|RSMH_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223691092|gb|ACN14375.1| MraW [Desulfobacterium autotrophicum HRM2]
          Length = 312

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 162/312 (51%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
              +H  V+  +V   L+  PG+  +D T G  G++ +          +I +D+D  A+ 
Sbjct: 1   MKFEHRSVMPREVRDGLDLKPGETCVDCTLGGSGHAVTSLAAVLPNGRLIGIDQDLDAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                  D     S+F   FS L   +     KGVDG++ DLG+S  Q+  G RGFSF+ 
Sbjct: 61  NAHRVFADDMANVSIFHDNFSHLPAILDSLGIKGVDGILLDLGLSLHQLRKGQRGFSFKG 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A+D+VN    + L  I    GEEK + +IA AIV++R SAP    
Sbjct: 121 DEPLDMRMDMRTALTAADLVNTLEERALVDIFFKYGEEKMSRKIARAIVRQRASAPITRN 180

Query: 189 QDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            +L+ +++  +        +IHPATR FQALRI VN E+E+L + L +    L  GG + 
Sbjct: 181 CELAEIVRAAIPAKIVHQQKIHPATRVFQALRISVNRELEQLERFLETFVDFLNPGGRIC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++SFHSLEDR+VK+ F +        R             +S+TK+ V+PT E++  N  
Sbjct: 241 IISFHSLEDRMVKRRFRALEQGCTCPRDFPECVCGFKPRLKSVTKRAVMPTPEEIEINPM 300

Query: 306 SRSAKLRAGMRT 317
           +RSA+LR   R 
Sbjct: 301 ARSARLRVAWRV 312


>gi|332160404|ref|YP_004296981.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664634|gb|ADZ41278.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 303

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 170/309 (55%), Gaps = 19/309 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +     
Sbjct: 1   MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 57

Query: 81  YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 58  TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L+ LI
Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKELADLI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 178 ANA-SPFREKHKHPATRSFQAIRIYINSELEEIERTLDGALEVLAPEGRLSVISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           R+VK F    S        +  + A          +S+ K  ++P   +VA N R+RS+ 
Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 295 LRFAERIKE 303


>gi|213158956|ref|YP_002320954.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057]
 gi|301345409|ref|ZP_07226150.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB056]
 gi|301596009|ref|ZP_07241017.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB059]
 gi|263433709|sp|B7IAX1|RSMH_ACIB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|213058116|gb|ACJ43018.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057]
          Length = 307

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +   + VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A + + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTADEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|302533959|ref|ZP_07286301.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C]
 gi|302442854|gb|EFL14670.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C]
          Length = 319

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 180/314 (57%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL P    PG V++D T G GG+S +         +I LDRD  A
Sbjct: 3   SESRHVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++ +L  A ++ L + + +     V G++FDLGVSSMQ+D  DRGF++
Sbjct: 63  LRLSGERLAPFGDRATLVHAIYADLAEVLDNLGLPAVQGILFDLGVSSMQLDEADRGFAY 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 123 AQDAPLDMRMDQTTGVSAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAIVREREKEPFS 182

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A   +  GG +
Sbjct: 183 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRI 242

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 243 AVLSYHSLEDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRR 302

Query: 306 SRSAKLRAGMRTVE 319
           +  A+ R   R  E
Sbjct: 303 AAPARFRGVERIRE 316


>gi|56750578|ref|YP_171279.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC
           6301]
 gi|81299784|ref|YP_399992.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC
           7942]
 gi|68565438|sp|Q5N4L0|RSMH_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123557084|sp|Q31PL4|RSMH_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56685537|dbj|BAD78759.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168665|gb|ABB57005.1| methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 296

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 161/309 (52%), Gaps = 24/309 (7%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           +   +   HV VL  +++  L P  G   LDAT G GG+S         + VI LDRDP 
Sbjct: 5   SSQPSSFHHVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEWPNTQVIGLDRDPA 64

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  Q  ++ Y ++       F+  Q    D+   G++ DLGVSS Q+D  +RGFSF++
Sbjct: 65  AIAASQTRLQLYSDRVQFQHVNFANYQ--PGDRRFQGIMADLGVSSPQLDEAERGFSFRQ 122

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +  ++A+ +VN+ +  DL  ++   GEE+ + RIA  IV+  Q    +T 
Sbjct: 123 DAPLDMRMDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVE--QRPFERTL 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +   ++        +  RIHPATR+FQALRI VN E++ L   L  A   L  GG + ++
Sbjct: 181 ELSEAIAGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGGRIALI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR++K                            IT+K ++P++ ++  N RSRS
Sbjct: 241 SFHSLEDRIIKHALRGDD-----------------RLTVITRKPLLPSEAEIESNPRSRS 283

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 284 AKLRIAERV 292


>gi|325829899|ref|ZP_08163357.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1]
 gi|325488066|gb|EGC90503.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1]
          Length = 318

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S         G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D + +  L +  F  + + +    V     V+FDLGVSS+QID   RGFSF++
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126

Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +GPLDMRM     +   ++++N     DLTRI+    +EK ASRIA   V+ RQ+AP +T
Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           ++ L  +I+  +  S +    HPA R+FQALRI VN E++ L  GL +A + L  GG L+
Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ FA  + +      +         +   +T+K V+PT E++  N R
Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAQK 317


>gi|317489854|ref|ZP_07948347.1| MraW methylase [Eggerthella sp. 1_3_56FAA]
 gi|316911009|gb|EFV32625.1| MraW methylase [Eggerthella sp. 1_3_56FAA]
          Length = 318

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S         G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D + +  L +  F  + + +    V     V+FDLGVSS+QID   RGFSF++
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126

Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +GPLDMRM     +   ++++N     DLTRI+    +EK ASRIA   V+ RQ+AP +T
Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           ++ L  +I+  +  S +    HPA R+FQALRI VN E++ L  GL +A + L  GG L+
Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ FA  + +      +         +   +T+K V+PT E++  N R
Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPACMCGKQPILDIVTRKPVLPTAEEIERNAR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAQK 317


>gi|302561117|ref|ZP_07313459.1| methylase MraW [Streptomyces griseoflavus Tu4000]
 gi|302478735|gb|EFL41828.1| methylase MraW [Streptomyces griseoflavus Tu4000]
          Length = 318

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A
Sbjct: 2   SQSRHVPVMLQRCLDLLAPALEGPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+ +L  A + +L D +         GV+FDLGVSSMQ+D   RGF++
Sbjct: 62  LRLSGERLAPFGERATLVHAVYDELPDVLGRLGIARAQGVLFDLGVSSMQLDEAGRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 122 AQDAPLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A KAL  GG +
Sbjct: 182 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALGVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPEQYQPRLKLLTRGAELPTEEEIAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R  E
Sbjct: 302 AAPARLRGAERIRE 315


>gi|256820422|ref|YP_003141701.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM
           7271]
 gi|256582005|gb|ACU93140.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM
           7271]
          Length = 304

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 157/313 (50%), Gaps = 17/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +++    H PVLL + I  LN       +D TFG GG+SR   K       + A D+D  
Sbjct: 1   MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   +      E+F+L Q  F  L+ Y+       VDGV+ D GVSS Q D  +RGFS
Sbjct: 61  ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+    +SA +VVN+    +LT I    GE K A  IA AI+  R+  P 
Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +   +L   ++  +   K N+     + +QA+RI VN EIE L   L      +K  G +
Sbjct: 176 RLGSELQEAVKALLPKFKENK--VLAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   ++ P   ++A N R
Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290

Query: 306 SRSAKLRAGMRTV 318
           +RSAKLR   R  
Sbjct: 291 ARSAKLRIAERLN 303


>gi|313901510|ref|ZP_07834958.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM
           13965]
 gi|313468223|gb|EFR63689.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM
           13965]
          Length = 383

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 123/310 (39%), Positives = 172/310 (55%), Gaps = 15/310 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
              H+PVLL +V+A L P  G   +D T GAGG++ +  +       ++ +DRDP A++ 
Sbjct: 63  TPRHIPVLLAEVLAYLQPERGGRFVDGTVGAGGHAAAILEAAGEAGRLLGIDRDPQALAL 122

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               +  + ++  L    F  L  +      K VDG++ DLGVSSMQ+D   RGFS+Q  
Sbjct: 123 AAARLAPFGDRVRLVHGDFRDLGRHLAAAGWKAVDGILLDLGVSSMQLDDPARGFSYQVD 182

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S   +A+D+VN A+   L R +   GEE+ A RIA  IV  RQ  P  TT 
Sbjct: 183 APLDMRMDPSQPVTAADLVNTASRDQLARWIAEYGEERWAGRIADFIVAARQRRPITTTL 242

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  V   ++    HPA R+FQALRI VNNE+E L   L+ A   L+ GG L+V+
Sbjct: 243 QLVEVIKDAVPARARRRGGHPARRTFQALRIAVNNELEGLEAFLQEAAGYLRPGGRLVVI 302

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK+ F + +   +  +         A F+ +T++ V P  E+   N R+RS
Sbjct: 303 SFHSLEDRAVKRAFRALAAPQVGGK-------EGAAFRILTRRPVTPGDEEERRNPRARS 355

Query: 309 AKLRAGMRTV 318
           AKLRA  R  
Sbjct: 356 AKLRALERVA 365


>gi|209559798|ref|YP_002286270.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes NZ131]
 gi|262827234|sp|B5XML3|RSMH_STRPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209540999|gb|ACI61575.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes NZ131]
          Length = 316

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + R   P + T +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  ++  N+R+ SA
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHSELTANKRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVAKKI 314


>gi|326388910|ref|ZP_08210492.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206510|gb|EGD57345.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 322

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 132/315 (41%), Positives = 189/315 (60%), Gaps = 11/315 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
                H+PVL+++V+  L   PG  ++D TFGAGGYSR+    G+ V A DRDP A++ G
Sbjct: 5   DATSPHIPVLIDEVLVALGAGPGMTMVDGTFGAGGYSRALVAAGARVHAFDRDPDAIAAG 64

Query: 75  QETMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +          Q  L    FS+L + + +   + VDGVVFD+GVSSMQ+D  +RGF+F  
Sbjct: 65  RLLAECAGEDPQLVLHHRRFSELAEGLAEAGVEQVDGVVFDIGVSSMQLDQANRGFAFSS 124

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM+  G SA+D +N A+   +  +L I GEE+Q+ RIA AIV  R   P  TT+
Sbjct: 125 DGPLDMRMAQEGPSAADFLNTADEAAIADVLYIYGEERQSRRIARAIVAAR---PLTTTR 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             + +++K + +       PATRSFQA+RI VN E++EL  GL +AE+ L  GG L VV+
Sbjct: 182 QFAEVVRKALGYRPGAPKDPATRSFQAVRIHVNGELDELTAGLAAAERVLAPGGRLAVVT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+F    +G V A    +P   +    VF+  +   + P +E++A N R+R
Sbjct: 242 FHSLEDRIVKQFLREAAGLVPAGSRHLPVLASTARPVFEKPSS-PIRPGEEELARNPRAR 300

Query: 308 SAKLRAGMRTVERSI 322
           SA LR  +R+   + 
Sbjct: 301 SATLRWAVRSDAPAR 315


>gi|332829620|gb|EGK02266.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 300

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 167/307 (54%), Gaps = 16/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+P LL + +  +N   G + +D TFG GG+S+          ++ A D+D  A++  Q
Sbjct: 2   YHIPALLHESVDGMNIRTGSICVDVTFGGGGHSKEILSHLGNKGHLYAFDQDEDAINNIQ 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131
           E       +F+  ++ F  L++++       VD ++ DLGVSS   D  DRGFSF+    
Sbjct: 62  E-----DSKFTFIRSNFRFLKNFIKYHGVEEVDAILADLGVSSHHFDAEDRGFSFRFEDS 116

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   G +A+ ++N    + L  I  + GE K + RIA AIVK R+  P++   D
Sbjct: 117 DLDMRMNQKAGKTAAQILNTYTEEQLADIFYLYGELKPSRRIASAIVKTRKEKPYRKVSD 176

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L   +   V   +  +   A ++FQALRI VN E+E L + L  A   LK GG L+V+++
Sbjct: 177 LLDTLNSFVGRGEKEKKVLA-QAFQALRIEVNEEMETLKEMLEQALDILKPGGRLVVITY 235

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK FF + + +    +    +   P  F+ I  KV+VP++E+   N RSRSAK
Sbjct: 236 HSLEDRLVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVIVPSREEEERNPRSRSAK 293

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 294 LRIAEKI 300


>gi|53803411|ref|YP_114850.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str.
           Bath]
 gi|115311584|sp|Q604V0|RSMH_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53757172|gb|AAU91463.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str.
           Bath]
          Length = 301

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L +V+ +L   P  + +D TFG GG+SR+  +       ++A+DRD  AV+    T   
Sbjct: 1   MLSEVLEMLAVRPDGIYVDCTFGRGGHSRAILERLGPEGRLLAIDRDLEAVAAAGATGLS 60

Query: 81  YKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS +  +V        VDG++ DLGVSS Q+D   RGFSF ++GPLDMR
Sbjct: 61  ADARFGIEHGRFSDVGRFVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMR 120

Query: 137 MSCSGISA-SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  +  ++ + + + ++L R+L   GEE+ A RIA A+V+ R+  P  TT DL  LI
Sbjct: 121 MDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRRPIVTTTDLVRLI 180

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  +   K+   HPATR+FQA+RI VN+E+ +L QGL  A + L AGG L+V+SFHSLED
Sbjct: 181 EAAI-PFKDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLAAGGRLVVISFHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+F    +        +  + + P +  ++  K +    +++  N R+RSA LRA  
Sbjct: 240 RIVKRFMRDEARGREMAGGIFETRSCPRL--AVLGKPLKAGDDEIRINPRARSALLRAAE 297

Query: 316 RTVE 319
           +   
Sbjct: 298 KRAA 301


>gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW [Herminiimonas arsenicoxydans]
 gi|263456141|sp|A4G8U6|RSMH_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|133739882|emb|CAL62933.1| S-adenosyl-dependent methyl transferase MraW [Herminiimonas
           arsenicoxydans]
          Length = 321

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 160/306 (52%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           H  VLLE+ +  L         + +D TFG GG+SR   +       ++A D+D  A++ 
Sbjct: 11  HRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIAN 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                           AT S          V+GV+ DLG+SS Q+D   RGFSF+  GPL
Sbjct: 71  AATIEDKRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRADGPL 130

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    GISA++ +     + + +++   GEE+ A +IA AIV  R   P  +T+ L+
Sbjct: 131 DMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTRQLA 190

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +     PATR+FQA+RIF+N E+EEL   L  A + L   G L+V+SFHS
Sbjct: 191 EIVARAVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVISFHS 249

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+F AS++      R +     +      + I +  + P+  +++ N R+RSA 
Sbjct: 250 LEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIAR--IKPSAAEISANPRARSAV 307

Query: 311 LRAGMR 316
           +R   R
Sbjct: 308 MRVAER 313


>gi|285019581|ref|YP_003377292.1| S-adenosyl-methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474799|emb|CBA17298.1| putative s-adenosyl-methyltransferase protein [Xanthomonas
           albilineans]
          Length = 333

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 172/311 (55%), Gaps = 7/311 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           A+ +    HVPVL  +V+  L      + LD TFG GG++R        G  ++ +D+DP
Sbjct: 11  AVSYPSAAHVPVLFAQVMDGLQVIENGIYLDGTFGRGGHARGVLHKLGPGGRLLVMDKDP 70

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++   E       + S+ + +F+ L  +     +DGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 71  EAIAEA-EHAFGGDARVSIRRGSFADLGHWDAATALDGVLFDLGVSSPQLDVAERGFSFG 129

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM    G SA+  + +A+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 130 KDGPLDMRMDPHAGESAAQWLARADEREIADVLWHYGEERQSRRIARAIVARRAEQPLTR 189

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI  TV    +++ HPATRSFQA+RI  N E+ +L  GL +A   LK GG L V
Sbjct: 190 TAQLAELI-ATVMPRGDSKTHPATRSFQAIRIHTNRELADLESGLDAALARLKPGGRLAV 248

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK F    +    + R +  +       + +    +    E++A N R+R
Sbjct: 249 ISFHSLEDRIVKHFMQRHAKAPPSNRRLPEAQTFVPALR-LHGGAIKADAEELAGNPRAR 307

Query: 308 SAKLRAGMRTV 318
           SA LR   +  
Sbjct: 308 SAVLRVAEKLA 318


>gi|264680254|ref|YP_003280164.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2]
 gi|262210770|gb|ACY34868.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2]
          Length = 309

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 168/310 (54%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL++ +  L       P    +DATFG GG+SR   +       +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +   +  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  EAARI---TDARFSIRHEGFRHLGELP-EGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+S     T   
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SFH
Sbjct: 183 LAQLVAGAVKTREAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P+  +V  N RSRSA +
Sbjct: 243 SLEDRIVKQFIAKHSKEV-YDRRAPFAPPAPMRLKALER--IKPSAAEVDANPRSRSAVM 299

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 300 RVAERTEVPA 309


>gi|218961102|ref|YP_001740877.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729759|emb|CAO80671.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas
           acidaminovorans]
          Length = 327

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 178/323 (55%), Gaps = 10/323 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           +  H PV++++ ++ LN   G + +DAT G GG+S +  K      +   D+D  A+   
Sbjct: 1   MTFHTPVMVKECLSYLNLRAGYIYVDATTGGGGHSLAMLKAQPEIKLYCFDQDSEAIEEA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + + +Y     L QA F QL+    Y   KG+DG++FDLGVSS Q++C +RGFSF+K  
Sbjct: 61  GKILHNYNN-VELIQANFKQLRTELAYRKIKGIDGILFDLGVSSHQLECTERGFSFEKDA 119

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   SA + VN+ + K LT I    GEE+ A RIA AI K  +  P +TT++
Sbjct: 120 PLDMRMDKNLKNSAYNAVNELDTKTLTNIFREYGEEQNAYRIAKAIEKSSK--PIKTTRE 177

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++          +    R FQALRI+VN E+E L+  L+ A   L   G ++V+S+
Sbjct: 178 LAKIVESIAGKGTKASLKTKVRVFQALRIYVNKELESLSLALQDAINLLNPQGRIVVISY 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F     K      +  SN  H      +TKK V  T+E++  N RSRSA
Sbjct: 238 HSLEDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQQLIILTKKPVTATEEEILVNPRSRSA 297

Query: 310 KLRAGMRTVERSIEDDSFVHLPR 332
           KLRAG +      E  +     R
Sbjct: 298 KLRAGEKVQREKRETKTSRKPNR 320


>gi|315223498|ref|ZP_07865354.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287]
 gi|314946533|gb|EFS98525.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287]
          Length = 304

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 156/313 (49%), Gaps = 17/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +++    H PVLL + I  LN       +D TFG GG+SR   K       + A D+D  
Sbjct: 1   MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   +      E+F+L Q  F  L+ Y+       VDGV+ D GVSS Q D   RGFS
Sbjct: 61  ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAQRGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+    +SA +VVN+    +LT I    GE K A  IA AI+  R+  P 
Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +   +L   ++  +   K N+     + +QA+RI VN EIE L   L      +K  G +
Sbjct: 176 RLGSELQEAVKTLLPKFKENK--VLAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   ++ P   ++A N R
Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290

Query: 306 SRSAKLRAGMRTV 318
           +RSAKLR   R  
Sbjct: 291 ARSAKLRIAERLN 303


>gi|15806866|ref|NP_295589.1| S-adenosyl-methyltransferase MraW [Deinococcus radiodurans R1]
 gi|20139273|sp|Q9RT99|RSMH_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6459646|gb|AAF11419.1|AE002026_7 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 312

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 168/312 (53%), Gaps = 18/312 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
            S        HVPVL  +++  L PAPGKV +D T G  G++R     G+ V  +D+DP+
Sbjct: 17  ESEASPPTFSHVPVLATEIVEALAPAPGKVFVDGTLGGAGHTRLLLGRGATVYGIDQDPY 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+   ++                ++L        VDG++ D+GVSS Q+D   RGFS+  
Sbjct: 77  ALDRARQAALPGLHVLQGNYRDMAELLPAAGVTQVDGILLDIGVSSFQLDDAGRGFSYHT 136

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             PLDMRMS SG SA+DVVN  +  +L  ++   GEE+ + RIA  IV+ R+ AP +TT 
Sbjct: 137 EAPLDMRMSQSGESAADVVNDLDETELAALIYEYGEERHSRRIARFIVQAREKAPIETTV 196

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I++      +  IHPA R+FQALRI+VN+E+  L  GL +AE  L  GG L V+S
Sbjct: 197 QLAEIIKRAYPGF-SKGIHPARRTFQALRIYVNDELGALRDGLSAAEGLLAPGGRLAVIS 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+F                      V   +TK+ +V  + +   N R+RSA
Sbjct: 256 FHSLEDRIVKRFLLGSD-----------------VLTPLTKRPIVAAESEQVDNPRARSA 298

Query: 310 KLRAGMRTVERS 321
           KLR G R     
Sbjct: 299 KLRVGERAAAPE 310


>gi|322436313|ref|YP_004218525.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9]
 gi|321164040|gb|ADW69745.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9]
          Length = 297

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 166/313 (53%), Gaps = 28/313 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T   HVPVLLE+ +  LN  PG V +DAT G GG+S +  K       +IA DRDP A+S
Sbjct: 2   TPQQHVPVLLEEALEYLNVRPGGVYVDATLGLGGHSSAIAKKLGGQGKLIAFDRDPDAMS 61

Query: 73  CGQETMRDYKEQ-------FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
             Q  +   KE+              FS+  D +    +DG++ D GVSSMQ+D   RGF
Sbjct: 62  KAQARLEALKEELGAEMPTVQFEPRAFSEAGDAIAKGSLDGLLADFGVSSMQLDEAHRGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM    G +A  VVN+ +  +L  ++   G   +  R         ++ P
Sbjct: 122 SFRSDGPLDMRMDTRSGETAGQVVNEEDENELADLIYEFG---EERRSRRIARAIVRARP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT +L+ +I       K ++IHPATR+FQA+R+ VN+E+ E+   L+SA   LK GG 
Sbjct: 179 ISTTAELARIISAAAPPMKGDKIHPATRTFQAIRMRVNDELGEIQSLLKSAGSLLKPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+++SFHSLEDRLVK  F                      F  +TKK V+  +++   N 
Sbjct: 239 LVMISFHSLEDRLVKDAFREL--------------GRDKKFTVLTKKPVIAAEQESLRNP 284

Query: 305 RSRSAKLRAGMRT 317
           RSRSAKLRA  + 
Sbjct: 285 RSRSAKLRALEKV 297


>gi|95930740|ref|ZP_01313473.1| methyltransferase [Desulfuromonas acetoxidans DSM 684]
 gi|95133220|gb|EAT14886.1| methyltransferase [Desulfuromonas acetoxidans DSM 684]
          Length = 318

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 179/313 (57%), Gaps = 9/313 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H  VL  + + LL+   G  +LD T G  G+SR   +       +I LDRD  
Sbjct: 1   MADNDFVHQSVLPTETLELLDLHAGDTVLDGTLGGAGHSRLILEATAPNGVLIGLDRDHD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++ G E +  Y ++  L  A F+     V +    G++G++ DLGVSS Q+D  +RGFS
Sbjct: 61  ALANGAEVLAAYGDRVILRHANFADANQVVEELGLDGLNGMLLDLGVSSYQLDQAERGFS 120

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM   G  +A+DVVN A V++LT I    GEE+ A RIA  I + RQ  P 
Sbjct: 121 FRADAPLDMRMDQQGDETAADVVNTATVEELTLIFKKYGEERWAGRIARRIERIRQQTPI 180

Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+ L+++TV   +   RIHPATR FQALRI VN+E++ +A+G+      LK GG+
Sbjct: 181 TTTFQLAELVKETVPGGRVPARIHPATRVFQALRIRVNDELDSVAKGVEQGIGLLKPGGV 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L V+SFHSLEDR+VK  F  R+   +    +   +    A  + +T++ V  ++ ++A N
Sbjct: 241 LAVISFHSLEDRIVKNIFRHRASPCVCPPRLPMCACGKKADVEVLTRRGVRASETEIAEN 300

Query: 304 RRSRSAKLRAGMR 316
            RSRSA LRA  R
Sbjct: 301 PRSRSAVLRAVRR 313


>gi|312795053|ref|YP_004027975.1| S-adenosyl-methyltransferase mraW [Burkholderia rhizoxinica HKI
           454]
 gi|312166828|emb|CBW73831.1| S-adenosyl-methyltransferase mraW (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 317

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 168/319 (52%), Gaps = 14/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+SA+    G H  VLL++ +  L      + +D TFG GG+SR+     +    +IA D
Sbjct: 1   MASAMEKP-GQHRTVLLDEAVDALITRADGIYVDGTFGRGGHSRAVLARLAPAARLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A+   +              A    +        V GV+ DLGVSS QID   RGF
Sbjct: 60  KDPQAIEVARGIADPRLNVVHGSFAQLRDVLAARGGVRVSGVLLDLGVSSPQIDDPARGF 119

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           SF+  GPLDMRM    G SA+  +   + ++L  ++   GEE+ A +IA AIV RR  + 
Sbjct: 120 SFRHDGPLDMRMDPTRGESAAQWLAHVDERELIEVIRDYGEERFAVQIAKAIVARRAESG 179

Query: 184 ---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
              P   T++L+ ++ + V   +     PATR+FQA+RI +N E+ EL   L +A ++L+
Sbjct: 180 RLGPIVRTRELAEIVARAVKT-REKGQDPATRTFQAIRIHINQELAELPVVLETALESLE 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQE 298
            GG L+V+SFHSLEDR+VK+FF S +      R +    ++      + + +  V   + 
Sbjct: 239 QGGRLVVISFHSLEDRIVKRFFQSHARAPAVDRRLPIRAADLPSPPLRILGR--VFAGEA 296

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           +VA N R+RSA +R   R 
Sbjct: 297 EVAANPRARSAVMRIAERV 315


>gi|299768536|ref|YP_003730562.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1]
 gi|298698624|gb|ADI89189.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1]
          Length = 307

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +     VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   + L  I+   GEE+ + RIA AI          TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKNA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         M          + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  E+
Sbjct: 296 LRVAERLEEK 305


>gi|238918670|ref|YP_002932184.1| S-adenosyl-methyltransferase MraW, [Edwardsiella ictaluri 93-146]
 gi|263447473|sp|C5B9E8|RSMH_EDWI9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238868238|gb|ACR67949.1| S-adenosyl-methyltransferase MraW, putative [Edwardsiella ictaluri
           93-146]
          Length = 313

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/317 (37%), Positives = 173/317 (54%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL++ +A LN     + +D TFG GG+SR           +IA+DRDP   
Sbjct: 2   SENFQHKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDP--- 58

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
                  +    +FS+    FS L DYV +      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 59  QAIAAAAQIDDPRFSIIHGPFSALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G+SA+  + QA   D+  +L   GEE+ A RIA AIV+R ++ P  
Sbjct: 119 MRDGPLDMRMDPSRGLSAAQWLMQAEEDDIAWVLKTFGEERFAKRIARAIVERNRTEPLS 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L++LI       K    HPATRSFQA+RI++N+E++E+ + L  A  AL   G L 
Sbjct: 179 RTRELAALISDA-SPFKEKHKHPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDRLVK+F    S      + +  + A          +++ K+  +P + +V 
Sbjct: 238 VISFHSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVV 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   R  
Sbjct: 296 DNPRARSSVLRVAERIA 312


>gi|307710487|ref|ZP_07646924.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564]
 gi|307618750|gb|EFN97889.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564]
          Length = 299

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 157/296 (53%), Gaps = 10/296 (3%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY--KEQFS 86
           L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+ +  Y  K   +
Sbjct: 2   LDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMVT 61

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GI 142
             +  F  LQ  + +   + +DG+ +DLGVSS Q+D  +RGFS++K  PLDMRM+    +
Sbjct: 62  FIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDASL 121

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +L+ +I+      
Sbjct: 122 TAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARDLKPIETTTELAEIIKSAKPAK 181

Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+ 
Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTKQL 241

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           F   S   +        +      + +++K ++P+ E++  N RS SAKLR   + 
Sbjct: 242 FKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSAKLRVARKI 297


>gi|262377037|ref|ZP_06070263.1| MraW methylase [Acinetobacter lwoffii SH145]
 gi|262308075|gb|EEY89212.1| MraW methylase [Acinetobacter lwoffii SH145]
          Length = 303

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 162/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + I  L         +D TFG GG++R         + V A D+DP A++   
Sbjct: 3   HISVLLHETIDALLAGRNTGTYVDGTFGRGGHTRLLLSKLDENARVYAFDKDPQALAVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F +  A+F+ L+D + +   + VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 63  E-LEQEDSRFKIIHASFADLKDALAELGIEHVDGVMADLGVSSPQLDQAERGFSFMKDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ + Q   + L  I+   GEE+ + RIA AI          TT  L
Sbjct: 122 LDMRMDNSQGPTAAEWLTQIEEEALANIIFKYGEERYSRRIAKAIKAA---GYIDTTAKL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + N+ H ATR+FQA+RI +N E+E++   L  A + LK    L V+SFH
Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEIFLPQAVEILKPEARLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + +++  V  + E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLEEDSGWGMPQQQKDTRRLKKVSR--VKASDEEVKANPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 296 LRVAERLA 303


>gi|313896117|ref|ZP_07829671.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975542|gb|EFR41003.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 310

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 152/306 (49%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HV VL  + +A L   P    +D T G  G++            +I +D+D  A++  Q 
Sbjct: 5   HVSVLPAETVAALAVVPEGTYVDCTLGGAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + SL    F  L   +  +    VDG++FDLGVSS QID   RGFS+ +  PL
Sbjct: 65  RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA  VVN+ +   LT I    GEE+ A RIA  I   R+  P +TT +L 
Sbjct: 125 DMRMDRRAVRSAHTVVNEYSAARLTEIFYTYGEERWAKRIAAFIEAARKERPIETTGELV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I + V    +    HPA R FQA+RI VN E+  L+  + +A  ALK GG L V++FH
Sbjct: 185 EIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILSDAVTAAVHALKPGGRLAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+     +   +   H       H    + I  K    +  + A N R++SAK
Sbjct: 245 SLEDRIVKRTMQQLARGCICPPHTPACICGHTPELRLI-GKAQTASLAECAVNARAKSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRVAEK 309


>gi|119897167|ref|YP_932380.1| S-adenosyl-methyltransferase MraW [Azoarcus sp. BH72]
 gi|263446774|sp|A1K3T8|RSMH_AZOSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119669580|emb|CAL93493.1| SAM dependent methyltransferase [Azoarcus sp. BH72]
          Length = 312

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 167/313 (53%), Gaps = 11/313 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           MS+ +      HV VLL + +  L   P  + +D TFG GG+SR+       G  +IA D
Sbjct: 1   MSAQLQ-----HVSVLLTEAVDALAIKPEGIYVDGTFGRGGHSRAVLARLGAGGRLIAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RDP A++ GQ       E      + F+ + D +    VDGV+ DLGVSS Q+D   RG 
Sbjct: 56  RDPAAIAAGQAIADPRLELVHAPFSEFAVVLDRLGVSAVDGVLLDLGVSSPQLDDASRGM 115

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM    G + ++ + +A+V ++T ++   GEE+ A  IA AI   R    
Sbjct: 116 SFRFDAPLDMRMDTSRGRTVAEWLAEASVAEITEVIRDYGEERFAYAIAKAIAAARTGGA 175

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+++++K V   +  + HPATRSFQALRIF+N E+EEL   L      L  GG 
Sbjct: 176 IATTGQLAAIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELTTVLPDCVARLSEGGR 234

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFN 303
           L+V+SFHSLEDR+VK+F    +        +    A     +  +  K   P + +VA N
Sbjct: 235 LVVISFHSLEDRIVKRFLRDEARPPQLPSRLPVRAADLPPPRLQLVGKAQRPGEAEVAAN 294

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 295 PRARSAVMRVAER 307


>gi|323341698|ref|ZP_08081931.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464123|gb|EFY09316.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 303

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 169/306 (55%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H+ V+L + I LLN  P  + +DAT GAGG+S   CK      +I  D+D  A+    +
Sbjct: 2   KHISVMLNETIELLNINPEGIYVDATLGAGGHSYEICKQLTTGRLIGFDKDLDAIERTSK 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ ++   +++QL + + +     VDGV+FDLGVSS Q D  +RGFS++    L
Sbjct: 62  RLEVFGDKVTMVHGSYTQLTEKLNELGIDEVDGVLFDLGVSSPQFDDAERGFSYRFDSRL 121

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   SA +VVN+   + L +IL    +E+ A RI   I    ++ P +TT +L 
Sbjct: 122 DMRMDQTQALSAYEVVNEYEEEHLVQILKDNSDERYARRIVKNI---IENRPVETTFELV 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI+++       + HPA ++FQALRI VNNE EE+   +  A   +K GG ++V++FHS
Sbjct: 179 ELIKRSYPGKDLKKGHPAKKTFQALRIEVNNEFEEVKDAVEQAVHVIKPGGRVVVITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK+ F++          +         ++ ++ K +  + E++ FN R+ SA LR
Sbjct: 239 IEDRIVKRIFSNYGKPKKVDPRLPIIEEQVLNYKLVS-KALKASTEELEFNNRAHSAILR 297

Query: 313 AGMRTV 318
              R  
Sbjct: 298 GIERVK 303


>gi|291440170|ref|ZP_06579560.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343065|gb|EFE70021.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 318

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL P    PG V++D T G GG+S +  +      ++ALDRD  A
Sbjct: 2   SQSRHVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+ +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSGERLAPFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 122 AQDAPLDMRMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A KAL   G +
Sbjct: 182 RSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R  E
Sbjct: 302 AAPARLRGAQRIRE 315


>gi|255326220|ref|ZP_05367306.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296]
 gi|255296674|gb|EET76005.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296]
          Length = 354

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 115/321 (35%), Positives = 175/321 (54%), Gaps = 15/321 (4%)

Query: 16  TIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALD 65
               HVPV+L++ I LL P             ++D T G GG+S +  +   N+  I +D
Sbjct: 33  ASERHVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGID 92

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           RD  A +   E +  + ++F    A + ++   +     +G+DG++ DLGVSSMQ+D   
Sbjct: 93  RDLQAHAIAGERLARFGDRFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERT 152

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++    PLDMRM+     +A  VVN+ +   L RI+   GEEK ASRIA AI   R 
Sbjct: 153 RGFAYSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARA 212

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +AP +TT +L  +IQK V  + +    HPA R+FQALRI VN+E+E L + + +A +AL 
Sbjct: 213 NAPLETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALN 272

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG  + +S+HSLED++VK+   + +         +    H    + IT+    PT E++
Sbjct: 273 LGGRFVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEI 332

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N R+ SAKLRA  +    +
Sbjct: 333 EQNSRAASAKLRAAEKIRIPA 353


>gi|120404503|ref|YP_954332.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1]
 gi|119957321|gb|ABM14326.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1]
          Length = 378

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/325 (35%), Positives = 175/325 (53%), Gaps = 18/325 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS-- 59
           S+A+      H+PVLL++ + LL PA         G  ++DAT GAGG+S  F       
Sbjct: 52  SAAMVDDEP-HIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPAL 110

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114
            +I LDRDP A+    + +  + ++ +L +  +  +   V +        D ++FDLGVS
Sbjct: 111 RLIGLDRDPDALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVS 170

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D  +RGF++    PLDMRM      +A+ V+N  + K L R+L + GEEK A RIA
Sbjct: 171 SMQLDRVERGFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIA 230

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGL 232
             IV+RR + PF TT +L  L+ + +    +    HPA R+FQALRI VN E+E L   +
Sbjct: 231 AQIVRRRANTPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAI 290

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
            +A + L+  G + V+++ SLEDR+VK  FA+ +         +    H   F ++T+  
Sbjct: 291 PAALEVLRPHGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGA 350

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
                E++  N RS S +LRA  + 
Sbjct: 351 ERADAEEIERNPRSASVRLRALEKV 375


>gi|237799282|ref|ZP_04587743.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022138|gb|EGI02195.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 313

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSEALERDLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMEALEVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    +        R++            I  K    +  +   N RSRS
Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDTETKANPRSRS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AVMRVAEK 311


>gi|293610699|ref|ZP_06692999.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827043|gb|EFF85408.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 307

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +     VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   + L  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S     +   +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDIGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|309812627|ref|ZP_07706371.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185]
 gi|308433322|gb|EFP57210.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185]
          Length = 323

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 9/320 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63
           M  +       HVPV+L +++  L P     G + +DAT G GG++ +  +       I 
Sbjct: 1   MEMSRGLAADRHVPVMLTEILDALAPSLERSGALYVDATLGMGGHTEAVLERFGEARAIG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           +DRD  A+    E +  + ++F    A  +++ D +P +  D ++FDLGVSS+Q+D  DR
Sbjct: 61  IDRDTEALRLAGERLARFGDRFEGVHAVNTEVADVLP-RPADAMLFDLGVSSLQLDELDR 119

Query: 124 GFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           GFS++   PLDMRM     G +A+DV+N A+  +L RIL   GEE+ A +IAHA+VK R+
Sbjct: 120 GFSYRADAPLDMRMDQTSDGPTAADVLNTASQDELERILKTYGEERFARKIAHAVVKERE 179

Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             P+ T+  L  +++  +   S+    HPA R+FQALRI VN+E+    Q + SA  +L 
Sbjct: 180 KQPWTTSGRLVEMLRSVIPLASQRQSGHPAKRTFQALRIEVNDELRGWEQAVTSALDSLA 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L V+SFHSLEDR+ K+ FA+ S         +    H   F  +T+   VP+++++
Sbjct: 240 VGGRLAVLSFHSLEDRITKRAFATASASTAPPGLPVELPQHRPEFALVTRGAAVPSEDEL 299

Query: 301 AFNRRSRSAKLRAGMRTVER 320
             N RS S +LR   RT  +
Sbjct: 300 ESNPRSASVRLRVIERTRAK 319


>gi|220927929|ref|YP_002504838.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10]
 gi|263447445|sp|B8I6G6|RSMH_CLOCE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219998257|gb|ACL74858.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10]
          Length = 313

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 161/313 (51%), Gaps = 11/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
               H  VLL++ I  LN     + +D T G  G+S    K       ++ LD+D FAV 
Sbjct: 1   MEFKHTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLGEKGCLVGLDQDSFAVE 60

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              + + + K    F +    F  ++          VDG++ DLGVSS Q+D   RGFS+
Sbjct: 61  TSIKRLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILLDLGVSSHQLDEASRGFSY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM+     SA DVVN+ + +D+ RI+   GEEK ASRIA  I + RQ+ P +
Sbjct: 121 QHDAPLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEEKWASRIAKFITEARQNEPVE 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT DL  +I+K V  S + +  HPA R+FQA+RI VNNE+  L + +      LK GG L
Sbjct: 181 TTYDLVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  +                +         I KK +V    ++  N 
Sbjct: 241 CIITFHSLEDRIVKMQYNKMVNPCTCPPAFPVCACGKKPKAVLINKKPIVSDIRELDKNP 300

Query: 305 RSRSAKLRAGMRT 317
           R+RSAKLR   + 
Sbjct: 301 RARSAKLRVLQKI 313


>gi|83319603|ref|YP_424368.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535772|sp|Q2SS95|RSMH_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83283489|gb|ABC01421.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 309

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 155/310 (50%), Gaps = 12/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H+PVLL++ I  LN     + +D T G  G++    K  S    + A+D+D  A+  
Sbjct: 1   MDKHIPVLLDESIKYLNIKLNGIYVDCTLGRAGHASEILKRLSQNGFLYAIDQDKTAIGQ 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +      F L Q  FS L           VDG+++DLGVSS Q+D G RGFS++  
Sbjct: 61  AKEKLEKISNNFFLIQGNFSNLSALLAINHIFSVDGILYDLGVSSPQLDIGSRGFSYRID 120

Query: 131 GPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           GPLDMRM  +    +A  ++NQ +   +  IL   GEE  A  IA  IV         T 
Sbjct: 121 GPLDMRMDITNNNLTADTIINQYSETQIEDILFKYGEESFAKSIAKKIV--LSRPINSTL 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           Q +  +           + HPA ++FQALRIF+NNE+  L   L+ A   L + G + V+
Sbjct: 179 QLVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALDLLNSKGRICVI 238

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLE+++VK  F S +   +     ++       + F+ + KK + P+  ++  N RS
Sbjct: 239 TFHSLEEKIVKNIFNSSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNHRS 298

Query: 307 RSAKLRAGMR 316
            SAKL    +
Sbjct: 299 HSAKLWVIEK 308


>gi|190571322|ref|YP_001975680.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018718|ref|ZP_03334526.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226709924|sp|B3CMB5|RSMH_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190357594|emb|CAQ55035.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995669|gb|EEB56309.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 294

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/303 (38%), Positives = 177/303 (58%), Gaps = 17/303 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H+PVLL++++  L+P  G + +DATFGAGGYS++  +     V A+DRD        + 
Sbjct: 2   THIPVLLKEMLLQLSPHSGGIYVDATFGAGGYSKAILESADCKVYAVDRDETVTKFYDDL 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              Y  +  LF   FS +++ +       ++G+VFD+GVSSMQ+D GDRGFSF + GPL+
Sbjct: 62  NVKYPNRIKLFIEKFSNIKNLLDSNNIKGINGIVFDVGVSSMQLDNGDRGFSFLRDGPLN 121

Query: 135 MRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           M M       AS  VN    +++   +   G E+ + RIA AIV  R+    +TT +L+ 
Sbjct: 122 MSMDNYSHMNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARKKKIIKTTFELAD 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L   G LIVV+FHSL
Sbjct: 182 IVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  F             +        F  + KKV+  + E++  N R+RSAKLRA
Sbjct: 241 EDRIVKTVFKD-----------LCEPGSTKTFSLLNKKVIKASSEEINVNPRARSAKLRA 289

Query: 314 GMR 316
             R
Sbjct: 290 IQR 292


>gi|170016882|ref|YP_001727801.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20]
 gi|263456317|sp|B1MXV5|RSMH_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169803739|gb|ACA82357.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20]
          Length = 313

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 160/308 (51%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + +ALL   P    +DAT G GG++    K      + + D+D  A+   Q 
Sbjct: 5   EHVTVLLHEAVALLAINPTGTYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIKYNQT 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  L    F QL+  + ++    VDG+V+DLGVSS+Q D G RGFS+    
Sbjct: 65  RYADEIAAGKLILIHQNFRQLKVALAEQHVTAVDGIVYDLGVSSVQFDDGQRGFSYNYDA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM      +A  +VN     D+ R+L   GE++   ++A  I + R   P  TT +
Sbjct: 125 ELDMRMDQRQTLTAKTIVNDWPFNDILRVLSRYGEDRFPKQVARKIEQHRDKGPINTTFE 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALR+ VN+E+  L   L  A + L   G + V++
Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQALELLAPSGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  ++        +          ++ +T+K ++P++ ++  N RS S
Sbjct: 245 FQSLEDRLVKQMFREKTSMPDLPAGLPVLPGQFEPDYKLLTRKPILPSETEMTDNHRSES 304

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 305 AKLRGIER 312


>gi|283458388|ref|YP_003363012.1| putative S-adenosylmethionine-dependent methyltransferase [Rothia
           mucilaginosa DY-18]
 gi|283134427|dbj|BAI65192.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Rothia mucilaginosa DY-18]
          Length = 354

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/321 (36%), Positives = 175/321 (54%), Gaps = 15/321 (4%)

Query: 16  TIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALD 65
               HVPV+L++ I LL P             ++D T G GG+S +  +   N+  I +D
Sbjct: 33  ASERHVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGID 92

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           RD  A +   E +  + E+F    A + ++   +     +G+DG++ DLGVSSMQ+D   
Sbjct: 93  RDLQAHAIAGERLARFGERFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERT 152

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++    PLDMRM+     +A  VVN+ +   L RI+   GEEK ASRIA AI   R 
Sbjct: 153 RGFAYSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARA 212

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +AP +TT +L  +IQK V  + +    HPA R+FQALRI VN+E+E L + + +A +AL 
Sbjct: 213 NAPLETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALN 272

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG  + +S+HSLED++VK+   + +         +    H    + IT+    PT E++
Sbjct: 273 LGGRFVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEI 332

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N R+ SAKLRA  +    +
Sbjct: 333 EQNSRAASAKLRAAEKIRIPA 353


>gi|114321350|ref|YP_743033.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|123127253|sp|Q0A6J4|RSMH_ALHEH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114227744|gb|ABI57543.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 317

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 157/306 (51%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG++            +  +DRDP A++  + 
Sbjct: 11  HRPVLLDEALDALAIRPHGVYVDGTFGRGGHAAGILARLGPEGRLWLVDRDPEAIAVARA 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   + ++    F +L   +        VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 71  RHGD-DPRCTIAHGRFDELPGRLEAAGLLHRVDGLLLDLGVSSPQLDSAERGFSFMREGP 129

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQD 190
           LDMRM    G++A + + Q + K L+R L   GEE+ + RIA A I  R   A  +TT  
Sbjct: 130 LDMRMDTSRGVTAREWLEQVDEKTLSRALRDYGEERHSRRIARALIRAREDGALPETTGA 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI + V        HPATRSFQALRI +N E+E L   L      L  GG L+V+SF
Sbjct: 190 LARLIAENVPGRPEPGKHPATRSFQALRIAINGELEALDALLERICDLLAPGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK++   +S        +  +            + + P + + A N R+RSA 
Sbjct: 250 HSLEDRRVKRYIRKQSTVGDLPPSVPVAPEALQPRLRSVGRALRPGEAEQAANPRARSAV 309

Query: 311 LRAGMR 316
           +R   R
Sbjct: 310 MRVAER 315


>gi|262373648|ref|ZP_06066926.1| MraW methylase [Acinetobacter junii SH205]
 gi|262311401|gb|EEY92487.1| MraW methylase [Acinetobacter junii SH205]
          Length = 306

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +   L      + +DATFG GG+++         + V A D+DP A+    
Sbjct: 3   HISVLLHETVDGVLAGRDTGIYVDATFGRGGHTKLLLSKLDQNARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ LQ  + +     VDGV+ DLGVSS Q+D  +RGFSF ++GP
Sbjct: 63  Q-LEQEDPRFKIIHASFADLQSELANIGITEVDGVMADLGVSSPQLDQAERGFSFMQNGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A++ + +   + L  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGPTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKQA---GELTTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A + LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINRELEDIEIFLPQAVELLKPKGQLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         M  +       + +++  +  ++ +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDTGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEKK 305


>gi|68565414|sp|Q5GW34|RSMH_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 337

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q++   RGFSF K
Sbjct: 61  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGK 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 297

Query: 309 AKLRAGMRTV 318
           A LR   +  
Sbjct: 298 AVLRVAEKLE 307


>gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
 gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 140/313 (44%), Positives = 191/313 (61%), Gaps = 6/313 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82
           ++E +IA + P      LD T GAGGY+R     G+  VI +DRDP A     +   +Y 
Sbjct: 1   MIEPLIAEVAPV-TGTWLDGTLGAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYG 59

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           ++  L +  FS++ DY  D  +DGVV DLGVSSMQ+D   RGFSFQK GPLDMRMS  G 
Sbjct: 60  DRLELVRGVFSKMDDYATD--LDGVVLDLGVSSMQLDQPMRGFSFQKDGPLDMRMSQEGE 117

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A+ +VN A+  DL  IL + GEE+ + RIA AIV+ R+ A   TT  LS +++K +   
Sbjct: 118 TAAHIVNSADEGDLADILFLYGEERASRRIARAIVRAREEAAIVTTLQLSEIVEKCLPRP 177

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           K  + HPATRSFQALRI VN+E  ELA+GL +AE+ALK GG L VV+FHS+EDR+VK+F 
Sbjct: 178 KPGQAHPATRSFQALRIAVNDEYGELAEGLAAAERALKPGGKLAVVTFHSIEDRMVKRFI 237

Query: 263 ASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
            SR G      RH   +      F  +++K    ++ ++  N R+RSA+LR   RT    
Sbjct: 238 QSRLGGAGRGSRHAPETIEVAPQFTQVSRKATSASEAEIDRNPRARSARLRVATRTDAPP 297

Query: 322 IE-DDSFVHLPRL 333
              D   + +P+L
Sbjct: 298 APLDRRAIGMPQL 310


>gi|301510055|ref|ZP_07235292.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB058]
          Length = 307

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTIGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +   + VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|329115569|ref|ZP_08244291.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter
           pomorum DM001]
 gi|326694997|gb|EGE46716.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter
           pomorum DM001]
          Length = 335

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 134/325 (41%), Positives = 186/325 (57%), Gaps = 18/325 (5%)

Query: 9   MSS----AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIA 63
           M++        T   H+PV+L +V+  L PA G  ILD TFG GGYS +  K    NV  
Sbjct: 1   MNALSAFTPPETAQGHIPVMLPEVLEYLYPADGGRILDCTFGGGGYSSAILKSADCNVWG 60

Query: 64  LDRDPFAVSCGQETMRDYK-----EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115
           +DRDP A++ GQ   R +       +  + Q +F  +Q           DG+V DLGVSS
Sbjct: 61  IDRDPDAIARGQALSRHFPAANGTSRLHMLQGSFGNMQALASAAGISTFDGIVLDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
            Q+D  DRGFSF+  GPLDMRM  SG SA+D+VN+A   +L  I    GEE+ A R+A A
Sbjct: 121 FQLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARA 180

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +V  R   PF+TT  L++L++  +   + + I  ATR+FQ LRI VN+E+ E+ +GL  A
Sbjct: 181 VVNARSEMPFETTTQLANLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQA 239

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKK 291
              L  GG L+VVSFHSLEDR+ K+     +GK  +     P    + A  A F ++T K
Sbjct: 240 LDMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPEADFVALTHK 299

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
              PT  + ++N R+RSA+LRA M+
Sbjct: 300 ARRPTDTECSYNPRARSARLRAVMK 324


>gi|291288111|ref|YP_003504927.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885271|gb|ADD68971.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM
           12809]
          Length = 308

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+PV++ +V+  L   P  + LD T G GG+S +  +       ++ LDRD  AV+  +
Sbjct: 2   KHIPVMIREVLKYLPVDPDGITLDMTGGGGGHSAAMLEKISLKGRLVILDRDLDAVARLK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  +      ++  + FS     + +     V  V+ D GVS   +   +RGFSF+  GP
Sbjct: 62  ERFKGTPN-VTIAHSNFSDFDRVLGELGISSVTSVLADFGVSLYHLKVAERGFSFRSEGP 120

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA+DVVN  + ++L+ I+   GEE  A  IA AI + R+    +TT  L
Sbjct: 121 LDMRMNQDDTLSAADVVNSYSRENLSSIIKKYGEENFAWNIAGAIERAREVEKIETTTRL 180

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + ++   V    +   I+PAT++FQALRIFVN+E++ + + L   E  +  GG +  +SF
Sbjct: 181 AEIVASAVPRKAQKPGINPATKTFQALRIFVNSELDSIEEMLGKLENYVDEGGRVAFISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F     + +    +   + +    F+ IT+K + P ++++  N  SRSA
Sbjct: 241 HSLEDRIVKDAFREFEKECVCPPELPVCNCSKVRTFRQITRKPLEPREDELEMNPLSRSA 300

Query: 310 KLRAGMRT 317
           K+R   R 
Sbjct: 301 KMRVAERV 308


>gi|167838012|ref|ZP_02464871.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis
           MSMB43]
          Length = 313

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 166/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSEAGRLIAFDKDPRAIETAKG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IADARFEIVHDSFAAMKGALDARGVARVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + + +  + P+  +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERIA 312


>gi|295135641|ref|YP_003586317.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87]
 gi|294983656|gb|ADF54121.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87]
          Length = 298

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 168/307 (54%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVLL++ +  LN  P  V +D TFG GG+SR   K       + A D+D  A+  
Sbjct: 1   MEYHNPVLLKESVDGLNIKPDGVYVDVTFGGGGHSREILKRLGEHGKLFAFDQDTDALQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                +    +F+L    F  L+ ++       VDG++ D GVSS Q +  +RGFS + +
Sbjct: 61  -----KIEDPRFTLINENFRFLKRFLRFYGVKKVDGILGDFGVSSHQFNEAERGFSTRFN 115

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   + +SA  V+N+ + + L  +     + K A ++A  IV  R++ P + ++
Sbjct: 116 AKLDMRMDQSNSLSAYQVINEYDEEQLKSLFYQYADLKNAPKLARIIVSERKNKPIENSE 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL+ L++  ++  K N+I    + +QA+RI VN EIE L + L   E  ++  G + ++S
Sbjct: 176 DLNELLKPHLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEDLVEKNGRISLIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK++  S   +    +    + + P  F+ +   ++VP++++++ N R+RSA
Sbjct: 234 YHSLEDRLVKRYIRSGLFEGEPEKDFYGNISVP--FKKV-GGLIVPSKQEISENNRARSA 290

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 291 KLRIAKK 297


>gi|193214541|ref|YP_001995740.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC
           35110]
 gi|263446020|sp|B3QWS9|RSMH_CHLT3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193088018|gb|ACF13293.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC
           35110]
          Length = 321

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 20/321 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRD 67
           +   H PVLLE+ +  L  +   + +DAT G  G+S+                +I +DRD
Sbjct: 2   SDFYHKPVLLEESVHWL-VSESGMYIDATLGGAGHSKEILHRLETQHLLSNSLLIGIDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY--------VPDKGVDGVVFDLGVSSMQID 119
             A+      +  Y     + +  F+ L+            +  + G++ DLG+SS QID
Sbjct: 61  ANAIRAATTRLATYAAHAHILRGRFADLKLLLETNGLLDSGNHPIRGILLDLGISSHQID 120

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSFQ+SGPLDMRMS +  ++A++VVN  + + L++I    GEE++A  IA  IV+
Sbjct: 121 APARGFSFQQSGPLDMRMSDTAQLTAAEVVNHYDERSLSKIFFDYGEEREAKWIARKIVE 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  P +TT  L+ LI++ +       +     R FQA+RI VN E++EL   L++A +
Sbjct: 181 ARKQTPLETTAALALLIRQNLNRKSPVEQTKTLARIFQAIRIEVNGELDELKAVLQAAHE 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296
            L   G L+V+S+HSLEDR+VK+FF   + +    + ++       A  + +TKK V+ +
Sbjct: 241 VLSEKGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIKTATMKILTKKPVLAS 300

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           +E++  N R+RSAKLR   + 
Sbjct: 301 EEEIQENSRARSAKLRVAEKI 321


>gi|167586011|ref|ZP_02378399.1| S-adenosyl-methyltransferase MraW [Burkholderia ubonensis Bu]
          Length = 313

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 164/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRAVLARLGAAGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+            V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFAIVHDSFASMQGALAARGIGKVSGVLLDLGVSSPQVDDPQRGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I +K   P+  +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGRKF--PSDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|282902029|ref|ZP_06309927.1| methyltransferase [Cylindrospermopsis raciborskii CS-505]
 gi|281193116|gb|EFA68115.1| methyltransferase [Cylindrospermopsis raciborskii CS-505]
          Length = 299

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 159/311 (51%), Gaps = 24/311 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           + ++     H+PVL E++I  L    G   LD T G GG+SR   +    + V+A+D+D 
Sbjct: 9   TPLNQFTFSHIPVLGEELIRGLTIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 68

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+   +  + ++ ++       F+      P    DG++ DLGVSS  +D   RGFSF+
Sbjct: 69  DALKAAKINLSEFGDRVDFLHTNFANFP--FPPNTYDGILADLGVSSYHLDNPVRGFSFR 126

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM+     +A+D+VN  N ++LT I    GEE+ + +IA  I++        T
Sbjct: 127 NTANLDMRMNQQQSLTAADIVNGWNEQELTHIFFHYGEERLSRKIARRIIE--NRPFSTT 184

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+   S+        +  RIHPATR FQALR+ VN+E++ L   L  A  +L  GG + +
Sbjct: 185 TELAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIAL 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK    +                   +   +TKK +  T+ ++  N RSR
Sbjct: 245 ISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATESEIQHNPRSR 287

Query: 308 SAKLRAGMRTV 318
           SAKLR   +  
Sbjct: 288 SAKLRIAQKVA 298


>gi|212213353|ref|YP_002304289.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuG_Q212]
 gi|263447408|sp|B6J2R7|RSMH_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212011763|gb|ACJ19144.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 307

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 11/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H PVL ++V+  L   P  + +D TFG GG+S    +       ++A+D+DP AV+ 
Sbjct: 1   MEAHKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + + +   + S+   TF+ LQ    D   +  V+G++ D+GVSS Q++   RGFSF K
Sbjct: 61  ENKALFE-DARLSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   T
Sbjct: 120 DGPLDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           Q+LS ++ K  Y  +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+
Sbjct: 180 QELSDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK+F    S   +     I +       + +   ++ PT+ ++  N R+RS
Sbjct: 239 SFHSLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPL-GSLIRPTEAEIKKNPRARS 297

Query: 309 AKLRAGMR 316
           A+LR   +
Sbjct: 298 ARLRIVEK 305


>gi|83312939|ref|YP_423203.1| S-adenosyl-methyltransferase MraW [Magnetospirillum magneticum
           AMB-1]
 gi|123540765|sp|Q2W0I1|RSMH_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82947780|dbj|BAE52644.1| S-adenosyl-methyltransferase mraW [Magnetospirillum magneticum
           AMB-1]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 130/298 (43%), Positives = 179/298 (60%), Gaps = 8/298 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PVLL +VIA L P    V LD TFGAGGYSR+        V A+DRDP AV+ G+ 
Sbjct: 4   QPHIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILAASACRVWAIDRDPTAVARGKL 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+ +  F  +   +  +    VDG+  D+GVSSMQID  +RGFSF K GPL
Sbjct: 64  LEEGSAGRFSMIEGRFGDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGPL 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D+VN     +L  I+   GEE+ + R+A AIV+ R+   F+ T +L+ 
Sbjct: 124 DMRMETKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFERTGELAE 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++K V  S  + I PATR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FHSL
Sbjct: 184 VVRKVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVVTFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           EDR+VK F  +RSG+       +P        A F  +++K + P  ++   N R+RS
Sbjct: 243 EDRVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSRKAIGPAPDEARANPRARS 300


>gi|254391587|ref|ZP_05006786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|294812140|ref|ZP_06770783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705273|gb|EDY51085.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324739|gb|EFG06382.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/314 (40%), Positives = 182/314 (57%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL PA   PG V++D T G GG+S +         +IALDRDP A
Sbjct: 2   SNTRHVPVMLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  Y E+ +L  A + +L   +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSAERLAPYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R + PF 
Sbjct: 122 AQDAPLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFS 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           T+  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A  AL   G +
Sbjct: 182 TSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT ++VA NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R  E
Sbjct: 302 AAPARLRGAQRIRE 315


>gi|241668885|ref|ZP_04756463.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877417|ref|ZP_05250127.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843438|gb|EET21852.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 305

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ IA LN  P  + +DATFG GG+S++         +IA D+D  A+     
Sbjct: 1   MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +   + F +  A+F+ + DY         VDG++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 61  NFQ--NDNFEIVHASFTYIYDYCLQHNLLGEVDGIIMDLGVSSPQLDNANRGFSFTHDGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++AS  + + +V +LT I  + GEE+ A +IA  I          TT   
Sbjct: 119 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKDYIAENGSITTTHQ 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + + +     K  + +PATR FQALRI+VN+E+++L   L S    +K GG +  +SFH
Sbjct: 179 LAELIRAT-IGKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F S             M+P +      + ITKK     Q++++ N RSRS
Sbjct: 238 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSRS 296

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 297 AILRVVEK 304


>gi|121606314|ref|YP_983643.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans
           CJ2]
 gi|262824843|sp|A1VSU4|RSMH_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120595283|gb|ABM38722.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans
           CJ2]
          Length = 306

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 171/313 (54%), Gaps = 11/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +      H  VLL + I  L   P    +DATFG GG+SR           V A D+D  
Sbjct: 1   MVKGTWTHRTVLLNEAITALQVNPDGHYIDATFGRGGHSRLLLSQLSALGRVTAFDKDLD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  Q        +FS+    F  L   +P   V GV+ DLGVSS QID  +RGFSF+ 
Sbjct: 61  AIAEAQSI---DDPRFSIRHQGFMHLDQ-MPQASVAGVLMDLGVSSPQIDNPERGFSFRN 116

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G S ++ +  A+++ +T ++   GEE+ A  +A AI +RRQ      T
Sbjct: 117 EGPLDMRMDTTRGQSVAEWLQDASIEAMTEVIRDYGEERFAGLVARAIDRRRQEHGPLQT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
               + +  +   ++     PATR+FQALRIF+N E+EEL Q L+++ K L+ GG L+V+
Sbjct: 177 TAELADVVASAVKTREPGKDPATRTFQALRIFINAELEELQQALQASLKVLQPGGRLVVI 236

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A+ S +V   R    +       +++ +     ++E+VA N RSRS
Sbjct: 237 SFHSLEDRIVKQFIAAHSREV-YDRRAPFAAPKVMQLKALGR--TKASEEEVAGNPRSRS 293

Query: 309 AKLRAGMRTVERS 321
           A +R   RT E +
Sbjct: 294 AVMRVAERTGEAA 306


>gi|300112935|ref|YP_003759510.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113]
 gi|299538872|gb|ADJ27189.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113]
          Length = 318

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 174/318 (54%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M      +   H PVLL +VI  L      + +D TFG GG++++          ++ +D
Sbjct: 1   MDKNKTSSSHQHQPVLLREVIQALAIRRDGIYIDGTFGRGGHAQAILAALSSEGRLLGVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           +DP         +     +F++ QA+   L   V +    + ++G +FDLGVSS Q++  
Sbjct: 61  KDPA-AIAAGHALAQKDGRFTIVQASIGDLARVVSERGWLRKINGALFDLGVSSPQLENA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GPLDMRM+ + G SA++ +  A  K++  +L + GEE+   RIA AI++ R
Sbjct: 120 ERGFSFLQDGPLDMRMNPAVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQAR 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                  T+ L+ ++ K +   +  RIHPATRSFQA+RIF+N+E+EEL   L  A  AL 
Sbjct: 180 GLNSLTRTKQLAEVVAKAIPRWER-RIHPATRSFQAIRIFINHELEELRAALEQALAALA 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQE 298
             G L V+SFHSLEDR+VK+FF  ++        +         A  + +  K + P  E
Sbjct: 239 VKGRLAVISFHSLEDRIVKRFFREKARGEDLPLDLPVMQEDFQQASLKVL-GKPIWPVPE 297

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N R+RSA+LR   +
Sbjct: 298 EIAHNPRARSARLRVAEK 315


>gi|92114320|ref|YP_574248.1| methyltransferase [Chromohalobacter salexigens DSM 3043]
 gi|123265653|sp|Q1QVF9|RSMH_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91797410|gb|ABE59549.1| methyltransferase [Chromohalobacter salexigens DSM 3043]
          Length = 331

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 168/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL+  +  L   P    LD TFG GG+SR+  +       ++A+DRDP A++ G  
Sbjct: 28  HASVLLDGAVEALMTDPDGCYLDGTFGRGGHSRAILQRLSPQGRLLAIDRDPAALAEGAT 87

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG----VVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+L    F++L D   D  +      V+ D+GVSS Q+D   RGFSF + GP
Sbjct: 88  W---DDPRFTLRHGRFAELDDIARDAALHRRLSGVLLDVGVSSPQLDDASRGFSFLRDGP 144

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA+D + + + +D++ +    GEE+ A RIA AIV RR   P   T DL
Sbjct: 145 LDMRMDPTQGESAADWLARVSERDMSDVFKRYGEERFARRIAKAIVARRGERPITHTADL 204

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      +  + HPATR FQA+RI VN E+++L   L +A ++L  GG L+V+SFH
Sbjct: 205 AELVKAAHPAWEKGK-HPATRVFQAIRIHVNGELDQLEAALAAALESLAPGGRLVVISFH 263

Query: 252 SLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+F   +        R +   +       ++  K   P ++++A N R+RSA 
Sbjct: 264 SLEDRLVKRFIRDKVRGDTHLPRDLPIRDTQLNRRLAMVGKARRPDEDEIALNPRARSAV 323

Query: 311 LRAGMR 316
           +R   +
Sbjct: 324 MRVAQK 329


>gi|263460310|sp|A4TBF6|RSMH_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 317

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             HVPVLL++ + LL P     G  ++DAT GAGG+S  F        +I LDRDP A+ 
Sbjct: 5   QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+  
Sbjct: 65  IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 124

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT
Sbjct: 125 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 184

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  L+   +    +    HPA R+FQALRI VN E+E L   + +A +AL+  G L V
Sbjct: 185 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++ SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS 
Sbjct: 245 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 304

Query: 308 SAKLRAGMRT 317
             +LRA  + 
Sbjct: 305 PVRLRAVEKV 314


>gi|126729243|ref|ZP_01745057.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37]
 gi|126710233|gb|EBA09285.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37]
          Length = 330

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 135/320 (42%), Positives = 190/320 (59%), Gaps = 12/320 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76
             HVPVLL  ++  + P    V +D TFGAGGY+R   + G+  VI +DRDP A      
Sbjct: 11  APHVPVLLAPLLREVAPVR-GVWIDGTFGAGGYARGLVEAGAERVIGIDRDPLAHEMAAA 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + D+    SL +  F  +         DGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 70  WLDDWP-AISLVRENFCNMDKV--ADSADGVVLDLGVSSMQLDLAERGFSFMRDGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G +A+D+VN  +  +L  +L + GEE+Q+ RIA  I    +  PF TT +L+ LI+
Sbjct: 127 MGQAGPTAADLVNDLSESELADVLYVYGEERQSRRIARRI---VEHRPFLTTLELAGLIE 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           +T+  +K  + H ATRSFQALRI VN E E L QGL +AE+ LK GG+L VV+FHS+EDR
Sbjct: 184 RTIGRTKPGQAHAATRSFQALRIAVNGEYEALWQGLMAAERVLKPGGMLAVVTFHSVEDR 243

Query: 257 LVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F      +   V R+   +    A F+ +T+K V P ++++  N R+RSAKLR   
Sbjct: 244 MVKRFLQLHGDRKRHVNRYATETPEAEAPFEIVTRKAVGPDKDELTANPRARSAKLRVAR 303

Query: 316 RT---VERSIEDDSFVHLPR 332
           RT    E    D+  + + +
Sbjct: 304 RTDLPAEAVAADEIAMPMLK 323


>gi|194246838|ref|YP_002004477.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali]
 gi|262824840|sp|B3R0Q2|RSMH_PHYMT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193807195|emb|CAP18636.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali]
          Length = 300

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 170/304 (55%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H+PVL ++V+  LN     + +DAT G GG+S    +      + A D+D FA+   ++
Sbjct: 4   NHIPVLPKEVLKYLNVKSSGIYVDATLGGGGHSELILEKLKKGFLYAFDQDIFAIKQSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   +  L  + F  L+  +       VDG++FDLG+SS QID  +RGFS+  +  L
Sbjct: 64  LFAN-NHKIELIHSNFFFLKQELNKRGVFFVDGIIFDLGLSSFQIDDKERGFSYLSNEFL 122

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A  ++N  + + L  I    G+EK +S IA  I+K+R   P  TT +L 
Sbjct: 123 DMRMDREQKLTAHYIINNYSFEKLRNIFFNFGQEKNSSLIAAEIIKKR---PLNTTFELV 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +  K   F+ N + H + + FQALRI VN E+E L + L      LK G  ++V+SFHS
Sbjct: 180 EIADK---FNYNRKGHSSKKIFQALRIEVNKELELLQKTLHQCLSLLKEGSSIVVISFHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK FF + S  +     +   +    V + ITKKVV P+ E++AFN RSRSAKLR
Sbjct: 237 LEDRLVKNFFRANS-IINLPTKLPIVSNFKTVLKIITKKVVKPSLEEIAFNHRSRSAKLR 295

Query: 313 AGMR 316
           A ++
Sbjct: 296 AAVK 299


>gi|308048060|ref|YP_003911626.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799]
 gi|307630250|gb|ADN74552.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799]
          Length = 315

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 164/314 (52%), Gaps = 13/314 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H+ VLL++ +  L   P  + +D TFG GG+SR           +I +DRDP   
Sbjct: 2   SESFRHITVLLDEAVNGLQLKPDGIYVDGTFGRGGHSRHILSQLGPNGRLIGIDRDPQ-A 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
               + +     +F +    FS + +YV        +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 61  VAVAQQLAAEDPRFQIVHGPFSGIAEYVEALGLTGQIDGVLLDLGVSSPQLDDAERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAP 184
            + GPLDMRM    G +A++ + +A   D+  +L   GEEK A  IA  IV+        
Sbjct: 121 LRDGPLDMRMDNSRGETAAEWLARAEANDIAWVLKTFGEEKFARPIARKIVEHIAAGEPM 180

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +T+     + + T    ++   HPATRSFQA+RI++N+E+EE+ + L  A +ALK GG 
Sbjct: 181 DRTSHLAGLIEKMTPKHKRDQGKHPATRSFQAIRIYINSELEEIEKALMGALEALKPGGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302
           L V+SFHSLEDRLVK+F    S        +  +       + +    K + P+  +V  
Sbjct: 241 LSVISFHSLEDRLVKRFMRRESQGEPVPHGLPLTEEQMKQTRRLKTVGKALKPSDTEVED 300

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR G +
Sbjct: 301 NTRARSSVLRVGEK 314


>gi|190572794|ref|YP_001970639.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           K279a]
 gi|262826755|sp|B2FNN0|RSMH_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190010716|emb|CAQ44325.1| putative S-adenosyl-methyltransferase mraW [Stenotrophomonas
           maltophilia K279a]
          Length = 322

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 180/314 (57%), Gaps = 8/314 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  +   H+PVL  +V+  L        LD TFG GG++R           ++ +D+DP 
Sbjct: 12  VSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPE 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           A++  +        + S+F+ +F+QL  +    +G+DGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 72  AIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFG 130

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM    G SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF  
Sbjct: 131 KDGPLDMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFSR 190

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ LI  +V     ++IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L V
Sbjct: 191 TAELAELI-ASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAV 249

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK++    +    A R +  + A       I    +  T E++A N R+R
Sbjct: 250 ISFHSLEDRIVKQYMNRLAKAPPANRRLPEAVAFVPTLDLI-GGAIKATDEELAANPRAR 308

Query: 308 SAKLRAGMRTVERS 321
           SA LR   +    +
Sbjct: 309 SAVLRVAQKREADA 322


>gi|126726611|ref|ZP_01742451.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2150]
 gi|126703940|gb|EBA03033.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2150]
          Length = 317

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/318 (42%), Positives = 183/318 (57%), Gaps = 9/318 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
             HVPVLL  +IA   P      LD TFGAGGY+R+    G++ VIA+D+DP      + 
Sbjct: 4   APHVPVLLRPIIAKTAPIS-GTWLDGTFGAGGYTRALLDAGADTVIAVDQDPLVFDMAKS 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +Y  +     + F+ L     +  +DG+V DLGVSSMQID  +RGFSF + GPLDMR
Sbjct: 63  WADEYGARLVPVASNFADLDKAGQN--LDGIVLDLGVSSMQIDQAERGFSFMQDGPLDMR 120

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG +A+D+VN A   +L  IL   GEE+ + RIA AI+  R      T + ++++ +
Sbjct: 121 MSQSGPTAADLVNTATEAELADILFQYGEERASRRIAKAIIAAR--PLNTTAELVAAITE 178

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             V   K  + HPATRSFQALRI VN+E+  L +GL +AE+AL   G L VV+FHSLEDR
Sbjct: 179 --VAPVKKGQSHPATRSFQALRIAVNDELGALIRGLEAAERALAPNGWLAVVTFHSLEDR 236

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F  SRS      R+     +    F+   +K +    E+VA N R+RSA LR   R
Sbjct: 237 IVKRFLQSRSAISQGSRYAPEQKSAAPTFELQGRKAIKADDEEVAANPRARSASLRLAKR 296

Query: 317 TVERSIEDD-SFVHLPRL 333
           T   +   D   + LP L
Sbjct: 297 TTAAARPSDWGKLGLPGL 314


>gi|74316129|ref|YP_313869.1| methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|88909225|sp|Q3SMI1|RSMH_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|74055624|gb|AAZ96064.1| methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 311

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 169/308 (54%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL ++ +A L   P  V +DATFG GG+SR           ++ALDRDP   +    
Sbjct: 5   HVPVLAQEAVAALAIKPEGVYVDATFGRGGHSRMILARLGTLGRLVALDRDP---AAIAA 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + +L Q+ FS+L   +       VDG++ D+GVSS Q+D   RGFSF+   PL
Sbjct: 62  GAALDDPRLTLRQSEFSRLGKVLDALGIARVDGILLDIGVSSPQLDDAARGFSFRFDAPL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SGISA+D +  A  ++++ ++   GEE+ A  IA A+V  RQ     +T  L+
Sbjct: 122 DMRMDPGSGISAADWLATAEEEEISEVIRTYGEERFAKPIARALVAARQKEAITSTAQLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   V   +  + HPATRSFQA+RI++N E+EEL   L    + L+AGG L V+SFHS
Sbjct: 182 GIIAAAVKKREPGQ-HPATRSFQAIRIYLNRELEELKAVLPQCVERLRAGGRLAVISFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F  + S    A   +    A     +  +  +    +  +VA N R+RSA L
Sbjct: 241 LEDRIVKRFLRTESLGEQAPPRLPIPAAMLKAGRLRLVGRAQHASDAEVAANPRARSAVL 300

Query: 312 RAGMRTVE 319
           R   R  E
Sbjct: 301 RVAERVAE 308


>gi|237756569|ref|ZP_04585091.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691269|gb|EEP60355.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 293

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 176/308 (57%), Gaps = 22/308 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           + +H  VL  +V+       G + +DAT G GG+S    K      +I LD+D FA+   
Sbjct: 1   MVEHYSVLHREVLEFSKLVAGGIFVDATVGGGGHSYLILKQNPNLKLIGLDKDDFALKVA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +++++++ +L +++F  L   +     + ++G++FD GVS+ Q+   +RGFSFQ+  
Sbjct: 61  KERLKEFEDRITLLKSSFKDLDKVLQSLQIREINGILFDFGVSTFQLKL-ERGFSFQREE 119

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   +A DVVN    +DL  I+   GEEK AS+IA +I + R+    +TT++
Sbjct: 120 FLDMRMDTTQKLTAYDVVNYYREQDLYNIIKTYGEEKFASKIAKSIAEYRKKKKIETTKE 179

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++ +    + ++ +IHPATR+FQA+RI VNNE++++ +GL  A   L   G ++ +S
Sbjct: 180 LADIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGTIMAIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  F                       + +TKK + P+ E++  N  SRSA
Sbjct: 240 FHSLEDRIVKNTFKKY--------------KELKFLEILTKKPITPSDEEIKENPASRSA 285

Query: 310 KLRAGMRT 317
           KLR G R 
Sbjct: 286 KLRVGRRI 293


>gi|297559864|ref|YP_003678838.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844312|gb|ADH66332.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 357

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/323 (34%), Positives = 175/323 (54%), Gaps = 10/323 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVI 62
            + +A       HVPV+L++++ LL P    PG V++D T G GG+S +  +      ++
Sbjct: 33  RLDAARSGADPLHVPVMLDRIVELLAPALERPGAVLVDGTLGLGGHSEALLRACPGMRLV 92

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQID 119
            +DRD  A+      +  Y ++     A +S +            D V+ DLGVSS Q+D
Sbjct: 93  GVDRDTTALERSAARLAPYADRTHFVHAVYSDIPRALDEAGAAEADAVLLDLGVSSPQLD 152

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             DRGF++    PLDMRM     ++A++VVN   V +LTR+L   GEE+ ASR+A AI +
Sbjct: 153 ETDRGFAYAHDAPLDMRMDRDQSLTAAEVVNTYPVAELTRVLRTYGEERFASRVARAIER 212

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +R  AP ++T+ L+ L+++ +   ++    HPA R+FQ LRI VN E+  L + L +A  
Sbjct: 213 QRAQAPIESTRALAELVREAIPAATRRTGGHPAKRAFQGLRIEVNAELSILERALPAAIA 272

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR+ K+  A+ +         +P        + +T+   +PT 
Sbjct: 273 RLAGGGRVAVLSYHSLEDRMTKRALAALATDTTPADLPVPLPERQPELRLLTRGAELPTD 332

Query: 298 EDVAFNRRSRSAKLRAGMRTVER 320
           E+   N R++SA+LRA  R    
Sbjct: 333 EENERNPRAQSARLRAAERVRPP 355


>gi|318607135|emb|CBY28633.1| rrna small subunit methyltransferase H [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 303

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 169/309 (54%), Gaps = 19/309 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +     
Sbjct: 1   MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGCLIAIDRDPQAIKAAKSI--- 57

Query: 81  YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 58  TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    GISA++ + +A+  D+  +L   GEE+ A R+A AIV+   + P   T++L+ LI
Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVECNLTQPMTRTKELADLI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +    HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 178 ANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           R+VK F    S        +  + A          +S+ K  ++P   +VA N R+RS+ 
Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 295 LRFAERIKE 303


>gi|224419084|ref|ZP_03657090.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
 gi|253828022|ref|ZP_04870907.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313142594|ref|ZP_07804787.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
 gi|253511428|gb|EES90087.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313131625|gb|EFR49242.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
          Length = 311

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 156/308 (50%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
            H+ VL ++V+   N       G +++D T G GG+S +  +    +  I +D+D  A++
Sbjct: 4   PHISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDEAIA 63

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             ++ +  + ++FS+    FS +       +  + G++ D+GVSSMQ D  +RGF F   
Sbjct: 64  LAKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCFDSE 123

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
                       +A D+VN   + +L RI    GE ++  ++A+ IV+ R+     + + 
Sbjct: 124 FLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITSAKM 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG-LLIVVS 249
           LS  I K     K+ +IHPAT +FQALRI VNNE+ EL   L+  +         L ++S
Sbjct: 184 LSQFIAK---HFKHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR++K  F       +     +      +    +S+ KK ++P +E++  N R+R
Sbjct: 241 FHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKGRSLYKKPIIPKEEEIKDNPRAR 300

Query: 308 SAKLRAGM 315
           S+K+R   
Sbjct: 301 SSKMRVFE 308


>gi|297199072|ref|ZP_06916469.1| MraW methylase [Streptomyces sviceus ATCC 29083]
 gi|197715975|gb|EDY60009.1| MraW methylase [Streptomyces sviceus ATCC 29083]
          Length = 318

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL P    PG V++D T G GG+S +  +      +IALDRD  A
Sbjct: 2   SQSRHVPVMLQRCLDLLAPALERPGSVVVDCTLGLGGHSEALLQRFPEARLIALDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+ +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSGERLAPFGERATLVHAVYDELPDVLDRLGIARVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R   PF 
Sbjct: 122 AQDAPLDMRMDQTTGMSAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+ ++  + K    +PA R+FQALRI VN E+  L + + +A KAL  GG +
Sbjct: 182 NSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+ R   R  E
Sbjct: 302 AAPARCRGAERIRE 315


>gi|118602334|ref|YP_903549.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|262826332|sp|A1AVX1|RSMH_RUTMC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118567273|gb|ABL02078.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 307

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 166/307 (54%), Gaps = 12/307 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCG 74
             H  V+L + I  LN     + +DATFG GG+++           +IA D+D  A+   
Sbjct: 4   NHHQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKLGEQGKLIAFDQDINAIEYA 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG----VVFDLGVSSMQIDCGDRGFSFQKS 130
            +   D +   +L  + FS + + +  +G+      ++ DLGVSS Q+D   RGFSF+  
Sbjct: 64  HKNFTDSR--LTLIYSAFSNMLNIITQQGLMSKIDGILMDLGVSSPQLDNAQRGFSFKAD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+ + G+SA+  +N AN +++  ++   G+EK++  IA  I K +Q    +TT 
Sbjct: 122 GPLDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKRSRHIATRIKKYQQKHTLETTL 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ K V   KN   HPATR+FQA+RIF+N E+++L   L  ++  L+  G L ++S
Sbjct: 182 ALAGIVSKVVKRQKN--KHPATRTFQAIRIFINQELKQLEDVLEQSKDILRKDGRLSIIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHS+EDR+VK F    S +    + +   +                ++ +++ N+R+RSA
Sbjct: 240 FHSIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTCLKNLGKYFASKAEISRNKRARSA 299

Query: 310 KLRAGMR 316
            LR   +
Sbjct: 300 ILRVASK 306


>gi|167626453|ref|YP_001676953.1| S-adenosyl-methyltransferase MraW [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254813209|sp|B0TZ13|RSMH_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167596454|gb|ABZ86452.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 308

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ IA LN  P  + +DATFG GG+S++         +IA D+D  A+     
Sbjct: 4   MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +   + F +  A+F+ + DY         VDG++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 64  NFQ--NDNFEMVHASFTYIYDYCLQHNLLGRVDGIIMDLGVSSPQLDNANRGFSFTHDGP 121

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++AS  + + +V +LT I  + GEE+ A +IA  I          TT   
Sbjct: 122 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKGYIAENGSITTTHQ 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + + +     K  + +PATR FQALRI+VN+E+++L   L S    +K GG +  +SFH
Sbjct: 182 LAELIRAT-IGKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F S             M+P +      + ITKK     Q++++ N RSRS
Sbjct: 241 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSRS 299

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 300 AILRVVEK 307


>gi|258542962|ref|YP_003188395.1| S-adenosyl-methyltransferase MraW [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634040|dbj|BAI00016.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01]
 gi|256637100|dbj|BAI03069.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-03]
 gi|256640152|dbj|BAI06114.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-07]
 gi|256643209|dbj|BAI09164.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-22]
 gi|256646264|dbj|BAI12212.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-26]
 gi|256649317|dbj|BAI15258.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-32]
 gi|256652303|dbj|BAI18237.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655361|dbj|BAI21288.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-12]
          Length = 335

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 133/325 (40%), Positives = 185/325 (56%), Gaps = 18/325 (5%)

Query: 9   MSSAIHHTIGD----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIA 63
           M++    +  +    H+PV+L +V+  L+PA G+ ILD TFG GGYS +  K    NV  
Sbjct: 1   MNALSSFSHPETAQGHIPVMLAEVLEYLHPADGERILDCTFGGGGYSSAILKSADCNVWG 60

Query: 64  LDRDPFAVSCGQETM-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115
           +DRDP A++ GQ         D   +  L Q +F  +            DG+V DLGVSS
Sbjct: 61  IDRDPDAIARGQVLSRTFPTADGGSRLHLLQGSFGNMLALASAAGISTFDGIVLDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
            Q+D  DRGFSF+  GPLDMRM  SG SA+D+VN+A   +L  I    GEE+ A R+A A
Sbjct: 121 FQLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARA 180

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +V  R  APFQTT  L+ L++  +   + + I  ATR+FQ LRI VN+E+ E+ +GL  A
Sbjct: 181 VVNARSEAPFQTTTQLADLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQA 239

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKK 291
              L  GG L+VVSFHSLEDR+ K+     +GK  +     P    + A    F ++T K
Sbjct: 240 LDMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPETDFVALTHK 299

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
              P+  + + N R+RSA+LRA M+
Sbjct: 300 ARRPSDTECSHNPRARSARLRAVMK 324


>gi|134294639|ref|YP_001118374.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4]
 gi|263446940|sp|A4JB86|RSMH_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134137796|gb|ABO53539.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4]
          Length = 313

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVDSLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|319957176|ref|YP_004168439.1| s-adenosyl-methyltransferase mraw [Nitratifractor salsuginis DSM
           16511]
 gi|319419580|gb|ADV46690.1| S-adenosyl-methyltransferase MraW [Nitratifractor salsuginis DSM
           16511]
          Length = 319

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 169/317 (53%), Gaps = 13/317 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           M + S KT           H+PVLL +V+   +     V++D T G  G+S +  +    
Sbjct: 1   MSTHSSKT------SLQTPHIPVLLPEVMESFSSLDEGVLIDCTLGYAGHSSALLEAHPK 54

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQ 117
             +I +DRDP A+    + +  Y+++  L   +FS+ L   +  + V G++ D GVSS+Q
Sbjct: 55  LKLIGIDRDPEALEFSAQRLAPYRDRVRLEHGSFSERLPSLIDQEPVVGILADFGVSSLQ 114

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           +D  +RGFSF            + + A DVVN   ++ L  +    GE + A  +A AIV
Sbjct: 115 LDKKERGFSFASENLDMRMNPEAPLRAYDVVNGYPLERLEYLFREYGEIRPAGALAAAIV 174

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           K R +AP  + Q+L+ L +  +      + HPAT+ FQA+RI VN+E+ E+ + L + E 
Sbjct: 175 KARANAPISSAQELAELAKTVLRG--KGKTHPATQMFQAIRIEVNDELGEIERLLDTLEA 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295
              AG ++ +++FHSLEDRLVK  F + S K +     I      + A+ + +++K    
Sbjct: 233 KRPAGAIVSLITFHSLEDRLVKNRFRAWSQKCICPPEAIRCTCGGNHALGEMLSRKPRSA 292

Query: 296 TQEDVAFNRRSRSAKLR 312
           ++E++  N RSRSAKLR
Sbjct: 293 SKEELRSNPRSRSAKLR 309


>gi|282897735|ref|ZP_06305734.1| methyltransferase [Raphidiopsis brookii D9]
 gi|281197414|gb|EFA72311.1| methyltransferase [Raphidiopsis brookii D9]
          Length = 305

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 159/311 (51%), Gaps = 24/311 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           + ++     H+PVL E++I  LN   G   LD T G GG+SR   +    + V+A+D+D 
Sbjct: 15  TPLNQVPFSHIPVLGEELIRGLNIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 74

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV   +  + ++ ++       F       P    DG++ DLGVSS  +D  +RGFSF+
Sbjct: 75  DAVIAAKTRLSEFGDRVDFLHTNFVNFP--FPPNTYDGILADLGVSSYHLDNPERGFSFR 132

Query: 129 KSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     I+A+D+VN  + ++LT I    GEE+ + +IA  I++        T
Sbjct: 133 HTANLDMRMNQQQSITAADIVNGWDEQELTHIFFEYGEERLSRKIARRIIE--NRPFSTT 190

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           TQ   S+        +  RIHPATR FQALR+ VN+E++ L   L  A  +L  GG + +
Sbjct: 191 TQLAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIAL 250

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK    +                   +   +TKK +  T  ++  N RSR
Sbjct: 251 ISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATDPEIQHNPRSR 293

Query: 308 SAKLRAGMRTV 318
           SAKLR   +  
Sbjct: 294 SAKLRIAQKVA 304


>gi|225677071|ref|ZP_03788076.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590893|gb|EEH12115.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 314

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 125/324 (38%), Positives = 181/324 (55%), Gaps = 39/324 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        + 
Sbjct: 2   THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61

Query: 78  MRDYKEQFSLFQATFSQLQDY------------------------VPDKGVDGVVFDLGV 113
              Y ++  LF   FS ++                          +   GVDGVVFD+GV
Sbjct: 62  SVRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGV 121

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172
           SSMQ+D GDRGFSF   GPLDM M  S   +AS  VN    +++   +   G E+ + +I
Sbjct: 122 SSMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKI 181

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           A AI+  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+
Sbjct: 182 ARAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGI 240

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
           ++A + L   G LIVV+FHSLEDR+VK FF                      F  + KKV
Sbjct: 241 KAASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKV 288

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           +  + E+V+ N RSRSAKLRA  R
Sbjct: 289 IEASIEEVSANPRSRSAKLRAIQR 312


>gi|254525262|ref|ZP_05137317.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14]
 gi|219722853|gb|EED41378.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14]
          Length = 322

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 178/314 (56%), Gaps = 8/314 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  +   H+PVL  +V+  L        LD TFG GG++R           ++ +D+DP 
Sbjct: 12  VSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPE 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           A++  +        + S+F+ +F+QL  +     G+DGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 72  AIAVAERDFAP-DPRVSIFRGSFAQLLQWDATADGLDGVLFDLGVSSPQLDVAERGFSFG 130

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM    G SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF  
Sbjct: 131 KDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFTR 190

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ L+  +V     ++IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L +
Sbjct: 191 TAELAELV-ASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAI 249

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK++    +    A R +  +         I    +  T E++A N R+R
Sbjct: 250 ISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRAR 308

Query: 308 SAKLRAGMRTVERS 321
           SA LR   +    +
Sbjct: 309 SAVLRVAQKREADA 322


>gi|263506507|sp|Q2NZB1|RSMH_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263506516|sp|B2SNY6|RSMH_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 337

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDTELNVNPRARS 297

Query: 309 AKLRAGMRTV 318
           A LR   +  
Sbjct: 298 AVLRVAEKLE 307


>gi|88799431|ref|ZP_01115008.1| S-adenosyl-methyltransferase [Reinekea sp. MED297]
 gi|88777741|gb|EAR08939.1| S-adenosyl-methyltransferase [Reinekea sp. MED297]
          Length = 315

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 169/305 (55%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  ++     V +D TFG GG+SR         + +I  D+DP A++   E
Sbjct: 11  HETVLLHETVEAVDVGS-GVYVDGTFGRGGHSRLLLSRLDADARLIVFDKDPLAIATANE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     + ++ Q  F++L   +        V G++ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 70  -LAAEDSRVTVVQRGFAELSSVLKQAGLMGQVSGILLDLGVSSPQLDDAERGFSFRADGP 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G SA+  + + + K+L  +L   G+E+ + RIA AIV  RQ  P + T  L
Sbjct: 129 LDMRMNPESGESAAQWIARVSEKELADVLFQYGDERFSRRIARAIVTARQKQPIERTLQL 188

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I KT +   +++ HPAT+SFQA+RI VN E++EL   L ++  ALK GG L V+SFH
Sbjct: 189 AEII-KTAHPKWDHKKHPATKSFQAIRIAVNGELDELDAVLSASVGALKPGGRLAVISFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+F   ++        +   +    V      K +  + E+VA N RSRSA L
Sbjct: 248 SLEDRAVKQFIKLQAKGPELPPGLPVRDEDIHVTMKAVGKAIKASAEEVAVNVRSRSAVL 307

Query: 312 RAGMR 316
           R   +
Sbjct: 308 RVAEK 312


>gi|330813725|ref|YP_004357964.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486820|gb|AEA81225.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 333

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 175/330 (53%), Gaps = 9/330 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           +  H PV+L +VI  L P     I+D TFG GGYS+   +      V+ +DRDP      
Sbjct: 1   MNPHYPVMLNEVITSLEPRSKTTIVDCTFGCGGYSQKILETFPDCKVVGIDRDPSVQEFA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + +K +F      FS L++ +      +   VFD G+SS Q+D  DRGFSF  +  
Sbjct: 61  TILEKKFKNRFFFINDKFSNLEEIINKHKDEIGSFVFDFGISSFQLDNHDRGFSFNSNIK 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  + ISA +++N+A+++DL  I+ I GE+K   +IA  IV+ R   P  +TQDL 
Sbjct: 121 LDMRMGKNKISAYELLNEASLEDLNSIIKIFGEDKDHKKIAKEIVRTRDIKPIHSTQDLC 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I K    +K  + +P+T++FQA+R+ VN E+ E+   L    K      ++  V+FHS
Sbjct: 181 NAILKAK-GNKYFKKNPSTKTFQAIRMIVNQELSEIFNSLTRVIKICNPDTIVTAVTFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VKK F             IP+          Q +  + + P+++++  N RSRSA
Sbjct: 240 LEDRIVKKIFNISKDSDQNPSRYIPTTHQEKKETFIQRVNNRALKPSEQEIVSNPRSRSA 299

Query: 310 KLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           KLR+  +  + +I  D   + + RL  L +
Sbjct: 300 KLRSATKIGKGTISMDRKALKMERLFQLEE 329


>gi|296110609|ref|YP_003620990.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154]
 gi|295832140|gb|ADG40021.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154]
          Length = 313

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T  +HV VLL + +ALLN  P  + +DAT G GG++    K      + + D+D  A+  
Sbjct: 2   TEFEHVTVLLHEAVALLNIKPDGLYVDATLGGGGHTGEILKQLTSGTLYSFDQDDLAIRY 61

Query: 74  GQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +E   D     +  L    F  L   + ++    VDG+++DLGVSS+Q D G RGFS+ 
Sbjct: 62  NREQFADDIQAGKLVLIHQNFRTLTSALAERGVTQVDGIIYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM      +A  +VN  +  +L RIL   GE++   +IA  I   R++ P  T
Sbjct: 122 YDADLDMRMDQRQNLTAKIIVNDWSFHELLRILSRYGEDRFPKQIARKIESHREAQPINT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  A   L   G + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIALLAPSGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305
            ++F SLEDRLVK+ F  ++        +        A +  +T+K ++P++ ++  N R
Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPSEHEMTINHR 301

Query: 306 SRSAKLRAGMR 316
           S SAKLR   R
Sbjct: 302 SESAKLRGIER 312


>gi|328675727|gb|AEB28402.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida 3523]
          Length = 305

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 171/309 (55%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S   +
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILDKLTTGRLIAFDKDLDAISYANQ 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF   GP
Sbjct: 61  KFQFSN--FEIVHASFASIYDYCLQHNLLSKIDGIIMDLGVSSPQLDNAARGFSFMHDGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM    GI+AS  +   +V +L+ I  + GEE+ A +IA  I    Q      TT +
Sbjct: 119 LDMRMDVSKGITASQALEVLSVDELSYIFKVYGEERFARKIALRIKDYIQQNGSINTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +KAGG +  +SF
Sbjct: 179 LAELIRMTI--GKREKKNPATRCFQALRIYVNNELKDLEALLENILAVIKAGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK      +++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKA-KANDDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|42520071|ref|NP_965986.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|88912336|sp|P62478|RSMH_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42409808|gb|AAS13920.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 314

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 126/324 (38%), Positives = 182/324 (56%), Gaps = 39/324 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        + 
Sbjct: 2   THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61

Query: 78  MRDYKEQFSLFQATFSQLQDY------------------------VPDKGVDGVVFDLGV 113
              Y ++  LF   FS ++                          +   GVDGVVFD+GV
Sbjct: 62  SVRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGV 121

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172
           SSMQ+D GDRGFSF   GPLDM M  S   +AS  VN    +++   +   G E+ + +I
Sbjct: 122 SSMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKI 181

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           A AI+  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+EEL +G+
Sbjct: 182 ARAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGI 240

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
           ++A + L   G LIVV+FHSLEDR+VK FF                      F  + KKV
Sbjct: 241 KAASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKV 288

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           +  + E+V+ N RSRSAKLRA  R
Sbjct: 289 IEASIEEVSANPRSRSAKLRAIQR 312


>gi|302528477|ref|ZP_07280819.1| MraW methylase [Streptomyces sp. AA4]
 gi|302437372|gb|EFL09188.1| MraW methylase [Streptomyces sp. AA4]
          Length = 318

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 168/315 (53%), Gaps = 10/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
              +HVPVLL++++ L  PA      V++DAT G GG+S +       +  I LDRDP A
Sbjct: 3   DSAEHVPVLLDRIVELFAPALADRDAVLVDATVGLGGHSDALLSAFPRLRLIGLDRDPAA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++  L    +  L + V       VDG++FDLGVSSMQ+D  +RGF++
Sbjct: 63  LERSAERLARHGDRVDLVHTVYDGLPEAVSGLGLSRVDGILFDLGVSSMQLDRAERGFAY 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G +A+DV+N     +L RIL   GEE+ A RI  A+V  R+  PF 
Sbjct: 123 SQDAPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVRAVVAEREKEPFT 182

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  L+   V   S+    HPA R+FQALRI VN E+E L + + +A   L   G +
Sbjct: 183 RSGRLVELLYSAVPAASRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGTLAMNGRI 242

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V S+ SLEDRLVK+  A R+         +    H    + +T+      + ++  N R
Sbjct: 243 VVESYQSLEDRLVKQALAERAKSRTPEGLPVELPGHGPELKLLTRGAEKAGESEIEHNPR 302

Query: 306 SRSAKLRAGMRTVER 320
           + S +LRA  R  E 
Sbjct: 303 AASVRLRAAQRIGEP 317


>gi|158334035|ref|YP_001515207.1| S-adenosyl-methyltransferase MraW [Acaryochloris marina MBIC11017]
 gi|263433314|sp|B0BYK8|RSMH_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158304276|gb|ABW25893.1| S-adenosyl-methyltransferase MraW, putative [Acaryochloris marina
           MBIC11017]
          Length = 298

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 157/309 (50%), Gaps = 23/309 (7%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
                  +H+ VL  +++A L      + LDAT G GG+S           VIALD+D  
Sbjct: 2   TPDPGAFNHISVLSHELMAGLMLQEQGLYLDATVGGGGHSALILSQYPQTQVIALDQDIQ 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+   +  + D  ++   +Q  FS       +   DG++ DLGVSS Q+D  +RGFSF+ 
Sbjct: 62  ALEAARAKLHDACDRIQFWQGNFSTYH--PGELRFDGIIADLGVSSAQLDRPERGFSFRY 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM    G++A+DV+N  + +DL  I    GEE+ + RIA  IV +R        
Sbjct: 120 DADLDMRMDQSQGLTAADVINTYSERDLADIFYHYGEERFSRRIARKIVSKRPLRTTSDL 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             + +         +  RIHPATR FQALRI VN E++ L + +  A   LK GG + ++
Sbjct: 180 ARVVASSLPAAKG-RRRRIHPATRVFQALRIAVNQELQVLEKFIEIAPTWLKPGGRIGII 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK  F   S                 + Q +TKK +V ++++   N RSRS
Sbjct: 239 SFHSLEDRIVKIHFRQNS-----------------LLQVVTKKPIVASEQEKRENSRSRS 281

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 282 AKLRFAERV 290


>gi|99034246|ref|ZP_01314308.1| hypothetical protein Wendoof_01000895 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 314

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 126/324 (38%), Positives = 182/324 (56%), Gaps = 39/324 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        + 
Sbjct: 2   THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61

Query: 78  MRDYKEQFSLFQATFSQLQDY------------------------VPDKGVDGVVFDLGV 113
              Y ++  LF   FS ++                          +   GVDGVVFD+GV
Sbjct: 62  SVRYPDRIKLFIEKFSNIKSILSSVKPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGV 121

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172
           SSMQ+D GDRGFSF   GPLDM M  S   +AS  VN    +++   +   G E+ + +I
Sbjct: 122 SSMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKI 181

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           A AI+  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+EEL +G+
Sbjct: 182 ARAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGI 240

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
           ++A + L   G LIVV+FHSLEDR+VK FF                      F  + KKV
Sbjct: 241 KAASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKV 288

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           +  + E+V+ N RSRSAKLRA  R
Sbjct: 289 IEASIEEVSANPRSRSAKLRAIQR 312


>gi|166710645|ref|ZP_02241852.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 347

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 307

Query: 309 AKLRAGMRTV 318
           A LR   +  
Sbjct: 308 AVLRVAEKLE 317


>gi|58583456|ref|YP_202472.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428050|gb|AAW77087.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 353

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 17  VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q++   RGFSF K
Sbjct: 77  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGK 135

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 136 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 195

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 196 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 254

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 255 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 313

Query: 309 AKLRAGMRTV 318
           A LR   +  
Sbjct: 314 AVLRVAEKLE 323


>gi|262831574|sp|A1TAX6|RSMH_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 324

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 17/316 (5%)

Query: 19  DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            H+PVLL++ + LL PA         G  ++DAT GAGG+S  F        +I LDRDP
Sbjct: 6   PHIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDP 65

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDR 123
            A+    + +  + ++ +L +  +  +   V +        D ++FDLGVSSMQ+D  +R
Sbjct: 66  DALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVER 125

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM      +A+ V+N  + K L R+L + GEEK A RIA  IV+RR +
Sbjct: 126 GFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRAN 185

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L  L+ + +    +    HPA R+FQALRI VN E+E L   + +A + L+ 
Sbjct: 186 TPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRP 245

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G + V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E++ 
Sbjct: 246 HGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIE 305

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS S +LRA  + 
Sbjct: 306 RNPRSASVRLRALEKV 321


>gi|167564207|ref|ZP_02357123.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis EO147]
 gi|167571357|ref|ZP_02364231.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis C6786]
          Length = 313

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 167/309 (54%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLGRLGAAGRLIAFDKDPRAIETAKG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      +      V GV+ DLGVSS Q+D  +RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAALKGALEARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + + +K   P+  +V  N R+RSA
Sbjct: 246 SLEDRIVKRFMQTHASAPAVDRRLPIRAVDLPSPPLKLLGRKF--PSDAEVLANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|88608489|ref|YP_506785.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str.
           Miyayama]
 gi|123491328|sp|Q2GCL1|RSMH_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88600658|gb|ABD46126.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str.
           Miyayama]
          Length = 296

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 170/300 (56%), Gaps = 18/300 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H PVLL + +  L P  G V +DATFGAGGY+R+        V A+DRD       Q   
Sbjct: 13  HKPVLLSEALKFLAPKNGGVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVRRFFQVIE 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ +     F  +   + +  VDG+VFDLGVS+MQ+   DRGFSF   GPLDMRM 
Sbjct: 73  NDFPKRTNFINGNFVDIGSLLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S  ++A  VVN      +  I+   GEE+ + +IAHAIV  R+     TT  L+ ++ +
Sbjct: 133 RSTLLTAETVVNSYTEVKIASIIYQFGEERMSRKIAHAIVNARRKKRITTTSSLAEIV-R 191

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           + +  +  +I PAT++FQALRIF+N+E+  L  GLR+A   LK G   +VVSFHSLEDR+
Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFINDELGALECGLRTALTMLKVGSRAVVVSFHSLEDRI 251

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK  F S  G                 F  +TKK+VVP++++V  N  SRSA++R   + 
Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296


>gi|291450857|ref|ZP_06590247.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           albus J1074]
 gi|291353806|gb|EFE80708.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           albus J1074]
          Length = 341

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 124/323 (38%), Positives = 181/323 (56%), Gaps = 10/323 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALD 65
           +A       HVPV+L + + LL PA   PG V++D T G GG+S +         ++ALD
Sbjct: 19  AAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALD 78

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           RD  A+    E +  + ++ +L  A + +L + +       V GV+FDLGVSSMQ+D   
Sbjct: 79  RDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAG 138

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ +  PLDMRM  + GISA++V+N     DL RIL   GEEKQA RI  A+V  R 
Sbjct: 139 RGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERA 198

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF T+  L  +I+  +  + K    +PA R+FQALRI VN E+  L + + +A  +L 
Sbjct: 199 KEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLA 258

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L V+S+HSLEDRLVK+  A+ +         +    +    + +T+   +PT+E+V
Sbjct: 259 VGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELPTEEEV 318

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A NRR+  A+LR   R  E   E
Sbjct: 319 AENRRAAPARLRGAQRIREEHQE 341


>gi|239978979|ref|ZP_04701503.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces albus J1074]
          Length = 343

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 124/323 (38%), Positives = 181/323 (56%), Gaps = 10/323 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALD 65
           +A       HVPV+L + + LL PA   PG V++D T G GG+S +         ++ALD
Sbjct: 21  AAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALD 80

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           RD  A+    E +  + ++ +L  A + +L + +       V GV+FDLGVSSMQ+D   
Sbjct: 81  RDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAG 140

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ +  PLDMRM  + GISA++V+N     DL RIL   GEEKQA RI  A+V  R 
Sbjct: 141 RGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERA 200

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF T+  L  +I+  +  + K    +PA R+FQALRI VN E+  L + + +A  +L 
Sbjct: 201 KEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLA 260

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L V+S+HSLEDRLVK+  A+ +         +    +    + +T+   +PT+E+V
Sbjct: 261 VGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELPTEEEV 320

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A NRR+  A+LR   R  E   E
Sbjct: 321 AENRRAAPARLRGAQRIREEHQE 343


>gi|119358493|ref|YP_913137.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM
           266]
 gi|263446010|sp|A1BJY6|RSMH_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119355842|gb|ABL66713.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM
           266]
          Length = 329

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 103/317 (32%), Positives = 157/317 (49%), Gaps = 19/317 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDP 68
              H PVL  +V   L   P  + +D T G GG++ +          +  S +I +D+D 
Sbjct: 4   SAYHEPVLAAQVTDFLVLRP-GIYIDGTLGGGGHALAIMRALETAGFEKNSLLIGIDQDD 62

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDC 120
            A+     T+  YKE   L +  FS ++  +              G++ DLGVSS QID 
Sbjct: 63  EALHAASTTLSWYKETTVLVKGNFSDVRSILGKVCKQRGLVSRAAGILLDLGVSSSQIDT 122

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFS+ + GPLDMRM      +A+D+VN  + K+L  +    GEE ++  IA  IV  
Sbjct: 123 AGRGFSYLQKGPLDMRMDRCSSTTAADIVNTLDEKELAGLFFRYGEEPRSRMIARHIVNY 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+     T  ++ + I +      + +I   +R FQALRI VN E+E L Q L      L
Sbjct: 183 REQTGAVTGTEVLAAIIRNAERDPHKQIKTLSRVFQALRIEVNQELEVLKQALSDGVDCL 242

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQE 298
              G + V+S+HSLEDR+VK FF  +S      + + +    H  V   +T+K ++  ++
Sbjct: 243 DYHGRMAVISYHSLEDRIVKSFFVEKSKSDWGPKGVGMREPLHKGVLGLVTRKPLIADEK 302

Query: 299 DVAFNRRSRSAKLRAGM 315
           ++  N R+RSAKLR   
Sbjct: 303 EIQENPRARSAKLRVVE 319


>gi|330718673|ref|ZP_08313273.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc fallax KCTC 3537]
          Length = 317

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 157/312 (50%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
              +H  VLL + IALL+  P  + +DAT G GG++    K      + + D+D  A+  
Sbjct: 1   MNFEHTTVLLHEAIALLDINPEGIYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIHY 60

Query: 74  GQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +    D     +  L    F  L   +       V+G+V+DLGVSS+Q D G RGFS+ 
Sbjct: 61  NKAQYADEITAGKLILVHQNFRNLTHVLHQDGITSVNGIVYDLGVSSVQFDDGQRGFSYN 120

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM      +A  +VN+    DL R+L   GE++ A  IA  I + R+    +T
Sbjct: 121 YDAELDMRMDQRQALTAKIIVNEWPFNDLLRVLSRYGEDRFAKSIARKIEQYREKQLIET 180

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +   ++    HPA R+FQALR+ VN+E+  L   L  A   L   G + 
Sbjct: 181 TFELVDIIKDAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQAIDLLGINGKIS 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRR 305
           V++F SLEDRLVK+ F  +         +        V ++   +K ++P+Q+++A N R
Sbjct: 241 VITFQSLEDRLVKQMFREKVSLPELPAGLPLLPEQIEVDYRLSNRKPILPSQQEIAHNHR 300

Query: 306 SRSAKLRAGMRT 317
           + SAKLR   R 
Sbjct: 301 AESAKLRGIERI 312


>gi|119717295|ref|YP_924260.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614]
 gi|262824666|sp|A1SL88|RSMH_NOCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119537956|gb|ABL82573.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614]
          Length = 319

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 176/309 (56%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLL++V+ALL P     G V++DAT G GG++ +       + V+ +DRDP A++  
Sbjct: 6   HVPVLLDRVVALLAPPLEREGSVLVDATLGLGGHTEAVLTRFDLARVVGIDRDPEALALA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  + ++F+   A + +L D +       VD V+FDLGVSSMQ+D  +RGF++ +  
Sbjct: 66  GRRLAPFGDRFTGVHAVYDELPDVLARLGLDAVDAVLFDLGVSSMQLDVRERGFAYAEDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G +A+DV+N     DL RIL   GEE+ A +IA A+V+ R   PF  +  
Sbjct: 126 PLDMRMDGSTGPTAADVLNTYAAADLARILREYGEERFARKIAAAVVRERAKEPFTRSGR 185

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   +    +    HPA R+FQALR+ VN+E+  L + + +A  A+  GG ++V S
Sbjct: 186 LVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAIPAAIDAIGVGGRVVVES 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ F + S   +          H    + +T+       E++A N R+ S 
Sbjct: 246 YHSLEDRLVKQAFVAASRLDVPEDLPFVPAGHEPALRLVTRGAEKAGPEEIALNPRAASV 305

Query: 310 KLRAGMRTV 318
           +LRA  RT 
Sbjct: 306 RLRAIERTS 314


>gi|254994991|ref|ZP_05277181.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str.
           Mississippi]
          Length = 291

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 173/304 (56%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +     V A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V       VDGVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S    A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S                    F  I KK ++PT E++  N RSRS KLRA 
Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEIKNNPRSRSGKLRAI 287

Query: 315 MRTV 318
            R  
Sbjct: 288 ARVE 291


>gi|56416788|ref|YP_153862.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. St.
           Maries]
 gi|68565444|sp|Q5PAS3|RSMH_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56388020|gb|AAV86607.1| S-adenosyl-methyltransferase [Anaplasma marginale str. St. Maries]
          Length = 291

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 173/304 (56%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +     V A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V       VDGVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S    A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLETAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S                    F  I KK ++PT E+V  N RSRS KLRA 
Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287

Query: 315 MRTV 318
            R  
Sbjct: 288 ARVE 291


>gi|116491168|ref|YP_810712.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Oenococcus oeni PSU-1]
 gi|290890684|ref|ZP_06553754.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429]
 gi|122276650|sp|Q04ES5|RSMH_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116091893|gb|ABJ57047.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Oenococcus oeni PSU-1]
 gi|290479659|gb|EFD88313.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429]
          Length = 314

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV V L + +  L      + +DAT G GG++    K     +V + D+D  A+   ++ 
Sbjct: 7   HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66

Query: 78  --MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 + + SL  + F  L    + +    +DG+VFDLGVSS Q D   RGFS++    
Sbjct: 67  FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + A  +VN    KDL  I+   GEEK AS IA  I+KRR+  P  TT++L
Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I++ +     + + HPA ++FQA+RI VN+E+  L + L+ A + L +GG + V++F
Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNSGGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK FF   + K      +  P       F+ +TK  ++P+ E++  N R+ SA
Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPLIPSVEEIEENHRAHSA 306

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 307 KLRVLEK 313


>gi|156741091|ref|YP_001431220.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM
           13941]
 gi|262826161|sp|A7NIA2|RSMH_ROSCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156232419|gb|ABU57202.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM
           13941]
          Length = 312

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 22/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +A L P PG   +D T G GG++ +  +       ++ +D DP A++    
Sbjct: 23  HTPVLLTETLAGLQPHPGGWYIDGTVGGGGHAAAILEATAPDGRLLGIDCDPAALAAAAA 82

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+ +L + +F ++           V GV+ DLGVSS Q+D  +RGFSFQ S PL
Sbjct: 83  RLAPYGERVTLVRGSFREIGRLAHKAGFVQVQGVLLDLGVSSYQLDTPERGFSFQASAPL 142

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+     ++A+++VN    +DL  ++    EE+ + RIA AIV+ RQ  P  TT +L+
Sbjct: 143 DMRLDPDAPMTAANLVNDLPERDLADLIFRYSEERGSRRIARAIVEARQRRPITTTDELA 202

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + +   +  RIHPATR+FQALRI VN+E+  L   L    + L  GG + +++FHS
Sbjct: 203 EIVSRAL-GGRRGRIHPATRTFQALRIAVNDELTSLDAALPQIVELLVVGGRMAIITFHS 261

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F  +               A     + IT+K V  + E+   N RSRSAKLR
Sbjct: 262 LEDRIVKQFMRA--------------EAQAGHLRLITRKPVEASSEEQRINPRSRSAKLR 307

Query: 313 AGMR 316
              R
Sbjct: 308 VAER 311


>gi|116750882|ref|YP_847569.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans
           MPOB]
 gi|171460803|sp|A0LNY2|RSMH_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116699946|gb|ABK19134.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans
           MPOB]
          Length = 319

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 178/307 (57%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+PV+LE+ + LL    G V +D T G GGYS +  +       ++ +D D  A+    
Sbjct: 8   EHIPVMLEQALELLACRRGGVYVDGTVGGGGYSEAILRASAPDGILLGVDWDAEAIGRAA 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y  +  L +A F++L + +P      VDG+V DLGVS+ QID   RGFSF K GP
Sbjct: 68  GRLSAYGRRAILTKAGFAELPEVLPRHGFAQVDGIVLDLGVSAFQIDDAARGFSFTKDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+D+VN    KDL  ++  LGEE+ + RIA A+V+RR+  PFQ T +L
Sbjct: 128 LDMRMDPGLPQTAADMVNTLPEKDLADLIFRLGEERWSRRIARAVVERRRERPFQRTLEL 187

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +  +  TV  +++  RIHPATR+F ALR+ VN E+E L + L  A   LK GG L VVSF
Sbjct: 188 ADTVAATVPATRDSRRIHPATRTFLALRLAVNQELESLERFLSGALDLLKTGGRLCVVSF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      R  ++       + + +T+K V P + +   N RSRSA
Sbjct: 248 HSLEDRMVKGQFKEWAKSCRCPREAVLCRCEGRPLVRLLTRKAVRPDEREKERNPRSRSA 307

Query: 310 KLRAGMR 316
           +LRA  +
Sbjct: 308 RLRAVEK 314


>gi|254372569|ref|ZP_04988058.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570296|gb|EDN35950.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3549]
          Length = 305

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     +T   
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSISTTLE 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + + +     K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFH
Sbjct: 179 LAELIRAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSRS
Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 297 AILRVVEK 304


>gi|118497204|ref|YP_898254.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           tularensis subsp. novicida U112]
 gi|254374028|ref|ZP_04989510.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548]
 gi|263447525|sp|A0Q5I5|RSMH_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118423110|gb|ABK89500.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           novicida U112]
 gi|151571748|gb|EDN37402.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548]
 gi|328676676|gb|AEB27546.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida Fx1]
          Length = 305

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     +T   
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLE 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + + +     K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFH
Sbjct: 179 LAELIRAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSRS
Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 297 AILRVVEK 304


>gi|328881795|emb|CCA55034.1| rRNA small subunit methyltransferase H [Streptomyces venezuelae
           ATCC 10712]
          Length = 318

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + +L P    PG V++D T G GG+S +  +      ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L + +       VDGV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPYGERATLVHAVYDELPEVLDRLGLATVDGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYAPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++++  + K    +PA R+FQALRI VN E++ + + + +A KA+  GG ++V+S
Sbjct: 186 LVELIRESLPQAAKRTGGNPAKRTFQALRIEVNRELDSVEKAIPAAVKAIGVGGRVVVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK+ FA+ +         +    +    + +T+   +PT+E+VA NRR+  A
Sbjct: 246 YQSLEDRIVKQVFAAGAATTAPPGLPVVPEKYQPRLKLLTRGAELPTEEEVAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAERIRE 315


>gi|305664541|ref|YP_003860828.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170]
 gi|88708558|gb|EAR00794.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170]
          Length = 297

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 15/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC-- 73
            H PVLL++ +  L+     V +D TFG GG+S+   K       ++A D+D  A+    
Sbjct: 2   YHNPVLLKESVEGLDVKKDGVYVDVTFGGGGHSKEILKRLGPKGRLLAFDQDEDALDNKL 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           G E      E F   +    Q   +   + VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 62  GDERFTLINENFRYIR----QFLKFYGIRKVDGILADFGVSSHQFDKAERGFSTRFDADL 117

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + +SA DVVN     DL ++L   G+ + A+ +A+ I+  R+ AP +T+  L 
Sbjct: 118 DMRMSKKNSVSAYDVVNSYEFNDLRKVLFQYGDLRNANAMANKIITSREEAPIKTSAQLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   K ++I    + +QA+RI VN EI+ + + L    + L  GG L V+S+HS
Sbjct: 178 EVLRQFLPKHKEHKI--LAQIYQAIRIEVNQEIQVIKELLEQVPELLNLGGRLSVISYHS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    +    +   P   + +   ++VP++E+ A N R+RSAKLR
Sbjct: 236 LEDRLVKRFIRAGLFEGEPEKDFYGNIDVP--LKKV-GGLIVPSREETALNNRARSAKLR 292

Query: 313 AGMRT 317
              R 
Sbjct: 293 IAERI 297


>gi|302335888|ref|YP_003801095.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084]
 gi|301319728|gb|ADK68215.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084]
          Length = 323

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 170/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV++++VIA L+P PG+ + D T G  G++    +        + +D+D  A+     
Sbjct: 7   HVPVMIDEVIAELDPRPGETVCDCTLGGAGHTLEMARRIQPDGLSLGIDQDDMALDAASA 66

Query: 77  TMRDYKEQFSLF--QATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                         +  F+ L D +      GVD  +FD+GVSS Q+D  +RGFS+ +  
Sbjct: 67  RFERELPTARRRFLKGNFASLDDLLVQAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 126

Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM     +   ++V N  N  DL RIL + G+E+ A+RIA  IV+ R+ AP +TT 
Sbjct: 127 PLDMRMGPGDNTLTAAEVTNSYNEADLARILRVYGDERNATRIARQIVRTREKAPIETTL 186

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +    + +  HPA ++FQALRI VN+E++ L QGLR+A +    GG + V+
Sbjct: 187 QLVEVIKAAIPAAGRRHGGHPARKTFQALRIEVNHELDALDQGLRAAVRWANTGGRICVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK  F   S   +    +   +  H  +    T++ +V +  +VA N R+R
Sbjct: 247 SYHSLEDRIVKHVFTELSQGCVCPPDLPVCACGHVPIVDVRTRRPLVASDAEVARNPRAR 306

Query: 308 SAKLRAGMR 316
           SA +R  ++
Sbjct: 307 SALMRVAVK 315


>gi|325299150|ref|YP_004259067.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           salanitronis DSM 18170]
 gi|324318703|gb|ADY36594.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           salanitronis DSM 18170]
          Length = 305

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 159/311 (51%), Gaps = 17/311 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+PVLL + +  +N     + +D T G GG+SR   +    GS +   D+D  A  
Sbjct: 5   TKTYHIPVLLHESVDGMNLHENGIYVDVTLGGGGHSREILRRMDKGSRLFGFDQDEDA-- 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E       +F+  ++ F  L++++        D ++ DLGVSS  +D   RGFSF+ 
Sbjct: 63  ---ERNAPADTRFTFVRSNFRYLRNFLRYYGVEQADAILADLGVSSHHLDDASRGFSFRF 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+    ++A+DVVN  +   L  I  + GE K + R+A  +VK R   P   T
Sbjct: 120 DAPLDMRMNKRAKLTAADVVNTYDESRLADIFYLYGEMKNSRRLASDLVKARAQKPVALT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL  +++   Y  K        + FQALRI VN+E++ L + L +A   LK GG L V+
Sbjct: 180 GDLIGIVKP--YCPKEREKKELAKIFQALRIEVNHEMDALKEMLEAAVDVLKPGGRLAVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +  A +    +   P        K +VP +E++  N RSRS
Sbjct: 238 TYHSLEDRMVKNMMKAGNVEGKAEQDFYGNFRSP---LRTVGKPIVPGEEEIGRNPRSRS 294

Query: 309 AKLRAGMRTVE 319
           AKLR   +  +
Sbjct: 295 AKLRIAEKVKD 305


>gi|325925694|ref|ZP_08187072.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118]
 gi|325543910|gb|EGD15315.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118]
          Length = 347

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 172/308 (55%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   +G SA+  + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELIVNPRARS 307

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 308 AVLRVAEK 315


>gi|329907257|ref|ZP_08274578.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547063|gb|EGF31946.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 316

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 164/305 (53%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           H  VLLE+ +  L         + LD TFG GG+SR        G  +IA D+DP A++ 
Sbjct: 7   HRTVLLEEAVEALALQGARTDGIYLDGTFGRGGHSRRILSALGAGGRLIAFDKDPQAIAS 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E      +      AT            VDGV+ DLG+SS Q+D   RGFSF+  GPL
Sbjct: 67  AGEIADPRFDIVHDSFATLDLALSARGVGLVDGVLLDLGISSPQVDDAARGFSFRADGPL 126

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G+SA++ +     +++ +++   GEE+ A +IA AI   R   P  +T+ L+
Sbjct: 127 DMRMDTTRGLSAAEWLATETEQNIEKVIRNYGEERFAFQIAKAIAASRTIEPISSTRQLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ +TV  ++     PATR+FQA+RI++N E+EEL  GL+ A   L   G L+V+SFHS
Sbjct: 187 QIVARTV-KTREKGKDPATRTFQAIRIYINQELEELEIGLQQAYARLAPHGRLVVISFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F AS++      R +       P     +  K   P+ E+VA N RSRSA +
Sbjct: 246 LEDRIVKRFMASKAHVEQPDRRLPIRAVDLPQPEMILISKA-KPSTEEVAGNPRSRSAVM 304

Query: 312 RAGMR 316
           R   R
Sbjct: 305 RVAQR 309


>gi|194364373|ref|YP_002026983.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           R551-3]
 gi|262826731|sp|B4SJW8|RSMH_STRM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194347177|gb|ACF50300.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           R551-3]
          Length = 322

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 179/314 (57%), Gaps = 8/314 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  +   H+PVL  +V+  L        LD TFG GG++R           ++ +D+DP 
Sbjct: 12  VSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPE 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           A++  +        + S+F+ +F+QL  +    +G+DGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 72  AIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFG 130

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM    G SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF  
Sbjct: 131 KDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFSR 190

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ LI  +V     ++IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L +
Sbjct: 191 TAELAELI-ASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAI 249

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK++    +    A R +  +         I    +  T E++A N R+R
Sbjct: 250 ISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRAR 308

Query: 308 SAKLRAGMRTVERS 321
           SA LR   +    +
Sbjct: 309 SAVLRVAQKREADA 322


>gi|307731080|ref|YP_003908304.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003]
 gi|307585615|gb|ADN59013.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003]
          Length = 313

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRRVLEKLGEAGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L+  + ++G++ V   + DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  IA---DPRFAIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  +  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--IFASDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|290961148|ref|YP_003492330.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260650674|emb|CBG73790.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 318

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 183/315 (58%), Gaps = 10/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + +L PA   PG V++D T G GG+S +         ++ALDRD  A
Sbjct: 2   SNSRHVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTRFPEARLVALDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+ +L  A + +L + +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSGERLAPFGERATLVHAVYDELPEVLDRLGLPRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + GI A++V+N     +L RIL   GEEKQA RI  AIV+ R   PF 
Sbjct: 122 AQDAPLDMRMDQTTGIGAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+ ++  + K    +PA R+FQALRI VN E+  L + + +A KAL  GG +
Sbjct: 182 NSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVKALAVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E+VA NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAAVTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRR 301

Query: 306 SRSAKLRAGMRTVER 320
           +  A+LR   R  E 
Sbjct: 302 AAPARLRGAERVREH 316


>gi|222475152|ref|YP_002563568.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str.
           Florida]
 gi|255003134|ref|ZP_05278098.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Puerto
           Rico]
 gi|255004260|ref|ZP_05279061.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str.
           Virginia]
 gi|254813206|sp|B9KIK0|RSMH_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222419289|gb|ACM49312.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str.
           Florida]
          Length = 291

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 173/304 (56%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +     V A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V       VDGVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S    A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S                    F  I KK ++PT E+V  N RSRS KLRA 
Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287

Query: 315 MRTV 318
            R  
Sbjct: 288 ARVE 291


>gi|21230192|ref|NP_636109.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188993033|ref|YP_001905043.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24212033|sp|Q8PCK7|RSMH_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504525|sp|B0RVB2|RSMH_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21111730|gb|AAM40033.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|167734793|emb|CAP53003.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv.
           campestris]
          Length = 342

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 172/308 (55%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  + T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVAEHTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++A N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDSELAVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|126665254|ref|ZP_01736237.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17]
 gi|126630624|gb|EBA01239.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17]
          Length = 325

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 178/311 (57%), Gaps = 9/311 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL+  + LL    G   +DATFG GG+SR   +  +    ++ +D+DP A+   + 
Sbjct: 15  HRSVLLDSAVDLLLTDSGGRYVDATFGRGGHSRMILERLAENGALLGIDKDPQAIDEAR- 73

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+     +F+ F  +F+ L    +      V+GV+ DLGVSS Q+D   RGFSF + GPL
Sbjct: 74  TLAAADSRFNAFHGSFADLGQALEQAHWPQVEGVLMDLGVSSPQLDDASRGFSFMRQGPL 133

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA++ +  A+ K +  ++   GEE+ + RIA  IV+RR  AP  TT +L+
Sbjct: 134 DMRMNPQQAPSAAEWLASADEKVIADVIFKYGEERFSRRIARLIVERRAEAPITTTLELA 193

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  K V   + ++ HPATR+FQA+RIF+N E+E+L  GL++A + L  GG L+V+SFHS
Sbjct: 194 ELAAKAVPKKEKHK-HPATRTFQAIRIFINRELEDLELGLKAAAEKLAPGGRLVVISFHS 252

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F    +      + +  + A  +    +  K      ++V+ N R+RSA +R
Sbjct: 253 LEDRLVKRFMRDLARGPQMPKGIPVTAAEESSAYRLIGKPSKAASDEVSDNVRARSAVMR 312

Query: 313 AGMRTVERSIE 323
              R  + + E
Sbjct: 313 VLERRADIAQE 323


>gi|170696713|ref|ZP_02887828.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M]
 gi|170138376|gb|EDT06589.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M]
          Length = 317

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 181/323 (56%), Gaps = 20/323 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+SA+ + +  H  VLLE+ +A L      V +D TFG GG+SR   +       +IA D
Sbjct: 1   MASAMRNELQ-HRTVLLEEAVAALVTRADGVYVDGTFGRGGHSRLVLEKLGQAGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F +   +F+ L+  + ++G++ V   + DLGVSS Q+D  +
Sbjct: 60  KDPLAIATAQQI---GDPRFGIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPE 116

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +    P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           +  +VA N R+RSA +R   R  
Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316


>gi|89256825|ref|YP_514187.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315211|ref|YP_763934.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009864|ref|ZP_02274795.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656696|ref|YP_001429056.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368107|ref|ZP_04984127.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369709|ref|ZP_04985719.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953521|ref|ZP_06558142.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313213|ref|ZP_06803872.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122324792|sp|Q0BKT7|RSMH_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122500397|sp|Q2A265|RSMH_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447878|sp|A7NDP7|RSMH_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89144656|emb|CAJ79980.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130110|gb|ABI83297.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253917|gb|EBA53011.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|157122668|gb|EDO66797.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|164551764|gb|ABU62100.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     +TT +
Sbjct: 119 LDMRMDVSKGITASQALEELSVYDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|226953729|ref|ZP_03824193.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC
           27244]
 gi|294651784|ref|ZP_06729082.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835517|gb|EEH67900.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC
           27244]
 gi|292822341|gb|EFF81246.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 307

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +   L      V +DATFG GG+++         + V A D+DP A+    
Sbjct: 3   HISVLLHETVDGVLAGRDTGVYVDATFGRGGHTKLLLSKLDPNARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ +Q  +       VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  Q-LEQEDSRFKIIHASFADIQAELAKIGIIEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   + L  I+   GEE+ + RIA AI          TT  L
Sbjct: 122 LDMRMDNSQGLTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKLA---GEITTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A + LK  G L V+SFH
Sbjct: 179 AEIVKVAHPKWEKHK-HPATRTFQAIRIAINKELDDIEIFLPQAVELLKPTGQLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         M  +       + +++  +  ++ +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDHGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEKK 305


>gi|78065113|ref|YP_367882.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. 383]
 gi|88909190|sp|Q39JX8|RSMH_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77965858|gb|ABB07238.1| methyltransferase [Burkholderia sp. 383]
          Length = 313

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|289663644|ref|ZP_06485225.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 352

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 176/308 (57%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 307

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 308 AVLRVAEK 315


>gi|254246426|ref|ZP_04939747.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184]
 gi|124871202|gb|EAY62918.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184]
          Length = 319

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 171/322 (53%), Gaps = 18/322 (5%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
           M+      +G+   H  VLL++ +  L   P  V +D TFG GG+SR+          +I
Sbjct: 1   MTET--PAMGNELRHRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLI 58

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           A D+DP A+   Q              A+          + V GV+ DLGVSS Q+D   
Sbjct: 59  AFDKDPRAIETAQGIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPA 118

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 119 RGFSFRADGPLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRA 178

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +    P  TT +L+ ++   V  ++     PATR+FQA+RI VN E+ +L   L +A  
Sbjct: 179 ESDRLGPLDTTGELAQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALS 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I++    P
Sbjct: 238 LLEQGGRLVVISFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFP 295

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           ++ +VA N R+RSA +R   R 
Sbjct: 296 SEAEVAANPRARSAVMRIAERV 317


>gi|83720235|ref|YP_441658.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
 gi|167580465|ref|ZP_02373339.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis
           TXDOH]
 gi|167618573|ref|ZP_02387204.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis Bt4]
 gi|257137827|ref|ZP_05586089.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
 gi|123537607|sp|Q2SZJ1|RSMH_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83654060|gb|ABC38123.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
          Length = 313

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+     
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSDAGRLIAFDKDPRAIETASG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D  +RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + + +  + P+  +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|297161278|gb|ADI10990.1| S-adenosyl-methyltransferase MraW [Streptomyces bingchenggensis
           BCW-1]
          Length = 320

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 115/319 (36%), Positives = 178/319 (55%), Gaps = 10/319 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
            +   HVPV+L++ + +L P    PG V++D T G GG+S +  +      ++ALDRDP 
Sbjct: 2   SSNALHVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRTFPEARLVALDRDPA 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  Y ++ +L  A + +L + +       V G++FDLGVSSMQ+D  +RGF+
Sbjct: 62  ALELSGARLAPYGDRATLVHAVYDELPEVLARLGIPRVQGILFDLGVSSMQLDEAERGFA 121

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + +  PLDMRM  + GISA++V+N     +L RIL   GEEK A +I  A+V+ R   PF
Sbjct: 122 YAQDAPLDMRMDQTTGISAAEVLNTYPPGELVRILRTYGEEKFARKIVDAVVRERAKEPF 181

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A  AL  GG 
Sbjct: 182 HNSARLVELIRAALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVAALAVGGR 241

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + V+S+HSLEDRLVK    + +         +    +    + +T+   +PT+E++A NR
Sbjct: 242 IAVLSYHSLEDRLVKHVLGAGAETTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENR 301

Query: 305 RSRSAKLRAGMRTVERSIE 323
           R+  A+LR   R  E    
Sbjct: 302 RAAPARLRGAERIREEVAP 320


>gi|58584368|ref|YP_197941.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|68565413|sp|Q5GTH5|RSMH_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58418684|gb|AAW70699.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 333

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 125/339 (36%), Positives = 184/339 (54%), Gaps = 52/339 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++++  L+P  G + +DATFGAGGYS++  +     V A+DRD   +   ++  
Sbjct: 3   HIPVLLKEMLLQLSPQNGGIYVDATFGAGGYSKAILESADCKVYAIDRDKTVIKFYEDLN 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDG-------------------------------- 106
             Y  +  LF   FS ++  +    ++                                 
Sbjct: 63  IKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQKKNIWISASSTGV 122

Query: 107 --------VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLT 157
                   VVFD+GVSSMQ+D GDRGFSF   GPLDMRM  S  + AS  VN    +++ 
Sbjct: 123 TPSNTVDGVVFDIGVSSMQLDDGDRGFSFLHDGPLDMRMDNSSHTNASTFVNALREEEIA 182

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
             +   G E+ + RIA AIV  R+    +TT +L+++++  V+  K ++I PATR+FQA+
Sbjct: 183 NTIYNYGGERHSRRIARAIVNARKKKTIKTTFELANIVRSVVFRGK-SKIDPATRTFQAI 241

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277
           RI+VN+E+ EL +G+++A + L   G LIVV+FHSLEDR+VK FF S        R +  
Sbjct: 242 RIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFFKSL----CEPRSIDC 297

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 VF  + KK++  + E+V  N RSRSAKLRA  R
Sbjct: 298 -----KVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQR 331


>gi|110598571|ref|ZP_01386839.1| methyltransferase [Chlorobium ferrooxidans DSM 13031]
 gi|110339805|gb|EAT58312.1| methyltransferase [Chlorobium ferrooxidans DSM 13031]
          Length = 329

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 104/318 (32%), Positives = 173/318 (54%), Gaps = 19/318 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71
           HVPVL ++++A L   P  V +D T G GG+S +  +            +I +D+D  A+
Sbjct: 7   HVPVLADEIVAFLVQKP-GVYVDGTLGGGGHSLAILRALEKAGYLESSLLIGIDQDDAAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG--------VVFDLGVSSMQIDCGDR 123
              +ET+R+++    L +  F ++   +     +         ++ DLGVSS QID  +R
Sbjct: 66  RKAEETLREFRTNSVLVKGNFEEISGVIQRVCSERERPRKVSGILLDLGVSSFQIDSAER 125

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ ++GPLDMRM  SG  SA+D+VN  + ++L +I    GEE ++  I+ AIV  RQ 
Sbjct: 126 GFSYLRNGPLDMRMDSSGQRSAADIVNTCDERELAQIFYRYGEEPRSRAISRAIVGYRQK 185

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               +T +  + I + + +  +N I   +R FQALRI VN E++ L + L    ++L+  
Sbjct: 186 HGPISTTEELAGIIRAIAYGGDNVIKTLSRVFQALRIEVNRELDVLREALCDGIESLEDH 245

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V+S+HSLEDR+VK  FA  + +    + + +         + +T+K ++ +  + A
Sbjct: 246 GRMAVISYHSLEDRIVKTVFADSAREDWGPKGVGLREPLKRGAIRLVTRKPLIASSGETA 305

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RSAKLR   +  E
Sbjct: 306 SNSRARSAKLRVIEKNPE 323


>gi|303258244|ref|ZP_07344251.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium
           1_1_47]
 gi|331001080|ref|ZP_08324711.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis
           YIT 11859]
 gi|302858997|gb|EFL82081.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium
           1_1_47]
 gi|329569385|gb|EGG51163.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis
           YIT 11859]
          Length = 322

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 116/322 (36%), Positives = 174/322 (54%), Gaps = 16/322 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +   +  H PVL E+   LL   P  V +D TFG GG+SR   +       +IA DRD  
Sbjct: 1   MQAEVLVHRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           AV    +       +F +  A F+ +++ +       V G+  D+GVSS QID  +RGFS
Sbjct: 61  AVKAAAQI---QDPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFS 117

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184
           F+  GPLDMRM  S G +A++ + +A+  ++ ++   LGEE+ A + A AI K R +   
Sbjct: 118 FRFDGPLDMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPI 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +T Q    +        K++  HPATR FQA+RI VN E+E+L + L SA   L  GG+
Sbjct: 178 LRTKQLADLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGV 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGK--VMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           L V+SFHSLEDR+VKKFF + +     +  R  ++PS     +F    +  ++P++++  
Sbjct: 238 LAVISFHSLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVR--ILPSEKECE 295

Query: 302 FNRRSRSAKLRAGMRTVERSIE 323
            N R+RS+ LR   RT     E
Sbjct: 296 ENPRARSSVLRGASRTDAPWPE 317


>gi|255994327|ref|ZP_05427462.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989]
 gi|255993040|gb|EEU03129.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989]
          Length = 311

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 165/311 (53%), Gaps = 8/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PV+L + I  LN       +D T G GG+     K       +I +D+D  A+ 
Sbjct: 1   MEFKHSPVMLHECIEALNIKEDGTYIDCTLGGGGHFTEIAKRLSEDGRLIGIDKDADAID 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK 129
             +    + + +  + ++ F  +++     G+DG   ++ DLGVSS Q+D   RGFS++ 
Sbjct: 61  AYRRRNVNTRCKVDIVKSDFKDIREVAAKTGIDGADGILMDLGVSSYQLDKASRGFSYKN 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM      +A  VVN+ + ++LTR++    +EK A+RIA AIV+ R+ A  ++T
Sbjct: 121 DAPLDMRMDREQKFTAKTVVNEYSKEELTRVIREYSDEKWAARIAAAIVREREEAEIEST 180

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             LS +I++ +   ++    HPA R+FQA+RI VN E+  L + L+ A+  L   G L V
Sbjct: 181 ARLSEIIKEAIPAATRRTGPHPAKRTFQAIRIEVNGELGMLEKTLKDAKAILNKNGRLAV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VKK+        +  + +     +         K++ P+ +++  N R+R
Sbjct: 241 ISFHSLEDRIVKKWIQDELHPCICPKDIPVCACNRRSDIITVGKIICPSVDELDRNPRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   R  
Sbjct: 301 SAKLRVIERVA 311


>gi|239618274|ref|YP_002941596.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1]
 gi|263456220|sp|C5CGS3|RSMH_KOSOT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239507105|gb|ACR80592.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1]
          Length = 298

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 166/307 (54%), Gaps = 26/307 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  V++++ +  L P    V +D T G GG++++  +       VI LD D   ++  ++
Sbjct: 9   HRSVMVQETLHYLRPTYNGVYVDGTLGEGGHTKAIIEATSGKCKVIGLDIDEEVLAIAEQ 68

Query: 77  TMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++KE    F++    F  + + +    VDG + D+GVS+ Q+    RGFS++   PL
Sbjct: 69  NLKEFKENVELFNVSYVDFDLVLESLAVDKVDGFLLDIGVSTYQLKAKGRGFSYEIDEPL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS SG ++A+DVVN    K+L RI+   GEEK+ +R      K  +  P QTT  L 
Sbjct: 129 DMRMSLSGSVTAADVVNSYPEKELARIIFEYGEEKRYAR--RIARKIVERRPIQTTIQLV 186

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             I+  +        + H ATR+FQA+RI VN E++ L   L      LK GG ++++SF
Sbjct: 187 EAIKAALPPQERFRRKRHYATRTFQAIRIEVNGELKGLRTALEKFPNYLKPGGRIVIISF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK FF  + G                  + +T+K VVP+ E+V+ N R+RSAK
Sbjct: 247 HSLEDRTVKHFFREQDGV---------------TLKILTRKPVVPSVEEVSENPRARSAK 291

Query: 311 LRAGMRT 317
           LRA  R 
Sbjct: 292 LRAAERI 298


>gi|186477429|ref|YP_001858899.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815]
 gi|263446931|sp|B2JHG8|RSMH_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|184193888|gb|ACC71853.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815]
          Length = 317

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 22/322 (6%)

Query: 13  IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           +   +G+   H  VLLE+ +  L      + +D TFG GG+SR+          +IA D+
Sbjct: 1   MAPAMGNELQHRTVLLEEAVNALVTRVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           DP A++  Q+       +F +   +F+ L+D + ++    V GV+ DLGVSS Q D  +R
Sbjct: 61  DPLAIATAQQ---VADPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPER 117

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    G SA+D + +A V+++T ++   GEE+ A +IA A+V RR  
Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRAE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   
Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSL 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296
           L+ GG L+V+SFHSLEDR+VK+F  + S      R +     +      + + +  V  +
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQTHSSAPAVDRRLPIRAVDLPSPPLKLLGR--VFAS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318
            E+VA N R+RSA +R   R  
Sbjct: 295 DEEVAANPRARSAVMRVAERIA 316


>gi|289671027|ref|ZP_06492102.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 352

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 176/308 (57%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAAAVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 307

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 308 AVLRVAEK 315


>gi|217425690|ref|ZP_03457180.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576]
 gi|217391278|gb|EEC31310.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576]
          Length = 313

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|187932019|ref|YP_001892004.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|263447507|sp|B2SDL2|RSMH_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187712928|gb|ACD31225.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     +TT +
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|53720643|ref|YP_109629.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           K96243]
 gi|167817538|ref|ZP_02449218.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 91]
 gi|115311582|sp|Q63QI9|RSMH_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52211057|emb|CAH37045.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           K96243]
          Length = 313

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|119505128|ref|ZP_01627204.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459110|gb|EAW40209.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 307

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 168/311 (54%), Gaps = 12/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGS---NVIALDRDP 68
             G H  VLLE+ +  L    G     V +D TFG GG+S +  ++ S    ++A D+DP
Sbjct: 1   MSGMHQAVLLEEAVEALMAGAGGTGSEVYVDGTFGRGGHSAAILRVLSDGQRLVAFDKDP 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+   +  +      FS    +F  L+      G+ GV+ DLGVSS Q+D G RGFSFQ
Sbjct: 61  EAMESAR-LLSSENPAFSFLHDSFGNLERAGS--GLAGVLLDLGVSSPQLDDGSRGFSFQ 117

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G +A++ +N A+  DL R+L   GEEK A RI  A+VKRR   PF+ 
Sbjct: 118 QQGPLDMRMDNSKGETAAEFINSASEADLRRVLWDFGEEKFARRIVSALVKRRMVEPFER 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+DL++++       + ++ HPATR+FQALRI VN E+ +L   L      L  GG L+V
Sbjct: 178 TEDLAAVVAAANPAWEKHK-HPATRTFQALRIHVNRELADLDILLGKVIDLLAVGGRLVV 236

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR VK F    +      R +   +        +  K    + +++A N R+R
Sbjct: 237 ISFHSLEDRRVKTFMRREARGRELPRGVPIRDDERGERLRLLGKPRRASDDELAANPRAR 296

Query: 308 SAKLRAGMRTV 318
           SA +R   R  
Sbjct: 297 SAIMRVAERIA 307


>gi|91785301|ref|YP_560507.1| S-adenosyl-methyltransferase MraW [Burkholderia xenovorans LB400]
 gi|122970134|sp|Q13TY4|RSMH_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91689255|gb|ABE32455.1| S-adenosyl-methyltransferase, cell division cytoplasmic protein,
           MraW [Burkholderia xenovorans LB400]
          Length = 317

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 114/322 (35%), Positives = 176/322 (54%), Gaps = 22/322 (6%)

Query: 13  IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           +   +G+   H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+
Sbjct: 1   MAPAMGNELQHRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           DP A++  Q+       +F +   +F+ L+  + ++    V GV+ DLGVSS Q+D  +R
Sbjct: 61  DPLAIATAQQI---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPER 117

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  
Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   
Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSL 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296
           L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  +
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFAS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318
             +VA N R+RSA +R   R  
Sbjct: 295 DAEVAANPRARSAVMRVAERIA 316


>gi|116618594|ref|YP_818965.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|122271206|sp|Q03W30|RSMH_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116097441|gb|ABJ62592.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 312

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + IALL+  P    +DAT G GG++    K      + + D+D  A+    E
Sbjct: 4   EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNAE 63

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  +    F  L   + D     VDG+V+DLGVSS+Q D G RGFS++   
Sbjct: 64  QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVDGIVYDLGVSSVQFDDGQRGFSYKYDA 123

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM      +A  +VN+    +L R+L   GE++   +IA  I + R++AP  TT +
Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA RI VN+E+  L   L  A + L   G + V++
Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  +S        +        A ++ +T+K + P+ E++A N R+ S
Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYELLTRKPISPSTEEMAINHRAES 303

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 304 AKLRGIRR 311


>gi|62260134|gb|AAX77882.1| unknown protein [synthetic construct]
          Length = 340

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 169/313 (53%), Gaps = 14/313 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAV 71
            H +  H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+
Sbjct: 22  KHMLEMHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAI 81

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           S  +E  +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF
Sbjct: 82  SYARENFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSF 139

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             +GPLDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     
Sbjct: 140 THNGPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSI 199

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
                 + +       K  + +PATR FQALRI+VNNE+++L   L +    +K+GG + 
Sbjct: 200 RKTLELAELILAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIA 258

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            +SFHSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N
Sbjct: 259 AISFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQN 317

Query: 304 RRSRSAKLRAGMR 316
            RSRSA LR   +
Sbjct: 318 VRSRSAILRVVEK 330


>gi|149198205|ref|ZP_01875252.1| putative S-adenosylmethionine-dependent methyltransferase
           [Lentisphaera araneosa HTCC2155]
 gi|149138807|gb|EDM27213.1| putative S-adenosylmethionine-dependent methyltransferase
           [Lentisphaera araneosa HTCC2155]
          Length = 311

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 8/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PVL E+VI  L P  G   +D T G GG+S      G    ++ LD D  A+    E 
Sbjct: 6   HIPVLAEQVIDGLRPQNGGKFIDCTLGGGGHSSMILSSGPDVKLLGLDCDDNALRAASER 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++F   +  F  L     D     VDG++ D+GVSS  +D   RGF+++++GPLD
Sbjct: 66  LSSFGDRFKSKRLNFRDLAKLKDDAEWNQVDGILMDIGVSSHHLDEASRGFTYRENGPLD 125

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++AS ++N+ +++ LT+I    GE K+A R+A A+V  R+   F  T+ L+ 
Sbjct: 126 MRMDRRLKVTASMILNKESLEGLTKIFRDYGEMKEAYRLAKAVVADREKELFTHTEQLAG 185

Query: 194 LIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           L  +        + +PA T +FQALRI VN+E+  L  G+++A   LK GG L V+SFHS
Sbjct: 186 LADRVCVNRNRRKRNPAPTLAFQALRIAVNDELGALESGMKAAFDLLKPGGRLAVISFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+FF  ++          I      A  + IT+K +     ++A N R+  AKL
Sbjct: 246 LEDRMVKEFFKDKATSCTCPPDLPICVCGSKAQMKIITRKPLTAESGELAENTRAACAKL 305

Query: 312 RAGMRT 317
           R   + 
Sbjct: 306 RVAEKI 311


>gi|209519087|ref|ZP_03267893.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160]
 gi|209500459|gb|EEA00509.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160]
          Length = 317

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 22/322 (6%)

Query: 13  IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           +   +G+   H  VLL + +  L        +D TFG GG+SR   +       +IA D+
Sbjct: 1   MAPAMGNELQHRTVLLNEAVDALVTRTDGTYVDGTFGRGGHSRLVLERLGEAGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           DP A++  Q+       +F++   +F+ L+  + ++    V GV+ DLGVSS Q+D  +R
Sbjct: 61  DPLAIATAQKIA---DSRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPER 117

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  
Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P  +T +L+ ++   V   +     PATR+FQA+RI VN E+ EL   L +A   
Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALSL 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296
           L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  +
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFAS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318
             +VA N R+RSA +R   R  
Sbjct: 295 DAEVADNPRARSAVMRVAERIA 316


>gi|119961336|ref|YP_947462.1| S-adenosyl-methyltransferase MraW [Arthrobacter aurescens TC1]
 gi|119948195|gb|ABM07106.1| putative S-adenosyl-methyltransferase mraW [Arthrobacter aurescens
           TC1]
          Length = 378

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 15/324 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NV 61
           A   T   HVPVL ++ I LL P            V +DAT G GG+S +  +     ++
Sbjct: 52  AAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHL 111

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           + +DRD  A++     +  + ++  L  A + +++D + D     V G++ DLGVSS+Q+
Sbjct: 112 VGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQL 171

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++    PLDMRM    G +A+DVVN  +  +L RI+   GEEK A RIA+ IV
Sbjct: 172 DERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIV 231

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
             R   PF TT +L   I+  V  +   +  HPA R+FQALRI VN E++ L + + +A 
Sbjct: 232 NARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAV 291

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            A   GG ++V+S+HSLED++VK  F + S     +   +    H    ++ITK   VPT
Sbjct: 292 AATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPT 351

Query: 297 QEDVAFNRRSRSAKLRAGMRTVER 320
             ++A N R+ SA+LRA  R  +R
Sbjct: 352 AAEIAENPRAASARLRAVERIKQR 375


>gi|167740320|ref|ZP_02413094.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 14]
 gi|226199616|ref|ZP_03795172.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928362|gb|EEH24393.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pakistan 9]
          Length = 313

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|51246756|ref|YP_066640.1| hypothetical protein DP2904 [Desulfotalea psychrophila LSv54]
 gi|54036176|sp|Q6AJ47|RSMH_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50877793|emb|CAG37633.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 295

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 25/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L   PG + +D T G GG++ +  +       V+A + D  A+   +E
Sbjct: 7   HISVLLEETMEFLCLQPGGIYVDGTMGLGGHTSAILERTAPDGRVVAFEWDENAIKASRE 66

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+ +L +  F+++           +DG++ D+G+SS+Q+D G RGFSFQ+   L
Sbjct: 67  RLAPYGERLTLVRRNFAEIGVGLTEAGISHIDGLLIDIGLSSLQLDTGTRGFSFQRDDDL 126

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A+ ++     + L  +    GEE+QA  IA AIV  R+  P QTT+ L 
Sbjct: 127 DMRMDERGEMTAATIIATCTEEQLADLFYCYGEERQARPIAAAIVAARKLEPIQTTKQLV 186

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ + +       +IH AT+ FQALRI VN E+E L++ +  A + LK G    ++SFH
Sbjct: 187 RVVARAIPKRFHPKKIHVATKVFQALRIAVNTELENLSKIIDDAGEFLKPGSRFCIISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+ F                      F+ IT K V   +E++  N RSRSA L
Sbjct: 247 SLEDRIVKRKFREN-----------------PNFKVITNKPVKAGEEELDRNYRSRSALL 289

Query: 312 RAGMRT 317
           R   + 
Sbjct: 290 RVAEKV 295


>gi|254191020|ref|ZP_04897526.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938694|gb|EDO94364.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 313

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|254299374|ref|ZP_04966824.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e]
 gi|157808911|gb|EDO86081.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e]
          Length = 319

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 168/318 (52%), Gaps = 16/318 (5%)

Query: 14  HHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
              +G+   H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+D
Sbjct: 4   TPAMGNEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKD 63

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+   +       E      A      D      V GV+ DLGVSS Q+D   RGFSF
Sbjct: 64  PRAIETAESIEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSF 123

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--- 183
           + +GPLDMRM    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +   
Sbjct: 124 RANGPLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRL 183

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P  +T +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ G
Sbjct: 184 GPLDSTGELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDV 300
           G L+V+SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +V
Sbjct: 243 GRLVVISFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEV 300

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA +R   R  
Sbjct: 301 AANPRARSAVMRIAERVA 318


>gi|76579862|gb|ABA49337.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b]
          Length = 413

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 168/318 (52%), Gaps = 16/318 (5%)

Query: 14  HHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
              +G+   H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+D
Sbjct: 98  TPAMGNEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKD 157

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+   +       E      A      D      V GV+ DLGVSS Q+D   RGFSF
Sbjct: 158 PRAIETAESIEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSF 217

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--- 183
           + +GPLDMRM    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +   
Sbjct: 218 RANGPLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRL 277

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P  +T +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ G
Sbjct: 278 GPLDSTGELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQG 336

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDV 300
           G L+V+SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +V
Sbjct: 337 GRLVVISFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEV 394

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA +R   R  
Sbjct: 395 AANPRARSAVMRIAERVA 412


>gi|257458293|ref|ZP_05623442.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580]
 gi|257444320|gb|EEV19414.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580]
          Length = 315

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 158/305 (51%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           H PVLL++ + LL P  P  +++D T G GG+S +F        VI +D DP   +  + 
Sbjct: 5   HTPVLLQECLQLLAPETPDPLLIDGTLGEGGHSEAFLNRFPQLKVIGIDADPAIQAKAKV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +  +   F        D  P  +     ++FDLG+S        RGFSF    PLD
Sbjct: 65  RLAPFGNRVRFFLGWSDDFFDQYPQDNPAPSLILFDLGISLFHYTESKRGFSFGADEPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    ++A+D+VN  + K L  +L +  EE+ +  IA A+V  R+  PF   + LS 
Sbjct: 125 MRINPDESLTAADIVNTYSEKKLADVLYLYAEERFSRPIARAVVAEREKHPFTEARQLSE 184

Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +   V    ++  IHPAT++FQALRI VN+E++ L + L  A   L  GG + V+SFHS
Sbjct: 185 TVFHAVPARFRHGPIHPATKTFQALRIAVNSELDRLPRLLEKAFACLAEGGKMGVISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   +   +    M   +         +TKK V P+ E+ A N  SRSA+L
Sbjct: 245 LEDRIVKLFFRDLAKSCICPPEMPICTCGGMPRAALLTKKPVCPSAEETAANAPSRSARL 304

Query: 312 RAGMR 316
           R   +
Sbjct: 305 RVIKK 309


>gi|329895271|ref|ZP_08270913.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088]
 gi|328922393|gb|EGG29736.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088]
          Length = 305

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 9/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H  VLLE+ +  L        +D TFG GG++R+   + ++   V+ +D+DP A+   Q
Sbjct: 1   MHESVLLEESLQGLVGPLSGRYVDGTFGRGGHTRALLALLNDDAAVLVMDKDPQAIEVAQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     + S++  +F+ L D +      GVDGV+ DLGVSS Q+D  +RGFSFQ+ GP
Sbjct: 61  A-LAAEDGRVSVYHGSFADLPDALRQLGWAGVDGVLLDLGVSSPQLDQDERGFSFQRQGP 119

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G + ++ +   +  DL  +L   GEE+ A RIA AIVK R  +P  TT  L
Sbjct: 120 LDMRMDNSSGQTVAEYLQGVSETDLISVLRDYGEERFARRIAAAIVKARADSPITTTLQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQALRI +N E+E+L   L      L   G L V+SFH
Sbjct: 180 AELVKAAHPRWEKHK-HPATRTFQALRIAINRELEDLDVLLDVVVDCLSPSGRLAVISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+F    S      R +           ++  K + P++ +V  N R+RSA L
Sbjct: 239 SLEDRKVKQFMRKASQGPKVPRGVPVQGDTMRGPLALVGKAIKPSEREVQANVRARSAVL 298

Query: 312 RAGMR 316
           R   R
Sbjct: 299 RIAER 303


>gi|84625268|ref|YP_452640.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188575290|ref|YP_001912219.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84369208|dbj|BAE70366.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519742|gb|ACD57687.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 347

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDTELNVNPRARS 307

Query: 309 AKLRAGMRTV 318
           A LR   +  
Sbjct: 308 AVLRVAEKLE 317


>gi|21241542|ref|NP_641124.1| S-adenosyl-methyltransferase MraW [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|24212036|sp|Q8PPB5|RSMH_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21106893|gb|AAM35660.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 342

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +    A  Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSG-AIKADDAELHVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|53726017|ref|YP_104102.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344]
 gi|67643637|ref|ZP_00442382.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4]
 gi|121598510|ref|YP_991829.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1]
 gi|124386348|ref|YP_001027322.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229]
 gi|126438415|ref|YP_001060543.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668]
 gi|126449153|ref|YP_001082741.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247]
 gi|162210064|ref|YP_334923.2| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b]
 gi|166998645|ref|ZP_02264503.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20]
 gi|167721351|ref|ZP_02404587.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei DM98]
 gi|254179030|ref|ZP_04885684.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399]
 gi|254202823|ref|ZP_04909186.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH]
 gi|254208165|ref|ZP_04914515.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU]
 gi|254259496|ref|ZP_04950550.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a]
 gi|254357631|ref|ZP_04973905.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280]
 gi|88909189|sp|Q3JND0|RSMH_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115311581|sp|Q62GR9|RSMH_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446914|sp|A3MR55|RSMH_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446917|sp|A2S5V3|RSMH_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446920|sp|A1V0S6|RSMH_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446928|sp|A3NDX2|RSMH_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52429440|gb|AAU50033.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344]
 gi|121227320|gb|ABM49838.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1]
 gi|124294368|gb|ABN03637.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229]
 gi|126217908|gb|ABN81414.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668]
 gi|126242023|gb|ABO05116.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247]
 gi|147747070|gb|EDK54147.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH]
 gi|147752059|gb|EDK59126.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU]
 gi|148026695|gb|EDK84780.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280]
 gi|160694944|gb|EDP84952.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399]
 gi|238525016|gb|EEP88446.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4]
 gi|243065324|gb|EES47510.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20]
 gi|254218185|gb|EET07569.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a]
          Length = 313

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|295677772|ref|YP_003606296.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002]
 gi|295437615|gb|ADG16785.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002]
          Length = 313

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 171/312 (54%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L        +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLNEAVDALVTRADGTYVDGTFGRGGHSRLVLERLGEAGRLIAFDKDPLAIATAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L+  + ++    V GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  IA---DPRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  V  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVADNPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|116688575|ref|YP_834198.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424]
 gi|170731875|ref|YP_001763822.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3]
 gi|263446896|sp|B1JUW4|RSMH_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446902|sp|A0K478|RSMH_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116646664|gb|ABK07305.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424]
 gi|169815117|gb|ACA89700.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3]
          Length = 313

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|187925450|ref|YP_001897092.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN]
 gi|263446934|sp|B2SYY3|RSMH_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187716644|gb|ACD17868.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN]
          Length = 317

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 114/322 (35%), Positives = 176/322 (54%), Gaps = 22/322 (6%)

Query: 13  IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           +   +G+   H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+
Sbjct: 1   MAPAMGNELQHRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLAESGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           DP A++  Q+       +F +   +F+ L+  + ++    V GV+ DLG+SS QID  +R
Sbjct: 61  DPLAIATAQQIA---DPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPER 117

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  
Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   
Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSL 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296
           L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  +
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFAS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318
             +VA N R+RSA +R   R  
Sbjct: 295 DAEVAANPRARSAVMRVAERIA 316


>gi|149927124|ref|ZP_01915381.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105]
 gi|149824063|gb|EDM83284.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105]
          Length = 323

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 171/311 (54%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           +  +H+PVLL+  +  L   P  + LD TFG GG+SR+  +       ++ALDRDP AV 
Sbjct: 2   STDEHIPVLLQPTVDALLHTPDGLYLDCTFGRGGHSRALLEKLSAQGQLVALDRDPQAVQ 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E             A      D +    VDGV+ D+GVSS QID  +RGFSF++ GP
Sbjct: 62  AMGEIKDSRFRGVRSAFADLESALDSLGIDQVDGVLMDIGVSSPQIDQAERGFSFRRDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA+D + +A+ +++  ++   GEE+ A +IA AIV RR   P  TT DL
Sbjct: 122 LDMRMDPQTGESAADFLARADAREIKEVIKNYGEERFAVQIATAIVARRTERPITTTLDL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  +  PATR+FQALRI VN E+ +L QGL +A K L+ GG L V+SFH
Sbjct: 182 AQIVAGAVRTREPGQ-DPATRTFQALRIHVNQELAQLEQGLTAAFKRLRVGGRLAVISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+ K+F    +            +P      + + + +  + PT+E+   N RSRS
Sbjct: 241 SLEDRITKQFIEKLANPKSQQDARLRKLPLPEPTPLMKKLDR--IKPTKEECELNPRSRS 298

Query: 309 AKLRAGMRTVE 319
           + LR   +  E
Sbjct: 299 SVLRVAEKLAE 309


>gi|86134334|ref|ZP_01052916.1| MraW methylase family [Polaribacter sp. MED152]
 gi|85821197|gb|EAQ42344.1| MraW methylase family [Polaribacter sp. MED152]
          Length = 298

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 15/304 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN     + +D TFG GG+S+   K       + A D+DP A++ 
Sbjct: 1   MSYHNAVLLQESVDGLNIKEDGIYVDVTFGGGGHSKEILKRLGKNGRLFAFDQDPDAINN 60

Query: 74  G--QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               E      E F       S+   +   K VDG++ DLGVSS Q D  +RGFS +  G
Sbjct: 61  AIDDERFVLIPENFRYI----SRFLRFHRVKKVDGILADLGVSSHQFDEAERGFSIRFDG 116

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    ISA +++N  + + L  IL + GE + + ++A  IV  R+++P +T+  
Sbjct: 117 DLDMRMNQKSKISAKEIINNYSEEKLAEILFLYGELRNSRKLARTIVHERKNSPIETSFQ 176

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +++  +  ++ ++I    + FQA+RI VN E+E L + L+     L   G L V+S+
Sbjct: 177 LKEVLKAFLPNAREHKI--LAQIFQAIRIEVNEELEVLKEFLQQVPNLLNDEGRLSVISY 234

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK+F  +   +    + +  ++  P   + +  K++VP +E++  N R+RSAK
Sbjct: 235 HSLEDRLVKRFIRTGLFEGEPEKDVFGNSNEP--LKKV-GKLIVPPKEEIKINNRARSAK 291

Query: 311 LRAG 314
           LR  
Sbjct: 292 LRLA 295


>gi|312140150|ref|YP_004007486.1| sam dependent methyltransferase mraw [Rhodococcus equi 103S]
 gi|311889489|emb|CBH48806.1| SAM dependent methyltransferase MraW [Rhodococcus equi 103S]
          Length = 390

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 173/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL +   LL PA         G V++DAT G GG+S  F +     ++I LDRDP 
Sbjct: 71  HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 130

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+    + +  Y ++ +     +  + +        P   V  ++FDLGVSSMQ+D  DR
Sbjct: 131 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 190

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+ + GI+A++V+N  +  +L RIL   GEE+ A RIA  IV+RRQ 
Sbjct: 191 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 250

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E++ L   + +   AL  
Sbjct: 251 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 310

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+  A R+         +        F+ +T+     ++ ++ 
Sbjct: 311 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 370

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N R+   +LRA  R   ++
Sbjct: 371 DNPRAAPVRLRAAERIARKA 390


>gi|325676969|ref|ZP_08156641.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Rhodococcus equi ATCC 33707]
 gi|325552269|gb|EGD21959.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Rhodococcus equi ATCC 33707]
          Length = 334

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 173/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL +   LL PA         G V++DAT G GG+S  F +     ++I LDRDP 
Sbjct: 15  HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+    + +  Y ++ +     +  + +        P   V  ++FDLGVSSMQ+D  DR
Sbjct: 75  ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 134

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+ + GI+A++V+N  +  +L RIL   GEE+ A RIA  IV+RRQ 
Sbjct: 135 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 194

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E++ L   + +   AL  
Sbjct: 195 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+  A R+         +        F+ +T+     ++ ++ 
Sbjct: 255 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 314

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N R+   +LRA  R   ++
Sbjct: 315 DNPRAAPVRLRAAERIARKA 334


>gi|221213285|ref|ZP_03586260.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1]
 gi|221166737|gb|EED99208.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1]
          Length = 313

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQS 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  MADARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I +    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|254797245|ref|YP_003082087.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str.
           Illinois]
 gi|254590494|gb|ACT69856.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str.
           Illinois]
          Length = 296

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 123/300 (41%), Positives = 173/300 (57%), Gaps = 18/300 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H PVLL + +  L P  G V +DATFGAGGY+R+        V A+DRD       Q   
Sbjct: 13  HKPVLLSEALKFLAPKNGAVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVKRFFQLIE 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ +   A F  ++  + +  VDG+VFDLGVS+MQ+   DRGFSF   GPLDMRM 
Sbjct: 73  SDFPKRTTFINANFVDIEALLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132

Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            + I +A  +VN      +  I+   GEE+ + +IAHAIV  R+     TT  L+ ++ +
Sbjct: 133 RNTILTAETIVNSYTEVKIASIIYQFGEERMSRKIAHAIVDARRKKRITTTSSLAEIV-R 191

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           + +  +  +I PAT++FQALRIFVN+E+  L  GLR+A   LK GG  +VVSFHSLEDR+
Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFVNDELGALECGLRTALTMLKVGGRAVVVSFHSLEDRI 251

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK  F S  G                 F  +TKK+VVP++++V  N  SRSA++R   + 
Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296


>gi|206561807|ref|YP_002232572.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315]
 gi|263447024|sp|B4E6K0|RSMH_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|198037849|emb|CAR53793.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+        + +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLAPAARLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IKDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|150026102|ref|YP_001296928.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum
           JIP02/86]
 gi|263447480|sp|A6H1A2|RSMH_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149772643|emb|CAL44126.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum
           JIP02/86]
          Length = 291

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 17/300 (5%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN  P  V +D TFG GG+S+           +   D+D  A          
Sbjct: 1   MLKETVDGLNIKPDGVYVDVTFGGGGHSKEILSRLGPEGKLFGFDQDEDAWENA-----L 55

Query: 81  YKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             E+F+L Q  F  ++    +   K VDG++ DLGVSS Q D  +RGFS +    LDMRM
Sbjct: 56  PDERFTLIQENFRYIKRFLRFNGIKKVDGILADLGVSSHQFDVPERGFSTRFDAELDMRM 115

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           S     +A ++VN+ +  +L RI    GE   A  IA AI++ R+      T+DL  ++ 
Sbjct: 116 SKKNDLTAFNIVNEYDETNLRRIFAEYGELGNALAIARAIIEAREKEKIVNTEDLKQVLA 175

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + +  +K ++I    + +Q++RI VN E++ L + L  + + L  GG L V+S+HSLEDR
Sbjct: 176 RFLPNNKAHKI--LAQIYQSIRIEVNQEMDVLKEFLEQSLEVLDQGGRLSVISYHSLEDR 233

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           LVK+F  +   +    +        P  F+ I  K+++P+ +++  N R+RSAKLR   +
Sbjct: 234 LVKRFMKNGLFEGEPEKDFFGRFEVP--FKLI-GKMIIPSNQEIKINNRARSAKLRIAEK 290


>gi|29832656|ref|NP_827290.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           avermitilis MA-4680]
 gi|42559459|sp|Q82AE4|RSMH_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29609776|dbj|BAC73825.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 318

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 10/316 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + +L PA   PG V++D T G GG+S +         ++ALDRD  A
Sbjct: 2   SQSRHVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTQFPEARLVALDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++ +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSGERLAPFGDRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + GISA++V+N     ++ RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 122 AQDAPLDMRMDQTTGISAAEVLNTYPPGEIVRILRAYGEEKQAKRIVSAIVREREKEPFS 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+ ++  + K    +PA R+FQALRI VN E+  L + + +A KAL  GG +
Sbjct: 182 NSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301

Query: 306 SRSAKLRAGMRTVERS 321
           +  A+LR   R  E +
Sbjct: 302 AAPARLRGAQRIREDA 317


>gi|254423474|ref|ZP_05037192.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335]
 gi|196190963|gb|EDX85927.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335]
          Length = 293

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 163/311 (52%), Gaps = 24/311 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDR 66
           M   +      HVPVL E+V+A L    G   LDAT G GG+S    K      ++ALD+
Sbjct: 1   MPEDVTAQPFFHVPVLSEQVLAGLQIEDGGRYLDATVGGGGHSELILKAARNVELVALDQ 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A+S  ++ +  ++++ +     FS+ +     +  DG++ D+GVSS Q+D   RGFS
Sbjct: 61  DLQALSAAKKRLEVWRDRTTFIHTNFSRYE--PGGRKFDGILADIGVSSTQLDQAQRGFS 118

Query: 127 FQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F++  PLDMRM  +    + ++VN  + K +   +   GEE+ + RIA  IV+  +    
Sbjct: 119 FRQEAPLDMRMDSTQELMAKEIVNHWDEKAIADTIYEYGEERLSRRIARRIVE--KRPFS 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+    +       +++ RIHPATR+FQALRI VN E++ L   L  A   L  GG L
Sbjct: 177 TTTELAWEVAGAYPAKARHGRIHPATRTFQALRIAVNGELDVLKTLLAKAPDWLNPGGRL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++SFHSLEDR+VK  +                       + ITKK +V T ++V  N R
Sbjct: 237 AIISFHSLEDRIVKYAYRGDE-----------------RLEIITKKPLVATDQEVKENAR 279

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   R
Sbjct: 280 SRSAKLRIAER 290


>gi|126454576|ref|YP_001067794.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a]
 gi|134280340|ref|ZP_01767051.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305]
 gi|167847424|ref|ZP_02472932.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei B7210]
 gi|167896013|ref|ZP_02483415.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 7894]
 gi|167904399|ref|ZP_02491604.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei NCTC
           13177]
 gi|167920627|ref|ZP_02507718.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           BCC215]
 gi|242314397|ref|ZP_04813413.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b]
 gi|254180538|ref|ZP_04887136.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655]
 gi|254199129|ref|ZP_04905544.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13]
 gi|263446924|sp|A3NZM3|RSMH_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126228218|gb|ABN91758.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a]
 gi|134248347|gb|EBA48430.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305]
 gi|169656959|gb|EDS88356.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13]
 gi|184211077|gb|EDU08120.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655]
 gi|242137636|gb|EES24038.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b]
          Length = 313

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|237813927|ref|YP_002898378.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           MSHR346]
 gi|237506330|gb|ACQ98648.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           MSHR346]
          Length = 313

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADRPSPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|263447893|sp|A1R5F0|RSMH_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 15/324 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NV 61
           A   T   HVPVL ++ I LL P            V +DAT G GG+S +  +     ++
Sbjct: 6   AAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHL 65

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           + +DRD  A++     +  + ++  L  A + +++D + D     V G++ DLGVSS+Q+
Sbjct: 66  VGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQL 125

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++    PLDMRM    G +A+DVVN  +  +L RI+   GEEK A RIA+ IV
Sbjct: 126 DERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIV 185

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
             R   PF TT +L   I+  V  +   +  HPA R+FQALRI VN E++ L + + +A 
Sbjct: 186 NARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAV 245

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            A   GG ++V+S+HSLED++VK  F + S     +   +    H    ++ITK   VPT
Sbjct: 246 AATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPT 305

Query: 297 QEDVAFNRRSRSAKLRAGMRTVER 320
             ++A N R+ SA+LRA  R  +R
Sbjct: 306 AAEIAENPRAASARLRAVERIKQR 329


>gi|330815435|ref|YP_004359140.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3]
 gi|327367828|gb|AEA59184.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3]
          Length = 313

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 176/312 (56%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR        G  +IA D+DP A+     
Sbjct: 7   HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRLVLDRLAEGGRLIAFDKDPLAIETAS- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ L   + ++    V GV+ DLGVSS QID  +RGFSF+ +GPL
Sbjct: 66  --RVGDTRFSIVHDSFASLGGALAERGVGRVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM    G SA+D + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V  ++     PATR+FQA+RI VN E+ +L   L SA  +L+ GG L+V+
Sbjct: 184 GELAQIVGHAV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLESALSSLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + + +K   P + +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKLLGRKF--PGEAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|289209369|ref|YP_003461435.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix]
 gi|288945000|gb|ADC72699.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix]
          Length = 309

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  T+  H+PVL + V+  L        +D TFG GG+SR+       G +++A+DRDP 
Sbjct: 1   MTETVA-HIPVLRDAVLEGLAVRADGFYVDGTFGRGGHSRAILDRLGAGGSLLAMDRDPE 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
             +    +      +F      FS + D      PD+  DGV  DLGVSS Q+D  +RGF
Sbjct: 60  --AAAAASSFADDPRFVFEPGPFSTMADTLRRRFPDRAPDGVFLDLGVSSPQLDTPERGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SFQ  GPLDMRM    G SA+D + +A   ++  ++   GEE+ + R+A AIV  R  AP
Sbjct: 118 SFQHDGPLDMRMDPTQGESAADWLARAEQDEIADVIYHYGEERHSRRVARAIVAARADAP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ ++++ V   +  + HPATR+FQALRI VN E+EEL Q L +  +AL  G  
Sbjct: 178 ITRTAQLAEIVRRAVPGREPGK-HPATRTFQALRIHVNRELEELEQWLETIPEALHTGAR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+SFHSLEDR+VK+            R +      P        K V    E+   N 
Sbjct: 237 MVVISFHSLEDRMVKQALRGPRPDTRLPRGLPVMPETPERPWRPIGKPVRADAEEQRRNP 296

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR G RT
Sbjct: 297 RARSAVLRVGERT 309


>gi|118587349|ref|ZP_01544775.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163]
 gi|118432173|gb|EAV38913.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163]
          Length = 314

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV V L + +  L      + +DAT G GG++    K     +V + D+D  A+   ++ 
Sbjct: 7   HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66

Query: 78  --MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 + + SL  + F  L    + +    +DG+VFDLGVSS Q D   RGFS++    
Sbjct: 67  FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + A  +VN    KDL  I+   GEEK AS IA  I+KRR+  P  TT++L
Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I++ +     + + HPA ++FQA+RI VN+E+  L + L+ A + L  GG + V++F
Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNRGGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK FF   + K      +  P       F+ +TK  ++P+ E++  N R+ SA
Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPIIPSVEEIEENHRAHSA 306

Query: 310 KLRAGMR 316
           K R   +
Sbjct: 307 KFRVLEK 313


>gi|217979581|ref|YP_002363728.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2]
 gi|263456483|sp|B8ETL4|RSMH_METSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217504957|gb|ACK52366.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2]
          Length = 346

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 148/324 (45%), Positives = 195/324 (60%), Gaps = 8/324 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQE 76
             H+PVL ++++ L  P    + LDATFGAGGYSR      G+ V+A+DRDP A++ G  
Sbjct: 17  ARHIPVLRDEILELAAPQADGLYLDATFGAGGYSRGLLATQGARVLAIDRDPGAIAAGAG 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   + +L +A FS L            D  +FD+GVSSMQ+D   RGFSF+  GPL
Sbjct: 77  LIAESNGRLTLVEARFSDLAAVAERLGLGAFDAALFDIGVSSMQLDEAARGFSFRFDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  SG SA+D+VN A+ + L  IL   GEE+ + RIA AIV  R  APF++T  L++
Sbjct: 137 DMRMQQSGPSAADIVNDADEEALADILYYFGEERASRRIAKAIVMDRAKAPFRSTAALAA 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I + V   K   IHPATRSFQALRI VN+E+ EL  GL  AE  LK GG L VV+FHSL
Sbjct: 197 MIAR-VCPGKPGDIHPATRSFQALRIAVNDELGELVAGLAGAEARLKPGGRLAVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPA--VFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK FFA RSG+  A    +P    P    F    ++ V P+  ++A N R+RSAKL
Sbjct: 256 EDRIVKLFFAGRSGRGEAPSRRLPGEPIPPPPTFAVSGRQPVTPSAAEIAANPRARSAKL 315

Query: 312 RAGMRTVERSIED-DSFVHLPRLP 334
           R G+RT   +       + L  LP
Sbjct: 316 RHGVRTSAPARAPGRDLMALAALP 339


>gi|262370681|ref|ZP_06064006.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
 gi|262314481|gb|EEY95523.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
          Length = 307

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 156/308 (50%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  L       + +D TFG GG++R         + V   D+DP A+    
Sbjct: 3   HISVLLHETVDALVADRNTGIFIDGTFGRGGHTRLLLSKLDENARVYGFDKDPQALETA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F +  A+F+ L+   +      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 62  AILEQEDPRFKIIHASFADLKHELEVRGIGLVDGVMADLGVSSPQLDQAERGFSFMKDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G +A+  +     + L  I+   GEE+ + RIA AI         +TT  L
Sbjct: 122 LDMRMDNSKGPTAAQWLVNIEEEALANIIFQYGEERYSRRIAKAIKAA---GLIETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + N+ H ATR+FQA+RI +N E+E++   L  A + LK  G L V+SFH
Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEVFLPQAVEVLKPNGRLAVISFH 237

Query: 252 SLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S  +      M          + +++  V  +  +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLEEDMGWGMPQQRPDTRRLKKVSR--VKASDAEVKANPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 296 LRVAERLA 303


>gi|84495974|ref|ZP_00994828.1| putative S-adenosylmethionine-dependent methyltransferase
           [Janibacter sp. HTCC2649]
 gi|84382742|gb|EAP98623.1| putative S-adenosylmethionine-dependent methyltransferase
           [Janibacter sp. HTCC2649]
          Length = 350

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVL ++++ LL PA   PG V++D T G GG++ +F +    + VI +DRD  A++  
Sbjct: 35  HVPVLRDRIVELLAPALTEPGSVLVDGTLGMGGHAEAFLEACPEATVIGIDRDEEALALA 94

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F    A + ++ D V D   + V  V+FDLGVSS+Q+D  DRGF++ +  
Sbjct: 95  GERLARFGDRFRGVHAVYDEIGDVVKDLGLRDVQAVLFDLGVSSLQLDEADRGFAYAQDA 154

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SGI+A++V+N     DL RIL   GEE+ A RI  ++V+ R+  PF  +  
Sbjct: 155 PLDMRMDQGSGITAAEVLNTYAPADLLRILRDFGEERFAKRIVSSVVRERELEPFTRSAR 214

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++  V   S+    HPA R+FQALRI VN+E+    + +  +   L  GG + V+S
Sbjct: 215 LVELLRAAVPAASQRTGGHPAKRTFQALRIEVNDELGAWQRAVLGSIDVLAVGGRIAVLS 274

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K+   + +         +    H A  + +T+    P++ + + N RS SA
Sbjct: 275 YHSLEDRITKRALVAGATSSTPPGIPVELPEHAAYLRLLTRGAEEPSESEQSTNPRSASA 334

Query: 310 KLRAGMRT 317
           +LR   RT
Sbjct: 335 RLRVAERT 342


>gi|241664315|ref|YP_002982675.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D]
 gi|262825232|sp|C6BEJ1|RSMH_RALP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240866342|gb|ACS64003.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D]
          Length = 319

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VLL++ +  L      + +D TFG GG+SR   +    G  ++A D+
Sbjct: 1   MTTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A++                 A  +Q  D    + V GV+ DLG+SS QID G+RGFS
Sbjct: 61  DPAAITEAGTVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERGFS 120

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----Q 181
           F+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR     
Sbjct: 121 FRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGD 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL++A   L+ 
Sbjct: 181 RGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFDRLEQ 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVP 295
           GG L+V+SFHSLEDR+VK+F  + +    +    +               + + +  V P
Sbjct: 240 GGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR--VKP 297

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           ++ +V+ N R+RSA +R   R
Sbjct: 298 SEAEVSANPRARSAIMRVAER 318


>gi|50365212|ref|YP_053637.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma
           florum L1]
 gi|54036182|sp|Q6F170|RSMH_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50363768|gb|AAT75753.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma
           florum L1]
          Length = 308

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 155/309 (50%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H+PVLL++ I  LN     + +D T G  G+S    K      + ++D+D  A+  G
Sbjct: 1   MEKHIPVLLKESIEYLNIKENGIYVDCTLGRAGHSSEILKKLKDGKLFSIDQDETAILEG 60

Query: 75  QETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +      F + +  F   S +        VDG+++DLGVSS Q D  +RGFS++  G
Sbjct: 61  TEKLTKISNNFKILEGNFVNISAMLAMQGIFEVDGILYDLGVSSPQFDVAERGFSYRFDG 120

Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM  +  S     +VN+   ++L +IL   G+EK A  IA  I+         T +
Sbjct: 121 PLDMRMDRANNSLTAHKIVNEYTQEELEQILWNYGDEKFARSIAKNII--LSRPINTTFE 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +S + +         + HPA ++FQALRI VNNE+E L   L  +   LK  G ++V++
Sbjct: 179 LVSVIKKSLPAKILKQQKHPAKKTFQALRIRVNNEMETLESSLEQSLNLLKPKGRVVVIT 238

Query: 250 FHSLEDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLE+++VK  F   +       + ++         F+ + KK + PT  +V  N RS 
Sbjct: 239 FHSLEEKVVKNIFKKYTLDEQQFYLSNLPYEIESSKDFKLLFKKPLKPTNTEVENNNRSH 298

Query: 308 SAKLRAGMR 316
           SAKL    +
Sbjct: 299 SAKLWVIEK 307


>gi|115350509|ref|YP_772348.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD]
 gi|123322723|sp|Q0BIK9|RSMH_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115280497|gb|ABI86014.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD]
          Length = 313

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 166/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETAQR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +V  N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|255322622|ref|ZP_05363766.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277]
 gi|255300183|gb|EET79456.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277]
          Length = 310

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 157/303 (51%), Gaps = 6/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               HVPVLL +V+         VI+D T G GG+S +  +     N+IA D+D  A+  
Sbjct: 1   MNSPHVPVLLNEVLQAFEDIKSGVIVDCTLGYGGHSSAILEQNQNVNLIACDQDEEAIKF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E ++ + ++  +F++ FS++   V    + G++ D+GVSS+Q+D  +RGF  +     
Sbjct: 61  SSERLKKFGQRAQIFKSKFSEILGKVEQSQIRGILADIGVSSLQLDKNERGFGLKSENLD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
               + +  SA D+VN  + K+L RI    GE    ++ A  I++ RQS   ++ + L+ 
Sbjct: 121 MRMDAQAKFSAYDIVNFYSAKELERIFADYGELPSPAKFAAKIIEARQSGEIKSAERLAQ 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I   +       +  AT +FQA+RI VNNE+ EL   L+S E +     ++ ++SFHSL
Sbjct: 181 IIG--LKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQSIEDSQIDECIVAIISFHSL 238

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK  F   +   +     +        A+ + ++KK + P+  ++  N RS  AK+
Sbjct: 239 EDRIVKNKFRQWAQSCICPPQALRCTCGGDNALGKIVSKKAITPSAAEIKANPRSSCAKM 298

Query: 312 RAG 314
           R  
Sbjct: 299 RIF 301


>gi|308177867|ref|YP_003917273.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Arthrobacter arilaitensis Re117]
 gi|307745330|emb|CBT76302.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Arthrobacter arilaitensis Re117]
          Length = 330

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/322 (36%), Positives = 182/322 (56%), Gaps = 15/322 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKM--GSNVIAL 64
                HVPVLL++ + LL P            +++D T G GG+S +  +     ++I L
Sbjct: 9   PASERHVPVLLDRCVNLLAPGIERANAEGRRAIVVDCTLGMGGHSEAILQRFENLHLIGL 68

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
           DRD  A       +  ++++  L  A + ++ D V D    G+DGV+FDLGVSS+Q+D  
Sbjct: 69  DRDEQAHELAGARLAPFQDRIDLVHAVYDEIADVVEDLGFPGIDGVLFDLGVSSLQLDER 128

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF++    PLDMRM  S G +A D+VN  +  +L RI+   GEEK A RI+ AIV+ R
Sbjct: 129 ERGFAYSYDAPLDMRMDTSVGPTAEDLVNDLDRDELLRIIRQWGEEKFAGRISTAIVEAR 188

Query: 181 QSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             +   TT +L  +I+  V  +   N  HPA R+FQALRI VN E++ L + + +A  AL
Sbjct: 189 AKSRISTTAELVEVIRSVVPAAAARNHGHPAKRTFQALRIAVNEELDVLERAIPAAMGAL 248

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG ++V+S+HSLED++ K+ F   S         +    H A ++ +TK    P++ +
Sbjct: 249 NIGGRVVVMSYHSLEDKITKRHFVQGSTSSAPPGFPVELEEHKAEYKVLTKGTEKPSEHE 308

Query: 300 VAFNRRSRSAKLRAGMRTVERS 321
           +A N R+ SA+LRA  R ++RS
Sbjct: 309 IAENSRAASARLRAVERVLKRS 330


>gi|302036124|ref|YP_003796446.1| s-adenosyl-L-methionine-dependent methyltransferase mraW
           [Candidatus Nitrospira defluvii]
 gi|300604188|emb|CBK40520.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Candidatus Nitrospira defluvii]
          Length = 309

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 168/314 (53%), Gaps = 20/314 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           I      H PVL+E+++  L   PG V +D T G  G +            ++ +DRD  
Sbjct: 3   IDSARDSHEPVLVEEILFWLQCKPGGVYVDCTLGYAGLAARLLDRTAPDGILVGIDRDAA 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A++  +  +R+   +       F  L+  +       VDGV+FDLGVSS Q+D  +RGFS
Sbjct: 63  ALAESRMRLREVAHRVHFRHGNFCDLKALIIGSGVSRVDGVIFDLGVSSPQLDRAERGFS 122

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F++ GPLDMRM    G +A+D+V      +L  ++  LGEE+ + RIA AIV+ R     
Sbjct: 123 FREDGPLDMRMDQREGRTAADLVRDLPETELADLIYQLGEERYSRRIARAIVQARMQGVI 182

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L++++++ V    ++ RIH ATR+FQALRI VN E++ L   LR A   L  GG 
Sbjct: 183 ATTWQLAAVVERAVPASYRHGRIHCATRTFQALRIAVNRELDVLEPALRDAVDILAPGGR 242

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +  VSFHSLEDR+VK  F + +            N   A  + +TKK V+ ++ +   N 
Sbjct: 243 VCAVSFHSLEDRIVKHTFRALA------------NGPEASVRVLTKKPVIASENERNRNP 290

Query: 305 RSRSAKLRAGMRTV 318
           RSRSAKLR   R  
Sbjct: 291 RSRSAKLRVVERIS 304


>gi|309783013|ref|ZP_07677732.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA]
 gi|308918121|gb|EFP63799.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA]
          Length = 319

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VLLE+ +  L      + +D TFG GG+SR   +    G  ++A D+
Sbjct: 1   MTTQASTALRHQTVLLEEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A++                 A  +Q  D    + V GV+ DLG+SS QID G RGFS
Sbjct: 61  DPAAITEAGTVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGARGFS 120

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----Q 181
           F+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR     
Sbjct: 121 FRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGD 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL++A + L+ 
Sbjct: 181 RGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFERLEQ 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVP 295
           GG L+V+SFHSLEDR+VK+F  + +    +    +               + + +  V P
Sbjct: 240 GGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPTPQLRLLGR--VKP 297

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           ++ +V+ N R+RSA +R   R
Sbjct: 298 SEAEVSANPRARSAIMRVAER 318


>gi|331005086|ref|ZP_08328490.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989]
 gi|330421141|gb|EGG95403.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989]
          Length = 314

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 170/315 (53%), Gaps = 10/315 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68
           +       H  VLL + +  L        +D TFG GG+SR         + ++A+D+D 
Sbjct: 2   SQSLEQLSHQSVLLHESVDALITDVNGFYVDGTFGRGGHSREVLLRLSEDAQLMAVDKDE 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRG 124
            A++   +   D K +FS+   +FSQL  ++ +      V+G++ DLGVSS Q+D   RG
Sbjct: 62  QAIAEADKQFSDEK-RFSIRHGSFSQLNQWLVEIEKLGKVNGILLDLGVSSPQLDEAHRG 120

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF + GPLDMRM+   G +A++ +N A+ +D+ R+L   GEE+ + RIA AIV  RQ  
Sbjct: 121 FSFMQDGPLDMRMNRTKGETAAEWINSASQEDIARVLKEYGEERFSKRIARAIVDHRQEQ 180

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           PF TT +LS ++ +     +  + HPATR+FQA+RI +N+E+ +L   L  A  AL  GG
Sbjct: 181 PFATTHELSKVVTEANPAWEKGK-HPATRAFQAIRIHINDELSDLDVILEQALAALAVGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V+SFHSLEDR VK+F   +         +   +           KV      ++A N
Sbjct: 240 RLVVISFHSLEDRRVKRFIRQQVQGDRLPMGVPVRDEQLNKRLRSLGKVTKAGASELAHN 299

Query: 304 RRSRSAKLRAGMRTV 318
            R+RSA +R   +  
Sbjct: 300 PRARSAVMRVAEKIA 314


>gi|323527438|ref|YP_004229591.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001]
 gi|323384440|gb|ADX56531.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001]
          Length = 313

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 164/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRLVLEKLSEAGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D  +RGFSF+  GPLDMR
Sbjct: 67  IADPRFGIVHESFASLRTAIAARGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +T +L
Sbjct: 127 MDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALALLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I +  V  +  +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRVAERIA 312


>gi|300173578|ref|YP_003772744.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887957|emb|CBL91925.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG
           18811]
          Length = 313

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           T  +HV VLL++ +ALLN  P    +DAT G GG++    K   N  + + D+D  A+  
Sbjct: 2   TEFEHVTVLLKEAVALLNVKPDGNYVDATLGGGGHTGEILKQLDNGILYSFDQDDTAIKY 61

Query: 74  GQE--TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +E         +  L    F  L + + +     VDGV++DLGVSS+Q D G RGFS+ 
Sbjct: 62  NEEQYAAEIASGKLVLIHQNFRTLTEALAELGVTQVDGVLYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM      +A  ++N+ +  D+ RIL   GE++   +IA  I   R++    T
Sbjct: 122 YDADLDMRMDQRQTLTAKTIINEWSFNDILRILSRYGEDRFPKQIARKIEHHRENGVINT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  +   L  GG + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQSLDLLAPGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305
            ++F SLEDRLVK+ F  ++        +        A +  +T+K ++PT ++   N R
Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPTNDETQTNHR 301

Query: 306 SRSAKLRAGMR 316
           S+SAKLR   R
Sbjct: 302 SQSAKLRGIER 312


>gi|163787483|ref|ZP_02181930.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium
           ALC-1]
 gi|159877371|gb|EDP71428.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium
           ALC-1]
          Length = 298

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 17/308 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H  VLL + +  L+  P  V +D TFG GG+SR           + A D+D  A++ 
Sbjct: 1   MDYHNAVLLIETVDGLDIKPNGVYVDVTFGGGGHSREILSRLGPNGKLYAFDQDKDALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      E+F L    F  ++ ++       VDGV+ D GVSS Q D  +RGFS +  
Sbjct: 61  TID-----DERFVLINENFRYIKRFLRFYGVKEVDGVLADFGVSSHQFDVAERGFSTRFE 115

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+    ISA  VVN  + + +  +L   GE +Q+  +A  IV  R     +T++
Sbjct: 116 ADLDMRMNQDSKISAYQVVNNYSEEQIKNVLLQYGELRQSPAMARVIVTERAREEIKTSE 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +++  +   K N+     + +QA+RI VN EIE L + L    + LK GG L  +S
Sbjct: 176 QLKKVLKPFLNHKKENK--VLAQIYQAIRIEVNQEIEVLKELLLQTPEILKEGGRLSFIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+F  +   +    R M  +   P   + +  K+++P++ ++  N R+RSA
Sbjct: 234 YHSLEDRLVKRFIRNGLFEGEPERDMFGNFEVP--LRKV-GKLIIPSRLEIKINNRARSA 290

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 291 KLRIAEKI 298


>gi|77166320|ref|YP_344845.1| methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|254435207|ref|ZP_05048714.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27]
 gi|88909205|sp|Q3J781|RSMH_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76884634|gb|ABA59315.1| methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|207088318|gb|EDZ65590.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27]
          Length = 315

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 176/313 (56%), Gaps = 13/313 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           ++ I  H PVLL + I  L      + +D TFG GG++++          ++ +D+DP  
Sbjct: 3   NNEISSHQPVLLREAIQALAIRRDGLYIDGTFGRGGHAQAILAALSSEGRLLGVDKDPA- 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFS 126
                  +     +F++ QA+   L   V ++     ++GV+FDLGVSS Q++  +RGFS
Sbjct: 62  AIAAGHALAQKDGRFTIVQASIGDLARVVSERGWLKRINGVLFDLGVSSPQLESAERGFS 121

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM+ + G SA++ +  A  K++  +L + GEE+   RIA AI++ R+    
Sbjct: 122 FLRDGPLDMRMNPTVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQARELNSL 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T+ L+ ++ K +   +  R+HPATRSFQA+RIF+N+E+EEL   L  A  AL   G L
Sbjct: 182 TRTKQLAEVVAKAIPRWER-RMHPATRSFQAIRIFINHELEELRAALEQALAALAVKGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFN 303
            V+SFHSLEDR+VK+FF  ++        +         A  + +  K + P  E++A N
Sbjct: 241 AVISFHSLEDRIVKRFFREKARGEELPPDLPVMQKDFQQASLKVL-GKPIWPVPEEIAHN 299

Query: 304 RRSRSAKLRAGMR 316
            R+RSA+LR   +
Sbjct: 300 PRARSARLRVAEK 312


>gi|169632239|ref|YP_001705975.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           SDF]
 gi|263433355|sp|B0VPF9|RSMH_ACIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169151031|emb|CAO99677.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii]
          Length = 307

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++          + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTHLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + +   + VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G++A++ + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERHSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLTEDSGWGMPQQQVDTRRLKKISR--VRVSEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|332881743|ref|ZP_08449391.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680382|gb|EGJ53331.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 302

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               HVPVLL++ +  L   P  +  D TFG GG+SR+         ++   D+D  A +
Sbjct: 3   EAVYHVPVLLKECVDGLVVNPAGIYADVTFGGGGHSRAIVSRLDAAGHLYGFDQDADAEA 62

Query: 73  CGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                + D +  F      +      Y   + +DG++ DLGVSS   D  +RGFSF+  G
Sbjct: 63  N---IVADGRFTFVRSNFRYLKNWMRYYGVEQLDGLLADLGVSSHHFDDAERGFSFRFDG 119

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+     +A+DV+N    + L  I  + GE K A ++A  +VK R     +TT++
Sbjct: 120 KLDMRMNQRARLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETTEE 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +++      +  +     + FQALRI VN E++ L + L +A + L+ GG L+V+++
Sbjct: 180 FMEVVKPLFERDREKK--ELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVLTY 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK      +G V   R            +++  KV+VP +E+   N RSRSAK
Sbjct: 238 HSLEDRMVKNLVK--TGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRSAK 295

Query: 311 LRAGMR 316
           LR   +
Sbjct: 296 LRIAEK 301


>gi|77414796|ref|ZP_00790918.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515]
 gi|77159158|gb|EAO70347.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515]
          Length = 298

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/296 (31%), Positives = 154/296 (52%), Gaps = 10/296 (3%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QFS 86
           L+  P  + +DAT G  G+S           ++ A D+D  A+      ++ Y +  Q +
Sbjct: 2   LDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQVT 61

Query: 87  LFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGI 142
             +  F  L      +    ++G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    +
Sbjct: 62  FIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSL 121

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +L+ +I+ +    
Sbjct: 122 TAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSAK 181

Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+ 
Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQL 241

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           F   S   +        +      + + +K ++P+QE++  N R+ SAKLR   R 
Sbjct: 242 FKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRI 297


>gi|56707815|ref|YP_169711.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670286|ref|YP_666843.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456886|ref|ZP_03665359.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370311|ref|ZP_04986316.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874629|ref|ZP_05247339.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|68565439|sp|Q5NGY1|RSMH_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123169471|sp|Q14ID3|RSMH_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56604307|emb|CAG45328.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320619|emb|CAL08711.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568554|gb|EDN34208.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840628|gb|EET19064.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158991|gb|ADA78382.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 305

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q          
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +       K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFH
Sbjct: 179 LAELILAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSRS
Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 297 AILRVVEK 304


>gi|170700174|ref|ZP_02891192.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10]
 gi|172059541|ref|YP_001807193.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6]
 gi|263446887|sp|B1YSR6|RSMH_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170134906|gb|EDT03216.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10]
 gi|171992058|gb|ACB62977.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6]
          Length = 313

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +V  N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|148657877|ref|YP_001278082.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1]
 gi|262826166|sp|A5UZS9|RSMH_ROSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148569987|gb|ABQ92132.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1]
          Length = 313

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 166/306 (54%), Gaps = 22/306 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL +V+A L P PG   +D T G GG++ +  +       ++ +D DP A++    
Sbjct: 23  HTPVLLAEVVAGLLPRPGGRYIDGTVGGGGHAAAILEASSPDGRLLGIDCDPAALAAAAA 82

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +L + +F ++           V+GVV DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 83  RLAPYGDRVTLVRGSFREIGQLAATSGFVQVEGVVLDLGVSSYQLDTPERGFSFQAHAPL 142

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+     ++A+ +VN    ++L  ++   GEE+ + RIA AIV+ RQ  P  TT +L+
Sbjct: 143 DMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVEARQRKPVTTTDELA 202

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ + +   +  RIHPATR+FQALRI VNNE+  L   L      L  GG + +++FHS
Sbjct: 203 AIVTRALGGQR-GRIHPATRTFQALRIAVNNELASLEAALPQIIDLLAPGGRMAIIAFHS 261

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    +               A       IT+K V  + E+   N RSRSA+LR
Sbjct: 262 LEDRIVKHTLRA--------------EAQAGRLHIITRKPVEASIEEQRANPRSRSARLR 307

Query: 313 AGMRTV 318
              R  
Sbjct: 308 VAERVS 313


>gi|296160551|ref|ZP_06843367.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1]
 gi|295889300|gb|EFG69102.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 172/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ L+  + ++    V GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  I---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM    G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  V  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|76798783|ref|ZP_00780998.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21]
 gi|77405004|ref|ZP_00782105.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B]
 gi|77410569|ref|ZP_00786929.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111]
 gi|22533299|gb|AAM99192.1|AE014204_10 conserved hypothetical protein TIGR00006 [Streptococcus agalactiae
           2603V/R]
 gi|76585867|gb|EAO62410.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21]
 gi|77163284|gb|EAO74235.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111]
 gi|77176443|gb|EAO79211.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B]
          Length = 298

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 10/296 (3%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QFS 86
           L+  P  + +DAT G  G+S           ++ A D+D  A+      ++ Y +  Q +
Sbjct: 2   LDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQVT 61

Query: 87  LFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGI 142
             +  F  L      +    ++G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    +
Sbjct: 62  FIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSL 121

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A DVVN  +  DL RI    GE+K + +IA  I + R      TT +L+ +I+ +    
Sbjct: 122 TAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTELAEIIKSSKSAK 181

Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+ 
Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQL 241

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           F   S   +        +      + + +K ++P+QE++  N R+ SAKLR   R 
Sbjct: 242 FKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRI 297


>gi|194335059|ref|YP_002016919.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM
           271]
 gi|262824884|sp|B4S6R7|RSMH_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194312877|gb|ACF47272.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM
           271]
          Length = 333

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 19/317 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69
           G H+PV++ +V  LL   P  + +D T G GG++ S               +I +D+D F
Sbjct: 5   GYHLPVMVSEVTDLLARRP-GIYIDGTLGGGGHAFSVMSALRRSGFENDSLLIGIDQDSF 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV--------PDKGVDGVVFDLGVSSMQIDCG 121
           A+      +R +  +  L +  FS++   +            V G++ DLGVSS QID  
Sbjct: 64  ALEEAAGRLRPFASRVRLERGNFSEMAAIIERIRLREGCRLPVMGILLDLGVSSFQIDTP 123

Query: 122 DRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGFS+ + GPLDMRM   G  SA+D+VN A   +L  I+   GEEK++  IA AI  R 
Sbjct: 124 DRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEEKKSRAIARAIKARV 183

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +           + + ++V    + +I   +R FQALRI VN+E+  L   L      L 
Sbjct: 184 REKGDFRETAELAAVVRSVVAGHDRQIKSLSRVFQALRIAVNDELGVLESALEDGTACLA 243

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299
             G + V+S+HSLEDR+VK+FF  +S      + + +      A F+ +T+K VV + ++
Sbjct: 244 PSGRMGVMSYHSLEDRMVKRFFRDKSEDDWGPKGVGLREPLRSAGFKLVTRKSVVASDDE 303

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N R+RSA+LR   +
Sbjct: 304 VRINPRARSARLRVIEK 320


>gi|294664073|ref|ZP_06729474.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606158|gb|EFF49408.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 347

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +    A  Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSG-AIKADDAELHVNPRARS 307

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 308 AVLRVAEK 315


>gi|294627718|ref|ZP_06706300.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598070|gb|EFF42225.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 347

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +    A  Q ++   +     ++  N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSG-AIKADDAELHVNPRARS 307

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 308 AVLRVAEK 315


>gi|29840135|ref|NP_829241.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC]
 gi|33301363|sp|Q823N6|RSMH_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29834483|gb|AAP05119.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC]
          Length = 297

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 160/305 (52%), Gaps = 20/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+ + ++  +    +   D T GAGG++ +F     ++I     DRD  A+S  +E
Sbjct: 7   HIPVLVNECLSWFSDRNPRSFCDVTVGAGGHAEAFLSTYPSIISYDGSDRDATALSLARE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  + ++  L  A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 67  RLEKFGDRVHLHHASFEDLAQDPKENVYDGILADLGVSSMQLDTLSRGFSFQGEDHDLDM 126

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    GI+AS+V+N    ++L +I    GEE     +A+AIV  R+     T +DL   
Sbjct: 127 RMDTSQGITASEVLNTLREEELGKIFREYGEEPHWKNVANAIVHFRRRKKIITVKDLKEA 186

Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +     +   +IHP T  FQALR++VN E  +L   L SA + L   G L+++SF S 
Sbjct: 187 TARVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPKGRLVIISFCSS 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK FF                     + + +TKKVV+PT E++  N R RSAKLR 
Sbjct: 247 EDRPVKWFFREAEKSG--------------LGKILTKKVVMPTYEEIRRNPRCRSAKLRC 292

Query: 314 GMRTV 318
             +T 
Sbjct: 293 FEKTS 297


>gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent methyltransferase MraW protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072455|gb|ADJ61854.1| S-adenosyl-methionine-dependent methyltransferase MraW protein
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 170/316 (53%), Gaps = 13/316 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVI 62
           M+      +  H  VLLE+ +  L         V LD TFG GG+SR+          +I
Sbjct: 1   MNLQPVPELQ-HRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLI 59

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           A D+DP A++  Q+      E      AT  Q         VDGV+ DLG+SS Q+D   
Sbjct: 60  AFDKDPLAIATAQKIADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAA 119

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    G+SA++ +  A+ + + +++   GEE+ A +IA  IV  R 
Sbjct: 120 RGFSFRLDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRA 179

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  +T+ L++L+ + V  ++     PATR+FQA+RIFVN E+EEL  GL  A   +  
Sbjct: 180 VEPISSTRQLAALVAQAV-KTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQ 238

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQED 299
            G L+V+SFHSLEDR+VK+F AS++      R +     +   A  + + +  V+P+  +
Sbjct: 239 HGRLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPR--VMPSAGE 296

Query: 300 VAFNRRSRSAKLRAGM 315
           V  N R+RSA +R   
Sbjct: 297 VEANPRARSAVMRGLE 312


>gi|294628857|ref|ZP_06707417.1| methylase MraW [Streptomyces sp. e14]
 gi|292832190|gb|EFF90539.1| methylase MraW [Streptomyces sp. e14]
          Length = 318

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +   HVPV+L++ + LL P    PG V++D T G GG+S +         +I LDRD  A
Sbjct: 2   SDSRHVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++ +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++
Sbjct: 62  LRLSGERLAPFGDRATLVHAVYDELPDVLDRLGIVRVQGVLFDLGVSSMQLDEADRGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + GISA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF 
Sbjct: 122 AQDAPLDMRMDQTTGISAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFA 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A KAL  GG +
Sbjct: 182 HSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVKALDVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+ SLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR
Sbjct: 242 AVLSYQSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R   
Sbjct: 302 AAPARLRGVERVRA 315


>gi|195997843|ref|XP_002108790.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens]
 gi|190589566|gb|EDV29588.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens]
          Length = 378

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 132/344 (38%), Positives = 194/344 (56%), Gaps = 42/344 (12%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           H ++  H PVLL+ V+ LL PA G+  +DATFG GG++ +  K      + A+D DP A+
Sbjct: 25  HCSVLKHQPVLLDTVVKLLAPANGQSYIDATFGGGGHTSAILKAATDCQIYAIDTDPLAI 84

Query: 72  SCGQETM---RDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +  ++      ++ ++  + Q  F Q+      Q+ +P   +DG++FDLG+SSMQID   
Sbjct: 85  ARAKQLASTTSNWIQRLKVVQCRFGQMENKLLAQEKLPPNSMDGIIFDLGMSSMQIDDPL 144

Query: 123 RGFSFQKSGPLDMRM---------SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           RGFSFQ SGPLDMRM             I+A+ V+N  + +DL  +L   GEE++A  IA
Sbjct: 145 RGFSFQSSGPLDMRMDATSDEIGKHQHRITAAHVINNIDKEDLADVLWNYGEERKARAIA 204

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
            AI+K R+  P  TT  L  +I +     + K+ +IHPATR+FQA+RI +N+E+ +L QG
Sbjct: 205 TAIIKARKKQPITTTDHLVDIIDRQFPYKYRKDGQIHPATRTFQAIRILINDELWQLVQG 264

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---------- 281
           L + +  LK GG LIV+SFHSLEDR+VKKFF          R    S+            
Sbjct: 265 LNACKALLKNGGRLIVISFHSLEDRIVKKFFNGEDRPDFTSRSSPTSSKQYARLSEEGKS 324

Query: 282 ----------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
                      + ++ I KK + P+ E++A N R+RSAKLR  +
Sbjct: 325 KIESKSIIKRNSPWKLICKKPIYPSPEEIAHNSRARSAKLRCAI 368


>gi|213961666|ref|ZP_03389932.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno]
 gi|213955455|gb|EEB66771.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno]
          Length = 304

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 17/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++     H+PVLL++ +  L   P    +D TFG GG+SR   K       + A D+   
Sbjct: 1   MNDNSSYHIPVLLQQSVEGLAIKPNGTYVDVTFGGGGHSREILKHLGNEGRLFAFDQ--- 57

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
                        ++F+L Q  F  L+ Y+       VDGV+ D GVSS Q D  +RGFS
Sbjct: 58  --DTDAAANAIADDRFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+ +  +SA ++VN+ + +DL+R+    GE K A  IA AI+  R   P 
Sbjct: 116 TRFEGTLDMRMNQNATVSAKEIVNEYDEEDLSRLFFNYGELKNAKAIARAIINYRAQKPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           Q   +L   ++  +   K N+     + +QA+RI VN E+E L   L      +K GG +
Sbjct: 176 QLGSELQEAVKSFLPKFKENK--VLAQIYQAIRIEVNGEMEALESFLLQLPDVVKLGGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   ++ PT  ++A N R
Sbjct: 234 SLISYHSLEDRAVKRFIRDGQLEGTPEKDWFGNVSVP--FKKV-GGLITPTDSEIAMNNR 290

Query: 306 SRSAKLRAGMRTVE 319
           +RSAKLR   R   
Sbjct: 291 ARSAKLRIAERINA 304


>gi|171057205|ref|YP_001789554.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6]
 gi|263456313|sp|B1XY20|RSMH_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170774650|gb|ACB32789.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6]
          Length = 325

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  V LD T+G GG+SR   +       +IA+DRDP A++  + 
Sbjct: 11  HRTVLLHEAVDALVQRPAGVYLDGTYGRGGHSRLILERLDPAGRLIAIDRDPEALANARS 70

Query: 77  -TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              R    +FS+  A F++ +  + +     +DG++ DLG+SS QID  +RGFSF+  GP
Sbjct: 71  GETRIDDPRFSIHHARFAEFESVLDEAGVGQLDGLLLDLGISSPQIDNPERGFSFRFDGP 130

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA++ +  A  + +  ++   GEE+ A  +A AIV RR+          
Sbjct: 131 LDMRMDPTRGQSAAEFLASAPFERIKEVVRDYGEERFADAVAKAIVARREEGRPVQRTAE 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++     PATR+FQALRI VN E+EE+ QGL  A   L  GG L V++FH
Sbjct: 191 LAALVAGAVKTRERGQDPATRTFQALRILVNAELEEVEQGLNRALARLAPGGRLAVIAFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK F A  + +V   R M  +   P + +++ +  + P + +VA N R+RSA L
Sbjct: 251 SLEDRIVKTFIARHAREV-YDRRMPYATPAPLLMRAVAR--IKPGEAEVAANPRARSAIL 307

Query: 312 RAGMRTVER 320
           R   RT   
Sbjct: 308 RVAERTDVP 316


>gi|77408183|ref|ZP_00784928.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1]
 gi|77173198|gb|EAO76322.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1]
          Length = 298

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 10/296 (3%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QFS 86
           L+  P    +DAT G  G+S           ++ A D+D  A+      ++ Y +  Q +
Sbjct: 2   LDIKPDGTYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDIAHIRLKKYVDTGQVT 61

Query: 87  LFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGI 142
             +  F  L      +    ++G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    +
Sbjct: 62  FIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSL 121

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +L+ +I+ +    
Sbjct: 122 TAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSAK 181

Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+ 
Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQL 241

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           F   S   +        +      + + +K ++P+QE++  N R+ SAKLR   R 
Sbjct: 242 FKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRI 297


>gi|261838057|gb|ACX97823.1| hypothetical protein KHP_0616 [Helicobacter pylori 51]
          Length = 308

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 168/310 (54%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       SG++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESGLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKITERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|319953733|ref|YP_004165000.1| ribosomal RNA small subunit methyltransferase h [Cellulophaga
           algicola DSM 14237]
 gi|319422393|gb|ADV49502.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           algicola DSM 14237]
          Length = 302

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL++ I  LN     + +D TFG GG+S            + A D+D  A+  
Sbjct: 1   MSYHNPVLLKESIDGLNIKSDGIYVDVTFGGGGHSTEILSRLGAKGKLYAFDQDEDALKN 60

Query: 74  GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      E+F L    F   SQ   +   K VDG++ D GVSS Q D  +RGFS +  
Sbjct: 61  AID-----DERFVLIHENFRFISQFLKFYGIKKVDGILGDFGVSSHQFDVAERGFSTRFD 115

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRMS    +SA DVVN     DL R+L   G+ + A+ IA AI+  R+  P +TT 
Sbjct: 116 ADLDMRMSKRNAVSAYDVVNTYAYDDLRRVLFQYGDLRNANAIATAIIANREETPIKTTD 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L S +++ +     ++I    + +QA+RI VN EIE + + L      L   G L V+S
Sbjct: 176 QLKSGLKQFLPARVEHKI--LAQIYQAIRIEVNQEIEVIKEFLLQVPDLLNEEGRLSVIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK FF S   +    +    + + P   + +   + VP+++++A N R+RSA
Sbjct: 234 YHSLEDRLVKNFFRSGKFEGEPDKDFYGNMSLP--LKKV-GGLTVPSKKEIAGNNRARSA 290

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 291 KLRIAEK 297


>gi|256825484|ref|YP_003149444.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM
           20547]
 gi|256688877|gb|ACV06679.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM
           20547]
          Length = 335

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            T   HVPV+L +++ LL PA   V     LD T G GG++ +  +      V+ +DRDP
Sbjct: 10  PTSTRHVPVMLPRILDLLAPALDGVDGAVHLDGTLGMGGHAEALLERFGHARVVGIDRDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  +  +F     T+ ++   +          ++FDLGVSS+Q+D   RGF
Sbjct: 70  QAIELASERLARFGHRFVAHHGTYDEVGPALDRLGVDSAQSMLFDLGVSSLQLDEVGRGF 129

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ ++ PLDMRM+ + G SA+DV+N     DL R+L   GEE+ A +IA A+++ R++ P
Sbjct: 130 SYSRNAPLDMRMNPTVGQSAADVLNTYGHGDLARVLKEYGEERFAGKIASAVLRERETEP 189

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F  +  L  L+++TV   S+    HPA R+FQALRI VN+E+   A  +  A   L  GG
Sbjct: 190 FTDSARLVELLERTVPAASQRTGGHPAKRTFQALRIEVNSELSIWATTVHRALDHLAVGG 249

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+S+HSLEDRL K+ FA+ +         +    H    +  T+    P + + A N
Sbjct: 250 RLAVLSYHSLEDRLTKQAFAAGATSSAPEGLPVELPEHAPWLRLATRGAEQPDEGERAVN 309

Query: 304 RRSRSAKLRAGMRT 317
           RRS SA+LR   RT
Sbjct: 310 RRSSSARLRVAERT 323


>gi|171316199|ref|ZP_02905422.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5]
 gi|171098613|gb|EDT43410.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5]
          Length = 313

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +V  N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPSLKIISR--QFPSEAEVVANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|269958801|ref|YP_003328589.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel]
 gi|269848631|gb|ACZ49275.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel]
          Length = 291

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 179/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  GK+ +DATFG GGYSR   +     V A+D+D        E +
Sbjct: 3   HKPVLLNEVMETLSPQDGKIYIDATFGGGGYSRKMLEMARCAVYAIDQDITVKEYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + SL  + FS+L++ +   G++    +VFDLG S+MQ+    RGFSF KSG LDM
Sbjct: 63  QSFPGRLSLAISKFSRLREVMLSFGINRVDGIVFDLGTSAMQLADPSRGFSFMKSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S   +A+  VN    K++  I+   G E+++ ++A AIV  RQ     +T+DL+ +
Sbjct: 123 RMCSSSQRNAALFVNTVLEKEMADIIYHYGGERRSRKVARAIVDARQKRKINSTEDLAEI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A K L+ GG ++V SFHSLE
Sbjct: 183 IRSVVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAASKLLRVGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+ F S                    F  + KK + PT E++  N RSRS KLRA 
Sbjct: 243 DRVVKQKFKSLCDMG---------------FSLVNKKAIRPTDEEIRDNPRSRSGKLRAI 287

Query: 315 MRTV 318
           +R  
Sbjct: 288 VRVE 291


>gi|291514761|emb|CBK63971.1| S-adenosyl-methyltransferase MraW [Alistipes shahii WAL 8301]
          Length = 300

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H PVLLE+ + LL   P     D TFG GG+SR           +   D+D   + 
Sbjct: 1   MSQYHTPVLLEESVGLLAVEPAGTYADLTFGGGGHSRRILSDLGPEGRLYGFDQDRDTLE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 R    +F   ++ F  L+          VDG++ DLGVSS   D  +RGFSF+ 
Sbjct: 61  N-----RPDDARFHYVESNFRFLRGALRLRGVTEVDGILADLGVSSHHFDAVERGFSFRG 115

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  G  +A+DVVN    +DLTRILG  GE +   ++A+ +VK R +AP  TT
Sbjct: 116 EAPLDMRMNQRGRLTAADVVNDYTAEDLTRILGDWGEVETPWKVANCLVKARAAAPVTTT 175

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L   ++      K +     T+ FQALRI VN E+E L   L  + + LK GG L+V+
Sbjct: 176 AQLVGAVKPCT--PKKDEAKFLTKLFQALRIEVNGEMEALKMALEQSLRVLKPGGRLVVI 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK F  S +      +     +  P  F  +T+K V P+ E++  N RSRS
Sbjct: 234 SYHSLEDRLVKNFMRSGNFSGQVEKDFFGRSQAP--FDLVTRKAVTPSAEELDRNPRSRS 291

Query: 309 AKLRAGMR 316
           AKLRA ++
Sbjct: 292 AKLRAAVK 299


>gi|258649007|ref|ZP_05736476.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259]
 gi|260850623|gb|EEX70492.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259]
          Length = 312

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 158/309 (51%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA---VS 72
            H+PVLL+  +  LN  P    +D TFG GG+SR   +       ++A D+D  A   + 
Sbjct: 8   YHIPVLLQTTVDGLNVRPDGCYVDCTFGGGGHSREILRRLGPNGRLLAFDQDADAQRNIP 67

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            G++ +   +  F            Y     VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 68  AGEDRLTFVQSNFRYLP----NWLHYYGYAQVDGILADLGVSSHHFDAADRGFSFRFEGA 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA+ VVN  + + L  +  + GE     R+A AI+K R +AP +  + L
Sbjct: 124 LDMRMNKRAHTSAAGVVNTYSEEQLANLFYLYGELNNGRRLAAAIIKARAAAPIERVEQL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++   +  ++  +     + FQALRI VN+E+E L   L +A   LK GG L ++++H
Sbjct: 184 VDVVTPYLGAARAKK--DMAKVFQALRIEVNHEMEALEAMLTAALTLLKPGGRLAILTYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + +      +    +   P   + +  +V+ P + ++  N RSRSAKL
Sbjct: 242 SLEDRLVKNFIKAGNATGKVEQDFYGNRLAP--MKPVNGRVIRPDEAEMNANPRSRSAKL 299

Query: 312 RAGMRTVER 320
           R G    ER
Sbjct: 300 RIGECIAER 308


>gi|42559426|sp|P60397|RSMH_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 304

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 166/310 (53%), Gaps = 14/310 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           ++ T  +H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A
Sbjct: 1   MNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +  ++ +  +     +  + FS L+  +       +DG++FDLG+SS QID   RGFS+
Sbjct: 61  CTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFSY 119

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             + PLDMRM+ +  I+A  ++N  +   L  I  + GE K A+ +A  I+K+R      
Sbjct: 120 LHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQRPLC--- 176

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+ DL ++  +   F    + H A + FQALRI VN E+E L Q L  +   LK   +++
Sbjct: 177 TSYDLVAITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMIV 233

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK FF   S  V+  + M  +         ITKK  +P++E++  N RS
Sbjct: 234 VISFHSLEDRIVKHFFKKNSTFVL-PKKMPITIMPQTPLSIITKKAFLPSEEEMQNNSRS 292

Query: 307 RSAKLRAGMR 316
            SAKLR  ++
Sbjct: 293 ISAKLRVAVK 302


>gi|319791660|ref|YP_004153300.1| s-adenosyL-methyltransferase mraw [Variovorax paradoxus EPS]
 gi|315594123|gb|ADU35189.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus EPS]
          Length = 307

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 165/309 (53%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            H  VLL + +  L   + A     +DATFG GG++R+          +IA D+D  AV+
Sbjct: 6   THTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDAEAVA 65

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +   D  V+G++ DLGVSS QID   RGFSF+  GP
Sbjct: 66  EAARI---SDARFSIRHQGFRSLGELP-DASVNGLLMDLGVSSPQIDNPVRGFSFRFDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S ++ +  A ++ +  ++   GEE+ A +IA AIV RRQ     +T   
Sbjct: 122 LDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPISTTTE 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQA RIF+N E+EEL Q L ++   L+ GG L V+SFH
Sbjct: 182 LAELVAGTVKTREQGQNPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLAVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +        ++ +  + P++++V  N RSRSA L
Sbjct: 242 SLEDRIVKQFIAKHSKEV-YDRRAPFAAPKVMKLNALER--IKPSEDEVRGNPRSRSAIL 298

Query: 312 RAGMRTVER 320
           R   RT   
Sbjct: 299 RVAERTEAN 307


>gi|330997819|ref|ZP_08321654.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT
           11841]
 gi|329569707|gb|EGG51472.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT
           11841]
          Length = 302

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
               HVPVLL++ +  L   P  V  D TFG GG+SR+         ++ + D+D  A +
Sbjct: 3   EAVYHVPVLLKECVDGLVVNPAGVYADVTFGGGGHSRAIVSRLDTAGHLYSFDQDEDAEA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                      +F+  ++ F  L++++       +DG++ DLGVSS   D  +RGFSF+ 
Sbjct: 63  N-----IVADGRFTFVRSNFRYLKNWMRYYGVGELDGLLADLGVSSHHFDDAERGFSFRF 117

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+    ++A+DV+N    + L  I  + GE K A ++A  +VK R     +TT
Sbjct: 118 DGRLDMRMNQRAQLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++   +++      +  +     + FQALRI VN E++ L + L +A + L+ GG L+V+
Sbjct: 178 EEFMEVVKPLFERDREKK--ELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVL 235

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK      +G V   R            +++  KV+VP +E+   N RSRS
Sbjct: 236 TYHSLEDRMVKNLVK--TGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 294 AKLRIAEK 301


>gi|39939221|ref|NP_950987.1| hypothetical protein PAM_735 [Onion yellows phytoplasma OY-M]
 gi|39722330|dbj|BAD04820.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 342

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 167/311 (53%), Gaps = 14/311 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPF 69
           +++ T  +H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  
Sbjct: 38  SMNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVE 97

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +  ++ +  +     +  + FS L+  +       +DG++FDLG+SS QID   RGFS
Sbjct: 98  ACTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFS 156

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  + PLDMRM+ +  I+A  ++N  +   L  I  + GE K A+ +A  I+K+R     
Sbjct: 157 YLHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQRPLC-- 214

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T+ DL ++  +   F    + H A + FQALRI VN E+E L Q L  +   LK   ++
Sbjct: 215 -TSYDLVAITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMI 270

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFHSLEDR+VK FF   S  V+  + M  +         ITKK  +P++E++  N R
Sbjct: 271 VVISFHSLEDRIVKHFFKKNSTFVL-PKKMPITIMPQTPLSIITKKAFLPSEEEMQNNSR 329

Query: 306 SRSAKLRAGMR 316
           S SAKLR  ++
Sbjct: 330 SISAKLRVAVK 340


>gi|217967641|ref|YP_002353147.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724]
 gi|263446377|sp|B8E088|RSMH_DICTD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217336740|gb|ACK42533.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724]
          Length = 295

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 27/312 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H PV+L++VI  L  +PGK+++DAT G GG+S    +       +I +DRD  
Sbjct: 1   MEEIEIIHKPVMLKEVIHYLKLSPGKIVVDATLGLGGHSSEILRELKGEGLLIGIDRDEE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
            ++  +E +R     F LF  T+ ++Q+ + +     +D ++FDLG SS  I+  +RGFS
Sbjct: 61  VLNLARERLRKIANNFVLFNTTYDKVQEILKELKLSFIDAILFDLGFSSFHIEKSERGFS 120

Query: 127 FQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           F +            + ++A+D++N  N  +L+ +    GEE  + ++A  IV+RR+   
Sbjct: 121 FMRPEEPLDMRYSKDTTLTAADILNSFNELELSNLFWEYGEEPLSRKLAKKIVERRKEKK 180

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F   +DL  ++++ +      + H AT+ FQALRI VN+E+  L + L      L   G 
Sbjct: 181 FVYVKDLLEVVEEVIP---KRKRHEATKVFQALRIVVNDEVNILKRALDQIPFILAPRGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+++HS+EDR+VK FF S S K+                  + KKV+ P+  ++  NR
Sbjct: 238 IVVLTYHSIEDRVVKNFFKSHSDKIFP----------------VNKKVIRPSVNEIRENR 281

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLR G R
Sbjct: 282 RARSAKLRVGER 293


>gi|222112157|ref|YP_002554421.1| s-adenosyl-methyltransferase mraw [Acidovorax ebreus TPSY]
 gi|263447303|sp|B9MFS0|RSMH_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221731601|gb|ACM34421.1| S-adenosyl-methyltransferase MraW [Acidovorax ebreus TPSY]
          Length = 308

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 164/309 (53%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL++ +  L     AP    +D TFG GG+SR   +       ++A D+D  A+  
Sbjct: 7   HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                     +FS+    FS L +      V GV+ DLGVSS QID   RGFSF+  GPL
Sbjct: 67  AARI---TDARFSIRHQGFSHLGELPAA-SVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G S ++ +  A    +  ++   GEE+ A  IA AIV RR      ++    
Sbjct: 123 DMRMDTTRGQSVAEWLADAEAAQIAEVIRDYGEERFAGPIAKAIVARRTERGPISSTAEL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I      ++    +PATR+FQALRIF+N E+EEL Q L  + + L+ GG L+V+SFHS
Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALEGSLRVLRPGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F A  S +V   R    +   P   +++ +  + P+ ++VA N R+RSA +R
Sbjct: 243 LEDRIVKQFIAQHSKEV-YDRRAPFAPPQPMRLKALER--IKPSTDEVAANARARSAVMR 299

Query: 313 AGMRTVERS 321
              RT   +
Sbjct: 300 VAERTEVPA 308


>gi|317473246|ref|ZP_07932543.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899341|gb|EFV21358.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 303

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 158/299 (52%), Gaps = 9/299 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  VLL++ I  L   P  + +D T G GG++             I +D+D  A+    
Sbjct: 4   EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  ++++ ++ +  +  +   + D     VDG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA D+VN  + ++L  I+   GE+K A  IA  I   R+  P +TT  L
Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKVPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI  N E+E L   L    + L   G L +++F
Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+ F           +    +  + +  + IT+K ++PT+E++  N+R++S
Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKS 302


>gi|50955157|ref|YP_062445.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|54036175|sp|Q6AE56|RSMH_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50951639|gb|AAT89340.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 325

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 170/320 (53%), Gaps = 11/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIA 63
           MS  IH  I  H+PVLLE+ I LL PA   PG VI+DAT G GG+S           ++ 
Sbjct: 1   MSDDIHGDI--HLPVLLERCIELLAPALQEPGAVIVDATLGMGGHSAGILARFPQATLVG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDC 120
           LDRDP A++   E +  + ++  L    +  +++ +       V GV+FDLGVSS+Q+D 
Sbjct: 59  LDRDPDALAIAGERLARFGDRVHLVHTVYDGIREALDGLGIAEVQGVLFDLGVSSLQLDR 118

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ K  PLDMRM  +   +A  V+ +    DL RI    GEEK A+R A  IV  
Sbjct: 119 VERGFSYSKDAPLDMRMDGTSDLTAERVLAEYPEADLRRIFRDYGEEKLAARYAQRIVAA 178

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           RQ  P   + +L  L+Q+    +   + HPA R FQALRI VN E+  L + L +A  AL
Sbjct: 179 RQQGPITRSGELVHLLQRATPAAIARQGHPAKRVFQALRIEVNQELAVLERALPAAVDAL 238

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG L+V S+ SLEDR+VK+   +RS         +    H    + + +   +   ++
Sbjct: 239 AVGGRLVVESYQSLEDRIVKRELQTRSRSSAPAGLPVELPEHRPELRLLIRGAELADDDE 298

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
            A N R+   +LRA  RT  
Sbjct: 299 KAANPRAAPVRLRAAERTRA 318


>gi|187930165|ref|YP_001900652.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J]
 gi|262825235|sp|B2UCY5|RSMH_RALPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187727055|gb|ACD28220.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J]
          Length = 319

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/324 (34%), Positives = 177/324 (54%), Gaps = 23/324 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VLL++ +  L      + +D TFG GG+SR   +    G  ++A D+
Sbjct: 1   MTTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A++           +F++   +F+Q+    D    + V GV+ DLG+SS QID G R
Sbjct: 61  DPAAITEAG---TVEDARFAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGAR 117

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-- 180
           GFSF+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR  
Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQ 177

Query: 181 --QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
                P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL++A   
Sbjct: 178 SGDRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFDR 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKV 292
           L+ GG L+V+SFHSLEDR+VK+F  + +    +    +               + + +  
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR-- 294

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           V P++ +V+ N R+RSA +R   R
Sbjct: 295 VKPSEAEVSANPRARSAIMRVAER 318


>gi|313206538|ref|YP_004045715.1| s-adenosyl-methyltransferase mraw [Riemerella anatipestifer DSM
           15868]
 gi|312445854|gb|ADQ82209.1| S-adenosyl-methyltransferase MraW [Riemerella anatipestifer DSM
           15868]
 gi|315023521|gb|EFT36525.1| S-adenosyl-methyltransferase mraW [Riemerella anatipestifer RA-YM]
 gi|325336013|gb|ADZ12287.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Riemerella anatipestifer
           RA-GD]
          Length = 297

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 161/306 (52%), Gaps = 17/306 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H  VLL++ +  L      V +D TFG GG+SR               D+D  A+    
Sbjct: 2   YHQSVLLKESVDALVLNADGVYVDCTFGGGGHSREIVSRLSSAGRHFGFDQDLDALEN-- 59

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +   E+F++    F  L++         VDG++ DLGVSS Q D  +RGFS +   P
Sbjct: 60  ---KLDDERFTIINQNFRFLENSLMLYGVTQVDGILADLGVSSHQFDAAERGFSTRSDAP 116

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G++A  VVN+   + L  I    GE ++A R+A  +V  R+S P +TT+DL
Sbjct: 117 LDMRMNVMQGLNAQKVVNEYEEEHLADIFYHYGELREARRLARELVHYRKSKPIKTTEDL 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+     Y   + +     + FQA+RI VN E+E L + L  A + LK GG L+V+S+H
Sbjct: 177 KSVF---KYIPPHKQNKFFAQLFQAIRIEVNQELEALKEMLEQAYRILKPGGRLVVISYH 233

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F  +        R +     +   F+ +  K  VPT+E++  N R+RSAK+
Sbjct: 234 SLEDRLVKRFLKNGMFDGEPERDIY--GNYTKAFELLQSKAFVPTEEEIEANSRARSAKM 291

Query: 312 RAGMRT 317
           R G++ 
Sbjct: 292 RVGIKV 297


>gi|300864772|ref|ZP_07109623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Oscillatoria sp. PCC 6506]
 gi|300337241|emb|CBN54771.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Oscillatoria sp. PCC 6506]
          Length = 306

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 160/319 (50%), Gaps = 28/319 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--I 62
           S K + ++   +   H+PVL  ++I  L    G   LDAT G GG++R       +V  +
Sbjct: 7   SEKEVVASKVESGVYHIPVLGPQLIEGLAVRAGGHYLDATVGGGGHTRLILAAAPDVTIV 66

Query: 63  ALDRDPFAVSCGQ----ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
           A+D+D  A++  +    E +     +   +   F+       +   DG++ DLGVSS Q+
Sbjct: 67  AIDQDLDAIAFCKQQLAEFLAPNSARIQFWHGNFASYPA--KESTFDGIIADLGVSSAQL 124

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D   RGFSF+    LDMRM+     +A+++VN      L  I    GEE+ + RIA  IV
Sbjct: 125 DAPGRGFSFRHHANLDMRMNQQQSLTAAEIVNHWEEVKLADIFYTYGEERLSRRIARRIV 184

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                    TT+   ++ +      +  RIHPATR+FQALRI VN+E+  +   L+ A +
Sbjct: 185 G--DRPFQTTTELAEAIARCVPPKYRYGRIHPATRTFQALRIAVNSELTAVETFLKQAPQ 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            LK GG + ++SFHSLEDRL K      S                 + + +TKK + P  
Sbjct: 243 WLKPGGRMGIISFHSLEDRLAKHELKGSS-----------------LLRVLTKKPIQPAT 285

Query: 298 EDVAFNRRSRSAKLRAGMR 316
           E+VA N R+RSAKLR   R
Sbjct: 286 EEVAKNPRARSAKLRLAER 304


>gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
 gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
          Length = 319

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 176/312 (56%), Gaps = 7/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      HVPVLL +V+ LL PA   P  V++DAT G GG++++  +      V+ +DRD
Sbjct: 1   MSAQEPQHVPVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             A+   +  +    ++     A F +++  + D+  +G + DLGVSSMQ+D   RGF++
Sbjct: 61  EKAIEVARARLGALADRVRFVHARFDEVEHALGDEAANGYLLDLGVSSMQLDQAQRGFAY 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K  PLDMRM  S  ++A++V+     ++L R+L   GEE+ ASRIA AIV+RR +AP  
Sbjct: 121 SKEAPLDMRMDSSAELTAAEVLATYEERELARVLRTYGEERFASRIAAAIVRRRSTAPLS 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           ++ +L  LI   +    K    HPA R+FQALR+ VN+E+  L   L  A  AL   G +
Sbjct: 181 SSAELVRLIDDAIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAALPKALAALAPSGRI 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++ SLEDR+VK+ FA  +     +   +      A F S+T+   + + E++A N R
Sbjct: 241 VVLAYQSLEDRIVKEAFARATTSRTPIGLPVELPGFAAEFVSLTRGAELASDEEIAQNSR 300

Query: 306 SRSAKLRAGMRT 317
           + S +LR   R 
Sbjct: 301 AASVRLRGVERI 312


>gi|237749177|ref|ZP_04579657.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13]
 gi|229380539|gb|EEO30630.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13]
          Length = 319

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 173/312 (55%), Gaps = 18/312 (5%)

Query: 19  DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
            H  VLL++ +  L         + +D TFG GG+SR   +       +IA D+DP AVS
Sbjct: 5   THDSVLLKEAVDALAIEGDRVNGIFIDGTFGRGGHSRLILERLGGEGRLIAFDKDPEAVS 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129
              +       +F +   +F+ L + + +KG++ +   + DLG+SS Q++   RGFSF+ 
Sbjct: 65  VAGKI---TDPRFEIVHKSFADLGEVLEEKGIEMIDGILLDLGISSPQVEDAARGFSFRL 121

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G+SA++ +     + +  ++   GEE+ A +IA AIV  R   P  +T
Sbjct: 122 EGPLDMRMDSTRGLSAAEWLAVETEEKIAEVIHQYGEERFAFQIAKAIVACRTIKPIDST 181

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V   +  + +PATR+FQA+RIF+N E+EEL  GL++A + L+  G + V+
Sbjct: 182 KQLAEIVAGAVKTFEKGK-NPATRTFQAIRIFINRELEELEIGLQAAWQHLRLNGRMSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VKKF + ++   M  R +     +      + + K    P++ +V+ N RS
Sbjct: 241 SFHSLEDRIVKKFLSGKAKVDMPDRRLPIRAIDLPQPEMKLLGK--QKPSKAEVSKNARS 298

Query: 307 RSAKLRAGMRTV 318
           RSA LR   R  
Sbjct: 299 RSAILRIATRVS 310


>gi|124265647|ref|YP_001019651.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1]
 gi|167011833|sp|A2SCX7|RSMH_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|124258422|gb|ABM93416.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1]
          Length = 318

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 187/317 (58%), Gaps = 15/317 (4%)

Query: 13  IHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRD 67
           ++  +G   H  VLL + +  L  +P    +D T+G GG+SR           ++A+DRD
Sbjct: 1   MNQGVGPWQHTTVLLHEAVDALVHSPDGYYVDGTYGRGGHSRLILSKLSAAGRLLAIDRD 60

Query: 68  PFAVSCGQE-TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           P AV+       R    +F +  A +S+L   +  +    +DG++ D+GVSS QID  +R
Sbjct: 61  PDAVAHATSGAARVTDPRFHIEHAPYSELPALLAARGVSRIDGLLLDIGVSSPQIDNPER 120

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQ 181
           GFSF+ SGPLDMRM    G SA+D + +A+ +++  ++   GEE+ A+ IA A + +R  
Sbjct: 121 GFSFRASGPLDMRMDPTRGESAADYLARADEREIAAVIRDYGEERFATAIARALVARRLA 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P +TT++L+ L+ + V   +  + +PATR+FQALRIFVN E+ +L QGL +A + LK 
Sbjct: 181 GRPVRTTEELAELVAQAVKTREPGQ-NPATRTFQALRIFVNAELTQLEQGLAAALQCLKP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V+SFHSLEDR+VK F AS S  V+  R    +   P   +++ +  + P  ++VA
Sbjct: 240 GGRLVVISFHSLEDRIVKTFIASHSKAVVD-RRAPFAPPAPMRLRALAR--LKPGADEVA 296

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RSA LR   RT 
Sbjct: 297 ANPRARSAILRVAERTD 313


>gi|227431984|ref|ZP_03914004.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352269|gb|EEJ42475.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 312

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + IALL+  P    +DAT G GG++    K      + + D+D  A+    E
Sbjct: 4   EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNVE 63

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  +    F  L   + D     V+G+V+DLGVSS+Q D G RGFS++   
Sbjct: 64  QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVNGIVYDLGVSSVQFDDGQRGFSYKYDA 123

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM      +A  +VN+    +L R+L   GE++   +IA  I + R++AP  TT +
Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA RI VN+E+  L   L  A + L   G + V++
Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  +S        +        A ++S+T+K + P+ E++A N R+ S
Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYESLTRKPISPSTEEMAINHRAES 303

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 304 AKLRGIRR 311


>gi|66769818|ref|YP_244580.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81304228|sp|Q4UQW3|RSMH_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|66575150|gb|AAY50560.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 342

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 172/308 (55%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           AV+  Q T      + S+   +F++L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AVAVSQHTF-GGDARVSIHPGSFARLVQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++A N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDSELAVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|111018109|ref|YP_701081.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1]
 gi|123340963|sp|Q0SHR3|RSMH_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110817639|gb|ABG92923.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1]
          Length = 338

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 174/322 (54%), Gaps = 18/322 (5%)

Query: 20  HVPVLLEKVIALL-------NPAPGK-VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H+PVLL +   LL       +P  G  V++DAT G GG+S  F +      +IALDRDP 
Sbjct: 17  HIPVLLHRADELLGPALTVNDPQGGGAVMIDATLGLGGHSEHFLRTYPQLRLIALDRDPH 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+      +  + ++ +     +  ++D          + V G++FDLGVSSMQ+D  DR
Sbjct: 77  ALEIAGGRLAPFADRITFVHTRYDGIEDALDQAGLPAQESVHGILFDLGVSSMQLDESDR 136

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + GI+A++V+N  +  DL RIL   GEE+ A +IA  IV++R  
Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEIVRQRAK 196

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +++   ++    HPA R+FQALR+ VN E++ L   + +A  AL  
Sbjct: 197 EPFTTSAALVELLYRSIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+    RS         +        F+ +T+     ++++V 
Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEVE 316

Query: 302 FNRRSRSAKLRAGMRTVERSIE 323
            N RS   +LRA  R   RS  
Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338


>gi|315504598|ref|YP_004083485.1| s-adenosyl-methyltransferase mraw [Micromonospora sp. L5]
 gi|315411217|gb|ADU09334.1| S-adenosyl-methyltransferase MraW [Micromonospora sp. L5]
          Length = 391

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 11/310 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL P    PG+ + +DAT G  G++ +      +  +I LDRD  A+
Sbjct: 28  GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +       +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 88  AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G++A +VVN  +  DL R+L + GEEK A +IA AI++ R+     +
Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L++  +    +    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K+  A R      V   +        F+ +++   +P + +VA N R+
Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327

Query: 307 RSAKLRAGMR 316
            S +LRA  R
Sbjct: 328 ASVRLRAAER 337


>gi|302868932|ref|YP_003837569.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC
           27029]
 gi|302571791|gb|ADL47993.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC
           27029]
          Length = 391

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 11/310 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL P    PG+ + +DAT G  G++ +      +  +I LDRD  A+
Sbjct: 28  GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +       +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 88  AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G++A +VVN  +  DL R+L + GEEK A +IA AI++ R+     +
Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L++  +    +    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K+  A R      V   +        F+ +++   +P + +VA N R+
Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327

Query: 307 RSAKLRAGMR 316
            S +LRA  R
Sbjct: 328 ASVRLRAAER 337


>gi|325923945|ref|ZP_08185535.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865]
 gi|325545571|gb|EGD16835.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865]
          Length = 352

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQPPAAHVPVLYTQVLDGLQVIENGTYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPE 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVAEQAF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 130 DGPLDMRMDPDVGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRTEQPLLRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI  +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 190 AQLAELI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALGALKPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q +T   V    ++++ N R+RS
Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVTG-AVKADFDELSVNPRARS 307

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 308 AVLRVAEK 315


>gi|300774439|ref|ZP_07084302.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC
           35910]
 gi|300506254|gb|EFK37389.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC
           35910]
          Length = 297

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 161/306 (52%), Gaps = 17/306 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H PVLL++ +  L   P  + +D TFG GG+SR           + + D+D  A+    
Sbjct: 2   YHNPVLLKQSVDDLVTNPDGIYVDCTFGGGGHSREILSRLSDKGRLFSFDQDLDALKNTI 61

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F+L    F  L++         VDG++ DLGVSS Q D  DRGFS + + P
Sbjct: 62  D-----DPRFTLVNQNFRFLENSLLMYGVSQVDGILADLGVSSHQFDEADRGFSTRSNAP 116

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A  V+N+   ++L  +    GE ++A ++A  IV  R++   +TT+DL
Sbjct: 117 LDMRMNVMQNLDAKRVINEYEEEELADLFYHYGELREARKLAREIVHHRKTKSIETTEDL 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             L    +   K N+     + FQA+RI VN E+E L + L  A   LK  G L+V+S+H
Sbjct: 177 KKLF-SYIPPHKVNK--FYAQLFQAIRIEVNQELEVLKEMLVQAYNVLKPEGRLVVISYH 233

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F  +   +    R +     +   F+ +  K ++P  +++  N R+RSAK+
Sbjct: 234 SLEDRLVKRFLKNGMFEGEPERDIY--GNYKKAFELVKSKAIIPDDKEIEENSRARSAKM 291

Query: 312 RAGMRT 317
           R G++ 
Sbjct: 292 RTGIKV 297


>gi|194290821|ref|YP_002006728.1| s-adenosyl-methyltransferase mraw [Cupriavidus taiwanensis LMG
           19424]
 gi|263446166|sp|B3R6W7|RSMH_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193224656|emb|CAQ70667.1| S-adenosyl-dependent methyl transferase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 329

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 120/327 (36%), Positives = 179/327 (54%), Gaps = 23/327 (7%)

Query: 9   MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63
           MS           H  VLL++ +  L   P  V +D TFG GG+SR+          ++A
Sbjct: 1   MSPTGTPATPALQHRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122
            D+DP A++           +FS+  A+F+ + +       V GV+ DLG+SS QID   
Sbjct: 61  FDKDPAAIAEAGTIK---DARFSIEHASFAAMAERLAGRGHVAGVLLDLGISSPQIDEAA 117

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    GI+A+  + QA+ +D+ R++   GEE+ A +IA AIV RR 
Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRS 177

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +    P  TT DL++L+ K V  ++     PATR+FQALRI VN E+E+L +GL++A  
Sbjct: 178 ESGDGGPVATTADLAALVAKAV-KTREKGQDPATRTFQALRIHVNQELEDLERGLKAAYD 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291
            L+ GG L+V+SFHSLEDR+VK+F A+ +         +       ++      + + + 
Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318
              P  E+VA N R+RSA +R   +  
Sbjct: 296 -YKPGAEEVAANPRARSAVMRVAEKLA 321


>gi|257784283|ref|YP_003179500.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469]
 gi|257472790|gb|ACV50909.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469]
          Length = 327

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L +V+  L+P PG+V+ D T G  G++    K+       I +D+D  A      
Sbjct: 14  HQPVMLAEVLRELDPKPGEVVCDCTLGGAGHTVEMAKLIAPDGLSIGIDQDAMAHQAAAA 73

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++      +F   +  F  L + +      GVD  +FD+GVSS Q+D  +RGFS+ +  
Sbjct: 74  RLKQEVPNAEFLPLKGNFGDLDELLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 133

Query: 132 PLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM     +  A +V+N  N  DL RIL I G+EK ASRIA  IV+ R+  P QTT 
Sbjct: 134 PLDMRMDPGKQTPTAQEVINTYNEADLARILRIYGDEKFASRIARRIVQTREKRPIQTTF 193

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +  + + +  HPA ++FQALRI VN+E+E L +GLRSA      GG + V+
Sbjct: 194 ELVEVIKAAIPAAARRHGGHPARKTFQALRIEVNHELEVLERGLRSAIAWANPGGRICVI 253

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK  F+  S   +    +         +   IT+K +V T E++  N R+R
Sbjct: 254 SYHSLEDRIVKHVFSELSQGCICPPDLPVCMCGQVPIVDVITRKPLVATPEEIERNPRAR 313

Query: 308 SAKLRAGMR 316
           SA +R  ++
Sbjct: 314 SALMRVAVK 322


>gi|91216023|ref|ZP_01252992.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC
           700755]
 gi|91186000|gb|EAS72374.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC
           700755]
          Length = 303

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 164/311 (52%), Gaps = 17/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           I      H+PVLL++ +  ++  P    +D TFG GG+S            + A D+D  
Sbjct: 2   IMTNRAYHLPVLLKESVDGMSIQPEGTYVDVTFGGGGHSAEILSRLGEKGRLFAFDQDQD 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A     E       +F+L  A F  ++ ++       VDG++ D GVSS Q D G+RGFS
Sbjct: 62  AQENSIE-----DPRFTLIPANFRFIKRFLRLEGVNEVDGILGDFGVSSHQFDKGERGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +    LDMRM  + G+ AS++VN  + + L +++   GE K + ++A AIV+RR   P 
Sbjct: 117 IRFEAELDMRMDQNTGLGASELVNTYSQEQLAQLIWQYGEIKMSRKLAKAIVERRIIEPI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           ++T+DL+ L+      +K N+     + +QA+RI VN E+E L + L    + +  GG L
Sbjct: 177 KSTKDLNDLLTPFFPPTKVNK--FLAQVYQAIRIEVNQEMEALKEFLLQTSELITKGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDRLVK+F           +    +   P  F+ +  K++ P   ++  N+R
Sbjct: 235 SLISYHSLEDRLVKRFIRDGKFSGAPEKDFYGNMLVP--FKKV-GKMITPGAAELQKNKR 291

Query: 306 SRSAKLRAGMR 316
           SRSAKLR G +
Sbjct: 292 SRSAKLRIGEK 302


>gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
 gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
          Length = 297

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 130/289 (44%), Positives = 176/289 (60%), Gaps = 7/289 (2%)

Query: 42  DATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           D TFG GGY+R+    G+  VI +DRDP A     + + DY ++       FS+L +Y  
Sbjct: 2   DGTFGNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLDEYGA 61

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRIL 160
           D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS  G SA+D+ N A+  +L  I+
Sbjct: 62  D--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQDGPSAADLCNDADEAELADII 119

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
            + GEE+ + RIA AIV  R   P  TT  L+ +++  +  SK  + HPATR+FQALRI 
Sbjct: 120 YLYGEERASRRIAKAIVDAR---PLTTTLQLAKIVEGCLPRSKPGQSHPATRTFQALRIA 176

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSN 279
           VNNE  ELA+GL +AE+ALK  G L VV+FHS+EDR+VK+F  +RSG      R+     
Sbjct: 177 VNNEYGELAEGLMAAERALKPDGQLAVVTFHSVEDRMVKRFLQARSGNTANANRYAPEIE 236

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328
                ++   +K + P + ++A N RSRSAKLR   RT   +   D   
Sbjct: 237 QVTPAWRIEKRKAIGPDEAELAENPRSRSAKLRVASRTDAPAEPIDPAK 285


>gi|330994431|ref|ZP_08318356.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter
           sp. SXCC-1]
 gi|329758431|gb|EGG74950.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter
           sp. SXCC-1]
          Length = 319

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 170/308 (55%), Gaps = 14/308 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK 82
           +L +V+  L P  G   +D TFG GGY+R+        +  +DRDP A++ GQ       
Sbjct: 2   MLAEVMDYLAPRDGGRYVDGTFGGGGYARAILASCACQLWGIDRDPAAIARGQALAHTCT 61

Query: 83  -----EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 +  L    F+ +   + +     VDG+V DLGVSS QID  +RGFSF+  GPLD
Sbjct: 62  APDGTPRLHLLHGGFAGMAALLAEAGVARVDGIVLDLGVSSYQIDQAERGFSFRMDGPLD 121

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  +G +A+DVVN     +L  I+   GEE+ + R+A AIV  R  AP   T  L+ +
Sbjct: 122 MRMGDTGPTAADVVNTLPEDELADIIYHYGEERLSRRVARAIVAARAEAPLLRTTQLADV 181

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++  V   + + I PATR+FQ LRI VN+E+ ++ + L  A + L  GG L+VVSFHSLE
Sbjct: 182 VRSVVRPDR-SGIDPATRTFQGLRIHVNDELGQIRRVLEEAPRLLAPGGRLVVVSFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           DRLVK+  A  +G+  A     P      A P  F+ +T + + P +E+   N R+RSA+
Sbjct: 241 DRLVKQAMALAAGRTPAPSRHDPRAMTQRAGPTGFRLLTGRPIRPGEEETRRNPRARSAR 300

Query: 311 LRAGMRTV 318
           LRA     
Sbjct: 301 LRALECIA 308


>gi|309792354|ref|ZP_07686822.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6]
 gi|308225575|gb|EFO79335.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6]
          Length = 317

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 170/307 (55%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ- 75
           H+ VL + V A LNP PG + LD T G GG++ +  +       +I +D DP A++  Q 
Sbjct: 16  HISVLAQPVQAALNPRPGGIYLDGTLGGGGHALAVLQAAQPDGRLIGIDADPAALAAAQA 75

Query: 76  -----ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                       + F       +Q+         DG++ DLGVSS Q+D  +RGFSF   
Sbjct: 76  RMAAANIPASSYQFFHGRFGAMAQIARQAGITSCDGILLDLGVSSPQLDWAERGFSFSAD 135

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMR+    G +A+D+VN  + + L  I+   GEE+ + +IA  IV+RR+ APF+ T 
Sbjct: 136 GPLDMRLDPTQGHTAADLVNTLDEQYLADIIFRYGEERGSRKIARLIVERRKHAPFERTA 195

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL++L+ + V      RIHPATR+FQALRI VN E+E+L   L  A   L +GG L V+S
Sbjct: 196 DLAALVARAVGRGGRERIHPATRTFQALRIAVNTELEQLEIALPQAVDLLHSGGRLAVIS 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK F  + SG              P   + ITKK +    E++A N RSRSA
Sbjct: 256 FHSLEDRIVKHFLRAESGYGGNANP------RPPRLRIITKKPLEADAEELAANPRSRSA 309

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 310 KLRVAEK 316


>gi|71894357|ref|YP_278465.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53]
 gi|88909204|sp|Q4A667|RSMH_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71851145|gb|AAZ43754.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53]
          Length = 301

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 168/310 (54%), Gaps = 15/310 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
              +H+PVLL +V+  L      + +D T G GG+S+   K      +IA D+D FA+  
Sbjct: 1   MKNNHIPVLLNEVLDNLALKENGIYIDLTLGMGGHSKEILKRIPKGKLIAFDKDDFAIKN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +T+ +    F + ++ F   ++ + +     VDG++ DLG+SS QID  +RGFS+ K+
Sbjct: 61  ASKTLSEVANNFEIIKSDFKDFKEELSNLGIYKVDGILADLGISSPQIDNAERGFSYLKN 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   SA DVVN   V+ L  IL   GE K    IA  I++ R   P  TT 
Sbjct: 121 SALDMRMDQSQKLSAYDVVNLYPVEKLEYILKTYGEVKNYKYIASKIIEAR---PINTTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L++LI+           +PA   FQA+RI VNNE++ + Q L S E  LK    L+++S
Sbjct: 178 ELANLIKSVTPQKLLKLKNPAKNVFQAIRIEVNNELDSIHQMLSSVEDLLKVNASLLIIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED++VK +F   +   +  +  I  +   A     T++ + P+++++  N RS+SA
Sbjct: 238 FHSLEDKIVKNYFQELTKPKLPSKMPIQEDKFFA-----TRR-IYPSKQELNLNSRSKSA 291

Query: 310 KLRAGMRTVE 319
           KLR   +  +
Sbjct: 292 KLRILTKIKD 301


>gi|161526013|ref|YP_001581025.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|189349270|ref|YP_001944898.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|263446911|sp|A9AJ24|RSMH_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160343442|gb|ABX16528.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|189333292|dbj|BAG42362.1| S-adenosyl-methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 313

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IGDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I +    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMR 316
            +R   R
Sbjct: 304 VMRIAER 310


>gi|154488900|ref|ZP_02029749.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis
           L2-32]
 gi|154083037|gb|EDN82082.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis
           L2-32]
          Length = 343

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           +      H PVLL   + L+ P    PG + +D T G  G+S +F K    + +I +DRD
Sbjct: 1   MTDVTTIHQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   + M      ++F+   A F      + D+    V+ V  DLG+SS+QID  +
Sbjct: 61  TEALALATKRMEMDGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +   +A  V+ + +  DL RI    GEE+ + +IA  IV+RR+
Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRTYGEERFSKQIAREIVRRRE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 TEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F              +        F+ +T+  +    E++A
Sbjct: 241 GGRLVVESYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 NNPRSASVRLRAVE 314


>gi|283798338|ref|ZP_06347491.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|291073921|gb|EFE11285.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|295092799|emb|CBK78906.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum
           K10]
          Length = 317

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 160/311 (51%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLL + +  LN  P  + +D T G GG++         G  +I LD+D  A++
Sbjct: 1   MTFSHTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ Y ++ ++ +  +  +++ +       VDG+  DLGVSS Q+D  +RGF++++
Sbjct: 61  AATERLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYRE 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                          +A D+VN  +  +L RI+   GE++ A  IA  IVK RQ    +T
Sbjct: 121 DDAPLDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIET 180

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +L+ +I+  +    +    HPA R+FQA+RI +N E++ L   + +  + L  GG L 
Sbjct: 181 AGELTEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLS 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F                     +  + +T+K ++P+ E+++ N+R
Sbjct: 241 VITFHSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKR 300

Query: 306 SRSAKLRAGMR 316
           S+SAKLR   +
Sbjct: 301 SKSAKLRVFEK 311


>gi|212702349|ref|ZP_03310477.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098]
 gi|212674227|gb|EEB34710.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098]
          Length = 334

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 171/316 (54%), Gaps = 16/316 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK------VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           H+PVL+++ +A L P           ILD T G  G+S +  +      + ALDRD  A+
Sbjct: 16  HIPVLMKETLAALQPVLDAGRDRPVRILDGTLGMAGHSCAMLQAAPMAELCALDRDEEAL 75

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +  +  + ++   +   +SQ ++ + D   + VD V+ D+GVSS+Q+D  +RGFSF 
Sbjct: 76  ELARRRLEPFGDRVHTYHCRYSQFEEALDDLGWEKVDAVLLDIGVSSLQLDEAERGFSFY 135

Query: 129 KSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             GPLDMRM       SA   VN+ N   L   +  LGEE QA RIA AIV  RQ +P  
Sbjct: 136 GDGPLDMRMDQHSGAPSAWHWVNRENFDRLKECIATLGEEPQAGRIARAIVDARQKSPID 195

Query: 187 TTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT  L++L++K    +   +   HPATR+FQALR+ VN+E+ EL + L +    L  GG 
Sbjct: 196 TTAQLAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDAILGRLSLGGR 255

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L V+SFHSLEDR+VK+     +      RH  +    H    + + KK V    +++A N
Sbjct: 256 LSVISFHSLEDRMVKQTMRYWAEGCRCPRHVPVCVCHHVPEVEILYKKPVQADDDELAVN 315

Query: 304 RRSRSAKLRAGMRTVE 319
            R+ SAKLRA  +  E
Sbjct: 316 PRASSAKLRAVEKIAE 331


>gi|317178936|dbj|BAJ56724.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F30]
          Length = 308

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                        G++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|8134813|sp|P73460|RSMH_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1652579|dbj|BAA17500.1| sll1144 [Synechocystis sp. PCC 6803]
          Length = 305

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 30/326 (9%)

Query: 1   MESKSCKTMSSAIHH-TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
           M +KS + M+          HV VL   ++  L P PG   LDAT GAGG+S    K+G 
Sbjct: 1   MGAKSMEGMNLKQTAIADFHHVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGI 60

Query: 59  -SNVIALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112
              +  +DRD  A++   E ++           + +Q  F+     +     DG++ DLG
Sbjct: 61  PLALTMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLG 118

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D GDRGFSF+ + PLDMRM  S   +A++++N  + KDL RI    GEE+ + R
Sbjct: 119 VSSPQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRR 178

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA  IV+  Q     TT    ++ +      ++ RIHPATR+FQ LRI VN+E+  L + 
Sbjct: 179 IARQIVE--QRPFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKF 236

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           +  A   LK+GG   ++SFHSLEDR+VK  F                       + +TKK
Sbjct: 237 IAQAPHWLKSGGKFGIISFHSLEDRIVKHRFRETEN-----------------LRVLTKK 279

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317
            ++  +E+   N R+RSAKLR   + 
Sbjct: 280 PIIAGEEEQRQNPRARSAKLRWAEKI 305


>gi|262276873|ref|ZP_06054666.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114]
 gi|262223976|gb|EEY74435.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114]
          Length = 329

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/331 (33%), Positives = 173/331 (52%), Gaps = 8/331 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H PV+L +V   L+    K+ILD TFG GGYS    K    S VIA+DRD   
Sbjct: 1   MSLDTIKHYPVMLREVTNFLS--DNKLILDCTFGGGGYSSEILKNYSNSKVIAIDRDIEI 58

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   ++  + Y ++F      FS++        +D  +FDLGVS  Q+    RGFSF   
Sbjct: 59  IQFAKKLEKKYLKRFVFKNLKFSEIHKVKEINQIDYFIFDLGVSHFQLKDMKRGFSFSSD 118

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
             L M M  + + A +++ + + KDL  IL   GEEK AS+IA+ I+  R++    + + 
Sbjct: 119 DSLSMSMGLTDLDAEELIRKVSEKDLKNILKFFGEEKFASKIANKIINVRKNKNISSGKK 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+      K N+ HP+T+SFQALR+ VN E+ E+ + L+   +  K    +I+V+F
Sbjct: 179 LAEIIETVK--FKKNKTHPSTKSFQALRMIVNQELLEIYKSLKFIIENCKENSTIIIVTF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLED LVKK       K    R++   S+      + +T K + P  E+V  N  SRSA
Sbjct: 237 HSLEDLLVKKIINFYGKKTSTSRYLPQDSDIKKMPIKILTNKAIKPNSEEVNVNPSSRSA 296

Query: 310 KLRAGMRTVER-SIEDDSFVHLPRLPTLSQF 339
           KLRA  +  +   I + S + + +  +L + 
Sbjct: 297 KLRAFTKICKPDFILNRSDLDMEKYFSLEEL 327


>gi|113869234|ref|YP_727723.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha H16]
 gi|123032664|sp|Q0K6L6|RSMH_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113528010|emb|CAJ94355.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 333

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 120/327 (36%), Positives = 179/327 (54%), Gaps = 23/327 (7%)

Query: 9   MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63
           MS           H  VLL++ +  L   P  V +D TFG GG+SR+          ++A
Sbjct: 1   MSPTGTPATPALRHRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122
            D+DP A++           +FS+  A+F+ + +       V GV+ DLG+SS QID   
Sbjct: 61  FDKDPAAIAEAGTIK---DARFSIEHASFAAMAERLSGRGHVAGVLLDLGISSPQIDEAA 117

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    GI+A+  + QA+ +D+ R++   GEE+ A +IA AIV RR 
Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRS 177

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  TT DL++L+ K V  ++     PATR+FQALRI VN E+E+L +GL++A +
Sbjct: 178 EPGDGGPIATTADLAALVAKAV-KTREKGQDPATRTFQALRIHVNQELEDLERGLKAAYE 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291
            L+ GG L+V+SFHSLEDR+VK+F A+ +         +       ++      + + + 
Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318
              P  E+VA N R+RSA +R   +  
Sbjct: 296 -YKPGPEEVAANPRARSAVMRVAEKLA 321


>gi|134102314|ref|YP_001107975.1| S-adenosyl-methyltransferase MraW [Saccharopolyspora erythraea NRRL
           2338]
 gi|291003724|ref|ZP_06561697.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|262826346|sp|A4FLX5|RSMH_SACEN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|133914937|emb|CAM05050.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 330

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 176/310 (56%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV++E+ + LL P       V++DAT G GG+S +       +  + LDRDP A+   
Sbjct: 19  HVPVMMERTLELLAPALSKGPAVVVDATLGMGGHSEALLAAHPELTLVGLDRDPDALRLA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++  L  A + +  + +       VDG +FDLGVSS+Q+D  DRGF++    
Sbjct: 79  GERLAPHSDRVHLVHAVYDEWAEALAGLSLSKVDGALFDLGVSSLQLDETDRGFAYAHDA 138

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +  +A+DV+N  +  +LTR+L   GEEK A+RIA AIV+ R  APF  +  
Sbjct: 139 PLDMRMDSGAPRTAADVLNTYSAGELTRVLREYGEEKFAARIAAAIVRERAKAPFDRSGR 198

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   V   S+    HPA R+FQALRI VN E+E L + L +A  +L  GG ++V+S
Sbjct: 199 LVELLYDAVPAASRRTGGHPAKRTFQALRIEVNAELEVLGRALPAALDSLAVGGRMVVMS 258

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+ FA R+     V   +    H    + +T+   + +  + A N R+ S 
Sbjct: 259 YHSLEDRMVKRAFAERAKSKTPVDLPVELPGHGPEIRLLTRGAELASDAETAANPRAASV 318

Query: 310 KLRAGMRTVE 319
           +LRA  R  E
Sbjct: 319 RLRAAERIKE 328


>gi|145595735|ref|YP_001160032.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440]
 gi|262826474|sp|A4X9S3|RSMH_SALTO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145305072|gb|ABP55654.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440]
          Length = 371

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 177/313 (56%), Gaps = 14/313 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
           G HVPVLLE+ + LL+PA  +       V +DAT G GG++ +         ++ LDRD 
Sbjct: 6   GAHVPVLLERCLELLSPALDRTGQTGRTVYVDATLGLGGHAEAILTAHPRTMLVGLDRDT 65

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGF 125
            A++  +  +  + ++  L  A + +L D    +    VDG++FDLGVSS+Q+D  DRGF
Sbjct: 66  EALAHARVRLARFADRVHLEHAVYDELPDVLDRIGHPVVDGILFDLGVSSLQLDAPDRGF 125

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM    G++A +VVN  +  +L R+L + GEEK ASRIA AIV+ R  AP
Sbjct: 126 AYAQDAPLDMRMDQSRGVTAEEVVNSYSHPELARVLRVYGEEKFASRIASAIVRERDRAP 185

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             ++  L+ L+++ +    +    HPA R+FQALRI VN E+  L   L +A   L   G
Sbjct: 186 ITSSAQLAELVRQAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLAIEG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+S+HSLEDRL K   A R      +   +        F+ +++   +P + +VA N
Sbjct: 246 RMVVLSYHSLEDRLTKVALADRVRSKGPIDLPVELPGTGPTFRLLSRGAELPGEAEVAVN 305

Query: 304 RRSRSAKLRAGMR 316
            R+ S +LRA  R
Sbjct: 306 PRAASVRLRAAER 318


>gi|308233784|ref|ZP_07664521.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae DSM 15829]
 gi|328943767|ref|ZP_08241232.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium
           vaginae DSM 15829]
 gi|327491736|gb|EGF23510.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium
           vaginae DSM 15829]
          Length = 319

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 172/310 (55%), Gaps = 12/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV+L +V   L+  PG V+ D T G  G++ +  +        + +D+D  A+    E
Sbjct: 7   HVPVMLTEVEQELSLKPGDVVCDCTLGGAGHTVALAQHVAPDGLSLGIDQDDAALKAASE 66

Query: 77  TMRDYKEQFSLF--QATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            M       +    +  FSQL + +    V   D  +FDLGVSS Q+D  +RGFS+ +  
Sbjct: 67  RMDRLAPCVTYKFLKGNFSQLDNLLVQAQVIGVDAFLFDLGVSSPQLDVAERGFSYHEDA 126

Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM     +   ++V+   N  DLTRIL   G+EK A+RIAH IV++R+ +P +TT 
Sbjct: 127 PLDMRMDPRNNTLTAAEVIQTYNEADLTRILRSYGDEKFAARIAHVIVEQRKLSPIRTTL 186

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  ++++ +  + + +  HPA ++FQALRI VN+E++ L  GL+ A + L  GG + ++
Sbjct: 187 ELVEVVKRAIPAAARRHGKHPARKTFQALRIEVNHELDVLETGLKQAIRWLNPGGRICII 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLED+LVK   +  +   +              V   +TKK +V T  +V  N R+R
Sbjct: 247 AYHSLEDKLVKHILSEYAQGCVCPADFPVCVCGRKPVLDILTKKPLVATPSEVECNPRAR 306

Query: 308 SAKLRAGMRT 317
           SA LRA  RT
Sbjct: 307 SALLRAARRT 316


>gi|126654823|ref|ZP_01726357.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110]
 gi|126623558|gb|EAZ94262.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110]
          Length = 304

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/301 (34%), Positives = 154/301 (51%), Gaps = 25/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVL ++VI  L   P    LDAT G GG+SR   +      V  +D D  A++  Q+ 
Sbjct: 16  HTPVLCQEVIEGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVTGIDLDGEAIATTQDN 75

Query: 78  MRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + +  + +F ++Q  F+           +G++ DLGVSS Q D  +RGFSF+    LDMR
Sbjct: 76  LSEIAENRFQVWQGNFADYPGETAQ--FNGILADLGVSSPQFDVPERGFSFRHEAVLDMR 133

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    ++A++++N  +   L  +    GEE+++  IA  IV+  Q     TT+   ++ 
Sbjct: 134 MNREQSLTAAEIINHWDQTSLADLFYQYGEERRSRPIARRIVQ--QRPFETTTELAEAIA 191

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +      +  RIHPATR FQALRI VN+E+  L + L  A   LK GG + ++SFHSLED
Sbjct: 192 KCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSLED 251

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK  F                     +   +TKK ++   E+   N RSRSAKLR   
Sbjct: 252 RRVKYSFRDSL-----------------LLDVVTKKPMIAQPEEREKNPRSRSAKLRFAQ 294

Query: 316 R 316
           R
Sbjct: 295 R 295


>gi|325519765|gb|EGC99070.1| 16S rRNA m(4)C1402 methyltranserfase [Burkholderia sp. TJI49]
          Length = 313

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLGPGGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IGDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHAV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I +    P + +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPGEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|332528826|ref|ZP_08404800.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC
           19624]
 gi|332041685|gb|EGI78037.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC
           19624]
          Length = 320

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 114/319 (35%), Positives = 171/319 (53%), Gaps = 19/319 (5%)

Query: 19  DHVPVLLEKVIALLNPAP----------GKVILDATFGAGGYSRSFCKMGS---NVIALD 65
            H  VLL + +  L   P              +DATFG GG+SR      +    + A D
Sbjct: 6   THTTVLLNEAVDALLNRPVELPDSLKTEDGHYVDATFGRGGHSRLLLSRLAPQARLTAFD 65

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP AV+  Q+ ++    +FS+    F+ L +        GV+ DLG+SS QID   RGF
Sbjct: 66  KDPQAVAEAQKIVQS-DARFSIRHQGFAHLNELPTQ-SCQGVLMDLGISSPQIDDPARGF 123

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM    G S ++ +  A V+++  ++   GEE+ A  IA AIV+RRQ+  
Sbjct: 124 SFRAEGPLDMRMDPTRGRSVAEWLMSAEVREIAEVIRDYGEERFAGPIAKAIVERRQAGR 183

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T    + +      ++    +PATR+FQA RIF+N E+EEL   L ++   L+ GG 
Sbjct: 184 PLATTAELAQLVAGAVKTREPGQNPATRTFQAFRIFINAELEELQAALEASLDVLQTGGR 243

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F A  + +V   R    +   P   +++ +  V P++ +VA N 
Sbjct: 244 LVVISFHSLEDRIVKQFIARHAREV-YDRRAPFAAPTPTRLRAVER--VRPSEAEVAANP 300

Query: 305 RSRSAKLRAGMRTVERSIE 323
           R+RSA +R  +RT     E
Sbjct: 301 RARSAIMRVAVRTDAEREE 319


>gi|294338811|emb|CAZ87145.1| S-adenosyl-dependent methyl transferase MraW [Thiomonas sp. 3As]
          Length = 317

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 165/317 (52%), Gaps = 12/317 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++ +      H  VLL + +  L   P  V LDATFG GG+SR   +       +IA+DR
Sbjct: 4   TTPMPSAETAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           DP A+    +    +  +F +  A FS+    + ++     DG++FDLGVSS Q+D  +R
Sbjct: 64  DPQAIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPER 120

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM   SG + ++ +  A+V ++  +L   G+E+ A +IA  IV RR +
Sbjct: 121 GFSFRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDA 180

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                     + +  +   S+     PATR+FQALRI VN E+ ++   L      L+ G
Sbjct: 181 GAPLARSGELAALVASAVKSREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDV 300
           G L V+SFHSLED L+K+F    +      R         A FQ   K+VV   P+  ++
Sbjct: 241 GRLAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAEI 300

Query: 301 AFNRRSRSAKLRAGMRT 317
           + N RSRSA LR   R 
Sbjct: 301 SGNARSRSAMLRVAQRV 317


>gi|317180415|dbj|BAJ58201.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F32]
          Length = 308

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                        G++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|325001098|ref|ZP_08122210.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudonocardia sp. P1]
          Length = 337

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
           H PVLLE+V ALL P     P  V +DAT G GG++ +       +  + LDRDP A+  
Sbjct: 16  HTPVLLERVSALLAPAIADRP-AVYVDATLGMGGHAAALLATHPQLTVVGLDRDPQALDL 74

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               +  Y ++     A + ++ + + +      D ++FDLGVSS+Q+D  +RGFS+ + 
Sbjct: 75  AGRRLTAYADRLRPVHAVYDRIGEALDETGVGPADAILFDLGVSSLQLDEVERGFSYSRD 134

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  + G +A+DV+N      L RIL   GEE+ A  IA+AIV+ R   PF  + 
Sbjct: 135 ADLDMRMDPTTGPTAADVLNTYTAPQLRRILREYGEERFAGPIANAIVRNRDKRPFTRSA 194

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  L+   V   S+    HPA R+FQALRI VN E++ L   L +A  AL  GG ++V+
Sbjct: 195 ELVELLYGVVPAASRRTGGHPAKRTFQALRIEVNAELDVLRDALPAAFDALAPGGRIVVL 254

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+ K+  A R+     +   +    H   F+ +T+     + +++  N R+  
Sbjct: 255 AYHSLEDRITKRALAERTRSRTPLDLPVELPGHEPEFRLLTRGAETASDDEIERNPRAAP 314

Query: 309 AKLRAGMRT 317
            +LRA  RT
Sbjct: 315 VRLRAAERT 323


>gi|88704092|ref|ZP_01101807.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71]
 gi|88701919|gb|EAQ99023.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71]
          Length = 308

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL + +  L  +P  + +D TFG GG+SR   +       + A D+      
Sbjct: 1   MAASHETVLLHEAVDALVGSPAGLYVDGTFGRGGHSREILRRLDNQGRLFACDK-DEEAE 59

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +    ++FS  + +F+ L  ++ ++    VDG++ DLGVSS Q+D  +RGFSFQ+
Sbjct: 60  RDAEELLAGDDRFSFARGSFAALPAFLEERGLGAVDGILLDLGVSSPQLDQAERGFSFQQ 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G SA+D +  A  +++  +L   GEE+ A RIA AIVK R   P   T
Sbjct: 120 DGPLDMRMDRSRGESAADWIAAAPEQEIIDVLREYGEERYARRIAAAIVKARSEKPLTRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+S++ +     + ++ HPATRSFQA+RI VN E+++LA+ L  A   L  GG L+V+
Sbjct: 180 AQLASIVSEAHPRWEKHK-HPATRSFQAIRIRVNRELDDLAELLSLALSVLAVGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK+     S      R +   +    V   +  K V  + ++VA N RSRS
Sbjct: 239 SFHSLEDRLVKRHLRDMSRGPQLPRDLPVRDVDVGVPMRLLGKAVRASDQEVAANPRSRS 298

Query: 309 AKLRAGMRTV 318
           A +R   +  
Sbjct: 299 AIMRCAEKIA 308


>gi|73542671|ref|YP_297191.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha JMP134]
 gi|88909215|sp|Q46WY6|RSMH_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72120084|gb|AAZ62347.1| methyltransferase [Ralstonia eutropha JMP134]
          Length = 332

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 118/327 (36%), Positives = 179/327 (54%), Gaps = 23/327 (7%)

Query: 9   MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63
           MS           H  VLL++ +  L   P  V +D TFG GG+SR+          ++A
Sbjct: 1   MSPTGSPATPALRHRTVLLDEAVEALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122
            D+DP A++           +FS+   +F+ + +       V GV+ DLG+SS QID   
Sbjct: 61  FDKDPAAIAEAGTI---QDARFSIEHESFAAMGERLAGRGHVAGVLLDLGISSPQIDEAA 117

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    GI+A++ + QA  +D+ R++   GEE+ A +IA AIV RR+
Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAEWLAQAEEQDIARVIRDYGEERFAVQIAKAIVARRR 177

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  TT DL++L+ K V  ++     PATR+FQALRI +N E+E+L +GL++A  
Sbjct: 178 EPGDGGPLATTADLAALVAKAV-KTREKGQDPATRTFQALRIHINQELEDLERGLKAAYD 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291
            L+ GG L+V+SFHSLEDR+VK+F A+ +         +       ++      + + + 
Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            V P  ++VA N R+RSA +R   +  
Sbjct: 296 -VKPGAQEVADNPRARSAVMRVAEKLA 321


>gi|257056486|ref|YP_003134318.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM
           43017]
 gi|256586358|gb|ACU97491.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM
           43017]
          Length = 327

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 176/311 (56%), Gaps = 10/311 (3%)

Query: 19  DHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
            H+PVL+++V+ L  PA      +++D T G GG++ +       +  I LDRDP A+  
Sbjct: 15  THLPVLVDRVLELFEPAVSDRDAILVDTTLGLGGHTEALLSAYPRLRVIGLDRDPEALER 74

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y  +       + +++D + +     V+GV+ DLGVSSMQ+D  DRGF++ ++
Sbjct: 75  SRRRLARYGSRVQFVHTVYDRIRDVLAELDVPAVEGVLMDLGVSSMQLDRDDRGFAYARN 134

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + GI+A+DV+N  +V +LTR+L   GEE+ A RIA A+V  R+  PF T++
Sbjct: 135 APLDMRMDPTTGITAADVLNTYSVDELTRVLRDYGEERFARRIAKAVVAERKREPFDTSE 194

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  L+  TV   S+    HPA R+FQALRI VN E++ L   + +A  +L  GG ++V 
Sbjct: 195 RLVRLLYATVPAGSRRTGGHPAKRTFQALRIEVNGELDILRAAVPAAIDSLAVGGRIVVE 254

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR+VK+     +         +    H    + +T+      +E++  N R+ S
Sbjct: 255 SYHSLEDRIVKQALTRAATSRTPEGLPVELPGHGPKLRLLTRGAEKADEEEIRRNPRAAS 314

Query: 309 AKLRAGMRTVE 319
            +LRA  +  E
Sbjct: 315 VRLRAAEKRGE 325


>gi|158522805|ref|YP_001530675.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3]
 gi|263446302|sp|A8ZXX1|RSMH_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158511631|gb|ABW68598.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3]
          Length = 312

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 172/312 (55%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  V+ ++ +ALLN   GK++ D T G GG++    +       +I +D+DP A++
Sbjct: 1   MSFRHTSVMPDQAVALLNCEKGKIVADCTLGGGGHAVRIAEQILPEGLLIGIDKDPAALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ +  + E+    +  F+   + +       VDGV+ DLG+S  QID   RGFSF+K
Sbjct: 61  HAKQALSVFGERVLYVRGNFADFSEILSSLDIPAVDGVLLDLGLSFYQIDGSGRGFSFRK 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A+D+VNQ+   DL RI    GEE+ ASRIA  IV+ R+SAP  T+
Sbjct: 121 DEPLDMRMDPDQSLTAADLVNQSAEADLVRIFREFGEERYASRIARRIVEARRSAPVTTS 180

Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L+ ++       + +  +I PATR F ALRI VN E+E L + L +    +K GG + 
Sbjct: 181 GQLARIVTDAYPAKERHTAKIDPATRVFMALRIAVNTELENLERFLDTVIDRIKPGGRIC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+SFHSLEDR+VK+         +    +   S +     + +T+K +VPT E+V  N  
Sbjct: 241 VLSFHSLEDRMVKRRMKLWEKACVCPPGLPVCSCSKQRECRIVTRKALVPTAEEVQANPM 300

Query: 306 SRSAKLRAGMRT 317
           +RS +LRA  + 
Sbjct: 301 ARSVRLRAAEKV 312


>gi|283850522|ref|ZP_06367810.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B]
 gi|283574093|gb|EFC22065.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B]
          Length = 325

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 11/307 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H+PVLL +V+  L   PG  ILDAT G GG+ +   +      +V+ LDRD  A+S 
Sbjct: 4   VPSHIPVLLREVVEFLAIRPGMRILDATAGLGGHIKGMLEAAGGEASVLGLDRDREALSE 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               +  Y ++  L +  +S+    + +   + VD  + D G+SS+Q+D  +RGF F   
Sbjct: 64  AGRRLEAYGDRVRLVRTRYSRFPAALAEAGWETVDAALLDAGMSSLQLDDPERGFGFLTD 123

Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           GPLDMRM     G SA  +VN A+   L  I+   GE+ QA RIA AIV  R++AP  TT
Sbjct: 124 GPLDMRMGVEDGGESAEGLVNLASFARLREIIREYGEDPQAGRIARAIVAERETAPITTT 183

Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + L+ ++            R HPATR+FQALR+ VN+E+ EL + LR+    +  GG + 
Sbjct: 184 RRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELGELEEFLRAIPGHIAPGGRVA 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+SFHSLEDRLVK+ F   +   +  R  ++    H A F+ +TKK V+  +E+VA N R
Sbjct: 244 VISFHSLEDRLVKRAFRLEATDCLCPREQIVCVCGHRARFRILTKKPVMAGEEEVAANSR 303

Query: 306 SRSAKLR 312
           +RSAKLR
Sbjct: 304 ARSAKLR 310


>gi|332297592|ref|YP_004439514.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           brennaborense DSM 12168]
 gi|332180695|gb|AEE16383.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           brennaborense DSM 12168]
          Length = 330

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 171/326 (52%), Gaps = 12/326 (3%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           H PVLL++ +  L+P          ++D+T G GG+S +F    S   +I LD DP   +
Sbjct: 5   HTPVLLQECLDALSPVGEPFEREPFMIDSTLGEGGHSEAFLTKYSDLRIIGLDADPNIQA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E +  +  + +     F+      P      D ++FDLG+S    +   RGFSF++ 
Sbjct: 65  RAKERLAPFGSRMNFHLGWFNDFYANYPGDMPKPDLILFDLGISLFHYEKSGRGFSFRQD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMR++   G SA D+VN  +   L  I  I GEE+ + RIA AI + R  +  +T  
Sbjct: 125 EPLDMRLNPDAGPSAGDLVNSLSSAQLADIFYIYGEERYSRRIAAAIERERAQSKIETAA 184

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ ++ ++V    ++  IHPAT++FQALRI VN E+  L + L +A   LK GG + V+
Sbjct: 185 ALADIVYRSVPAAYRHGAIHPATKTFQALRIAVNRELNRLPEALPAAFNVLKCGGKMGVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK +F + S   +      I         + +T+K + P+  +VA N  SR
Sbjct: 245 TFHSLEDRIVKNYFRNLSKVCICPPEQPICICGGVPHAELLTRKPLGPSGAEVAVNSPSR 304

Query: 308 SAKLRAGMRTVERSIEDDSFVHLPRL 333
           SAKLR   +  + S +  + +    +
Sbjct: 305 SAKLRVIRKLRDISAQSAALIAPENV 330


>gi|119026127|ref|YP_909972.1| S-adenosyl-methyltransferase MraW [Bifidobacterium adolescentis
           ATCC 15703]
 gi|263445943|sp|A1A2F7|RSMH_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118765711|dbj|BAF39890.1| S-adenosyl-methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 343

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           +      H PVLL   + L+ P    PG + +D T G  G+S +F K    + +I +DRD
Sbjct: 1   MTDVTTIHQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   + M      ++F+   A F      + D+    V+ V  DLG+SS+QID  +
Sbjct: 61  TEALALATKRMEMEGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +   +A  V+ + +  DL RI    GEE+ + +IA  IV+RR+
Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 TEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F              +        F+ +T+  +    E++A
Sbjct: 241 GGRLVVESYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 NNPRSASVRLRAVE 314


>gi|317484855|ref|ZP_07943747.1| MraW methylase [Bilophila wadsworthia 3_1_6]
 gi|316923901|gb|EFV45095.1| MraW methylase [Bilophila wadsworthia 3_1_6]
          Length = 355

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 113/325 (34%), Positives = 173/325 (53%), Gaps = 11/325 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           +      H+ VLL + +  L P  G   LD T G GG+S +  +       +  LDRD  
Sbjct: 1   MPSPESVHISVLLNEAVDALAPKAGGRYLDGTVGMGGHSFAIMERTGGEGFLCGLDRDTQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   +  +  + ++  L    +S+ +     +    VDG + D+GVSS+QID  +RGFS
Sbjct: 61  ALELARIRLAPFGDRVHLVHTRYSEFEAALDGIGWDAVDGALIDIGVSSLQIDSAERGFS 120

Query: 127 FQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           F   GPLDMRM         S +VN+A ++DL  I+   GE+ QA RIA AIV+ R   P
Sbjct: 121 FSSDGPLDMRMDRDSEELPVSRLVNRAKLEDLKDIIERYGEDPQAGRIARAIVEARVRKP 180

Query: 185 FQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +TT +L++L+++    +   +   HPATR+FQALR+ VN+EI EL + L +    LK G
Sbjct: 181 IETTGELAALVERAYPAAWRAKARNHPATRTFQALRMAVNDEIGELERFLDTILGRLKPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V+SFHSLEDR+VK    + +   +  +H+      H      +T K V P++ ++ 
Sbjct: 241 GRVAVISFHSLEDRVVKHRMKAWAQGCICPKHIPVCVCHHAPEALLVTPKPVCPSERELM 300

Query: 302 FNRRSRSAKLRAGMRTVERSIEDDS 326
            N R+ SAKLR   +    + + D 
Sbjct: 301 LNPRAGSAKLRVAEKLDPHARKADE 325


>gi|94498181|ref|ZP_01304742.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58]
 gi|94422311|gb|EAT07351.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 178/302 (58%), Gaps = 7/302 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           LL++V+  L  APG++ +D TFGAGGYS +  + G+ V A DRDP A+  G+     +  
Sbjct: 2   LLDEVLDALAIAPGEIHVDGTFGAGGYSSAMAQAGARVFAFDRDPDAIREGRAVADAHGI 61

Query: 84  QFSL-FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
                  +  +QL        V GV  D+GVSSMQ+D  +RGFSFQ  GPLDM MS  G+
Sbjct: 62  TLIPGEFSRMAQLLTERDVDRVAGVTLDIGVSSMQLDRPERGFSFQSDGPLDMTMSQGGM 121

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA+D +N A  +D+  ++   GEE ++ R+A AIV  R   P + T  L+++++K + + 
Sbjct: 122 SAADFLNSAPEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTAQLAAVVRKALGYK 178

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
            +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG L +V+FHSLEDR+VK+F 
Sbjct: 179 PHDKKDPATRTFQAIRIHVNRELEELERGLEAAEALLEEGGRLAIVTFHSLEDRIVKQFL 238

Query: 263 ASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            +RSG        +P         F     K V     ++A N R+RSA LR+ +RT   
Sbjct: 239 RNRSGGEGGGSRHLPERTAGPQPTFARPA-KAVRAGDAELARNPRARSATLRSAVRTAAP 297

Query: 321 SI 322
           S 
Sbjct: 298 SR 299


>gi|188997242|ref|YP_001931493.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|262825725|sp|B2V5J5|RSMH_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188932309|gb|ACD66939.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 293

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 180/308 (58%), Gaps = 22/308 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           + +H  VL ++V+       G+V +DAT G GG+S    K      +I LD+D +A+   
Sbjct: 1   MVEHYSVLHKEVLEFSKLIEGEVFVDATVGGGGHSYLILKQNLNLKLIGLDKDDYALKVA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +++++++ +L +++F  L   +     K ++G++FD GVS+ Q+   +RGFSFQ+  
Sbjct: 61  KERLKEFEDRITLVKSSFKDLDKVLQSLQIKEINGILFDFGVSTFQLKL-ERGFSFQREE 119

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   +A D+VN    +DL  I+   GEEK AS+IA +IV+ R+    +TT++
Sbjct: 120 FLDMRMDTTQKLTAYDIVNYYREQDLYNIIKTYGEEKFASKIAKSIVEYRKKKKIETTKE 179

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++ +    + ++ +IHPATR+FQA+RI VNNE++++ +GL  A   L   G+++ +S
Sbjct: 180 LADIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGIIMAIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  F                       + +TKK + P+ E++  N  SRSA
Sbjct: 240 FHSLEDRIVKNMFKKY--------------KELKFLEILTKKPITPSDEEIKENPASRSA 285

Query: 310 KLRAGMRT 317
           KLR G R 
Sbjct: 286 KLRVGRRI 293


>gi|220909120|ref|YP_002484431.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425]
 gi|263446188|sp|B8HTI9|RSMH_CYAP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219865731|gb|ACL46070.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425]
          Length = 294

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 167/303 (55%), Gaps = 26/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PVL + VI  LN  PG   LDAT G GG+SR   +      V ALDRD  A+   +  
Sbjct: 12  HIPVLSQAVIQGLNLRPGGHYLDATVGGGGHSRLILEAAPESQVTALDRDQQALQAARSA 71

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           ++ Y E+   +Q+ F+  +        DG++ DLGVSS Q+D   RGFSF+   PLDMRM
Sbjct: 72  LQPYGERVQFYQSNFADYES--GSLRFDGILADLGVSSAQLDQPQRGFSFRADAPLDMRM 129

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                ++A+++VN A+ ++L  I    GEE+ A RIA    +  Q  P  TT  L+SL+ 
Sbjct: 130 DQRQSLTAAELVNTASAEELADIFYYYGEERFARRIA---RRIVQHRPLYTTAQLASLVS 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + +  S++  IHPATR FQALRI VN E+E L Q L  +   L  GG L V+SFHSLEDR
Sbjct: 187 RAL-PSRSQSIHPATRVFQALRIAVNRELESLEQFLERSPHWLVTGGRLAVISFHSLEDR 245

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VK      S                 + Q +TKK ++P+ E+++ N R+RSAKLR   R
Sbjct: 246 RVKHGLRDHS-----------------LLQVLTKKPILPSSEEISANPRARSAKLRLAQR 288

Query: 317 TVE 319
              
Sbjct: 289 LDA 291


>gi|320106390|ref|YP_004181980.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4]
 gi|319924911|gb|ADV81986.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 159/313 (50%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74
             HVPVL ++V+  LN   G    DAT G GG+S            +I  DRDP A++  
Sbjct: 4   PQHVPVLYDEVLNFLNVRAGGTYADATLGLGGHSSGIARLLGAKGTLICFDRDPEAMTKA 63

Query: 75  QET-------MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +         + D           FS+ +D +    +DG++ D GVSS+Q+D   RGFSF
Sbjct: 64  KARFEALAVELGDTMPTVRFEPRAFSEAKDVIKPGSLDGLLADFGVSSLQLDEAHRGFSF 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  GPLDMRM    G +A  VVNQA+ ++L  ++   G   +  R         ++ P +
Sbjct: 124 RFEGPLDMRMDTRSGETAEQVVNQADEEELANLIYEFG---EERRSRRIARAIVRARPIR 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ +I       K+++IHPATR+FQALRI VN+E+ E+   L SA   LK GG L 
Sbjct: 181 TTAELAKVISVAAPSMKSDKIHPATRTFQALRIRVNDELGEIRTLLESAPSLLKVGGRLA 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDRLVK      +   +                 I KK +   ++++  N RS
Sbjct: 241 VISFHSLEDRLVKDATRDGARDGIWN--------------LIEKKPITAGEDEIQRNPRS 286

Query: 307 RSAKLRAGMRTVE 319
           RSAKLR   R  +
Sbjct: 287 RSAKLRVAERIAD 299


>gi|159038986|ref|YP_001538239.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205]
 gi|262826354|sp|A8LX88|RSMH_SALAI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157917821|gb|ABV99248.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205]
          Length = 372

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 120/319 (37%), Positives = 178/319 (55%), Gaps = 11/319 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VI 62
           M   +    G HVPVLLE+ + LL PA G+    V +DAT G GG++ +         ++
Sbjct: 1   MGVDMGELRGAHVPVLLERCLELLAPALGRAGRTVYVDATLGLGGHAEAVLATHPQTMLV 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQID 119
            LDRD  A++  +  +  + ++  L  A + +L D +       VDG++FDLGVSS+Q+D
Sbjct: 61  GLDRDTEALAHARVRLARFADRVHLEHAVYDELPDVLDRLGHPVVDGILFDLGVSSLQLD 120

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             DRGF++ +  PLDMRM    G++A +VVN     DL R+L + GEEK A RIA AIV+
Sbjct: 121 APDRGFAYAQDAPLDMRMDQTRGLTAEEVVNTYPHPDLARVLRVYGEEKFAPRIASAIVR 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  P  ++  L+ L+++T+    +    HPA R+FQALRI VN E+  L   L +A  
Sbjct: 181 ERERDPITSSARLAELVRQTIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALD 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L   G L+V+S+HSLEDRL K   A R      V   +        F+ +++   +P +
Sbjct: 241 RLTIEGRLVVLSYHSLEDRLTKVALADRVRSKGPVDLPVELPGTGPTFRLLSRGAELPGE 300

Query: 298 EDVAFNRRSRSAKLRAGMR 316
            +VA N R+ S +LRA  R
Sbjct: 301 AEVAMNPRAASVRLRAAER 319


>gi|161344767|ref|NP_440820.2| S-adenosyl-methyltransferase MraW [Synechocystis sp. PCC 6803]
          Length = 297

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 162/306 (52%), Gaps = 29/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           HV VL   ++  L P PG   LDAT GAGG+S    K+G    +  +DRD  A++   E 
Sbjct: 13  HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIPLALTMIDRDVQAIAAAMER 72

Query: 78  MRD-----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++           + +Q  F+     +     DG++ DLGVSS Q+D GDRGFSF+ + P
Sbjct: 73  LQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLGVSSPQLDQGDRGFSFRHTAP 130

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S   +A++++N  + KDL RI    GEE+ + RIA  IV+  Q     TT   
Sbjct: 131 LDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIARQIVE--QRPFQTTTDLA 188

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ +      ++ RIHPATR+FQ LRI VN+E+  L + +  A   LK+GG   ++SFH
Sbjct: 189 EAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKFIAQAPHWLKSGGKFGIISFH 248

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F                       + +TKK ++  +E+   N R+RSAKL
Sbjct: 249 SLEDRIVKHRFRETEN-----------------LRVLTKKPIIAGEEEQRQNPRARSAKL 291

Query: 312 RAGMRT 317
           R   + 
Sbjct: 292 RWAEKI 297


>gi|328948458|ref|YP_004365795.1| ribosomal RNA small subunit methyltransferase H [Treponema
           succinifaciens DSM 2489]
 gi|328448782|gb|AEB14498.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           succinifaciens DSM 2489]
          Length = 340

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 170/311 (54%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           H PVLL + +  L+P          ++D+T G GG+S +F K      ++ LD D    +
Sbjct: 18  HTPVLLNECLKFLSPIGEPFEKDAFMIDSTLGEGGHSFNFLKKFPTLKILGLDADSVIQA 77

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +E + ++ E+   +   F+    +Y  ++  D ++FDLG+S    +   RGFSF+   
Sbjct: 78  RAKERLSEFGERMKFYNGWFNDFYCNYSEERKPDLILFDLGISVFHYEKSGRGFSFRHDE 137

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMR++  +  SA+D+VN+    +L  ++ +  +EK + RIA AIV  R+S    +T+ 
Sbjct: 138 ELDMRLNADTKESATDIVNEMPEDELANMIYLYSDEKYSRRIASAIVSARKSQKIVSTKA 197

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I   V    K   IHPATR+FQALRI VN+E++ L + + +A   L  GG + V++
Sbjct: 198 LADIIFNAVPSKYKYGNIHPATRTFQALRILVNSELKRLPEAIHAAFNVLAPGGKIGVIT 257

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK +F +   + +  R             + +T+K V P++E++  N  SRS
Sbjct: 258 FHSLEDRIVKNYFRNLGKQCVCPREFPECVCGGTPCAEILTRKPVEPSEEEIKANSPSRS 317

Query: 309 AKLRAGMRTVE 319
           AKLR   +  +
Sbjct: 318 AKLRVVRKLRD 328


>gi|239813918|ref|YP_002942828.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110]
 gi|263504487|sp|C5CNE6|RSMH_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239800495|gb|ACS17562.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110]
          Length = 307

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 164/308 (53%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            H  VLL + +  L   + A     +DATFG GG++R+          +IA D+D  AV+
Sbjct: 6   THTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDAEAVA 65

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +   D  V GV+ DLGVSS QID   RGFSF+  GP
Sbjct: 66  EAARI---SDARFSIRHQGFRSLGELP-DASVAGVLMDLGVSSPQIDNPVRGFSFRFDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S +D +  A ++ +  ++   GEE+ A +IA AIV RRQ     +T   
Sbjct: 122 LDMRMDTTRGESVADWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGAISTTSE 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQA RIF+N E+EEL Q L ++   L+ GG L V+SFH
Sbjct: 182 LAELVAGTVKTREPGQNPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLAVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +       +++ +  + P+  +V  N RSRSA L
Sbjct: 242 SLEDRIVKQFIARHSKEV-YDRRAPFAAPKAMKLRALER--IKPSDAEVHGNPRSRSAIL 298

Query: 312 RAGMRTVE 319
           R   RT E
Sbjct: 299 RVAERTQE 306


>gi|121595969|ref|YP_987865.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42]
 gi|263433389|sp|A1WC14|RSMH_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120608049|gb|ABM43789.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42]
          Length = 308

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 162/309 (52%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL++ +  L     AP    +D TFG GG+SR   +       ++A D+D  A+  
Sbjct: 7   HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                     +FS+    FS L +      V GV+ DLGVSS QID   RGFSF+  GPL
Sbjct: 67  AARI---TDARFSIRHQGFSHLGELPAA-SVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G S ++ +  A    +  ++   GEE+ A  IA AIV RR       +    
Sbjct: 123 DMRMDTTRGQSVAEWLADAETAQIAEVIRDYGEERFAGPIAKAIVARRTERGPIASTAEL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I      ++    +PATR+FQALRIF+N E+EEL Q L  +   L+ GG L+V+SFHS
Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALEGSLHVLRPGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F A  S +V   R    +   P   +++ +  + P+ ++VA N R+RSA +R
Sbjct: 243 LEDRIVKQFIAQHSKEV-YDRRAPFAPPQPMRLRALER--IKPSTDEVAANARARSAVMR 299

Query: 313 AGMRTVERS 321
              RT   +
Sbjct: 300 VAERTEVPA 308


>gi|88801293|ref|ZP_01116821.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P]
 gi|88781951|gb|EAR13128.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P]
          Length = 299

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 13/303 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL++ +  L      + +D TFG GG+S+           +   D+DP A+  
Sbjct: 1   MKYHSPVLLKESVDALAIKENGIYVDVTFGGGGHSKEILSRLGDSGRLFGFDQDPDALEN 60

Query: 74  GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + D +         + S+   +   K VDG++ DLGVSS Q D  DRGFS +  G 
Sbjct: 61  ---IIEDARFTLIPENFRYISRFLRFHGVKKVDGILADLGVSSHQFDEADRGFSTRFDGD 117

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +V+   + + L  IL + GE + +  IA  IV++RQ    +T+  L
Sbjct: 118 LDMRMNQKSKVSAKEVIGTYSEEKLAEILFLYGELRNSRNIAKTIVEKRQEEKIETSFQL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +QK +  +  ++I    + FQA+RI VN E+E L + L      LK  G L V+S+H
Sbjct: 178 KEALQKYLPNAVEHKI--LAQIFQAVRIEVNEELEVLKEFLLQTPNLLKEKGRLSVISYH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F  +        +    +   P        K++VP  ++V  N R+RSAKL
Sbjct: 236 SLEDRLVKRFIRTGLFIGEPEKDFFGNIEVPMQ---KVGKLIVPDAKEVKVNNRARSAKL 292

Query: 312 RAG 314
           R  
Sbjct: 293 RIA 295


>gi|296134857|ref|YP_003642099.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12]
 gi|295794979|gb|ADG29769.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12]
          Length = 311

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 163/314 (51%), Gaps = 12/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL + +  L   P  V LDATFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MPSAESAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           A+    +    +  +F +  A FS+    + ++     DG++FDLGVSS Q+D  +RGFS
Sbjct: 61  AIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFS 117

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  GPLDMRM   SG + ++ +  A+V ++  +L   G+E+ A +IA  IV RR +   
Sbjct: 118 FRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAP 177

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
                  + +  +   S+     PATR+FQALRI VN E+ ++   L      L+ GG L
Sbjct: 178 LARSGELAALVASAVKSREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGRL 237

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDVAFN 303
            V+SFHSLED L+K+F    +      R         A FQ   K+VV   P+  +++ N
Sbjct: 238 AVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAEISGN 297

Query: 304 RRSRSAKLRAGMRT 317
            RSRSA LR   R 
Sbjct: 298 ARSRSAMLRVAQRV 311


>gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
 gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
          Length = 324

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 130/292 (44%), Positives = 175/292 (59%), Gaps = 7/292 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++VIA L P  G + +D TFGAGGYSR+  +     VI +DRDP A+  G+   
Sbjct: 7   HIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIERGRVLA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +++  +  + +  F  +   +       VDGV  D+GVSS QID  +RGFSF+  GPLDM
Sbjct: 67  QEFPGRLDVIEGRFGDMDQLLARHGVDRVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVVN A+  +L  IL  LGEE+ A R+A AIV  R+ AP + T  L+ +I
Sbjct: 127 RMGRDGPTAADVVNGADEGELADILYHLGEERMARRVARAIVAARREAPIERTARLADII 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   K + I PATRSFQALRI VN+E+ EL +GL +AE  L  GG L VVSFHSLED
Sbjct: 187 RSVVPKGKGDGIDPATRSFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304
           R VK F   RS    +     P     AH   F+ +++K V P++ +   N 
Sbjct: 247 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPSFRLLSRKPVDPSEAEARNNP 298


>gi|171742509|ref|ZP_02918316.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC
           27678]
 gi|283456404|ref|YP_003360968.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium
           Bd1]
 gi|306822422|ref|ZP_07455800.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC
           27679]
 gi|309802480|ref|ZP_07696586.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278123|gb|EDT45784.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC
           27678]
 gi|283103038|gb|ADB10144.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium
           Bd1]
 gi|304553967|gb|EFM41876.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC
           27679]
 gi|308220880|gb|EFO77186.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium
           JCVIHMP022]
          Length = 343

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 162/314 (51%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H PVLL + + L+ P    PG V +D T G  G+S +F K      +I +DRD
Sbjct: 1   MTDVTTIHQPVLLRECVDLVAPALAKPGAVAVDCTLGLAGHSTAFLKASPEARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122
             A++     M      E+F    A F +    + D+ +D V     DLG+SS+QID  +
Sbjct: 61  VEALALATRRMEQEGLAERFIPVHAAFDEFAHVLEDRNIDVVDAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +   +A  V+++ +  DL RI    GEE+ + +IA  IV+RR+
Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           + P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 TEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F A      +     +        F+ +T+  +   + ++A
Sbjct: 241 GGRLVVESYHSLEDKTVKTFMAQGLKADVPADMPVIPPDMQPFFKELTRGAIKADETEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 MNPRSASVRLRAVE 314


>gi|284929250|ref|YP_003421772.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A]
 gi|284809694|gb|ADB95391.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A]
          Length = 298

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 158/303 (52%), Gaps = 25/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ-E 76
           H+PVL +++I  L   PG + LDAT G GG+S        N  VI +D D  A+   +  
Sbjct: 16  HIPVLSQELIEGLAIKPGGIYLDATLGRGGHSNLILSTFPNVQVIGIDLDDDAILNTKTN 75

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                K++F  +   F      + +   DG++ DLGVSS Q+D  +RGFSF+    LDMR
Sbjct: 76  MSSSMKQRFQTWAGNFKDYPGKIEE--FDGIIADLGVSSPQLDNPERGFSFRHEASLDMR 133

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    ++A +++N  +   L  I    GEEK++  IA  +V+      F TT   S++ 
Sbjct: 134 MNREQSLTAEEIINHWSEITLANIFYQYGEEKRSRSIARYLVE--NRPFFTTTDLASAIS 191

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +      +  RIHPATR FQALRI VN+E+  L + L+ +   LK  G + ++SFHSLED
Sbjct: 192 KVFPPKYRYGRIHPATRVFQALRIIVNDELTSLEKFLQQSPSWLKPQGNIGIISFHSLED 251

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK  F   S                 +   ITKK ++P QE+   NRRSRSAKLR   
Sbjct: 252 RIVKHTFRDSS-----------------LLDVITKKPIIPKQEEKYNNRRSRSAKLRFAK 294

Query: 316 RTV 318
           R  
Sbjct: 295 RKN 297


>gi|167912660|ref|ZP_02499751.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 112]
          Length = 313

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRLDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 E      A      D      V GV+ DLGVSS Q+D   RGFSF+ +GPLDMR
Sbjct: 67  IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+RSA
Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 304 VMRIAERVA 312


>gi|332673556|gb|AEE70373.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 83]
          Length = 308

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                         ++A  ++N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGDLNAQKIINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|260220007|emb|CBA27114.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 311

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 164/311 (52%), Gaps = 21/311 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKV---------ILDATFGAGGYSRSFCKMG---SNVIALDR 66
            H  VLL + +  L  + G            +DATFG GG+SRS          +IA DR
Sbjct: 6   THTTVLLNEAVDAL-FSDGGTPFDAASLATYVDATFGRGGHSRSILSRLDASGRLIAFDR 64

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP AV+           +FS+    FS L   +P   V GV+ DLGVSS QID  +RGFS
Sbjct: 65  DPEAVAQAALI---TDPRFSIRHEGFSNLG-VLPSGSVGGVLMDLGVSSPQIDSPERGFS 120

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  GPLDMRM    G S +  +  A +  +  ++   GEE+ A  IA AIV RRQ    
Sbjct: 121 FRFEGPLDMRMDTTRGESVAQWLETAEINQIAEVIREYGEERFAGSIAKAIVARRQERGP 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +T    + +      ++    +PATR+FQA RIF+N E+EEL Q L ++ + L+ GG L
Sbjct: 181 ISTTSELAQLVADTVKTREPGQNPATRTFQAFRIFINAELEELQQALDASLEVLQPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+SFHSLEDR+VK+F A  S +    R    +       +++ +  + P+ E+VA N R
Sbjct: 241 AVISFHSLEDRIVKQFIAKHSKE-EYDRRAPFAAPKVMKLKALGR--IKPSAEEVAANPR 297

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 298 SRSAILRVAQR 308


>gi|291229752|ref|XP_002734836.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 377

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 125/336 (37%), Positives = 177/336 (52%), Gaps = 30/336 (8%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
            +H     H+PV+L+ V+   +P   +V +D TFGAGG+S    K   N+   ALDRDP 
Sbjct: 41  TVHSNEQLHIPVMLDDVLDFFSPEKNQVYIDMTFGAGGHSSEILKCAENITMYALDRDPL 100

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRG 124
           A+   ++    +  +    +  FS++   +         VDGV+ D G SSMQ+D  +RG
Sbjct: 101 ALDIAKQLSGLHGNRIIPLEGKFSEITRLLDQHDVGLNSVDGVLLDAGCSSMQMDTAERG 160

Query: 125 FSFQKSGPLDMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           FS  K GPLDMRM         +A+DVVN  +  DL +I+   GEEK A +IA +IV+ R
Sbjct: 161 FSISKDGPLDMRMDSDRDPKQPTAADVVNALSEADLAKIIRTYGEEKHARKIARSIVEYR 220

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRI---------HPATRSFQALRIFVNNEIEELAQG 231
            +    TT    + +    +  +  +          H AT++FQALRIFVNNE+ EL  G
Sbjct: 221 TTWQPITTTKEFAYVVSCAFSHREAKKQKDKLRRPVHTATKTFQALRIFVNNELNELVMG 280

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAV--------RHMIPSNAH 281
           L   EK LK GG L V++FHSLEDR+VK+F      S K            R     +  
Sbjct: 281 LEQVEKILKPGGKLAVITFHSLEDRIVKRFLRGIDYSEKYSMSIGEKMRENRTRDGDDNR 340

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           P  ++ I KKV+ P +ED+  N R+RSAKLR  ++ 
Sbjct: 341 PQRWKEINKKVLEPLEEDIIDNPRARSAKLRTAVKI 376


>gi|221202506|ref|ZP_03575536.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M]
 gi|221208172|ref|ZP_03581177.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2]
 gi|221172075|gb|EEE04517.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2]
 gi|221177601|gb|EEE10018.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M]
          Length = 313

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 164/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  MADARFSIVHDSFASMRGALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T +L
Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I +    P++ +V  N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVVANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|107021630|ref|YP_619957.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia AU
           1054]
 gi|123245314|sp|Q1BZH1|RSMH_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|105891819|gb|ABF74984.1| methyltransferase [Burkholderia cenocepacia AU 1054]
          Length = 313

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVCVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                        A+          + V GV+ DLGVSS Q+D   RGFSF+  GPLDMR
Sbjct: 67  IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191
           M    G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V  ++     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+SFH
Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+RSA
Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303

Query: 310 KLRAGMRT 317
            +R   R 
Sbjct: 304 VMRIAERV 311


>gi|223040364|ref|ZP_03610639.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267]
 gi|222878322|gb|EEF13428.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267]
          Length = 310

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 158/303 (52%), Gaps = 6/303 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               HVPVLL++V+         VI+D T G GG+S +  +     N+IA D+D  A++ 
Sbjct: 1   MNSPHVPVLLDEVLRAFEGIKSGVIVDCTLGYGGHSGAILEQNQNVNLIACDQDEEAINF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E ++ + ++  +F++ FS++ + +    + G++ D+GVSS+Q+D  +RGF  +     
Sbjct: 61  SSERLKKFGQRAQIFKSKFSEILNKIEQTQIRGILADIGVSSLQLDKNERGFGLKSENLD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
               + +  SA DVVN  + ++L RI    GE    ++ A  IV+ RQ+   ++ + L+ 
Sbjct: 121 MRMDAQAKFSAYDVVNSYSARELERIFEGYGELPNPAKFAAKIVEARQNGEIKSAERLAQ 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I   +       +  AT +FQA+RI VNNE+ EL   L+  E +     ++ ++ FHSL
Sbjct: 181 IIG--LKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQGIEDSQIDECVVAIIGFHSL 238

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK  F   +   +     +        A+ + ++KK + P+  +V  N RS  AK+
Sbjct: 239 EDRIVKNKFKQWAQSCICPPQALKCTCGGDNALGKIVSKKAITPSAAEVKANPRSSCAKM 298

Query: 312 RAG 314
           R  
Sbjct: 299 RIF 301


>gi|326693783|ref|ZP_08230788.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc argentinum KCTC
           3773]
          Length = 313

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           +  +HV VLL + +ALL+  P  + +DAT G GG++    K      + + D+D  A+  
Sbjct: 2   SEFEHVTVLLHEAVALLDIKPDGLYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +   D     +  L    F  L+  + ++    VDG+V+DLGVSS+Q D G RGFS+ 
Sbjct: 62  NTKQYADEIAAGKLVLIHQNFRTLKSALAERGVTAVDGIVYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM      +A  +VN     DL RIL   GE++   +IA  I + R++ P  T
Sbjct: 122 YDAELDMRMDQRQTLTAKTIVNDWPFNDLLRILSRYGEDRFPKQIARKIEQHRENGPINT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  A   L   G + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIDLLAPDGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305
           V++F SLEDRLVK+ F  ++        +        A +  +T+K ++P Q+++A N R
Sbjct: 242 VITFQSLEDRLVKQMFREKTTAPELPAGLPVLPGQFEADYTLLTRKPILPGQDEMADNHR 301

Query: 306 SRSAKLRAGMR 316
           S SAKLR   R
Sbjct: 302 SESAKLRGIAR 312


>gi|238916664|ref|YP_002930181.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750]
 gi|263447037|sp|C4Z530|RSMH_EUBE2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238872024|gb|ACR71734.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750]
          Length = 315

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 164/311 (52%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLLE+ I  LN  P  + +D T G  G+S    K    G  +I +D+D  A++
Sbjct: 5   MEFKHKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSYQIAKRLTGGGRLIGIDQDADAIA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +++++E+ ++ +  +  +   + +     VDG++ D+GVSS Q+D   RGF++  
Sbjct: 65  AATERLKEFEERVTIVRNNYCNMDKVLDELGIDKVDGILLDIGVSSYQLDTASRGFTYNV 124

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     ++A D+VN  +  +L RI+   GE++ A  IA  IV  R+  P +TT
Sbjct: 125 DTALDMRMDQRQEMTAKDLVNTYSEMELFRIIRDYGEDRFAKNIAKHIVAARKEKPIETT 184

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I+ ++    +    HP+ R++QA+RI +N E++ L   +      L   G L +
Sbjct: 185 FELNEIIKASIPAKVRATGGHPSKRTYQAIRIELNRELDVLENSIDMMIDRLNPQGRLCI 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F +                   +  + IT+K +VP  E++  N+RS
Sbjct: 245 ITFHSLEDRIVKARFRNNENPCTCPPDFPVCVCGKKSKGKVITRKPIVPGDEELNENQRS 304

Query: 307 RSAKLRAGMRT 317
           +S+KLR   R 
Sbjct: 305 KSSKLRVFERI 315


>gi|297181413|gb|ADI17602.1| predicted s-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [uncultured delta
           proteobacterium HF0130_19C20]
          Length = 314

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
              H+ VL ++V+    P+P + ILD T G GG+S    +      +  +DRD  AV   
Sbjct: 4   HFRHISVLQKEVVDFAPPSP-QTILDCTLGGGGHSYKLLEKYPKASLYGIDRDSIAVKAA 62

Query: 75  QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + ++++++Q  L  A+FS+L    D   +   D ++ D+GVSS QI C +RGFSF   G
Sbjct: 63  DQRLQNFRKQTCLIHASFSELPAMIDKWGNPIFDYIIADIGVSSEQISCPERGFSFLNEG 122

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM      ++A ++VN AN  +L  IL   GEE+ A RI   I+  R+   F+TT 
Sbjct: 123 PLDMRMDPERQHLTAENIVNNANEHELVNILRNFGEERFARRIVSTILVERRKKKFRTTL 182

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ L++  +    +    +PAT++FQALRI VNNE+ EL   L +  K LK  G + V+
Sbjct: 183 ELAELVKNVIPNKMRKRGFNPATKTFQALRIAVNNELLELTTLLENVPKFLKNSGRMAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+ F       +    +         + + +T++ V  ++E++A N RSR
Sbjct: 243 SFHSLEDRIVKQKFRKWENPCVCPTDLPYCVCGGIPLGKVLTRRQVKASKEEIAKNPRSR 302

Query: 308 SAKLRAGMRT 317
           SA LR   + 
Sbjct: 303 SAHLRVFTKI 312


>gi|15616841|ref|NP_240054.1| hypothetical protein BU224 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681595|ref|YP_002467981.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471280|ref|ZP_05635279.1| hypothetical protein BaphL_01110 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11387278|sp|P57319|RSMH_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|254813207|sp|B8D922|RSMH_BUCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25302081|pir||D84956 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10038905|dbj|BAB12940.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624438|gb|ACL30593.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 123/316 (38%), Positives = 189/316 (59%), Gaps = 20/316 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           ++H I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP 
Sbjct: 1   MNH-IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQNGRLYSIDRDPI 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125
           A S G E       +F +    FS+L D+  ++ +    +G++FDLGVSS+QID   RGF
Sbjct: 60  AFSIGSEIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGF 116

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM    GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q   
Sbjct: 117 SFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKK 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG 
Sbjct: 177 ITSTLELANIIKKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299
           + ++SFHSLEDRLVKKF    S K +    M  +            + I +  ++PTQ +
Sbjct: 236 ISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNE 293

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N R+RS+ LR   
Sbjct: 294 INNNPRARSSVLRIAE 309


>gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
 gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
          Length = 338

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 138/287 (48%), Positives = 190/287 (66%), Gaps = 3/287 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L PA G +I+D TFGAGGY+++    G++V+A+DRDP A++ G++ 
Sbjct: 16  ARHIPVLLGEVLEALAPAEGDIIIDGTFGAGGYTKAILATGASVVAIDRDPDAIAAGRDL 75

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
                 +  L QA FS L +    + VDGVV D+GVSSMQ+D  +RGFSF+  GPLDMRM
Sbjct: 76  EAQSGGRLRLVQAPFSTLDE--HAESVDGVVLDIGVSSMQLDQAERGFSFRNDGPLDMRM 133

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           + +G+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L+  I+ 
Sbjct: 134 AQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIET 193

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +  +  ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+
Sbjct: 194 HIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRI 253

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           VK+F A R+      RH+  + A  A F+      V P   ++A N 
Sbjct: 254 VKRFIADRADTASGSRHLPEAQARSATFRKDGGG-VTPGDAEIAANP 299


>gi|119478644|ref|ZP_01618547.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119448421|gb|EAW29672.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 291

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 107/291 (36%), Positives = 165/291 (56%), Gaps = 9/291 (3%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
            P  V +D TFG GG+SR          +++ +D+DP A++ G E +    E+F +   +
Sbjct: 3   RPAGVYVDGTFGRGGHSRRILTKLDAMGHLLGIDKDPQAIATGNE-LAVIDERFEIVHGS 61

Query: 92  FSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDV 147
           F++   L      +G+DGV+ DLGVSS Q+D   RGFSF + GPLDMRM+   G+SA++ 
Sbjct: 62  FAETLELIRLRWPQGIDGVLLDLGVSSPQLDQSQRGFSFLRDGPLDMRMNTDAGMSAAEW 121

Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207
           V  A   ++ R+L   GEE+ A R+A AI+K R ++P +TT  L+ ++ +     +  + 
Sbjct: 122 VATATESEIARVLKEFGEERFAKRMARAIIKERMASPIETTLHLAKVVAEAHPAWERGK- 180

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPAT++FQA+RI++NNE+ +L Q L  A   L  GG L+V+SFHSLEDR+VK+F      
Sbjct: 181 HPATKAFQAIRIYINNELGDLRQFLDQALDVLNIGGRLVVISFHSLEDRMVKRFIRHHVR 240

Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                 ++  +            K V  + E++  N RSRSA +R   +  
Sbjct: 241 GDQLPANLPVTVDQLNRRLRQVGKAVKASAEEIDGNSRSRSAIMRVAEKIA 291


>gi|256788289|ref|ZP_05526720.1| hypothetical protein SlivT_27704 [Streptomyces lividans TK24]
          Length = 309

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 179/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A+    E +
Sbjct: 1   MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  + +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   +G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 121 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A +++  GG + V+S+HSL
Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AERIRE 306


>gi|21220572|ref|NP_626351.1| S-adenosyl-methyltransferase MraW [Streptomyces coelicolor A3(2)]
 gi|289772183|ref|ZP_06531561.1| methylase MraW [Streptomyces lividans TK24]
 gi|20139275|sp|Q9S2W4|RSMH_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|5689964|emb|CAB52001.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289702382|gb|EFD69811.1| methylase MraW [Streptomyces lividans TK24]
          Length = 310

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 179/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A+    E +
Sbjct: 2   MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  + +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 62  APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   +G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 122 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 181

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A +++  GG + V+S+HSL
Sbjct: 182 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 242 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301

Query: 314 GMRTVE 319
             R  E
Sbjct: 302 AERIRE 307


>gi|194337867|ref|YP_002019661.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|262824772|sp|B4SHF1|RSMH_PELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194310344|gb|ACF45044.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 332

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/318 (32%), Positives = 163/318 (51%), Gaps = 19/318 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVL+ +V+A L   P  + +D T G GG+S +  +         GS +I +D+D  A+
Sbjct: 9   HEPVLVNEVVAFLVRKP-GIYVDGTLGGGGHSSAMLRALFDAGFLAGSLLIGIDQDDAAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
               ET++++     L +  F  +         +   +  V G++ DLGVSS QI+  DR
Sbjct: 68  RVAGETLKEFAASTVLVKGNFCDMGGLIASICAEKGLEPKVMGILLDLGVSSFQINTPDR 127

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ + GPLDMRM  +   SA+D+VN  + ++L R+    GEE ++  IA AIV  RQ 
Sbjct: 128 GFSYLREGPLDMRMDSNASRSAADIVNGYDEQELARLFYRYGEEPRSRSIARAIVAYRQK 187

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T     + I +         I   +R FQALRI VN E++ L Q L      L   
Sbjct: 188 HGAVTYTQELAAIIRGNAHGGEKVIKTLSRVFQALRIEVNAELDVLRQALYDGIDCLDET 247

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + ++S+HSLEDR+VK+ FA ++      + + +           +T+K ++   +++A
Sbjct: 248 GRMAIISYHSLEDRIVKRVFAEKARSDWGPKGVGLREPLSWGSVAPVTRKPLIAAPDEIA 307

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RSAKLR   +  E
Sbjct: 308 LNSRARSAKLRVIEKIHE 325


>gi|188527446|ref|YP_001910133.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470]
 gi|226709922|sp|B2UTC1|RSMH_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188143686|gb|ACD48103.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470]
          Length = 308

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++       + DK + GV+ DLGVSS+Q+D   RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALEMHDKEIKGVLVDLGVSSLQLDDDSRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A        +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKEAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|261855063|ref|YP_003262346.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus
           c2]
 gi|261835532|gb|ACX95299.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus
           c2]
          Length = 317

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 168/323 (52%), Gaps = 19/323 (5%)

Query: 9   MSSAIHHTIGD-----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60
           M++    T        H  VLL + +  L      V LDATFG GG+S +          
Sbjct: 1   MNALAVSTQEKSEALTHETVLLNEAVEALAVRADGVYLDATFGRGGHSAAILAKLNNHGR 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSM 116
           + A DRD  A++   E +     +F +  A FS    ++        VDGV+FDLGVSS 
Sbjct: 61  LFATDRDLRALA-AGEALASKDARFQIHHAAFSTAAQWLASMGLQGKVDGVLFDLGVSSP 119

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           QID  +RGFSFQ++GPLDMRM+   G +A++ + +A  +++  +L  LG+EK + RIA  
Sbjct: 120 QIDEAERGFSFQQNGPLDMRMNQHAGETAAEWLAEAEEEEIANVLYRLGDEKFSRRIARR 179

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           IV+ R + P  TT DL   I +     ++ R HPATRSFQA+R+ +N E++E++  L   
Sbjct: 180 IVETRAAQPLATTFDLVRCIVEAT-PRRDPRKHPATRSFQAIRLHINRELDEISAALSQV 238

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L  GG L+V+SFHSLEDR+VK F    S      +         A    +    +  
Sbjct: 239 VDLLSIGGRLVVISFHSLEDRIVKNFIRDES---TTDKDFFGQPVGTARLSRV-GGSIRA 294

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           + E++  N RSRSA +R   R  
Sbjct: 295 SAEEIVRNPRSRSAIMRVAERVA 317


>gi|94312067|ref|YP_585277.1| S-adenosyl-methyltransferase MraW [Cupriavidus metallidurans CH34]
 gi|123259838|sp|Q1LIL8|RSMH_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|93355919|gb|ABF10008.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 120/331 (36%), Positives = 185/331 (55%), Gaps = 23/331 (6%)

Query: 9   MSSAIHH--TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63
           MS       T   H  VLL++ +  L   P    +D TFG GG+SR+          ++A
Sbjct: 1   MSPTESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVA 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122
            D+DP A++           +FS+  A+F+++ D       V GV+ DLG+SS QID   
Sbjct: 61  FDKDPAAIAEAGTIK---DARFSIEHASFAEMGDRLAGRGPVAGVLLDLGISSPQIDEAA 117

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    GI+A++ + QA+ +D+ R++   GEE+ A +IA AIV RR+
Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAEWLAQADEQDIARVIRDYGEERFALQIAKAIVARRR 177

Query: 182 SAPF----QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +       TT DL++L+ K V  ++     PATR+FQALRI++N E+E+L +GL++A +
Sbjct: 178 ESGDGGALATTSDLAALVAKAV-KTREKGQDPATRTFQALRIYINQELEDLERGLKAAYE 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291
            L+ GG L+V+SFHSLEDR+VK+F  + +         +       ++      + + + 
Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMQAHARPERDADPALRRAPLRAADLPQPTMKLLGR- 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
              P  E+VA N R+RSA +R   +  E+S 
Sbjct: 296 -FKPGAEEVAGNPRARSAVMRVAEKLGEQSA 325


>gi|32490963|ref|NP_871217.1| hypothetical protein WGLp214 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173030|sp|Q8D2Y8|RSMH_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25166169|dbj|BAC24360.1| yabC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 309

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PV+L +VI  +   P    +DATFG GG+SR           +I +DRDP ++    
Sbjct: 1   MHIPVMLNEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRDPKSIEFAC 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +       FS++  Y     +     G++FDLG+S  QI   +RGFSF   G
Sbjct: 61  SIK---DRRLIPIHGNFSKILKYSIKYKIFGKVQGILFDLGLSFSQIKDSNRGFSFMHDG 117

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA + +N AN+KD++ ++   GEEK   +I++ I K R+     TT++
Sbjct: 118 PLDMRMNNLHGISAKEWINNANIKDISFVIKEFGEEKFYKKISNVICKYRKIKNINTTKE 177

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L +LI K        + HPA RSFQA+RI++NNE++EL   L    K +   G ++ +SF
Sbjct: 178 LVNLINKA-CGYFYKKKHPARRSFQAIRIYINNELQELKLALNDIIKIISPKGRIVFISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR++KKF  + S K +    +    +      +++    K + P+++++ +N++SR
Sbjct: 237 HSLEDRIIKKFIINNSRKKIYPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYNKKSR 296

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 297 SAILRFAEK 305


>gi|317182020|dbj|BAJ59804.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F57]
          Length = 308

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESDLNAQKVINYYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPLSFKCTCSNNYALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|156405687|ref|XP_001640863.1| predicted protein [Nematostella vectensis]
 gi|156227999|gb|EDO48800.1| predicted protein [Nematostella vectensis]
          Length = 378

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 127/350 (36%), Positives = 194/350 (55%), Gaps = 24/350 (6%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNV 61
           S+  +   S    T   H+PV+  + +  L P  G+V +DATFGAGG++ +        V
Sbjct: 18  SRRKRRFLSTQAETHTLHIPVMSRECLGFLAPKDGEVFVDATFGAGGHTCAILNSAKCKV 77

Query: 62  IALDRDPFAVSCGQ--ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVS 114
            A+DRDP AV   Q   T  +YK Q    Q  FS+L + + + G+       ++ D+G S
Sbjct: 78  FAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKFSELFELLSNNGIKKESLDGMLLDIGPS 137

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS---------GISASDVVNQANVKDLTRILGILGE 165
           SMQ D   RGFS  K GPLDMRM              +A+DVVN  + ++L  +L   G 
Sbjct: 138 SMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSRSSSFTAADVVNSISERELISVLRHYGG 197

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFV 221
           E+ A+RI+ A++K R      TT+ L++++   V F + +++    HPAT++FQALRI V
Sbjct: 198 ERDAARISRAVIKARDREHIMTTRQLAAIVANAVGFGRKDKLNRFAHPATKTFQALRILV 257

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N+E+ EL + L++A+K L  GG L+V+SFHS ED +VK F    + +  +      S++ 
Sbjct: 258 NDELNELHKALKAAKKLLTPGGRLVVISFHSAEDSIVKHFLKDEATRKSSK---TMSDSD 314

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331
              +  + KKVV P+ +++ FN R RSAKLRA ++T +  +E     HL 
Sbjct: 315 SITWLPLHKKVVSPSDDEIFFNPRCRSAKLRAVVKTNKEVLELCQLTHLL 364


>gi|212715550|ref|ZP_03323678.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660917|gb|EEB21492.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM
           16992]
          Length = 343

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           +      H PVLL   + L+ P    PG + +D T G  G+S +F K    + +I +DRD
Sbjct: 1   MTDVTTIHQPVLLRDCVDLVAPALANPGSIAVDCTLGLAGHSTAFLKASPHARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   + M+     ++F    A F      + D+    V+ V  DLG+SS+QID  +
Sbjct: 61  TEALALATQRMQMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +   +A  V+   +  DL RI    GEE+ + +IA AIV+RR+
Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQVLADYSFADLARIFRTYGEERFSKQIARAIVRRRE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 IEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F        +     +        F+ +T+  +    E++A
Sbjct: 241 GGRLVVESYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAGDEEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 MNPRSASVRLRAVE 314


>gi|297626718|ref|YP_003688481.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922483|emb|CBL57056.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 342

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 165/319 (51%), Gaps = 11/319 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
            +        HVPV+  +V+ LL+PA   PG V +D T G  G++           ++ +
Sbjct: 4   EATGPDPSTIHVPVMAARVVELLSPALDHPGAVYVDGTLGMAGHAELMLTANPQARLVGI 63

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCG 121
           DRD  A+      +  +  +  L +A F +L   + D G+  +   +FDLG+SS+QID  
Sbjct: 64  DRDHDALDLASRRLAPFGARVHLARARFDELGRVLDDAGIATIDAALFDLGLSSLQIDRA 123

Query: 122 DRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM      +A+ V+N+ +  DL R+L   GEEKQA+RI  AIV  R
Sbjct: 124 DRGFAYRVDAPLDMRMDTRSELTAARVLNEYSPGDLVRVLRDYGEEKQATRIVRAIVAER 183

Query: 181 QSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +  PF  +  L  LI + +        + +PA R+FQALRI VN E+E L+  L      
Sbjct: 184 EREPFTDSARLVDLILRAIPAAVRTKTKGNPAKRTFQALRIEVNGELEALSTVLPVMLGR 243

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           +       V+++HSLEDR+VK+ F + +         +  +   A F  +T+    P   
Sbjct: 244 MGPAARAAVLAYHSLEDRIVKQVFTAATSDSAPAGLPVVPDEMAARFAPLTRGAEKPDAA 303

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++A N RS SA+LRA  R 
Sbjct: 304 EIAENPRSASARLRAIERI 322


>gi|311087120|gb|ADP67200.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 122/316 (38%), Positives = 189/316 (59%), Gaps = 20/316 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++H I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP 
Sbjct: 1   MNH-IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPI 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125
           A S G +       +F +    FS+L D+  ++ +    +G++FDLGVSS+QID   RGF
Sbjct: 60  AFSIGSKIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGF 116

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM    GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q   
Sbjct: 117 SFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKK 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG 
Sbjct: 177 ITSTLELANIIKKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299
           + ++SFHSLEDRLVKKF    S K +    M  +            + I +  ++PTQ +
Sbjct: 236 ISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNE 293

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N R+RS+ LR   
Sbjct: 294 INNNPRARSSVLRIAE 309


>gi|261839470|gb|ACX99235.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 52]
          Length = 302

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E
Sbjct: 1   MHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ ++ +++L    F++      +     + GV+ DLGVSS+Q+D  +RGF+F      
Sbjct: 61  RLKAFEGRYNLLSGGFAKRFKEALETHGKEIKGVLVDLGVSSLQLDDDNRGFNFHSHALD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
                   ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 121 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHSL
Sbjct: 181 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCVISFHSL 235

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +            + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 236 EDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 295

Query: 312 RAGM 315
           R   
Sbjct: 296 RVFQ 299


>gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 345

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 125/293 (42%), Positives = 187/293 (63%), Gaps = 8/293 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVL  +V+  L P  G+  +D TFGAGGY+R+  +     V+ALDRDP A+      +
Sbjct: 21  HIPVLRSEVLETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLL 80

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++  + +L ++ FS+L++   D      VDGVV D+GVSSMQ+D  +RGFSFQ  GPLD
Sbjct: 81  AEFAPRLTLVESPFSRLEEVAQDALGGAQVDGVVLDIGVSSMQLDDAERGFSFQHDGPLD 140

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS +G + +D VN A  + +  ++   GEE ++  IA AIV+RR   P+  T++L+  
Sbjct: 141 MRMSSNGQTVADFVNSAAEEIIANVIYAFGEEHKSRAIARAIVRRRAETPYARTRELADT 200

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + +  +  K +  HPATR+FQALRIF+N+E+ ELA  L +AE+ L+ GG L+VVSFHSLE
Sbjct: 201 VSRVFHGRKVDGRHPATRTFQALRIFINDELGELASALSAAERVLRPGGRLVVVSFHSLE 260

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304
           DR+VKKF A RSGK  +V   +P+    + P  F+ +  + + P++ ++  N 
Sbjct: 261 DRIVKKFIAERSGKTQSVSRHLPTETIKSTPPSFRIVNSRPLTPSKGELDVNP 313


>gi|15618336|ref|NP_224621.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae CWL029]
 gi|15835954|ref|NP_300478.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae J138]
 gi|16752618|ref|NP_444882.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae AR39]
 gi|33241770|ref|NP_876711.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae TW-183]
 gi|20139310|sp|Q9Z8C2|RSMH_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4376702|gb|AAD18565.1| SAM-Dependent Methytransferase [Chlamydophila pneumoniae CWL029]
 gi|7189261|gb|AAF38187.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978793|dbj|BAA98629.1| SAM-dependent methytransferase [Chlamydophila pneumoniae J138]
 gi|33236279|gb|AAP98368.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Chlamydophila pneumoniae TW-183]
 gi|269303297|gb|ACZ33397.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae LPCoLN]
          Length = 297

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 161/303 (53%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+E+ +AL    P +   D T GAGG++ +F +   ++      DRD  A++  ++
Sbjct: 6   HIPVLVEECLALFAQRPPQTFRDVTLGAGGHAYAFLEAYPSLTCYDGSDRDLQALAIAEK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  ++++ S   A+F  L +    +  DGV+ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 66  RLETFQDRVSFSHASFEDLANQPTPRLYDGVLADLGVSSMQLDTLSRGFSFQGEKEELDM 125

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  +   SASDV+N    ++L RI    GEE Q    A A+V  R+     + QD+   
Sbjct: 126 RMDQTQELSASDVLNSLKEEELGRIFREYGEEPQWKSAAKAVVHFRKHKKILSIQDVKEA 185

Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +       + + +IHP T  FQALR++VN E  +L   L SA   L   G L+++SF S 
Sbjct: 186 LLGVFPHYRFHRKIHPLTLIFQALRVYVNGEDRQLKSLLTSAISWLAPQGRLVIISFCSS 245

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK FF                     + + ITKKV+ PT ++V  N RSRSAKLR 
Sbjct: 246 EDRPVKWFFKEAEASG--------------LGKVITKKVIQPTYQEVRRNPRSRSAKLRC 291

Query: 314 GMR 316
             +
Sbjct: 292 FEK 294


>gi|307330443|ref|ZP_07609586.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu
           4113]
 gi|306883868|gb|EFN14911.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu
           4113]
          Length = 310

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 175/307 (57%), Gaps = 10/307 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + +L P    PG V++D T G GG+S +  +      +IALDRDP A+    E +
Sbjct: 1   MLQRCLDMLAPALAQPGAVVVDCTLGLGGHSEALLRDFPEARLIALDRDPSALRLAGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++ +L  A + +L + +       V G++FDLGVSSMQ+D  +RGF++ +  PLDM
Sbjct: 61  APYGDRATLVHAVYDELPEVLDRLGVPRVQGILFDLGVSSMQLDEAERGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G+SA++V+N     +L RIL   GEEK A +I  A+V+ R   PF  +  L  L
Sbjct: 121 RMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKFAKKIVDAVVRERAKEPFTNSARLVEL 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A   L  GG + V+S+HSL
Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAIPAAVGTLAVGGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+ R 
Sbjct: 241 EDRLVKQVFAAGARNTAPPGLPVIPEQYQPRLKLLTRGAELPTEEEIAENRRAAPARFRG 300

Query: 314 GMRTVER 320
             R  E 
Sbjct: 301 AERIREE 307


>gi|169831601|ref|YP_001717583.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis
           audaxviator MP104C]
 gi|263446209|sp|B1I4D9|RSMH_DESAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169638445|gb|ACA59951.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 324

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 9/316 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPF 69
           +  T   H PV+L +V+  L+P PG   +D T G GG++    +  G    ++ +DRD  
Sbjct: 1   MTLTGFRHQPVMLREVLEWLDPKPGGTYVDCTLGGGGHALGVLERIGGRGLLVGIDRDAD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++     +  Y +   L QA F +L   +       V G+++DLGVSS Q+D   RGF 
Sbjct: 61  ALAAAAFRLAGYGDGVRLVQADFRELAAVLRRLETGPVQGILYDLGVSSHQLDTASRGFG 120

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +Q+  PLDMRM    G++A+D+VN+    +L+ ++   GEE+ + RIA  I + R+  P 
Sbjct: 121 YQQDAPLDMRMDPGGGVTAADLVNRLPEDELSDLIKAYGEERWSRRIAAFIARERKREPI 180

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+ +I++ V   ++    HPA R+FQALRI VN+E+  L   L  A   L AGG 
Sbjct: 181 LTTGRLAEVIKEAVPARARRTGPHPARRTFQALRIAVNDELGALKTSLHQAVDLLDAGGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++V+S+HSLEDRLVK  F   +        +             +T +  VP ++++A N
Sbjct: 241 VVVLSYHSLEDRLVKDTFREFAVHCKCPPGLPECRCGVVPRLDILTSRPRVPGEDEIAAN 300

Query: 304 RRSRSAKLRAGMRTVE 319
            R+RSAKLRA  +  +
Sbjct: 301 PRARSAKLRAARKRAD 316


>gi|317009278|gb|ADU79858.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori India7]
          Length = 308

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 169/310 (54%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +    G H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIGGLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKESLETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED+LVK  F   +                + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDKLVKNAFKDYAKNCTCDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|307151535|ref|YP_003886919.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822]
 gi|306981763|gb|ADN13644.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822]
          Length = 299

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 25/319 (7%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62
           +  T  S    +  +HVPVL  ++I+ LN  PG   LDAT GAGG++R   +  +   V 
Sbjct: 2   TKVTQMSTADFSTFNHVPVLTRELISGLNICPGGHYLDATVGAGGHTRKLLESYANVRVT 61

Query: 63  ALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           A+DRD  A++     + +Y  ++ + +Q  F+  +    ++  DG++ DLGVSS Q+D  
Sbjct: 62  AIDRDSTAIAAAAANLAEYNIDRLTFWQGNFANYEA--KEETFDGIIADLGVSSPQLDHP 119

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF+   PLDMRM C   ++A+ V+N  +  +LT+I    GEE+ + +IA  IVK  
Sbjct: 120 ERGFSFRLEAPLDMRMDCGQSLTAATVINTWDETELTKIFYNYGEERLSRQIAKQIVK-- 177

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q   + TT+  + + +      +  RIHPATR FQALRI VN E+E L   L  +   LK
Sbjct: 178 QRPFYSTTELANVIARSVPPKYRYGRIHPATRVFQALRIAVNQELESLLSFLIKSPYWLK 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G++ V+SFHSLEDR+VK  F S                   + + +TKK ++P  ++ 
Sbjct: 238 RDGIIGVISFHSLEDRIVKHQFRSS-----------------PLLKVLTKKPIIPQSDEQ 280

Query: 301 AFNRRSRSAKLRAGMRTVE 319
           A N RSRSAKLR   R   
Sbjct: 281 AKNPRSRSAKLRLAQRQEA 299


>gi|238060255|ref|ZP_04604964.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149]
 gi|237882066|gb|EEP70894.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149]
          Length = 366

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 177/315 (56%), Gaps = 11/315 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL P      + + +DAT G  G++ +  +   +  +I LDRD  A+
Sbjct: 6   GTHVPVLLERCLELLAPALARGDRTVHVDATLGLAGHAEAVLERHPHTVLIGLDRDTEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +       +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 66  AHARVRLARFADRVHLEHAVYDELPEVLGRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 125

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G++A +VVN  +  DL R+L + GEEK A RIA AI++ R+ A   +
Sbjct: 126 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITS 185

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L+++++    +    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 186 SARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K     R      V   +        F+ +++   +P + +VA N R+
Sbjct: 246 VLSYHSLEDRLTKAALTDRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 305

Query: 307 RSAKLRAGMRTVERS 321
            S +LRA  R    +
Sbjct: 306 ASVRLRAAERIDPEA 320


>gi|219682152|ref|YP_002468536.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254813208|sp|B8D7C6|RSMH_BUCAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219621885|gb|ACL30041.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 122/316 (38%), Positives = 189/316 (59%), Gaps = 20/316 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++H I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP 
Sbjct: 1   MNH-IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPI 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125
           A S G +       +F +    FS+L D+  ++ +    +G++FDLGVSS+QID   RGF
Sbjct: 60  AFSIGSKIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGF 116

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM    GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q   
Sbjct: 117 SFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKK 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG 
Sbjct: 177 ITSTLELANIIKKTI-PTKNKFKHPARRSFQAIRIYINQELEEIHKALESTLKILKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299
           + ++SFHSLEDRLVKKF    S K +    M  +            + I +  ++PTQ +
Sbjct: 236 ISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNE 293

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N R+RS+ LR   
Sbjct: 294 INNNPRARSSVLRIAE 309


>gi|17547571|ref|NP_520973.1| S-adenosyl-methyltransferase MraW [Ralstonia solanacearum GMI1000]
 gi|20138981|sp|Q8XVH9|RSMH_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17429875|emb|CAD16559.1| putative s-adenosyl-methyltransferase mraw protein [Ralstonia
           solanacearum GMI1000]
          Length = 319

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 119/324 (36%), Positives = 180/324 (55%), Gaps = 23/324 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VL ++ I  L      + +D TFG GG+SR   +    G  +IA D+
Sbjct: 1   MTTQASTGLRHQTVLRDEAIDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A++           +F++   +F+ L    D      V GV+ DLG+SS QID G R
Sbjct: 61  DPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGAR 117

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR+ 
Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL+SA + 
Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKSAFER 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292
           L+ GG L+V+SFHSLEDR+VK+F        +S      R  + ++  P    + + +  
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           V P++ +V+ N RSRSA +R   R
Sbjct: 295 VRPSEAEVSANPRSRSAIMRVAER 318


>gi|159900036|ref|YP_001546283.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC
           23779]
 gi|263456121|sp|A9B518|RSMH_HERA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159893075|gb|ABX06155.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 337

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 110/330 (33%), Positives = 177/330 (53%), Gaps = 30/330 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVS 72
            +  H+PVL +  +A LN  P    +D T G  G+S    +       ++A+D+DP A++
Sbjct: 1   MVSMHIPVLYDAALAALNLRPDGRYIDGTLGWAGHSSGILEGSGPTGRLLAIDQDPMALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E +  Y E+ ++    + Q+         + VDG++ D+GVSS Q+D  +RGFSFQ 
Sbjct: 61  AARERLAPYGERATIVHGNYRQMASLAAQHGWQQVDGILLDIGVSSPQLDLPERGFSFQY 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+   G SA+D++ Q +   L  ++   GEE+ + RIA  IV++R  +P  +T
Sbjct: 121 DAPLDMRMNPTRGESAADLIAQLDETSLANLIYEYGEERLSRRIARRIVEQRSKSPITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+SL++  V      + HPATR+FQALRI VN+E+  L +GL +A   L  GG L V+
Sbjct: 181 AQLASLVKSAVGGQ-AGKTHPATRTFQALRIAVNDELGALREGLAAATNLLAPGGRLAVI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-------------------RHMIPS---NAHPAVFQ 286
           +FHSLEDR+VK++   ++ + +                       + P      +    +
Sbjct: 240 TFHSLEDRIVKEWMRDQASECLIPAKLEILACPHNCAANTGPRSCIYPVGRDCDYVPTLE 299

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +++K +  T E++  N R+RSAKLR   R
Sbjct: 300 VLSRKPIEATPEELKANPRARSAKLRVAER 329


>gi|297379907|gb|ADI34794.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori v225d]
          Length = 308

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                         ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCVCDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]
 gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]
          Length = 1479

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 127/336 (37%), Positives = 178/336 (52%), Gaps = 30/336 (8%)

Query: 13   IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
            +      HVPV+  + I  L P   ++ +D TFGAGG+++   K    + +I LDRDP A
Sbjct: 1144 MSTEAVRHVPVMAAEAIKFLKPQDSELFIDMTFGAGGHTKQILKAAPNAKIITLDRDPVA 1203

Query: 71   VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGF 125
                QE  + Y  Q       FS+L   + +     + +DG++FD G SSMQ D G+RGF
Sbjct: 1204 HELAQEMAKRYPGQIYPVLGRFSELPAKLKELNVNQRSIDGMIFDFGCSSMQFDEGERGF 1263

Query: 126  SFQKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
            S  K+GPLDMRM         SA+DV+ + +  DL RIL + GEEK A RIA AIV+ R 
Sbjct: 1264 SISKNGPLDMRMDKDRCPDAPSAADVLARIDEMDLARILKVYGEEKFAKRIARAIVEARH 1323

Query: 182  SAPF--QTTQDLSSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSA 235
            S      T +    +        + ++     HPAT++FQALRIFVNNE+ E+  G+  A
Sbjct: 1324 SIKKIETTKELAELVQTCCASEFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILA 1383

Query: 236  EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------P 282
            +  LK GG +I ++FHSLED +VK+         MA +  +   +H              
Sbjct: 1384 QHYLKIGGKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALK 1443

Query: 283  AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
              +  +TK VVVP+  +V  N RSRSAKLRA +R  
Sbjct: 1444 PNWHQMTKHVVVPSDAEVEENPRSRSAKLRAVVRVE 1479


>gi|299065600|emb|CBJ36772.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CMR15]
          Length = 319

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 115/324 (35%), Positives = 181/324 (55%), Gaps = 23/324 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+
Sbjct: 1   MTTQASTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGSGGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A++           +F++   +F+Q+    D      V GV+ DLG+SS QID G R
Sbjct: 61  DPAAITEAG---TVEDARFAIEHDSFAQMGSALDARGIGRVAGVLLDLGISSPQIDEGAR 117

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR+ 
Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P   T +L++L+ + V  ++     PATR+FQALRI +N E+ +L  GL++A + 
Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHINQELADLETGLKAAFER 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292
           L+ GG L+V+SFHSLEDR+VK+F        +S      R  + ++  P    + + +  
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           V P++ +V+ N R+RSA +R   R
Sbjct: 295 VRPSEAEVSANPRARSAIMRVAER 318


>gi|326779858|ref|ZP_08239123.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660191|gb|EGE45037.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf.
           griseus XylebKG-1]
          Length = 321

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 119/320 (37%), Positives = 180/320 (56%), Gaps = 13/320 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +   HVPV+L++ + LL PA      P  V++D T G GG+S +         +IALDRD
Sbjct: 2   SQTRHVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPAARLIALDRD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
             A+    E +  Y ++ +L  A + +L + +       V GV+FDLGVSSMQ+D  DRG
Sbjct: 62  KEALRLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRG 121

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ +  PLDMRM   +G+ A++V+N     +L RIL   GEEKQA RI  A+V+ R+  
Sbjct: 122 FAYAQDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKE 181

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF  +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A  +L  G
Sbjct: 182 PFSNSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVG 241

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+++VA 
Sbjct: 242 GRIAVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAE 301

Query: 303 NRRSRSAKLRAGMRTVERSI 322
           NRR+  A+LR   R      
Sbjct: 302 NRRAAPARLRGAQRIRAEER 321


>gi|182439206|ref|YP_001826925.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|262826728|sp|B1W0I2|RSMH_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|178467722|dbj|BAG22242.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 321

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 119/320 (37%), Positives = 180/320 (56%), Gaps = 13/320 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +   HVPV+L++ + LL PA      P  V++D T G GG+S +         +IALDRD
Sbjct: 2   SQTRHVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPTARLIALDRD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
             A+    E +  Y ++ +L  A + +L + +       V GV+FDLGVSSMQ+D  DRG
Sbjct: 62  KEALRLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRG 121

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ +  PLDMRM   +G+ A++V+N     +L RIL   GEEKQA RI  A+V+ R+  
Sbjct: 122 FAYAQDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKE 181

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF  +  L  LI+  +  + K    +PA R+FQALRI VN E+  L + + +A  +L  G
Sbjct: 182 PFSNSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVG 241

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+++VA 
Sbjct: 242 GRIAVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAE 301

Query: 303 NRRSRSAKLRAGMRTVERSI 322
           NRR+  A+LR   R      
Sbjct: 302 NRRAAPARLRGAQRIRAEER 321


>gi|255536597|ref|YP_003096968.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium
           3519-10]
 gi|255342793|gb|ACU08906.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium
           3519-10]
          Length = 297

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 159/306 (51%), Gaps = 17/306 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H PVLL + +  L   P  + +D TFG GG+S +  +       + + D+D  A+    
Sbjct: 2   YHNPVLLTRSVDDLVTNPDGIYVDVTFGGGGHSAAILRKLSSKGRLFSFDQDLDALKNTI 61

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E      ++F+L    F  L++       KGVDGV+ DLGVSS Q D  +RGFS +   P
Sbjct: 62  E-----DDRFTLINQNFRFLENSLMVYGIKGVDGVLADLGVSSHQFDAAERGFSTRSDAP 116

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+      A  V+N+   + L  I    GE ++A ++A  IV  R+  P +TT+DL
Sbjct: 117 LDMRMNVLQPLDAKKVINEYEEEQLADIFYYYGELREARKLAREIVHHRKLKPIETTEDL 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             L    +   K N+     + FQA+RI VN E+E L + L  +   LK  G L+V+S+H
Sbjct: 177 KKLF-SYIPQFKQNK--FFAQVFQAVRIEVNQELEVLKEMLVQSYNILKPNGRLVVISYH 233

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK++  +   +    R +         F+ +  K V+P   ++  N R+RSAK+
Sbjct: 234 SLEDRLVKRYLKNGMFEGEPARDIY--GNFQKTFELLQTKAVIPDATEIEENSRARSAKM 291

Query: 312 RAGMRT 317
           R G++ 
Sbjct: 292 RVGIKI 297


>gi|119493501|ref|ZP_01624168.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119452684|gb|EAW33864.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 291

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 158/309 (51%), Gaps = 28/309 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           T   H+PVL  ++IA L    G   LDAT G GG+S    +      + A+D+D  A++ 
Sbjct: 2   TNFVHIPVLSRELIAGLFVVAGGHYLDATVGGGGHSLLILQAAPDVRITAIDQDEVAIAA 61

Query: 74  GQETMRDYKEQF----SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +  + + +  F      ++  F+  Q        DG++ DLGV+S Q+D   RGFSF+ 
Sbjct: 62  TRARLAEVEPCFADRVQFWRGNFADYQPQGMQ--FDGIIADLGVNSSQLDTPTRGFSFRH 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           S PLDMRM+    +SA+D++N  +  +L  I    GEE+ + RIA  IV+        TT
Sbjct: 120 SAPLDMRMNLQQSLSAADIINTWDEGELADIFFHYGEERLSRRIARRIVQ--NRPFETTT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           Q    +       S+  RIHPATR FQALRI VN E+  L   L  A + LK GG + V+
Sbjct: 178 QLADVIASCYPSKSRYGRIHPATRVFQALRIAVNQELTALETFLSRAPQWLKLGGRIGVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK+ F S S                   Q +TKK +     ++A N RSRS
Sbjct: 238 SFHSLEDRRVKQSFKSDSD-----------------LQVLTKKPIQAQALEIADNPRSRS 280

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 281 AKLRLAERI 289


>gi|323356558|ref|YP_004222954.1| S-adenosylmethionine-dependent methyltransferase [Microbacterium
           testaceum StLB037]
 gi|323272929|dbj|BAJ73074.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Microbacterium testaceum StLB037]
          Length = 317

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 9/311 (2%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+   LL P    P  V +D T G GG+S +F +      +I LDRD  A+   
Sbjct: 7   HTPVLLERCAELLAPALERPDAVFVDGTLGMGGHSEAFLERFPTARLIGLDRDTDALRIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L    +  + + V       VDG++FDLGVSS+Q+D   RGF++ +  
Sbjct: 67  GERLARFGDRVTLVHTVYDGIAEAVASAGVDKVDGILFDLGVSSLQLDEASRGFAYAQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G++A++V+      DL RI    GEEK A R A AI+  R  AP + +  
Sbjct: 127 PLDMRMDQTQGVTAAEVLATYGEGDLRRIFERYGEEKLAGRYARAIIAARAEAPLERSGQ 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++Q     +     HPA R FQALRI VN E+  L + + +A K L  GG ++V+S+
Sbjct: 187 LVDVLQAATPAAVLRERHPAKRVFQALRIEVNAELSVLERTIPAALKVLGVGGRIVVLSY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
            SLEDRLVK+ FA  +         +    H   F+ + +   + + E+ A N R+   +
Sbjct: 247 QSLEDRLVKRVFAEAAASTAPRGLPVELPEHAPKFRLLVRGAELASDEERAANPRATPVR 306

Query: 311 LRAGMRTVERS 321
           LRA  RT E +
Sbjct: 307 LRAAERTKEDA 317


>gi|308063505|gb|ADO05392.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Sat464]
          Length = 308

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 168/310 (54%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       SG++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESGLNAQKVINSYPVVALEKIFKGYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+RA  
Sbjct: 296 SRSAKMRAFQ 305


>gi|78187960|ref|YP_376003.1| methyltransferase [Chlorobium luteolum DSM 273]
 gi|123582409|sp|Q3B121|RSMH_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78167862|gb|ABB24960.1| methyltransferase [Chlorobium luteolum DSM 273]
          Length = 327

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 19/318 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69
             H PVLL + +  L   P  + +D T G GG+S +  +   +        ++ +D+D  
Sbjct: 7   SYHDPVLLHECVDALVRGP-GLYVDGTLGGGGHSMAILRALESGGWLEGSLLVGIDQDDE 65

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQIDCG 121
           A+      +  Y  +    +  F  +             +     ++ DLGVSS QID  
Sbjct: 66  ALHEAGSRLAAYPGRAVAVKGNFQDIARLASREAVQKGLEPRARAILLDLGVSSRQIDRA 125

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+ ++GPLDMRM  S   +A+D++N A+ ++L  I    GEE ++  IA A++  R
Sbjct: 126 ERGFSYMRTGPLDMRMDSSASTTAADILNDADERELAAIFFRYGEEPRSRAIARAVIAAR 185

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                 ++ +  + I ++V   +   I   +R FQALRI VN E++ L + L      L 
Sbjct: 186 MKHGPLSSTEDLADIVRSVVHGRQPSIRSLSRVFQALRIAVNRELDVLQRVLEDGVSVLD 245

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299
            GG + V+S+HSLEDR+VK++FA++S      + + +           +T+K VV ++++
Sbjct: 246 EGGRIAVISYHSLEDRMVKQYFAAQSKCDWGPKGVGLREPLSRGTLVPVTRKAVVASEDE 305

Query: 300 VAFNRRSRSAKLRAGMRT 317
           V  N RSRSAKLR   +T
Sbjct: 306 VRVNPRSRSAKLRVAEKT 323


>gi|83748758|ref|ZP_00945773.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551]
 gi|207721512|ref|YP_002251952.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           MolK2]
 gi|207744409|ref|YP_002260801.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           IPO1609]
 gi|83724579|gb|EAP71742.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551]
 gi|206586672|emb|CAQ17258.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           MolK2]
 gi|206595814|emb|CAQ62741.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           IPO1609]
          Length = 319

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 23/324 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+
Sbjct: 1   MTTQASTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A++           +F++   +F+ L    D      V GV+ DLG+SS QID G R
Sbjct: 61  DPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGAR 117

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR  
Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL++A + 
Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFER 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292
           L+ GG L+V+SFHSLEDR+VK+F        +S      R  + ++  P    + + +  
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           V P++ +V+ N R+RSA +R   R
Sbjct: 295 VRPSEAEVSANPRARSAIMRVAER 318


>gi|298245975|ref|ZP_06969781.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM
           44963]
 gi|297553456|gb|EFH87321.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM
           44963]
          Length = 320

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 151/305 (49%), Gaps = 14/305 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + +    HV V+LE+V+  L P PG   +D T G GG++    +       V+ +D D  
Sbjct: 1   MENEQTRHVSVMLEEVMEYLRPQPGGHYIDGTLGGGGHTSVLLERSAPDGKVLGIDTDSK 60

Query: 70  AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRG 124
           A +  Q  +     + +  L    FS ++    +        ++ DLG SS Q+D   RG
Sbjct: 61  AQARVQARLSKEVAEGRLILSHGNFSDMERLAQEAQFTSVDGILLDLGFSSDQMDDPQRG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF   GPLDMR+S    ++A+D+VN    ++L  I    GEE+++ +IA  I + RQ  
Sbjct: 121 FSFSADGPLDMRLSQDLSLTAADLVNNTGEEELADIFWRYGEERRSRQIARRIGRERQKR 180

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK--- 240
               T  L+ +        K   IHPATR FQALRI VN E+E L   L      L+   
Sbjct: 181 AITRTSQLAEIA-AAGVPYKYGAIHPATRVFQALRIAVNQELESLETALPQMLSLLQAGG 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299
             G +++++FHSLEDR+VK+F    +   +    +      H A  + +T K +VP +++
Sbjct: 240 KQGRMVIIAFHSLEDRIVKEFLRREARDCLCPPRIPMCICGHKASLRILTNKPIVPGEQE 299

Query: 300 VAFNR 304
           VA N 
Sbjct: 300 VAANP 304


>gi|262341157|ref|YP_003284012.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272494|gb|ACY40402.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 301

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 14/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL++ I  L      + +DATFG GG+S +  K  +    +IALD+D  ++     
Sbjct: 10  HEPVLLKESIENLITDKNGIYVDATFGGGGHSYAILKKLNKRGILIALDQDKESIKR-NF 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                   F         + +    + V G++ DLG+SS+QID   RGFS Q +  LDMR
Sbjct: 69  IKDKRFHLFHNNFIHIRDILNQNHIEKVSGILVDLGLSSLQIDNPTRGFSNQWNCTLDMR 128

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+     SA +V+N+ + K+L  I    GE K A +I   I+K+R       T DLS+L 
Sbjct: 129 MNQESSYSAQNVINECSKKELFHIFYEYGEFKNAKKIVEKILKKRFQKNITNTLDLSNLF 188

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
              ++ S   R     R FQ++RI VNNEI  L   L  + K +  GG + V+S+HS+ED
Sbjct: 189 F--IHGSFKKRKRFLARLFQSIRIEVNNEINILKDFLLESSKIILPGGRIAVISYHSIED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+ K F              +P       F+ I KKV+ P+ +++  N RSRSA+LR   
Sbjct: 247 RITKYFLKEEFLIKKMNFKTLP-------FRMIHKKVIKPSFQEIIRNPRSRSARLRIAE 299

Query: 316 RT 317
           + 
Sbjct: 300 KV 301


>gi|330469297|ref|YP_004407040.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris
           AB-18-032]
 gi|328812268|gb|AEB46440.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris
           AB-18-032]
          Length = 394

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 115/328 (35%), Positives = 179/328 (54%), Gaps = 11/328 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA--PGK--VILDATFGAGGYSRSFCKM 57
           E    K +   +    G HVPVLLE+ + LL PA   G   V +DAT G  G++ +  + 
Sbjct: 18  EENKVKPVGVDMGELRGTHVPVLLERCLELLAPALGRGGRTVHVDATLGLAGHAEAVLQA 77

Query: 58  GSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLG 112
                ++ LDRD  A+   +  +  + ++  L  A + +L + +       VDG++FDLG
Sbjct: 78  HPETILVGLDRDTEALEHARVRLARFADRVHLEHAVYDELPEVLDRLGYPTVDGILFDLG 137

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS+Q+D  DRGF++ +  PLDMRM    G++A +VVN     +L R+L + GEEK A R
Sbjct: 138 VSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYTHPELARVLRVYGEEKFAGR 197

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AI++ R+     ++  L+ L+++++    +    HPA R+FQALRI VN E+  L  
Sbjct: 198 IASAIIRERERVRITSSARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAVLET 257

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L +A   L  GG L+V+S+HSLEDRL K+  A R      +   +        F+ +++
Sbjct: 258 ALPAALDRLSVGGRLVVLSYHSLEDRLTKQALADRVRSTGPIDLPVELPGSEPTFRLLSR 317

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
              +P + +VA N R+ S +LRA  R  
Sbjct: 318 GAELPGEAEVAANPRAASVRLRAAERID 345


>gi|313681992|ref|YP_004059730.1| s-adenosyl-methyltransferase mraw [Sulfuricurvum kujiense DSM
           16994]
 gi|313154852|gb|ADR33530.1| S-adenosyl-methyltransferase MraW [Sulfuricurvum kujiense DSM
           16994]
          Length = 307

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 12/305 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
             H+PVL  +VI   +P    +++D T G GG+S    +     ++I +D+DP A++   
Sbjct: 4   TPHIPVLYREVIEAFSPCKEGIVIDCTMGYGGHSSLLLENNPALSLIGIDQDPTAIAFSS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  +  + +  FS++     ++  + +     D+GVSS+Q+D  +RGFS++    
Sbjct: 64  KRLEPFGNRVEIRRGRFSEVARDAIEEKGEKICGILADIGVSSLQLDQRERGFSYESDTL 123

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                  + +SA +VVN  +   L  IL   GE   A ++A  IV+RR   PF + ++LS
Sbjct: 124 DMRMNPDAPLSAGEVVNDYSQGALETILREYGEVTNARKVAETIVQRR---PFSSAKELS 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I       K  +IHP+T   QA+RI VN+E+ EL + L + E +      + +++FHS
Sbjct: 181 NAIFH--LMPKGKKIHPSTLVMQAIRIEVNDELGELTRLLDAIEASKLKHLRVAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F       +              A+ + ITKK +    +++  N RSRSAK
Sbjct: 239 LEDRIVKNRFTKWGKNCICPDDAMRCTCGNKNAIGKIITKKPLSAQDDELRANSRSRSAK 298

Query: 311 LRAGM 315
           LR   
Sbjct: 299 LRIFE 303


>gi|94970665|ref|YP_592713.1| S-adenosyl-methyltransferase MraW [Candidatus Koribacter versatilis
           Ellin345]
 gi|263433351|sp|Q1IKG1|RSMH_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94552715|gb|ABF42639.1| methyltransferase [Candidatus Koribacter versatilis Ellin345]
          Length = 313

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 171/312 (54%), Gaps = 26/312 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               HV VL ++ I  L    G   LDAT G GG+S    K      ++IALD+D  A+ 
Sbjct: 16  EQFSHVSVLSQEAIDFLAIRRGGTYLDATLGLGGHSYEIAKRLGAQGHLIALDKDTNALE 75

Query: 73  CGQETMRDYKEQF-------SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
             +  +    +         +L  A+F++++ ++  K +DGV+ DLG+SSMQ+    RGF
Sbjct: 76  MARRRLEQVPDDLKEDWPQITLLHASFAEMKQHIASKSLDGVLADLGISSMQLQDAGRGF 135

Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SFQ  GPLDMRM+  G  +A  VVN  + ++L  ++   GEE+++ RIA AI + R    
Sbjct: 136 SFQAEGPLDMRMNPHGDLTAEQVVNHTSERELADVIYEFGEERRSRRIARAICRARPIRT 195

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
                 + S+  + +  ++  RIHPAT++FQALRIFVN+E+++L + L S    L   G 
Sbjct: 196 TAHLAQVISVAARPMNQAER-RIHPATKTFQALRIFVNHELDDLKELLASVPSRLVPRGR 254

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK      +                  ++ +TKK V  T+E++  N 
Sbjct: 255 LVVISFHSLEDRIVKDSLRDGASAG--------------KYELLTKKPVTATEEEIDRNP 300

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLRA  R
Sbjct: 301 RSRSAKLRAAAR 312


>gi|110004576|emb|CAK98913.1| probable s-adenosyl-methyltransferase mraw protein [Spiroplasma
           citri]
          Length = 313

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL++ IA LN     + +D T G  G+S    K      +   ++D  A+  
Sbjct: 1   MEFKHQTVLLQEAIAGLNILNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIIA 60

Query: 74  GQETMRDYK-EQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++ +++ K   + + +  F  L         K V+G+++DLGVSS Q+D  +RGFS++ 
Sbjct: 61  SKQILQESKYHNYEIIKNNFVNLAAELQVRQVKAVNGILYDLGVSSPQLDDDNRGFSYRY 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM+     +A  +VN  + + L ++    GEE  A  IA  IV  R +    TT
Sbjct: 121 DSLLDMRMNQKQELTAKIIVNTYSQEALAKLFQDYGEEPFAKVIAKNIVIARNTQEIVTT 180

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+K++      +  HPA R FQALRI VN E+  L + L  A   L   G L+V
Sbjct: 181 FHLVEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLLQATTLLAVHGRLVV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VKK+F S +        + +   +   + +Q I KK +VP+  + A N R
Sbjct: 241 ISFHSLEDRIVKKYFQSLTKDPNYEINQQLPVISHFESNYQIIIKKAIVPSGTEQARNHR 300

Query: 306 SRSAKLRAGMRTV 318
           S SAKLR   R  
Sbjct: 301 STSAKLRILERVK 313


>gi|73988949|ref|XP_534100.2| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Canis familiaris]
          Length = 694

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 129/335 (38%), Positives = 184/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G++ LD TFG+GG++R+  +  S+  + ALDRDP A +  ++ 
Sbjct: 359 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 418

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV      GV+ D G SSMQ+D  +RGFS +K GP
Sbjct: 419 SELYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDPGCSSMQLDAPERGFSLRKDGP 478

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 479 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 538

Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S+         V+  K       H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 539 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 598

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRS-------------------GKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F    S                   G           +  
Sbjct: 599 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQALKLGSGRENMEGASISKA 658

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  ++V  N R+RSAKLRA ++
Sbjct: 659 PLMWELIHKKVLTPDDQEVQENPRARSAKLRAAIK 693


>gi|108804337|ref|YP_644274.1| methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|123069097|sp|Q1AVW6|RSMH_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108765580|gb|ABG04462.1| methyltransferase [Rubrobacter xylanophilus DSM 9941]
          Length = 312

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 167/314 (53%), Gaps = 11/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H PV+LE+ +  L P+ G V++DATFG GG+S    +    G  V+ +DRDP A  
Sbjct: 2   AAAQHRPVMLEEAVRALAPSGGDVVVDATFGGGGHSARVLRELGPGGRVVGIDRDPEARG 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  + D +  F          +     +  D ++FDLG+SS Q+D   RGFS+ + GP
Sbjct: 62  RAERLLGDPRFSFEQGPYDEVLWRMVGRGERADALLFDLGLSSFQVDDPRRGFSYTREGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+D +N A   ++  +L   G+  +A +      +  +  P +TT DL
Sbjct: 122 LDMRMDPGSGPSAADFLNAAGEAEIAGVLSEYGDVPRA-QARRVAREILRRRPLRTTADL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              ++  V ++     +PA R FQA+RI VN+E+  L + L +AE+ L  GG L+V+SFH
Sbjct: 181 REAVRAAVGWAPRGG-NPAKRVFQAVRIRVNDELGGLRRALEAAERLLVPGGRLVVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVV-VPTQEDVAFNRRSRSA 309
           S EDRLVK+F A R G+      +         VF+   +  V  P++ +VA N RS  A
Sbjct: 240 SGEDRLVKRFIAEREGRCTCPPELPVCVCGARPVFR---RGPVLRPSEREVAENPRSAPA 296

Query: 310 KLRAGMRTVERSIE 323
           ++R   RT E + E
Sbjct: 297 RMRVAFRTAEPARE 310


>gi|307544543|ref|YP_003897022.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581]
 gi|307216567|emb|CBV41837.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581]
          Length = 318

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 168/320 (52%), Gaps = 16/320 (5%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
           MSS           H  VLL+  +  L   P    LD TFG GG+SR+  +       ++
Sbjct: 1   MSSPASEQPSRGFRHASVLLDGAVETLVHDPSGRYLDGTFGRGGHSRAILERLSPQGRLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQI 118
           A+DRDP A+            +F+  +  F++L D+     +     G++ D+GVSS Q+
Sbjct: 61  AIDRDPQAIQEAAAI---EDARFAFERGDFARLGDFARAHDLHGKLDGILLDVGVSSPQL 117

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF + GPLDMRM    G SA+  + +A+  ++ R+    GEE+ A R+A AIV
Sbjct: 118 DDPERGFSFLRDGPLDMRMDPEHGESAAAWIARADEGEIARVFKTYGEERFARRLARAIV 177

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            RR    F  T DL+ +I+      +  + HPATR+FQALRI VN E+E+L   L +A +
Sbjct: 178 ARRGERAFTRTADLAEVIKAAHPAWEKGK-HPATRAFQALRIQVNGELEQLDLALEAALE 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPT 296
           AL  GG L+V+SFHSLEDR VK+F          +   IP        +     K   PT
Sbjct: 237 ALAPGGHLVVISFHSLEDRRVKRFIRDHVRGDTHLPRGIPLRDDQIQRRLEALGKARRPT 296

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            E+V  N R+RSA +RA  +
Sbjct: 297 SEEVEDNPRARSAVMRAARK 316


>gi|291457557|ref|ZP_06596947.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213]
 gi|291380610|gb|EFE88128.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213]
          Length = 350

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 118/325 (36%), Positives = 166/325 (51%), Gaps = 14/325 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H PVLL+  + L+ PA    G V +D T G  G+S +F K      +I +DRD
Sbjct: 1   MIDVTNIHQPVLLDDCVNLVAPALQHEGAVAVDCTLGLAGHSTAFLKAAPQARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   E M      ++F+   A F QL   + D+    VD V  DLG+SS+QID  D
Sbjct: 61  SEALALATERMVQEGLSDRFTPVHAAFDQLDQVLADQGVERVDAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  ++   ++  L R+    GEE+ A +IA  IV RR 
Sbjct: 121 RGFSYSHDAPLDMRMDVSQNLTAERILADYDMASLIRVFREYGEERFARQIAREIVSRRT 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT  L++L++  V  +     +PA R FQALRI VN E+++L+  L  A   L+ 
Sbjct: 181 QTPFTTTGQLNALVEDVVPKAHRPAGNPAKRVFQALRIEVNGELDKLSSILPQAANRLQV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F A            I  +     F+ +T+  +    E+  
Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLKIDAPANLPIVPDDAQPFFRELTRGAIKADDEERQ 300

Query: 302 FNRRSRSAKLRAGM---RTVERSIE 323
            N RS S +LRA     R  ER  E
Sbjct: 301 RNPRSASVRLRAVELSRRIPERWRE 325


>gi|89898443|ref|YP_515553.1| S-adenosyl-methyltransferase MraW [Chlamydophila felis Fe/C-56]
 gi|123483153|sp|Q253Y0|RSMH_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89331815|dbj|BAE81408.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 155/308 (50%), Gaps = 20/308 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAV 71
                H+PVL+ + ++L      K   D T GAGG++ +F     +++     DRD  A+
Sbjct: 2   SEAPQHIPVLVNECLSLFADRNPKFFCDVTLGAGGHAEAFLSAYPSIVSYDGSDRDTMAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KS 130
           S  +E +  +  +  L  A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ   
Sbjct: 62  SLAKERLEKFGNRVHLHHASFEDLAQNPRENVYDGILADLGVSSMQLDTLSRGFSFQGDD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM    G +AS+V+N    +DL RI    GEE Q    A AIV+ R+     T +
Sbjct: 122 HDLDMRMDTSKGTTASEVLNTLREEDLGRIFREYGEEPQWKNAAKAIVQFRRHKKIITVR 181

Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL     +     +   +IHP T  FQALR++VN E  +L   L SA + L   G LI++
Sbjct: 182 DLKEATTRVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVFLESAMRWLAPEGRLIII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SF S EDR VK FF                     V + +TKKVV+PT E+   N R RS
Sbjct: 242 SFCSSEDRPVKWFFREAEAMG--------------VGKILTKKVVMPTYEETRKNPRCRS 287

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 288 AKLRCFEK 295


>gi|268318248|ref|YP_003291967.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252]
 gi|262335782|gb|ACY49579.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252]
          Length = 327

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 181/330 (54%), Gaps = 18/330 (5%)

Query: 1   MESKSCKTMS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
           M  +S  T + +A  +    HVPVL + V+  L   P    +DAT G GG++ +      
Sbjct: 1   MSERSAHTDTGAAGPYGSPYHVPVLWKAVVEGLVTDPAGCYVDATIGGGGHAAALLDALA 60

Query: 59  --SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDL 111
               VI +DRDP A+   +  + D     +  L Q  F+ L+  +       +DG++ DL
Sbjct: 61  PEGRVIGIDRDPEALEAVRRRLSDAIEAGRLQLVQGNFADLEAILDRLGVAQIDGLLLDL 120

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQA 169
           GVSS Q+D   RGFSFQ  GPLDMRM     G +A+ ++ + +  +L  +L   GEE +A
Sbjct: 121 GVSSHQLDEALRGFSFQAEGPLDMRMDPTSPGPTAAQLLERWSEYELAEVLRRYGEEPRA 180

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI + R   P +TT +L+ ++++ V   +  +     R FQALRI VN+E++ L 
Sbjct: 181 RKLARAICRAR---PIRTTAELAEVVRREVSPKEATKT--LARVFQALRIAVNDELQALE 235

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L +A + ++ GG L+V+S+HSLEDR VK+F    + K   VR         A ++ +T
Sbjct: 236 RALEAATRRVRPGGRLVVLSYHSLEDRRVKRFLRYGNLKGEPVRDFY--GRLIAPWRPLT 293

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           ++ + P+ ++VA N R+RSA+LR   R  E
Sbjct: 294 RRAIRPSDDEVAANPRARSARLRIAERVAE 323


>gi|193213705|ref|YP_001999658.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327]
 gi|263445798|sp|B3QLX2|RSMH_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193087182|gb|ACF12458.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327]
          Length = 318

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 18/317 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPF 69
               H PVL +   +LL   P  + +D T G GG+S    +        S ++ +D+D +
Sbjct: 3   NQEYHEPVLADATTSLLVTRP-GIYIDGTLGGGGHSLELLRRLDALDGESLLVGIDQDSY 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCG 121
           A+    + ++D+ ++  L +  FS +++ +            V G++ DLGVSS QID  
Sbjct: 62  ALEAAGQKLQDFGDKAILLRGNFSMVRELLAPVKRGPGEGLEVMGLLLDLGVSSFQIDTP 121

Query: 122 DRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFS+ + GPLDMRM   G  +A+D+VN    + L R+    GEE    RIA A+V  R
Sbjct: 122 VRGFSYLRDGPLDMRMDPDGPLTAADIVNDYEEQALARLFFRYGEEAHGGRIARAVVSAR 181

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             AP  TT  L+ ++++     K++ I   +R +QALRI VN+E+  L Q L      L 
Sbjct: 182 SVAPITTTGGLAEVVRRA-CPRKDSPIKTLSRIYQALRIEVNDELGVLQQALEDGFAVLS 240

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299
            GG   V+S+HSLEDR+VK+FF++R       + +       PA  + +T+K V   + +
Sbjct: 241 PGGRFAVISYHSLEDRIVKRFFSARCTADWGPKGLPLREPLKPAEAELVTRKSVQAGEAE 300

Query: 300 VAFNRRSRSAKLRAGMR 316
           V+ N R+RSA+LR   +
Sbjct: 301 VSRNPRARSARLRVIQK 317


>gi|217034743|ref|ZP_03440143.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10]
 gi|216942736|gb|EEC22294.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10]
          Length = 324

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 24  HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 83

Query: 78  MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F       
Sbjct: 84  LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNFHSHALDM 143

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
                  ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS  
Sbjct: 144 RMNLEGDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSDF 203

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHSLE
Sbjct: 204 LSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCVISFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           D LVK  F   +   +            + A+ + +TKK + P+ E++  NRRSRSAK+R
Sbjct: 259 DSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKMR 318

Query: 313 AGM 315
              
Sbjct: 319 VFQ 321


>gi|320011279|gb|ADW06129.1| S-adenosyl-methyltransferase MraW [Streptomyces flavogriseus ATCC
           33331]
          Length = 321

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/321 (37%), Positives = 182/321 (56%), Gaps = 15/321 (4%)

Query: 16  TIGDHVPVLLEKVIALLNP-------APGKVILDATFGAGGYSRSFCKMGS--NVIALDR 66
           +   HVPV+L++ + LL P        P  V++D T G GG+S +         ++ALDR
Sbjct: 2   SQTRHVPVMLQRCLDLLAPALEATGPQPP-VVVDCTLGLGGHSEALLAAFPAARLVALDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123
           D  A+    E +  Y ++ +L  A + +L + +       V GV+FDLGVSSMQ+D  DR
Sbjct: 61  DKEALRLSGERLAPYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADR 120

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM  + GI A++V+N     +L RIL   GEEKQA RI  A+V+ R+ 
Sbjct: 121 GFAYAQDAPLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREK 180

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF  +  L  LI+ ++  + K    +PA R+FQALRI VN E+  L + + +A ++L  
Sbjct: 181 EPFSNSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVRSLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E+VA
Sbjct: 241 GGRIAVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVA 300

Query: 302 FNRRSRSAKLRAGMRTVERSI 322
            NRR+  A+LR   R  E   
Sbjct: 301 ENRRAAPARLRGAQRIREEER 321


>gi|261337512|ref|ZP_05965396.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM
           20093]
 gi|270277911|gb|EFA23765.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM
           20093]
          Length = 356

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 155/314 (49%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67
           + H    H PVLLE+ + L+ PA   PG V++D T G  G++ +F K   N  ++ +DRD
Sbjct: 1   MDHITQIHQPVLLEQCVDLVVPALNAPGSVVVDCTLGLAGHATAFLKAAPNATLLGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   + M      ++F    A F      V       V  V  DLG+SS+QID  +
Sbjct: 61  AEALALATQRMEHEGLADRFIAVHAAFDDFGQAVDAHGLGPVQAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +   +A  ++   +   L RI    GEE+ A +IA  IV  R 
Sbjct: 121 RGFSYSHDAPLDMRMDTTQPLTAQTILATYDEASLARIFKDYGEERFARQIARRIVSTRN 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+   +  +     +PA R FQALRI VN E+++L + L      L  
Sbjct: 181 REPLTTSAQLNRLVDAVIPQAHRASGNPAKRVFQALRIEVNGELDKLRRTLPQIANRLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLEDR VK F        +     +  +     F ++TK  +    E++ 
Sbjct: 241 GGRLVVESYHSLEDRTVKTFMQQGLSIDVPADMPVIPDDAQPFFSALTKGALKADAEEIE 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 HNPRSASVRLRAVE 314


>gi|148244441|ref|YP_001219135.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii
           HA]
 gi|263504496|sp|A5CX97|RSMH_VESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146326268|dbj|BAF61411.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 307

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 168/307 (54%), Gaps = 14/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  V+  + +  LN     + +DATFG GG+++           +IA D+D  A+    
Sbjct: 5   YHQSVMFNESMYALNIKTDGIYIDATFGRGGHAQGILNRLSKKGRLIAFDQDINAIEYAN 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + +     + +L  + FS++   +  +     +DG++ DLGVSS Q++   RGFSF+  G
Sbjct: 65  KNL--VDNRLTLIHSAFSKMLSIITKQGLIGRIDGILIDLGVSSPQLENAQRGFSFRVDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G+SA+  +  AN +++  ++     EK++  IA+ I K +++   +TT +
Sbjct: 123 PLDMRMNQTTGMSATQWLKSANEEEIANVIYQFSNEKKSRHIANKIKKYQKNHVLETTLE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++++ K V   KN   HPATR+FQA+RIF+N E+++L   L  ++  L   G L ++SF
Sbjct: 183 LANIVSKVVKKQKN--KHPATRTFQAIRIFINQELKQLISVLEQSKDILSKNGRLSIISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HS+EDR+VK+F    S +    + +          +     K +  ++ ++  N+R+RSA
Sbjct: 241 HSIEDRIVKRFIQKNSRQKTLPKGLPIIENEIEKTYLKDLGKYLT-SKAEIDNNKRARSA 299

Query: 310 KLRAGMR 316
            LR   +
Sbjct: 300 ILRVASK 306


>gi|281356442|ref|ZP_06242934.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC
           BAA-548]
 gi|281317134|gb|EFB01156.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC
           BAA-548]
          Length = 314

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 181/318 (56%), Gaps = 16/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNV--IA 63
           M +A      +H+PVL  +V+  L   +  P ++ +D T G GG+S    +    +  + 
Sbjct: 1   MEAA-----FEHIPVLRREVLKYLTFPSDRPARL-IDGTVGGGGHSALLLRRYPQLELLG 54

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDC 120
           +DRD  A++   ET+     + +L +  +S L         + VDG++ D+GVSS Q+D 
Sbjct: 55  IDRDENALAKAAETLAFAGNRVTLVRGDYSSLAGRAAEHGWEEVDGILLDIGVSSPQLDH 114

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFS++  GPLDMRM      +AS  +N+A+ ++L R+L   GE  ++ R+A AIVK+
Sbjct: 115 AGRGFSWRAEGPLDMRMDQRSELTASRFLNRASEQELERVLREYGEVDKSRRVAAAIVKK 174

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R++ PF TT DL  L  + +  SK  ++   T  FQALRI VN+E+ EL + L +AEK L
Sbjct: 175 RETHPFATTADLVGLCDEVLGKSKPGKLPAPTLVFQALRIAVNDELGELERALPAAEKLL 234

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298
           K GG ++V+SFHSLEDR+VK +F   +   +    +        +  + +T KVV   ++
Sbjct: 235 KKGGRIVVISFHSLEDRIVKNYFRDAAASCICPPGLPVCVCGKQSTLKVLTNKVVTARED 294

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A NRRS  A+LRA  +
Sbjct: 295 ELAENRRSAPARLRAAEK 312


>gi|317177525|dbj|BAJ55314.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F16]
          Length = 308

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F       
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNFHSHALDM 127

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
                  ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS  
Sbjct: 128 RMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKITERRAKKPFKDAKDLSDF 187

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHSLE
Sbjct: 188 LSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCVISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           D LVK  F   +   +            + A+ + +TKK + P+ E++  NRRSRSAK+R
Sbjct: 243 DALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKMR 302

Query: 313 AGM 315
              
Sbjct: 303 VFQ 305


>gi|226360238|ref|YP_002778016.1| S-adenosyl-methyltransferase MraW [Rhodococcus opacus B4]
 gi|262825479|sp|C1AU63|RSMH_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226238723|dbj|BAH49071.1| methyltransferase MraW [Rhodococcus opacus B4]
          Length = 338

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 18/322 (5%)

Query: 20  HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H+PVLL +   LL PA       G   V++DAT G GG+S  F +      ++ALDRDP 
Sbjct: 17  HIPVLLHRADELLGPALTANDPHGGGAVMIDATLGLGGHSEHFLRTYPQLRLVALDRDPH 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+      +  + ++ +     +  ++D        P + V G++FDLGVSSMQ+D  DR
Sbjct: 77  ALEIAGGRLAPFADRITFVHTRYDGIEDALTQAGLSPRESVHGILFDLGVSSMQLDESDR 136

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + GI+A++V+N  +  DL RIL   GEE+ A +IA  +V++R  
Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEVVRQRAK 196

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +T+   ++    HPA R+FQALR+ VN E++ L   + +A  AL  
Sbjct: 197 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+    RS         +        F+ +T+     +++++ 
Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEIE 316

Query: 302 FNRRSRSAKLRAGMRTVERSIE 323
            N RS   +LRA  R   RS  
Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338


>gi|207092313|ref|ZP_03240100.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 308

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDVLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAG 314
           SRSAK+R  
Sbjct: 296 SRSAKMRVF 304


>gi|300702954|ref|YP_003744556.1| s-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CFBP2957]
 gi|299070617|emb|CBJ41912.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CFBP2957]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 23/324 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66
            +    T   H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+
Sbjct: 1   MTTQASTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLLLERLGPGGRLIAFDK 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A++           +F++   +F+ L    D      V GV+ DLG+SS QID G R
Sbjct: 61  DPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGAR 117

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR  
Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSE 177

Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL++A + 
Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFER 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292
           L+ GG L+V+SFHSLEDR+VK+F        +S      R  + ++  P    + + +  
Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           V P++ +V+ N R+RSA +R   R
Sbjct: 295 VRPSEAEVSANPRARSAIMRVAER 318


>gi|317012519|gb|ADU83127.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Lithuania75]
          Length = 308

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 169/310 (54%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QKIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|283953941|ref|ZP_06371470.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794546|gb|EFC33286.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 309

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   N+  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPNLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +  + ++ +  Q+ F ++ +     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLEHFHDRITFIQSNFGEILEKISHKEDLRGILADIGVSSFQLDNNERGFSLNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA ++VN    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIVNTYTKEQLTSIFKEYGELHDAHFIAEKICLARNKNPIKSAKELCQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K+    +  +I  AT  FQA+RI VN E++ L    +  E       +L +++FHSLED
Sbjct: 184 GKSKQNHR--KISKATLVFQAIRIEVNQELKVLKDFFKYLENLKPKNCILAIINFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FF   +   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKNFFKKWAKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|67925208|ref|ZP_00518575.1| methyltransferase [Crocosphaera watsonii WH 8501]
 gi|67852944|gb|EAM48336.1| methyltransferase [Crocosphaera watsonii WH 8501]
          Length = 292

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 25/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVL + ++  L   P    LDAT G GG+SR          V  +D D  A++  Q  
Sbjct: 8   HTPVLPQALLDGLAIDPNGHYLDATLGRGGHSRLILATFPDVRVTGIDLDDEAIATTQGN 67

Query: 78  MRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + + + ++  ++Q  F+     + +   +G++ DLGVSS Q D  +RGFSF+   PLDMR
Sbjct: 68  LSELFGDRLQVWQGNFADYSGKIGE--FNGIIADLGVSSPQFDVAERGFSFRHQAPLDMR 125

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    ++A++++N  +   L  +    GEE+++  IA  IV+  Q     TT    ++ 
Sbjct: 126 MNRQQSLTAAEIINHWDQTSLADLFYQYGEERRSRVIARRIVQ--QRPFETTTALAEAIA 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +  RIHPATR FQALRI VN+E+  L + L  A   LK GG + ++SFHSLED
Sbjct: 184 LCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSLED 243

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK  F                     +   +TKK ++P  E+ A N RSRSAKLR   
Sbjct: 244 RRVKYSFRDSL-----------------LLDVVTKKPIIPQAEEQANNPRSRSAKLRFAQ 286

Query: 316 RTV 318
           R  
Sbjct: 287 RKA 289


>gi|50842237|ref|YP_055464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           KPA171202]
 gi|54036174|sp|Q6A9R0|RSMH_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50839839|gb|AAT82506.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           KPA171202]
 gi|315107070|gb|EFT79046.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL030PA1]
          Length = 337

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62
            M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++
Sbjct: 2   LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID
Sbjct: 62  GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV 
Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P 
Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++VA N RS SA+LR   R 
Sbjct: 302 ADEVATNPRSASARLRVIERV 322


>gi|262831548|sp|A9WRE6|RSMH_RENSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 331

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 119/328 (36%), Positives = 183/328 (55%), Gaps = 16/328 (4%)

Query: 9   MSSAIHHTIGD-HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM-- 57
           M++         HVPVL ++ + LL PA           V++DAT G GG+S +      
Sbjct: 1   MATTPPPADAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFE 60

Query: 58  GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVS 114
             ++I +DRD  A+      ++ ++++  L  A + ++ + + D   + +DGV+ DLGVS
Sbjct: 61  NLHLIGIDRDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVS 120

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S+Q+D  +RGF++    PLDMRM    G SA+DVVN  +  +L  I+   GEEK A RIA
Sbjct: 121 SLQLDEAERGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIA 180

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGL 232
           + IV  R   PF  T +L  +I+K V  +      HPA R+FQALRI VN E+  L + +
Sbjct: 181 NRIVAARAEKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAV 240

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
            +A  AL  GG  +V+S+HSLED++VKKFF++           +  ++     +++TK  
Sbjct: 241 PAAVDALAIGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGT 300

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            VPT+ ++A N R+ SA+LRA  R   R
Sbjct: 301 EVPTEAEIAENPRAASARLRAVERIRPR 328


>gi|308062033|gb|ADO03921.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Cuz20]
          Length = 310

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQKIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                         ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|242309935|ref|ZP_04809090.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT
           98-5489]
 gi|239523232|gb|EEQ63098.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT
           98-5489]
          Length = 311

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 163/311 (52%), Gaps = 14/311 (4%)

Query: 16  TIGDHVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
               H+ VL ++V+      L    G +++D T G GG+S +  +    +  I +D+D  
Sbjct: 1   MNPPHISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDND 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           A++   + + ++K++FS+    FS+        ++ + G++ D+GVSSMQ D  +RGFSF
Sbjct: 61  AIALATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +              +A D++N  ++ +L RI    GE ++  ++AH I++ R+     +
Sbjct: 121 ESETLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITS 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG-LLI 246
            + LS  I +     K+ +IHPAT +FQALRI VNNE+ EL + L+  E      G  L 
Sbjct: 181 AKMLSEFIAR---HFKHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLC 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++SFHSLEDR++K +F       +  +   +     +    +++ KK +    +++  N 
Sbjct: 238 IISFHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENP 297

Query: 305 RSRSAKLRAGM 315
           RSRSAKLRA  
Sbjct: 298 RSRSAKLRAFE 308


>gi|154174311|ref|YP_001408418.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92]
 gi|263445746|sp|A7GYX6|RSMH_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112802943|gb|EAU00287.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 10/307 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73
               H+ VLL++V+   +       +D T G GG+S +  +      +IA D+D  A+  
Sbjct: 1   MQSPHISVLLDEVLDAFHGLS-GTFIDCTLGYGGHSGALLEQNKNLRLIACDKDDEAIEF 59

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ + ++ ++  ++++ FSQL   +    +     ++ D+GVSS+Q+D  +RGFS    
Sbjct: 60  SKKRLENFGDRVKIYKSDFSQLIKVLSTDELKNVRGILADIGVSSLQLDKNERGFSINSD 119

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
                       SA+DV+N  + ++L  I    GE   A  +A  IV  R      + ++
Sbjct: 120 TLDMRMDRACEFSAADVINSYSQQNLAEIFSKYGELSNAKALAAKIVSARNLKKITSAKE 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+S+I           + PA  +FQA+R+ VN+E+ EL + L S + A      + ++SF
Sbjct: 180 LASIIG--TGRVNGRSVSPAILAFQAIRVEVNDELGELNRLLESIKSANLKECKVAIISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F S +   +   +          A+ + +TKK +V +Q+++A N RS S
Sbjct: 238 HSLEDRIVKNTFKSWAQSCICPPNAMRCKCGNDHAIGKILTKKAIVASQKEIAANPRSSS 297

Query: 309 AKLRAGM 315
           AK+R   
Sbjct: 298 AKMRVFE 304


>gi|295130325|ref|YP_003580988.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137]
 gi|291376254|gb|ADE00109.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137]
 gi|313764743|gb|EFS36107.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL013PA1]
 gi|313791793|gb|EFS39904.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL110PA1]
 gi|313802120|gb|EFS43352.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL110PA2]
 gi|313807237|gb|EFS45724.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA2]
 gi|313809743|gb|EFS47464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL083PA1]
 gi|313813215|gb|EFS50929.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL025PA1]
 gi|313815808|gb|EFS53522.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL059PA1]
 gi|313818283|gb|EFS55997.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL046PA2]
 gi|313820045|gb|EFS57759.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA1]
 gi|313823146|gb|EFS60860.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA2]
 gi|313825577|gb|EFS63291.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL063PA1]
 gi|313827816|gb|EFS65530.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL063PA2]
 gi|313838452|gb|EFS76166.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL086PA1]
 gi|314915234|gb|EFS79065.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA4]
 gi|314918537|gb|EFS82368.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL050PA1]
 gi|314919800|gb|EFS83631.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL050PA3]
 gi|314925467|gb|EFS89298.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA3]
 gi|314931815|gb|EFS95646.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL067PA1]
 gi|314955971|gb|EFT00369.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL027PA1]
 gi|314958366|gb|EFT02469.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA1]
 gi|314960282|gb|EFT04384.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA2]
 gi|314963091|gb|EFT07191.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL082PA1]
 gi|314978268|gb|EFT22362.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL072PA2]
 gi|314987732|gb|EFT31823.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA2]
 gi|314990211|gb|EFT34302.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA3]
 gi|315077555|gb|EFT49613.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL053PA2]
 gi|315080339|gb|EFT52315.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL078PA1]
 gi|315084598|gb|EFT56574.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL027PA2]
 gi|315085934|gb|EFT57910.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA3]
 gi|315088648|gb|EFT60624.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL072PA1]
 gi|315098257|gb|EFT70233.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL059PA2]
 gi|315101052|gb|EFT73028.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL046PA1]
 gi|315108244|gb|EFT80220.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL030PA2]
 gi|327332217|gb|EGE73954.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL096PA3]
 gi|327442839|gb|EGE89493.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL013PA2]
 gi|327451061|gb|EGE97715.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA3]
 gi|327452857|gb|EGE99511.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL092PA1]
 gi|327453584|gb|EGF00239.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL083PA2]
 gi|328753094|gb|EGF66710.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA1]
 gi|328753749|gb|EGF67365.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL020PA1]
 gi|328759161|gb|EGF72777.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL025PA2]
 gi|332675167|gb|AEE71983.1| ribosomal RNA small subunit methyltransferase H [Propionibacterium
           acnes 266]
          Length = 337

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62
            M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++
Sbjct: 2   LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID
Sbjct: 62  GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV 
Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P 
Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++VA N RS SA+LR   R 
Sbjct: 302 ADEVATNPRSASARLRVIERV 322


>gi|217032718|ref|ZP_03438203.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128]
 gi|298736407|ref|YP_003728933.1| S-adenosyl-methyltransferase [Helicobacter pylori B8]
 gi|216945592|gb|EEC24245.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128]
 gi|298355597|emb|CBI66469.1| S-adenosyl-methyltransferase [Helicobacter pylori B8]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHTLDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFRD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VNNE+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNNELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F + +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKNYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|308182803|ref|YP_003926930.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4]
 gi|308064988|gb|ADO06880.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                         ++A  V+N   +  L +I    GE ++  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPIVALEKIFKDYGEIREYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNSFKDYAKNCVCDPLSFKCTCSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|118468497|ref|YP_888512.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2
           155]
 gi|262825134|sp|A0R024|RSMH_MYCS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118169784|gb|ABK70680.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2
           155]
          Length = 326

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 179/313 (57%), Gaps = 15/313 (4%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H+PVLL++ + LL PA     P     V++DAT GAGG+S  F        +I LDRDP 
Sbjct: 9   HIPVLLDRCVELLAPALTRTDPDGTEAVLVDATLGAGGHSERFLTDFPALRLIGLDRDPN 68

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   + +  + ++ +L +  +  +   + +   + +DGV+FDLGVSSMQ+D   RGFS
Sbjct: 69  ALAIAGDRLAPFGDRVTLVRTRYDGITSALAEAGVRRIDGVLFDLGVSSMQLDQKQRGFS 128

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM    + +A+++VN  + K LTRIL   GEE+ A RIA  IV+RR   PF
Sbjct: 129 YSADAPLDMRMDPDALLTAAEIVNTYDAKTLTRILRDYGEERFAGRIADKIVRRRAKQPF 188

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L  L+ + +    +    HPA R+FQALRI VN E++ L   + +A  AL+ GG 
Sbjct: 189 TTTSELVELLYEAIPAPARRTGGHPAKRTFQALRIAVNAELDSLRAAIPAALAALRPGGR 248

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+++ SLEDR+VK+ F++ +         +    H   F ++T+      ++++  N 
Sbjct: 249 IVVMAYQSLEDRIVKQAFSTVTASRTPPGLPMELPGHEPEFVAVTRGAERADEQEIERNP 308

Query: 305 RSRSAKLRAGMRT 317
           RS   +LRA  + 
Sbjct: 309 RSAPVRLRALEKV 321


>gi|330826599|ref|YP_004389902.1| ribosomal RNA small subunit methyltransferase H [Alicycliphilus
           denitrificans K601]
 gi|329311971|gb|AEB86386.1| Ribosomal RNA small subunit methyltransferase H [Alicycliphilus
           denitrificans K601]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 158/309 (51%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VL  + +  L     AP    +D TFG GG++R   +       ++A D+DP A+  
Sbjct: 7   HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIHE 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +  +FS+    FS L +      V GV+ DLG+SS QID   RGFSF+  GPL
Sbjct: 67  AARI---HDARFSIQHQGFSHLGELPAA-SVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G S ++ +  A    +  ++   GEE+ A  IA AIV RR            
Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I      ++    +PATR+FQA RIF+N E+EEL Q L ++   L  GG L+V+SFHS
Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F A  S + M  R    +   P   +++ +  V P+  +V  N R+RSA +R
Sbjct: 243 LEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVMR 299

Query: 313 AGMRTVERS 321
              RT   +
Sbjct: 300 VAERTEVPA 308


>gi|184201136|ref|YP_001855343.1| S-adenosyl-methyltransferase MraW [Kocuria rhizophila DC2201]
 gi|263456204|sp|B2GJQ6|RSMH_KOCRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183581366|dbj|BAG29837.1| methyltransferase MraW [Kocuria rhizophila DC2201]
          Length = 327

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 177/321 (55%), Gaps = 12/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IA 63
           M  A       HVPVLL++ + LL PA      V+LDAT G GG++ +  +   ++  + 
Sbjct: 1   MEEA--PAEQRHVPVLLDRCLDLLAPALDTEAPVVLDATLGMGGHTHAMLERFPHLRVVG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120
           +DRDP A+      ++ +  +F+    T+  + D         VDGV+FDLGVSS+Q+D 
Sbjct: 59  IDRDPQALELAGRRLQRFGSRFASIHTTYDHIADAAAAAGVERVDGVLFDLGVSSLQLDE 118

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGF++    PLDMRM     +SA  VVN+ +   L  I+   GE++ A RIA AIV  
Sbjct: 119 RERGFAYSFDAPLDMRMDSRAELSAYTVVNEYSEARLRDIIFRWGEDRFAPRIARAIVAA 178

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R  AP +TT  L   ++  V  + ++ + HPA ++FQALRI VN E++ L + + +A + 
Sbjct: 179 RADAPLRTTAQLVDAVRSAVPAAAQHKKGHPAKQTFQALRIEVNEELDVLERAIPAAVET 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           ++ GG +I +S+HSLEDR+VK+ FA  +         +    H  V + +T+      ++
Sbjct: 239 VRVGGRVIAMSYHSLEDRIVKQEFARGARSTAPRGFPVELPEHQPVLKVLTRGAERADEQ 298

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +   N R+ SA+LRA  R  E
Sbjct: 299 ETLENPRAASARLRAVERLRE 319


>gi|168702508|ref|ZP_02734785.1| methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 293

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 163/305 (53%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VL  + +ALL+P P +  +D T G  G++R   +       V+ALD+DP  ++  + 
Sbjct: 9   HVSVLPAETLALLDPRPDETWVDCTTGGAGHTRLIAERVGPAGRVLALDQDPTMLALARP 68

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +        L  A F QL +         VDGV+ DLG SS Q+    RG SF+  GPL
Sbjct: 69  LVAGLP--VELVHANFDQLAEVLAARGIAAVDGVLADLGFSSDQLAERARGLSFRDDGPL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+  + G +A+D+VN  +   L  +    GEE+ + R+A  IV RR   PF TT DL+
Sbjct: 127 DMRLDPTSGSTAADMVNSLSEGALADVFWEYGEERHSRRVAKKIVARRAERPFATTADLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  V   ++  I PATR FQALRI VN+E+  L + L      +K+GG + ++SFHS
Sbjct: 187 SVVRSCVP--RSGSIDPATRVFQALRIAVNDELGSLDRLLAVLPTVVKSGGRVGIISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK    +                   V++ +TKK V    E+VA N R+RSAKLR
Sbjct: 245 LEDRRVKHVLRT-----------------EGVWRPLTKKPVEAGDEEVARNPRARSAKLR 287

Query: 313 AGMRT 317
           A  R 
Sbjct: 288 AATRI 292


>gi|197294245|ref|YP_001798786.1| S-adenosyl-methyltransferase MraW [Candidatus Phytoplasma
           australiense]
 gi|262824821|sp|B1V910|RSMH_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171853572|emb|CAM11442.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma australiense]
          Length = 303

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 164/304 (53%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+ VL E+ I+ LN  P  V +DAT G GG++ S         + + D+D  A S  Q+ 
Sbjct: 5   HISVLKEEAISFLNINPNGVYVDATLGQGGHTLSILNHLQDGFLYSFDQDLKACSDIQKK 64

Query: 78  MRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +        +  + FS L+          +DG++FDLG+SS QID   RGFS+  + PLD
Sbjct: 65  LNP-NWPIEIIHSNFSNLKLELAKRNVFQLDGILFDLGISSCQIDDSQRGFSYLHNAPLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR       +A ++VN  + + L  I  I GEEK+A+ IA  I    ++ P +T+ DL +
Sbjct: 124 MRFDNRQKLTAQEIVNFYSFEKLKNIFHIYGEEKKAALIAKQI---IKNRPLKTSYDLVA 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +      F K ++ H A + FQALRI VN E+E L Q L  + + LK  G ++V+SFHSL
Sbjct: 181 ITD---MFYKYHKGHSAKKIFQALRIEVNQELEVLKQALSQSLELLKKDGSIVVISFHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK FF   S      +  I   +      + ITKK  +P++ ++  N RS SAKLR
Sbjct: 238 EDRIVKHFFKKNSVFEFPKKLPIMSVDYPQPALRIITKKPCIPSEVEMKNNPRSISAKLR 297

Query: 313 AGMR 316
           A ++
Sbjct: 298 AAVK 301


>gi|160872354|ref|ZP_02062486.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli]
 gi|159121153|gb|EDP46491.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli]
          Length = 312

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 13/314 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H PVLL +VI  L      + +DATFG GG++    +        IA+D+DP A+
Sbjct: 2   QKQEQHQPVLLTEVIENLVLDKDGIYVDATFGRGGHAGQILQRLSDKGRCIAIDKDPAAM 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           + G +    + ++F ++Q +FSQL+           V G++FDLGVSS Q++  +RGFSF
Sbjct: 62  AFGIQQW-GHDKRFKIYQGSFSQLKTMAEREGVINKVSGILFDLGVSSPQLEKAERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM   +GISA++ +  A  K++ ++L   GEE+ A RIA AIV+ ++  P  
Sbjct: 121 LREGPLDMRMDPLTGISAAEWLAHAKEKEIVKVLKNYGEERYAKRIARAIVEEQKLRPIV 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+++++         + HPATR+FQA+RI +NNE+E+L   L  +   LK GG L+
Sbjct: 181 TTVQLANVVKLAHPHWDRFK-HPATRTFQAIRIQINNELEDLNVSLGQSIDVLKQGGRLL 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLEDR+VK+F    + + + ++ +   P+       + I +  V P    +  N 
Sbjct: 240 VISFHSLEDRIVKRFIHQHAHEAVELKKLPFMPAEWKRPRLKKIGRG-VKPDAYAIKTNP 298

Query: 305 RSRSAKLRAGMRTV 318
           RSRSA LR   +  
Sbjct: 299 RSRSALLRIAEKIA 312


>gi|325283143|ref|YP_004255684.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           proteolyticus MRP]
 gi|324314952|gb|ADY26067.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           proteolyticus MRP]
          Length = 299

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 179/311 (57%), Gaps = 24/311 (7%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
           T  +  H     H+PVL ++V+  L PAPG++I+D T G  G++R   + G+ VI +D+D
Sbjct: 2   TQEAVPHTPTLSHLPVLPQEVMDALAPAPGRLIVDGTLGGAGHTRMLLERGATVIGIDQD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRG 124
           P+A+S  +    +        +  F  +Q     +    VDG++ D+GVSS Q+D  +RG
Sbjct: 62  PYALSRVE---AEGLAGLRTVRGNFRDMQTLLAGIGVTQVDGILLDIGVSSFQLDDVERG 118

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS+     LDMRMS SG SA+D+VN     +L  ++   GEEK + R+A AIV  RQSAP
Sbjct: 119 FSYHSEAALDMRMSQSGPSAADLVNDLEEAELAALIYEYGEEKHSRRLARAIVAARQSAP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TT +L+ +I++         IHPA R+FQALRI VN+E+  L +GL++AE  L  GG 
Sbjct: 179 IETTTELADIIKRAYPGFVRG-IHPARRTFQALRIAVNDELGALREGLQAAEALLAPGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDR+VK+F                        + +TK+  V ++E+ A N 
Sbjct: 238 LGVISFHSLEDRIVKRFLLGSE-----------------RLRPLTKRPAVASEEEQAANP 280

Query: 305 RSRSAKLRAGM 315
           RSRSAKLR+  
Sbjct: 281 RSRSAKLRSAE 291


>gi|317014121|gb|ADU81557.1| 16S rRNA m(4)C1402 methyltranserfase [Helicobacter pylori
           Gambia94/24]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ ++ L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYHLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH IV+RR   PF+ 
Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIVERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|313772507|gb|EFS38473.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL074PA1]
 gi|313830652|gb|EFS68366.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL007PA1]
 gi|313833872|gb|EFS71586.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL056PA1]
 gi|314973654|gb|EFT17750.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL053PA1]
 gi|314976247|gb|EFT20342.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL045PA1]
 gi|314983544|gb|EFT27636.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA1]
 gi|315096274|gb|EFT68250.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL038PA1]
 gi|327325910|gb|EGE67700.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL096PA2]
 gi|327446210|gb|EGE92864.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL043PA2]
 gi|327447807|gb|EGE94461.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL043PA1]
 gi|328760593|gb|EGF74161.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL099PA1]
          Length = 337

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 167/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62
            M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++
Sbjct: 2   LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID
Sbjct: 62  GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV 
Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I   +     +    HPA R+FQALRI VN E+E L   L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITGAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P 
Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++VA N RS SA+LR   R 
Sbjct: 302 ADEVATNPRSASARLRVIERV 322


>gi|319764380|ref|YP_004128317.1| s-adenosyl-methyltransferase mraw [Alicycliphilus denitrificans BC]
 gi|317118941|gb|ADV01430.1| S-adenosyl-methyltransferase MraW [Alicycliphilus denitrificans BC]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 158/309 (51%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VL  + +  L     AP    +D TFG GG++R   +       ++A D+DP A+  
Sbjct: 7   HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIHE 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +  +FS+    FS L +      V GV+ DLG+SS QID   RGFSF+  GPL
Sbjct: 67  AARI---HDARFSIRHQGFSHLGELPAA-SVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G S ++ +  A    +  ++   GEE+ A  IA AIV RR            
Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I      ++    +PATR+FQA RIF+N E+EEL Q L ++   L  GG L+V+SFHS
Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F A  S + M  R    +   P   +++ +  V P+  +V  N R+RSA +R
Sbjct: 243 LEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVMR 299

Query: 313 AGMRTVERS 321
              RT   +
Sbjct: 300 VAERTEVPA 308


>gi|332527095|ref|ZP_08403175.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111526|gb|EGJ11508.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus
           JA2]
          Length = 313

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 177/321 (55%), Gaps = 16/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++ +  T   H  VLL + +  L      + +D TFG GG++R+     S    V+A D
Sbjct: 1   MTA-VTQTGRAHTTVLLAEAVEALVTQADGLYVDGTFGRGGHTRALLAALSPRARVLAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
           RDP               +F++  A+F  +++ +  +    V GV+ DLGVSS QID  +
Sbjct: 60  RDPE---AIAAAAAIDDPRFTICHASFGAMREELAARGVGQVQGVLLDLGVSSPQIDTPE 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G +A+D + +A+ + + +++   GEE+ A +IA A+V RRQ
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGETAADFLARADERHIAQVIRDYGEERFALQIAKAVVARRQ 176

Query: 182 -SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                +TT +LS+L+ + V   +  +  PATR+FQALRIFVN E+E L QGL +A + L 
Sbjct: 177 GGDQLRTTGELSALVARAVKTREPGQ-DPATRTFQALRIFVNAELEALEQGLSAALQLLA 235

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L+V+SFHSLEDR+VK F    S      R    +       +++ +  V P  ++V
Sbjct: 236 PGGRLVVISFHSLEDRIVKNFITRESRD-EFDRRAPMAPPRALKLKALAR--VKPGDDEV 292

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N R+RSA +R   RT   +
Sbjct: 293 RANPRARSAVMRVAERTEVPA 313


>gi|314968074|gb|EFT12173.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA1]
          Length = 337

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62
            M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++
Sbjct: 2   LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID
Sbjct: 62  GIDRDQQALTMAEARLEPFADRVHLVHAVHDELLEVLDDLGLDYVDSVLLDLGLSSFQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV 
Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P 
Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++VA N RS SA+LR   R 
Sbjct: 302 ADEVATNPRSASARLRVIERV 322


>gi|208434621|ref|YP_002266287.1| hypothetical protein HPG27_664 [Helicobacter pylori G27]
 gi|226709921|sp|B5Z772|RSMH_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|208432550|gb|ACI27421.1| hypothetical protein HPG27_664 [Helicobacter pylori G27]
          Length = 308

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLVDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++      +   D +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALEIHGDRIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLNGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPLSFQCTCSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|57236996|ref|YP_178797.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221]
 gi|68565428|sp|Q5HV88|RSMH_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57165800|gb|AAW34579.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221]
 gi|315058156|gb|ADT72485.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 310

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|114799717|ref|YP_761709.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444]
 gi|123128411|sp|Q0BXT4|RSMH_HYPNA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114739891|gb|ABI78016.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444]
          Length = 342

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 140/344 (40%), Positives = 197/344 (57%), Gaps = 27/344 (7%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---------SFCKM-GSNVIA 63
                 H+PV+L +V+  L PA G+VI+D                   +  K     V+ 
Sbjct: 9   SPAEPGHLPVMLAEVLTALAPADGEVIVD---------GTFGGGGYTTAILKAANCTVLG 59

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120
           +DRD  A+   ++       +       F  L           VDGVV D+GVSS QID 
Sbjct: 60  IDRDLDAIVRAEKM-AQANPRLVPLLGCFGDLDTLAEQAGHASVDGVVLDIGVSSFQIDQ 118

Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            DRGFSF K GPLDMRM  SG SA+DVVN  + K L  ++  LGEEK + RIA  +V+RR
Sbjct: 119 ADRGFSFMKDGPLDMRMGGSGPSAADVVNTMSEKGLADVIFRLGEEKNSRRIARVLVQRR 178

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             APF+TT DL++++++ V   +  R HPAT +FQA+R++VN+E+ ELA+GLR+AE+ LK
Sbjct: 179 VQAPFETTADLAAVVEEAVGGRRGARSHPATLTFQAIRMYVNDELGELARGLRAAERILK 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQE 298
            GG L+VV+FHSLEDRLVK++   R+G V      +P  S      F+    K V P+++
Sbjct: 239 PGGRLVVVTFHSLEDRLVKQWLRERAGAVPGGSRHMPLMSKGPAPAFELQENKAVQPSEK 298

Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSF--VHLPRLPTLSQFR 340
           +V  N R+RSAKLRA +RT   +  D++   ++LP L  L + R
Sbjct: 299 EVETNPRARSAKLRAAIRTNADAALDEASDGMNLPPLAELEKSR 342


>gi|237743305|ref|ZP_04573786.1| methyltransferase [Fusobacterium sp. 7_1]
 gi|229433084|gb|EEO43296.1| methyltransferase [Fusobacterium sp. 7_1]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYTAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA D+VN    + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|225375622|ref|ZP_03752843.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM
           16841]
 gi|225212601|gb|EEG94955.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM
           16841]
          Length = 312

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 162/312 (51%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
              +H  VLL + I  LN  P  + +D T G GG++            +I +D+D  A++
Sbjct: 1   MEFNHYSVLLNETIENLNIKPDGIYVDGTLGGGGHAYQVASRLSEKGRLIGIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++++ ++ ++ ++ ++ +++ +       VDG+V DLGVSS Q+D  +RGF+++ 
Sbjct: 61  AAGERLKEFGDKITIIRSNYANMKEELHRIGVEKVDGIVLDLGVSSFQLDTLERGFTYRD 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                         ++A D+VN  +  DL RI+   GE+K A  IA  IV+ R   P +T
Sbjct: 121 ENAPLDMRMDDRQSLTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVQERAKKPIET 180

Query: 188 TQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+ +I+ ++         HPA R+FQA+RI +N E+E L   L      L  GG + 
Sbjct: 181 TGELTEIIRASIPMKVQVTGGHPAKRTFQAIRIELNKELEVLQNNLDDMIDLLNPGGRIC 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK  F                     +  + +T+K ++P++E++  N R
Sbjct: 241 IITFHSLEDRIVKTNFKRNENPCTCPSDFPVCVCGKKSKGKVVTRKPILPSEEELEVNSR 300

Query: 306 SRSAKLRAGMRT 317
           S+SAKLR   R 
Sbjct: 301 SKSAKLRVFERV 312


>gi|21672500|ref|NP_660567.1| hypothetical protein BUsg218 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|8134808|sp|O85295|RSMH_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3435166|gb|AAC32335.1| hypothetical protein [Buchnera aphidicola]
 gi|21623120|gb|AAM67778.1| hypothetical 36.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 312

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 16/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           ++ TI  H+ V+ +++I  L      + +D TFG GG++ S  K       + A+DRDP 
Sbjct: 1   MNQTI-KHISVMKKELIESLKIKKNGIYIDGTFGMGGHALSILKTIGREGRLYAIDRDPN 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125
           +V  G +      ++F +  + FS++ +Y     +    +G++FDLG SS+QI+   RGF
Sbjct: 60  SVFIGNQIK---DKRFHIIHSNFSKILNYAKYNNIIGKVNGILFDLGTSSLQIENEKRGF 116

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+K+GPLDMRM+   GISAS+ + ++++  +  +L   GEE+ + RIA+AI    +   
Sbjct: 117 SFKKNGPLDMRMNPHAGISASEWLFKSDINKIYFVLKNFGEERFSKRIAYAIKDYCKKKK 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T +L  +I+K     KN   HPA R+FQA+RI++N E+EE+ +GL ++ K LK GG 
Sbjct: 177 INNTFELVDIIKKAT-PIKNKFKHPAKRTFQAIRIYINQELEEIKKGLENSLKILKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVA 301
           L ++SFHSLEDR+VK F    S K      +  +       +    K+   + PTQ+++ 
Sbjct: 236 LSIISFHSLEDRIVKNFMMKYSKKATVPYGLPITENKLETLRICKLKIINRIFPTQKEIE 295

Query: 302 FNRRSRSAKLRAGM 315
            N R+RS+ LR   
Sbjct: 296 KNPRARSSVLRTAE 309


>gi|210134911|ref|YP_002301350.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori P12]
 gi|226709920|sp|B6JLU2|RSMH_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|210132879|gb|ACJ07870.1| S-adenosyl-methyltransferase [Helicobacter pylori P12]
          Length = 308

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALEMHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK ++P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGTILTKKPIIPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|148926658|ref|ZP_01810339.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845177|gb|EDK22272.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 312

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 6   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 65

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 66  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 125

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 185

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 186 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 243

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 244 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 303

Query: 314 G 314
            
Sbjct: 304 F 304


>gi|163841237|ref|YP_001625642.1| S-adenosyl-methyltransferase MraW [Renibacterium salmoninarum ATCC
           33209]
 gi|162954713|gb|ABY24228.1| S-adenosyl-methyltransferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 382

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 15/320 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALD 65
               HVPVL ++ + LL PA           V++DAT G GG+S +        ++I +D
Sbjct: 60  DAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENLHLIGID 119

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           RD  A+      ++ ++++  L  A + ++ + + D   + +DGV+ DLGVSS+Q+D  +
Sbjct: 120 RDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSLQLDEAE 179

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++    PLDMRM    G SA+DVVN  +  +L  I+   GEEK A RIA+ IV  R 
Sbjct: 180 RGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANRIVAARA 239

Query: 182 SAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF  T +L  +I+K V  +      HPA R+FQALRI VN E+  L + + +A  AL 
Sbjct: 240 EKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPAAVDALA 299

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG  +V+S+HSLED++VKKFF++           +  ++     +++TK   VPT+ ++
Sbjct: 300 IGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEVPTEAEI 359

Query: 301 AFNRRSRSAKLRAGMRTVER 320
           A N R+ SA+LRA  R   R
Sbjct: 360 AENPRAASARLRAVERIRPR 379


>gi|15645330|ref|NP_207501.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 26695]
 gi|8134812|sp|O25411|RSMH_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2313835|gb|AAD07761.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 308

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFMPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHTLDMRMDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKN 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|315926807|gb|EFV06181.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 310

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|42559428|sp|P60399|RSMH_SPIKU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|37781879|gb|AAP42766.1| putative S-adenosylmethionine-dependent methyltransferase
           [Spiroplasma kunkelii CR2-3x]
          Length = 313

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL++ I+ LN     + +D T G  G+S    K      +   ++D  A+  
Sbjct: 1   MEFKHQTVLLQEAISGLNVQNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIVV 60

Query: 74  GQETMRDYKE-QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E ++  K   + + +  F  L         K V+G+++DLGVSS Q+D   RGFS++ 
Sbjct: 61  SEEILQKSKYRNYEIIKNNFVNLAAELQLRNVKAVNGILYDLGVSSPQLDDDKRGFSYRY 120

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G++A  VVN  + + L ++    GEE  A  IA  IV  R      TT
Sbjct: 121 DSPLDMRMNQHQGLTAKTVVNTYSQEALVKLFQDYGEEPFAKVIAKTIVIARNEQEIVTT 180

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+K++      +  HPA R FQALRI VN E+  L + LR A   L   G L+V
Sbjct: 181 FHLVEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLRQATTLLAVHGRLVV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VKK+F S +        + +   +   + +  ITKKV+V +  +   N R
Sbjct: 241 ISFHSLEDRIVKKYFQSLTKDPNYEINQQLPAISYFESDYHIITKKVIVSSVTEQTNNHR 300

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   R  
Sbjct: 301 SRSAKLRILERVK 313


>gi|323486709|ref|ZP_08092030.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum
           WAL-14163]
 gi|323400090|gb|EGA92467.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum
           WAL-14163]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++   E
Sbjct: 5   HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++ ++ ++ ++ +  + + + +     VDG+  DLGVSS Q+D  +RGF++++    
Sbjct: 65  RLKEFGDKVTIVRSNYENIDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                   + ++A D+VN  +  +L  I+   GE++ A  IA  IV+ RQ    +TT +L
Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI +N E+E L   +      L  GG L +++F
Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLENSIDKMTDLLAPGGRLSIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F                     +  + +T+K ++P++E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304

Query: 310 KLRAGMRT 317
           KLR   ++
Sbjct: 305 KLRVFEKS 312


>gi|289426145|ref|ZP_06427891.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187]
 gi|289153310|gb|EFD02025.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187]
          Length = 337

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62
            M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++
Sbjct: 2   LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID
Sbjct: 62  GIDRDQQALTMAEARLESFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV 
Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P 
Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++VA N RS SA+LR   R 
Sbjct: 302 ADEVATNPRSASARLRVIERV 322


>gi|317124641|ref|YP_004098753.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM
           43043]
 gi|315588729|gb|ADU48026.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM
           43043]
          Length = 371

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 10/315 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
                HVP++ ++++ LL PA   PG V +D T G GG++        G  VI +DRD  
Sbjct: 6   PAHERHVPIMRDRILDLLAPALSTPGAVHVDGTLGMGGHAEGVLSRFPGCRVIGVDRDRE 65

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   E +  + ++F    AT  +L   + D   + VDG+VFDLGVSS+Q+D  DRGF+
Sbjct: 66  ALTLAGERLAGFGDRFLPVHATNDELARVLLDSGLQHVDGIVFDLGVSSLQLDEEDRGFA 125

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++   PLDMRM    G +A+DV+N  +V+D+TRIL   GEE+ A +IA AIV+ R+  PF
Sbjct: 126 YRVDAPLDMRMDQTRGQTAADVLNTYSVEDVTRILREYGEERFARKIAVAIVREREDEPF 185

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            T+  L  L+++ +   S+    HPA R+FQALRI VN+E+    + + +A   L  GG 
Sbjct: 186 ATSGRLVELLRRVIPVASQRQSGHPAKRTFQALRIEVNDELGGWERAVAAAIDVLAVGGR 245

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + V+SFHSLEDRL K+ FA  +         +    H    +++T+    P   +V  N 
Sbjct: 246 MAVLSFHSLEDRLTKRAFALGATSSAPRGLPVELPHHAPYLRALTRGAEEPDDAEVLANP 305

Query: 305 RSRSAKLRAGMRTVE 319
           R+ SAKLRA  R  +
Sbjct: 306 RAASAKLRAVERVRD 320


>gi|331696613|ref|YP_004332852.1| ribosomal RNA small subunit methyltransferase H [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951302|gb|AEA24999.1| Ribosomal RNA small subunit methyltransferase H [Pseudonocardia
           dioxanivorans CB1190]
          Length = 326

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 120/317 (37%), Positives = 178/317 (56%), Gaps = 10/317 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
                HVPVLL +V+ LL PA      V++DAT G GG+S +       +  + LDRDP 
Sbjct: 10  PAGARHVPVLLPRVLELLGPALAGRPAVVVDATLGLGGHSAALLAAHPELTLVGLDRDPQ 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  + ++  L  A + ++ D + +    G DGV+FDLGVSS+Q+D  +RGFS
Sbjct: 70  ALELAGRRLVAFADRTHLVHAVYDRIADVLAELGLPGADGVLFDLGVSSLQLDADERGFS 129

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + +   LDMRM  + G +A+DV+N   V +L RIL   GEE+ A RIA AI + R   PF
Sbjct: 130 YSRDADLDMRMDPTTGPTAADVLNTYAVPELARILREYGEERFAGRIAAAIGRARDRRPF 189

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             + +L  L+ +TV   S+    HPA R+FQALRI VN E++ L   + +A  +L  GG 
Sbjct: 190 TRSSELVELLYETVPAASRRTGGHPAKRTFQALRIEVNGELDALRAAVPAAIDSLTVGGR 249

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+S+HSLEDRLVK+  A+RS         +    H    + + +     ++E+V  N 
Sbjct: 250 IVVLSYHSLEDRLVKRELAARSVSTTPQDLPVELPGHGPELRLLVRGSQQASEEEVGENP 309

Query: 305 RSRSAKLRAGMRTVERS 321
           R+ S +LRA  R  E +
Sbjct: 310 RAASVRLRAAERIREAA 326


>gi|86149768|ref|ZP_01067997.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596954|ref|ZP_01100190.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85839586|gb|EAQ56846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190643|gb|EAQ94616.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284925949|gb|ADC28301.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315929134|gb|EFV08361.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 310

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|108563117|ref|YP_627433.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPAG1]
 gi|122980507|sp|Q1CTG3|RSMH_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|107836890|gb|ABF84759.1| hypothetical protein HPAG1_0692 [Helicobacter pylori HPAG1]
          Length = 308

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHTLDMRMDLKSDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFQCTCSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|85058419|ref|YP_454121.1| S-adenosyl-methyltransferase MraW [Sodalis glossinidius str.
           'morsitans']
 gi|123520087|sp|Q2NVV9|RSMH_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|84778939|dbj|BAE73716.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 315

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  V LD TFG GG+SR           + A+DRDP   +  + 
Sbjct: 7   HTTVLLDEAVKGLNLRPDSVYLDGTFGRGGHSRLILSKLGAQGRLFAIDRDP---AAIEA 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y+  +     VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 64  ARAIEDARFAIIHGPFSAMAEYMAQRDLLGKVDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA+  + QA+ +D+  +L   GEE+ A RIA AIV   +  P   T++L
Sbjct: 124 LDMRMDTTRGQSAAQWLAQASAEDIAWVLKTFGEERFAKRIAQAIVAHNRQQPMTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI       ++   HPATRSFQA+RI++N+E+EE+ + L  A   L  GG L V+SFH
Sbjct: 184 AALIADA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDRLVK+F    S        +  + A                K + P+  +++ N R
Sbjct: 243 SLEDRLVKQFIRQHSRGPQVPAGLPLTEAQIAAQYQDQRLLKAAGK-MQPSAREISDNPR 301

Query: 306 SRSAKLRAGMRTV 318
           +RS+ LR   +  
Sbjct: 302 ARSSVLRFAEKLA 314


>gi|126435853|ref|YP_001071544.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS]
 gi|262825143|sp|A3Q1M6|RSMH_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126235653|gb|ABN99053.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS]
          Length = 324

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 18/318 (5%)

Query: 19  DHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +H+PVLL++ + LL P      P     V++DAT GAGG++  F       ++I LDRDP
Sbjct: 2   EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++ SL +  +  + D +       V G +FDLGVSSMQ+D  +RGF
Sbjct: 62  QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM     ++A+DVVN    KD+TRIL   GEE+ A+RIA  IV+RR   P
Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT +L  L+   +    +    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAIPAALGALETGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK  FA+ +         +    H   F ++T+     T E++  N
Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298

Query: 304 RRSRSAKLRAGMRTVERS 321
            RS   +LRA  +   R 
Sbjct: 299 PRSAPVRLRALEKVAGRP 316


>gi|229820904|ref|YP_002882430.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333]
 gi|263447254|sp|C5BW67|RSMH_BEUC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229566817|gb|ACQ80668.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333]
          Length = 333

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 117/319 (36%), Positives = 175/319 (54%), Gaps = 10/319 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63
           MS+        H PVL ++ + LL PA    G V++DAT G GG+S    +    + V+ 
Sbjct: 1   MSTPDAQAAALHAPVLAQRCVDLLAPALESDGAVLVDATLGMGGHSELVLEQCPHARVLG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRDP A+      +  + ++F+   A + ++ D         V GV+FDLGVSS+Q+D 
Sbjct: 61  IDRDPRALELATARLARFGQRFTPVHAVYDEIDDVARQHAGGAVQGVLFDLGVSSLQLDD 120

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGF++ +  PLDMRM  + G +A+D++  A+  +L RIL   GEEK A RIA AIV+R
Sbjct: 121 AGRGFAYAQDAPLDMRMDPTTGPTAADLLADADEAELRRILRTYGEEKFAPRIAAAIVRR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R++AP + + DL  +++  +  S +    HPA R+FQALRI VN E+E L + L  A  A
Sbjct: 181 REAAPLRRSSDLVEVVRGAIPMSAQRTGGHPAKRTFQALRIAVNRELEVLERALPRAIDA 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V S+HSLEDRLVK+  A  +         +         + +T         
Sbjct: 241 LAVGGRIVVESYHSLEDRLVKRELARGATSSAPRHLPVVPEEDQPYLELLTHGAEQADDV 300

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++A N R+ S +LRA  R 
Sbjct: 301 ELAANPRAASVRLRAARRI 319


>gi|28493187|ref|NP_787348.1| S-adenosyl-methyltransferase MraW [Tropheryma whipplei str. Twist]
 gi|28572698|ref|NP_789478.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27]
 gi|42559466|sp|Q83GN7|RSMH_TROWT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42559467|sp|Q83HJ6|RSMH_TROW8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28410830|emb|CAD67216.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476228|gb|AAO44317.1| unknown [Tropheryma whipplei str. Twist]
          Length = 317

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 117/319 (36%), Positives = 172/319 (53%), Gaps = 9/319 (2%)

Query: 17  IGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVS 72
           +  H+PV+L +V  L+ P    G V +DAT GAGG+S +      G+ +  +DRD +A++
Sbjct: 1   MNGHLPVMLGEVCQLIEPVLGIGDVFIDATLGAGGHSEAILMSSQGALLYGIDRDAYALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++ +  + ++      TF +   Y+ +      +FDLG+SSMQID  DRGFS+ KSGP
Sbjct: 61  LARKRLSGFADRCKFVHDTFDKFDKYLSNLHPKVFLFDLGMSSMQIDNPDRGFSYMKSGP 120

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S  I+A +++N  +   L RI    G+E+ A RIA  I K R  +   TT  +
Sbjct: 121 LDMRMNESDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARSVSELVTTCQV 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S LI+         + HPA R FQALRI VN+E+  L   L  A   L+ GG ++V+S+H
Sbjct: 181 SQLIRDVCPPHIR-KGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F S S   +     I        ++ I K +  P + ++A N R+ SA L
Sbjct: 240 SLEDRIVKHLFRSVSVSQLPKGFYI---NKDPEYKLIGKDLKNPKETEIANNPRASSAHL 296

Query: 312 RAGMRTVERSIEDDSFVHL 330
           RA  R    S  +   V  
Sbjct: 297 RAVERVHSHSQAEAQIVEP 315


>gi|158316863|ref|YP_001509371.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec]
 gi|263447093|sp|A8KZA9|RSMH_FRASN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158112268|gb|ABW14465.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec]
          Length = 327

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 181/313 (57%), Gaps = 10/313 (3%)

Query: 19  DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
            H PVL E+VI LL+P    PG V++DAT G GG+S +  +      +I LDRD  A+  
Sbjct: 4   THTPVLTERVIQLLDPALRRPGAVVVDATVGLGGHSHALLEAFPQVRLIGLDRDTTALEH 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +    ++  L  A + QL D +       VDGV+FDLGVSSMQ+D  +RGF++ + 
Sbjct: 64  SRRRLTGLGDRVDLEHAVYDQLPDVLDRLGVPSVDGVLFDLGVSSMQLDLDERGFAYSRD 123

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM    G +A+DV+N  +V  LTR+L   GEE+ A RIA A+V +RQ+APF T+ 
Sbjct: 124 APLDMRMDQERGPTAADVLNNYDVDALTRVLREYGEERFARRIARAVVTQRQAAPFTTSA 183

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  L++ ++  + +    +PA R+FQALRI VN+E+E L + + +A  AL   G L+V+
Sbjct: 184 RLVDLVRDSIPAAARRTGGNPAKRTFQALRIEVNSELEVLERAVPAAFDALAVAGRLVVL 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK+    RS   +     +  +      + +T+     +  ++  N R+ S
Sbjct: 244 SYHSLEDRLVKRVLMPRSVPSVPPDMPVIPDDARPTLRWLTRGAEPASDTEIEQNARAGS 303

Query: 309 AKLRAGMRTVERS 321
            +LRA  RT    
Sbjct: 304 VRLRAAERTAAEP 316


>gi|121613568|ref|YP_001000389.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005332|ref|ZP_02271090.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|263445762|sp|A1VZ48|RSMH_CAMJJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|87249530|gb|EAQ72490.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 310

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|307720766|ref|YP_003891906.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM
           16294]
 gi|306978859|gb|ADN08894.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM
           16294]
          Length = 308

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 13/302 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL ++VI         +++D T G GG+S    +      +IA+D+D  A+    +
Sbjct: 5   PHIPVLYKEVIEAFKDLKEGIVIDCTMGYGGHSSLLLEANQNIKLIAIDQDQTAIDFSSK 64

Query: 77  TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y E+ S+ +  FS    ++   V    + G++ D+GVSS+Q+D  +RGFS++    
Sbjct: 65  RLEKYGERVSIRKGRFSAVIKEILQEVNPNEIKGILADIGVSSLQLDQKERGFSYESDNL 124

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                  + ++AS+VVN+ +  +L RIL   GE +   +IA  IV+ R     +   +  
Sbjct: 125 DMRMDKDAQLNASNVVNEYSKTELERILLEYGELRNYKKIADVIVQNRPFVSAKELSEAV 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
                  + S+  +IHPAT   QA+RI VN+E+ EL   L+S E+A      + ++SFHS
Sbjct: 185 R-----PHMSRGKKIHPATLLMQAIRIEVNDELGELKSLLQSIEEAKLPEAKVAIISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VKK F+  S   +            +  + + +TKK ++  ++++  N RSRSAK
Sbjct: 240 LEDRIVKKEFSKWSKSCICPPEAFRCSCGNNHQLGKILTKKPIMAQEDELKENVRSRSAK 299

Query: 311 LR 312
           +R
Sbjct: 300 MR 301


>gi|300690333|ref|YP_003751328.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           PSI07]
 gi|299077393|emb|CBJ50018.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           PSI07]
          Length = 319

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 182/325 (56%), Gaps = 24/325 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++  + T   H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D
Sbjct: 1   MTTQAN-TGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +DP A++           +F++   +F+ L    D      V GV+ DLG+SS QID G 
Sbjct: 60  KDPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGA 116

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM    GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR 
Sbjct: 117 RGFSFRMDGPLDMRMDTTRGITAAQWLAEADARDIARVIRDYGEERFAVQIAKAIVARRS 176

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +    P   T +L++L+ + V  ++     PATR+FQALRI VN E+ +L  GL++A +
Sbjct: 177 ESGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFE 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKK 291
            L+ GG L+V+SFHSLEDR+VK+F        +S      R  + ++  P    + + + 
Sbjct: 236 RLEQGGRLVVISFHSLEDRIVKRFMQALARPEQSTAPEMRRAPLRAHELPAPQLRLLGR- 294

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
            V P++ +V+ N R+RSA +R   R
Sbjct: 295 -VRPSEAEVSANPRARSAIMRVAER 318


>gi|218562332|ref|YP_002344111.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20139252|sp|Q9PPL4|RSMH_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112360038|emb|CAL34830.1| S-adenosyl-methyltransferase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
          Length = 312

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 6   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 65

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 66  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 125

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R     ++ ++L  +I
Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 185

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 186 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 243

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 244 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 303

Query: 314 G 314
            
Sbjct: 304 F 304


>gi|313677372|ref|YP_004055368.1| s-adenosyl-methyltransferase mraw [Marivirga tractuosa DSM 4126]
 gi|312944070|gb|ADR23260.1| S-adenosyl-methyltransferase MraW [Marivirga tractuosa DSM 4126]
          Length = 301

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H PV+L++ +  L   P  + +D TFG GG+S++  +      ++  D+D  A   
Sbjct: 1   MSEYHEPVMLQQCLDGLAIKPNGIYVDLTFGGGGHSKAILEKLTDGKLLGFDQDQDAEVN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +       E          +       K VDGV+ DLGVSS Q +  +RGFS +    L
Sbjct: 61  AEAINHPGFEFVQANFRFVKKYLKLYRIKQVDGVLADLGVSSHQFNKAERGFSTRFDAEL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A +V+N+ +  DL +I G+ GE + A  +A AIV  R ++P  T  +L 
Sbjct: 121 DMRMDQHAPVTAKEVINEYSESDLHKIFGLYGEVRNAKTLASAIVSARAASPINTIGELK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ +     + N+     + FQALRI VN E++ L + L   E+ +K GG L+V+S+HS
Sbjct: 181 EILARFAKRGRENK--YYAQVFQALRIEVNEELKALEEALLQMEEVIKPGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK +           +    +   P  F+S+ +K +   +E++  N R+RSAKLR
Sbjct: 239 LEDRLVKNYINKGKLDGEEEKDFYGNVLKP--FKSVNRKPITAEEEELENNNRARSAKLR 296

Query: 313 AGMR 316
              +
Sbjct: 297 IAEK 300


>gi|237742793|ref|ZP_04573274.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13]
 gi|229430441|gb|EEO40653.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13]
          Length = 314

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N RS S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRSHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|210634276|ref|ZP_03298049.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279]
 gi|210158878|gb|EEA89849.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279]
          Length = 306

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 12/305 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-- 78
           +L++V+  L  + G V  D T G  G+S            ++ +D+D  A+    + +  
Sbjct: 1   MLQEVLEQLQLSAGSVACDCTLGGAGHSVRMAAQVGTEGLLLGIDQDDMALEAAGKRLDA 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                   L +  F  L + +    V G    +FDLGVSS Q+D   RGFS+ +  PLDM
Sbjct: 61  EAPGTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDAPLDM 120

Query: 136 RMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RM     +   ++V+N     DL RIL I GEEK A +IA  IV+RRQ AP  TT D   
Sbjct: 121 RMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREIVRRRQVAPLATTGDFVD 180

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  + + +  HPA RSFQA+RI VN+E++ L +GL +A + L   G + V+S+HS
Sbjct: 181 VIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAVRWLNPSGRVCVISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F   S        +      +  + +  T+K +V T E+VA N R+RSAK+
Sbjct: 241 LEDRIVKRLFQELSQGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVARNPRARSAKI 300

Query: 312 RAGMR 316
           R   R
Sbjct: 301 RCAER 305


>gi|41396357|gb|AAS04222.1| hypothetical protein MAP_1905c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 386

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA     P     V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 61  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 120

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G       DG++FDLGVSSMQ+D  +R
Sbjct: 121 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 180

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM      +A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 181 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 240

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +    +    HPA R+FQALRI VN+E++ L + L +A  AL  
Sbjct: 241 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 300

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 301 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 360

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 361 RNPRSAAVRLRALQRTQAP 379


>gi|161611203|ref|NP_960839.2| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|88911700|sp|P62474|RSMH_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 335

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA     P     V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G       DG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM      +A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +    +    HPA R+FQALRI VN+E++ L + L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 310 RNPRSAAVRLRALQRTQAP 328


>gi|254779311|ref|YP_003057416.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori B38]
 gi|263456117|sp|C7BZ94|RSMH_HELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|254001222|emb|CAX29192.1| Putative S-adenosyl-methyltransferase MraW [Helicobacter pylori
           B38]
          Length = 308

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 167/309 (54%), Gaps = 12/309 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         +K + GV+ DLGVSS+Q+D  DRGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDDRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLKSDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRTKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAG 314
           SRSAK+R  
Sbjct: 296 SRSAKMRVF 304


>gi|62184992|ref|YP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydophila abortus S26/3]
 gi|68565433|sp|Q5L6B5|RSMH_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|62148059|emb|CAH63812.1| putative S-adenosyl-methyltransferase [Chlamydophila abortus S26/3]
          Length = 298

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 155/314 (49%), Gaps = 25/314 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           MS+        H+PVL+ + ++L      K   D T GAGG++ +F     +++   A D
Sbjct: 1   MSATPS-----HIPVLVNECLSLFADRHPKFFCDVTVGAGGHAEAFLSAYPSIVSYDASD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A+S  +E +  + ++     A+F  L     +   DG++ DLGVSSMQ+D   RGF
Sbjct: 56  RDVAALSMAKEHLEKFGDRVHFHHASFEDLSKDPREHVYDGILADLGVSSMQLDNLSRGF 115

Query: 126 SFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ              GI+AS+V++    ++L +I    GEE Q    A AIV  R+  
Sbjct: 116 SFQGDDHALDMRMDVTKGITASEVLHTLREEELGKIFREYGEEPQWKNAAKAIVHFRRRK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL     K     +   +IHP T  FQALR++VN E  +L   L SA + L  G
Sbjct: 176 KIVTVRDLKEATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G LI++SF S EDR VK FF                     +   +TKKV++PT E++  
Sbjct: 236 GRLIIISFCSSEDRPVKWFFREAEKSG--------------LGMILTKKVIMPTYEEIRK 281

Query: 303 NRRSRSAKLRAGMR 316
           N R RSAKLR   +
Sbjct: 282 NPRCRSAKLRCFEK 295


>gi|19705032|ref|NP_602527.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|21759278|sp|Q8R6F5|RSMH_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|19712944|gb|AAL93826.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 314

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P    +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D  DRGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|262202917|ref|YP_003274125.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247]
 gi|262086264|gb|ACY22232.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247]
          Length = 336

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 175/311 (56%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           H+PVL  ++  LL P+      +V++DAT GAGG++           ++ +DRD  A++ 
Sbjct: 16  HLPVLAARMAELLAPSLESGDERVLVDATLGAGGHAELMLNRFPNLRLVGIDRDAHALAI 75

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +    ++ SL QA F QL   + D  +DG+   +FDLGVSSMQ+D   RGF++   
Sbjct: 76  AEKRLAPMADRISLHQARFDQLPQVLADAAIDGIDGALFDLGVSSMQLDQPGRGFAYAID 135

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+   G++A+DV+N  +  +L R+L   GEE+ A RIA A++  R+  PF T+ 
Sbjct: 136 APLDMRMNDEDGLTAADVLNTYSHGELARVLSEYGEERFAGRIASAVIAEREKEPFTTSA 195

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L +L+ + +   ++    HPA R+FQALRI VN+E++ +   + +A  A + GG + V+
Sbjct: 196 RLVALLYQAIPAATRRTGGHPAKRTFQALRIEVNHELDAIRAAVPAALDATRVGGRVAVM 255

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLEDR++K+ FA+R+         +        F+ IT+    P   ++  N RS  
Sbjct: 256 SYQSLEDRIIKREFATRTTSTSPRGLPVELPGTAPRFRLITRGAERPDAAELERNPRSAP 315

Query: 309 AKLRAGMRTVE 319
            ++R   R   
Sbjct: 316 VRVRVIERVAA 326


>gi|308184491|ref|YP_003928624.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180]
 gi|308060411|gb|ADO02307.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180]
          Length = 308

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   V  L +I    GE K+  +IAH I +R    PF+ 
Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERCAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|260495075|ref|ZP_05815204.1| MraW methylase [Fusobacterium sp. 3_1_33]
 gi|260197518|gb|EEW95036.1| MraW methylase [Fusobacterium sp. 3_1_33]
          Length = 314

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  V +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA D+VN    + L++I+   GEE+ A +IA  IV+ R+S+P   T DL
Sbjct: 128 LDMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIGKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|225850230|ref|YP_002730464.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1]
 gi|262824804|sp|C0QP68|RSMH_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225646628|gb|ACO04814.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1]
          Length = 293

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 22/308 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           + +H PVL  +V++      G+ I+DAT G GG+S    K      +I +D+D +A+   
Sbjct: 1   MVEHYPVLHREVLSFFKNIKGRYIVDATVGGGGHSFLLLKNLPETFLIGIDKDDYALEKA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +  +K +F L + +F  +   V    +  V   +FDLGVS+ Q+   +RGFSFQ+  
Sbjct: 61  EEKLSPFKGRFRLIKGSFKDIDTIVHSMDIKYVSGVLFDLGVSTFQLKT-ERGFSFQREE 119

Query: 132 PLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +    +  VVN+    +L +I+   GEEK A RIA AIV+ R+    +TT++
Sbjct: 120 PLDMRMDRTQKKTAFDVVNRYTKIELEKIIKDYGEEKFARRIASAIVEARKKKRIETTKE 179

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++        +  RIHPAT++FQA+RI VNNE+EE+ +G+      L+ GG++ V+S
Sbjct: 180 LAQIVYNVYPPPLRRGRIHPATKTFQAIRIEVNNELEEIKEGVNKGIDLLEKGGIIAVIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  +  R                    + +TKK + P  E++  N  SRSA
Sbjct: 240 FHSLEDRIVKNIYRERKRLKDI--------------EILTKKPITPGTEEIRENPPSRSA 285

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 286 KLRVAKRI 293


>gi|145296128|ref|YP_001138949.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum R]
 gi|263447419|sp|A4QFN1|RSMH_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|140846048|dbj|BAF55047.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 337

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 107/326 (32%), Positives = 166/326 (50%), Gaps = 24/326 (7%)

Query: 20  HVPVLLE-------KVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           HVPV+ +       + +  L      VI+DAT GAGG++  F        +I LDRD  A
Sbjct: 12  HVPVMRDRMAALIAENVEALG--ENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNA 69

Query: 71  VSCGQETMRDYKEQFSLFQATFS-----------QLQDYVPDKGVDGVVFDLGVSSMQID 119
           +   +  +  + E+F   Q  F             + D   + G+ G +FDLGVSSMQ+D
Sbjct: 70  LRDARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLD 129

Query: 120 CGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGF+++   PLDMRM    GI+A+D++N  +  D+ RIL   G+E+ A +IA A++K
Sbjct: 130 QVERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLK 189

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF T+  L  L+   +   ++    HPA R+FQALR+ VNNE++ L   L     
Sbjct: 190 EREKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITD 249

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  GG  + +S+ S ED+LVKKFF   +         +        F+ +T+     ++
Sbjct: 250 ALNVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASE 309

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIE 323
            ++  N R+   K+RA  R    S +
Sbjct: 310 AEIEENPRAAPVKVRAIERIANNSGD 335


>gi|83589686|ref|YP_429695.1| methyltransferase [Moorella thermoacetica ATCC 39073]
 gi|123524773|sp|Q2RK87|RSMH_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83572600|gb|ABC19152.1| methyltransferase [Moorella thermoacetica ATCC 39073]
          Length = 318

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 173/320 (54%), Gaps = 33/320 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP---------- 68
            H PVLL +V+ LL+P PG+  +DAT G GG+SR+              P          
Sbjct: 4   THQPVLLTEVLHLLDPQPGEFFVDATVGGGGHSRAIL------------PRLLPGGHLLG 51

Query: 69  -----FAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDC 120
                 AV+  +E +  +     + QA F     + +     GVDG++FDLGVSS Q+D 
Sbjct: 52  LDRDAEAVAAARERLAAFGANVEIVQANFRDLAAILEARGIPGVDGLLFDLGVSSYQLDN 111

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+Q   PLDMRM      +A++VVN    + LTR++   GEE+ A RIA  IV  
Sbjct: 112 PERGFSYQVDAPLDMRMGQDQELTAAEVVNNWPEEKLTRVIWQYGEERWAPRIAAFIVAS 171

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P  TT  L ++I++ +   ++ +  HPA R+FQALRI +N E++ L   L   +  
Sbjct: 172 RRQRPITTTGQLVAIIKEAIPAGARRSGHHPAKRTFQALRIAINGELDALRAALEQLDSI 231

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQ 297
           LK GG + V+SFHSLEDR+VK+ F S SG+      +   +     V   +T+K V+PT 
Sbjct: 232 LKPGGRVGVISFHSLEDRIVKEAFRSLSGRCTCPPGLPVCTCGRREVLVPVTRKPVIPTA 291

Query: 298 EDVAFNRRSRSAKLRAGMRT 317
            ++  N R+RSAKLR   R 
Sbjct: 292 AEIVANPRARSAKLRVARRV 311


>gi|323692152|ref|ZP_08106395.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Clostridium symbiosum WAL-14673]
 gi|323503726|gb|EGB19545.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Clostridium symbiosum WAL-14673]
          Length = 314

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++   E
Sbjct: 5   HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++ ++ ++ ++ +  + + + +     VDG+  DLGVSS Q+D  +RGF++++    
Sbjct: 65  RLKEFGDKVTIVRSNYENVDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                   + ++A D+VN  +  +L  I+   GE++ A  IA  IV+ RQ    +TT +L
Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI +N E+E L + +      L  GG L +++F
Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLEKSIDKMTDLLAPGGRLSIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F                     +  + +T+K ++P++E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304

Query: 310 KLRAGMRT 317
           KLR   ++
Sbjct: 305 KLRVFEKS 312


>gi|157414980|ref|YP_001482236.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|263445755|sp|A8FLC2|RSMH_CAMJ8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157385944|gb|ABV52259.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747617|gb|ADN90887.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931891|gb|EFV10846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 310

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|296116429|ref|ZP_06835043.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977022|gb|EFG83786.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC
           23769]
          Length = 340

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 172/311 (55%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+  L P  G   LD TFG GGY+R+        + A+DRDP A++ G    
Sbjct: 15  HIPVMLAEVLCDLAPRDGATYLDGTFGGGGYARAILSAAECTLWAIDRDPAAIARGAALA 74

Query: 79  RDYKE-----QFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
             + +     +  L +  F  +   +  +GVD    VV DLGVSS QID  +RGFSF+  
Sbjct: 75  TSFPDGQEQSRLRLIKGGFGDMASLLAARGVDALDGVVLDLGVSSYQIDQPERGFSFRMD 134

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G +A+DVVN+    +L  I+   GEE+ + R+A AIV  R   P  TT  
Sbjct: 135 GPLDMRMGDEGTTAADVVNRYQESELADIIYTYGEERMSRRVARAIVAARAENPITTTAA 194

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++  V   + + I PATR+FQ LRI+VN+E+ ++ +GL  A   L  GG L+VVSF
Sbjct: 195 LADIVRSVVRADR-SGIDPATRTFQGLRIYVNDELGQIERGLEQALGLLAPGGRLVVVSF 253

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           HSLEDRLVK      SG++       P     +     F+ +  K + P+  +   N R+
Sbjct: 254 HSLEDRLVKLAMNRASGRMPGPSRHDPGAAMQSTQRPAFRLVRNKAIRPSDTECRHNPRA 313

Query: 307 RSAKLRAGMRT 317
           RSA+LR   R 
Sbjct: 314 RSARLRTVERV 324


>gi|289766581|ref|ZP_06525959.1| methyltransferase [Fusobacterium sp. D11]
 gi|289718136|gb|EFD82148.1| methyltransferase [Fusobacterium sp. D11]
          Length = 314

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D  +RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  I++ R+S+P + T DL
Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P   ++  N RS S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRSHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|86151694|ref|ZP_01069908.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124195|ref|YP_004066199.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841323|gb|EAQ58571.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017917|gb|ADT66010.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 310

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|294784753|ref|ZP_06750041.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27]
 gi|294486467|gb|EFG33829.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27]
          Length = 314

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|225351427|ref|ZP_03742450.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157771|gb|EEG71054.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 343

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H PVLL   + L+ P    PG + +D T G  G+S +F K      +I +DRD
Sbjct: 1   MTDVTTIHQPVLLRDCVDLVVPALARPGSIAVDCTLGLAGHSTAFLKASPQARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A+S   + MR     ++F    A F      + D+    V+ V  DLG+SS+QID  +
Sbjct: 61  TEALSLATQRMRMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +   +A  ++ + +  DL RI    GEE+ + +IA  IV+RR+
Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQILAEYSFADLVRIFRTYGEERFSKQIAREIVRRRE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 IEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F        +     +        F+ +T+  +   +E++A
Sbjct: 241 GGRLVVESYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAAEEEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 MNPRSASVRLRAVE 314


>gi|317010927|gb|ADU84674.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           SouthAfrica7]
          Length = 308

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+ +  P    V++D T G GG+S++      +  +I +D+D  A
Sbjct: 1   MQGIENLHQSVLLQEVLQVFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++E++ +    F++      +     + GV+ DLGVSS+Q+D  DRGF+F
Sbjct: 61  QEIAKERLKTFEERYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDDRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N  +V  L +I    GE K+  +IAH IV+RR   PF+ 
Sbjct: 121 HSPTLDMRMDLESELNAQKVINSYSVVALEKIFKDYGEIKEYKKIAHHIVERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAIRIEVNHELEELKEFLQDA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDALSFKCTCSNNHALGEILTKKPITPSPEEIKRNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|239931801|ref|ZP_04688754.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 309

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 178/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL P    PG V++D T G GG+S +  +      ++ALDRD  A+    E +
Sbjct: 1   MLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLSGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + E+ +L  A + +L D +       V GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  L  L
Sbjct: 121 RMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSARLVEL 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A KAL   G + V+S+HSL
Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AQRIRE 306


>gi|256028668|ref|ZP_05442502.1| methyltransferase [Fusobacterium sp. D11]
          Length = 331

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 25  YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSK 84

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D  +RGFS++    
Sbjct: 85  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVK 144

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  I++ R+S+P + T DL
Sbjct: 145 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDL 204

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 205 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFH 262

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P   ++  N RS S+K
Sbjct: 263 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRSHSSK 322

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 323 LRILERI 329


>gi|256846119|ref|ZP_05551577.1| MraW methylase [Fusobacterium sp. 3_1_36A2]
 gi|256719678|gb|EEU33233.1| MraW methylase [Fusobacterium sp. 3_1_36A2]
          Length = 314

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 8   YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 68  KRLEKFGSKWKVFKGNFENIDTIAYMASVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 306 LRILERI 312


>gi|21672883|ref|NP_660948.1| hypothetical protein CT0042 [Chlorobium tepidum TLS]
 gi|25090698|sp|Q8KGC6|RSMH_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21645935|gb|AAM71290.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 318

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 167/314 (53%), Gaps = 18/314 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV------IALDRDPFAVS 72
            H PVL  + ++LL   P  + +D T G GG+S    +    +      + +D+D  A+ 
Sbjct: 6   YHEPVLARESVSLLVTLP-GIYIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTHALE 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRG 124
              + + ++ ++  L +  F  +++ V            V G + DLGVSS QID  +RG
Sbjct: 65  AAGKKLGEFGDRRRLVRGNFGMVKELVEPMMRGAGNGLPVMGFLLDLGVSSFQIDTPERG 124

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ K GPLDMRM   G  +A+D+VN      L ++    GEE    RIA AIV  R SA
Sbjct: 125 FSYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLGGRIARAIVSARSSA 184

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P  TT +L+ +I +     K+  I   +R +QALRI VN+E+  L Q L    + L +GG
Sbjct: 185 PLTTTGELAEVI-RAACPRKDLAIKTLSRIYQALRIEVNDELGVLEQALEDGFELLSSGG 243

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAF 302
              V+S+HSLEDR+VK+FFA+++      + + +     PA    + +K +  T E+++ 
Sbjct: 244 RFAVISYHSLEDRIVKRFFAAKTSADWGPKGLALREPLKPAEAVLVVRKPLEATAEEISR 303

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSA+LR   +
Sbjct: 304 NPRSRSARLRVIQK 317


>gi|91200077|emb|CAJ73120.1| similar to S-adenosyl-dependent methyltransferase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 22/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV++++V+  L   PG +ILD T G GG++            +I +D+D   ++  +E
Sbjct: 10  HEPVMVDEVLEYLCLQPGSIILDCTVGGGGHAGKIMDRIKPDGCLIGIDKDFDMLNMTKE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F L+ A +    + +      GV GV+ DLG SS+Q D  +RGFSF K GPL
Sbjct: 70  CLSDRGCPFKLYHADYVDADEVLRQAGIDGVHGVLLDLGASSLQFDSAERGFSFSKEGPL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +    A D++ + + +DL  +L   GEE+ + RIA  I+K R  +  ++T  L+
Sbjct: 130 DMRMDRTASFMAQDLLRKISERDLQALLKKYGEERWSKRIARRIIKERSVSGLKSTTQLA 189

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++ V   + +RIHPATR FQALRI VN E+E L + L     ++  G  + V+SFHS
Sbjct: 190 RIIERAVPSMR-HRIHPATRVFQALRIAVNKELESLEKFLNKIHFSMVKGARIAVISFHS 248

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F                     +F  ITKK + P   ++  N RSRSAKLR
Sbjct: 249 LEDRIVKNSFIEME--------------DKNIFHIITKKPLRPGASEIERNARSRSAKLR 294

Query: 313 AGMRT 317
              R 
Sbjct: 295 VAERI 299


>gi|269795582|ref|YP_003315037.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542]
 gi|269097767|gb|ACZ22203.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542]
          Length = 346

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 179/311 (57%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           T   H+PVLL++ + LL PA   PG V +D T G GG++ +  +      VI +DRDP A
Sbjct: 22  TSDRHLPVLLDRCVELLAPALSVPGAVYVDCTLGMGGHTEAILERLPEVRVIGIDRDPQA 81

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  +  +F+   A + ++ D V ++G   V G++ DLGVSS+QID  +RGFS+
Sbjct: 82  LELAGARLERFGSRFTGVHAVYDEIGDVVAEQGLTGVQGILMDLGVSSLQIDERERGFSY 141

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  +  ++A+DV+N  + +DL RIL   GEE+ AS+IA +IV +R++ P++
Sbjct: 142 AQDAPLDMRMDSTASLTAADVLNTYSERDLARILREYGEERFASKIARSIVAKREARPWE 201

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            + DL  L++  +   ++    +PA R+FQALRI VN E+E L + L +A +AL  GG +
Sbjct: 202 RSADLVDLVRACIPAATRKGTGNPAKRTFQALRIEVNGELEVLERALPAAVEALAVGGRI 261

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V S+HSLEDRL K+     +         +    H      +T+      + ++  N R
Sbjct: 262 VVESYHSLEDRLTKRELGRGAVSSAPHDLPVEPETHKPYLSLLTRGAEEADEAELERNPR 321

Query: 306 SRSAKLRAGMR 316
           S S +LRA  R
Sbjct: 322 SASVRLRAAER 332


>gi|54023726|ref|YP_117968.1| S-adenosyl-methyltransferase MraW [Nocardia farcinica IFM 10152]
 gi|115311586|sp|Q5YYY7|RSMH_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54015234|dbj|BAD56604.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 175/317 (55%), Gaps = 13/317 (4%)

Query: 18  GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             HVPVLLE+   LL PA   PG V +DAT G GG++  F        ++ LDRD  A+ 
Sbjct: 8   ARHVPVLLERADELLGPALTEPGAVYVDATLGLGGHAEHFLTRYPGLRLVGLDRDTEALR 67

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
              E +  + E+ +L    +  + D        P   V  ++ DLGVSSMQ+D  +RGF+
Sbjct: 68  LAGERLAPFAERITLVHTRYDGIADALGQAGLPPTGSVSAILMDLGVSSMQLDEAERGFA 127

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  + GI+A+DV+N  +  DL R+L   GEE+ A +IA  +++RR   PF
Sbjct: 128 YSVDAPLDMRMDPTSGITAADVLNTYSHGDLARVLKNYGEERFAGKIASEVIRRRAHKPF 187

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T+ +L  L+  T+  + +    HPA R+FQALR+ VN E++ L   L +A  AL+ GG 
Sbjct: 188 ETSGELVELLYATIPAAARRTGGHPAKRTFQALRVEVNGELDSLRAALPAALDALRVGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+S+ SLEDR+VK+  A+R+     V   +        F+ +T+      + ++A N 
Sbjct: 248 IVVMSYQSLEDRVVKQELAARTSSRTPVDLPVELPGMGPEFRLLTRGAEKAGEREIAENP 307

Query: 305 RSRSAKLRAGMRTVERS 321
           R+   ++RA  R    S
Sbjct: 308 RAAPVRMRAAERIEAAS 324


>gi|15611713|ref|NP_223364.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori J99]
 gi|8134818|sp|Q9ZLD4|RSMH_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4155209|gb|AAD06233.1| putative [Helicobacter pylori J99]
          Length = 308

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 165/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    +++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGILIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +           S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 RSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A        +L V
Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKEAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|320352815|ref|YP_004194154.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM
           2032]
 gi|320121317|gb|ADW16863.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM
           2032]
          Length = 306

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 163/301 (54%), Gaps = 25/301 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           +L++V+  L P P  + +D T G GG++++  +       V+  + D  A    ++ +  
Sbjct: 1   MLDEVLHWLQPRPNALYVDGTLGLGGHAQAILEQTAPSGRVVGFEWDDDAAQAARQRLSG 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y ++ S+   ++  L   +       ++G++ DLGVSS+Q+D  +RGFSF+    LDMRM
Sbjct: 61  YGDRLSIVHGSYGDLVPELAKLGVVEIEGLLVDLGVSSLQLDRAERGFSFRTDSVLDMRM 120

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                 +A+ ++ QA+ + L  I    GEE+QA RIA  + + R+  P  TT  L++++ 
Sbjct: 121 DRRSPLTAASLIAQASEEQLADIFYHYGEERQARRIARFLAEAREKEPVATTGRLAAIVA 180

Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + V       ++H AT+ FQALRI VN E+  L + L++A + L  G  + +++FHSLED
Sbjct: 181 EAVPRKYHPAKVHVATKVFQALRIAVNGELNNLTRLLQTAPQVLAEGARVCIITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+ F                  +   ++ +T++ V P+ E++  N R+RSAKLR   
Sbjct: 241 RIVKQAF-----------------QNNPAYEVVTRRPVEPSAEEIRRNPRARSAKLRVAR 283

Query: 316 R 316
           R
Sbjct: 284 R 284


>gi|283956102|ref|ZP_06373589.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792422|gb|EFC31204.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 310

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILTIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|315586621|gb|ADU41002.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 35A]
          Length = 308

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  +LL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSILLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++         DK + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                         ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPMVALEKIFKDYGEIKEYKKIAHKIAERRTKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|88606985|ref|YP_505272.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ]
 gi|123495035|sp|Q2GK29|RSMH_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88598048|gb|ABD43518.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ]
          Length = 295

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/308 (41%), Positives = 182/308 (59%), Gaps = 23/308 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           +  H PVLL +++ LL+P  G V +DATFG GGYSR   +     V+A+D+DP A    Q
Sbjct: 1   MDSHRPVLLNEMLELLSPKDGAVYVDATFGGGGYSRGILERAKCTVLAIDQDPIASEFYQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                +  +   F + FS+L++   +     VDGVVFD+GVSSMQ+   DRGFSF K GP
Sbjct: 61  SLHSQFPGRVHFFLSKFSRLREALQHFDHNQVDGVVFDVGVSSMQLSDPDRGFSFMKEGP 120

Query: 133 LDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTT 188
           LDMRM        SA+  VN  + KD+  ++   G E+ + R+  AI+  R+ +   + T
Sbjct: 121 LDMRMDMLRSQSKSAATFVNSLSEKDMADVIFYYGGERLSRRVTRAIISARESNNKIRNT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ +I+  V  SK N I PATR+FQA+RI+VN+E+EEL  GL +A + +  GG +IV 
Sbjct: 181 SDLAKIIRSVVPRSKANPIDPATRTFQAIRIWVNDELEELKAGLEAASQIVGVGGKIIVT 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK  F +   K                FQ I KK + PT+++++ N RSRS
Sbjct: 241 SFHSLEDRIVKHKFNALREKG---------------FQLINKKAIKPTEKEISENTRSRS 285

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 286 AKLRGIVK 293


>gi|307637393|gb|ADN79843.1| rRNA small subunit methyl transferase H [Helicobacter pylori 908]
          Length = 308

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 165/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +           S  +A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 RSHALDMRMDLESESNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|226307047|ref|YP_002767007.1| methyltransferase MraW [Rhodococcus erythropolis PR4]
 gi|262825456|sp|C1A0Y3|RSMH_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226186164|dbj|BAH34268.1| methyltransferase MraW [Rhodococcus erythropolis PR4]
          Length = 332

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 111/330 (33%), Positives = 172/330 (52%), Gaps = 18/330 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59
           M+         HVPVLL +   LL PA         G  ++DAT G GG+S  F      
Sbjct: 1   MNEPSDADGFAHVPVLLHRADDLLGPAITAVGDGGEGAYMIDATLGLGGHSEFFLGKYPG 60

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLG 112
            ++I LDRD  A+    E +  + ++ +    T+  ++D          + V  ++FDLG
Sbjct: 61  LHLIGLDRDTNALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLG 120

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQ+D  DRGF++    PLDMRM  + G++A++V+N  +  DL RIL   GEE+ A +
Sbjct: 121 VSSMQLDEADRGFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGK 180

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I+++R+  PF T+  L  L+ +T+   ++    HPA R+FQALRI VN E++ L  
Sbjct: 181 IASEILRQREREPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRA 240

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            + +   AL  GG ++ +S+ SLEDR+VK     RS         +        F+ +T+
Sbjct: 241 AVPAGLDALAVGGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFRILTR 300

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
                +++++  N RS   +LRA  R   R
Sbjct: 301 GAERASEQEIEENPRSAPVRLRAAERISRR 330


>gi|254774999|ref|ZP_05216515.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 334

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA     P     V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G       DG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM      +A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +    +    HPA R+FQALRI VN+E++ L   L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 310 RNPRSAAVRLRALQRTQAP 328


>gi|118464814|ref|YP_881532.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104]
 gi|263456513|sp|A0QF44|RSMH_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118166101|gb|ABK66998.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104]
          Length = 335

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA     P     V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G       DG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM      +A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +    +    HPA R+FQALRI VN+E++ L   L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 310 RNPRSAAVRLRALQRTQAP 328


>gi|325995985|gb|ADZ51390.1| rRNA small subunit methyltransferase H [Helicobacter pylori 2018]
 gi|325997580|gb|ADZ49788.1| S-adenosyl methyltransferase [Helicobacter pylori 2017]
          Length = 308

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++      +   + +   + DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +           S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+ 
Sbjct: 121 RSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V
Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA--RNLKGAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|183602416|ref|ZP_02963782.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683269|ref|YP_002469652.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241191230|ref|YP_002968624.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196636|ref|YP_002970191.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|263445932|sp|C6A8W4|RSMH_BIFLB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445940|sp|C6AJH2|RSMH_BIFAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447580|sp|B8DSU7|RSMH_BIFA0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183218335|gb|EDT88980.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620919|gb|ACL29076.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249622|gb|ACS46562.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251190|gb|ACS48129.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177346|gb|ADC84592.1| MraW [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794223|gb|ADG33758.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 353

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 159/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67
           +      H PVLL++ + L+ PA      V +D T G  G++ +F K   N  VI +DRD
Sbjct: 1   MTDFSQIHKPVLLQECVDLVTPALHASDSVAVDCTLGLAGHTIAFLKAAPNATVIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A+      +       +F    A F Q  + +  +    V  V  DLG+SS+QID  +
Sbjct: 61  EEALDKATARIAQEGLSARFVPVHAAFDQFDEVLRAQGVSRVQAVFMDLGLSSLQIDERE 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A +++   +   L  I    GEE+ +  IA  IV++RQ
Sbjct: 121 RGFSYAHDAPLDMRMDTSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRQ 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           S+P +T+  L++L+   +  ++    +PA R FQALRI VN E+++L + L      L  
Sbjct: 181 SSPLETSSQLTALVDAVIPAARRGSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLEDR VK F A            +        F+++TK  V     ++A
Sbjct: 241 GGRLVVESYHSLEDRTVKNFMAQGLRVDAPADMPVIPPDMQPFFKALTKGAVKADAGEIA 300

Query: 302 FNRRSRSAKLRAGM 315
           +N RS S +LRA  
Sbjct: 301 YNPRSASVRLRAVE 314


>gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Kitasatospora setae KM-6054]
          Length = 322

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 179/316 (56%), Gaps = 10/316 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDR 66
           +       H+PV+LE+ +  L PA   PG V++DAT G GG+S +         +IA+DR
Sbjct: 2   STDSPAPRHIPVMLERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIAVDR 61

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123
           DP A+    E +  + ++ +L  A + ++   + +     V GV+FDLGVSSMQ+D  DR
Sbjct: 62  DPRALELSAERLARFGDRATLVHAVYDEIPRVLDELDVPEVHGVLFDLGVSSMQLDEADR 121

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM    GISA++V+N     DL RIL + GEE+ A +IA A+++ R+ 
Sbjct: 122 GFAYSQDAPLDMRMDQTRGISAAEVLNTYGHGDLARILKVYGEERFAGKIASAVLRERER 181

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF  +  L  L++  +   ++    +PA R+FQALRI VN E+E L + +  A  AL  
Sbjct: 182 EPFTNSARLVELVRNAIPAATRRTGGNPAKRTFQALRIEVNGELEVLDRAIPGALDALAV 241

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+S+ SLEDRLVK++F + +         +         + +T+   + T+E++ 
Sbjct: 242 GGRIVVMSYQSLEDRLVKQYFQAGATSTAPPGLPVIPEELQPWLKLLTRGAELATEEEIE 301

Query: 302 FNRRSRSAKLRAGMRT 317
            NRR+   +LR   R 
Sbjct: 302 ENRRAAPVRLRVAERI 317


>gi|326440704|ref|ZP_08215438.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 309

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/306 (39%), Positives = 177/306 (57%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +         +IALDRDP A+    E +
Sbjct: 1   MLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLSAERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y E+ +L  A + +L   +       V GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R + PF T+  L  L
Sbjct: 121 RMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSARLVEL 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A  AL   G + V+S+HSL
Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT ++VA NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AQRIRE 306


>gi|238809925|dbj|BAH69715.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 320

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 161/318 (50%), Gaps = 16/318 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIA 63
            K +   ++     H  VLL++ I  LN  P  + +D T G GG+S    K      +IA
Sbjct: 10  KKFLKEVVNKMENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIA 69

Query: 64  LDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQID 119
            D+D FA+   ++ +   K   F L  + F  ++   D +    VDG++ DLG+SS Q+D
Sbjct: 70  FDKDTFAIEESRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVD 129

Query: 120 CGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+ K+  LDMRM  S    A  VVN  +   L ++L    E K A ++A AI+ 
Sbjct: 130 NDERGFSYNKNARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIIS 189

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +R   P  TT +L+ +++           +P    FQA+RI VNNE + L Q L+ A + 
Sbjct: 190 KR---PITTTLELAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIEL 246

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK    L V++FHSLED +VK FF S     +  +  I       V      KV +PT  
Sbjct: 247 LKPNTSLAVITFHSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNN 300

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N+RSRSAKLR   +
Sbjct: 301 ELELNKRSRSAKLRVLKK 318


>gi|86153556|ref|ZP_01071760.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843282|gb|EAQ60493.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 310

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKIFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|167758763|ref|ZP_02430890.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704]
 gi|167663503|gb|EDS07633.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704]
          Length = 311

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL++ I  LN  P  + +D T G GG++   C       ++I +D+D  A+ 
Sbjct: 1   MEFEHKSVLLDETINGLNIKPDGIYVDGTLGGGGHAYEVCTRLGTKGSIIGIDQDAAAIE 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                + D+ E+ ++ ++ +  ++  + +     VDG++ DLGVSS Q+D  +RGFS+++
Sbjct: 61  AADARLNDFGEKVTIVRSNYCDMKSRLHELGIDKVDGIILDLGVSSYQLDTAERGFSYRE 120

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A D+VN  +  DL R++   GE+K A  IA  IV +R   P +TT
Sbjct: 121 DAPLDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAQRGKGPIETT 180

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I+  +      +  HPA R+FQA+RI +N E+E L   L    + L  GG L +
Sbjct: 181 GQLTEIIRGAIPMKYQKKSGHPAKRTFQAIRIELNRELEVLRDTLDDMIELLNPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F                   + +    +T+K ++P++ ++  N RS
Sbjct: 241 ITFHSLEDRIVKSAFKKNENPCTCPPDFPVCVCGNVSKGSIVTRKPILPSKYEMEANSRS 300

Query: 307 RSAKLRAGMR 316
           +SAKLR   R
Sbjct: 301 KSAKLRIFER 310


>gi|94984873|ref|YP_604237.1| methyltransferase [Deinococcus geothermalis DSM 11300]
 gi|263446197|sp|Q1J0B6|RSMH_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94555154|gb|ABF45068.1| methyltransferase [Deinococcus geothermalis DSM 11300]
          Length = 308

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/290 (38%), Positives = 165/290 (56%), Gaps = 18/290 (6%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           PG+VI+D T G  G++R   + G++VI +D+DP+A++  +E                 +L
Sbjct: 34  PGRVIVDGTLGGAGHTRLLLEAGASVIGIDQDPYALNRAREAQLPQLTVLEGNYRDMREL 93

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKD 155
              +    VDGV+ D+GVSS Q+D   RGFS+    PLDMRM+ SG SA++VVN    ++
Sbjct: 94  LAGIGVTQVDGVLLDIGVSSFQLDDAARGFSYHTDAPLDMRMAQSGESAAEVVNGYPEEE 153

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215
           L  I+   GEE+ + RIA AIV+ R  AP Q+T  L+ +I++      +  IHPA R+FQ
Sbjct: 154 LAAIIYEYGEERHSRRIARAIVQARTQAPIQSTVQLAEIIKRAYPGF-SKGIHPARRTFQ 212

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VN+E+  L  GLR+AE  L  GG L V++FHSLEDR+VK+F  +           
Sbjct: 213 ALRIHVNDELGALRDGLRAAEALLTPGGRLAVIAFHSLEDRIVKRFLRAS---------- 262

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
                     +S+TK+ V  ++E+   N R+RSAKLRA  +        +
Sbjct: 263 -------PTLKSLTKRPVEASEEERGRNPRARSAKLRAAEKVAAPEGLPE 305


>gi|269792475|ref|YP_003317379.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100110|gb|ACZ19097.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 313

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 169/311 (54%), Gaps = 26/311 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           +  H+PV+L+K++ LL P     +++D T GAGG+SR+  +   G+++I +D+D   +  
Sbjct: 1   MTVHIPVMLDKILELLRPWEEVGLVVDGTLGAGGHSRAILERCQGASLIGIDQDQSILDI 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  + ++       F  +   + D     V   VFDLG+SS Q+D  +RGFSF   
Sbjct: 61  AREVLSPFGDRVRTVLGNFRDVGRILADLGSPRVSAFVFDLGISSWQVDTPERGFSFNYK 120

Query: 131 GPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186
           GPLDMRM        +A+D+VN  ++ +L  +    GE+  A ++A AI   R +  P +
Sbjct: 121 GPLDMRMDMGRLGSRTAADIVNGWSMAELAALFRRYGEDPFAYQVARAICRHREKEGPIE 180

Query: 187 TTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           T + L S+I+  +     +  R HPA R FQALRI VN+E+  L + L         G  
Sbjct: 181 TCEALVSVIRSAIPAPAQRKMRGHPARRIFQALRIEVNDELGALEELLDQLPSMGSEGCK 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +I +++HSLEDRLVK      +G+ + V               +T+K +VP++E+V  NR
Sbjct: 241 VIFITYHSLEDRLVKGRMREWAGQDLGVP--------------LTRKPLVPSEEEVELNR 286

Query: 305 RSRSAKLRAGM 315
           R+RSAK+R  +
Sbjct: 287 RARSAKVRCFV 297


>gi|254382600|ref|ZP_04997958.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces sp. Mg1]
 gi|194341503|gb|EDX22469.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces sp. Mg1]
          Length = 310

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 174/306 (56%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL P    PG V++D T G GG+S +        ++I LDRD  A+    E +
Sbjct: 2   MLQRCLDLLAPALQKPGAVVVDCTLGLGGHSEALLTRFPEAHLIGLDRDKEALRLSGERL 61

Query: 79  RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  + +L  A ++ L + +       V G++FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 62  APFGGRVTLVHAIYADLAEVLDGLRIPAVQGILFDLGVSSMQLDEADRGFAYAQDAPLDM 121

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + GISA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 122 RMDQTTGISAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAVVREREKEPFSNSARLVEL 181

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A   +  GG + V+S+HSL
Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLSYHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+ R 
Sbjct: 242 EDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRRAAPARFRG 301

Query: 314 GMRTVE 319
             R  E
Sbjct: 302 VERIRE 307


>gi|119331204|ref|NP_001073250.1| probable methyltransferase-like protein 15 [Bos taurus]
 gi|160012244|sp|A0JN95|MET15_BOVIN RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|117306276|gb|AAI26576.1| Methyltransferase 5 domain containing 1 [Bos taurus]
 gi|296479746|gb|DAA21861.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           METT5D1 [Bos taurus]
          Length = 407

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 128/335 (38%), Positives = 184/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +  + ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV      GV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R   P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                     S+       +  + +   
Sbjct: 312 PGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  EDV  N R RSAKLRA ++
Sbjct: 372 PLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIK 406


>gi|291384760|ref|XP_002709072.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
          Length = 407

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 137/351 (39%), Positives = 192/351 (54%), Gaps = 41/351 (11%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--V 61
           KS    S A+      H+PV++++V+  L P  G+V LD TFG+GG+SR+  +  S+  +
Sbjct: 59  KSQDRDSEAMTEL---HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHSRAILQKESDITL 115

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSM 116
            ALDRDP A +  ++    Y +Q       FSQ +  +          DGV+ DLG SSM
Sbjct: 116 YALDRDPTAYAIAEQLSDLYPKQIRAMLGQFSQAEALLTKAGVQPGTFDGVLLDLGCSSM 175

Query: 117 QIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           Q+D  +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +I
Sbjct: 176 QLDAPERGFSIRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKI 235

Query: 173 AHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNE 224
           A AIV+ R   P   TQ L+S+         +Y  K       H AT++FQALRIFVNNE
Sbjct: 236 ASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNE 295

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------ASR 265
           + EL  GL++A+K L+ GG L+ +SFHSLEDR+VK+F                    AS+
Sbjct: 296 LNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQKVVQASQ 355

Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  +  + +   P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 356 LSSGPENKEEVSAGRAPLMWELINKKVLTPEDQDVQENPRGRSAKLRAAIK 406


>gi|116511689|ref|YP_808905.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107343|gb|ABJ72483.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactococcus lactis subsp. cremoris SK11]
 gi|300071267|gb|ADJ60667.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 298

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/294 (32%), Positives = 156/294 (53%), Gaps = 9/294 (3%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQFSL 87
           L   P  + +DAT G  G+S          ++ + D+D  A +  +  + +   +++ +L
Sbjct: 2   LEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVRLSEQLAEDKVTL 61

Query: 88  FQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-S 143
            ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K   LDMRM  S   S
Sbjct: 62  IKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEARLDMRMDQSQTLS 121

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
           A +VVN    + L RI    GE+K + +IA  I + R+  P +TT +L+ LI+  +   +
Sbjct: 122 AYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIELADLIKSALPQKE 181

Query: 204 -NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
              + HPA R FQA+RI VN+E+    + +  A   LK  G + V++FHSLEDRL K  F
Sbjct: 182 LKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITFHSLEDRLTKSIF 241

Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              S   +     +      A  + I +K V+ ++E++ FN R+ SAKLR   +
Sbjct: 242 KEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSAKLRVAQK 295


>gi|314929325|gb|EFS93156.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL044PA1]
          Length = 337

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP-APGK--VILDATFGAGGYSRSFCKMGS--NVI 62
            M++    +   HVPV+  +++ LL P       V +D T G GG++ +         ++
Sbjct: 2   LMATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++     ++ + ++  L  A   +L + + D     VD V+ DLG+SS+QID
Sbjct: 62  GIDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM    G +A+ V+N+++  DL RIL   GEEK A RI  AIV 
Sbjct: 122 EVNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+++HSLEDR VK+ F             I   +  A F  +T+    P 
Sbjct: 242 DRLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++++ N RS SA+LR   R 
Sbjct: 302 ADEMSANPRSASARLRVIERV 322


>gi|297571245|ref|YP_003697019.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931592|gb|ADH92400.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM
           20595]
          Length = 336

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 111/317 (35%), Positives = 169/317 (53%), Gaps = 10/317 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGS--NVIALD 65
            S        HVPVLL+ +I +L PA     V++D T G GG+S +F +      VI +D
Sbjct: 1   MSKTADNNALHVPVLLQPIIDMLGPALEGDSVLIDCTLGMGGHSEAFLRTFPSLRVIGID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCG 121
           RD  A+      +  + ++F     T+  +      Y     VD ++ DLGVSS+Q+D  
Sbjct: 61  RDEQAIELASARLAPFGDRFQAVHTTYDDVDRVAFTYGKSGCVDAILMDLGVSSLQLDEV 120

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGFS+ +  PLDMRM    G++A +++N  +  ++ RIL + GEEK AS+IA AIVKRR
Sbjct: 121 DRGFSYSQDAPLDMRMDTSKGMTAGELLNSYSHGEIARILRVYGEEKFASQIARAIVKRR 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  P + T++L+ L++ T+    +    +P+ R+FQALR+ VNNE++ L   +  A +AL
Sbjct: 181 EDHPLERTRELADLVRDTIPAPARRKGGNPSKRTFQALRVAVNNELDVLEAAVPRALEAL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG + V S+ SLEDR+VK  F             I    H      +T+      + +
Sbjct: 241 RVGGRIAVESYQSLEDRIVKDAFNVGLTSTSPAGLPIELADHAPYLAPLTRGAFKADRTE 300

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RS S +LR   R
Sbjct: 301 QELNPRSASVRLRGAER 317


>gi|19553366|ref|NP_601368.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC
           13032]
 gi|62391005|ref|YP_226407.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC
           13032]
 gi|24212026|sp|Q8NNM7|RSMH_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21324936|dbj|BAB99559.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326344|emb|CAF20506.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Corynebacterium glutamicum ATCC
           13032]
          Length = 337

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/326 (32%), Positives = 166/326 (50%), Gaps = 24/326 (7%)

Query: 20  HVPVLLE-------KVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           HVPV+ +       + +  L      VI+DAT GAGG++  F        +I LDRD  A
Sbjct: 12  HVPVMRDRMAALIAEHVEALG--ENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNA 69

Query: 71  VSCGQETMRDYKEQFSLFQATFS-----------QLQDYVPDKGVDGVVFDLGVSSMQID 119
           +   +  +  + E+F   Q  F             + D   + G+ G +FDLGVSSMQ+D
Sbjct: 70  LRDARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLD 129

Query: 120 CGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGF+++   PLDMRM    GI+A+D++N  +  D+ RIL   G+E+ A +IA A++K
Sbjct: 130 QVERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLK 189

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF T+  L  L+   +   ++    HPA R+FQALR+ VNNE++ L   L     
Sbjct: 190 EREKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITD 249

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  GG  + +S+ S ED+LVKKFF   +         +        F+ +T+     ++
Sbjct: 250 ALNVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASE 309

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIE 323
            ++  N R+   K+RA  R    S +
Sbjct: 310 AEIEENPRAAPVKVRAIERIGNNSGD 335


>gi|221194757|ref|ZP_03567814.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626]
 gi|221185661|gb|EEE18051.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626]
          Length = 328

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP--FAVSCG 74
           H PV+L +V+  LNP PG+++ D T G  G++    K        I +D+D      +  
Sbjct: 12  HQPVMLAEVLQQLNPKPGEIVCDCTLGGAGHTVELAKRIVPDGLSIGIDQDDMAHEAAAA 71

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +        +F   +  F  L   +      GVD  +FD+GVSS Q+D  +RGFS+ +  
Sbjct: 72  RIAKEVPTAEFLPLKGNFGDLDTLLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 131

Query: 132 PLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM       +A +VVN     DLTRIL + G+E  A RIAH IV+ R++AP +TT 
Sbjct: 132 PLDMRMDPGKQTPTAQEVVNTYTEADLTRILRVFGDETFAPRIAHRIVEVRKTAPIKTTL 191

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+ ++   ++ +  HPA ++FQALRI VN+E++ L +GLRSA      GG + V+
Sbjct: 192 QLVEVIKASIPAAARRHGGHPARKTFQALRIEVNHELDVLERGLRSAIAWANPGGRICVI 251

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLEDR+VK  F+  S   +    +      H  +    TKK +  T E++  N R+R
Sbjct: 252 AYHSLEDRIVKHVFSELSQGCICPPDLPVCVCGHVPIVDVKTKKPLTATSEEITQNPRAR 311

Query: 308 SAKLRAGMR 316
           SA +R  ++
Sbjct: 312 SALMRVAVK 320


>gi|154509049|ref|ZP_02044691.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798683|gb|EDN81103.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC
           17982]
          Length = 335

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 12/317 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
                HVPVLL + + +L P    PG V++D T G GG++    +   G  VI +DRDP 
Sbjct: 14  PASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQ 73

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+      +  +  +F     T+  +   V ++      VDGV+ DLGVSS+Q+D  DRG
Sbjct: 74  AIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRG 133

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ K  PLDMRM   SG SA+D++  ++  +L RIL   GEEK A RIA  I++RR  A
Sbjct: 134 FAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDA 193

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P   T +L  +I++ +    +    +PA R+FQALR+ VN+E+  L + L  A  +L+ G
Sbjct: 194 PITRTGELVGIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVG 253

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+V S+ SLEDR+VK      S         +  +      + +TK      Q +   
Sbjct: 254 GRLVVESYQSLEDRIVKDVLRRGSTSAAPPGLPVIPDEMAPSLRLLTKGANKADQAEQDH 313

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RS S +LR      E
Sbjct: 314 NPRSASVRLRGAELIRE 330


>gi|149193782|ref|ZP_01870880.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus
           TB-2]
 gi|149135735|gb|EDM24213.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus
           TB-2]
          Length = 302

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            HVPVLL + + L         +D T G GG+S +  +   +  +I +D+D  A++  + 
Sbjct: 4   PHVPVLLNETVNLYKNIKKGYFIDCTLGFGGHSEAILEKYPHIKLIGIDQDIDALNFAKN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ Y  +        S+    +    + G++ D+GVSS Q+D  +RGF+F  +      
Sbjct: 64  RLKKYANRVEFINKRASEALSELKGLNIAGILADIGVSSFQLDNKERGFTFDSNTLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                 SA DV+N  +   L  I     E ++  +IA  I    ++ P  + ++LS ++ 
Sbjct: 124 NKNQEFSAKDVINFYDKNSLEEIFKKYAESRKYKKIADLI---IKNRPINSNKELSEILM 180

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           +    +K          FQA+RI VNNE+ EL + L  +E     G +L +++FHSLEDR
Sbjct: 181 QAGIKNK----KDLAPIFQAIRIEVNNELNELEKILDLSEDIAIDGTILGIITFHSLEDR 236

Query: 257 LVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +VK  F   + + +     I      +    + +TKK +  + E++  N RSRSAKLR
Sbjct: 237 IVKNRFKEWAKRCICPDEAIKCECGGNNQKGKILTKKPITASNEEIKKNPRSRSAKLR 294


>gi|89902202|ref|YP_524673.1| S-adenosyl-methyltransferase MraW [Rhodoferax ferrireducens T118]
 gi|122996777|sp|Q21SW1|RSMH_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89346939|gb|ABD71142.1| methyltransferase [Rhodoferax ferrireducens T118]
          Length = 309

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 163/314 (51%), Gaps = 21/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGS---NVIALD 65
            H  VLL + +  L   P           +V +DATFG GG+SR      +    +IA D
Sbjct: 2   THTTVLLNEAVDALFCNPDATADASATGAQVYVDATFGRGGHSRLILSRMTPTDRLIAFD 61

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +D  A+         +  +FS+    FS L +  P   V GV+ DLG+SS QID   RGF
Sbjct: 62  KDAEALVEAGNI---HDSRFSIRHQGFSHLDELPPA-SVAGVLLDLGISSPQIDNPARGF 117

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM    GIS +  +  A  + +  ++   GEE+ A  IA AIV RRQ   
Sbjct: 118 SFRFEGPLDMRMDTTRGISVAQWLANAETEKIAEVIRDYGEERFAGPIAKAIVARRQERG 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             ++    + +      ++    +PATR+FQA RIF+N E+EEL Q L ++   L  GG 
Sbjct: 178 PISSTTELAQLVADTVKTREPGQNPATRTFQAFRIFINAELEELQQALAASLLVLAPGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F A  S  V   R    +       +++ +  + P+  +V+ N 
Sbjct: 238 LVVISFHSLEDRIVKQFIAQHSRDV-YDRRAPFAPPKVMQLKALAR--LRPSAAEVSANP 294

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA +R   RT 
Sbjct: 295 RARSAIMRVAQRTA 308


>gi|332976677|gb|EGK13517.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Psychrobacter sp. 1501(2011)]
          Length = 347

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 176/347 (50%), Gaps = 34/347 (9%)

Query: 10  SSAIHHTIGD----HVPVLLEKVIALL---------------NPAPGKVILDATFGAGGY 50
           S+A + +       H  VLL + +A +               +P    + +DATFG GG+
Sbjct: 7   SAAANPSSPKADFSHETVLLYETVAAVLGKNPTKKSSKATDSDPKVSGIFVDATFGRGGH 66

Query: 51  SRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GV 104
           S+   +       +   D+DP A++  +E       + ++   +F+ +   + +     V
Sbjct: 67  SKLLLESLSDDGQLFVFDKDPEAIAVAEEI-AKSDNRVTVVHDSFANITHCLNEHGITQV 125

Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGIL 163
           +G++ DLGVSS Q+D G RGFSF + G +DMRM    G S  + +   + ++L  +L   
Sbjct: 126 NGIMADLGVSSPQLDDGSRGFSFMRDGAIDMRMDTSRGQSVGEWLETVDEEELANVLYDF 185

Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNN 223
           GEE+ + RIA AI +  +   + +T +L+ +I++     +  + HPAT+SFQA+RIF+NN
Sbjct: 186 GEERHSRRIARAIKQMER---YTSTLELAEVIKQAHPKWQKGK-HPATQSFQAMRIFINN 241

Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHP 282
           E+ ++   L+ +   L   G L V+SFHSLEDR +K+F    S G+     ++      P
Sbjct: 242 ELGDIDSFLQQSLTLLAPEGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPVRP 301

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329
             F    +  + P++ +V+ N RSRSA LR   RT        S +H
Sbjct: 302 RYFSKPKR--IAPSKAEVSVNNRSRSAWLRVATRTDTPYNNAPSELH 346


>gi|288919045|ref|ZP_06413386.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f]
 gi|288349585|gb|EFC83821.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f]
          Length = 327

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 179/313 (57%), Gaps = 10/313 (3%)

Query: 19  DHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
            H PVL E+V+ LL PA   PG +++D T G GG+S +  +      +I LDRDP A++ 
Sbjct: 4   THTPVLTERVVELLTPAMQAPGAIVVDTTVGLGGHSLALLEAFPRARLIGLDRDPRALAY 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + D   +  L    + QL D +       V+G++FDLGVSSMQ+D  +RGF++ + 
Sbjct: 64  SRHRLADLGTRVDLVHMVYDQLPDALSGLGVAEVNGILFDLGVSSMQLDMDERGFAYSRD 123

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM    G +A+DV+N  +V  LTRIL   GEE+ A RIA A+V  RQ+APF T+ 
Sbjct: 124 APLDMRMDQERGPTAADVLNTYDVDSLTRILRNYGEERFARRIAQAVVSARQTAPFTTSA 183

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +  + +    +PA R+FQALRI VN E++ L + L +A  AL  GG L+V+
Sbjct: 184 RLVDLIRDAIPAAARRTGGNPAKRTFQALRIEVNTELDVLERALPAAFDALAVGGRLVVL 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK+    R+   +     +  +      + +T+     + +++  N R+ S
Sbjct: 244 SYHSLEDRLVKRSLGPRAVPAVPPDMPVIPDEARPTLRWLTRGAEPASDQEIERNARAGS 303

Query: 309 AKLRAGMRTVERS 321
            +LRA  R     
Sbjct: 304 VRLRAVERVAAEP 316


>gi|291563991|emb|CBL42807.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SS3/4]
          Length = 311

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
            I +H  VLL + +  LN  P  + +D T G GG++    +       +I +D+D  A++
Sbjct: 1   MIFEHKSVLLMETVDSLNVKPDGIYVDGTLGGGGHAYEVSRRLGEKGRLIGIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  +K++ ++ ++ +  +++ + +   + VDG+  DLGVSS Q+D  DRGFS+++
Sbjct: 61  AATERLLPFKDKVTIVRSNYKNIREVLFNLGIEKVDGIYLDLGVSSYQLDTADRGFSYRE 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +  +A+D+VN  +  +L RI+   GE++ A  IA  IV+ R+  P +TT
Sbjct: 121 DAPLDMRMDQRNDKTAADIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVREREIHPIETT 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I+  +    +    HPA R+FQA+RI +N+E++ L   + +    L  GG L +
Sbjct: 181 LQLAEIIRGAIPAKIRAEGGHPAKRTFQAIRIELNHELDVLNDSIDTMIDLLNPGGRLSI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F +     +             +  + +T+K +VP+ E++  NRRS
Sbjct: 241 ITFHSLEDRIVKTRFRTNENPCICPPDFPVCVCGRKSKGRVVTRKPIVPSDEELEENRRS 300

Query: 307 RSAKLRAGMRT 317
           +S+KLR   R+
Sbjct: 301 KSSKLRVFERS 311


>gi|109947477|ref|YP_664705.1| S-adenosyl-methyltransferase MraW [Helicobacter acinonychis str.
           Sheeba]
 gi|122973304|sp|Q17XC0|RSMH_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109714698|emb|CAJ99706.1| S-adenosyl-methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 308

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V +D T G GG+S++      +  +I +D+D  A
Sbjct: 1   MQEIENLHKSVLLQEVLQAFAPLEKGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++  + +    F++      +     + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGCYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                       S ++A  V+N   +  L +I    G  K+  +IAH IV+RR   PF+ 
Sbjct: 121 HSHALDMRMDLESELNAQKVINSYCIVALEKIFKDYGAIKEYKKIAHHIVERRAKKPFKD 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A K    G +L V
Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAIRIEVNRELEELKEFLQDAMKLK--GAILCV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLED LVK  F + +   +            + A+ + +TKK + P+ E++  NRR
Sbjct: 236 ISFHSLEDALVKNAFKNYAKNCICDALNFKCTCSNNHALGEILTKKPITPSLEEIKHNRR 295

Query: 306 SRSAKLRAGM 315
           SRSAK+R   
Sbjct: 296 SRSAKMRVFQ 305


>gi|108800230|ref|YP_640427.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. MCS]
 gi|119869358|ref|YP_939310.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS]
 gi|122976793|sp|Q1B6W3|RSMH_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825146|sp|A1UI62|RSMH_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108770649|gb|ABG09371.1| methyltransferase [Mycobacterium sp. MCS]
 gi|119695447|gb|ABL92520.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS]
          Length = 324

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 18/318 (5%)

Query: 19  DHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +H+PVLL++ + LL P      P     V++DAT GAGG++  F       ++I LDRDP
Sbjct: 2   EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++ SL +  +  + D +       V G +FDLGVSSMQ+D  +RGF
Sbjct: 62  QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM     ++A+DVVN    KD+TRIL   GEE+ A+RIA  IV+RR   P
Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT +L  L+   +    +    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAVPAALAALETGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK  FA+ +         +    H   F ++T+     T E++  N
Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298

Query: 304 RRSRSAKLRAGMRTVERS 321
            RS   +LRA  +   R 
Sbjct: 299 PRSAPVRLRALEKVAGRP 316


>gi|328906989|gb|EGG26755.1| S-adenosyl-methyltransferase MraW [Propionibacterium sp. P08]
          Length = 346

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP-APGK--VILDATFGAGGYSRSFCKMGS--NVI 62
            M++    +   HVPV+  +++ LL P       V +D T G GG++ +         ++
Sbjct: 11  LMATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLV 70

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++     ++ + ++  L  A   +L + + D     VD V+ DLG+SS+QID
Sbjct: 71  GIDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQID 130

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM    G +A+ V+N+++  DL RIL   GEEK A RI  AIV 
Sbjct: 131 EVNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVT 190

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A 
Sbjct: 191 ERDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRAL 250

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+++HSLEDR VK+ F             I   +  A F  +T+    P 
Sbjct: 251 DRLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPD 310

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++++ N RS SA+LR   R 
Sbjct: 311 ADEMSANPRSASARLRVIERV 331


>gi|326402227|ref|YP_004282308.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium
           multivorum AIU301]
 gi|325049088|dbj|BAJ79426.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium
           multivorum AIU301]
          Length = 313

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 137/308 (44%), Positives = 185/308 (60%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL E+ +A+L P    V LD TFG GGYS S  +     V A+DRDP A++ G    
Sbjct: 7   HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  L +  F  L   + D+GV  +   VFD GVSS Q+D   RGFSF+  GPLDM
Sbjct: 67  ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN     +L  IL   GEE+ + RIA AIV+RR + PF+TT DL+++I
Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   + + I PATRSFQALRI VN E+ E+ + L +A   L  GG L+ VSFHSLED
Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F  + +G V A     PS     A    F+++T+ VV P + + A N R+RSA+L
Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETAANPRARSARL 305

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 306 RGIERLAA 313


>gi|54114491|gb|AAV29879.1| NT02FT1003 [synthetic construct]
          Length = 305

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN  P  + + ATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLPESINDLNINPQGIYIHATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q          
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +       K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFH
Sbjct: 179 LAELILAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSRS
Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 297 AILRVVEK 304


>gi|315638233|ref|ZP_07893415.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21]
 gi|315481769|gb|EFU72391.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21]
          Length = 304

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 6/300 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL ++V  L       + LD T G GG+S +  KM    ++IA D+D  A+   +E
Sbjct: 4   PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++++  +  L+ + FSQ+ + +  K + G++ D+GVSS+ +D  +RGFS + +      
Sbjct: 64  RLKEFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSNFLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA DV+N  + + L  I  I GE K  + +A  I+K R      + ++L  ++ 
Sbjct: 124 DKSQSLSAFDVINTYSKEKLADIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILG 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T    KN +I  A  +FQALRI VN E+E L   L+  EKA     +L ++ FHSLEDR
Sbjct: 184 NT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK +F   +   +     I     A+  + + ++KK + P +E++  N RS  AK+RA 
Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRAF 301


>gi|329942720|ref|ZP_08291499.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10]
 gi|332287316|ref|YP_004422217.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC]
 gi|313847900|emb|CBY16895.1| putative S-adenosyl-methyltransferase [Chlamydophila psittaci RD1]
 gi|325506769|gb|ADZ18407.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC]
 gi|328814980|gb|EGF84969.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10]
 gi|328914560|gb|AEB55393.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci 6BC]
          Length = 298

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 159/314 (50%), Gaps = 25/314 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           MS+        H+PVL+ + ++L      K   D T GAGG++ +F     +++   A D
Sbjct: 1   MSATPS-----HIPVLVNECLSLFANRNPKFFCDVTVGAGGHAEAFLSEYPSIVSYDASD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A+S  +E +  + ++     A+F  L     +   DG++ DLGVSSMQ+D   RGF
Sbjct: 56  RDSAALSLAKERLEKFGDRVHFRHASFEDLSKDSKEHVYDGILADLGVSSMQLDNLSRGF 115

Query: 126 SFQ-KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ     LDMRM    GI+AS+V+N    ++L +I    GEE Q    A A+V  R+  
Sbjct: 116 SFQGDDHDLDMRMDVTKGITASEVLNTLREEELGKIFREYGEEPQWKNAASAVVHFRKRK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL     K     +   +IHP T  FQALR++VN E  +L   L SA + L  G
Sbjct: 176 KIITVRDLKDATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDLQLKVFLESAMRWLAPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G LI++SF S EDR VK FF                     +   +TKKVV+PT E+   
Sbjct: 236 GRLIIISFCSSEDRPVKWFFREAEKSG--------------LGTILTKKVVMPTYEETRK 281

Query: 303 NRRSRSAKLRAGMR 316
           N R RSAKLR   +
Sbjct: 282 NPRCRSAKLRCFEK 295


>gi|295116225|emb|CBL37072.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SM4/1]
          Length = 382

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 166/326 (50%), Gaps = 10/326 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H  VLL + +  LN  P  + +D T G GG++         G  +I LD+D  A++
Sbjct: 1   MTFSHTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ Y ++ ++ +  +  +++ +       VDG+  DLGVSS Q+D  +RGF++++
Sbjct: 61  AATERLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYRE 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                          +A D+VN  +  +L RI+   GE++ A  IA  IVK RQ    +T
Sbjct: 121 DDAPLDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIET 180

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +L+ +I+  +    +    HPA R+FQA+RI +N E++ L   + +  + L  GG L 
Sbjct: 181 AGELTEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLS 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F                     +  + +T+K ++P+ E+++ N+R
Sbjct: 241 VITFHSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKR 300

Query: 306 SRSAKLRAGMRTVERSIEDDSFVHLP 331
           S+SAKL    +   RS + ++F  L 
Sbjct: 301 SKSAKLECSKKQAIRSSKPEAFRGLK 326


>gi|34763068|ref|ZP_00144041.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887267|gb|EAA24365.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 331

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   +
Sbjct: 25  YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 84

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 85  KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 144

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 145 LDMRMNIEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 204

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 205 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 262

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+K
Sbjct: 263 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 322

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 323 LRILERI 329


>gi|289449724|ref|YP_003474673.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184271|gb|ADC90696.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 362

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 170/324 (52%), Gaps = 10/324 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M          HVPVLL + +  L+       +D T G  G+S +  +    G  + A D
Sbjct: 29  MREETRSLQFSHVPVLLTECLKALDLKANGTYVDCTAGGAGHSAAILQRLGSGGRLFAFD 88

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQ--ATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DP A       +   K   +     A F+ L++ +  +    VDG++ DLGVSS Q+D 
Sbjct: 89  KDPTARQAAAAKLAQVKTAATYELIAADFASLREELSKRNVFAVDGILADLGVSSPQLDT 148

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           G+RGF+++  GPLDMRM+   G +A+D++   +   LTRI+   GEE+ A+RIA A+VK 
Sbjct: 149 GERGFAYRLEGPLDMRMNPTCGRTAADILRLEDQATLTRIMREYGEERYAARIAAAVVKT 208

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R++ P   T +L  LI K V   ++  + HPA R FQ+LRI VN+E+  L + L+ A   
Sbjct: 209 RETKPLTGTGELVDLICKAVPAAARREKQHPAKRVFQSLRIAVNDELGALRKLLQQAPGL 268

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK  G L++++FHSLEDRLVK+ F            +       +  ++     +V  + 
Sbjct: 269 LKPDGHLVIITFHSLEDRLVKQAFRRWERPCRCPSGLPCVCGLASQGKADPPHGLVAGKT 328

Query: 299 DVAFNRRSRSAKLRAGMRTVERSI 322
           ++A N RSRSA++R   R     +
Sbjct: 329 ELAENPRSRSARVRVFRRNANPPL 352


>gi|148651949|ref|YP_001279042.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1]
 gi|262825202|sp|A5WBQ1|RSMH_PSYWF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148571033|gb|ABQ93092.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1]
          Length = 339

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 107/335 (31%), Positives = 167/335 (49%), Gaps = 24/335 (7%)

Query: 12  AIHHTIGDHVPVLLEKVIAL------LN---PAPGKVILDATFGAGGYSRSFCKMGS--- 59
           +   +   H  VLL + +A       LN   P    + +DATFG GG+S+      S   
Sbjct: 11  STSKSEFSHETVLLFETVAAVLGEKSLNDNTPKHDGIYVDATFGRGGHSKLLLNYLSDDA 70

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSM 116
            +   D+DP A+    + +    ++  +   +F+ +   +  +    VDG++ DLGVSS 
Sbjct: 71  KLFVFDKDPEAIDVAND-LAAEDKRVIVVHDSFADMTQCLNSRGVSQVDGIMADLGVSSP 129

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D G RGFSF + G +DMRM    G    + +   + + L  +L   GEE+ + RIA A
Sbjct: 130 QLDDGSRGFSFMRDGAIDMRMDTSRGQPVGEWLQTVDEETLADVLYDFGEERHSRRIARA 189

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I    Q   + +T +L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   L  +
Sbjct: 190 IKGMTQ---YTSTLELAEVIKQAHPKWQKGK-HPATQSFQAMRIFINNELGDIDSFLAQS 245

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVV 294
              L   G L V+SFHSLEDR +K+F    S G+     ++      P  F    +  + 
Sbjct: 246 LTLLAPQGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPQRPRYFSKPKR--IA 303

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329
           P++ +V  N RSRSA LR   RT      D S  H
Sbjct: 304 PSKAEVTVNNRSRSAWLRVATRTDTPYNTDPSPQH 338


>gi|86608801|ref|YP_477563.1| S-adenosyl-methyltransferase MraW [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502541|sp|Q2JLV1|RSMH_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86557343|gb|ABD02300.1| S-adenosyl-methyltransferase MraW [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 319

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 125/314 (39%), Positives = 164/314 (52%), Gaps = 35/314 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H  VL E+V+A L P  G + LD T G GG+S +  + G + V+ LDRDP A+   Q   
Sbjct: 24  HDSVLTEEVMAYLQPQGGGIFLDVTLGGGGHSLALLRGGAARVVGLDRDPAALQAAQARF 83

Query: 79  RD---YKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   +  L+   F+           +       DG+V DLGVSS Q+DC +RGFSF
Sbjct: 84  AAEGIPGSRIQLWHLNFADFDLQQHGFRDEQGQGIPFDGIVADLGVSSPQLDCPERGFSF 143

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  GPLDMRM  S    +A+D VN   V++L  I    GEE+ A RIAH I + R   P 
Sbjct: 144 RGEGPLDMRMDPSAAQETAADWVNHRPVEELIEIFTRYGEERFARRIAHHIEQAR---PL 200

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+ ++ + V   ++  RIHPATR FQALRI VN E+E L   L  A   LK GG 
Sbjct: 201 ATTTQLAQVVWQAVPPAARRGRIHPATRVFQALRIAVNRELEALETLLAQAPTWLKPGGR 260

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDRLVK  F                      +Q +T K + P++ +   N 
Sbjct: 261 LAVISFHSLEDRLVKWAFRR-----------------DPRWQVLTPKPLSPSELERQRNP 303

Query: 305 RSRSAKLRAGMRTV 318
           R+RSAKLR   R+ 
Sbjct: 304 RARSAKLRVAARSS 317


>gi|329940950|ref|ZP_08290230.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329300244|gb|EGG44142.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 310

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L + + LL P    PG V++D T G GG+S +         ++ALDRD  A+    E +
Sbjct: 2   MLHRCLDLLAPALERPGAVVVDCTLGLGGHSEALLARFPEVRLVALDRDKEALRLSAERL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y E+ +L  A + +L + +       V GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 62  APYGERATLVHAVYDELPEVLDRLGLARVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   +G SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF T+  L  +
Sbjct: 122 RMDQSTGTSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREREPFTTSARLVEV 181

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +  + K    +PA R+FQALRI VN E+  L + + +A +AL  GG + V+++HSL
Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRALDVGGRIAVLAYHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 242 EDRLVKQVFAAGAAGTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301

Query: 314 GMRTVERS 321
            +R  E +
Sbjct: 302 ALRIREDA 309


>gi|315604430|ref|ZP_07879496.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314136|gb|EFU62187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 341

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 12/326 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG 58
             ++   ++ A       HVPVLL + + +L PA   PG V++DAT G GG++    +  
Sbjct: 7   SVRASSYLADASRPARERHVPVLLSECLDMLAPAIGAPGAVLVDATLGMGGHTEGALERF 66

Query: 59  SNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDL 111
            ++  I +DRDP A++   + +  +  +F    AT+  +   + ++   G     ++ DL
Sbjct: 67  EDLTVIGIDRDPQAIALASDRLERFGARFRAVHATYDHIDRVIEEQCGPGSRVDGILMDL 126

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS+Q+D  DRGF++ K  PLDMRM  + G SA+D++  A+  ++ RIL   GEE+ A 
Sbjct: 127 GVSSLQLDEADRGFAYSKDAPLDMRMDPTTGPSAADLLASASEGEIVRILRTYGEERFAP 186

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELA 229
           RIA  I++RR  AP   T +L  +++  +    + +  +PA R+FQALR+ VN+E+  L 
Sbjct: 187 RIARLIIRRRDEAPITRTGELVDIVRSAIPAPARRSGGNPAKRTFQALRVAVNDELTILE 246

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L  A  +L+ GG L+V ++ SLEDR+VK      +         I  +      + +T
Sbjct: 247 RALPRALASLRVGGRLVVEAYQSLEDRIVKDVLRRGATSAAPPGLPIVPDEMAPSLRLLT 306

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K      Q +   N RS S +LR   
Sbjct: 307 KGANRADQAEQDHNPRSASVRLRGAE 332


>gi|239940578|ref|ZP_04692515.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987061|ref|ZP_04707725.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444013|ref|ZP_06583403.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346960|gb|EFE73864.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 313

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 13/312 (4%)

Query: 24  LLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           +L++ + LL PA      P  V++D T G GG+S +         +IALDRD  A+    
Sbjct: 2   MLQRCLDLLAPALQDPAHPDPVVVDCTLGLGGHSEALLAAFPTARLIALDRDKEALRLSG 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ +L  A + +L + +       V GV+FDLGVSSMQ+D  DRGF++ +  P
Sbjct: 62  ERLAPYGDRATLVHAVYDELPEVLERLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDAP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +G+ A++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  L
Sbjct: 122 LDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSARL 181

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+  +  + K    +PA R+FQALRI VN E+  L + + +A  +L  GG + V+S+
Sbjct: 182 VELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLAVGGRIAVLSY 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E+VA NRR+  A+
Sbjct: 242 HSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEEEVAENRRAAPAR 301

Query: 311 LRAGMRTVERSI 322
           LR   R  E   
Sbjct: 302 LRGAQRIREEER 313


>gi|311741520|ref|ZP_07715344.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303690|gb|EFQ79769.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 346

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 167/319 (52%), Gaps = 20/319 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ E++  LL P         V++DAT GAGG++R F +      VI +DRD  A+ 
Sbjct: 16  HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPEARVIGVDRDKQALR 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSMQIDCG 121
              E +  Y ++F    A F +L   + +   D             +FDLGVSSMQ+D  
Sbjct: 76  NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARSVGIAGALFDLGVSSMQLDQA 135

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM    GI+A+DV+N  +  DL R+L   G+E+ A +IA A++K R
Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYSHGDLARVLKTYGDERFAGKIASAVLKER 195

Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF  +  L  L+   +   ++    HPA R+FQALR+ VN E+E +   L    +AL
Sbjct: 196 DKEPFVNSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ SLEDR+VK  F   +         +        F+ +T+     ++E+
Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFKIVTRGAEKASEEE 315

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           VA N R+ S ++RA  R  
Sbjct: 316 VAENSRAASVRVRAIERLE 334


>gi|228469401|ref|ZP_04054415.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3]
 gi|228309085|gb|EEK17715.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3]
          Length = 310

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
            T   H  VL E  + LL   P  + +D T G GG+SR+  +        I LD+DP A+
Sbjct: 2   STKLYHTAVLCEDSLNLLVTTPSGLYVDVTMGGGGHSRALLERLSPEGRCIGLDQDPDAM 61

Query: 72  SCGQETMRDYKEQFSLFQATF-SQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +   +   D +  F      +  Q  DY      VDG++ DLGVSS   D  +RGFSF+ 
Sbjct: 62  ANAPQ---DSRYHFVATNFRYLGQWLDYWGLAGEVDGILADLGVSSHHFDSEERGFSFRY 118

Query: 130 SG-PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                DMRM+  SG++A D++   + + L  IL   GE   A RIA  +V  R      T
Sbjct: 119 EEAMPDMRMNSRSGVTARDLLLSYSEEQLADILYYYGELHDARRIAALLVSHRAVGYP-T 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
              L  ++   +        +  +R FQALRI VN+E+  L Q L  + + LK GG + +
Sbjct: 178 IASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKPGGRIAI 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDR+VK+FF   S +  +        + PA  + +TKK + P+ +++A N R+R
Sbjct: 238 ISYHSLEDRMVKEFFRLGSFEQPSEALAGMPLSKPAPLRVVTKKAITPSADEIADNNRAR 297

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 298 SAKLRVAE 305


>gi|269127144|ref|YP_003300514.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM
           43183]
 gi|268312102|gb|ACY98476.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM
           43183]
          Length = 337

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 170/310 (54%), Gaps = 14/310 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP----APGK---VILDATFGAGGYSRSFCKMGS-- 59
           M  +       H+PVLL++V++LL P    AP     + +DAT G GG++ +  +     
Sbjct: 1   MQDSACAAQAGHIPVLLDRVLSLLAPAVESAPAGRDPLYVDATLGMGGHAEAMLQAHPRL 60

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSM 116
            +I LDRDP A+      +  + ++  L  A + +L      + +   + ++FDLGVSS 
Sbjct: 61  RLIGLDRDPSAIERAGRRLARFADRVRLVHAVYDELPRVLAELGEPHAEAILFDLGVSSP 120

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF++    PLDMRM  +   +A+DVVN    ++L RIL   GEE+ A RIA A
Sbjct: 121 QLDEAERGFAYSYDAPLDMRMDPTQPLTAADVVNGYPPEELARILREYGEERHARRIAAA 180

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R+ AP ++T  L+ L+++ +   ++ +  +PA R+FQALRI VN E+    + L +
Sbjct: 181 IERERRRAPLRSTGRLAELVRQAIPAPARRSGGNPAKRTFQALRIEVNGELAIWERALPA 240

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A +AL  GG + V+S+HSLEDR+ K+   + S         +    H   F+ +T+    
Sbjct: 241 ALQALPVGGRVAVLSYHSLEDRITKRVLTACSTDTTPPGLPVSLPEHRPTFRLLTRGAET 300

Query: 295 PTQEDVAFNR 304
           P +E++  N 
Sbjct: 301 PGEEEITANP 310


>gi|172040893|ref|YP_001800607.1| S-adenosyl-methyltransferase MraW [Corynebacterium urealyticum DSM
           7109]
 gi|263446151|sp|B1VHD2|RSMH_CORU7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171852197|emb|CAQ05173.1| S-adenosyl-methyltransferase [Corynebacterium urealyticum DSM 7109]
          Length = 353

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 108/352 (30%), Positives = 186/352 (52%), Gaps = 28/352 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGSN-- 60
           ++    +   HVPV+ ++++ L+        AP + +I+D T GAGG++ +F +   N  
Sbjct: 4   NTPHDPSSPGHVPVMRQRMVELVGIGVTAGSAPAQPIIVDGTLGAGGHTEAFLEAYPNAI 63

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY-------------VPDKGVDGV 107
           VI LDRDP A++  +  +  + ++F  +Q  F  + +              + ++G+ G 
Sbjct: 64  VIGLDRDPNALAEARARLERFGQRFFSYQTRFDGIGEALEHFSEDPDFPVDIREQGISGF 123

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEE 166
           +FDLGVSSMQ+D  DRGF+++   PLDMRM  S   +A++++N     +L RIL   G+E
Sbjct: 124 LFDLGVSSMQLDQEDRGFAYRVDAPLDMRMDPSSRLTAAEILNTYEHGELARILKRYGDE 183

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEI 225
           K A +IA A+++ R+  PF+ +  L  L+  T+  + +    HPA R+FQALRI VN E+
Sbjct: 184 KFAGKIASAVIREREKQPFENSARLVDLLYATIPAAARRTGGHPAKRTFQALRIEVNAEL 243

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   + +A   L+  G  + +S+ SLED++VK+     +         +        F
Sbjct: 244 ESLELVIPAAFSWLRVDGAGVFMSYQSLEDKIVKQQLKGMTESSTPPGLPVELPGTEPEF 303

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337
           + +T+     +++++A N RS   ++RA  R    +    S    PR P +S
Sbjct: 304 ELLTRGAEKASEQEIAENSRSAPVRVRAARRIGAHA----SGAGGPRYPLVS 351


>gi|241765142|ref|ZP_04763130.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN]
 gi|241365221|gb|EER60068.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN]
          Length = 309

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 163/310 (52%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H  VLL++ +  L    G       +DATFG GG+SR          +++A D+DP A+ 
Sbjct: 7   HTTVLLDEAVDALLGGAGAAPAGTWVDATFGRGGHSRRILLRLGPQGHLVAFDKDPEAIH 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +      V GV+ DLGVSS QID   RGFSF+  GP
Sbjct: 67  EATRI---TDARFSIRHEGFRHLAELP-AGSVAGVLMDLGVSSPQIDSPGRGFSFRFDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S +  +  A V+ +  ++   GEE+ A  IA AIV RR+      T   
Sbjct: 123 LDMRMDTTRGESVAQWLATAEVQQIAEVIRDYGEERFAGPIAKAIVARREERGPLATTAE 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQALRIF+N E+EEL Q L ++   L+ GG L+V+SFH
Sbjct: 183 LADLVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALEASLSVLQPGGRLVVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R      A P V + +    + P+  +VA N R+RSA +
Sbjct: 243 SLEDRIVKQFIAQHSKEVYDRRAPF---APPKVMKLVALDRIKPSAAEVAANPRARSAIM 299

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 300 RVAERTEAPA 309


>gi|71891921|ref|YP_277651.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|88909187|sp|Q493Q9|RSMH_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71796027|gb|AAZ40778.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 329

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 181/321 (56%), Gaps = 19/321 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + +    H  VLL + I  LN     + +D TFG+GG+S+           ++A+D+D  
Sbjct: 12  MFYIHYSHKSVLLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLL 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           AV  G+    +  ++F++  ++FS++ ++V +      VDG++ DLG+S+ QI+   RGF
Sbjct: 72  AVKIGKHI-AEQDDRFTIIHSSFSKMINHVKNIGLIGSVDGILLDLGISTFQINDCSRGF 130

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + G LDMRM   SGISA++ +++A+ +++T +L   GEE+ A  IA  +V +R+  P
Sbjct: 131 SFMQDGLLDMRMDISSGISAAEWLSKASQENITWVLKNFGEERFAKNIAKILVSKRRYTP 190

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              +  LS LI   +   +N   HPAT+SF A+R+F+NNE+EE+ Q L+ A   L   G 
Sbjct: 191 IIRSIVLSKLICDAI-PHRNMNKHPATKSFLAIRMFINNELEEIMQVLKDALIILSPRGR 249

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQ 297
           L+V+SF+SLEDRLVK F    S  +     +  +N             ++I K  + P++
Sbjct: 250 LVVISFNSLEDRLVKYFIREHSCALSIPPKLPLTNNQIFSKYKNKCQLKNIGK--LTPSK 307

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           +++  N R+RSA LR   +  
Sbjct: 308 QEIKRNIRARSAILRCAEKLA 328


>gi|269956076|ref|YP_003325865.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304757|gb|ACZ30307.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM
           15894]
          Length = 351

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 182/313 (58%), Gaps = 11/313 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
            T   H+PVLLE+ + LL PA   PG V++D T G GG++    +   +V  + +DRDP 
Sbjct: 8   STADRHLPVLLERCVDLLAPALAEPGSVLVDCTLGMGGHTEGVLERLPHVHVVGIDRDPQ 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGF 125
           A+      +  + ++F+   A + ++ D V     D GV GV+ DLGVSS+Q+D   RGF
Sbjct: 68  ALRLAAARLARFGDRFTPVHAVYDEIGDVVARLGYDDGVQGVLMDLGVSSLQLDEAGRGF 127

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM  + G +A+DV+N  +  +LTRIL   GEE+ A +IA +IV+RR   P
Sbjct: 128 AYAQDAPLDMRMDQTTGPTAADVLNTYDEHELTRILREYGEERFAGKIARSIVRRRAERP 187

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           ++ T +L  L++  +   ++    +PA R+FQALRI VN E+E L + + +A +AL  GG
Sbjct: 188 WERTAELVDLVRACIPAATRKTGGNPAKRTFQALRIEVNGELEVLERAVPAAIEALAVGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V S+HSLEDR+VK+  A  +         +    H A  +++T+        ++A N
Sbjct: 248 RIVVESYHSLEDRIVKRAIARGTTSSAPPGLPVEPETHRAYLEALTRGAEEADDAELARN 307

Query: 304 RRSRSAKLRAGMR 316
            RS S +LRA  R
Sbjct: 308 PRSASVRLRAAAR 320


>gi|254459393|ref|ZP_05072814.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD
           1]
 gi|207084006|gb|EDZ61297.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD
           1]
          Length = 307

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 159/308 (51%), Gaps = 15/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL  +V+         +I+D T G GG+S    +   N  +IA+D+D  A+    +
Sbjct: 5   PHIPVLYREVVDTFKDIKNGIIIDCTMGYGGHSSMILESNPNIELIAIDQDQTAIDFSTK 64

Query: 77  TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + ++ ++ S+ +  FS     +        + GV+ D+GVSS+Q+D  DRGFS++    
Sbjct: 65  RLEEFGDRVSIRKGRFSSVIKDIIAEYGVDKIRGVLADIGVSSLQLDQKDRGFSYESENL 124

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                  + +SA +VVN+ +  +L  IL   GE +   +IA AIV  R   PF + ++LS
Sbjct: 125 DMRMDKDAPLSAKNVVNEYSNSELENILLEYGELRNYKKIASAIVNSR---PFTSAKELS 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
              +  +   K  +IHPAT   QA+RI VN+E+ EL   L+S E +      + V+SFHS
Sbjct: 182 ERTKHLMPHGK--KIHPATLLMQAIRIEVNDELGELKSLLQSIEDSQFTDATVAVISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ +   +   +     +        ++ + ++KK +    +++  N RSRSAK
Sbjct: 240 LEDRIVKQTYTKWTKNCICPDEAMRCTCSRDNSLGRILSKKPITAQDDELKENPRSRSAK 299

Query: 311 LRAG--MR 316
           +R     R
Sbjct: 300 MRVFHYER 307


>gi|57242049|ref|ZP_00369989.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis
           RM3195]
 gi|57017241|gb|EAL54022.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis
           RM3195]
          Length = 304

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 160/300 (53%), Gaps = 6/300 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL ++V  L       + LD T G GG+S +  KM    ++IA D+D  A+   +E
Sbjct: 4   PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +R++  +  L+ + FSQ+ + +  K + G++ D+GVSS+ +D  +RGFS + +      
Sbjct: 64  RLREFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSNFLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA DV+N  + + L  I  I GE K  + +A  I+K R      + ++L  ++ 
Sbjct: 124 DKSQSLSAFDVINTYSKEKLANIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILS 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T    KN +I  A  +FQALRI VN E+E L   L+  EKA     +L ++ FHSLEDR
Sbjct: 184 NT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK +F   +   +     I     A+  + + ++KK + P +E++  N RS  AK+RA 
Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRAF 301


>gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099]
 gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099]
          Length = 338

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 137/285 (48%), Positives = 188/285 (65%), Gaps = 3/285 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+  L PA   +I+D TFGAGGY+R+    G++V+A+DRDP A++ G++   
Sbjct: 18  HIPVLLGEVLEALAPAERDIIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRDLEV 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L QA FS L ++V     DGVV D+GVSSMQ+D  +RGFSF+  GPLDMRM+ 
Sbjct: 78  QSGGRLRLVQAPFSTLDEHVES--ADGVVLDIGVSSMQLDQAERGFSFRFDGPLDMRMAQ 135

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L+  I+  +
Sbjct: 136 AGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKKPFEGTLELADAIETHI 195

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
             +  ++IHPATR FQALRI+VN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 196 GRAPKDKIHPATRVFQALRIYVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRIVK 255

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +F A R+      RH+  + A  A F+      V     +VA N 
Sbjct: 256 RFIADRADVATGSRHLPEAQARTATFRKAGGG-VTAGDAEVAANP 299


>gi|162449928|ref|YP_001612295.1| methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|262826606|sp|A9FI25|RSMH_SORC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161160510|emb|CAN91815.1| methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 315

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 173/303 (57%), Gaps = 22/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           HV VL  +V+A L+P    V +DAT GAGG++ +  +  G+ VI +DRD  A++  +  +
Sbjct: 23  HVSVLGREVLAALSPVSEGVYVDATLGAGGHTATILETPGARVIGIDRDERALAIARARL 82

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               ++ +     FS+++ ++       VDG++ D+GVSSMQ+D   RG SF+  GPLDM
Sbjct: 83  ARAGDRVTYVHGEFSEIERHLAALGVPQVDGLLADIGVSSMQLDDPGRGMSFRAEGPLDM 142

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    G +A +++ + + ++L  ++   GEE+++ R+A  I +   S    TT DL   
Sbjct: 143 RMDSSRGETALELIERLSDEELADLIYRYGEERRSRRVARCIKQAADSGELVTTLDLRRA 202

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + + V  ++   + PATR+FQALRI VN E+++L   L +A + +  GG+L V+SFHSLE
Sbjct: 203 VVRAVGPARIGGVDPATRTFQALRIAVNGELDQLEALLEAAPRIIAPGGVLAVISFHSLE 262

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+                     P V++ +TKK V    ++V  N R+RSAKLRA 
Sbjct: 263 DRIVKRALRE-----------------PEVWEPLTKKPVTAGDDEVEGNPRARSAKLRAA 305

Query: 315 MRT 317
            R 
Sbjct: 306 RRV 308


>gi|256832298|ref|YP_003161025.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603]
 gi|256685829|gb|ACV08722.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603]
          Length = 334

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 175/314 (55%), Gaps = 10/314 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVIAL--DRDP 68
                 H+PVL ++ + L+ PA   P  + +DAT G GG++R+  +   NVIA+  DRD 
Sbjct: 8   SPASRRHIPVLRDRCLELMAPALNSPQALYVDATLGMGGHTRAVLEAFPNVIAIGIDRDA 67

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A++   E +  + ++F     T+  +   + + G      ++ DLGVSS+QID  +RGF
Sbjct: 68  QALALASERLESFGQRFRAVHTTYDNIYRVIHEAGFDGAQAILMDLGVSSLQIDERERGF 127

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++    PLDMRM  S  ++A+D++N  + K L  IL   GEE+ A RIA AIV+RR+  P
Sbjct: 128 AYAHDAPLDMRMDSSAPLTAADILNTYDEKRLATILKTYGEERFAPRIARAIVRRREERP 187

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           ++ + +L  LI++++  + +    +PA R+FQALRI VN E++ LA  L +A ++L  GG
Sbjct: 188 WERSGELVDLIRESIPAAARATGGNPAKRTFQALRIEVNEELDVLAHALPAAIESLVIGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S+HSLEDR+ K  F             I    H    +++T+      + ++  N
Sbjct: 248 RLLVESYHSLEDRMTKVEFTRGLQSSAPPDLPIEPETHRPYLRALTRGAEKADENELQSN 307

Query: 304 RRSRSAKLRAGMRT 317
            RS S +LRA  R 
Sbjct: 308 PRSASVRLRAIERV 321


>gi|296273435|ref|YP_003656066.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM
           7299]
 gi|296097609|gb|ADG93559.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM
           7299]
          Length = 300

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 10/300 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL ++ + +        I+D T G  G+S    K  S   +I  D+D  A+   ++
Sbjct: 4   PHIPVLYKETLGVFENIDSGYIIDCTLGYAGHSEGLLKQNSNVKLICNDQDNEALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  + +  +  F  + +   +  + G++ D+GVSS+Q+D  DRGF F         
Sbjct: 64  RLEPFLNRATFNKGNFETVLNSFKEYDIRGILADIGVSSLQLDKEDRGFGFDSESLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                + AS VVN  +  +L R+    GE K+  ++A  IV  R     +          
Sbjct: 124 NQEQSLDASVVVNTYSQSELERVFKECGEVKEYKKVASLIVNNRPFTSAKELSTFI---- 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                    ++H AT  FQ +RI VN+E+  L +   S E+      L+ ++SFHSLEDR
Sbjct: 180 --AKNMHKGKLHAATLPFQGIRIEVNDELGVLERLFDSIEELKPKNCLIAIISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK +F   S   +    +         A+ + ITKK ++PT E++  N RSRS+KLR  
Sbjct: 238 IVKNYFKKWSKNCICPSDVMRCTCGNDNALGKIITKKPIIPTNEEIKVNPRSRSSKLRVF 297


>gi|293192321|ref|ZP_06609432.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309]
 gi|292820236|gb|EFF79230.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309]
          Length = 335

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 12/317 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
                HVPVLL + + +L P    PG V++D T G GG++    +   G  VI +DRDP 
Sbjct: 14  PASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQ 73

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+      +  +  +F     T+  +   V ++      VDGV+ DLGVSS+Q+D  DRG
Sbjct: 74  AIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRG 133

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ K  PLDMRM   SG SA+D++  ++  +L RIL   GEEK A RIA  I++RR  A
Sbjct: 134 FAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDA 193

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P   T +L  +I++ +    +    +PA R+FQALR+ VN+E+  L + L  A  +L+ G
Sbjct: 194 PITRTGELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVG 253

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+V S+ SLEDR+VK      S         +  +      + +TK      Q +   
Sbjct: 254 GRLVVESYQSLEDRIVKDVLRCGSTSAAPPGLPVVPDEMAPSLRLLTKGANKADQAEQDH 313

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RS S +LR      E
Sbjct: 314 NPRSASVRLRGAELIRE 330


>gi|154250452|ref|YP_001411277.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum
           Rt17-B1]
 gi|263447049|sp|A7HNY7|RSMH_FERNB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154154388|gb|ABS61620.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum
           Rt17-B1]
          Length = 294

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 155/307 (50%), Gaps = 30/307 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75
           H+PVLL +V+  L   P  V +D T G GG++R+  +     G  VI +D D   +   +
Sbjct: 9   HIPVLLNEVVENLIWKPDGVYVDCTVGEGGHTRAIAERVLPYGGRVIGIDVDSEVLQIAE 68

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +  Y     F         L   +    VDG++ DLGVS+ Q+    RGFSF +  PL
Sbjct: 69  HNLLSYPNVQLFKFSYVELPVLLSLLQVHKVDGLLVDLGVSTYQLKAEGRGFSFNQDEPL 128

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A  +VN    + L  I+   GEE  + RIA AI    Q+ P QTT+ L 
Sbjct: 129 DMRMNLENNLTAYHIVNTYPEEKLADIIYNYGEENFSRRIARAI---VQNRPIQTTRQLV 185

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ + +    N + H AT++FQA+RI VN EIE +++ L  A   L +GG L ++SF
Sbjct: 186 EVIKRALPYKEVHNRKRHFATKTFQAIRIEVNKEIENISKFLEFAPDYLNSGGRLAIISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK  F                  +    + I    + PT  +VA N R+RSAK
Sbjct: 246 HSLEDRIVKHVFK-----------------NDKRLKPI-GDFISPTTFEVAENPRARSAK 287

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 288 LRLAERV 294


>gi|15643635|ref|NP_228681.1| S-adenosyl-methyltransferase MraW [Thermotoga maritima MSB8]
 gi|8134815|sp|Q9WZX6|RSMH_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4981407|gb|AAD35954.1|AE001753_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 299

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 107/315 (33%), Positives = 178/315 (56%), Gaps = 27/315 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H+PV++ +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   
Sbjct: 1   MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEV 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +E ++++ ++ SLF+ ++ +   L   +  + VDG++ DLGVS+ Q+   +RGF+F
Sbjct: 61  LRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTF 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM      +A  V+N+   ++L RI+   GEEK+ +R      K  ++ P  
Sbjct: 121 EREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFAR--RIARKIVENRPLN 178

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT DL   +++ +     +  + H AT++FQA+RI+VN E+E L + L+ AE  L  GG 
Sbjct: 179 TTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+SFHSLEDR+VK+ F +                     + +T+K V P++E++  N 
Sbjct: 239 IVVISFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENP 281

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS +LRA  R  E
Sbjct: 282 RARSGRLRAAERIEE 296


>gi|38234181|ref|NP_939948.1| S-adenosyl-methyltransferase MraW [Corynebacterium diphtheriae NCTC
           13129]
 gi|42559424|sp|P60395|RSMH_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|38200443|emb|CAE50131.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 339

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 172/319 (53%), Gaps = 23/319 (7%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL  ++  L+ P         VI+D T GAGG+S+ F +      VI LDRD  +++
Sbjct: 19  HVPVLRARMAELIAPKVTAMGSDAVIIDGTLGAGGHSKYFLESFPEARVIGLDRDTNSLA 78

Query: 73  CGQETMRDYKEQFSLFQATFSQ--------------LQDYVPDKGVDGVVFDLGVSSMQI 118
             +E ++++ ++F      F +              +     ++G+ G +FDLGVSSMQ+
Sbjct: 79  SARERLKEFGDRFLGIHTRFDRFAPKLEELAQSGNPIAATALEQGISGALFDLGVSSMQL 138

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF+++   PLDMRM  + GI+A+DV+N  +  +L RIL   G+E+ A +IA AIV
Sbjct: 139 DQAERGFAYRVDAPLDMRMDNTIGITAADVLNTYSHGELARILKTYGDERFAGKIASAIV 198

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R+  PF T+  L  L+  T+   ++    HPA R+FQALRI VN E+E L   L    
Sbjct: 199 REREKEPFDTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNRELESLENVLPEIT 258

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L  GG  + +S+ SLED++VK++F   S         +    +   F+ +T+     T
Sbjct: 259 QRLTTGGRAVFMSYQSLEDKIVKRYFVDISTSKTPPGLPMELPEYAPKFKVVTRGAEKAT 318

Query: 297 QEDVAFNRRSRSAKLRAGM 315
             ++  N R+ S ++RA  
Sbjct: 319 DAEIEENPRAASVRVRAIE 337


>gi|197101179|ref|NP_001126687.1| probable methyltransferase-like protein 15 [Pongo abelii]
 gi|75054772|sp|Q5R5T5|MET15_PONAB RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|55732357|emb|CAH92881.1| hypothetical protein [Pongo abelii]
          Length = 407

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 128/340 (37%), Positives = 188/340 (55%), Gaps = 39/340 (11%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVLHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAETLLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNAFDQQALASILRTYGEEKHAKKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           P   TQ L+S+         +Y  K       H AT++FQA+RIFVNNE+ EL  GL++A
Sbjct: 247 PITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAVRIFVNNELNELYMGLKTA 306

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281
           +K L+ GG L+ +SFHSLEDR++K+F                +  K   +     +    
Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEV 366

Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                P +++ I KKV+ P  +DV  N R+RSAKLRA ++
Sbjct: 367 SKRRAPLMWELIHKKVLSPQDQDVQDNPRARSAKLRAAIK 406


>gi|269219541|ref|ZP_06163395.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210783|gb|EEZ77123.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 335

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 173/314 (55%), Gaps = 11/314 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPVLLE+ + LL PA      V++DAT G GG+S +F +  +N+  + +DRDP A+   
Sbjct: 20  HVPVLLEECVNLLGPALTAEAPVMIDATLGMGGHSFAFLERFANLTVVGIDRDPEAIELA 79

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            E +  + ++F   +AT+  + D   +       D V+ DLGVSS+Q+D   RGFS+   
Sbjct: 80  GERLARFGKRFVAVRATYDDVSDVAAEYGRAGRADAVLMDLGVSSLQLDDEGRGFSYSGD 139

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  +G  +A+DV+  A+  +LTRIL   GEE+ ASRIA  I+  R + P + T 
Sbjct: 140 GPLDMRMDKTGGPTAADVLASADKAELTRILREYGEERFASRIAARILAARAAEPIERTG 199

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ +++  +    +    +P  R+FQALRI VN+E+  L + +  A +A+  GG + V 
Sbjct: 200 QLADIVRDAIPAPARRTGGNPCKRTFQALRIAVNDELALLRRAIPRAIEAIAVGGRIAVE 259

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLED++VK+  A  +         +  +      + +T+  V     ++  N RS S
Sbjct: 260 SYQSLEDKIVKREMAKGATSSTPAGLPVELDDRAPYLRLLTRGAVKADAAELQANPRSAS 319

Query: 309 AKLRAGMRTVERSI 322
            +LRA  R  E   
Sbjct: 320 VRLRAAERLRETPH 333


>gi|229490464|ref|ZP_04384305.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121]
 gi|229322754|gb|EEN88534.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121]
          Length = 336

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 111/334 (33%), Positives = 174/334 (52%), Gaps = 26/334 (7%)

Query: 13  IHHTIGD--------HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK 56
           + H + +        HVPVLL +   LL PA         G  ++DAT G GG+S  F  
Sbjct: 1   MDHEVNEPSDADGFAHVPVLLHRADDLLGPAITAVGDGGAGAYMIDATLGLGGHSEFFLG 60

Query: 57  MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVV 108
                ++I LDRD  A+    E +  + ++ +    T+  ++D          + V  ++
Sbjct: 61  KYPGLHLIGLDRDTNALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAIL 120

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  DRGF++    PLDMRM  + G++A++V+N  +  DL RIL   GEE+
Sbjct: 121 FDLGVSSMQLDEADRGFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEER 180

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226
            A +IA  I+++R+  PF T+  L  L+ +T+   ++    HPA R+FQALRI VN E++
Sbjct: 181 FAGKIASEILRQREREPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELD 240

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L   + +   AL  GG ++ +S+ SLEDR+VK     RS         +        F+
Sbjct: 241 SLRAAVPAGLDALAVGGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFR 300

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            +T+     +++++  N RS   +LRA  R   R
Sbjct: 301 ILTRGAERASEQEIEENPRSAPVRLRAAERISRR 334


>gi|323452900|gb|EGB08773.1| mraW bacterial methyltransferase-like protein [Aureococcus
           anophagefferens]
          Length = 357

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 148/320 (46%), Gaps = 15/320 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
            A+      H PV+  + +  L        +D T G GG+S         G  ++ +DRD
Sbjct: 37  EALPAASAYHTPVMGNECVDWLVTKRDGFYVDGTLGGGGHSSLILAKLGDGGRLVGVDRD 96

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
             A+    + +     +FS   A +        +   +  DGV+ DLGVSS Q+D   RG
Sbjct: 97  AAAIEAAGDRLAADG-RFSSVHANYDAGVRRAVEAAGRKADGVLLDLGVSSRQLDDAARG 155

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+  GP+DMRM    G +ASD+VN  + +DL  +L    +E  A R+A A+V  R   
Sbjct: 156 FSFRGDGPIDMRMDGRDGTTASDLVNGLDERDLAFLLRANADEPNAGRVARALVAARPLG 215

Query: 184 PFQ-----TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
                       +    +         +     R+FQALR+ VN+E   L + L      
Sbjct: 216 STTALADAVAAAVPRQKRSAPAAHAQAQKKAVARAFQALRVEVNDEFGALERLLLDLPAL 275

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           +  GG ++V+++HSLEDR VK+ F     +  A R         A F  + +K + P++ 
Sbjct: 276 VAEGGRVVVLTYHSLEDRRVKRIFRDGRLRGDAPRDDY--GNKLAPFAPLHRKALPPSEG 333

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           +V  N R+RSAKLRA  RT 
Sbjct: 334 EVERNPRARSAKLRAAERTD 353


>gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 189/288 (65%), Gaps = 3/288 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
              H+PVLL +V+  L PA G +I+D TFGAGGY+R+    G++V+A+DRDP A++ G++
Sbjct: 21  SARHIPVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRD 80

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +  L QA FS L ++V     DG+V D+GVSSMQ+D  +RGFSF+  GPLDMR
Sbjct: 81  LEVQSGGRLRLVQAPFSTLDEHVES--ADGIVLDIGVSSMQLDQAERGFSFRADGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+ SG+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L+  I+
Sbjct: 139 MAQSGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIE 198

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +  +  ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L VV+FHSLEDR
Sbjct: 199 THIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLAVVTFHSLEDR 258

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +VK+F A R+      RH+  ++A  A F+      V     +VA N 
Sbjct: 259 IVKRFIADRADVATGSRHLPEAHARTATFRKAGGG-VTAGDAEVAANP 305


>gi|311248051|ref|XP_003122950.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Sus scrofa]
          Length = 405

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 132/351 (37%), Positives = 191/351 (54%), Gaps = 41/351 (11%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--V 61
           +S    S A+      H+PV++++V+  L P  G+  LD TFG+GG++++  +  S+  +
Sbjct: 57  RSQDRDSEAMTKL---HIPVMVDEVVHCLAPQKGQFFLDMTFGSGGHTKAILQKESDIIL 113

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSM 116
            ALDRDP A +  ++    Y +Q       FSQ +  +   GV      GV+ DLG SSM
Sbjct: 114 YALDRDPTAYAIAEQLSEVYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSM 173

Query: 117 QIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           Q+D  +RGFS +K GPLDMRM         +A+DVVN  +   L  IL   GEEK A +I
Sbjct: 174 QLDSPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQHALASILRAYGEEKHAKKI 233

Query: 173 AHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNE 224
           A AIV+ R   P   TQ L+S+         +Y  K       H AT++FQA RIFVNNE
Sbjct: 234 ASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNNE 293

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------ASR 265
           + EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F                     S+
Sbjct: 294 LNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQ 353

Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            G  +  +  I +   P +++ + KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 354 LGSSLENKEGISTGKAPLMWKLLHKKVLTPEDQDVQDNPRGRSAKLRAAIK 404


>gi|300088323|ref|YP_003758845.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528056|gb|ADJ26524.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 15/300 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + HT  DH PV+L + +  L   PG   +D T GAGG++R+   M   G  ++ LD DP 
Sbjct: 1   MSHT--DHTPVMLRESLQALAVGPGGRYVDGTTGAGGHARAILDMSAPGGQLLGLDADPE 58

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           ++    E +  Y+  F L  A FS++++           G++ DLG++SMQ+    RGFS
Sbjct: 59  SLKIASENLSGYEGSFRLVNANFSRMEEICRQYDFYPVHGIILDLGLASMQLTETGRGFS 118

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           FQ   PLDMR S     +A+++VN  +  ++  IL   GEE+++  IA    +  +S P 
Sbjct: 119 FQYDAPLDMRFSPDQKLTAAEIVNTWSETEIADILYRYGEERRSRAIA---RRIVESRPL 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT  L++L+ KT+   ++  IHPATR+FQALRI VN+E+  L   L  A + L   G L
Sbjct: 176 KTTTQLANLVAKTI--GRSGDIHPATRTFQALRIAVNDELARLEDTLDQAVRLLGYSGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +V+++HSLEDR+VK+FF   +   +    +      H A  + + +KV+ PT E+V  N 
Sbjct: 234 VVIAYHSLEDRIVKQFFQREATDCVCPVELPECRCGHVARLRVLNRKVMTPTDEEVRANP 293


>gi|330836624|ref|YP_004411265.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta
           coccoides DSM 17374]
 gi|329748527|gb|AEC01883.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta
           coccoides DSM 17374]
          Length = 314

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 103/303 (33%), Positives = 154/303 (50%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75
           H PVL E+V+  L        +++D T G GG++    +   N+  I LDRD       +
Sbjct: 6   HQPVLAEEVLDALVIPLDVPALMIDCTTGEGGHTGMMLERHPNLTVIGLDRDEAIQKKAR 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  Y  +F      F            D ++FDLG+S        RGFSFQK  PLDM
Sbjct: 66  TRLESYGGRFIPTLTWFDDFLTTYEGTAPDAILFDLGISMFHYVESGRGFSFQKPEPLDM 125

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R+     IS +D+VN    + L  I+   GEE+ + +IA AI + R       +  L+ L
Sbjct: 126 RLDAQDAISVADIVNTYEERRLADIIYAYGEERHSRKIAAAICRARAEERLTYSDRLAEL 185

Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  V    +  RIHPAT++FQALRI VN+E++ +   + +A K ++ GG + V++FHSL
Sbjct: 186 IKSAVPPAYRFGRIHPATKTFQALRIEVNHELDRIKPAIEAALKIIRPGGRIAVITFHSL 245

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK  F   +      R    + +    F  ITKK +VP++++   N  +RSAKLR 
Sbjct: 246 EDRKVKWIFKEAAWDTEETREK-KTASTFPPFAIITKKPIVPSEDECRRNPAARSAKLRV 304

Query: 314 GMR 316
             +
Sbjct: 305 IEK 307


>gi|227494640|ref|ZP_03924956.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831822|gb|EEH64205.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 344

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 182/307 (59%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           H PVL+++V+ LL PA   V    ++DAT G GG++ +         VI +DRDP A+  
Sbjct: 22  HEPVLIDEVLDLLAPAFTGVEIATMIDATLGMGGHTEAVITAFPNVRVIGIDRDPNAIRL 81

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + +  + E+F    AT+  + +   +      +D V+ DLGVSS+Q+D  +RGF++ +
Sbjct: 82  ASKRLESFGERFKAVHATYDSVYEVAEENGLAGKIDAVLMDLGVSSLQLDDDERGFAYSR 141

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM    GI+A++++  A+  +LTRIL   GEEK ASRIA  I K+R++ P +T+
Sbjct: 142 NTYLDMRMDPTQGITAAELLATASAAELTRILRTFGEEKFASRIARNIEKQRETKPIETS 201

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +++ ++  + +    +PA R+FQALR+ VN E++ LA  + +A ++LK GG L+V
Sbjct: 202 LELTEIVRASIPAAARRQGGNPAKRTFQALRVAVNEELDILADAVPAALESLKVGGRLVV 261

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            S+ SLEDR+VK      S   +     +  +      +++T+K +  T+E +A N R+ 
Sbjct: 262 ESYQSLEDRIVKNVIKDGSEINIPPGLPVIPDHLKPSLENVTRKAIQATEEQIADNPRAA 321

Query: 308 SAKLRAG 314
           S +LRA 
Sbjct: 322 SVRLRAA 328


>gi|206602140|gb|EDZ38622.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 307

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 21/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78
           H+PV+ ++V+ +L+  PG+  +DAT G GG++R+  + G +VIA+DRDP A+   + E +
Sbjct: 17  HLPVMTKEVLEVLDVQPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + E+  L     + + +++      V GVV D G S  Q      G SF   GPLDMR
Sbjct: 77  PVFGERLRLTCMNHAGMGEFLSSMGVDVSGVVLDSGWSMAQASESGAGLSFDAEGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSL 194
           M  +   +A D++   + ++L  I    GEE  A  I+ A+V+ R +    +T ++L++ 
Sbjct: 137 MDPTLQRTAMDILEHQSAEELAEIFSNFGEEPLAMPISRALVQSRSRGRLPRTPKELAAF 196

Query: 195 IQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +    Y    + +R HPATR F ALRI VN EI+ L +G+      L +G  L V++FHS
Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILVSGARLAVLTFHS 256

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR +K  F     +                 + +  K V+P + ++  N RSRSAKLR
Sbjct: 257 REDREIKHLFRGWVREGW--------------GRLLQSKPVLPGKAEIEQNPRSRSAKLR 302

Query: 313 A 313
            
Sbjct: 303 V 303


>gi|313886065|ref|ZP_07819803.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924595|gb|EFR35366.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 310

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 157/318 (49%), Gaps = 16/318 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS+ +      H  VL E  + LL   P  + +D T G GG+SR+  +        I LD
Sbjct: 1   MSAKL-----YHTAVLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATF-SQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDR 123
           +DP AV        D +  F      +  Q  DY      VDG++ DLGVSS   D  +R
Sbjct: 56  QDPDAVVNA---PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSEER 112

Query: 124 GFSFQKSG-PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           GFSF+      DMRM+  SG++A D++   + + L  IL   GE   A RIA  +V  R 
Sbjct: 113 GFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSHRA 172

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                T   L  ++   +        +  +R FQALRI VN+E+  L Q L  + + LK 
Sbjct: 173 VGYP-TIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKP 231

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + ++S+HSLEDR+VK+FF     +  +        + PA  + +TKK + P+ +++A
Sbjct: 232 GGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADEIA 291

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+RSAKLR   R   
Sbjct: 292 DNNRARSAKLRVAERREN 309


>gi|313837465|gb|EFS75179.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA2]
 gi|314971672|gb|EFT15770.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA3]
          Length = 337

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP-APGK--VILDATFGAGGYSRSFCKMGS--NVI 62
            M++    +   HVPV+  +++ LL P       V +D T G GG++ +         ++
Sbjct: 2   LMATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLV 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++     ++ + ++  L  A   +L + + D     VD V+ DLG+SS+QID
Sbjct: 62  GIDRDRQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQID 121

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM    G +A+ V+N+++  DL RIL   GEEK A RI  AIV 
Sbjct: 122 EVNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVT 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A 
Sbjct: 182 ERDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRAL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+++HSLEDR VK+ F             I   +  A F  +T+    P 
Sbjct: 242 DRLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPD 301

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++++ N RS SA+LR   R 
Sbjct: 302 ADEMSANPRSASARLRVIERV 322


>gi|224372899|ref|YP_002607271.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH]
 gi|262825192|sp|B9L9G3|RSMH_NAUPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223589436|gb|ACM93172.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH]
          Length = 306

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 13/306 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           +      H+PVLL + I L N  P     +D T G GG+S +  +      +I +D+D  
Sbjct: 1   MRIEDIPHIPVLLNETIGLYNDMPENGYFIDCTLGFGGHSEAILEKYPNIKLIGIDQDAE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           A+   +  +  + ++        S  L++   D  V G++ D+GVSS Q+D  +RGF+F+
Sbjct: 61  AMHFAKNRLARFGDRVQFINKRASSALEELPEDLPVSGILADIGVSSYQLDNKERGFTFE 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
                         SA DVVN  + +DL RI+   GE ++  ++  AI+ +R     +  
Sbjct: 121 SEELDMRMDKTQDFSAKDVVNFYSKEDLERIIKNYGECRRFKKVVSAIISKRPIKSNREL 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D+       +            + FQA+RI VNNE+ EL + L++A+K  K G +L ++
Sbjct: 181 ADI-------LGHIGLRDKKDLAKIFQAIRIEVNNELNELEKILKNAKKLAKNGTILGII 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F   S K +     I      +  + + +TKK +V ++E++  N RS
Sbjct: 234 TFHSLEDRIVKNTFKEWSKKCICPPEAIRCECGGNNQLGKILTKKPLVASKEEIKMNPRS 293

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 294 RSAKLR 299


>gi|23335461|ref|ZP_00120697.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Bifidobacterium
           longum DJO10A]
 gi|23465877|ref|NP_696480.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum NCC2705]
 gi|189439036|ref|YP_001954117.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum DJO10A]
 gi|227547548|ref|ZP_03977597.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621159|ref|ZP_04664190.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132476|ref|YP_003999815.1| s-adenosylmethionine-dependent membrane protein [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|322689514|ref|YP_004209248.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691469|ref|YP_004221039.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|42558985|sp|Q8G4R0|RSMH_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445917|sp|B3DQM3|RSMH_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23326579|gb|AAN25116.1| widely conserved hypothetical protein in upf0117 [Bifidobacterium
           longum NCC2705]
 gi|189427471|gb|ACD97619.1| Putative S-adenosylmethionine-dependent membrane protein
           [Bifidobacterium longum DJO10A]
 gi|227211958|gb|EEI79854.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515620|gb|EEQ55487.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773403|gb|ADQ02891.1| Putative S-adenosylmethionine-dependent Membrane protein
           [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456325|dbj|BAJ66947.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460850|dbj|BAJ71470.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 359

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H+PVLL+  + L+ PA      + +D T G  G+S +F K      +I +DRD
Sbjct: 1   MVDVANIHLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122
             A+    E M      ++F    A F QL   + D+ ++ V     DLG+SS+QID  D
Sbjct: 61  SEALGLATERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  ++   +  +L RI    GEE+ + +IA AIV RR 
Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  
Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F A      +     +        F  +T+  +   + ++A
Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 ANPRSASVRLRAVE 314


>gi|289640760|ref|ZP_06472931.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca
           glomerata]
 gi|289509336|gb|EFD30264.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca
           glomerata]
          Length = 359

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 184/314 (58%), Gaps = 10/314 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             H PVL ++V+ALL P    P  V++DAT G  G++ +         +I LDRDP A+ 
Sbjct: 21  ATHTPVLSDRVVALLAPALLRPEAVLVDATVGLAGHASALLDACPTARLIGLDRDPQALE 80

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  + D  ++ +L  A + QL   +       V GV+FDLGVSS+Q+D  +RGFS+ +
Sbjct: 81  HSRARLADRADRATLVHAVYDQLPTVLDALGLTEVHGVLFDLGVSSLQLDSDERGFSYSR 140

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G +A+DVVN  +  +LTRIL   GEE+ A RIA A+V  R   PF ++
Sbjct: 141 DAPLDMRMDPGRGRTAADVVNTYDADELTRILRHYGEERFARRIASAVVAERAREPFVSS 200

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ L+++T+   ++ N  +PA R+FQALRI VN E+E LA+ L +A  AL  GG L+V
Sbjct: 201 ARLADLVRRTIPAATRRNGGNPAKRTFQALRIEVNGELEALARALPAALDALAVGGRLVV 260

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDR+VK+ FA+R    +     +         + +T+    P+ ++VA N R+ 
Sbjct: 261 LAYHSLEDRMVKRAFAARVRPDVPPDLPVIPPDAAPTMRWLTRGGETPSADEVAANPRAS 320

Query: 308 SAKLRAGMRTVERS 321
           +AKLRA  R    S
Sbjct: 321 AAKLRAVERIAPPS 334


>gi|255325352|ref|ZP_05366458.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           tuberculostearicum SK141]
 gi|255297917|gb|EET77228.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           tuberculostearicum SK141]
          Length = 346

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 110/319 (34%), Positives = 166/319 (52%), Gaps = 20/319 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ E++  LL P         V++DAT GAGG++R F +      VI +DRD  A+ 
Sbjct: 16  HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPKARVIGVDRDKQALR 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSMQIDCG 121
              E +  Y ++F    A F +L   + +   D             +FDLGVSSMQ+D  
Sbjct: 76  NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARTVGIAGALFDLGVSSMQLDQA 135

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM    GI+A+DV+N     DL R+L   G+E+ A +IA A++K R
Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYTHGDLARVLKTYGDERFAGKIASAVLKER 195

Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF+ +  L  L+   +   ++    HPA R+FQALR+ VN E+E +   L    +AL
Sbjct: 196 DKEPFENSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ SLEDR+VK  F   +         +        F+ +T+     ++E+
Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFKIVTRGAEKASEEE 315

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           V  N R+ S ++RA  R  
Sbjct: 316 VTENSRAASVRVRAIERLE 334


>gi|301770125|ref|XP_002920478.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Ailuropoda melanoleuca]
 gi|281337489|gb|EFB13073.1| hypothetical protein PANDA_009216 [Ailuropoda melanoleuca]
          Length = 407

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/335 (39%), Positives = 186/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G++ LD TFG+GG++R+  +  S+  + ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV      GV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 251

Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S+         V+  K       H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                    AS+ G     +        
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQASQLGSGHENKEGGSIGRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P   DV  N R+RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLTPEDRDVQDNPRARSAKLRAAIK 406


>gi|115372771|ref|ZP_01460077.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1]
 gi|115370252|gb|EAU69181.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1]
          Length = 278

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/280 (37%), Positives = 154/280 (55%), Gaps = 6/280 (2%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           ILD T G GG++ +    G+ VI +DRDP A++     +  +   F      F +L    
Sbjct: 2   ILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLGGHA-HFQARAGNFGELPRVA 60

Query: 100 PDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTR 158
            D   VDGV+ DLGVSS Q+D  +RGFSF   GPLDMRM   G +A++++ Q + ++L R
Sbjct: 61  ADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMGPEGRTAAELIAQEDERELAR 120

Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALR 218
           I+  LGEE  +  IA  + +     P +T +   ++ +     +   RIH AT++FQALR
Sbjct: 121 IIYELGEESFSRPIARELKRAL---PTRTLEAAEAVKRAVPRKAWPKRIHVATKTFQALR 177

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-P 277
           + VN E+E L   L +  + LK GG   V++FHSLEDR VK+ F +  G       +   
Sbjct: 178 MAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKVKEAFRNLVGACRCPPGLPVC 237

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +   P  F  +TKK V  ++++V  N RSRSA LRA  + 
Sbjct: 238 ACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEKI 277


>gi|189347978|ref|YP_001944507.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245]
 gi|263445795|sp|B3EIL6|RSMH_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189342125|gb|ACD91528.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245]
          Length = 322

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 158/319 (49%), Gaps = 19/319 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69
             H PVL  +V+ LL   P  V +D T G GG+S +  +            +I +D+D  
Sbjct: 5   SYHEPVLAAEVLQLLVRMP-GVYVDGTLGGGGHSLAILEELERKGFLADSFLIGIDQDDH 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDY--------VPDKGVDGVVFDLGVSSMQIDCG 121
           A+    E +  +    ++ +  FS +                V G++ DLGVSS QID  
Sbjct: 64  ALKAASEKLSGFSGSTAIIKGNFSAIAAIVRKISAERHFTDSVAGILLDLGVSSAQIDTP 123

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+ +SGPLDMRM      SA+D+VN  + ++L  +    GEE ++  IA  I+  R
Sbjct: 124 ERGFSYMRSGPLDMRMDPEAESSAADLVNTLSERELVTLFFRYGEEPRSRSIARGIIDYR 183

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +        +  + I +      +  I   +R FQALR+ VN E+E L Q L      L 
Sbjct: 184 EKHGSILRTEELAEIIRLREARPDRVIKTLSRVFQALRVEVNRELEVLEQVLADGASLLS 243

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299
           A G L V+S+HSLEDR+VK FF ++S      R + +      A F  +T+K V   Q++
Sbjct: 244 AQGRLAVISYHSLEDRMVKSFFTAQSSSDWGPRGVGLTEPLKKAEFAVVTRKPVASGQQE 303

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           ++ N RSRSAKLR   +  
Sbjct: 304 LSLNPRSRSAKLRVLEKLA 322


>gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
 gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
          Length = 326

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 120/295 (40%), Positives = 166/295 (56%), Gaps = 10/295 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAV 71
           +      H+PV+LE V+  L P  G   +D TFG GGY+R+        V A+DRDP A+
Sbjct: 1   MTADPALHIPVMLEPVVEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  +++  +    +  F  +   V +     VDG+  DLGVSS QID  +RGFSF+
Sbjct: 61  RRAGILAQEFGGRLIAIEGRFGAMDQLVANAGAAQVDGIALDLGVSSPQIDDAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM  +G SA+DVVN A   +L  I+  LGEE+ A R+A A+V  R + P   T
Sbjct: 121 FDGPLDMRMEKAGPSAADVVNGATEAELADIVFYLGEERYARRVARALVAARLNGPITRT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++++++ V  SK+  I  ATR+FQALRI VN E++EL  GL +AE+ L  GG L VV
Sbjct: 181 GELAAIVRRVVPSSKSGGIDSATRTFQALRIHVNRELDELDHGLEAAERLLSPGGRLAVV 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI------PSNAHPAVFQSITKKVVVPTQ 297
           SFHSLEDR VK F   RSG+              P +     F+ IT + + P+ 
Sbjct: 241 SFHSLEDRRVKTFLRRRSGRTSGPSRHAMAAIAGPVDGPRPTFEVITGRPIAPSD 295


>gi|296122349|ref|YP_003630127.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
 gi|296014689|gb|ADG67928.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
          Length = 298

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/317 (37%), Positives = 172/317 (54%), Gaps = 34/317 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PV+L +VI  L   PG V+ D T GAGG+SR   K   +   ++A DRDP  +S  +
Sbjct: 1   MHLPVMLREVIQQLQLEPGLVVADGTLGAGGHSREILKAIGSAGMLLAFDRDPMMISLAE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGFSF 127
           +T+    E   + Q ++  ++D +            VD ++ DLG SS Q+   +RGFSF
Sbjct: 61  KTV--CGENVHIHQGSYIDIRDVLQRHTQATGRPPLVDRLLLDLGYSSDQLADRERGFSF 118

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q  GPLD+R S    +SA+  +  AN  ++ R+L   GEE  A R+  AI    +    Q
Sbjct: 119 QTEGPLDLRFSTSENVSAAHWLATANDSEIVRVLTEFGEEPFADRLGPAIGLAARRGELQ 178

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGG 243
           TT+DL  ++++TV  +  +N   HPATR FQALRI VN+E+  ++  L     + L  GG
Sbjct: 179 TTKDLVRVVEQTVPPAILRNAEKHPATRVFQALRIQVNDELTHVSTMLNQIAPEVLAPGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++ V++FHSLEDRLVK+ F                     V+Q +T K +VPT  ++ FN
Sbjct: 239 IMAVITFHSLEDRLVKQAFR-----------------QKNVWQELTDKPLVPTPAEIRFN 281

Query: 304 RRSRSAKLRAGMRTVER 320
            RSRSAKLR   R  E 
Sbjct: 282 PRSRSAKLRIARRIAEN 298


>gi|75675236|ref|YP_317657.1| methyltransferase [Nitrobacter winogradskyi Nb-255]
 gi|88909206|sp|Q3STT6|RSMH_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|74420106|gb|ABA04305.1| methyltransferase [Nitrobacter winogradskyi Nb-255]
          Length = 332

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 133/296 (44%), Positives = 178/296 (60%), Gaps = 5/296 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +      HVPVL  + +A+L P  G V +DATFGAGGYSR+      + VI +DRDP A+
Sbjct: 1   MTAPPIRHVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILATAETRVIGIDRDPTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G   + +   +  L +  FS L           VDGVV D+GVSSMQ+D   RGFSF+
Sbjct: 61  AGGSGLVEESGGRLILVEDRFSHLAAVCAAQDAAAVDGVVMDVGVSSMQLDEAGRGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRMS  G +A++VV +A+  DL  I+ I GEE+++  +A AIV  R+  P  TT
Sbjct: 121 LDGPLDMRMSGHGPTAAEVVARASETDLADIIYIFGEERRSRAVARAIVGARRHGPIATT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ LK GG L VV
Sbjct: 181 RALADIVSKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           SFHSLEDR+VK F A R       RH       P  F  +TK+ + P  ++V  N 
Sbjct: 240 SFHSLEDRIVKNFLAWRGKTGGGSRHRPEIERAPPSFAILTKRPLTPGDDEVQANP 295


>gi|282854266|ref|ZP_06263603.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139]
 gi|282583719|gb|EFB89099.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139]
          Length = 346

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62
            M++    +   HVPV+  +++ LL      G+ V +D T G GG++ +  +   +  ++
Sbjct: 11  LMATDAIGSDAVHVPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 70

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119
            +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID
Sbjct: 71  GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 130

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFS+    PLDMRM  S G +A+ ++N+++  DL R+L   GEEK A RI  AIV 
Sbjct: 131 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVT 190

Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A 
Sbjct: 191 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 250

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P 
Sbjct: 251 NRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPD 310

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            ++VA N RS SA+LR   R 
Sbjct: 311 ADEVATNPRSASARLRVIGRV 331


>gi|213965216|ref|ZP_03393413.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46]
 gi|213952068|gb|EEB63453.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46]
          Length = 346

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 161/329 (48%), Gaps = 29/329 (8%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           HVPVLL +V  LL P         V++D T GAGG++    +    +  + LDRD  A+ 
Sbjct: 17  HVPVLLHRVTDLLRPGIEALGDDAVVVDGTLGAGGHTEYLLEQFPKLCVVGLDRDDNALR 76

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV--------------------VFDLG 112
             +E +  +  +F  F+  F  L + +  +                         +FDLG
Sbjct: 77  GAEERLARFGNRFVAFRVRFDSLAEVLSGEIPAAAGGSGAENILARAAGKGIAGALFDLG 136

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQ+D  +RGF+++   PLDMRM    GI+A+DV+N  +  D+ RIL   G+E+ A +
Sbjct: 137 VSSMQLDQVNRGFAYRVDAPLDMRMDASQGITAADVLNTYSHGDIARILSTYGDERFAGK 196

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AI++ R+  PF  +  L  L+ +T+   S+    HPA R+FQALRI VN E+E L  
Sbjct: 197 IASAILREREKEPFTNSGRLVELLYETIPAASRRKGGHPAKRTFQALRIEVNRELEALEN 256

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L     AL   G  + +S+ SLEDR+VKK F  R          +    H   F  IT+
Sbjct: 257 VLPQVCDALAVDGRAVFMSYQSLEDRIVKKDFVERVKSTTPPGLPMELPGHEPHFALITR 316

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
                +  ++  N R+   ++R   R   
Sbjct: 317 GAEKASASEIEDNPRAAPVRVRCIERIRA 345


>gi|263447803|sp|Q2NIH4|RSMH_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 303

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 13/309 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           ++     H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A
Sbjct: 1   MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDY--VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +  ++T+  +     +  + F             +DG++FDLG+SS QID   RGFS+ 
Sbjct: 61  CTNAKKTLSPHLP-IEIIHSIFRIXSPISTTKSFSLDGILFDLGLSSCQIDNPQRGFSYL 119

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + PLDMRM+ +  I+A  ++N  +   L  I  + GE K AS +   I    +  P QT
Sbjct: 120 HNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNASLVVSEI---IKQRPLQT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           + DL S+  +   F    + H A + FQALRI VN E+E L Q L  +   LK    ++V
Sbjct: 177 SYDLVSITDR---FCNLQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNARIVV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR++K FF   S  V+  + +  +         ITKK  +P++E++  N RS 
Sbjct: 234 ISFHSLEDRIIKHFFKKHSTFVL-PKKLPIAIIPQTPLSIITKKAFLPSEEEMQNNSRSI 292

Query: 308 SAKLRAGMR 316
           SAKLR  ++
Sbjct: 293 SAKLRVAVK 301


>gi|332299370|ref|YP_004441291.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176433|gb|AEE12123.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 338

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 153/308 (49%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VL E  + LL   P  + +D T G GG+SR+  +        I LD+DP AV    
Sbjct: 34  YHTAVLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLDQDPDAVVNA- 92

Query: 76  ETMRDYKEQFSLFQATF-SQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG-P 132
               D +  F      +  Q  DY      VDG++ DLGVSS   D  +RGFSF+     
Sbjct: 93  --PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSEERGFSFRYEEAM 150

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            DMRM+  SG++A D++   + + L  IL   GE   A RIA  +V  R      T   L
Sbjct: 151 PDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSHRAVGYP-TIAAL 209

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++   +        +  +R FQALRI VN+E+  L Q L  + + LK GG + ++S+H
Sbjct: 210 MEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKPGGRIAIISYH 269

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+FF     +  +        + PA  + +TKK + P+ +++A N R+RSAKL
Sbjct: 270 SLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADEIADNNRARSAKL 329

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 330 RVAERREN 337


>gi|88811846|ref|ZP_01127099.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88790730|gb|EAR21844.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 303

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 147/301 (48%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           LLE  I  L      V +D TFG GG++ +  K    G  +  +D+DP A+S  Q+    
Sbjct: 2   LLEAAIDALRIQANGVYVDGTFGCGGHAAAILKRLATGGRLGLIDKDPSAISRAQQKFAA 61

Query: 81  YKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               F     ++++L            +DGV+ DLG SS Q+D   RGFSF + GPLDMR
Sbjct: 62  DARCFIH-HGSYAELGVLADTCGVRGRIDGVLLDLGASSPQLDEARRGFSFLRDGPLDMR 120

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G+SA+  +    + ++  ++   GEE+ A RIA AI   RQ+     T    + +
Sbjct: 121 MDPSKGVSAAAWLADTPLSEIESVIRRYGEERYARRIAQAIDASRQAGRLPQTTGALAAL 180

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +    HPATRSFQA+RI +N+E+EEL   L      L  GG L+V+SFHSLED
Sbjct: 181 IAAAVPRREVGKHPATRSFQAIRIAINDELEELRCFLAGICDLLCPGGRLVVISFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK+F    S        +               K V P  E++  N R+RSA LR   
Sbjct: 241 RLVKRFMRDHSRIGDLPPGIPIVAHSMRPRLRRPAKPVRPGAEEIRVNPRARSAVLRVTE 300

Query: 316 R 316
           R
Sbjct: 301 R 301


>gi|145220562|ref|YP_001131271.1| S-adenosyl-methyltransferase MraW [Prosthecochloris vibrioformis
           DSM 265]
 gi|262824996|sp|A4SH10|RSMH_PROVI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145206726|gb|ABP37769.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeovibrioides DSM
           265]
          Length = 327

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/321 (33%), Positives = 162/321 (50%), Gaps = 19/321 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KM-----GSNVIALDRDPFA 70
            H PVL  + +++L   P  + LD T G GG+S +     +      GS ++ +D+D  A
Sbjct: 8   YHEPVLAPESVSMLVRGP-GLYLDGTLGGGGHSLAILCELERSGWLEGSLLLGIDQDDEA 66

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYV--------PDKGVDGVVFDLGVSSMQIDCGD 122
           +    E + DY+E     +  F  +             +    G++ DLGVSS Q+D   
Sbjct: 67  LQEAGERLADYREHAVALKGNFGNIAALSAREAGSRGMEPQASGILLDLGVSSHQLDVPL 126

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+ + GPLDMRM      +A+D++N A   +L  I    GEE  +  IA A+  RR 
Sbjct: 127 RGFSYMQPGPLDMRMDSGATGTAADILNTAPEAELASIFFRYGEEPLSRVIARAVTTRRV 186

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                 T D  + + ++V F +   +   +R FQALRI VN E+E L + L      LK 
Sbjct: 187 EKGPFHTTDELADLVRSVVFGRERVMKSLSRVFQALRIAVNQELEVLERVLGDGVMLLKP 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
           GG + V+S+HSLEDR+VK+FF+S +      + + +     PA   ++T K V    E+V
Sbjct: 247 GGRMAVISYHSLEDRMVKRFFSSLTTADWGPKGVGLREPVRPAAAIAVTGKPVRAGAEEV 306

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
           A N R+RSAK+R   +   R 
Sbjct: 307 ARNPRARSAKMRVIEKMENRE 327


>gi|224436850|ref|ZP_03657839.1| S-adenosyl-methyltransferase MraW [Helicobacter cinaedi CCUG 18818]
 gi|313143328|ref|ZP_07805521.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter cinaedi CCUG 18818]
 gi|313128359|gb|EFR45976.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter cinaedi CCUG 18818]
          Length = 311

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H  VL  +V+  LN   G V +D T G GG++ S  +     ++ A DRD  A+S  ++
Sbjct: 2   KHFSVLKNEVLEALNLESGAV-IDCTLGYGGHTLSLLEQNPNIHIYAFDRDESALSLAKQ 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  +    F+   D + ++    V G++ D+GVSSMQ+D   RGFSF  +   
Sbjct: 61  RLAPYASRLHIQHCAFANALDSLGNEQLARVRGILADIGVSSMQLDDKHRGFSFTSNNLD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
               S   ++A+ V+N  +   L  I  I GE +Q+ ++   IV  R+  PF++  +LS 
Sbjct: 121 MRMDSTQNLNAAKVINTYSAMRLEEIFRIYGEIRQSKKLTELIVSTREKKPFESALELSE 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS----AEKALKAGGLLIVVS 249
           LI++  +F +   IHPAT +FQALRI VN E+E+L   L+S        +     + ++S
Sbjct: 181 LIER--HFPRIGGIHPATLAFQALRIEVNGELEQLQTLLQSIESAFINGVLYDCKVAIIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR++K+ F   +       +        + A+   +TKK ++P++ ++  N+RSR
Sbjct: 239 FHSLEDRIIKQTFKQWAKSCKCGENALKCECGNNNALGSILTKKPILPSETEIIQNKRSR 298

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 299 SAKLRIFQ 306


>gi|313661472|ref|NP_001186351.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           METT5D1 [Gallus gallus]
          Length = 409

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/354 (38%), Positives = 186/354 (52%), Gaps = 39/354 (11%)

Query: 2   ESKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           +S++ K   S  +   G  HVPV++E+V++ L+P  G+  LD TFGAGG+S +  +  SN
Sbjct: 55  KSETKKLPDSTENKNFGRLHVPVMMEEVVSCLSPQSGQCFLDMTFGAGGHSTALLEKASN 114

Query: 61  --VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGV 113
             + ALDRDP A    Q+    Y +Q       FSQ +  +         +DGV+ D G 
Sbjct: 115 ITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGC 174

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQA 169
           SSMQ D  +RGFS QK GPLDMRM         +A+DVVN  + + L  IL   GEEK A
Sbjct: 175 SSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHA 234

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFV 221
            +IA AIV+ R   P   TQ L+S++      S             H AT++FQ LRIFV
Sbjct: 235 KKIASAIVQARSIYPITRTQQLASIVAGAFPASALYARKDLLQRPTHIATKTFQGLRIFV 294

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-----------------AS 264
           N+E+ EL  GL++AEK LK GG L+ +SFHSLEDR++K+F                    
Sbjct: 295 NDELHELFIGLKTAEKFLKPGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSKQKIRQ 354

Query: 265 RSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                      H  P     + +  I KKV+ P  +D+  N R+RSAKLRA ++
Sbjct: 355 ALKNCSKEEDTHEFPHGKSNSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 408


>gi|157737563|ref|YP_001490246.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri RM4018]
 gi|172045652|sp|A8EUF3|RSMH_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157699417|gb|ABV67577.1| S-adenosyl-methyltransferase [Arcobacter butzleri RM4018]
          Length = 300

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 145/300 (48%), Gaps = 10/300 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL  +V+          I+D T G  G+S           +I  D+D  A++  ++
Sbjct: 4   PHIPVLYNEVLETFKDINEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  ++      +  F  + +   D  + GV+ D+GVSS+Q+D  +RGF F+        
Sbjct: 64  RLEKFENGVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFESLTLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                + A+ VVN  +  +L RI    GE ++  ++A  IV  R     +   D  S   
Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNRPFNSSKELADFLSKKM 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                    ++HPAT  FQA+RI VN+E+  L +   S EKA     ++ ++SFHSLEDR
Sbjct: 184 S------KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK +F   S   +   ++       + A+ + ITKK ++PT  ++  N RSRS+KLR  
Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRVF 297


>gi|225872742|ref|YP_002754199.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC
           51196]
 gi|263433378|sp|C1F466|RSMH_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225792322|gb|ACO32412.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC
           51196]
          Length = 297

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 160/308 (51%), Gaps = 28/308 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HVPVLL+  I  LN   G    DAT G  G+S +       G  +IA DRDP A+   + 
Sbjct: 6   HVPVLLQDAIRYLNVRRGGTYADATLGLAGHSSAIARLLGPGGTLIAFDRDPEAMELAKS 65

Query: 77  TMRDYK-------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +   +        +  L    FS+ +D +    +DG++ D GVSS+Q D   RGFSFQ 
Sbjct: 66  RLDALRAELGSEMPKVILHSTEFSEAEDLIEPGSLDGLLADFGVSSLQFDEAHRGFSFQA 125

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G++A+ VVNQ   K+L  ++   G   +  R         ++ P  TT
Sbjct: 126 DGPLDMRMNPRVGLTAAQVVNQFGEKELADLIYEFG---EERRSRRIARAIVRARPVSTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++       K+ RIHPATR+FQALRI+VN E+ ++   L+ A K L+ GG L+V+
Sbjct: 183 AQLARVVSAAAPAMKSERIHPATRTFQALRIYVNQELGQIEALLKVAPKLLRKGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+ K                        +++ +T+K +   +E+   N R+RS
Sbjct: 243 SFHSLEDRIAKDALRE--------------GGQQGIYEVLTRKPLTAGEEETDRNPRARS 288

Query: 309 AKLRAGMR 316
           AKLRA  +
Sbjct: 289 AKLRAAEK 296


>gi|319786245|ref|YP_004145720.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464757|gb|ADV26489.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis
           11-1]
          Length = 329

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 7/306 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
            T   H+PVL  +V+  L   P    LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 18  STPAAHLPVLFAEVLDGLRVVPEGRYLDGTFGRGGHARGVLERLGPGGRLLLMDKDPEAI 77

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +        + S+ + +F+ +  +   + +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 78  AVAEAGF-GSDPRVSIRRGSFTGMAHWDEARDLDGILLDLGVSSPQLDVAERGFSFGKDG 136

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + +A+ +++  +L I GEEKQ+ RIA AIV  R   P   T  
Sbjct: 137 PLDMRMDPDSGESAAQWLARADEREIADVLWIYGEEKQSRRIARAIVAARAQEPLTRTAQ 196

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++LI   V   K+ R +PATRSFQA+RI +N E+ +L  GL +A  AL+ GG L V+SF
Sbjct: 197 LANLIGSVVPRGKD-RSNPATRSFQAIRIHINRELADLEAGLDAALAALRPGGRLAVISF 255

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S    A R +  ++    V  ++    +   +E++  N R+RSA 
Sbjct: 256 HSLEDRMVKQFIARHSKAPPANRRLPEASVFVPVLAAL-GGAIRAGEEELQVNVRARSAV 314

Query: 311 LRAGMR 316
           LR   +
Sbjct: 315 LRVAEK 320


>gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum]
          Length = 307

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 21/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78
           H+PV+ ++V+ +LN  PG+  +DAT G GG++R+  + G +VIA+DRDP A+   + E +
Sbjct: 17  HLPVMTKEVLEVLNVHPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDG--VVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + E+  L     + + +++P   VD   VV D G S  Q      G SF   GPLDMR
Sbjct: 77  PIFGERLRLTCMNHAGMGEFLPSMRVDISGVVLDSGWSMAQASENGAGLSFDAEGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQDLSSL 194
           M  +   +A D++ Q + ++L  I    GEE  A  I+ A +  R +    +T ++L++ 
Sbjct: 137 MDPTLERTAMDILEQQSAEELAAIFSNFGEEPLALPISRALVQSRSRGRLPRTPKELAAF 196

Query: 195 IQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +    Y    + +R HPATR F ALRI VN EI+ L +G+      L +G  L V++FHS
Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFHS 256

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR +K  F     +                 + +  K V+P + ++  N RSRSAKLR
Sbjct: 257 REDREIKHLFREWVREGW--------------GRLLQSKPVLPGKAEIEHNPRSRSAKLR 302

Query: 313 A 313
            
Sbjct: 303 V 303


>gi|145588347|ref|YP_001154944.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|262824872|sp|A4SV66|RSMH_POLSQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145046753|gb|ABP33380.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 316

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALL---------NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
            H PVLL + +  L         N A   V++D TFG GG++++  K     + VI+ D+
Sbjct: 4   THRPVLLAEAVTALISGPLIQEKNAAKKIVVIDGTFGRGGHTQALLKSLEMSARVISFDK 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A+S  Q+       +F++   +F+ +  Y   + VDG++ DLG+SS Q+D   RGFS
Sbjct: 64  DLDAISVAQQI---QDPRFTIVHDSFAHMDQYAQAESVDGILLDLGISSPQVDEAHRGFS 120

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F++ GPLDMRM+   G++A++ + QA  +++TR++   GEE+ A +IA AIV +R+    
Sbjct: 121 FRREGPLDMRMNTDQGLTAAEWLEQAPQEEITRVIKTYGEERFAFQIAKAIVAKREEGLS 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T    + +  +V  ++     PATR+FQALRIF+N E+E+L  GL++A K LK G  L
Sbjct: 181 PKTTTELASLVASVVRTREAGQDPATRTFQALRIFINRELEDLELGLKAALKLLKPGARL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+FF + +   +     +   +   +  + I +  V P+  +++ N 
Sbjct: 241 AVISFHSLEDRIVKQFFQAHAKVEIPRGLPVREKDLPQSALEIIGR--VKPSDLEISENP 298

Query: 305 RSRSAKLRAGMR 316
           R+RSA +R   +
Sbjct: 299 RARSAIMRVAEK 310


>gi|308189974|ref|YP_003922905.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER]
 gi|319777256|ref|YP_004136907.1| s-adenosyl-methyltransferase mraw [Mycoplasma fermentans M64]
 gi|307624716|gb|ADN69021.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER]
 gi|318038331|gb|ADV34530.1| S-adenosyl-methyltransferase MraW [Mycoplasma fermentans M64]
          Length = 301

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 157/308 (50%), Gaps = 16/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL++ I  LN  P  + +D T G GG+S    K      +IA D+D FA+  
Sbjct: 1   MENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAFDKDTFAIEE 60

Query: 74  GQETMRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++ +   K   F L  + F  ++   D +    VDG++ DLG+SS Q+D  +RGFS+ K
Sbjct: 61  SRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDNDERGFSYNK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S    A  VVN  +   L ++L    E K A ++A AI+ +R   P  TT
Sbjct: 121 NARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISKR---PITTT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ +++           +P    FQA+RI VNNE + L Q L+ A + LK    L V+
Sbjct: 178 LELAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELLKPNTSLAVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLED +VK FF S     +  +  I       V      KV +PT  ++  N+RSRS
Sbjct: 238 TFHSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNNELELNKRSRS 291

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 292 AKLRVLKK 299


>gi|213691742|ref|YP_002322328.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|263445910|sp|B7GQ70|RSMH_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|213523203|gb|ACJ51950.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457836|dbj|BAJ68457.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 359

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 159/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H+PVLL+  + L+ PA      V +D T G  G+S +F K      +I +DRD
Sbjct: 1   MVDVANIHLPVLLDDCVNLMAPALEHENAVAVDCTLGLAGHSIAFLKTAPQARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A+    E M      ++F    A F QL   + D+    VD V  DLG+SS+QID  D
Sbjct: 61  SEALGLAAERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  ++   +  +L RI    GEE+ + +IA AIV  R 
Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRD 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  
Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F A      +     +        F  +T+  +   + ++A
Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 ANPRSASVRLRAVE 314


>gi|317483063|ref|ZP_07942064.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516661|emb|CBK70277.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum F8]
 gi|316915469|gb|EFV36890.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 359

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 160/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H+PVLL+  + L+ PA      + +D T G  G+S +F K      +I +DRD
Sbjct: 1   MVDVANIHLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122
             A+    E M      ++F    A F QL   + D+ ++ V     DLG+SS+QID  D
Sbjct: 61  SEALGLATERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  ++   +  +L RI    GEE+ + +IA AIV RR 
Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  
Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F A      +     +        F  +T+  V   + ++A
Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAVKADEHEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 ANPRSASVRLRAVE 314


>gi|194323503|ref|ZP_03057280.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           novicida FTE]
 gi|208778997|ref|ZP_03246343.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG]
 gi|194322358|gb|EDX19839.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           novicida FTE]
 gi|208744797|gb|EDZ91095.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG]
          Length = 299

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/301 (35%), Positives = 166/301 (55%), Gaps = 14/301 (4%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKE 83
           ++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E  +    
Sbjct: 2   QESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQFSN- 60

Query: 84  QFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138
            F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GPLDMRM  
Sbjct: 61  -FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMDV 119

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     +T    + + + 
Sbjct: 120 SKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLELAELIRA 179

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
               K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFHSLEDR+V
Sbjct: 180 T-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFHSLEDRIV 238

Query: 259 KKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K+ F++       +     M+P ++     + ITKK     ++++  N RSRSA LR   
Sbjct: 239 KQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRVVE 297

Query: 316 R 316
           +
Sbjct: 298 K 298


>gi|148259076|ref|YP_001233203.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5]
 gi|263433381|sp|A5FUK2|RSMH_ACICJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146400757|gb|ABQ29284.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/308 (44%), Positives = 184/308 (59%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL E+ +A+L P    V LD TFG GGYS S  +     V A+DRDP A++ G    
Sbjct: 7   HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  L +  F  L   + D+GV  +   VFD GVSS Q+D   RGFSF+  GPLDM
Sbjct: 67  ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN     +L  IL   GEE+ + RIA AIV+RR + PF+TT DL+++I
Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   + + I PATRSFQALRI VN E+ E+ + L +A   L  GG L+ VSFHSLED
Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F  + +G V A     PS     A    F+++T+ VV P + +   N R+RSA+L
Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETVANPRARSARL 305

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 306 RGIERLAA 313


>gi|146281460|ref|YP_001171613.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501]
 gi|145569665|gb|ABP78771.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501]
          Length = 293

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 107/293 (36%), Positives = 160/293 (54%), Gaps = 12/293 (4%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                 LD TFG GG+SR   +       ++  D+DP A++ GQ  +     +F + Q +
Sbjct: 2   RADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA-LAAEDGRFVVVQRS 60

Query: 92  FSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASD 146
           F++L D V        V G++ DLGVSS Q+D   RGFSF   GPLDMRM    G+SA++
Sbjct: 61  FAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGPLDMRMDPSRGVSAAE 120

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
            +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL+ ++       +  +
Sbjct: 121 WIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADLAKVLTDANPAWEKGK 180

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266
             PATR+FQ LRI +NNE+ +L +GL +A  AL+ GG L+V+SFHSLEDR+VK+F    +
Sbjct: 181 -SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFHSLEDRIVKQFMRRHA 239

Query: 267 GK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                   R +            +  K    ++ +V  N RSRSA +R   + 
Sbjct: 240 KGEADKLPRDLPIIPKAFEPRLKLIGKPQYASEAEVKANPRSRSAVMRVAEKV 292


>gi|258546144|ref|ZP_05706378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Cardiobacterium hominis ATCC 15826]
 gi|258518569|gb|EEV87428.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Cardiobacterium hominis ATCC 15826]
          Length = 305

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 157/311 (50%), Gaps = 16/311 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV VLL + +  L      V LD TFG GG+SR+          + ALDRDP A   
Sbjct: 1   MSAHVTVLLHEAVQALAIRADGVYLDGTFGRGGHSRAMLAALGRAGRLYALDRDPQAAEA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                     +F   +  FS+++    D     +DG++ DLGVSS Q+D   RGFSF K 
Sbjct: 61  AAGI---DDPRFHFARCPFSRMETAFADVGAASLDGILLDLGVSSPQLDQAARGFSFGKE 117

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF---Q 186
           GPLDMRM    GI+A+D +   +   L R++   G E     +A  I +   +A      
Sbjct: 118 GPLDMRMDNESGITAADWLAATDEATLARVIRDWGGEPHT--VARRIARAVIAARGKLRT 175

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T    + +             HPAT++FQA+RI VN+E+ E+ +GL +A + LK+GG+L 
Sbjct: 176 TLDLAAVVADAVPRKLYKAGFHPATQTFQAIRIAVNDEVGEIERGLAAATRLLKSGGVLA 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++FH LED LVK+F  +  G  +        +    + + +    V P+  +VA N RS
Sbjct: 236 VITFHGLEDALVKRFIRAHEGAPLPAEIPSAHDRVNPLLRLVPP-AVKPSAREVADNPRS 294

Query: 307 RSAKLRAGMRT 317
           RSA+LR  ++ 
Sbjct: 295 RSARLRKAVKI 305


>gi|160896909|ref|YP_001562491.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1]
 gi|263446201|sp|A9BUJ8|RSMH_DELAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160362493|gb|ABX34106.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1]
          Length = 309

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALL---NPAP-GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
           H+ VLL++ +  L      P     +DATFG GG+SR   +       ++A D+DP A+ 
Sbjct: 7   HITVLLDEAVDALLDGAAQPVAGQWVDATFGRGGHSRRILQRLGPDGALLAFDKDPDAIE 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                      +FS+    F  L +      V GV+ DLGVSS QID  +RGFSF+  GP
Sbjct: 67  EAARI---TDARFSIRHEGFRHLSELP-AGSVQGVLMDLGVSSPQIDNPERGFSFRFEGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G S +D + +A+ + +  ++   GEE+ A  IA AIV RR+S         
Sbjct: 123 LDMRMDTTRGQSVADWLAEADAQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRNTAE 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQALRIF+N E+EEL Q L ++ + L  GG L+V+SFH
Sbjct: 183 LAELVAGAVRTREAGQNPATRTFQALRIFINAELEELEQALEASLRVLAPGGRLVVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P++ +VA N RSRSA +
Sbjct: 243 SLEDRIVKQFIAKHSKEV-YDRRAPFAVPTPMRLEALGR--IKPSEAEVAANARSRSAVM 299

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 300 RVARRTGVPA 309


>gi|239917869|ref|YP_002957427.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
 gi|281413637|ref|ZP_06245379.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
 gi|263456502|sp|C5CA38|RSMH_MICLC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239839076|gb|ACS30873.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
          Length = 331

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 107/324 (33%), Positives = 173/324 (53%), Gaps = 15/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGSN 60
           M +        H+PV+ ++V+ LL PA           V +D T G GG++ +      +
Sbjct: 1   MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH 60

Query: 61  V--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115
           +  I +DRD  A +   E +    ++   F  T+ ++ + +       VD  ++DLGVSS
Sbjct: 61  LRVIGIDRDAHAQAMAAERLGPLADRVIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            Q+D  +RGF++    PLDMRM  +   SA+ +V + + ++L RI+   GEE+ A  IA 
Sbjct: 121 YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR 180

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLR 233
           AIV+ R  AP +TT  L  +I+  V  +      HPA R+FQALRI VN E++ L   + 
Sbjct: 181 AIVRARAEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +   AL  GG L+V+S+HSLEDR+ K+  ++ +         +    H  V + +T+   
Sbjct: 241 AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            PT+E+++ NRR+ SAK+RA  + 
Sbjct: 301 KPTEEEISENRRASSAKVRAVEKI 324


>gi|223937428|ref|ZP_03629333.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
 gi|223893979|gb|EEF60435.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
          Length = 300

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           +L +V+A L    G    D T G  G++ +          +   DRD  AV   Q  + +
Sbjct: 1   MLAEVLAALKVKSGGKYADGTLGGAGHATAILAASSPNGWLFGCDRDGVAVEAAQARLAE 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           +  +F + +  +++L + +  +  DGV+ DLGVSS Q+D  +RGFSFQ+ GPLDMRM   
Sbjct: 61  FAGRFEISRGNYAELFETLEPESFDGVLLDLGVSSPQLDVAERGFSFQQEGPLDMRMDKR 120

Query: 141 GI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
              +A+D++N A+ ++L  I   LG+E Q+ R A AI   RQ  PF+TT  L+ LI++ +
Sbjct: 121 QQLTAADLLNHASAEELAEIFWKLGDEPQSRRFARAIEHDRQQRPFETTGQLAGLIER-L 179

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                 + HPATR FQALR+ VN+E+  L +GL  A + LK GG L V++FHSLEDR VK
Sbjct: 180 APRHGKKAHPATRVFQALRMAVNDELGSLERGLTGAVRILKPGGRLAVITFHSLEDRKVK 239

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +F   +S        +             + + +K V+P + +   N RSRSA+LR   +
Sbjct: 240 EFGRQKSRDYTFEGEVDVPELRKPRTPELKWVQRKAVLPGEAEQKENPRSRSAQLRIMEK 299

Query: 317 T 317
            
Sbjct: 300 I 300


>gi|78776996|ref|YP_393311.1| S-adenosyl-methyltransferase MraW [Sulfurimonas denitrificans DSM
           1251]
 gi|123550493|sp|Q30SF5|RSMH_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78497536|gb|ABB44076.1| methyltransferase [Sulfurimonas denitrificans DSM 1251]
          Length = 307

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 13/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            HVPVL  +V+         +++D T G GG++           +IA+D+D  A+    +
Sbjct: 5   PHVPVLYREVLEQFKNIKNGIVIDCTMGYGGHTSLILDANPNIKLIAIDQDQSAIDFSTK 64

Query: 77  TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y ++  + +  FS    ++        + G++ D+GVSS+Q+D  +RGFSF     
Sbjct: 65  RLEPYGDRVVIKKGRFSTIIKEILKEYDISDIRGILADIGVSSLQLDKKERGFSFFSENL 124

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                  + ++A+ V+N+ +  +L R+L   GE +   +IA  I     + PF + ++LS
Sbjct: 125 DMRMDEDAPLNANIVINEYSSHELQRVLLEYGELRNYKQIASFI---VSNRPFYSAKELS 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++  +   K  +IHPAT   QA+RI VNNE+ EL   L + ++       + ++SFHS
Sbjct: 182 DALRHLMPSGK--KIHPATLLMQAIRIEVNNELGELESLLDTIQERKFLDTKVAIISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F       +  +           ++   +TKK ++   +++  N RSRSAK
Sbjct: 240 LEDRIVKNRFNEWRASCICPQEAMRCTCTNDNSLGNILTKKPIIAQMDEIQANPRSRSAK 299

Query: 311 LRAGM 315
           LR   
Sbjct: 300 LRVFE 304


>gi|312880226|ref|ZP_07740026.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM
           12260]
 gi|310783517|gb|EFQ23915.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM
           12260]
          Length = 324

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 167/312 (53%), Gaps = 27/312 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           +  HVPV+L++V+  L P   +V ++D T GA G++R+         ++ +D+DP A+  
Sbjct: 1   MMLHVPVMLQEVLEALRPWEEQVCVVDGTLGAAGHARAILANCPRCRLVGIDQDPSALDE 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +L    F  L   +P          +FDLGVSSMQID  +RGFSF   
Sbjct: 61  ARLNLAPYGDRVTLIPGNFRDLSTLLPRYEIKVCSAFLFDLGVSSMQIDREERGFSFHGE 120

Query: 131 GPLDMRMSC----SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPF 185
           GPLDMRM       G++A+D+VN   + DL  +    GE+  A  IA AI + R +  P 
Sbjct: 121 GPLDMRMDSGTLSRGVTAADIVNSWELGDLIGLFRRYGEDPFAVPIARAIVMHRERYGPL 180

Query: 186 QTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            TT+ L +LI++T+     +    HPA R FQALRI VN+E+E L + L S         
Sbjct: 181 MTTESLVALIRRTLPAPAQRKAGTHPARRIFQALRIAVNDEMEALRETLESLPSFCGDPS 240

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++ +++HSLEDRLVK+   + + +                   +TKK +VP +E++  N
Sbjct: 241 TVVFITYHSLEDRLVKQHMKTWAAEG--------------KGLLVTKKPLVPREEEIREN 286

Query: 304 RRSRSAKLRAGM 315
           +RSRSAKLR   
Sbjct: 287 KRSRSAKLRVFR 298


>gi|33519608|ref|NP_878440.1| S-adenosyl-methyltransferase MraW [Candidatus Blochmannia
           floridanus]
 gi|42559456|sp|Q7VQJ5|RSMH_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33517271|emb|CAD83655.1| S-adenosyl methionine adenyltransferase; probably methyltransferase
           [Candidatus Blochmannia floridanus]
          Length = 321

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 116/315 (36%), Positives = 171/315 (54%), Gaps = 21/315 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D TFG GG+S            +IA+DRD  AV+ G E
Sbjct: 6   HNSVLLHEAINALNINPSGIYIDGTFGLGGHSHYILSKLTSHGRLIAMDRDWSAVNIG-E 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+  A FS++   + +      ++G++ DLGV   Q+    RGFSF + GP
Sbjct: 65  VLTKQDGRFSIIHAPFSKMLRCIYNMNLVGLINGILLDLGVCESQLTDSSRGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA + + +A+ KD+  +L   GEEK + +IA +IV +R+  P   T  L
Sbjct: 125 LDMRMDNSVGQSAYEWIAKASQKDIEWVLRTFGEEKLSKKIARSIVLKREVYPIDRTSAL 184

Query: 192 SSLIQKTVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           S +I  TV +     N R HPATRSF A+RI++N E+ E+ + L+   K L  GG L+V+
Sbjct: 185 SEIISDTVLYYNNRYNRRKHPATRSFLAIRIYINEELVEIMKILQDVFKLLAPGGRLVVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQEDVA 301
           SF+SLEDR+VKKF    S        +  ++            F+++ K  + PT  ++ 
Sbjct: 245 SFNSLEDRIVKKFINQYSRVFAYPPKIPLTHTQLLHKYSGTMKFKNLGK--IKPTVLEIK 302

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RSA LR   +
Sbjct: 303 KNIRARSAILRYAEK 317


>gi|167043610|gb|ABZ08304.1| putative MraW methylase family protein [uncultured marine
           microorganism HF4000_APKG2M17]
          Length = 314

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 100/316 (31%), Positives = 161/316 (50%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + +    H PVL   VI  L      + +D T G GG++ +          V+A+DRD  
Sbjct: 1   MSYASQYHEPVLCNTVIQGLVSRTDGIYVDGTLGGGGHTAALLDALDSSGRVVAIDRDDD 60

Query: 70  AVSCGQETMRDY--KEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           A+    + +       + ++ +  F+    L        V G + DLGVSS QID   RG
Sbjct: 61  AIRETSKRLSPDLASGRLTVLKGNFADVKLLLAEAGIAKVTGFLLDLGVSSHQIDEAGRG 120

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS +K GPLDMRM    G+ A+++VNQ +V++L R+L   GE+ ++ RIA AI++ R  +
Sbjct: 121 FSHRKDGPLDMRMDRSQGVDANELVNQLDVEELARLLRRFGEQPRSGRIARAIIRARPLS 180

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +    L   +       +       +R FQA RI VN E++ L + L  +E  ++ G 
Sbjct: 181 GTEDLSRLIRDLA-----PRGQEAKTLSRVFQAFRIAVNEELDALDRVLLDSEAIMEVGA 235

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+S+HSLEDR VK++  S + +    R +  +   P  ++ IT+K ++  + ++  N
Sbjct: 236 RLAVISYHSLEDRRVKRYMRSGNLEGEVQRDVFGNQITP--WRMITRKPIMADEAEIRDN 293

Query: 304 RRSRSAKLRAGMRTVE 319
            RSRSA+LR   R  +
Sbjct: 294 PRSRSARLRIVERLND 309


>gi|218248877|ref|YP_002374248.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801]
 gi|263447389|sp|B7K639|RSMH_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218169355|gb|ACK68092.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801]
          Length = 304

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 158/301 (52%), Gaps = 25/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+ VL ++ IA LN  PG   LDAT G+GG+SR          + A+DRD  A++     
Sbjct: 22  HISVLSQETIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81

Query: 78  MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + +   E+   +Q  F+     + +    G++ DLGVSS Q D  +RGFSF+  G LDMR
Sbjct: 82  LAELGSERLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     ++A +++NQ +   L  +    GEE+++  +A  IV+  Q     TTQ   ++ 
Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQ--QRPFKTTTQLAEAIA 197

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           Q      +  RIHPATR FQALRI VN E+  L + L  A + L+ GG + ++SFHSLED
Sbjct: 198 QTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDQAPQWLQPGGRIGIISFHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK  F   S                     +TKK ++P +E+   N RSRSAKLR   
Sbjct: 258 RIVKYRFRDSS-----------------WLTVMTKKPIIPQREEQLKNPRSRSAKLRLAE 300

Query: 316 R 316
           R
Sbjct: 301 R 301


>gi|15828964|ref|NP_326324.1| methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|20139101|sp|Q98Q75|RSMH_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14089907|emb|CAC13666.1| METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 299

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 156/307 (50%), Gaps = 16/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL+ VI  L   P  + +D T G  G+S    K       +I  D+D FA+  
Sbjct: 1   MQLHKPVLLKDVIENLEINPEGIYVDLTLGYAGHSSEILKKLSSKGKLIGFDQDSFAIEK 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +    + F L    F   + Y+    +      + DLGVSS+Q+D   RGFS+ K 
Sbjct: 61  SRQRLSQISDNFVLINDNFVNFKVYLDKMNISFVDGFLLDLGVSSVQLDFAHRGFSYSKL 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+      A D+VN  + + L +I     + K A ++A  IV    + P + T 
Sbjct: 121 GPLDMRMNLDQPLKADDIVNGYDQESLCKIFIENADVKLAKQVAKGIVN---NRPIKDTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+ ++  +   + +PA   FQA+RI VN+E+  L + L  +   LK    +++++
Sbjct: 178 ELVEVIRSSLPAALVRKKNPAKAVFQAIRIAVNDELIVLKKFLAQSLDFLKKDSKMLIIT 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHS+EDR+VK FF  +       R  I       V      K + PT+E++A NRR++S+
Sbjct: 238 FHSIEDRIVKDFFKRQVKNKHDRRLPIMEQKDYQV------KTIKPTEEEIAQNRRAKSS 291

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 292 KLRIIKK 298


>gi|134302412|ref|YP_001122382.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|263447543|sp|A4IZB0|RSMH_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134050189|gb|ABO47260.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 299

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 16/302 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKE 83
           ++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E  +    
Sbjct: 2   QESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQFSN- 60

Query: 84  QFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138
            F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GPLDMRM  
Sbjct: 61  -FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMDV 119

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQK 197
             GI+AS  + + +V DL+ I  + GEE+ A +IA  I    Q     +TT +L+ LI+ 
Sbjct: 120 SKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLELAELIRA 179

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG + V+SFHSLEDR+
Sbjct: 180 TI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAVISFHSLEDRI 237

Query: 258 VKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           VK+ F++       +     M+P ++     + ITKK     ++++  N RSRSA LR  
Sbjct: 238 VKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRVV 296

Query: 315 MR 316
            +
Sbjct: 297 EK 298


>gi|261749334|ref|YP_003257019.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497426|gb|ACX83876.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 151/302 (50%), Gaps = 13/302 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H PVLL++ I  L      + +D TFG GG+S +  K     +++IA D+D  A+    
Sbjct: 4   YHEPVLLKESIDNLVTDRNGIYVDVTFGGGGHSSAILKKLNENASLIAFDQDKEAIKN-N 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                    F         +   +  + V GV+ DLG+SS QID   RGFS Q +  LDM
Sbjct: 63  PIRDRRLHLFHKNFIHLKPILKKLRIEKVSGVLADLGLSSSQIDNPIRGFSHQLNCILDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+     SA D++N+ + ++L  I    GE K A  IA  I++ R   P  TT DL  +
Sbjct: 123 RMNQESTHSAIDIINRYSKEELFHIFYKYGEFKNAIIIAEKILEERLRKPITTTWDLVKI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +     K  +   + R FQ++RI VNNEI  L   L  +   +  GG + ++S+HS+E
Sbjct: 183 FFRKKTSFKKRKRFFS-RLFQSIRIEVNNEINVLKNFLLESSTIILPGGRMAIISYHSIE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+ K FF         + +++P       F+ I KKV+ P  +D+  N RSRSA+LR  
Sbjct: 242 DRITKYFFKKGVFHKKKMNNILP-------FKMIHKKVIQPRYQDIINNPRSRSARLRIA 294

Query: 315 MR 316
            +
Sbjct: 295 EK 296


>gi|319760278|ref|YP_004124216.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318038992|gb|ADV33542.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 330

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 22/318 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D TFG+GG+SR           +IA D+D  +V  G+ 
Sbjct: 3   HKSVLLHEAIEALNIDPSGIYIDGTFGSGGHSRLILSKLTKFGRLIAFDKDHLSVEIGKT 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +   +FS+   +FS+  +YV +      ++G++ DLG+   Q+   +RGFSF K GP
Sbjct: 63  IF-NQDSRFSIVHMSFSKAMNYVHNVKLLGSINGILLDLGICENQLFDANRGFSFIKDGP 121

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +G +A+  +  ++ + +T +L  LGEE+   +IA +I+  R+  P   T +L
Sbjct: 122 LDMRMDITTGQTAAQWIAMSSQEHITWVLKNLGEERFCKKIAKSILFHRRIRPIVRTHEL 181

Query: 192 SSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           S ++   +  S+  +     HPATRSF A+R+ +N E+E +A+ L+     L   G L++
Sbjct: 182 SKIVSDIIVPSRIKKNSWNKHPATRSFLAIRMHINKELEAIAKVLKDMYNLLSNKGRLVI 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-------AVFQSITKKVVVPTQEDV 300
           +SF+SLEDRLVK F    S     +  +  + +           F++I K  ++PT++++
Sbjct: 242 ISFNSLEDRLVKHFIYKHSRIFPELPKLALTESQIINIFSSSCQFKNIGK--IIPTKQEI 299

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N R+RSA LR   +  
Sbjct: 300 KENIRARSAILRCAEKID 317


>gi|225009958|ref|ZP_03700430.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-3C]
 gi|225005437|gb|EEG43387.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-3C]
          Length = 308

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 153/308 (49%), Gaps = 19/308 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
              H PV+L++ +A L   P  V +D TFG GG+S+   +       + A D+D  A++ 
Sbjct: 4   TTYHNPVMLQETVAGLAIDPKGVYVDVTFGGGGHSKEILRQLGPQGRLFAFDQDKDALAN 63

Query: 74  GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              T+ D +         F  Q   +   K V G++ D GVSS Q D G RGFS +  G 
Sbjct: 64  ---TLADARFTLIPENFRFIKQFLRFHGIKQVHGILADFGVSSHQFDEGSRGFSTRFEGD 120

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ SG I+A +VV      DL  +    G+ + +  IA AI+  R+  P +TT  L
Sbjct: 121 LDMRMNQSGAITAKEVVGSYAHDDLANMFFQYGDLRNSKAIAAAIIAFREIQPIETTAQL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +   +    + +I      +QA+RI VN EI+ + + L      L  GG L V+S+H
Sbjct: 181 KEALAPFLKGFNDAKI--LAPIYQAIRIEVNQEIQVIKEFLAQVPDLLFPGGRLSVLSYH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308
           SLEDRLVK+F  +   +    + +         F+   KKV    +PT+E+   N RSRS
Sbjct: 239 SLEDRLVKRFIRAGQFEGEPEKDIFG------HFEVPLKKVGGLQIPTKEEQRINTRSRS 292

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 293 AKLRVAEK 300


>gi|328778908|ref|XP_001120634.2| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase CG14683-like [Apis mellifera]
          Length = 388

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 120/327 (36%), Positives = 179/327 (54%), Gaps = 29/327 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PV++ +V+  L P+PGK+ +D TFGAGG+S    +      + ALDRDP A     + 
Sbjct: 61  HIPVMVNEVLHYLEPSPGKIFVDMTFGAGGHSMKILESSPNIKIFALDRDPIAHQFALKL 120

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y EQ       FS+L   +    V+       +FD G SSMQ+D G+RGFS  K GP
Sbjct: 121 SEKYPEQIIPLLGRFSELPQLLCKYKVNVNSIDGFLFDFGCSSMQLDIGERGFSLSKDGP 180

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187
           LDMRM         +A++V+ +   +DL  IL I G EK A +IA AI++ R      +T
Sbjct: 181 LDMRMDGFRYPQEPTAAEVLKEITEEDLAFILKIYGNEKYAKKIARAIIETRYTFRNLKT 240

Query: 188 TQDLSSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           TQ+L+ LI+  +   + ++     H AT++FQALRIFVNNE+ E+  G+  A   LK  G
Sbjct: 241 TQELAQLIESVISEKRFDQLGRFTHCATKTFQALRIFVNNELNEINYGIIIAGFYLKTNG 300

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-------------HPAVFQSITK 290
            LI +SFHSLED +VK+  ++   + +A +  +  +              +   ++ + K
Sbjct: 301 RLITISFHSLEDTIVKRHMSANITETVANKIPLKFSDYGKHYTLTEMKALNRIPWKMLHK 360

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            V+ PT+E++  N RSRSAK RA  + 
Sbjct: 361 HVITPTEEEINKNPRSRSAKFRAITKV 387


>gi|297569458|ref|YP_003690802.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925373|gb|ADH86183.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 303

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 161/316 (50%), Gaps = 31/316 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+  +V+  L PA G + +D   G GG++ +  +       +I  D D  A++  + 
Sbjct: 5   HQPVMPAEVLFWLAPAAGGIYVDGNLGLGGHAAAILEQSGPSGRLIGFDWDQEALARARS 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG------DRGFSF 127
            +  + ++  L    F +L+  + +     +DG++ DLG+SS+Q+D         RGFSF
Sbjct: 65  NLARFGDRVHLQPCNFIELEATLAELAISRIDGILLDLGLSSLQLDSSGEAAGAGRGFSF 124

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM      +A+D++   +  +L  I    GEE+QA RIA  +VK+RQ  P  
Sbjct: 125 RRPEPLDMRMDRRQELTAADLLRDLSAAELADIFYYYGEERQARRIAGWLVKQRQQTPIV 184

Query: 187 TTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L+ L+   V    + R IH ATR FQALRI VN E+E L + L  A   L      
Sbjct: 185 TTVQLAELVAAAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPSFLSPKARF 244

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFHSLEDRLVK+ F                       + +T + + P + ++  N R
Sbjct: 245 VVISFHSLEDRLVKRAFRE-----------------DPRLKILTTRPLQPQEAELQRNPR 287

Query: 306 SRSAKLRAGMRTVERS 321
           +RSAKLR   R  E +
Sbjct: 288 ARSAKLRVAERREETA 303


>gi|296140350|ref|YP_003647593.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM
           20162]
 gi|296028484|gb|ADG79254.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM
           20162]
          Length = 331

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVL  +V  LL PA    G + +DAT GAGG+S         + VI LDRD  A    
Sbjct: 10  HVPVLATRVRELLAPALAHDGAIYVDATLGAGGHSELILDTFPNARVIGLDRDTDAHDIA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  +  +F+     +  +   + D   + VD ++FDLGVSSMQ+D  +RGF++    
Sbjct: 70  GARLARFGGRFTAVHTRYDAIAAALDDLGIETVDAILFDLGVSSMQLDRAERGFAYSVDA 129

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +A+DV+N  +  DL RIL   G+E+ A +IA A++K R+  PF T+  
Sbjct: 130 PLDMRMNADDPLTAADVLNTYSHGDLARILQRYGDERFAGKIASAVLKEREREPFTTSGR 189

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+  T+    +    HPA R+FQALRI VN E+  L   +  A   L   G ++ +S
Sbjct: 190 LVELLYATIPAPARRTGGHPAKRTFQALRIEVNAELASLESAVPQALDVLAPEGRIVFLS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK   A+R+         +      A F+ +T+     T E++A N+R+   
Sbjct: 250 YQSLEDRIVKAELAARTRSTTPAGLPMDLPGTGATFELLTRGAERATDEEIAENQRAAPV 309

Query: 310 KLRAGMRTV 318
           ++RA  R  
Sbjct: 310 RMRAARRLA 318


>gi|170287862|ref|YP_001738100.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2]
 gi|262825881|sp|B1LCF9|RSMH_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170175365|gb|ACB08417.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2]
          Length = 299

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 172/314 (54%), Gaps = 27/314 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H+PV++ +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   
Sbjct: 1   MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEV 60

Query: 71  VSCGQETMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +E ++++ ++   F +       L   +  + VDG++ DLGVS+ Q+   +RGF+F
Sbjct: 61  LRIAEEKLKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTF 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM      +A  V+N+   ++L RI+   GEEK+ +R      K  ++ P  
Sbjct: 121 EREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFAR--RIARKIVENRPLN 178

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT DL   +++ +     +  + H AT++FQA+RI+VN E+E L + LR AE  L  GG 
Sbjct: 179 TTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+SFHSLEDR+VK+ F +                     + +T+K V P++E++  N 
Sbjct: 239 IVVISFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENP 281

Query: 305 RSRSAKLRAGMRTV 318
           R+RS +LRA  R  
Sbjct: 282 RARSGRLRAAERIE 295


>gi|225848381|ref|YP_002728544.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|262825703|sp|C1DTV7|RSMH_SULAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225643386|gb|ACN98436.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 293

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 167/307 (54%), Gaps = 22/307 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           + +H  VL  +V+           +DAT G GG+S    K    +  I +D+D +A+   
Sbjct: 1   MVEHYSVLHREVLEFTKDLKEGYFIDATVGGGGHSYLILKQNPKLKIIGVDKDDYALEVA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E ++D++ +FSL +++F  +   V D     V G++FD GVS  Q+    RGFSFQ+  
Sbjct: 61  KERLKDFEGRFSLVKSSFKDIDKIVKDLDVNPVVGILFDFGVSHFQLKL-PRGFSFQREE 119

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   +A  VVN      L  I+   GEEK A RIA  IV+ R+    +TT++
Sbjct: 120 PLDMRMDTSSELTAYYVVNYYPESRLFNIISKYGEEKFAKRIAKNIVEYRKKKKIETTKE 179

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++ ++   + +++RIHPAT++FQA+RI VNNE+ E+ + L  A   +   G++I +S
Sbjct: 180 LADIVYRSYPPNLRHSRIHPATKTFQAIRIEVNNELLEIEEALEKAIHIVSKEGIIITIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  F                         +TKK + P ++++  N  SRSA
Sbjct: 240 FHSLEDRIVKNTFKKY--------------KELKFLDILTKKPITPKEDEIRENPASRSA 285

Query: 310 KLRAGMR 316
           K+R   R
Sbjct: 286 KMRVARR 292


>gi|149022854|gb|EDL79748.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus]
 gi|149022855|gb|EDL79749.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus]
          Length = 406

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 136/345 (39%), Positives = 184/345 (53%), Gaps = 38/345 (11%)

Query: 10  SSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
                  +   H+PV++++V+  L P  G+V LD TFG+GG+S++  +   +  V ALDR
Sbjct: 61  EETDSEAMAKLHIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDR 120

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCG 121
           DP A +  +     Y  Q       FSQ +  +         VDGV+ DLG SSMQ+D  
Sbjct: 121 DPVAFTLAERLSEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAP 180

Query: 122 DRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI+
Sbjct: 181 ERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAII 240

Query: 178 KRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELA 229
           + R + P   TQ L+S+         +Y  K       H AT++FQALRIFVNNE+ EL 
Sbjct: 241 QARSTYPISRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELY 300

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF---------------ASRSGKVMAVRH 274
            GLR+A+K LK GG L+ +SFHSLEDR+VK+F                  R    M   H
Sbjct: 301 TGLRTAQKFLKPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDH 360

Query: 275 MIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            I        P  ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 361 EIEERRCVRAPLKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIK 405


>gi|225619046|ref|YP_002720272.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1]
 gi|263445852|sp|C0QWF7|RSMH_BRAHW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225213865|gb|ACN82599.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1]
          Length = 300

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L++V++ + P   K+ +DAT G GG++++   +   V + +RD   +   ++ ++
Sbjct: 11  HTPVMLKEVLSFI-PENAKIAVDATLGEGGHTKAMLDLNLEVHSFERDSAILEIAKKRLK 69

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +Y ++F  +  T+ ++ + + D     VD +++DLGVS       +RGFSF+ +  LDMR
Sbjct: 70  NY-DKFHYYNNTYDKMIEELDDSIIGNVDFMLYDLGVSLFHFKKAERGFSFKDNVRLDMR 128

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS-LI 195
           +  +  SA DV+N  + ++L R+L   GE   A ++A+ IVK R     +T+++L + + 
Sbjct: 129 LGLNEKSAYDVINGYSEEELERVLRDYGEISNARKMANVIVKERNRRKIETSRELENIIF 188

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +    LK  G+++V+S+HSLED
Sbjct: 189 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSISNIPSILKQNGVVVVMSYHSLED 248

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R++KKFF                     +F+ +  KV +PT E++  N  SRSAK+R   
Sbjct: 249 RIIKKFFKENEKTK----------NKDGIFKLLNNKVKLPTNEEIKSNPASRSAKMRIAQ 298

Query: 316 RT 317
           + 
Sbjct: 299 KV 300


>gi|224282633|ref|ZP_03645955.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139792|ref|ZP_07801985.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132302|gb|EFR49919.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
          Length = 370

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 158/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K      V+ +DRD
Sbjct: 1   MTDYASIHQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   E +      ++F    A F      + D+    V+ V  DLG+SS+QID  D
Sbjct: 61  AEALAMATERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  V+ +   ++L RI    GEE+ + +IA  IV+RR 
Sbjct: 121 RGFSYAHDAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRA 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 QEPLTTSAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G L+V S+HSLED+ VK F              +  +     F  +T+  V    +++A
Sbjct: 241 NGRLVVESYHSLEDKTVKSFMNEGLRVDAPADMPVVPDDAQPFFAPLTRGAVQAGPDEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LR   
Sbjct: 301 ANPRSASVRLRGVE 314


>gi|121611471|ref|YP_999278.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae
           EF01-2]
 gi|263504490|sp|A1WRK3|RSMH_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121556111|gb|ABM60260.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae
           EF01-2]
          Length = 334

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 167/312 (53%), Gaps = 15/312 (4%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H  VL E  +  L     PAP    +DATFG GG++R           ++A D+DP A++
Sbjct: 7   HTTVLREPAVDALLARAGPAPAGTWVDATFGRGGHTRLILCRLGPQGRLVAFDKDPEAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                MR    +FS+    F QL        + GV+ DLGVSS QID  +RGFSF+  GP
Sbjct: 67  EA---MRITDARFSIRHQGFGQLGQLP-AGSLAGVLMDLGVSSPQIDSPERGFSFRFDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA+D +  A+   + ++L   GEE+ A  IA AIV RRQ+         
Sbjct: 123 LDMRMDTTRGLSAADWLATADAGQIAQVLRDYGEERFAGLIAKAIVARRQARGPLARTAE 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +      ++    +PATR+FQALRIF+N E+EEL Q L ++   L+ GG L+V+SFH
Sbjct: 183 LADLVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALAASLLVLQPGGRLVVLSFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +    R +  +        ++ +  V P   +VA N R+RSA +
Sbjct: 243 SLEDRIVKQFIARHSRQ-PFDRRVPFAAPQAMQLLALAR--VRPDAAEVAANPRARSAIM 299

Query: 312 RAGMRTVERSIE 323
           R   RT     E
Sbjct: 300 RVAERTQAHGAE 311


>gi|313678556|ref|YP_004056296.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45]
 gi|312950217|gb|ADR24812.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45]
          Length = 300

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 151/307 (49%), Gaps = 15/307 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H+P+LL++ I  LN     + +D T G GG+S    K   N  ++  D+D FA+  
Sbjct: 1   MKNKHIPILLKEAINSLNIKSNGIYVDLTVGMGGHSAEILKKLDNGMLVGFDKDLFAIEE 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +      F L  + F  + D +       VDG++ DLG+SS Q+D  +RGFS+ K 
Sbjct: 61  SRKRLSKIGLNFQLIHSDFVNVTDELAKLNITAVDGILVDLGISSPQVDNAERGFSYNKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ + +  A  VVN  +  +L  I     E K A ++A+AI    ++ P  TT 
Sbjct: 121 ARLDMRMNTNQVLDAHFVVNNYDENNLISIFYNYAEVKLAKQVANAI---AKNRPINTTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LS +I+        ++ +P    FQA+RI VNNE   +   L  A   LK    L V+S
Sbjct: 178 ELSEIIKSAYPAKLLSQKNPCKAVFQAIRIEVNNEFSSIESMLSQALNLLKKDSSLAVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED LVKKFF +          M        + +        P++ ++  N RSRSA
Sbjct: 238 FHSLEDSLVKKFFGNLIKSK-HPSKMPIKEDKKYIVKVYN-----PSKSEIELNNRSRSA 291

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 292 KLRVLTK 298


>gi|148269200|ref|YP_001243660.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1]
 gi|281411498|ref|YP_003345577.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10]
 gi|262825857|sp|A5IIR1|RSMH_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147734744|gb|ABQ46084.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1]
 gi|281372601|gb|ADA66163.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10]
          Length = 299

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 172/314 (54%), Gaps = 27/314 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H+PV++ +VI  L P   K+ILD T G GG+S++  +   G  +I +D D   
Sbjct: 1   MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSKAILEHCPGCRIIGIDVDSEV 60

Query: 71  VSCGQETMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +E ++++ ++   F +       L   +  + VDG++ DLGVS+ Q+   +RGF+F
Sbjct: 61  LRIAEEKLKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTF 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM      +A  V+N+   ++L RI+   GEEK+ +R      K  ++ P  
Sbjct: 121 EREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFAR--RIARKIVENRPLN 178

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT DL   +++ +     +  + H AT++FQA+RI+VN E+E L + LR AE  L  GG 
Sbjct: 179 TTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+SFHSLEDR+VK+ F +                     + +T+K V P++E++  N 
Sbjct: 239 IVVISFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENP 281

Query: 305 RSRSAKLRAGMRTV 318
           R+RS +LRA  R  
Sbjct: 282 RARSGRLRAAERIE 295


>gi|165377209|ref|NP_001107000.1| probable methyltransferase-like protein 15 isoform 1 [Homo sapiens]
 gi|160012249|sp|A6NJ78|MET15_HUMAN RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|119588672|gb|EAW68266.1| methyltransferase 5 domain containing 1, isoform CRA_a [Homo
           sapiens]
          Length = 407

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 130/340 (38%), Positives = 187/340 (55%), Gaps = 39/340 (11%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           P   TQ L+S+         +Y  K       H AT++FQALRIFVNNE+ EL  GL++A
Sbjct: 247 PITRTQQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTA 306

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281
           +K L+ GG L+ +SFHSLEDR+VK+F                +  K   +     +    
Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEV 366

Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 367 SMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium
           castaneum]
 gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum]
          Length = 451

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 121/332 (36%), Positives = 174/332 (52%), Gaps = 30/332 (9%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
              HVPV++++V+  L P   + ILD TFGAGG+SR   +      ++ALDRDP A    
Sbjct: 120 SAPHVPVMVQEVLHFLKPEGNQTILDMTFGAGGHSRRILEQAPNVKLLALDRDPVAFGYA 179

Query: 75  QETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           Q+   ++  + +     FS++ +      +    +D ++FD G SSMQ D   RGFS   
Sbjct: 180 QKLAEEFPNRVTPLLGRFSEVPELLSLNKIRQNSIDAILFDFGCSSMQFDTPSRGFSVSH 239

Query: 130 SGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           +GPLDMRM         +A+DV+ +A  +DL +I+ + GEEK+A +IA   I  R     
Sbjct: 240 NGPLDMRMDSGRFPEDPTAADVLAKATEEDLYKIIKVYGEEKKARKIARAVIEARYLFKT 299

Query: 185 FQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT++L+ L+                 H AT++FQALRIFVNNE+ E+  GL  A K L
Sbjct: 300 LSTTEELADLVDSVFSGEIRLDKLQRPSHNATKTFQALRIFVNNELNEINYGLIIAHKYL 359

Query: 240 KAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAHPAVFQ 286
           K GG ++ ++FHSLED +VK+                  S     V   I      + + 
Sbjct: 360 KLGGRVVTLTFHSLEDTIVKRHLLGNLIANTPNPLPLKYSSHSFDVDGQIVKEVMESNWL 419

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           S+TK V+VP  E+V  N RSRSAKLRA +R  
Sbjct: 420 SLTKHVLVPKYEEVENNPRSRSAKLRAAIRVK 451


>gi|148273048|ref|YP_001222609.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|263446039|sp|A5CS59|RSMH_CLAM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147830978|emb|CAN01923.1| putative S-adenosyl-methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 318

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 9/298 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ + LL PA    G V++DAT G  G+S +F        ++ LDRDP A++  
Sbjct: 7   HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L    +  +   +       V GV FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 67  GERLARFGDRVNLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G++A+ VV + +  +L RI    GEEK A R A  IV+ R+  P  T+  
Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +IQ+    +     HPA R FQALRI VN E+  LA+ + +A   L  GG ++V S+
Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAVDRLAVGGRVVVESY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDR+VK+   +RS     V   +    H    + + +   +  Q ++A N R+ S
Sbjct: 247 QSLEDRIVKRELRARSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304


>gi|170781760|ref|YP_001710092.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|263446044|sp|B0RI49|RSMH_CLAMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169156328|emb|CAQ01476.1| S-adenosyl-methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 318

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 160/298 (53%), Gaps = 9/298 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ + LL PA    G V++DAT G  G+S +F        ++ LDRDP A++  
Sbjct: 7   HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++  L    +  +   +       V GV FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 67  GERLARFGDRVHLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G++A+ VV + +  +L RI    GEEK A R A  IV+ R+  P  T+  
Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +IQ+    +     HPA R FQALRI VN E+  LA+ + +A   L  GG ++V S+
Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAIDRLAVGGRVVVESY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDR+VK+    RS     V   +    H    + + +   +  Q ++A N R+ S
Sbjct: 247 QSLEDRIVKRELRVRSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304


>gi|315637346|ref|ZP_07892564.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22]
 gi|315478389|gb|EFU69104.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22]
          Length = 300

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL  +V+          I+D T G  G+S           +I  D+D  A++  ++
Sbjct: 4   PHIPVLYNEVLETFKDTNEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  ++ +    +  F  + +   D  + GV+ D+GVSS+Q+D  +RGF F+        
Sbjct: 64  RVEKFENRVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFESLTLDMRM 123

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                + A+ VVN  +  +L RI    GE ++  ++A  IV  R     +   D  S   
Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNRPFNSSKELADFLSKKM 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                    ++HPAT  FQA+RI VN+E+  L +   S EKA     ++ ++SFHSLEDR
Sbjct: 184 S------KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK +F   S   +   ++       + A+ + ITKK ++PT  ++  N RSRS+KLR  
Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRVF 297


>gi|229495663|ref|ZP_04389392.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC
           35406]
 gi|229317433|gb|EEN83337.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC
           35406]
          Length = 307

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 153/310 (49%), Gaps = 17/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+PVL  + +  L   P  V  D T G  G++    +      ++ + DRD  A++   
Sbjct: 2   YHLPVLCREAVEALLTRPNGVYADVTMGGAGHTCEILRHLGEKGHLYSFDRDQDAMANA- 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +F+   + F  L  ++   GV+    V+ DLGVSS   D  +RGFSF+  G 
Sbjct: 61  ----PVDPRFTFVASDFRYLSRWMRYFGVEHLDGVLADLGVSSHHFDTAERGFSFRFEGA 116

Query: 133 LDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           L      + +G +A+D++N  +V+ L+ +    GE K A RIA  I K R S  ++T + 
Sbjct: 117 LPDMRMNNRAGRTAADLLNTYSVEALSDLFYYYGELKDARRIAALIEKGRPSTGYRTIES 176

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++   +      R    ++ FQALRI VN+E+  L   L S    L  GG L+V+++
Sbjct: 177 LLEVLAPVLPPQPPLRRKKLSQLFQALRIEVNDELGALRSLLTSLTSLLAPGGRLVVLTY 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           HSLEDRLVK++     G   +V    P         +  + + +K ++P+  ++A N R+
Sbjct: 237 HSLEDRLVKEWGKGLLGTSQSVEDNDPMAAIYGQKRSEIEVVNRKPILPSDAEIAENPRA 296

Query: 307 RSAKLRAGMR 316
           RSAK+R   R
Sbjct: 297 RSAKMRILQR 306


>gi|332836127|ref|XP_003313021.1| PREDICTED: methyltransferase like 15 isoform 1 [Pan troglodytes]
          Length = 407

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/340 (38%), Positives = 186/340 (54%), Gaps = 39/340 (11%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           P   TQ L+ +         VY  K       H AT++FQALRIFVNNE+ EL  GL++A
Sbjct: 247 PITRTQQLAGIVAGAFPPSAVYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTA 306

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281
           +K L+ GG L+ +SFHSLEDR+VK+F                +  K   +     +    
Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEV 366

Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 367 SMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|88856505|ref|ZP_01131162.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814159|gb|EAR24024.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1]
          Length = 329

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H PVLLE+ I LL PA   PG V++D T G  G++ +F +    +  + +DRD  A++  
Sbjct: 19  HTPVLLERSIELLAPALEAPGAVLVDGTLGMAGHAEAFLQRFPELTLVGIDRDEDALAIA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  +     A + ++   +       V G+ FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 79  RRRLEPFASRTHFVHAVYEEIPTALASLGFPNVQGIFFDLGVSSLQLDRVERGFSYSQDA 138

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A  ++   +  +L RI    G+EK A R A  IV+ R+  P  T+  
Sbjct: 139 PLDMRMDASTPVTAEHILATYSELELRRIFYSYGDEKLAPRFASRIVQFREQQPLTTSAQ 198

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  LI      +     HPA R FQALRI VN E+  L + + +A  +L  GG ++V+++
Sbjct: 199 LVELIIAATPAAAQRAGHPAKRVFQALRIEVNQELSVLERAIPAAINSLALGGRMVVLAY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
            SLEDR+VK+    RS         +    H A  + + +     +  +   N R++  +
Sbjct: 259 QSLEDRIVKRELQRRSRSTAPAGLPVELPEHKAELKLLVRGSEQASDAEQQTNPRAKPVR 318

Query: 311 LRAGMR 316
           LRA  R
Sbjct: 319 LRAIER 324


>gi|263447881|sp|A7ZD05|RSMH_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 307

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 156/310 (50%), Gaps = 11/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
               H+ VLL++V++          +D T G  G+S +      N+  IA D+D  A++ 
Sbjct: 1   MQSPHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINF 59

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
             + +  +  +  ++++ FS+L   +    +     ++ D+GVSS+QID  DRGF    S
Sbjct: 60  SLKKLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSS 119

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
                     G SA DVVN  +  +L RI    GE K AS IA+ I+  R      + ++
Sbjct: 120 ALDMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKE 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+++I   +   K   + PA  +FQA+RI VN E++EL   L S EK      L+ +++F
Sbjct: 180 LANIIG--IAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+ F   +   +     +      +  + + +TKK +  +Q ++A N RS+S
Sbjct: 238 HSLEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKS 297

Query: 309 AKLRAGMRTV 318
           AKLR   +  
Sbjct: 298 AKLRVF-KIK 306


>gi|153952604|ref|YP_001398362.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|263445759|sp|A7H4D2|RSMH_CAMJD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152940050|gb|ABS44791.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 310

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K    +  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSETLLKNHPGLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS         
Sbjct: 64  RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
               S ISA +VVN    + LT I    GE   A  IA  I   R     ++ ++L  +I
Sbjct: 124 MNQNSKISAYEVVNAYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K     +  +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLED
Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGYLENLKPKNCILAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCKCGNNHSLGQIITKKSISASKEELLKNSRSSCAKMRA 301

Query: 314 G 314
            
Sbjct: 302 F 302


>gi|257061938|ref|YP_003139826.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802]
 gi|256592104|gb|ACV02991.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802]
          Length = 304

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 108/301 (35%), Positives = 158/301 (52%), Gaps = 25/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LDAT G+GG+SR          + A+DRD  A++     
Sbjct: 22  HISVLSQEMIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81

Query: 78  MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + +   ++   +Q  F+     + +    G++ DLGVSS Q D  +RGFSF+  G LDMR
Sbjct: 82  LAELGSDRLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     ++A +++NQ +   L  +    GEE+++  +A  IV+  Q     TTQ   ++ 
Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQ--QRPFKTTTQLAEAIA 197

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           Q      +  RIHPATR FQALRI VN E+  L + L  A + L+ GG + ++SFHSLED
Sbjct: 198 QTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDRAPQWLQPGGRIGIISFHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK  F                         +TKK ++P +E+   N RSRSAKLR   
Sbjct: 258 RIVKYRFRDSC-----------------WLTVMTKKPIIPQREEQLKNPRSRSAKLRLAE 300

Query: 316 R 316
           R
Sbjct: 301 R 301


>gi|311063958|ref|YP_003970683.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866277|gb|ADP35646.1| MraW S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 370

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 157/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K      V+ +DRD
Sbjct: 1   MTDYASIHQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   E +      ++F    A F      + D+    V+ V  DLG+SS+QID  D
Sbjct: 61  AEALAMATERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S    +  V+ +   ++L RI    GEE+ + +IA  IV+RR 
Sbjct: 121 RGFSYAHDAPLDMRMDVSQPLTAQCVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRA 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 QEPLTTSAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G L+V S+HSLED+ VK F              +  +     F  +T+  V    +++A
Sbjct: 241 NGRLVVESYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQAGPDEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LR   
Sbjct: 301 ANPRSASVRLRGVE 314


>gi|163846346|ref|YP_001634390.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524111|ref|YP_002568582.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl]
 gi|263445774|sp|A9WG80|RSMH_CHLAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446400|sp|B9LKK0|RSMH_CHLSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163667635|gb|ABY34001.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447990|gb|ACM52256.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl]
          Length = 301

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 177/310 (57%), Gaps = 22/310 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
              H PVLL +V+ +L P P    LDAT G GG++ +  +    G  ++ +D DP A++ 
Sbjct: 4   TFQHTPVLLTEVLTMLAPRPAGQYLDATVGGGGHALAVLQAAQPGGRLLGIDADPAALAA 63

Query: 74  GQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               ++     EQ  L   +F+ L            DG++FDLGVSS Q+D  +RGFSF 
Sbjct: 64  TAARLQAAGLIEQAVLCHGSFADLATLAATAGFGAFDGILFDLGVSSYQLDTPERGFSFT 123

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMR+    G++A+D+VN+ + ++L  I+ + GEE  A RIA AIV+ R++ PFQ 
Sbjct: 124 ADGPLDMRLDPTQGLTAADMVNRLSERELADIIFLYGEEHAARRIARAIVEHRRTQPFQR 183

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++ + V   ++ RIHPATR+FQALRI VN E++ L   L  A   L  GG L V
Sbjct: 184 TAELAEVVARAVGG-RHGRIHPATRTFQALRIAVNQELDRLRATLPQAVDLLAPGGRLAV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F  + +                     +TKK +VPT  +VA N R+R
Sbjct: 243 ISFHSLEDRIVKQFLRAEASGET------------PRLTIVTKKPIVPTAAEVANNPRAR 290

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 291 SAKLRVATRI 300


>gi|291276974|ref|YP_003516746.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter mustelae 12198]
 gi|290964168|emb|CBG40013.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter mustelae 12198]
          Length = 303

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 14/305 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
              H+PVLL +V+ +       +I+D T G GG+S++  +      +I +D+D  A +  
Sbjct: 3   TSPHIPVLLHEVLDIFKDIKEGIIIDCTLGFGGHSKALLEQNQSIRIIGIDKDKDARAYA 62

Query: 75  QETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +  +KE+F    + F +  +       + + GV+ D+GVSS Q+D   +GF F+   
Sbjct: 63  TKLLSPFKERFCCVASGFGEQIEPLIAQYGREIKGVLADIGVSSYQLDTPKKGFGFESEV 122

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                 + + ISA  ++N  +   L R+    GE +++ ++A  + + R    F   +  
Sbjct: 123 LDMRMDNDAHISAKTILNHYSAFALERVFREYGELRESKKLAQLLSQERTRTDFGDPKTF 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++ ++      +N +I P    +QALRI VN E+EEL +              L V++FH
Sbjct: 183 NAFLKA---HFRNPKILPL--VYQALRIEVNGELEELER--LLLHAQKLKDARLCVITFH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR++K+   S +   +     +      H      +TKK ++P+QE++  N RSRSA
Sbjct: 236 SLEDRILKQALKSYTKSCICPLEALKCTCGNHHQKGVLLTKKPIIPSQEEIKRNPRSRSA 295

Query: 310 KLRAG 314
           K+RA 
Sbjct: 296 KMRAF 300


>gi|284030811|ref|YP_003380742.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836]
 gi|283810104|gb|ADB31943.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836]
          Length = 324

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 115/295 (38%), Positives = 178/295 (60%), Gaps = 10/295 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++V+ALL P    PG V++DAT G GG+S +F +    + +I LDRDP A+   
Sbjct: 10  HVPVMLDRVVALLAPALQQPGSVLVDATLGLGGHSEAFLQRCPEARLIGLDRDPAALRLA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y  + +L  A + +L   + +     +DG++FDLGVSSMQ+D  DRGF++ +  
Sbjct: 70  GERLAPYAGRTTLVHAVYDELPRVLDELGVPAIDGILFDLGVSSMQLDEADRGFAYAQDA 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   +A+DV+N  +  DL RIL   GEEK A +IA  IV+ R++ PF  +  
Sbjct: 130 PLDMRMDPTAPTTAADVLNTYSAADLARILFQYGEEKFARKIADRIVRARETEPFSHSAR 189

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           LS L++  +   ++    HPA R+FQALRI VN+E++ L + L +A  AL   G ++V+S
Sbjct: 190 LSELVRDAIPQAARRTGGHPAKRTFQALRIEVNSELDVLRRALPAALGALALHGRIVVMS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +HSLEDR+ K+  A+ +   +     +    H    + +T+    PT+++VA N 
Sbjct: 250 YHSLEDRITKQTLAAATRSDVPDDLPVIPAGHEPYLKLLTRGAERPTEDEVAENP 304


>gi|171462979|ref|YP_001797092.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|262824846|sp|B1XT01|RSMH_POLNS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171192517|gb|ACB43478.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 316

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 181/314 (57%), Gaps = 25/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK------------VILDATFGAGGYSRSFCKMG---SNVIAL 64
           H PVLL + +  L    G             +++D TFG GG++++  K     +++I+ 
Sbjct: 5   HRPVLLAEAVTALV---GGPLIQNQNSENHILVIDGTFGRGGHTQALLKELNPSAHMISF 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           D+D  A++  Q+       +  +   +F+Q+  Y   + VDG++ DLG+SS Q+D   RG
Sbjct: 62  DKDLDAIAVAQKI---NDPRLKIVHDSFAQMDQYAEAESVDGILLDLGISSPQVDEAHRG 118

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF++ GPLDMRM+   G++A++ + QA+++++T ++   GEE+ A +IA AIV +R+  
Sbjct: 119 FSFRREGPLDMRMNTDHGLTAAEWLEQASLEEITHVIKTYGEERFAFQIARAIVAKREDG 178

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
               T    + +  +V  ++     PATR+FQALRIF+N E+E+L  GL++A K LK G 
Sbjct: 179 LPPKTTTQLASLVSSVVRTREAGQDPATRTFQALRIFINRELEDLELGLKAAMKLLKPGA 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302
            L V+SFHSLEDR+VK+F  + +   +     +   +   +  + I++  + P+  +V+ 
Sbjct: 239 RLAVISFHSLEDRIVKQFMQAHAKVDVPRGLPVREKDLPQSALKIISR--LKPSDAEVSE 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSA +R   +
Sbjct: 297 NPRARSAIMRVAEK 310


>gi|300871667|ref|YP_003786540.1| S-adenosyl-methyltransferase MraW [Brachyspira pilosicoli 95/1000]
 gi|300689368|gb|ADK32039.1| S-adenosyl-methyltransferase, MraW [Brachyspira pilosicoli 95/1000]
          Length = 297

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 168/299 (56%), Gaps = 16/299 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L+++++ + P    + +DAT G GG++++   +   V + +RD   +   +E ++
Sbjct: 7   HTPVMLKEILSFI-PENANIAVDATLGEGGHTKAMLDLNLEVHSFERDDKILEVAKERLK 65

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DYK +F  +  T+ ++ + + +     VD +++DLGVS       +RGFSF+    LDMR
Sbjct: 66  DYK-KFHYYNNTYDKMLEELNENVIGNVDFMLYDLGVSMFHFKKANRGFSFKDDVKLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +  +  SA DV+N  + K+L R+    GE   AS+IA+ IV  R+    +T+++L ++I 
Sbjct: 125 LGINNKSAYDVINSYSEKELERVFREYGEMHNASKIANIIVNERKKKSIETSKELENIIF 184

Query: 197 KTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                +K   +IHPAT  FQA+RI VN+E+  L + + +  K LK GG+  ++S+HSLED
Sbjct: 185 HHTDKAKRFGKIHPATLVFQAIRIEVNDELNILEKSISNISKILKNGGVAAIMSYHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F                      +F+ +  KV+ PT E++  N  SRSAKLR  
Sbjct: 245 RIVKRFLKDNEKTK----------NKDGIFKLLNSKVITPTNEEIKLNPASRSAKLRVA 293


>gi|319941799|ref|ZP_08016121.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804732|gb|EFW01599.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Sutterella wadsworthensis 3_1_45B]
          Length = 315

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 174/310 (56%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL  +    L   P  + +D TFG GG+SR   +       +IA DRDP        
Sbjct: 6   HLPVLSREAPEALVARPDGLYVDGTFGRGGHSRLILERLAQQGRLIAFDRDPE---AVAA 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +  A FS +++ + D   + VDG+  D+GVSS QID   RGFSF+  GPL
Sbjct: 63  AAAIKDPRFQIVHAPFSAMKERLGDLGIRQVDGIFLDIGVSSPQIDDPSRGFSFRFEGPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G +A++ + +A+V+++  +L   GEE+ A RIA AIV+ R  AP  TT  L+
Sbjct: 123 DMRMDTSCGETAAEWLARASVEEIAEVLADFGEERFAHRIARAIVEARSRAPITTTGALA 182

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L++  V  ++ +   HPATR+FQA+RI VN+E++EL   L SA   L   G L V+SFH
Sbjct: 183 KLVEAAVPKNRRDAAQHPATRTFQAVRIQVNHELDELKTTLESAGALLAPAGRLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+FF  R      +  R  +P+       F  + +  ++PT+ +   N R+RS
Sbjct: 243 SLEDRIVKRFFEKRLHPDRDLDPRLPMPAGFNAQPWFCDVIR--ILPTKSEAESNPRARS 300

Query: 309 AKLRAGMRTV 318
           + LR G RT 
Sbjct: 301 SVLRVGTRTA 310


>gi|227504684|ref|ZP_03934733.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC
           6940]
 gi|227198694|gb|EEI78742.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC
           6940]
          Length = 355

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 114/354 (32%), Positives = 191/354 (53%), Gaps = 28/354 (7%)

Query: 2   ESKSCKTMSSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRS 53
           + K+   +++ I++ I +   HVPV+ E++  LL PA        V++D T GAGG++  
Sbjct: 4   QDKNTDNVANNINYDIAENHGHVPVMRERMAQLLAPAIEAAGSNAVVVDGTLGAGGHADF 63

Query: 54  FCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVP 100
           F +     +V+ +DRD  +++   E +  ++++F    A F +           + D   
Sbjct: 64  FLRTFPNLHVVGVDRDGASLAAATERLEPFEDRFVGVNARFDEVGGEIARGEGAIFDIAR 123

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRI 159
           + G+ G +FDLGVSSMQ+D  +RGF+++   PLDMRM    GI+A+DV+N  +  DL RI
Sbjct: 124 EHGIAGALFDLGVSSMQLDQVERGFAYKTDAPLDMRMDPSHGITAADVLNTYSHGDLARI 183

Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALR 218
           L   G+E+ A +IA A++K R+  PF  ++ L  L+  T+   ++    HPA R+FQALR
Sbjct: 184 LKTYGDERFAGKIASAVLKEREKEPFSNSERLVELLYATIPAATRRTGGHPAKRTFQALR 243

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278
           + VN E+E + Q +     AL  GG  + +S+ SLEDR VK+ FA  +         +  
Sbjct: 244 VEVNRELEAIEQVIPVITDALHVGGRAVFMSYQSLEDRTVKQAFAELAASKTPAGLPMDL 303

Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332
                 F+++T+     + E++  N R+ S ++RA  R     +E +  +H P 
Sbjct: 304 PGTAPKFKTVTRGAEKASAEEIEENSRAASVRVRAIER-----LEGEPHLHPPG 352


>gi|28571637|ref|NP_788632.1| CG14683, isoform A [Drosophila melanogaster]
 gi|62472493|ref|NP_001014615.1| CG14683, isoform B [Drosophila melanogaster]
 gi|74869026|sp|Q9VGY5|MET15_DROME RecName: Full=Probable methyltransferase-like protein 15 homolog
 gi|15291185|gb|AAK92861.1| GH10770p [Drosophila melanogaster]
 gi|28381233|gb|AAO41540.1| CG14683, isoform A [Drosophila melanogaster]
 gi|61679326|gb|AAX52945.1| CG14683, isoform B [Drosophila melanogaster]
 gi|220945126|gb|ACL85106.1| CG14683-PA [synthetic construct]
 gi|220954938|gb|ACL90012.1| CG14683-PA [synthetic construct]
          Length = 356

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/339 (35%), Positives = 172/339 (50%), Gaps = 31/339 (9%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           S+I  T   HVPVL +  I  L P PG    D TFGAGG++R   +    + V ALDRDP
Sbjct: 18  SSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDP 77

Query: 69  FAVSCGQET--MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCG 121
            A    ++     ++K +       FS L     +       VDG++FD G SSMQ D  
Sbjct: 78  LAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEA 137

Query: 122 DRGFSFQKSGPLDMRM---SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IV 177
            RGFS  + GPLDMRM      G++A+DV+      DL +IL + GEEK A +IA   + 
Sbjct: 138 VRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVD 197

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGL 232
            R      +TT+ L+ +I+  +             H AT++FQA+RIFVNNE+ E+  G+
Sbjct: 198 ARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGM 257

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSN 279
             A + L+  G L+ ++FHSLED +VK+                  S         I  +
Sbjct: 258 VLANEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILES 317

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                ++ + + V+VP  ++VA N RSRSAKLRA ++T 
Sbjct: 318 LTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKTN 356


>gi|269115003|ref|YP_003302766.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis]
 gi|268322628|emb|CAX37363.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis ATCC 23114]
          Length = 300

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 162/304 (53%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +H+PVLL +VI  L+  P  + +D T G GG+S+   K      +I  D+D  A++  +E
Sbjct: 2   EHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESRE 61

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    + F L ++ F  +      +    VDG++ DLGVSS Q+D  +RGFS+  +  L
Sbjct: 62  KLIKISQNFILIKSDFRNITCELKKLNIDKVDGILADLGVSSPQLDDPNRGFSYSINSDL 121

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A +++N A  K++  IL    + K ++ IA AI    ++ P   +  L+
Sbjct: 122 DMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAI---VKNRPISDSFTLN 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+ ++      + +P+   FQA RI VN+E+  L++ L      LK  G + +++FHS
Sbjct: 179 QIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            ED +VKKF+ + +     ++ ++    H        +KV+ P+ ++   N+RSRSAKLR
Sbjct: 239 KEDVIVKKFYQNLNYFDPKLKKILIVETHKW-----HQKVIFPSSKEEEINKRSRSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 VITK 297


>gi|330444381|ref|YP_004377367.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58]
 gi|328807491|gb|AEB41664.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58]
          Length = 296

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 20/307 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H+PVL+ + ++L + +  +   D T GAGG++++F     ++    A DRDP A++
Sbjct: 1   MAPSHIPVLVHECLSLFSQSTPRKFCDVTVGAGGHAKAFLTAYPSITSYDASDRDPLALT 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              + +  +KE+  L  A+F  L   + +   DGV+ DLGVSSMQ+D   RGFSFQ    
Sbjct: 61  LSSQALEPFKERVHLRHASFQDLSHSLEEHVYDGVIADLGVSSMQLDDLSRGFSFQGEEH 120

Query: 133 LDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
                     GISAS+V+     ++L +I    GEE    + A AIV  R+    +T +D
Sbjct: 121 YLDMRMDPTQGISASEVLQCLREEELGKIFREYGEEPLWRQAAKAIVHFRKHKRIETVRD 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L     +     +   +IHP T  FQALR+FVN E ++L   L SA + L   G ++++S
Sbjct: 181 LKEATSRVFPSYRLRKKIHPLTLIFQALRVFVNGEDQQLRTLLESAMRWLAPQGRVVIIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           F S EDR VK+FF                     + + +TKKV++PT +++  N RSRSA
Sbjct: 241 FCSSEDRPVKQFFRHAEATG--------------LGRVVTKKVIMPTFQEIRRNPRSRSA 286

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 287 KLRCFEK 293


>gi|66809695|ref|XP_638570.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4]
 gi|60467186|gb|EAL65220.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4]
          Length = 367

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 173/314 (55%), Gaps = 23/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H PV +++V+ +LNP P KV +DATFG GG+SR   +      VIA DRDP      +  
Sbjct: 59  HKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCKDCYVIAFDRDPKVFEMTKPL 118

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKS-- 130
             ++K++     +TFS ++  + +K +D      +++D GVSS QID  DRGFSF+K   
Sbjct: 119 RSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFSFKKELE 178

Query: 131 --GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
               + M  + S I+A D++N  + KDL  I    GEEK    IA+ I+++R+  P + T
Sbjct: 179 GPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKIEPIKNT 238

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL  +++ ++ +    +    +R F++LR+FVN+E+ E+  GL   E+ L+    L+ +
Sbjct: 239 SDLVKIVESSIPYPMALKT--ISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPNSPLLAI 296

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHS+EDR+VK++    +                  F    K  + P++E++ +N RS+S
Sbjct: 297 SFHSIEDRIVKQYLNKYTT----------IEEPTFKFSPTYKSPIFPSKEELEWNPRSKS 346

Query: 309 AKLRAGMRTVERSI 322
           A LR  +RT  + I
Sbjct: 347 AILRTAIRTSNKPI 360


>gi|328542958|ref|YP_004303067.1| ribosomal RNA small subunit methyltransferase H [polymorphum gilvum
           SL003B-26A1]
 gi|326412704|gb|ADZ69767.1| Ribosomal RNA small subunit methyltransferase H [Polymorphum gilvum
           SL003B-26A1]
          Length = 346

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/292 (48%), Positives = 192/292 (65%), Gaps = 5/292 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             HVPVLL  V+  L PA G+VI+D TFGAGGYSR+F + G+ VI +DRDP A++ GQ+ 
Sbjct: 17  ARHVPVLLSAVLDTLRPAEGEVIVDGTFGAGGYSRAFLEAGAAVIGVDRDPDAIAGGQDL 76

Query: 78  MRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +R    +  L    F+ L  +      + VDGVV DLGVSSMQID  +RGFSF + GPLD
Sbjct: 77  VRASGGRLVLVPGRFADLDAHARACGHEAVDGVVLDLGVSSMQIDQAERGFSFMRDGPLD 136

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  +G SA+DVVN    +DLTRI+G+LGEEK+A+ +A AI + R   PF  T +L+ L
Sbjct: 137 MRMEQAGPSAADVVNTLPARDLTRIIGLLGEEKRAAAVARAISEARAEKPFTRTGELADL 196

Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++ V    K   IHPATR+FQALRI+VN E+ + A+ L +AE+ L+ GG L+VVSFHSL
Sbjct: 197 VERVVGRAPKKAHIHPATRTFQALRIYVNGELHQAAEALTAAERILRPGGRLVVVSFHSL 256

Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           EDR+VK+F A R+  +    RH+  +   PA F+ + K  V   + + + N 
Sbjct: 257 EDRIVKRFLADRTRVRAGGSRHLPEAEVPPATFELLVKGAVEADEAETSANP 308


>gi|222100677|ref|YP_002535245.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Thermotoga neapolitana DSM 4359]
 gi|262825854|sp|B9KA96|RSMH_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221573067|gb|ACM23879.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Thermotoga neapolitana DSM 4359]
          Length = 300

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 180/316 (56%), Gaps = 28/316 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H+PV++ +VI  L P   K+ILD T G GG++R+  +   G  +I +D D   
Sbjct: 1   MRKYTHYHIPVMVREVIEYLKPEDEKIILDCTVGEGGHARAILEHCPGCKLIGIDVDSEV 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   ++ ++D+ ++ SLF+A++     L   +  + VDG++ DLGVS+ Q+   +RGF+F
Sbjct: 61  LQIAEKKLKDFSDRVSLFKASYRDADFLLKTLEIEKVDGILLDLGVSTYQLKGENRGFTF 120

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM     I+A  V+N+ + ++L RI+   GEEK+ +R      K  ++ P  
Sbjct: 121 EREEPLDMRMDLESEITAQKVLNELSEEELARIIFEYGEEKRYAR--RIARKIVENRPLN 178

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQG-LRSAEKALKAGG 243
           TT DL   + + +     +  + H ATR+FQA+RI+VN E+E L +  L  AEK L+ GG
Sbjct: 179 TTLDLVKAVSEALPSHEIRRRKRHFATRTFQAIRIYVNRELENLREFLLNKAEKLLRVGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+SFHSLEDR+VK+ F +                     + +T+K V P++E+V  N
Sbjct: 239 RIVVISFHSLEDRIVKEAFRNS-----------------RKLRILTEKPVRPSEEEVREN 281

Query: 304 RRSRSAKLRAGMRTVE 319
            RSRSA+LRA     E
Sbjct: 282 PRSRSARLRAAELVEE 297


>gi|194741008|ref|XP_001952981.1| GF17544 [Drosophila ananassae]
 gi|190626040|gb|EDV41564.1| GF17544 [Drosophila ananassae]
          Length = 361

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/333 (36%), Positives = 173/333 (51%), Gaps = 31/333 (9%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
              HVPVL +  I  L P PG   +D TFGAGG++R   +    + V ALDRDP A    
Sbjct: 29  QPPHVPVLCDTAIEHLQPLPGGTYIDMTFGAGGHTRRIFEKCPEAKVYALDRDPVAHQLA 88

Query: 75  QET--MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +E      YK +       FS +     +       ++G++FD G SSMQ D  +RGFS 
Sbjct: 89  RELSQKEKYKGRLIPLLGKFSDIPKLFEEHGLSRNSLNGILFDFGCSSMQFDEAERGFSI 148

Query: 128 QKSGPLDMRM---SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSA 183
            K GPLDMRM      G++A++V+++    DL RIL I GEEK A +IA   I  R+   
Sbjct: 149 SKDGPLDMRMDGGHSGGVTAAEVLSKIEETDLARILRIYGEEKAAKKIARGLIDARKALV 208

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             +TT+ L+ L++  +             H AT++FQALRIFVNNE+ E+  G+  A + 
Sbjct: 209 QIETTKQLADLVEDILSSGPRRDKLQRPSHSATKTFQALRIFVNNELNEINYGMVLANEI 268

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVF 285
           L+  G L+ ++FHSLED +VK+                  SG  +     +  +     +
Sbjct: 269 LRREGRLVTITFHSLEDTIVKRHINGNVVAGAANPLPLKYSGHDIIDDPEMLQSLVQTNW 328

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           + + + V+VP  E+VA N RSRSAKLRA ++  
Sbjct: 329 KPLHRHVIVPDAEEVARNSRSRSAKLRAAVKVN 361


>gi|326919741|ref|XP_003206136.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Meleagris gallopavo]
          Length = 410

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 135/354 (38%), Positives = 190/354 (53%), Gaps = 39/354 (11%)

Query: 2   ESKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           +S++ + + S  +   G  H+PV++E+VI  L+P  G+  LD TFGAGG+S +  +  SN
Sbjct: 56  KSETKELLHSTENKNFGRLHIPVMVEEVINCLSPQSGQRFLDMTFGAGGHSTALLEKASN 115

Query: 61  --VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGV 113
             + ALDRDP A    Q+    Y +Q       FSQ +  +         +DGV+ D G 
Sbjct: 116 ITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGC 175

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQA 169
           SSMQ D  +RGFS QK GPLDMRM         +A+DVVN  + + L  IL   GEEK A
Sbjct: 176 SSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHA 235

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFV 221
            +IA AIV+ R   P   TQ L+S++      S             H AT++FQ LRIFV
Sbjct: 236 KKIASAIVQARSIYPITRTQQLASIVAGAFPASALYARKDLLQRPTHVATKTFQGLRIFV 295

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRH 274
           N+E+ EL  GL++AEK LK GG L+ +SFHSLEDR++K+F            G    +R 
Sbjct: 296 NDELHELLIGLKTAEKFLKPGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSRQKIRR 355

Query: 275 MIPSNAHP------------AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + + +              + +  I KKV+ P  +D+  N R+RSAKLRA ++
Sbjct: 356 ALKNCSKEENTQEFPHGKSNSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 409


>gi|121998878|ref|YP_001003665.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1]
 gi|263456068|sp|A1WYV1|RSMH_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121590283|gb|ABM62863.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1]
          Length = 324

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 176/316 (55%), Gaps = 13/316 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
           +    T   H PVL    +A L+  P    +DAT+G GG++R   +       +   DRD
Sbjct: 10  AEQEPTATTHRPVLYGAALAALDVRPDGCYVDATYGRGGHARGILERLGPQGRLWVADRD 69

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDR 123
           P A++  +ET+ D   + ++  A  ++L   + ++G    VDG++ DLG+SS Q+D  DR
Sbjct: 70  PEALAHARETLAD-DPRCTVLGAELAELPRLLAEQGLAAGVDGLLADLGISSPQVDNPDR 128

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQ 181
           GFSFQ+ GPLDMRM  + G SA+ ++ + + +D+  +L  LGEE+ A RIA AIV  R  
Sbjct: 129 GFSFQRDGPLDMRMDPTTGESAAALLERLSARDIAGVLRQLGEERHAGRIARAIVAARDA 188

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P +TT  L+ L+++ V   +  R HPATR+FQALRI VN+E+ +L + L      L  
Sbjct: 189 GDPPRTTLALARLVEQAVPRREPGR-HPATRTFQALRIAVNDELGQLDRFLEGVIDLLAP 247

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR VK+F    S    +     +P        + + +  +   + +V
Sbjct: 248 GGRLAVIAFHSLEDRRVKRFIRRASSVGDLPPSVPVPPAGCQPRLRPLGRD-LRADEGEV 306

Query: 301 AFNRRSRSAKLRAGMR 316
           A N R+RSA LR   R
Sbjct: 307 AGNPRARSAVLRVAER 322


>gi|317506606|ref|ZP_07964398.1| MraW methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316255115|gb|EFV14393.1| MraW methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 316

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 171/309 (55%), Gaps = 8/309 (2%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L +V++LL PA   P  V++D T G GG++R+  +      V+ +DRD  A+   +E +
Sbjct: 1   MLNRVVSLLAPAFDAPDPVLVDGTLGLGGHTRALLERFPTLRVVGMDRDAKAIEVAKERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
               ++     A + +++  + D + V G + DLGVSSMQ+D  +RGF++ K  PLDMRM
Sbjct: 61  GGLADRVRFVHARYDEVERALGDGENVQGYLLDLGVSSMQLDQAERGFAYSKDAPLDMRM 120

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  ++A +V+     K+L R+L   GEE+ A+RIA  IV+RR + P  ++ +L  LI 
Sbjct: 121 DTSAELTAHEVLATYGEKELARVLRTYGEERFAARIAAEIVRRRATEPLASSAELVRLID 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +    K    HPA R+FQALR+ VN+E+  L   L  A  AL   G ++V+++ SLED
Sbjct: 181 DVIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAVLPKALAALAPQGRIVVLAYQSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK  FA  +     +   +      A F S+T+   +  +E+ + N R+ S +LRA  
Sbjct: 241 RIVKDEFARATTSRTPIGLPVELPGFEAEFVSLTRGAELAGEEETSENPRAASVRLRAVE 300

Query: 316 RTVERSIED 324
           R      E+
Sbjct: 301 RVSGNRGEE 309


>gi|288574844|ref|ZP_06393201.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570585|gb|EFC92142.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 332

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 179/309 (57%), Gaps = 25/309 (8%)

Query: 19  DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           +HVPV+LE+V+  L        I+DAT G GGYS +      G NV  +DRDP A++   
Sbjct: 4   EHVPVMLEEVLEYLKKTGSSGPIVDATLGLGGYSEAILARIEGVNVFGIDRDPQALTMAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++F   +  FS L+  + D     V GVVFDLGVS+MQI   +RGFSF+++GP
Sbjct: 64  ERLSPFGKRFIPIKGNFSDLKGLLEDIDGIPVGGVVFDLGVSNMQISLPERGFSFRENGP 123

Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQ 189
           LDMRM+    G SA+D+V +    +L+ I    GEE+ A  IA +IV+ R+ + P + T 
Sbjct: 124 LDMRMNHEDGGESAADMVRELTAPELSEIFRKYGEERFAWPIAKSIVRYREKSGPIEDTD 183

Query: 190 DLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L  +I+K +     +  + HPA + FQALRI VN E++ L +GL SA + +  GG+++V
Sbjct: 184 TLVEVIRKALPAPVMRKAKGHPARKVFQALRIAVNKEMDALDEGLNSALEVISPGGVVVV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           VS+HSLEDR+VK  F     +                   +TKK +VP+  ++  N +SR
Sbjct: 244 VSYHSLEDRIVKWKFRGWKDQGE--------------GTILTKKALVPSDLEIENNTKSR 289

Query: 308 SAKLRAGMR 316
           SAKLRA  +
Sbjct: 290 SAKLRAFAK 298


>gi|25028617|ref|NP_738671.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
 gi|259507675|ref|ZP_05750575.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
 gi|30173070|sp|Q8FNT2|RSMH_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23493903|dbj|BAC18871.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164722|gb|EEW49276.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
          Length = 338

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/327 (32%), Positives = 173/327 (52%), Gaps = 20/327 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F  +    +VI LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIADHVREMGDRAVIVDATLGAGGHAEHFLTVFPEAHVIGLDRDENALR 71

Query: 73  CGQETMRDYKEQFSLFQATFS-----------QLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F   +  F             + D    +G+ G +FDLGVSSMQ+D  
Sbjct: 72  DAGERLARFGDRFLGVKTRFDGLSQVLATGEGDILDLARKEGISGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM    GI+A+D++N  +  D+ R+L   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDPTQGITAADILNTYSHGDIARVLKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E L+  L     AL
Sbjct: 192 EKEPFTTSARLVELLYDTIPAATRRTGGHPAKRTFQALRVEVNRELESLSNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ S ED+LVK+FF   +         +        F+ +T+     ++ +
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKRFFTELTTSKTPPGLPVDLPGTAPRFRQVTRGAETASEAE 311

Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDS 326
           +  N R+   K+RA  R  E +   ++
Sbjct: 312 IEENPRAAPVKVRAIERIAEHTENTEN 338


>gi|93007204|ref|YP_581641.1| methyltransferase [Psychrobacter cryohalolentis K5]
 gi|92394882|gb|ABE76157.1| methyltransferase [Psychrobacter cryohalolentis K5]
          Length = 383

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 172/353 (48%), Gaps = 37/353 (10%)

Query: 2   ESKSCKTMS------SAIHHTIGDHVPVLLEKVIALL----------------NPAPGKV 39
            + + K M       +        H  VLL++ +A +                +     +
Sbjct: 35  STSTQKLMQEPSEDQATSDELSFVHDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGI 94

Query: 40  ILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
            +DATFG GG+SR      ++   +I  D+DP A+S  +E + +   +  +   +F+ L 
Sbjct: 95  YVDATFGRGGHSRLLLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLT 153

Query: 97  D---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152
           D    +    VDG++ DLG+SS QID G RGFSF + G +DMRM    G S ++ +   +
Sbjct: 154 DSLAAMRITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVD 213

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
            + L  +L   GEE+ + RIA AI +         +    + + K  + +     HPAT+
Sbjct: 214 DETLANVLYEFGEERHSRRIARAIKQMDSYD----STLALAEVIKVAHPNWQRGKHPATQ 269

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMA 271
           SFQA+RIF+NNE+ ++   L  +   LK GG L V+SFHSLEDR +K+F    S G+   
Sbjct: 270 SFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPE 329

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324
             ++      P  F    +  V P++ +++ N RSRSA LR   RT    + D
Sbjct: 330 DENLPMPPKRPRYFSKPKR--VGPSKAEISHNPRSRSAWLRMATRTDADYVAD 380


>gi|57167704|ref|ZP_00366844.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228]
 gi|57020826|gb|EAL57490.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228]
          Length = 311

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 144/301 (47%), Gaps = 9/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVLL +V            LD T G GG+S S  K      +IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+K++     + FSQ+ D +       + G++ D+GVSS Q+D   RGF+       
Sbjct: 64  RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSDFLD 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
                   ISA +++N    + L+ I    GE      IA  I + RQ    ++ ++L  
Sbjct: 124 MRMNQDVKISAFELINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I KT    ++     AT  FQA+RI VN E+E L   L   EK      +L ++ FHSL
Sbjct: 184 IIGKTKQNHRSVSK--ATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK +F   +   +            + ++ + I KK + P++E++  N RS  AK+
Sbjct: 242 EDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIINKKAITPSKEEIMINSRSSCAKM 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|293363236|ref|ZP_06610120.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2]
 gi|292553095|gb|EFF41844.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2]
          Length = 302

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 158/305 (51%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G GG+S    +  +    +IA D+D +A+   Q 
Sbjct: 5   HYSVLLEETIKSLNLQPDGIYVDLTLGMGGHSAKILEKLNKNGMLIAFDKDDYALEISQR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++F L ++ +SQL+          VDG++ DLG+SS QID  +RGFS+ K   L
Sbjct: 65  RLSSISDKFILIKSDYSQLKSQLANHNIYKVDGIIADLGISSPQIDNANRGFSYNKDAKL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S    A  VVN  +V+ L  I     + K AS++A AI    ++ P  +T  L 
Sbjct: 125 DMRMDTSQELDAEIVVNTYSVEHLRDIFLKYADVKHASQVAKAI---EKNRPIVSTMQLV 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+     +     +PA   FQALRI VNNE+  L   L  A   LK    L +++FHS
Sbjct: 182 EVIKSAYPAALLRAKNPAKAVFQALRIEVNNELYSLKTMLDDAVSLLKTNASLSIITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDRLVK  FAS +   +  +  I   A    F S   K V P+  ++  N+RSRSAKLR
Sbjct: 242 IEDRLVKHKFASLTASKIPAKMPI---ADKKTFLS---KQVKPSSNEIQENKRSRSAKLR 295

Query: 313 AGMRT 317
              + 
Sbjct: 296 ILTKI 300


>gi|157164915|ref|YP_001466663.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826]
 gi|112800495|gb|EAT97839.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826]
          Length = 334

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
              H+ VLL++V++          +D T G  G+S +      N+  IA D+D  A++  
Sbjct: 29  QSPHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINFS 87

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +  +  +  ++++ FS+L   +    +     ++ D+GVSS+QID  DRGF    S 
Sbjct: 88  LKKLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSSA 147

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                    G SA DVVN  +  +L RI    GE K AS IA+ I+  R      + ++L
Sbjct: 148 LDMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKEL 207

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++I   +   K   + PA  +FQA+RI VN E++EL   L S EK      L+ +++FH
Sbjct: 208 ANIIG--IAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFH 265

Query: 252 SLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+ F   +   +     +      +  + + +TKK +  +Q ++A N RS+SA
Sbjct: 266 SLEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKSA 325

Query: 310 KLRAGMRTV 318
           KLR   +  
Sbjct: 326 KLRVF-KIK 333


>gi|78188031|ref|YP_378369.1| methyltransferase [Chlorobium chlorochromatii CaD3]
 gi|88909192|sp|Q3ANW1|RSMH_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78170230|gb|ABB27326.1| methyltransferase [Chlorobium chlorochromatii CaD3]
          Length = 328

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/323 (30%), Positives = 168/323 (52%), Gaps = 20/323 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIAL 64
           +      H PVL  +V+A L      + +D T G G +S +  +            +I +
Sbjct: 1   MALHDTYHDPVLAAEVVATL-VQRSGIYVDGTLGGGSHSLALLQALQAQGLLESSLLIGI 59

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSM 116
           D+D  A++   E ++ ++    L +  F  +   V            V GV+ DLGVSS 
Sbjct: 60  DQDSDALAMAAERLQAWQPYTRLLKGNFRDMASLVQQLCDAEGRACAVTGVLLDLGVSSF 119

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH- 174
           Q+D  +RGFS+ +SGPLDMRM  +  ++A++++N A+  +L RI    GEE ++  +A  
Sbjct: 120 QLDTAERGFSYMRSGPLDMRMDNTAPLTAAELINHADEAELARIFYHYGEEPRSRALARA 179

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + +R +   F TT++L++L+++  +  +   I   +R FQALRI VN+E+  L + L  
Sbjct: 180 VVQQREKMGNFTTTEELAALVRRLTHGGEKAVIKTLSRLFQALRIAVNDELGALHEVLEG 239

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVV 293
           A + L   G L V+S+HSLEDR+VK FF   +      + + +           +TK+ +
Sbjct: 240 ALELLDGNGRLAVMSYHSLEDRVVKHFFTHHAQCDWGPKGVALREPLSQGALTIVTKRPM 299

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           + + +++  N R+RSAKLR   +
Sbjct: 300 LASADEIERNPRARSAKLRVAAK 322


>gi|282862166|ref|ZP_06271229.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE]
 gi|282563191|gb|EFB68730.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE]
          Length = 312

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 176/310 (56%), Gaps = 15/310 (4%)

Query: 24  LLEKVIALLNP-------APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           +L++ + LL P        P  V++D T G GG+S +         +IALDRD  A+   
Sbjct: 1   MLQRCLDLLAPALEATGPRPP-VVVDCTLGLGGHSEALLSAFPEARLIALDRDKEALRLS 59

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y ++ +L  A + +L + +       V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 60  GERLAAYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDA 119

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GI A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  
Sbjct: 120 PLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSNSAR 179

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++  + K    +PA R+FQALRI VN E+  L + + +A ++L  GG + V+S
Sbjct: 180 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRSLAVGGRIAVLS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+  A+ +         +    +    + +T+   +PT+E+VA NRR+  A
Sbjct: 240 YHSLEDRLVKQVLAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRAAPA 299

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 300 RLRGAERIRE 309


>gi|292616071|ref|XP_689063.3| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 2 [Danio rerio]
 gi|292616073|ref|XP_002662882.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Danio rerio]
          Length = 402

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 121/335 (36%), Positives = 174/335 (51%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PV++++V+  LN  PG+++LD TFGAGG+S++  +      V+A DRDP A    Q+ 
Sbjct: 67  HTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQL 126

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +Y+ +       FS+L + +P        VD  + D G SSMQ+D  +RGFS  K GP
Sbjct: 127 AEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGP 186

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          A+DVVN  + + L  +L   GEE+   +IA AI + R   P   T
Sbjct: 187 LDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRT 246

Query: 189 QDLSSLIQKTVY----FSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             L+S++         +++ +R     H AT++FQALRIFVN+E+ EL  GLR A+  L+
Sbjct: 247 LQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLR 306

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----------- 289
             G L V++FHSLEDRL K+F           R +          Q              
Sbjct: 307 PKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGG 366

Query: 290 --------KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                   KKV+ P++E+V  N R+RSAKLR  +R
Sbjct: 367 NSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVR 401


>gi|72161506|ref|YP_289163.1| methyltransferase [Thermobifida fusca YX]
 gi|88909224|sp|Q47QX7|RSMH_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71915238|gb|AAZ55140.1| bacterial methyltransferase [Thermobifida fusca YX]
          Length = 330

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 168/295 (56%), Gaps = 10/295 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+LE+V+ LL P    PG + +D T G GG++ +  +      ++ +DRD  A+   
Sbjct: 20  HVPVMLERVVELLAPALQQPGAIAVDGTLGLGGHAEALLRAHPGLRLVGVDRDTTALERA 79

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ +  Y ++  L  A +S +   + +     V G++FDLGVSS Q+D  +RGF++    
Sbjct: 80  RQRLAPYADRIDLVHAVYSDIPRILDELGIDRVHGLLFDLGVSSPQLDEAERGFAYSYDA 139

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   +A+D+VN     +LTRI  + GEE+ A+RIA AIV++R   P +TT  
Sbjct: 140 PLDMRMDRTQERTAADIVNTYPASELTRIFRVYGEERFAARIAQAIVRQRAKEPVRTTGV 199

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L++  +   ++ +  HPA R+FQALRI VN+E+  L + L +A   L   G ++V+S
Sbjct: 200 LADLVRSAIPAAARRSGGHPAKRAFQALRIEVNSELSILERALPAALSRLAVAGRIVVLS 259

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +HSLEDR+ K+     S         +P        + +T+   +PT+++ A N 
Sbjct: 260 YHSLEDRITKRVLTELSTDSTPPGLPVPLPDRQPELRLLTRGAELPTEQETAANP 314


>gi|296166032|ref|ZP_06848481.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898597|gb|EFG78154.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 334

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL + + LL PA         G V+LDAT GAGG++  F        +I LDRDP 
Sbjct: 10  HVPVLLGRCVELLTPALTRHDADGSGAVLLDATLGAGGHAERFLTDLPGLRLIGLDRDPN 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L        Y   + VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEITRARLARFADRITLVHTRYDGLAAALAESGYGAIESVDGMLFDLGVSSMQLDRAER 129

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM      +A+D++N  +   L  IL   GEE+ A RIA  +V+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPESPLTAADILNTYDEAALADILHRYGEERFARRIAAQVVRRRAR 189

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           APF +T DL +L+ + +    +    HPA R+FQALRI VN+E+  L     +   AL  
Sbjct: 190 APFASTADLVALLYQAIPAPARRTGGHPAKRTFQALRIAVNDELNSLRAATPAGLDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA+       V   +    H   F+S+T        ++V 
Sbjct: 250 GGRMVVLAYQSLEDRIVKRLFAAAVASRTPVDLPVELPGHEPRFRSLTHGAERADADEVE 309

Query: 302 FNRRSRSAKLRAGMRTVERSIEDDS 326
            N RS + +LRA  R  + + + D+
Sbjct: 310 RNPRSAAVRLRAVQRVQQSTGKADA 334


>gi|126332528|ref|XP_001380257.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           [Monodelphis domestica]
          Length = 442

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 134/341 (39%), Positives = 188/341 (55%), Gaps = 38/341 (11%)

Query: 14  HHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H T+   H+PV++ +VI  L P  G+ ILD TFG+GG+SR+  +   +  +  LDRDP A
Sbjct: 101 HETMKKLHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELDVTLYVLDRDPTA 160

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGF 125
            +  Q+    Y +Q     + FSQ +  +         VDGV+ DLG SSMQ+D  +RGF
Sbjct: 161 YAIAQQLSELYPKQIRALLSQFSQAEAMLMKAGVQPGTVDGVLLDLGCSSMQLDTPERGF 220

Query: 126 SFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           SF+K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R 
Sbjct: 221 SFRKDGPLDMRMDGGRYPDMHTAADVVNALDQQALALILRTYGEEKYAKKIASAIVQARS 280

Query: 182 SAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLR 233
             P   TQ L+S++      +             H AT++FQALRIFVNNE+ EL  GL+
Sbjct: 281 IYPITRTQQLASIVAGAFPTAALYERKDLLQRSTHIATKTFQALRIFVNNELNELYVGLK 340

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF------------------ASRSGKVMAVRHM 275
           +A+K L+ GG L+ +SFHSLEDR+VK+F                    ++S  +      
Sbjct: 341 TAQKFLRPGGRLVALSFHSLEDRIVKRFLHGIDVTEKLSPKKRQKIIQAQSLCLNQENEE 400

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              ++ P  ++ I KKVV P  ++V  N R RSAKLRA ++
Sbjct: 401 FFRSSSPLEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAIK 441


>gi|296454440|ref|YP_003661583.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183871|gb|ADH00753.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 359

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 159/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H+PVLL+  + L+ PA      +  D T G  G+S +F K      +I +DRD
Sbjct: 1   MVDVANIHLPVLLDDCVNLMVPALEHENAIAADCTLGLAGHSIAFLKAAPQARLIGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A+    E M      ++F    A F QL   + D+    VD V  DLG+SS+QID  D
Sbjct: 61  SEALGLATERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  ++   +  +L RI    GEE+ + +IA AIV RR 
Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  
Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLED+ VK F A      +     +        F  +T+  +   + ++A
Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKAGEHEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 ANPRSASVRLRAVE 314


>gi|294101810|ref|YP_003553668.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM
           12261]
 gi|293616790|gb|ADE56944.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM
           12261]
          Length = 300

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 180/312 (57%), Gaps = 26/312 (8%)

Query: 17  IGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           + +H+PV+L++VI  L N    ++I+DAT G GGY+     +     ++ +DRD  A+S 
Sbjct: 1   MVEHIPVMLKEVIESLKNVESPQMIVDATLGLGGYAEEILNVFPATLLVGIDRDEQAISL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY--VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            Q+ +  + E+  ++ + FS +       +   DG+VFDLGVS++Q+   +RGFSFQ  G
Sbjct: 61  AQKRLVSFAERVHIYNSPFSAIAMVLSKENAEPDGIVFDLGVSNLQLSSPERGFSFQNDG 120

Query: 132 PLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQ 186
           PLDMRM      SG SA+ +VN  + K+L  I    GEE+ + RIA  IV+ R ++ P Q
Sbjct: 121 PLDMRMEGTSGESGYSAAQIVNTFSEKELADIFWKYGEERYSRRIATGIVRFREKNGPIQ 180

Query: 187 TTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            T  L   I+ ++     +    HPA + FQALRIFVN+E++EL +GL+ A ++L  GG+
Sbjct: 181 RTFQLVEAIRSSLPAPVQRKMGGHPARKVFQALRIFVNDELQELEKGLQGALESLAPGGV 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++VVS+HSLEDR+VK                            +T++ + P++E+V  N 
Sbjct: 241 IVVVSYHSLEDRIVKYAMKDWKTSD--------------HGDLLTRRPLKPSEEEVEKNY 286

Query: 305 RSRSAKLRAGMR 316
           ++RSAKLRA  +
Sbjct: 287 KARSAKLRAFRK 298


>gi|296125293|ref|YP_003632545.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563]
 gi|296017109|gb|ADG70346.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563]
          Length = 311

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 99/311 (31%), Positives = 170/311 (54%), Gaps = 17/311 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M + I   I  H PV+L++V++ + P   K+++DAT G GG++++   +   V + +RD 
Sbjct: 10  MDNDIELNIV-HTPVMLKEVLSYI-PENAKIVIDATLGEGGHTKAMLDLNLEVHSFERDS 67

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125
             +   +  ++DY   F  +  T+ ++ + + +K     D +++DLGVS       +RGF
Sbjct: 68  TILDIAKRRLKDYPN-FHYYNNTYDKMMECLDEKVIGNADFMLYDLGVSLFHFKKAERGF 126

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF+ +  LDMR+  +  SA DV+N  + ++L R+    GE   A ++A  IVK R     
Sbjct: 127 SFKDNTMLDMRLGINEKSAYDVINGYSEEELERVFRDYGELSNARKMARIIVKERDKRKI 186

Query: 186 QTTQDLSS-LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T+++L S +   T    +  +IHPAT  FQA+RI VN+E+  L + + +    LK  G+
Sbjct: 187 ETSKELESIIFHNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSILNIPNILKNNGV 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++S+HSLEDR+VK+FF                     +F+ +  KV +PT +++  N 
Sbjct: 247 AVIISYHSLEDRIVKRFFKENEKTK----------NKDGIFKLLNNKVKLPTNDEIKSNP 296

Query: 305 RSRSAKLRAGM 315
            SRSAK+RA  
Sbjct: 297 ASRSAKMRAVQ 307


>gi|291320327|ref|YP_003515589.1| S adenosyl methyltransferase [Mycoplasma agalactiae]
 gi|290752660|emb|CBH40633.1| S adenosyl methyltransferase [Mycoplasma agalactiae]
          Length = 300

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 15/307 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H+P+LL + I  LN     + LD T G GG+S    K   N  ++  D+D FA+  
Sbjct: 1   MENKHIPILLNEAIESLNIKSNGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEE 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +      F L  + F+ + D +    +   DG++ DLG+SS Q+D  +RGFS+ K 
Sbjct: 61  SRKRLSKIGSNFQLIHSDFNNVADELAKLNISAVDGILVDLGISSPQVDNAERGFSYSKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ +    A  VVN  +  +L  I     E K A ++A+AI+K+R   P  TT 
Sbjct: 121 ARLDMRMNTNQALDAHFVVNNYSEDELITIFYNYAEVKLAKQVANAIIKKR---PINTTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ +I+        +  +P    FQA+RI VNNE   +   L  A   LK    L +++
Sbjct: 178 ELAEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIIT 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED ++KKFF +          M  +       +    KV  P++ +++ N RSRSA
Sbjct: 238 FHSLEDSIIKKFFGNLIKSK-HPSKMPINEE-----KKYIVKVYSPSKAEISENNRSRSA 291

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 292 KLRVLTK 298


>gi|289704963|ref|ZP_06501378.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58]
 gi|289558299|gb|EFD51575.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58]
          Length = 349

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 171/313 (54%), Gaps = 15/313 (4%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           H+PV+ ++V+ LL PA           V +D T G GG++ +      ++  I +DRD  
Sbjct: 30  HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDVH 89

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +    ++   F  T+ ++ + +       VD  ++DLGVSS Q+D  +RGF+
Sbjct: 90  AQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 149

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  +   SA+ +V + + ++L RI+   GEE+ A  IA AIV+ R  AP 
Sbjct: 150 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARDEAPI 209

Query: 186 QTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  V  +      HPA R+FQALRI VN E++ L   + +   AL  GG 
Sbjct: 210 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 269

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+S+HSLEDR+ K+  ++ +         +    H  V + +T+    PT+E+++ NR
Sbjct: 270 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 329

Query: 305 RSRSAKLRAGMRT 317
           R+ SAK+RA  + 
Sbjct: 330 RASSAKVRAVEKI 342


>gi|332295500|ref|YP_004437423.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium
           narugense DSM 14796]
 gi|332178603|gb|AEE14292.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium
           narugense DSM 14796]
          Length = 298

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 171/311 (54%), Gaps = 26/311 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           +++   H+PVLL +V+   N APGKV++D T GAGG+S +F K    G  ++  D+D  A
Sbjct: 3   NYSKDIHIPVLLNEVLENSNLAPGKVVVDGTIGAGGHSFNFLKKILPGGFLLGFDKDIEA 62

Query: 71  VSCGQETMRD--YKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           V    E +     +  F++F   F       +++P    D    DLG+S+MQI   +RGF
Sbjct: 63  VKLAVEKLSSTFDRNSFTIFNDKFENFVKYLNFLPYGKFDLFFLDLGLSTMQIKESNRGF 122

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K   LDMRM     ++ASD +N A+ +++  +    GEE ++ ++A  I  RR+  P
Sbjct: 123 SFMKDEKLDMRMDLKEKMTASDWLNSASEEEMEEVFRKYGEEPKSRKLAKMISLRRREKP 182

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F++T DL+ L++K   + +    HPATR FQA+RI +N+EIE L   LR A   + + G 
Sbjct: 183 FESTMDLAQLVKKIYPYGRR---HPATRIFQAIRIVINDEIEHLEATLREATNHINSLGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +IV+SFHS EDR+VK  F +   +                 + ITKK ++ ++ +   N 
Sbjct: 240 IIVISFHSGEDRVVKWTFKNLEKEG--------------RGRVITKKPIIASESETKENP 285

Query: 305 RSRSAKLRAGM 315
            +RSAK+R   
Sbjct: 286 SARSAKMRVWE 296


>gi|326315562|ref|YP_004233234.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372398|gb|ADX44667.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 311

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 26  EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78
           ++ +  L     P+P  V +DATFG GG+SR   +       ++A D+DP A+       
Sbjct: 15  DEAVDALLGGAGPSPAGVWIDATFGRGGHSRRILERLGPQGRLVAFDKDPEAIQEAARI- 73

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
                +FS+    F  L +   ++   G++ DLGVSS QID   RGFSF+  GPLDMRM 
Sbjct: 74  --TDARFSIRHEGFRHLAELP-ERSAAGILMDLGVSSPQIDSPGRGFSFRFDGPLDMRMD 130

Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G S +D +  A+V  +  ++   GEE+ A  IA AI  RR       T    + +  
Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
               ++    +PATR+FQALRIF+N E+EEL   L ++ + L  GG L V+SFHSLEDR+
Sbjct: 191 GAVKTREAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+F A  S +V   R    +   P   +++ +  + P   +V  N R+RSA +R   RT
Sbjct: 251 VKQFIAQHSKEV-YDRRAPFAAPQPMRLKALDR--IKPGASEVEANPRARSAVMRVAERT 307

Query: 318 VERS 321
              +
Sbjct: 308 ELPA 311


>gi|310287093|ref|YP_003938351.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17]
 gi|309251029|gb|ADO52777.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17]
          Length = 370

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 158/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
           +      H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K      V+ +DRD
Sbjct: 1   MTDYASIHQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122
             A++   E +      ++F    A F      + D+    V+ V  DLG+SS+QID  D
Sbjct: 61  AEALAMATERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETD 120

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  S   +A  V+ +   ++L RI    GEE+ + +IA  IV+RR 
Sbjct: 121 RGFSYAHDAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRA 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  
Sbjct: 181 QEPLTTSAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G L+V S+HSLED+ VK F              +  +     F  +T+  V    +++A
Sbjct: 241 NGRLVVESYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQSGPDEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LR   
Sbjct: 301 ANPRSASVRLRGVE 314


>gi|163854995|ref|YP_001629293.1| S-adenosyl-methyltransferase MraW [Bordetella petrii DSM 12804]
 gi|263445873|sp|A9I4S5|RSMH_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163258723|emb|CAP41022.1| methyltransferase [Bordetella petrii]
          Length = 363

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 117/347 (33%), Positives = 181/347 (52%), Gaps = 35/347 (10%)

Query: 16  TIGDHVPVLLEKVIALL---------NPAPG-------------KVILDATFGAGGYSRS 53
              +H PVLL   +  L             G              V +D TFG GG+SR 
Sbjct: 1   MEFEHRPVLLAPTVDALLLADFAGKGAARSGRQDGAQADARAQRGVFVDGTFGRGGHSRE 60

Query: 54  FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGV 107
             +       ++  D+DP A++   E +     + ++    F+ +++       + +DGV
Sbjct: 61  LLRRLGPEARLVVFDKDPQAIAVANE-LAAGDARVTVVHGGFAAMREELAARGIESIDGV 119

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS Q+D   RGFSF + GPLDMRM    G + +D + QA+V ++  ++   GEE
Sbjct: 120 MLDLGVSSPQLDDAGRGFSFMREGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A ++A AI  RR + P +TT +L+  +   V   +    HPATR+FQALRI++N E+E
Sbjct: 180 RFAFQVAKAIAARRATRPLRTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284
           EL++ L SA + L  GG L V+SFHSLEDR+VK+  A+ +   +A   +    S     +
Sbjct: 239 ELSRALASALELLAPGGRLAVISFHSLEDRMVKQCIAAAARPAVAHARLPLRESELPQPL 298

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331
           ++S+ +  V    E++A N R+RSA LR   RT E    D +   +P
Sbjct: 299 YRSLGR--VQADDEEIAGNARARSAVLRVAERTTEPLGADGAAAFVP 343


>gi|148377639|ref|YP_001256515.1| S-adenosyl-methyltransferase [Mycoplasma agalactiae PG2]
 gi|263456537|sp|A5IYG2|RSMH_MYCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148291685|emb|CAL59071.1| S adenosyl methyltransferase [Mycoplasma agalactiae PG2]
          Length = 300

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 99/307 (32%), Positives = 152/307 (49%), Gaps = 15/307 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H+P+LL + I  LN     + LD T G GG+S    K   N  ++  D+D FA+  
Sbjct: 1   MENKHIPILLNEAIKSLNIKSDGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEE 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +      F L  + F+ + D +       VDG++ DLG+SS Q+D  +RGFS+ K 
Sbjct: 61  SRKRLSKIGSNFQLIHSDFNNVADELAKLNINAVDGILVDLGISSPQVDNAERGFSYSKD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ +    A  VVN  +  +L  I     E K A ++A+AI    ++ P  TT 
Sbjct: 121 ARLDMRMNTNQALDAHFVVNTYSEDELITIFYNYAEVKLAKQVANAI---IKNRPINTTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ +I+        +  +P    FQA+RI VNNE   +   L  A   LK    L +++
Sbjct: 178 ELAEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIIT 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED ++KKFF +        +  I         +    KV  P++ +++ N RSRSA
Sbjct: 238 FHSLEDSIIKKFFGNLIKSKHPSKMPIKEE------KKYIVKVYSPSKAEISENNRSRSA 291

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 292 KLRVLTK 298


>gi|311085963|gb|ADP66045.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 302

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 116/305 (38%), Positives = 181/305 (59%), Gaps = 19/305 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           + +++I  L      + +D+TFG GG+S    K       + ++DRDP A S G +    
Sbjct: 1   MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKIK-- 58

Query: 81  YKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS+L D+  ++ +    +G++FDLGVSS+QID   RGFSF+  GPLDMR
Sbjct: 59  -DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117

Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    GISAS+ + ++N+K+++ +L   GEE+ + +IA+AI +R Q     +T +L+++I
Sbjct: 118 MNPNYGISASEWLFESNIKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++SFHSLED
Sbjct: 178 KKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           RLVKKF    S K +    M  +            + I +  ++PTQ ++  N R+RS+ 
Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294

Query: 311 LRAGM 315
           LR   
Sbjct: 295 LRIAE 299


>gi|148695830|gb|EDL27777.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus
           musculus]
 gi|148695831|gb|EDL27778.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus
           musculus]
          Length = 339

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 134/334 (40%), Positives = 184/334 (55%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +  V ALDRDP A +  ++ 
Sbjct: 5   HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +         +DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 65  SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 124

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 125 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 184

Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S+         VY  K       H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 185 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 244

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH-----P 282
            GG L+ +SFHSLEDR+VK+F                +  +   +     +        P
Sbjct: 245 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 304

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 305 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 338


>gi|27229243|ref|NP_084066.2| probable methyltransferase-like protein 15 [Mus musculus]
 gi|81906157|sp|Q9DCL4|MET15_MOUSE RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|26362646|dbj|BAB22281.2| unnamed protein product [Mus musculus]
 gi|109730967|gb|AAI17550.1| Methyltransferase 5 domain containing 1 [Mus musculus]
 gi|109732458|gb|AAI15927.1| Methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123225263|emb|CAM17438.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231531|emb|CAM24681.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231533|emb|CAM25317.1| methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 406

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 134/334 (40%), Positives = 184/334 (55%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +  V ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +         +DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S+         VY  K       H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH-----P 282
            GG L+ +SFHSLEDR+VK+F                +  +   +     +        P
Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405


>gi|305433210|ref|ZP_07402366.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20]
 gi|304443911|gb|EFM36568.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20]
          Length = 311

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 9/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVLL +V            LD T G GG+S S  K      +IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+K++     + FSQ+ D +       + G++ D+GVSS Q+D   RGF+       
Sbjct: 64  RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSDFLD 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
                 + ISA +++N    + L+ I    GE      IA  I + RQ    ++ ++L  
Sbjct: 124 MRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I KT    ++     AT  FQA+RI VN E+E L   L   EK      +L ++ FHSL
Sbjct: 184 IIGKTKQNHRSVSK--ATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK +F   +   +            + ++ + I+KK + P++E++  N RS  AK+
Sbjct: 242 EDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIISKKAITPSKEEIMINSRSSCAKM 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|311086539|gb|ADP66620.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 302

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 19/305 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           + +++I  L      + +D+TFG GG+S    K       + ++DRDP A S G +    
Sbjct: 1   MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKIK-- 58

Query: 81  YKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS+L D+  ++ +    +G++FDLGVSS+QID   RGFSF+  GPLDMR
Sbjct: 59  -DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117

Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T +L+++I
Sbjct: 118 MNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++SFHSLED
Sbjct: 178 KKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           RLVKKF    S K +    M  +            + I +  ++PTQ ++  N R+RS+ 
Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294

Query: 311 LRAGM 315
           LR   
Sbjct: 295 LRIAE 299


>gi|294155677|ref|YP_003560061.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600063|gb|ADE19559.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145]
          Length = 300

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 154/303 (50%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL + I  LN  P  + +D T G GG+S    +      +IA D+D +A+   Q+ 
Sbjct: 5   HYSVLLNETIDSLNIKPDGIYIDLTLGMGGHSTKILEKLKSGLLIAFDKDKYALEISQKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +    ++F L  + +S+L+  +       VDG++ DLG+SS Q+D  +RGFS+ K   LD
Sbjct: 65  LSQISDKFILVNSDYSKLKSELFKLNINKVDGIIADLGISSPQVDDANRGFSYNKDARLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  I A  +VN  + + L  I     + K A ++A  I    ++ P   T +L  
Sbjct: 125 MRMDTNQEIDAHYIVNNYSCEQLVDIFLKYADVKLAKQVAKVI---EKNRPINNTLELVE 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+     +     +PA   FQALRI VNNE++ L   L  A + LK    L +++FHS+
Sbjct: 182 IIKSAYPAAILRAKNPAKAVFQALRIEVNNELDSLKTMLDDAIELLKENSSLSIITFHSI 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK  F       M  +  I         +  + K + P+ +++  N+RSRSAKLR 
Sbjct: 242 EDRLVKHKFTELCSSKMPAKMPI------NEIKYFSTKQIKPSAKELLENKRSRSAKLRI 295

Query: 314 GMR 316
             +
Sbjct: 296 LTK 298


>gi|325123733|gb|ADY83256.1| S-adenosylmethionine methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 285

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 15/289 (5%)

Query: 40  ILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
            +DATFG GG++R         + V A D+DP A+      +     +F++  A+F+ ++
Sbjct: 2   YIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVASA-LAQEDPRFTIIHASFADIK 60

Query: 97  DYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152
           + + +     VDG++ DLGVSS Q+D  +RGFSF + GPLDMRM    G++A++ + +  
Sbjct: 61  EKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEIE 120

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
            + L  I+   GEE+ + RIA AI +        TT  L+ L++      + ++ HPATR
Sbjct: 121 EEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQLAELVKTAHPKWEKHK-HPATR 176

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           +FQA+RI +N E++++   L  A   LK  G L V+SFHSLEDRL+K+F    S     +
Sbjct: 177 TFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDI 236

Query: 273 RHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
              +P         + I++  V  ++E+V  N RSRSA LR   R  ++
Sbjct: 237 GWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 283


>gi|262831581|sp|Q1Q846|RSMH_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 342

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 31/339 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRS 53
            +        H  VLL++ +A +                +     + +DATFG GG+SR 
Sbjct: 8   QATSDELSFVHDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRL 67

Query: 54  FCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGV 107
                ++   +I  D+DP A+S  +E + +   +  +   +F+ L D    +    VDG+
Sbjct: 68  LLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLTDSLAAMRITQVDGL 126

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLG+SS QID G RGFSF + G +DMRM    G S ++ +   + + L  +L   GEE
Sbjct: 127 MADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDETLANVLYEFGEE 186

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + + RIA AI +         +    + + K  + +     HPAT+SFQA+RIF+NNE+ 
Sbjct: 187 RHSRRIARAIKQMDSYD----STLALAEVIKVAHPNWQRGKHPATQSFQAMRIFINNELG 242

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVF 285
           ++   L  +   LK GG L V+SFHSLEDR +K+F    S G+     ++      P  F
Sbjct: 243 DVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLPMPPKRPRYF 302

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324
               +  V P++ +++ N RSRSA LR   RT    + D
Sbjct: 303 SKPKR--VGPSKAEISHNPRSRSAWLRMATRTDADYVAD 339


>gi|237752673|ref|ZP_04583153.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376162|gb|EEO26253.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 311

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 166/307 (54%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLLE+V+         +++D T G GG++ +  +   N+  I +D+D  A++   +
Sbjct: 4   PHIPVLLEQVLDSFKTLKSGILIDCTLGFGGHTHALLEAYPNLEIIGIDQDSDALAFTAK 63

Query: 77  TMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  + E+FS  +  +S      L +    + + G++ D+GVSSMQ D  +RGF F    
Sbjct: 64  RLSVFGERFSYKKGRYSAVVRELLSNKALQENIVGILADIGVSSMQFDNKERGFCFDSYM 123

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                     +SA ++VN A++ +L RI    GE ++  ++A  IV+ R++A F + + L
Sbjct: 124 LDMRMDREQHLSAKEIVNGASLNELERIFRDFGEIREYKKLARLIVEERKNAKFTSAKHL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLIVVSF 250
           S LI K     K+ +IHPAT++FQALRI VN+E+ EL + L++  E  LK G  + V++F
Sbjct: 184 SELIAK---HFKHPKIHPATQAFQALRIAVNDELGELERLLQTLGENPLKKGARVSVITF 240

Query: 251 HSLEDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K+ F       +              +  +S+ KK +   + ++  N RSRS
Sbjct: 241 HSLEDRITKQTFREWERDCICDCNIMRCICGGGHSKGKSLYKKPLCADESELRENPRSRS 300

Query: 309 AKLRAGM 315
           AKLR+  
Sbjct: 301 AKLRSFE 307


>gi|28373611|pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373612|pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373847|pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
 gi|28373848|pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
          Length = 301

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 174/311 (55%), Gaps = 27/311 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
              H+PV + +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   
Sbjct: 7   SQRHIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIA 66

Query: 75  QETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E ++++ ++ SLF+ ++ +   L   +  + VDG++ DLGVS+ Q+   +RGF+F++  
Sbjct: 67  EEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREE 126

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLD R       +A  V+N+   ++L RI+   GEEK+ +R      K  ++ P  TT D
Sbjct: 127 PLDXRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFAR--RIARKIVENRPLNTTLD 184

Query: 191 LSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L   +++ +     +  + H AT++FQA+RI+VN E+E L + L+ AE  L  GG ++V+
Sbjct: 185 LVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+ F +                     + +T+K V P++E++  N R+RS
Sbjct: 245 SFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENPRARS 287

Query: 309 AKLRAGMRTVE 319
            +LRA  R  E
Sbjct: 288 GRLRAAERIEE 298


>gi|325971088|ref|YP_004247279.1| ribosomal RNA small subunit methyltransferase H [Spirochaeta sp.
           Buddy]
 gi|324026326|gb|ADY13085.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta sp.
           Buddy]
          Length = 296

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 18/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           H  V+ ++V+  L    G    ++D T G GG++  F        VI LDRD        
Sbjct: 5   HYSVMAQEVLQYLVVPEGREATMVDCTCGEGGHTHLFLSTHPNLKVIGLDRDTTIQQKAI 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E M+++  +F      F+       +   D ++FDLG+SS   +   RGFSF+K   LDM
Sbjct: 65  ERMKEFGSRFEPKNIWFNDFFAQGEENVYDLILFDLGISSFHYEESHRGFSFRKDEVLDM 124

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R+  S  ISA DVVN    + L  ++   GEE+ + RIA +IV+RR+ A   T+++L+S+
Sbjct: 125 RLDESASISAFDVVNGYQEERLADVIFNFGEERYSRRIARSIVERRKLAKISTSEELASI 184

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I K V    +   IHPATR+FQA+RI VN E++ +   L+ A KALK+GG + V+SFHSL
Sbjct: 185 IYKAVPPNYRYGHIHPATRTFQAIRIEVNRELDRIEPALKGAVKALKSGGRIAVISFHSL 244

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK  F   +                   + +TKK ++PT ++   N  SRSAKLR 
Sbjct: 245 EDRQVKWLFKGMA------------EGDEPAIRILTKKPLIPTDQEREENAASRSAKLRI 292

Query: 314 GMR 316
             +
Sbjct: 293 IEK 295


>gi|302338060|ref|YP_003803266.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM
           11293]
 gi|301635245|gb|ADK80672.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM
           11293]
          Length = 320

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 116/320 (36%), Positives = 173/320 (54%), Gaps = 10/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKM--GSNVIALD 65
           M+      +  H  V+ E+    L+PA    +++D T G GG+S  F     G  ++ LD
Sbjct: 1   MTGTFMDIV--HRSVMAEEAFHYLSPALEKGLLVDCTLGEGGHSELFLSRLPGCRIVGLD 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDR 123
            D   +   ++ +  + E+  LF   F+      P  D+  D V+FDLG+S    +   R
Sbjct: 59  ADEKILEVARQRLAPFGERVRLFNTWFNVFFRDYPLGDERPDAVLFDLGISVFHYERSGR 118

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF++  PLDMR+      SA+D++N    K+L  ++   GEE+ + R A AIV RRQS
Sbjct: 119 GFSFREDEPLDMRLEAHLEQSAADIINTYPEKELADLIFRFGEERLSRRFASAIVARRQS 178

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT++L  +I        ++ RIHPATR+FQALRI VN E+  L   L  A   L+ 
Sbjct: 179 KPFTTTKELEEVIWTASPQSYRHGRIHPATRTFQALRIAVNGELARLESALGDAFARLRP 238

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG++ V+SFHSLEDR+VK FF  +    ++     I S+      + +TKK + PT+E+V
Sbjct: 239 GGMMGVISFHSLEDRIVKHFFLDKKKGCISSSGAPIDSDRGVTAAEILTKKPLRPTEEEV 298

Query: 301 AFNRRSRSAKLRAGMRTVER 320
             N  SRSAK R   + ++ 
Sbjct: 299 RVNAPSRSAKFRVVRKLIDE 318


>gi|187735156|ref|YP_001877268.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425208|gb|ACD04487.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 520

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VLL + + +L   PGK I+D T G GG++    + G+ V  +DRD  A       + 
Sbjct: 219 HITVLLHETVDMLKAGPGKFIVDCTLGGGGHTELLLEQGATVWGIDRDADARRAAMLRLA 278

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +F +    F  ++  +  +    VDG++ DLGVSS Q+D   RGFSF++ GPLDMR
Sbjct: 279 RFGSRFKVLAGNFQDVESILSQQGVSRVDGLLADLGVSSHQLDTASRGFSFREDGPLDMR 338

Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M      SA ++VN+A  +++  IL   GEE+ +  IA A+VK R  AP  TT  L+ ++
Sbjct: 339 MDTRAALSARNLVNEAPEEEIANILWQFGEERASRAIARAMVKARAQAPITTTAQLARIV 398

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  +   +  R HP TR+FQALRI VN E++ L   L S+ + L  GG + V++FHSLED
Sbjct: 399 ESVL--PRKGRQHPGTRTFQALRIAVNGELDALDALLDSSVRLLGQGGRMAVITFHSLED 456

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R VK+FF  RS   +       P       F+ +++K V   +E+++ N RSRSAKLR  
Sbjct: 457 RRVKQFFDLRSRPEIDRPEWPAPRPNPDYCFRPLSRKPVTAGEEELSTNPRSRSAKLRGV 516

Query: 315 MRT 317
            + 
Sbjct: 517 EKI 519


>gi|300933362|ref|ZP_07148618.1| S-adenosyl-methyltransferase MraW [Corynebacterium resistens DSM
           45100]
          Length = 348

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 108/335 (32%), Positives = 180/335 (53%), Gaps = 25/335 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALL------NPAPG-KVILDATFGAGGYSRSFCKMGSN-- 60
            +  + T G HVPV+ ++++ L+      + AP   VI+D T GAGG+S +F    S+  
Sbjct: 8   DATENATHG-HVPVMCDRMVELVGVGVTSDNAPSVPVIIDGTLGAGGHSEAFLSSFSDAI 66

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV-------------PDKGVDGV 107
           VI LDRDP A+    E +  + ++F  ++  F  + + +              + G+  +
Sbjct: 67  VIGLDRDPHALEEATERLAPFGDRFVPYRTRFDGITEAIEDLIALDRIPAEVRETGLSAL 126

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEE 166
            FDLGVSSMQ+D  +RGF+++   PLDMRM     ++A++++N  +  DL RIL   G+E
Sbjct: 127 FFDLGVSSMQLDQAERGFAYRVDAPLDMRMDPRLSLTAAEILNTYSHGDLARILKTYGDE 186

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEI 225
           + A +IA A+++ R+  PF T+  L  L+  T+   ++    HPA R+FQALRI VN E+
Sbjct: 187 RFAGKIASAVLREREKEPFTTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNAEL 246

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L  A      GG+ + +S+ SLED++VK  F+  +         +        F
Sbjct: 247 EALENVLPLAASWTHVGGVNVYMSYQSLEDKIVKSAFSDLTTSQTPAGLPMELPGTEPEF 306

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
           + IT++    T++++  N R+   ++RA  R  +R
Sbjct: 307 EMITRRAEKATEKEIEENSRAAPVRVRAARRVSDR 341


>gi|224050409|ref|XP_002191093.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Taeniopygia guttata]
          Length = 443

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 131/335 (39%), Positives = 183/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV+LE+V+  L+P PG+  LD TFGAGG++ +  +  S+  V ALDRDP A    Q+ 
Sbjct: 108 HIPVMLEEVVNCLSPQPGQRFLDMTFGAGGHTAALLERASDISVYALDRDPTAHRMAQQL 167

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y +Q       FSQ +  +         +DGV+ D G SSMQ+D  +RGFS QK GP
Sbjct: 168 AQAYPKQLQPLLGRFSQSEALLISSGVEPGSLDGVLLDAGCSSMQLDTPERGFSLQKDGP 227

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          A+DVVN  + + L  +L   GEE+ A RIA AIV+ R   P   T
Sbjct: 228 LDMRMDHDRCPAMATAADVVNALDQRALASVLSAYGEERHARRIAAAIVQARSIYPITRT 287

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           + L+S++      S            +H AT++FQ LRIFVN+E+ EL  GL++AEK L+
Sbjct: 288 RQLASIVAGAFPASALYARKDLLQRPVHVATKTFQGLRIFVNDELHELLIGLKTAEKFLR 347

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRHMI------------PSNAH 281
            GG L+ +SFHSLEDR++K+F            G    +R  +            P    
Sbjct: 348 PGGRLVALSFHSLEDRIIKRFLHGIDITEKYNLGSKQKIRQALKNASKGEDTQGSPCGKS 407

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + + SI KKV+ P  +D+  N R RSAKLRA ++
Sbjct: 408 NSKWISIQKKVLTPQAKDIQINPRGRSAKLRAAIK 442


>gi|283780728|ref|YP_003371483.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068]
 gi|283439181|gb|ADB17623.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068]
          Length = 318

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/338 (32%), Positives = 169/338 (50%), Gaps = 41/338 (12%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           M   S  T  ++   T   HV V+  ++I  L P+ G ++LD T GAGG++R   +    
Sbjct: 1   MSDSSSPTDQASPATTQPIHVSVMPREIIEWLRPSAGSILLDGTLGAGGHTRLLAEAIDA 60

Query: 59  ---------------SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-- 101
                            V++ DRD  A++  +  ++       L  A F +L   + +  
Sbjct: 61  AENLAKSTGNTQFSPGYVLSSDRDEAALARAEVHLKGLP--VKLVHANFCELPSVLEELG 118

Query: 102 -KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRI 159
             GV G V DLG+SS Q+    RGFSF  +G LD+R    +G  A  ++ +   +++  I
Sbjct: 119 VTGVQGCVLDLGLSSDQLADDARGFSFDATGELDLRFDTSTGDPAWKLLEKLREEEIANI 178

Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219
           +   GEE+ + RIA  I ++R   P +T  +L+ ++++ V    + +I PATR+FQALRI
Sbjct: 179 IYQFGEERLSRRIARKICEQRIIKPIRTADELARIVRRCVPRG-DGKIDPATRTFQALRI 237

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
            VN E++ L + L    + L  GG L ++SFHSLEDRLVK+ F S               
Sbjct: 238 AVNGELDALKKALEKIPECLAPGGRLAIISFHSLEDRLVKEAFRS--------------- 282

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                  ++TKK +    +++A N RSRSAKLR   R 
Sbjct: 283 --DLRLNNLTKKPLTALDDELASNPRSRSAKLRVAERV 318


>gi|297268188|ref|XP_001088477.2| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 1 [Macaca
           mulatta]
          Length = 407

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 129/340 (37%), Positives = 186/340 (54%), Gaps = 39/340 (11%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAVLGQFSQAEALLTKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLDMRM         +A+DVVN  +   L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQPALASILRTYGEEKHARKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           P   TQ L+S+         +Y  K       H AT++FQALRIFVNNE+ EL  GL++A
Sbjct: 247 PITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTA 306

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281
           +K L+ GG L+ +SFHSLEDR++K+F                +  K   +     +    
Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSGHENTEEV 366

Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 367 SMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAVK 406


>gi|237802695|ref|YP_002887889.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273929|emb|CAX10721.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 300

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ           +  G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L S+ + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSSFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     +               + + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|15604993|ref|NP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D/UW-3/CX]
 gi|76788994|ref|YP_328080.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis A/HAR-13]
 gi|237804617|ref|YP_002888771.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311073|ref|ZP_05353643.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276]
 gi|255317374|ref|ZP_05358620.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276s]
 gi|20138894|sp|O84274|RSMH_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909193|sp|Q3KM90|RSMH_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3328685|gb|AAC67865.1| PBP2B Family methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167524|gb|AAX50532.1| MraW [Chlamydia trachomatis A/HAR-13]
 gi|231272917|emb|CAX09828.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|296435788|gb|ADH17962.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9768]
 gi|296436713|gb|ADH18883.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11222]
 gi|296437648|gb|ADH19809.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11074]
 gi|297140147|gb|ADH96905.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9301]
 gi|297748402|gb|ADI50948.1| MraW [Chlamydia trachomatis D-EC]
 gi|297749282|gb|ADI51960.1| MraW [Chlamydia trachomatis D-LC]
          Length = 300

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ           +  G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     +               + + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|76779305|gb|AAI06187.1| Methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 406

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/334 (39%), Positives = 183/334 (54%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +  V ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +         +DG++ DLG  SMQ+D  +RGFS +K GP
Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCPSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S+         VY  K       H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH-----P 282
            GG L+ +SFHSLEDR+VK+F                +  +   +     +        P
Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405


>gi|213647633|ref|ZP_03377686.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 293

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/288 (37%), Positives = 164/288 (56%), Gaps = 15/288 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           +SFHSLEDR+VK+F   +S        +  + A     + +  + +  
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQ---LKKLGGRELRA 283


>gi|169629085|ref|YP_001702734.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus ATCC
           19977]
 gi|263456523|sp|B1MP29|RSMH_MYCA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169241052|emb|CAM62080.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus]
          Length = 331

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/319 (36%), Positives = 174/319 (54%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H+PV+L++   LL PA         G V++DAT GAGG++  F  M     VI LDRD  
Sbjct: 10  HIPVMLDRCYELLAPALTADSTDGSGAVLVDATLGAGGHTEHFLTMLPGLTVIGLDRDTN 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  +  +F      +  L D      Y     VDGV+FDLGVSSMQ+D  +R
Sbjct: 70  ALDIARSRLAPFGTRFVGVHTRYDGLADALDGLGYRTTSSVDGVLFDLGVSSMQLDQAER 129

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+     +A+D++N  +  +L+R+L   GEE+ A RIA  IV+RR +
Sbjct: 130 GFAYSVDAPLDMRMNAQDELTAADILNTYSAVELSRVLSRFGEERFARRIADEIVRRRAN 189

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF  +  L  L+  T+   ++    HPA R+FQALRI VN E+E LA  + +A  AL+ 
Sbjct: 190 EPFTRSGQLVELLYATIPAATRRTGGHPAKRTFQALRIAVNAELESLATAIPAAMAALRP 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+++ SLED++VK  FA+ +     +   +        F +IT+       E++ 
Sbjct: 250 GGRVAVMAYQSLEDKIVKAEFAAATASRSPIDLPVELPGDAPEFTAITRGAERANDEEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS   +LRA  R  +R
Sbjct: 310 VNPRSAPVRLRAVERVADR 328


>gi|332283258|ref|YP_004415169.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7]
 gi|330427211|gb|AEC18545.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7]
          Length = 357

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/344 (34%), Positives = 178/344 (51%), Gaps = 32/344 (9%)

Query: 20  HVPVLLEKVIALLNP------------------APGKVILDATFGAGGYSRSFCKMGS-- 59
           H PVLLE  +  L                        V +D TFG GG+SR      S  
Sbjct: 5   HRPVLLEPTVNALVDPGFGVKGKRSQMRDDSQALADGVFVDGTFGRGGHSRLLLSRLSPD 64

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSS 115
             ++  D+DP A++  Q  +R   E+  +  + F+ +      +    V+GV+ DLG+SS
Sbjct: 65  AKLVVFDKDPEAIAAAQA-LRQEDERVVVVHSGFANMPAQLQALGITEVNGVMLDLGISS 123

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            QID   RGFSF + GPLDMRM  S G++A+  + Q ++ +L  ++   GEE+ A +IA 
Sbjct: 124 PQIDDASRGFSFMREGPLDMRMDTSSGLTAAQWLAQVDIDELKEVIAKYGEERFAFQIAK 183

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           A++ RR+S P +TT DL+ L+   V   +    HPATR+FQA+RI++N E++ELA  L +
Sbjct: 184 AVIARRESRPLRTTLDLAELVASVVRT-REKGQHPATRTFQAIRIYLNQELQELALALAA 242

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKV 292
             + L  GG L V+SFHSLEDR+VK+  A+ S        +     +    +  S+ +  
Sbjct: 243 VLRVLAPGGRLAVISFHSLEDRMVKQCIAAASRPAAVHARLPILEKDMPQPILNSLGR-- 300

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           ++PT+++   N R+RSA LR   RT    +  D          L
Sbjct: 301 ILPTEQESKENVRARSAVLRVAERTSTP-LPPDQGASFITAMNL 343


>gi|119953105|ref|YP_945314.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135]
 gi|263447569|sp|A1QZA2|RSMH_BORT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119861876|gb|AAX17644.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135]
          Length = 297

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 168/308 (54%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H+PVLLE++I LL   N + G V +D T G GG+S +  K     NVI +DRD   ++  
Sbjct: 6   HIPVLLEEIINLLEASNISDGFVFVDCTLGEGGHSSAVLKKYQNINVIGIDRDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++K + S F   F     +Y     ++ ++ DLG+S        RGFSF +   L
Sbjct: 66  KESLIEFKGRVSYFNTWFDDFFSEYPLSSKINFILADLGISMFHYKMSGRGFSFFEDERL 125

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+     G+SA D++N  + K L  ++  L  E+ + RI  +I++ R+    +T ++L
Sbjct: 126 DMRLYPGAGGLSAYDIINTFDKKRLENLIYELSGERYSRRIVKSILEYRKIKKIETPREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K     K  +I+PAT++FQALRI+VN+E+  L + L    ++L   G+L +V+FH
Sbjct: 186 QDIVSKAYPRIK-LKINPATKTFQALRIYVNDELFRLKRSLPLWVESLSNNGVLAIVTFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   S                     +TKK ++P  E+  FN  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLSKDQYC---------------ILTKKPIMPRCEEKRFNSASRSAKL 289

Query: 312 RAGMRTVE 319
           R   +  E
Sbjct: 290 RVIKKLYE 297


>gi|255348632|ref|ZP_05380639.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70]
 gi|255503172|ref|ZP_05381562.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70s]
 gi|255506850|ref|ZP_05382489.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D(s)2923]
 gi|289525311|emb|CBJ14787.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis Sweden2]
 gi|296434861|gb|ADH17039.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/150]
 gi|296438581|gb|ADH20734.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/11023]
          Length = 300

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ           +  G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEESLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     +               + + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|308807246|ref|XP_003080934.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1|
           probable S-ade (ISS) [Ostreococcus tauri]
 gi|116059395|emb|CAL55102.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1|
           probable S-ade (ISS) [Ostreococcus tauri]
          Length = 370

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/325 (33%), Positives = 168/325 (51%), Gaps = 27/325 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
              H  V+++++++       +  +D T GAGG++++  +      + I  D D  A + 
Sbjct: 47  TAPHYSVMMDEILSAFRDVELRAHVDGTLGAGGHAQAMIRTHPEMEHFIGFDVDASAHAI 106

Query: 74  GQETMRDYKEQ----------FSLFQATFSQLQDYVPDKGVDG------VVFDLGVSSMQ 117
            +  +   +E            SL +A F Q+   +   G         VV DLGVSSM 
Sbjct: 107 ARPRLERAREDARGGEAGALKVSLVEANFRQMAQALEAMGGIHRAGIDGVVLDLGVSSMH 166

Query: 118 IDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFSF   GPLDMRM   +  SA ++VN    +++ RIL   GEE+    +A  I
Sbjct: 167 LDRAERGFSFMNDGPLDMRMGPSAKTSAEEIVNAWPEEEIGRILRDYGEERHWRLLAKRI 226

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +RR +    TT++L   +       K   IHPATR+FQ +RI VN+E+  +   + +A 
Sbjct: 227 CERRAAKAITTTRELVDALGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAI 284

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV-----MAVRHMIPSNAHPAVFQSITKK 291
           +AL+ GG L ++SFHSLED +VKK F   +G+         R+M      P V + IT+K
Sbjct: 285 EALRPGGRLAIISFHSLEDSIVKKKFRFYAGQAEPLGETFNRYMDQPEKPPKVVKLITRK 344

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
            +VP+ ++V  N RSRSAKLR   +
Sbjct: 345 PLVPSVDEVDENVRSRSAKLRVCEK 369


>gi|296284506|ref|ZP_06862504.1| S-adenosyl-methyltransferase MraW [Citromicrobium bathyomarinum
           JL354]
          Length = 303

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 179/302 (59%), Gaps = 10/302 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQFS 86
           +A L P   ++I+D TFGAGGY+R+    G+ V A DRDP A+   Q    + +   +  
Sbjct: 2   VAALRPVQDELIVDGTFGAGGYTRALLDAGATVHAFDRDPTALENAQGWPELAETPPRLV 61

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           L +  F+ +   + ++    VDG+V D+GVSSMQ+D  DRGFSF   GPLDMRM     S
Sbjct: 62  LHRRAFADMAAALAEQGIARVDGIVLDIGVSSMQLDQADRGFSFAGDGPLDMRMDPDLPS 121

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
           A+D +N A+  ++  ++   GEE+Q+ RIA AIV  R   P +TT  L+ L++K      
Sbjct: 122 AADFLNSADEAEIADVIYQYGEERQSRRIARAIVAAR---PLETTGQLARLVRKATGHKP 178

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
           +++  PATR+FQA+RI VN E+E+L   L +AE+ L  GG L+VVSFHSLEDR+VK+F  
Sbjct: 179 HDKKDPATRTFQAIRIHVNGELEQLRGALAAAERLLAPGGRLVVVSFHSLEDRIVKRFMR 238

Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
             SG+     RH+  +   PA F    +  V   + ++A N R+RSA LRA  RT     
Sbjct: 239 DASGQAGGGSRHLPLAETPPATFDKPLR-AVRAGEAELARNPRARSAILRAATRTDAAPR 297

Query: 323 ED 324
           ++
Sbjct: 298 KE 299


>gi|33593961|ref|NP_881605.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis Tohama I]
 gi|33598269|ref|NP_885912.1| S-adenosyl-methyltransferase MraW [Bordetella parapertussis 12822]
 gi|33603180|ref|NP_890740.1| S-adenosyl-methyltransferase MraW [Bordetella bronchiseptica RB50]
 gi|42558972|sp|Q7VUP6|RSMH_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42558973|sp|Q7W4A7|RSMH_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42558974|sp|Q7WFR5|RSMH_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33564035|emb|CAE43301.1| S-adenosyl-methyltransferase [Bordetella pertussis Tohama I]
 gi|33566827|emb|CAE39042.1| S-adenosyl-methyltransferase [Bordetella parapertussis]
 gi|33568811|emb|CAE34569.1| S-adenosyl-methyltransferase [Bordetella bronchiseptica RB50]
 gi|332383379|gb|AEE68226.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis CS]
          Length = 364

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 174/336 (51%), Gaps = 35/336 (10%)

Query: 16  TIGDHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRS 53
              +H PVLLE  +  L                P P         V +D TFG GG+SR+
Sbjct: 1   MEFEHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRA 60

Query: 54  FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107
                     ++  D+DP A++  +E +     +  +    F+ + + +  +    VDGV
Sbjct: 61  LLARLGAQARLVVFDKDPQAIAVARE-LAAGDGRVEVVHGGFATMAEELTARGIEQVDGV 119

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS QID  +RGFSF + GPLDMRM    G + +D + QA+V ++  ++   GEE
Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A ++A AI   R + P  TT  L+  +   V   +    HPATR+FQALRI++N E+E
Sbjct: 180 RFAFQVAKAIAACRATRPLHTTLQLAECVAGAVRT-REKGQHPATRTFQALRIYINRELE 238

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284
           ELA+ L SA   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     +
Sbjct: 239 ELARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESELPQPL 298

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            +S+ K  VV    +VA N R+RSA LR   RT E 
Sbjct: 299 VRSLGK--VVADDVEVAGNARARSAILRVAERTGEP 332


>gi|295394731|ref|ZP_06804946.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972327|gb|EFG48187.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 362

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 115/320 (35%), Positives = 170/320 (53%), Gaps = 20/320 (6%)

Query: 16  TIGDHVPVLLEKVIALLN----------PAPGKVILDATFGAGGYSRSFCKMGS--NVIA 63
               HVPVLL+  + LL            AP  V++D T G GG+S    ++    +VI 
Sbjct: 40  MTYPHVPVLLDMCVELLGHGIEEARARGIAP--VVIDFTLGMGGHSEGILRVFDDVHVIG 97

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDC 120
           +DRDP A+      +  +  +F     +   + +      +  + GV+FDLGVSS+Q+D 
Sbjct: 98  IDRDPAAIEIATSRLAPFGSRFEAVCTSDDNISEVLEQRGNPPISGVLFDLGVSSLQLDD 157

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFS+ +  PLDMRM+   GISA+DV+   +  DLTRI+   GEE+ A RIA AIV  
Sbjct: 158 DARGFSYSRDTPLDMRMNPTEGISAADVLATYSENDLTRIISTYGEERYARRIARAIVAD 217

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R+  P+ +TQ L+ LI + V   KN R   HPA R+FQALRI VN+E+  + + L +A  
Sbjct: 218 REHTPWTSTQQLADLIGRIVPDPKNQRKRSHPAKRTFQALRIEVNDELGNITRSLPAALS 277

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  GG+ +V S+ S ED +VK+ F   +         +  +      + I +      Q
Sbjct: 278 ALHLGGVAVVESYQSGEDIIVKRIFRQGTTVQAPPDLPVVPDHLKPWLEEIVRGAYKAPQ 337

Query: 298 EDVAFNRRSRSAKLRAGMRT 317
           E++  N R+ S +LRA  +T
Sbjct: 338 EEIDHNPRAASVRLRAVRKT 357


>gi|289522914|ref|ZP_06439768.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503938|gb|EFD25102.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 300

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 180/313 (57%), Gaps = 25/313 (7%)

Query: 16  TIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
               HVPVL  ++I +L+ +   K+++DAT G GG++ +         ++ LD+D  A+ 
Sbjct: 2   ETIRHVPVLTNEIINILSLSDDLKLVVDATVGLGGHAYALLSTFPDIKLLGLDQDETALE 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              E ++ + E+  L ++ F  + D V +      VD ++FDLGVSS+QID  +RGFSF 
Sbjct: 62  IAYERLKPFGERVLLVKSNFRFIDDVVKNHFRSVAVDAILFDLGVSSLQIDDEERGFSFN 121

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQ 186
           K GP+DMRM     ++A D++N   +KDL+ I    GEE+ + +IA AIV+ R+      
Sbjct: 122 KPGPIDMRMDREAKVTAFDIINNYCIKDLSDIFYKYGEERYSRQIAKAIVRYREQKGLIA 181

Query: 187 TTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T +L  +I++ +     +    HPA R FQALRI VN+E+  L  GL+++   L++GG 
Sbjct: 182 STAELVEIIRRALPAKIQRQMGKHPARRVFQALRIVVNDELGALESGLKNSLGCLRSGGH 241

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           LIV+S+HSLEDR+VK  F     + +               +  +KK ++P +E++  N 
Sbjct: 242 LIVISYHSLEDRIVKHSFKDWEKEGI--------------GKIFSKKPILPKREEIEGNP 287

Query: 305 RSRSAKLRAGMRT 317
           RSRSAKLR  +++
Sbjct: 288 RSRSAKLRVLIKS 300


>gi|303232694|ref|ZP_07319379.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4]
 gi|302481180|gb|EFL44255.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4]
          Length = 316

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 28/317 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM- 78
           H+PV+L++ +A LNP PG+++ D T GA G++ +  +           P  +S G +   
Sbjct: 7   HIPVMLQETLAYLNPKPGEIVCDCTLGAAGHTVALAERIC--------PDGLSIGIDQDD 58

Query: 79  ------------RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123
                            Q+   Q  FSQ+ + +       VD V+FDLGVSS Q+D   R
Sbjct: 59  AAIAAATQHITRACPTAQYRFLQGNFSQIDELLLKAEVVGVDCVLFDLGVSSPQLDIPSR 118

Query: 124 GFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           GFS+ ++ PLDMRM     +   ++V+N  N  DLTRIL + G+EK A +IA  IVK RQ
Sbjct: 119 GFSYHENAPLDMRMDPRNNTLNAAEVINTYNEADLTRILRVFGDEKFAPQIARRIVKERQ 178

Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +   +TT +L  +I+ ++   ++ +  HPA ++FQA+RI VN+E++ L  GL  A   L 
Sbjct: 179 TKAIETTFELVDIIKASIPAAARRHAKHPARKTFQAIRIEVNHELDVLQVGLERAIAWLN 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299
            GG + V+S+HSLEDRLVK  FA  +   +    +         +   ITKK +  + E+
Sbjct: 239 TGGRMCVISYHSLEDRLVKHVFAQYARGCVCPVDLPVCVCHKKPIIDVITKKPLYASDEE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           VA N R+RSA +R   +
Sbjct: 299 VARNPRARSACMRVCKK 315


>gi|240168225|ref|ZP_04746884.1| S-adenosyl-methyltransferase MraW [Mycobacterium kansasii ATCC
           12478]
          Length = 330

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/320 (34%), Positives = 177/320 (55%), Gaps = 18/320 (5%)

Query: 22  PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           PVL  + + LL PA     P     +++DAT GAGG++  F +      +I LDRDP A+
Sbjct: 2   PVLARRCVELLAPALTRRHPDGFGAILVDATLGAGGHAERFLRELPGLRLIGLDRDPSAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD------KGVDGVVFDLGVSSMQIDCGDRGF 125
              ++ +  + E+ +L +  +  +   + +      + VDGV+FDLGVSSMQ+D  +RGF
Sbjct: 62  DIARDRLAPFAERITLIRTRYDGVASVLAELGYGAVESVDGVLFDLGVSSMQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ K  PLDMRM     ++A+D+VN  +   L  IL   GEE+ A RIA  IV++R   P
Sbjct: 122 AYAKDAPLDMRMDPDIPLTAADIVNSYDEAALADILRRYGEERFARRIAERIVRQRAHTP 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F +T +L +++ + +  + +    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 182 FTSTSELVAVVYQAIPAAARRTGGHPAKRTFQALRIAVNDELDTLRGAVPAAMAALRVGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK+ FA        +   +    H   F+S+T         ++  N
Sbjct: 242 RIVVMAYQSLEDRIVKRVFADAVASKTPIGLPVELPGHGPRFRSLTHGAERADAAEMERN 301

Query: 304 RRSRSAKLRAGMRTVERSIE 323
            RS + +LRA  R    +  
Sbjct: 302 PRSAAVRLRALQRIDHEAEP 321


>gi|187607601|ref|NP_001120214.1| methyltransferase like 15 [Xenopus (Silurana) tropicalis]
 gi|166796910|gb|AAI59379.1| LOC100145263 protein [Xenopus (Silurana) tropicalis]
          Length = 375

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/330 (39%), Positives = 173/330 (52%), Gaps = 33/330 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HVPV++ +V   L P  G+ ILD TFGAGG++ S  K  S   V+ALDRDP A +  Q+ 
Sbjct: 45  HVPVMVNEVTECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFAIAQQL 104

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                         FS+ +D +         +DGV+ D G SSMQ D  DRGFS  + GP
Sbjct: 105 AHSCGHNIQPLLGRFSESKDLLTSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSRDGP 164

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEE+ A +IA AIV+ R   P   T
Sbjct: 165 LDMRMDGDRYPDMPTAADVVNALDQQALASILKTYGEERHAKKIASAIVQARSIYPITRT 224

Query: 189 QDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           Q L+S++      ++        H AT++FQALRIFVNNE+ EL  GL +AE  L+ GG 
Sbjct: 225 QQLASIVTGASIQARTDLLQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFLRPGGR 284

Query: 245 LIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNA-----HPAVFQ 286
           L+V+SFHSLEDR+VK+F                +  +       +             + 
Sbjct: 285 LVVISFHSLEDRIVKRFLHGIDMADKPNLAARHKIRQGQRNSKEMEDEEFLMSHSNPAWT 344

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 345 VIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374


>gi|296217807|ref|XP_002755199.1| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1 [Callithrix jacchus]
          Length = 406

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 131/352 (37%), Positives = 190/352 (53%), Gaps = 44/352 (12%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60
           + ++ +TM       +  H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+ 
Sbjct: 61  QDRNFETM-------VKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDI 113

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVS 114
            + ALDRDP A +  +     Y +Q       FSQ     ++  V     DGV+ DLG S
Sbjct: 114 VLYALDRDPTAYALAEHLSELYPKQIRAMLGRFSQAETLLMKAEVQPGTFDGVLMDLGCS 173

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           SMQ+D  +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A 
Sbjct: 174 SMQLDTSERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAK 233

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVN 222
           +IA AIV+ R   P   TQ L+S+         +Y  K       H AT++FQALRIFVN
Sbjct: 234 KIASAIVQARSIYPITRTQQLASIIAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVN 293

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF------------------FAS 264
           NE+ EL  GL++A+K L+ GG L+ +SFHSLEDR+VK+F                    +
Sbjct: 294 NELNELHTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKA 353

Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                      +     P +++ I KKV+ P   DV  N R RSAKLRA ++
Sbjct: 354 SRLDSDHENVEVSMRRAPLMWELIHKKVLSPQSRDVQDNPRGRSAKLRAAIK 405


>gi|227488521|ref|ZP_03918837.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091415|gb|EEI26727.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 354

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/325 (30%), Positives = 162/325 (49%), Gaps = 20/325 (6%)

Query: 15  HTIGDHVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
                HVPVL ++++ LL           +++D T GAGG++         + VI +DRD
Sbjct: 26  QENHGHVPVLRDRMVELLRRGIAVDGATGIVVDGTLGAGGHTEHLLATDPNARVIGVDRD 85

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSM 116
             A+      +  + ++F      F +  +                     +FDLGVSSM
Sbjct: 86  AQALKDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSM 145

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF+++   PLDMRM    GI+A+DV+N  +  DL R+L   GEEK A +IA A
Sbjct: 146 QLDQEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASA 205

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +++ R+  PF  +  L  L+  T+    + +  HPA R+FQALR+ VN E+  L Q +  
Sbjct: 206 VIREREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPV 265

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
              AL  GG+++ +S+ SLED++VKK  A  +         +        F  +T+    
Sbjct: 266 TADALHVGGVMVFMSYQSLEDKIVKKALAKLTTSTNPPGLPVDLPGTEPHFALVTRGSEK 325

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
            +++++  N R+ S ++RA  R + 
Sbjct: 326 ASKKEIDQNPRAASVRVRAAQRVLN 350


>gi|220912331|ref|YP_002487640.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus
           A6]
 gi|263447791|sp|B8HGW2|RSMH_ARTCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219859209|gb|ACL39551.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus
           A6]
          Length = 330

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 15/311 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS- 59
           M+     T   HVPVL ++ I LL P        GK  +++DAT G GG+S +  +    
Sbjct: 1   MNEQPKPTSERHVPVLRDRCINLLAPGFDAARQQGKAPIVIDATLGMGGHSEAMLQRFPD 60

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115
            ++I +DRD  A++   E +  +  +  L  A + ++ + + D     + G++ DLGVSS
Sbjct: 61  LHLIGIDRDEEALALAGERLAPFSARTDLVHAVYDEIPEVLADLGVTEISGILMDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D  +RGF++    PLDMRM    G +A+DVVN  N ++L RI+   GEEK A RIA+
Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYNEEELVRIIRKWGEEKFAGRIAN 180

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV  R   PF TT +L   I+  V   +  +  HPA R+FQALRI VN E++ L + + 
Sbjct: 181 RIVAARGEKPFTTTGELVEQIRSVVPAGAAKSGGHPAKRTFQALRIEVNEELDVLERAVP 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A  AL  GG ++V+S+HSLED++VK     RS     +   +    H    + +TK   
Sbjct: 241 AAVDALAMGGRIVVMSYHSLEDKIVKSVLQGRSKSSAPLGFPVELEEHKPELKILTKGTE 300

Query: 294 VPTQEDVAFNR 304
           VPT  ++A N 
Sbjct: 301 VPTAVEIAENP 311


>gi|166154483|ref|YP_001654601.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 434/Bu]
 gi|166155358|ref|YP_001653613.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335743|ref|ZP_07223987.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2tet1]
 gi|263446017|sp|B0B7I8|RSMH_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446024|sp|B0BBQ3|RSMH_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165930471|emb|CAP03964.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis 434/Bu]
 gi|165931346|emb|CAP06918.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRGRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ           +  G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     +               + + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase CG14683-like [Acyrthosiphon pisum]
          Length = 351

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 122/332 (36%), Positives = 173/332 (52%), Gaps = 28/332 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           H    H PVLLE+ I+ L+P  G  I+D TFGAGG++    +      V  LDRDP A +
Sbjct: 20  HNSRPHKPVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTTVVYCLDRDPTACA 79

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             ++    Y  +    +  FS L              DG++FD G SSMQ D   RGFS 
Sbjct: 80  MAKQLSERYPNRVIPLKGKFSDLPVLLKNLGCKMNSFDGILFDFGASSMQFDTASRGFSI 139

Query: 128 QKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
            K+GPLDMRM     +   +DV+ +A+  DL +I  + GEEKQ+ +IA+  I  R    P
Sbjct: 140 SKNGPLDMRMDPEEQTITAADVLAKADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFKP 199

Query: 185 FQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT+D   L+Q        + +     HPAT+ FQALRIFVNNE+ E+   +  A   L
Sbjct: 200 LKTTRDFCELVQNVCDNEMRSDMLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHYL 259

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQ--------- 286
           K GG+++ V+FHSLED +VK+             + ++++ P  A+   F          
Sbjct: 260 KMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCWH 319

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            I K V+ P+ E+V  N RSRSA+LRA +R  
Sbjct: 320 QIHKHVITPSVEEVESNPRSRSARLRAAVRIK 351


>gi|222824174|ref|YP_002575748.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100]
 gi|263447001|sp|B9KD58|RSMH_CAMLR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222539396|gb|ACM64497.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100]
          Length = 305

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               H+PVLL++V+   +       LD T G GG+S++  +      +IA D+D  A++ 
Sbjct: 1   MQSPHIPVLLQEVLDAFDDFDSGDFLDCTLGYGGHSKALLQAHEKLRLIACDKDLEALNF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +E ++ ++++ S     F  +   +P + + G++ D+GVSS+Q+D  DRGFS       
Sbjct: 61  SKEFLKKFQDRISFNHIGFKDILTQIPTQNLRGILADIGVSSLQLDKNDRGFSLNSDFLD 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEE-KQASRIAHAIVKRRQSAPFQTTQDLS 192
                 + +SA +VVN  + + L +I    G+    AS +   I+  R      + ++LS
Sbjct: 121 MRMDQNNLLSAKEVVNSYSKEALEQIFKDYGDLAPVASMLTQKIINARSQKEITSAKELS 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I       +N  +  A   FQALRI VNNE+ EL   L + EKA      L ++SFHS
Sbjct: 181 QIIGNAKLKGRN--VSLALLVFQALRIEVNNELGELKSLLENIEKAKLKDCKLAIISFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F       +     I        ++ + ++KK +  ++E++++N RS  AK
Sbjct: 239 LEDRIVKNTFKRWEKDCICDERAIKCECGKGHSLGKILSKKAISASKEEISYNSRSSCAK 298

Query: 311 LRAG 314
           +R  
Sbjct: 299 MRIF 302


>gi|308380285|ref|ZP_07669154.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis
           SUMu011]
 gi|308361967|gb|EFP50818.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis
           SUMu011]
          Length = 425

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64
            T   HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I L
Sbjct: 89  PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 148

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   + + G       DG++FDLGVSSMQ+
Sbjct: 149 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 208

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++    PLDMRM  +   +A+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 209 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 268

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +    +    HPA R+FQALRI VN+E+E L   + +A 
Sbjct: 269 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 328

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL  GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +
Sbjct: 329 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 388

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321
             ++  N RS   +LRA  R   R+
Sbjct: 389 VAEIERNPRSTPVRLRALQRVEHRA 413


>gi|308232054|ref|ZP_07663988.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis
           SUMu001]
 gi|308370931|ref|ZP_07667052.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372156|ref|ZP_07667311.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis
           SUMu004]
 gi|308215154|gb|EFO74553.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis
           SUMu001]
 gi|308330345|gb|EFP19196.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334178|gb|EFP23029.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis
           SUMu004]
          Length = 405

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64
            T   HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I L
Sbjct: 69  PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 128

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   + + G       DG++FDLGVSSMQ+
Sbjct: 129 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 188

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++    PLDMRM  +   +A+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 189 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 248

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +    +    HPA R+FQALRI VN+E+E L   + +A 
Sbjct: 249 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 308

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL  GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +
Sbjct: 309 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 368

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321
             ++  N RS   +LRA  R   R+
Sbjct: 369 VAEIERNPRSTPVRLRALQRVEHRA 393


>gi|15841657|ref|NP_336694.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CDC1551]
 gi|161352465|ref|NP_216681.2| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Rv]
 gi|161511532|ref|NP_855838.2| S-adenosyl-methyltransferase MraW [Mycobacterium bovis AF2122/97]
 gi|215403555|ref|ZP_03415736.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|215431098|ref|ZP_03429017.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|218753888|ref|ZP_03532684.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis GM
           1503]
 gi|219558145|ref|ZP_03537221.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T17]
 gi|254551204|ref|ZP_05141651.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187163|ref|ZP_05764637.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201284|ref|ZP_05768775.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T46]
 gi|294993552|ref|ZP_06799243.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 210]
 gi|297634755|ref|ZP_06952535.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN
           4207]
 gi|307084822|ref|ZP_07493935.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           SUMu012]
 gi|308369641|ref|ZP_07666771.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis
           SUMu002]
 gi|313659080|ref|ZP_07815960.1| 16S rRNA m(4)C1402 methyltranserfase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037824|sp|P65430|RSMH_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041487|sp|P65429|RSMH_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831560|sp|A5U4J2|RSMH_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460389|sp|A1KKK8|RSMH_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460410|sp|C1AQ81|RSMH_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13881910|gb|AAK46508.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|308326909|gb|EFP15760.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis
           SUMu002]
 gi|308365608|gb|EFP54459.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           SUMu012]
          Length = 344

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64
            T   HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I L
Sbjct: 8   PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 67

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   + + G       DG++FDLGVSSMQ+
Sbjct: 68  DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 127

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++    PLDMRM  +   +A+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 128 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 187

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +    +    HPA R+FQALRI VN+E+E L   + +A 
Sbjct: 188 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 247

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL  GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +
Sbjct: 248 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 307

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321
             ++  N RS   +LRA  R   R+
Sbjct: 308 VAEIERNPRSTPVRLRALQRVEHRA 332


>gi|121638047|ref|YP_978271.1| S-adenosyl-methyltransferase MraW [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148661981|ref|YP_001283504.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Ra]
 gi|148823374|ref|YP_001288128.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis F11]
 gi|224990541|ref|YP_002645228.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798770|ref|YP_003031771.1| methylase MraW [Mycobacterium tuberculosis KZN 1435]
 gi|254364966|ref|ZP_04981012.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260205463|ref|ZP_05772954.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289443672|ref|ZP_06433416.1| MraW methylase MraW [Mycobacterium tuberculosis T46]
 gi|289447793|ref|ZP_06437537.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|289554048|ref|ZP_06443258.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570281|ref|ZP_06450508.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574851|ref|ZP_06455078.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289745439|ref|ZP_06504817.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|289750761|ref|ZP_06510139.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754275|ref|ZP_06513653.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|289758287|ref|ZP_06517665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
 gi|289762326|ref|ZP_06521704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297731746|ref|ZP_06960864.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN
           R506]
 gi|298525659|ref|ZP_07013068.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|306793634|ref|ZP_07431936.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis
           SUMu005]
 gi|308375796|ref|ZP_07668118.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376929|ref|ZP_07668385.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377928|ref|ZP_07668626.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379135|ref|ZP_07668903.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis
           SUMu010]
 gi|2104313|emb|CAB08662.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31618937|emb|CAD97042.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493695|emb|CAL72170.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150480|gb|EBA42525.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506133|gb|ABQ73942.1| S-adenosyl-methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148721901|gb|ABR06526.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773654|dbj|BAH26460.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320273|gb|ACT24876.1| methylase MraW [Mycobacterium tuberculosis KZN 1435]
 gi|289416591|gb|EFD13831.1| MraW methylase MraW [Mycobacterium tuberculosis T46]
 gi|289420751|gb|EFD17952.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438680|gb|EFD21173.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289539282|gb|EFD43860.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289544035|gb|EFD47683.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685967|gb|EFD53455.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|289691348|gb|EFD58777.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694862|gb|EFD62291.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|289709832|gb|EFD73848.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713851|gb|EFD77863.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
 gi|298495453|gb|EFI30747.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|308337978|gb|EFP26829.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis
           SUMu005]
 gi|308345155|gb|EFP34006.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349457|gb|EFP38308.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354088|gb|EFP42939.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358031|gb|EFP46882.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis
           SUMu010]
 gi|326903782|gb|EGE50715.1| hypothetical protein TBPG_01665 [Mycobacterium tuberculosis W-148]
 gi|328458533|gb|AEB03956.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 396

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64
            T   HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I L
Sbjct: 60  PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 119

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   + + G       DG++FDLGVSSMQ+
Sbjct: 120 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 179

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++    PLDMRM  +   +A+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 180 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 239

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +    +    HPA R+FQALRI VN+E+E L   + +A 
Sbjct: 240 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 299

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL  GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +
Sbjct: 300 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 359

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321
             ++  N RS   +LRA  R   R+
Sbjct: 360 VAEIERNPRSTPVRLRALQRVEHRA 384


>gi|289826154|ref|ZP_06545266.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 279

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/274 (39%), Positives = 160/274 (58%), Gaps = 12/274 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           +SFHSLEDR+VK+F   +S        +  + A 
Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQ 272


>gi|183221148|ref|YP_001839144.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911239|ref|YP_001962794.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|263456288|sp|B0S989|RSMH_LEPBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456310|sp|B0SRS3|RSMH_LEPBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167775915|gb|ABZ94216.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779570|gb|ABZ97868.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 314

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 168/317 (52%), Gaps = 31/317 (9%)

Query: 18  GDHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
             H+PVL  +VI+LL    NP P +  LD T G GG+S+   K      +I +DRD   +
Sbjct: 4   SPHIPVLPSEVISLLQQTKNPNP-QWFLDGTAGEGGHSKLILKTFPEAKLILIDRDAVML 62

Query: 72  SCGQ-ETMRDYK--EQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
              + E +++    ++   FQ  FS+    L   V    +DG + DLGVS        RG
Sbjct: 63  ERAKKEILKEIGSLDRVHAFQMNFSEVDSELLQEVGCPSLDGALVDLGVSLFHFLHSGRG 122

Query: 125 FSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           F+F+   PLDMR+  +  G +A+DVVN ++V  L ++    GEE+ A +IA+ IV+ R  
Sbjct: 123 FTFKNDEPLDMRLEANIGGKTAADVVNYSSVLHLKKVFWEYGEERWALKIANNIVQTRHK 182

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             F T  DL  L++ ++      +  HPATR FQALRI VN E+    +G+R+  + L  
Sbjct: 183 KKFGTNTDLVKLVEASIPRKFWPKESHPATRIFQALRIEVNEELVHAEKGIRALAQCLGI 242

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG+L  +SFHSLEDR+VK  F                      F+ +TKK ++P++ ++ 
Sbjct: 243 GGVLTCISFHSLEDRIVKWTFRDLKDNGP--------------FEILTKKPILPSETEIK 288

Query: 302 FNRRSRSAKLRAGMRTV 318
            NR SRSAKLR  M+  
Sbjct: 289 ENRASRSAKLRGLMKIN 305


>gi|319949143|ref|ZP_08023234.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4]
 gi|319437192|gb|EFV92221.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4]
          Length = 340

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 164/331 (49%), Gaps = 22/331 (6%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS-- 59
            +    T   HVPV LE+ I L  P     A      VI+D T G GG+S          
Sbjct: 6   DADRDATRSGHVPVFLERTIELFRPVVEAAAEEGRAPVIVDGTLGLGGHSSHLLAEFGEL 65

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG----------VVF 109
            V+ +DRDP A+      +  Y+++F+   A F      +     D           ++ 
Sbjct: 66  RVLGVDRDPEALDMATRRLTAYRDRFTPVHARFDDFNSVIAALPPDARDDAGPAIDGILL 125

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168
           D GVSSMQ+D  +RGF++    PLDMRM  + G +A+D++ +    +L RIL + GEE+ 
Sbjct: 126 DFGVSSMQLDVAERGFAYSVDAPLDMRMDPTTGPTAADILAEYPRDELARILRVYGEERF 185

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227
           A +IA AIV+RR + P  T+  L  L+  T+    +    HP  R FQALRI VN E+E 
Sbjct: 186 ARQIAAAIVRRRDTDPIVTSSQLVELLYDTIPQGARRTGGHPGKRVFQALRIEVNAELEA 245

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           +   +      L+ GG  + +++HSLED++VK+  A+R+         +    H   F++
Sbjct: 246 VENAVPGYLDLLRLGGRAVFMAYHSLEDKIVKRELATRTASRTPAGLPVELPGHGPEFEA 305

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           +T+     +QE++  N RS S ++R   R  
Sbjct: 306 VTRGAEKASQEEIDHNPRSASVRVRCVRRID 336


>gi|32266778|ref|NP_860810.1| S-adenosyl-methyltransferase MraW [Helicobacter hepaticus ATCC
           51449]
 gi|42559453|sp|Q7VGP1|RSMH_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|32262830|gb|AAP77876.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 317

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
            H  VL  ++I  L+      +++D T G GG++    +   N  V A D+D +A++  +
Sbjct: 2   KHYSVLKNEMIQALDCLKEDSILIDCTLGFGGHTIGALQAYPNIEVYAFDKDIYALNLAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ Y +        FSQ  D VP+     V G++ D+GVSSMQ+D   RGFSF  S  
Sbjct: 62  ERLKPYLQNIHFCHNAFSQFLDIVPNVVLPRVRGIIADIGVSSMQLDETQRGFSFVSSTL 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                + + ++A+ V+N  +   L  I  I GE +Q+ ++A  I   R+  PF +  +LS
Sbjct: 122 DMRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYERKKKPFSSCLELS 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS----AEKALKAGGLLIVV 248
           +LI++  +F +   IHPAT +FQALRI VN+E+ EL + L +     ++   A   + ++
Sbjct: 182 TLIEQ--HFPRVGGIHPATLAFQALRIEVNDELGELKRLLHNIELAFDEGKIASCRVGII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR++K+ F   S   +            + A  Q +TKK ++PT +++A N+RS
Sbjct: 240 SFHSLEDRIIKQCFKQWSKSCICAEESLRCECGNNHAKGQILTKKPIIPTPQEIAQNKRS 299

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 300 RSAKLRIFE 308


>gi|241257348|ref|XP_002404552.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
 gi|215496661|gb|EEC06301.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
          Length = 292

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 160/289 (55%), Gaps = 9/289 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
             V +D TFG GG+SR      S    +I +D+DP A++  QE +     + ++  + F 
Sbjct: 6   DGVYVDCTFGRGGHSRLLLSHLSPQARLIVIDKDPQAIAVAQE-LAAQDSRVTVVHSGFG 64

Query: 94  QLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVN 149
            L   + +     + GV+ DLG+SS QID  +RGFSF + GPLDMRM  SG  +A   + 
Sbjct: 65  DLAQALDELEVGPLQGVMMDLGISSPQIDDAERGFSFMREGPLDMRMDTSGGLTAEQWLA 124

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHP 209
           + +V+ L  ++   GEE+ A +IA AIV RRQS P  TT+DL+ L+   V   +    HP
Sbjct: 125 EVSVEVLKEVIAEYGEERFAFQIAKAIVDRRQSRPLHTTRDLAELVAGVVRT-REKGQHP 183

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
           ATR+FQA+RI++N E+EELA  L S    L   G L V++FHSLEDR+VK+F  + +   
Sbjct: 184 ATRTFQAIRIYLNRELEELAYALPSILSRLATRGRLAVIAFHSLEDRMVKQFMNAAARPA 243

Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                +             +   ++PT E+ + N R+RSA LR   RT 
Sbjct: 244 QEQSRLPILEKDLPQPLVQSLGRILPTDEESSDNPRARSAVLRVVQRTD 292


>gi|229817311|ref|ZP_04447593.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM
           20098]
 gi|229785100|gb|EEP21214.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM
           20098]
          Length = 354

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 164/321 (51%), Gaps = 15/321 (4%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIA----LLNPAPGKVILDATFGAGGYSRSFCKMGS--NV 61
           TM +    TI  H PVLLE  +      L+     +I+D T G  G++ +F K      +
Sbjct: 2   TMDNRDVSTI--HQPVLLEDCVRLVTGGLSRKQSPIIVDCTLGLAGHATAFLKAAPQARL 59

Query: 62  IALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSM 116
           + +DRD  A++   E M+     ++F    A F +    + D G+  V     DLG+SS+
Sbjct: 60  VGIDRDAEALALATERMKAEGLADRFIPVHAPFDEFTRALDDNGIHHVDAAFMDLGLSSL 119

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           QID  +RGFS+    PLDMRM  S   +A  V+ + + +DL RI  + GEE+ A  IA  
Sbjct: 120 QIDETERGFSYSHDAPLDMRMDVSQALTAEQVLAEYDERDLARIFKVYGEERFARPIARR 179

Query: 176 IV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           IV +R Q  P  T+ +L+ L+ + +  +     +PA R FQALRI VN E+++LA  L  
Sbjct: 180 IVARRTQEGPLTTSAELNELVDEVIPKAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQ 239

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
               L  GG ++V S+HSLED+ VK F        +     I        F+ +T+  V 
Sbjct: 240 IALKLNKGGRIVVESYHSLEDKTVKSFMTQGLTARVPANMPIVPPEAMPFFKELTRGAVK 299

Query: 295 PTQEDVAFNRRSRSAKLRAGM 315
             ++++A N RS S +LRA  
Sbjct: 300 ADEQEIASNPRSASVRLRAVE 320


>gi|301633398|gb|ADK86952.1| S-adenosyl-methyltransferase MraW [Mycoplasma pneumoniae FH]
          Length = 308

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 10/308 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           +   H  VLL++VI  LN       LD T G GG+S+   +      +   D D  +++ 
Sbjct: 3   SNQPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITF 62

Query: 74  GQETMRDYKEQF--SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             E  +D K         A F      +     DG++ DLGVSS Q+D  +RGFSF+ +G
Sbjct: 63  CTELFKDKKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAG 122

Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188
           P DMRM  S    +A D++ + + ++LT +L   GE      IA A+           T 
Sbjct: 123 PFDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNIKNPTTV 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +   ++      F K    +   + FQA+RI++N E+E L   L+   K L   G  +V+
Sbjct: 183 EVAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            FHSLE++LV+ +    +  V      +        F+ ITKK ++PT++++  N R+RS
Sbjct: 243 VFHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRARS 299

Query: 309 AKLRAGMR 316
           AKL    +
Sbjct: 300 AKLFVIEK 307


>gi|294506454|ref|YP_003570512.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8]
 gi|294342782|emb|CBH23560.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8]
          Length = 336

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 112/323 (34%), Positives = 170/323 (52%), Gaps = 20/323 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVL   V A L        +DAT G GG++R+   +      V+ +DRDP A+   ++
Sbjct: 24  HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D +E  +F     TF  L+D +       +DG++ DLGVSS QID  +RGFSF+  G
Sbjct: 84  RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G++A  +VN    +DL  +L   GEE +A +IA A+   R   P  TT+ 
Sbjct: 144 PLDMRMDPQRGLTAQQIVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++  V     + +   TR FQALRI VN E++EL Q L  A + ++ GG +  +S+
Sbjct: 201 LAEVVEDCVPP--PDTVKTLTRVFQALRIAVNAELDELEQALEQATEVVRTGGRIAAISY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK++    + +    R +  +    A +    +  +   + +V  N R+RSA 
Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGT--LVAPWAETPRGPIEAGESEVEANPRARSAH 316

Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333
           LR   R      +D++   LP L
Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335


>gi|71066610|ref|YP_265337.1| S-adenosyl-methyltransferase MraW [Psychrobacter arcticus 273-4]
 gi|71039595|gb|AAZ19903.1| probable S-adenosyl-methyltransferase [Psychrobacter arcticus
           273-4]
          Length = 384

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 164/329 (49%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           H  VLL++ +A +                +     + +DATFG GG+SR      ++   
Sbjct: 60  HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 119

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQ 117
           +I  D+DP A+   QE +     +  +   +F+ L D    +    VDG++ DLG+SS Q
Sbjct: 120 LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 178

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID G RGFSF + G +DMRM    G S ++ +   +   L  +L   GEE+ + RIA AI
Sbjct: 179 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 238

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +  +        ++     K  + +     HPAT+SFQA+RIF+NNE+ ++   L  + 
Sbjct: 239 KQMDRYKSTLELAEV----IKVAHPNWQRGKHPATQSFQAMRIFINNELGDVDNFLEQSI 294

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             LK GG L V+SFHSLEDR +K+F    S G+     ++      P  F    +  V P
Sbjct: 295 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLPMPPKRPRYFSKPKR--VGP 352

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++ +++ N RSRSA LR   RT    + D
Sbjct: 353 SKAEISNNPRSRSAWLRMATRTDTDYLAD 381


>gi|88909214|sp|Q4FQ05|RSMH_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 334

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 164/329 (49%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           H  VLL++ +A +                +     + +DATFG GG+SR      ++   
Sbjct: 10  HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 69

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQ 117
           +I  D+DP A+   QE +     +  +   +F+ L D    +    VDG++ DLG+SS Q
Sbjct: 70  LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 128

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID G RGFSF + G +DMRM    G S ++ +   +   L  +L   GEE+ + RIA AI
Sbjct: 129 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 188

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +  +        ++     K  + +     HPAT+SFQA+RIF+NNE+ ++   L  + 
Sbjct: 189 KQMDRYKSTLELAEV----IKVAHPNWQRGKHPATQSFQAMRIFINNELGDVDNFLEQSI 244

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             LK GG L V+SFHSLEDR +K+F    S G+     ++      P  F    +  V P
Sbjct: 245 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLPMPPKRPRYFSKPKR--VGP 302

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++ +++ N RSRSA LR   RT    + D
Sbjct: 303 SKAEISNNPRSRSAWLRMATRTDTDYLAD 331


>gi|326559297|gb|EGE09724.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 7169]
 gi|326568235|gb|EGE18317.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC8]
 gi|326569935|gb|EGE19982.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC1]
 gi|326573681|gb|EGE23639.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E]
          Length = 330

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 25/328 (7%)

Query: 9   MSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58
           MS+ I  +    H  VLL + +A+      LN        V +DATFG GG+S+   +  
Sbjct: 1   MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60

Query: 59  S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLG 112
           +    +   D+DP A++  +  +     +  +   +F+ L      +    +DG++ DLG
Sbjct: 61  APEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D G RGFSF + G +DMRM    G   S+ + + +  +L  +L   GEE+ + +
Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   
Sbjct: 180 IARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290
           L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F    +
Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPKR 295

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
             + P+ ++V  N R+RSA LR  +R+ 
Sbjct: 296 --IGPSDQEVKANPRARSAWLRGAVRSD 321


>gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi]
 gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi]
          Length = 368

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 123/332 (37%), Positives = 174/332 (52%), Gaps = 31/332 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
             HVPVL +  I  L P P    +D TFGAGG++R        + V ALDRDP A    Q
Sbjct: 37  APHVPVLCQTAIEYLEPRPKGKYIDMTFGAGGHTRRLLDSCPEATVYALDRDPIAYELAQ 96

Query: 76  ETMRD--YKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              ++  Y  +       FS L   + D        DG++FD G SSMQ D   RGFS  
Sbjct: 97  RLSQESAYAGRLVPLLGKFSDLPQLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSIA 156

Query: 129 KSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184
            +GPLDMRM C    G+SA+DV+ +    DL RIL + GEEK A +IA AIV+ R     
Sbjct: 157 HNGPLDMRMDCGRSGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARGALQR 216

Query: 185 FQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT+ L+ L+   +   +         H AT++FQALRIFVNNE+ E+  G+  A++ L
Sbjct: 217 IETTRQLAELVASVLGDGQRQDKLQRPAHLATKTFQALRIFVNNELNEINYGMLLAQEYL 276

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVFQ 286
           +A G L+ ++FHSLED +VK+       + +A    +    H              + +Q
Sbjct: 277 RAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDITHDPALLESFVQSNWQ 336

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            + + V++P   ++A N RSRSAKLRA ++  
Sbjct: 337 QLHRHVILPDATEIASNSRSRSAKLRAAIKIK 368


>gi|306836499|ref|ZP_07469470.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49726]
 gi|304567589|gb|EFM43183.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49726]
          Length = 346

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 165/321 (51%), Gaps = 24/321 (7%)

Query: 20  HVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           HVPV+ E++  LL   PG        V++DAT GAGG+S  F +      VI +DRD  A
Sbjct: 16  HVPVMRERMAELL--RPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQA 73

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQID 119
           +      +  +  +F    A F +           + D     G+ G +FDLGVSSMQ+D
Sbjct: 74  LQNASARLEPFGPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLD 133

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGF+++   PLDMRM    G++A+DV+N  +  DL RIL   G+E+ A +IA A++K
Sbjct: 134 QAERGFAYKTDAPLDMRMDPSHGLTAADVLNSYSHGDLARILKTYGDERFAGKIASAVLK 193

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E +   L     
Sbjct: 194 EREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITS 253

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  G   + +S+ SLEDRLVK  F   S         +        F ++T+     +Q
Sbjct: 254 ALSIGARAVFMSYQSLEDRLVKAAFKELSTSTTPAGLPMDLPGTAPEFATVTRGAEKASQ 313

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
            +V  N R+ S ++RA  R  
Sbjct: 314 AEVEENSRAASVRVRALERLE 334


>gi|311742808|ref|ZP_07716616.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272]
 gi|311313488|gb|EFQ83397.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272]
          Length = 325

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 183/317 (57%), Gaps = 12/317 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCKMGS--NVIALDRD 67
           HT   HVPV L++V+ LL PA           D T G GG++ +  +      V+ +DRD
Sbjct: 9   HTRPSHVPVALDRVLDLLAPAVEAAGEAAVVVDTTLGLGGHTAAMLQRFPDLRVVGIDRD 68

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
           P A+    E + D   + +L  A + ++ D + +   + VDGV+FDLGVSSMQ+D G+RG
Sbjct: 69  PDALRLAAERLADVAGRVTLVHAVYDRIADALDEAGVERVDGVLFDLGVSSMQLDVGERG 128

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ +  PLDMRM  + GI+A++V+N     DL R+L   GEEK A RIA A+V  R   
Sbjct: 129 FAYAQDAPLDMRMDPTTGITAAEVLNTYAAGDLARVLRTYGEEKFARRIADAVVAERDEH 188

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF T+  L  L+++++  + +    +PA R+FQALRI VN+E+    + L +A  AL+ G
Sbjct: 189 PFDTSPRLVDLVRRSIPAAARRTGGNPAKRTFQALRIEVNDELGAYERALPAALSALRPG 248

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+++HSLEDR+ K+ FA  +   +          H A F+S+T+   + +  ++  
Sbjct: 249 GRVVVLAYHSLEDRITKRTFARITTTQVPRDLPFVPAGHAAEFRSLTRGAELASPAEIDE 308

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R++S +LRA  R   
Sbjct: 309 NPRAQSVRLRAVERIAA 325


>gi|320093982|ref|ZP_08025809.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979088|gb|EFW10604.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 355

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H PVLL++ + +L PA   PG V++DAT G GG++    +    +  I +DRDP AV+  
Sbjct: 40  HTPVLLDECLDMLAPAIEGPGSVLIDATLGMGGHTEGALRRFPGLVVIGIDRDPEAVALA 99

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG----VVFDLGVSSMQIDCGDRGFSFQKS 130
            + +  +  +F   +AT+  +   V D    G    V+ DLGVSS+Q+D  +RGFS+ + 
Sbjct: 100 SKRLEGFGPRFLAVRATYDSIGQVVADHAPRGEADGVLMDLGVSSLQLDDAERGFSYSQD 159

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM    G+SA++++  A  +++TRIL   GEE+ A RIA  +V RR + P   T 
Sbjct: 160 APLDMRMDPTRGVSAAELLATAPQEEITRILRAYGEERFAPRIARLVVARRGAQPLTRTG 219

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  ++++ +    +    +PA R+FQALR+ VN+E+  L + L +A  +L+ GG L+V 
Sbjct: 220 QLVDIVREAIPAPARRTGGNPAKRTFQALRVAVNDELAILERALPAALASLRVGGRLVVE 279

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLEDR+VK      S         +  +        +T+        +   N RS S
Sbjct: 280 SYQSLEDRIVKNVLRGGSTVSAPPGLPVVPDEARPRLALLTRGAGRAPASEQEKNPRSAS 339

Query: 309 AKLRAGM 315
            +LR   
Sbjct: 340 VRLRGAE 346


>gi|237785335|ref|YP_002906040.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|263446144|sp|C4LI42|RSMH_CORK4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237758247|gb|ACR17497.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 390

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 112/331 (33%), Positives = 175/331 (52%), Gaps = 23/331 (6%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSN- 60
            +  H     HVPV+LE+++ L+ P        +   VILD T GAGG++ SF +   + 
Sbjct: 1   MADRHTGTHGHVPVMLERMVELIAPTVTESSENSAPSVILDGTLGAGGHTESFLERFPSA 60

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVV 108
            VI +DRD   +S   E +  ++++F    A F    + + D            G+    
Sbjct: 61  MVIGVDRDKKELSRTTERLSRFQDRFYPVHARFDNFDEALDDADHPVVDAFDAHGLSAGF 120

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  DRGF+++  GPLDMRM   +G +A+DV+N  +  +L RIL   G+E+
Sbjct: 121 FDLGVSSMQLDQVDRGFTYRDDGPLDMRMDTSTGKTAADVLNTYSHGELARILKTYGDER 180

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226
            A  +A AIV+ R+  P+ T+Q L  LI  T+  S + +  HPA R+FQALR+ VN E++
Sbjct: 181 FAGPLARAIVREREKEPWSTSQRLVDLIYATIPASARRHGGHPAKRTFQALRVEVNAELD 240

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L + +      L  GG  + +S+ SLED++VK+  A+ +         I        F 
Sbjct: 241 ALRRVIPKVCSYLHLGGRAVFMSYQSLEDKIVKRELAALTESKTPPGLPIDLPNSAPDFH 300

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +T+      +++   N R+ S ++RA  RT
Sbjct: 301 LVTRGSEKADEQENNKNPRAHSVRVRAVERT 331


>gi|187918180|ref|YP_001883743.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH]
 gi|263445877|sp|B2S017|RSMH_BORHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119861028|gb|AAX16823.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH]
          Length = 297

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVLL+++I LL       G + +D T G GG+S +  +   N  VI ++RD   ++  
Sbjct: 6   HTPVLLDEIINLLEIVYVNDGFIFVDCTLGEGGHSSAVLRKYQNISVIGIERDDIILNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E + ++K + S F A F     +Y      + ++ DLG+S        RGFSF +   L
Sbjct: 66  KEFLVEFKGKVSYFNAWFDDFFSEYSLSSKANFILADLGISMFHYKMSGRGFSFFEDERL 125

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR++    G+SA D+VN  +   L  ++   G E  + RI  +I++ R+    +T+++L
Sbjct: 126 DMRLNPGAGGLSAYDIVNTFDKVRLENLIYEFGGEHYSKRIVSSILEYRKIKKIKTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K     K  +I+PAT++FQALRI+VN+E+  L + L     +L   G+L +++FH
Sbjct: 186 QGIISKAYPRIK-LKINPATKTFQALRIYVNDELFRLKRSLPLWVGSLSRNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   S +                   +TKK ++ + E+   N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLSKEQYC---------------ILTKKPIIASFEEKRCNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAIRKLYE 297


>gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti]
 gi|108878145|gb|EAT42370.1| s-adenosyl-methyltransferase mraw [Aedes aegypti]
          Length = 357

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 127/330 (38%), Positives = 180/330 (54%), Gaps = 31/330 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPV+  + I  L P   ++ LD TFGAGG+++   K    + +IALDRDP A       
Sbjct: 28  HVPVMATETIKFLKPQDNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAM 87

Query: 78  MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  Q       FS+L +      V  + +DG++FD G SSMQ D G RGFS  K+GP
Sbjct: 88  AKKYPGQIFPILGRFSELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGP 147

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187
           LDMRM         SA++++ + +  DL RIL I GEEKQA +IA AIV+ R      +T
Sbjct: 148 LDMRMDQDRFPDTPSAAEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIET 207

Query: 188 TQDLSSLIQKTVY------FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           T++L+ ++Q  +              HPAT++FQALRIFVNNE+ E+  G+  A++ LK 
Sbjct: 208 TKELADIVQSCLGSGSFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQRYLKI 267

Query: 242 GGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSI 288
           GG +I ++FHSLED +VK+                      ++  H +  N     +  +
Sbjct: 268 GGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENVMKTSWHQM 327

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           TK VV+P  ++V  N RSRSAKLRA +R  
Sbjct: 328 TKHVVLPGDDEVEQNPRSRSAKLRAVVRVA 357


>gi|255082159|ref|XP_002508298.1| predicted protein [Micromonas sp. RCC299]
 gi|226523574|gb|ACO69556.1| predicted protein [Micromonas sp. RCC299]
          Length = 363

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 23/310 (7%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74
             HVPVL+ +V+   +    +  +D T GAGG++ +  +    +   +  D         
Sbjct: 65  APHVPVLMRQVLDAFDGRSLRCYVDGTMGAGGHASAIIRAHPELRTFVGFDL-------- 116

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              +   +  F   +   ++LQ  + D GVD ++ DLGVSSM +D  +RGFSF   GPLD
Sbjct: 117 --RIHTVQSNFRHMRERLAELQ--LADGGVDAILMDLGVSSMHLDTPERGFSFMNDGPLD 172

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   + +SA+DVVN+   +++ R++   GEEK    +A  I   R  AP +TT+ L  
Sbjct: 173 MRMGPSAKMSAADVVNEWPEEEIARVIRDYGEEKHWRLLARRICDARGIAPIETTRQLVH 232

Query: 194 LIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +   V   ++  IHPATR+FQ +RI VN E+  + + + +A  AL  GG L +++FH
Sbjct: 233 ALGRIPGVKKGRSGGIHPATRTFQGIRIAVNEELAVVEEAIPAAVDALAPGGRLAIITFH 292

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-----IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLED+LVK+ F + +G   A             A P + + +T+K VV   ++V  N RS
Sbjct: 293 SLEDKLVKRAFRTFAGIAPASDRPLSAWEPQPEAPPKIVKLVTRKPVVADDDEVGANARS 352

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 353 RSAKLRVCEK 362


>gi|162148953|ref|YP_001603414.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545294|ref|YP_002277523.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|263455983|sp|A9H0G9|RSMH_GLUDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161787530|emb|CAP57126.1| S-adenosyl-methyltransferase mraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532971|gb|ACI52908.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 338

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 115/298 (38%), Positives = 165/298 (55%), Gaps = 14/298 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE-- 76
           H+PV+L +V+ +L P  G   LD TFG GGY+R+        + A+DRDP A+  GQ   
Sbjct: 9   HIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQ 68

Query: 77  ---TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 +   +  + Q  F  +Q  + +     +DGVV DLGVSS Q+D  +RGFSF+  
Sbjct: 69  AELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTD 128

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM  +G +A+D+VN     DL  I+   GEE+ + R+A AIV  R  AP  TT  
Sbjct: 129 GPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQ 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+  V   + + I PATRSFQ +RI VN+E+ ++  GL  A   L  GG L+VVSF
Sbjct: 189 LADIIRSVVPGDR-SGIDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDRLVK+     +G++       P    +      F+ +T + + P + +   N 
Sbjct: 248 HSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPDFRLLTSRALRPGETECRANP 305


>gi|327540391|gb|EGF26977.1| S-adenosyl-methyltransferase MraW [Rhodopirellula baltica WH47]
          Length = 325

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 101/318 (31%), Positives = 157/318 (49%), Gaps = 33/318 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRD 67
             +HV V+  +++  +       I+D T+G GG++R   ++            VIA+DRD
Sbjct: 25  QTEHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGADSDTPRVIAIDRD 84

Query: 68  PFAVSCGQE--TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           P  V   ++   ++D    E F     +  +  D +     D +V DLG+SS Q+   +R
Sbjct: 85  PAVVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNR 144

Query: 124 GFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRR 180
           GF+F              +G+ A   + Q + K++   +   GEE+ + RIA  I  + R
Sbjct: 145 GFTFTIDDAELDLRFDPENGVPAYRWLQQHSEKEIADAIYQFGEERFSRRIAKQIFLRAR 204

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +  P     +L  + ++ V  S+N+ IHPATR+FQALRI VN+E+  L + L+SA   + 
Sbjct: 205 ERNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIA 264

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + V+SFHSLEDR+VK  F                      ++ +TKK + PT E+V
Sbjct: 265 PGGRVAVISFHSLEDRIVKNAFRE-----------------DHRWEILTKKPLRPTDEEV 307

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N RSRSAKLR   R  
Sbjct: 308 QANPRSRSAKLRVAKRVE 325


>gi|227503272|ref|ZP_03933321.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49725]
 gi|227075775|gb|EEI13738.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49725]
          Length = 346

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 164/321 (51%), Gaps = 24/321 (7%)

Query: 20  HVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           HVPV+ E++  LL   PG        V++DAT GAGG+S  F +      VI +DRD  A
Sbjct: 16  HVPVMRERMAELL--RPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQA 73

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQID 119
           +      +  +  +F    A F +           + D     G+ G +FDLGVSSMQ+D
Sbjct: 74  LQNASARLEPFSPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLD 133

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGF+++   PLDMRM    G++A+DV+N  +  DL RIL   G+E+ A +IA A++K
Sbjct: 134 QAERGFAYKTDAPLDMRMDPSHGLTAADVLNTYSHGDLARILKTYGDERFAGKIASAVLK 193

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E +   L     
Sbjct: 194 EREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITS 253

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  G   + +S+ SLEDRLVK  F   S         +        F ++T+     + 
Sbjct: 254 ALSIGARAVFMSYQSLEDRLVKAAFKDLSTSTTPAGLPMDLPGTAPEFATVTRGAEKASA 313

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
            +V  N R+ S ++RA  R  
Sbjct: 314 AEVEENSRAASVRVRALERLE 334


>gi|150021597|ref|YP_001306951.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429]
 gi|262825837|sp|A6LNR5|RSMH_THEM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149794118|gb|ABR31566.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429]
          Length = 291

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 30/307 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H+PVL  +V+  L      + +D T G GG++    K    S VIA+D D   +   Q+
Sbjct: 7   KHIPVLPNEVVEYLLWKDNGIYVDCTAGEGGHTFLIAKKCPNSRVIAIDVDLEVLEIAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +     L +A++  L   +     + V G++ DLG+S+ Q+    RGFSF +  PL
Sbjct: 67  NLKAFHN-VILLKASYVDLPVVLKSLGIERVSGILADLGISTYQLKAEGRGFSFNRDEPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA  + N  + + L++I+   GEE+ A RIA  I    ++ P  TT++L 
Sbjct: 126 DMRMDIQQDTSAHKITNFYSEEKLSKIIFKYGEERFARRIAKQI---VKNRPINTTKELV 182

Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K +     +  + H AT++FQA+RI VN E++ + Q L++AE+ L+ GG L ++SF
Sbjct: 183 EIIKKALPPSEIRKRKRHFATKTFQAIRIEVNKELKNIEQLLKNAEELLEIGGRLAIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK F  + +                          + PTQE+   N R+RSAK
Sbjct: 243 HSLEDRIVKHFIKNSNNLKHIA------------------GPIKPTQEETKNNPRARSAK 284

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 285 LRVAERI 291


>gi|149409519|ref|XP_001510902.1| PREDICTED: similar to androgen receptor associated coregulator
           267-b [Ornithorhynchus anatinus]
          Length = 436

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 131/335 (39%), Positives = 177/335 (52%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HVPV++ +V+  L P  G+ ILD TFG+GG++R+         + ALDRDP A    Q+ 
Sbjct: 101 HVPVMVNEVVNCLAPQQGQSILDMTFGSGGHARAILHKEPGITLYALDRDPSAYKIAQQL 160

Query: 78  MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  Q       FSQ +       V  + +DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 161 SQTYPNQVRALLGQFSQAETLLLSAGVQPESLDGVLLDLGCSSMQLDTPERGFSLRKDGP 220

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          A DVVN  + + LT IL   GEE+ A +IA AIV+ R   P   T
Sbjct: 221 LDMRMDSGRYPDLPTAGDVVNALDQQALTSILRTYGEERHAKKIASAIVQARTIYPITRT 280

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQA+RIFVN+E+ EL  GL++A+K L+
Sbjct: 281 QQLASIVAGAFPDSALYARKDLLQRSTHIATKTFQAIRIFVNDELNELYAGLKTAQKFLR 340

Query: 241 AGGLLIVVSFHSLEDRLVKKFFAS-----------RSGKVMAVRHMIPSNAHP------- 282
            GG L+ +SFHSLEDR+VK+F              R       R  +             
Sbjct: 341 PGGRLVALSFHSLEDRVVKRFLFKIDITEKFNLSRRKKITQVQRGNVDRENEEESSSDMS 400

Query: 283 -AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              +Q I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 401 HPEWQMIHKKVLTPDTQDVQENPRGRSAKLRAAIK 435


>gi|296117529|ref|ZP_06836113.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969260|gb|EFG82501.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM
           20306]
          Length = 363

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 175/326 (53%), Gaps = 21/326 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALD 65
           I+   G HVPV+  ++  L+ PA        +I+D T GAGG++  F +      VI +D
Sbjct: 25  INDNHG-HVPVMRARMAELIAPAVEAAGENAIIIDGTLGAGGHTEYFLQNFPQARVIGVD 83

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQL-----------QDYVPDKGVDGVVFDLGVS 114
           RD  +++   E +  + ++F      F ++            +     GV G +FDLGVS
Sbjct: 84  RDAASLAEAGERLSPFADRFVGVNERFDEIGSAIAEGDGEVFEIARQHGVAGALFDLGVS 143

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D  DRGF+++   PLDMRM  S GI+A+DV+N  +  +L  IL + G+E+ A +IA
Sbjct: 144 SMQLDQADRGFAYKVDAPLDMRMDPSAGITAADVLNTYSHGELAHILKMYGDERFAGKIA 203

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
            A++K R   PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E + Q +
Sbjct: 204 SAVLKERDKQPFDTSARLVELLYNTIPAATRRTGGHPAKRTFQALRVEVNGELEAIEQVI 263

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
                AL  GG ++ +S+ SLED+LVK  F + +         +      A F++IT+  
Sbjct: 264 PVITSALNIGGRVVFMSYQSLEDKLVKSTFKTLTTSSTPAGLPMDLPGTAAHFKTITRGS 323

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTV 318
              T+ ++A N R+ S ++RA  R  
Sbjct: 324 EKATEAEIAENPRAASVRVRAFERLA 349


>gi|260905297|ref|ZP_05913619.1| S-adenosyl-methyltransferase MraW [Brevibacterium linens BL2]
          Length = 320

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 100/314 (31%), Positives = 169/314 (53%), Gaps = 15/314 (4%)

Query: 20  HVPVLLEKVIALL-----NPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+V+ L+              +++D T G GG+S +        ++I +DRD  
Sbjct: 5   HVPVLLERVVELIGVGVQAARDNGHPPIVVDGTLGMGGHSEAVLTAFPDVHLIGVDRDTQ 64

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+    + +  + ++  +  A   ++ + + D     +  V+ DLGVSS+Q+D  +RGFS
Sbjct: 65  AIDIATKRLAPFVDRTDIVHAVDDEIPEILDDLGVDRISAVLLDLGVSSLQLDEDERGFS 124

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + +  PLDMRM     ++A++V+      +L RIL   GEEK A RIA+ IV  R++ P+
Sbjct: 125 YSRPAPLDMRMDRTQSLTAAEVLATYPEAELRRILREYGEEKMAGRIANIIVTDRETTPW 184

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T+Q L++++ + +  +K  + HPA R+FQALRI VN+E+  L   L  A +AL  GG+ 
Sbjct: 185 ETSQQLAAMLSRVLPQTKK-KSHPAKRTFQALRIEVNDELGVLRTALPEALRALHLGGVA 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++ S+ SLED +VKK F + +         +           I +   +   ++   N R
Sbjct: 244 VIESYQSLEDTIVKKIFRAGTSTSAPPDMPVVPEELQPWLSEIIRGAELADSDEADRNPR 303

Query: 306 SRSAKLRAGMRTVE 319
           ++S +LRA  +  E
Sbjct: 304 AKSVRLRAVQKIRE 317


>gi|32475279|ref|NP_868273.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|42559448|sp|Q7UFX8|RSMH_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|32445820|emb|CAD78551.1| conserved hypothetical protein-putative methyltransferase
           [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 33/317 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRDP 68
            +HV V+  +++  +       I+D T+G GG++R   ++            VIA+DRDP
Sbjct: 26  TEHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGSDSDTPRVIAIDRDP 85

Query: 69  FAVSCGQE--TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
             V   ++   ++D    E F     +  +  D +     D +V DLG+SS Q+   +RG
Sbjct: 86  AVVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRG 145

Query: 125 FSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQ 181
           F+F              +G+ A   + Q + K++   +   GEE+ + RIA  I  + R+
Sbjct: 146 FTFTIDDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARE 205

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P     +L  + ++ V  S+N+ IHPATR+FQALRI VN+E+  L + L+SA   +  
Sbjct: 206 RNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAP 265

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+SFHSLEDR+VK  F                      ++ +TKK + PT E+V 
Sbjct: 266 GGRVAVISFHSLEDRIVKNAFRE-----------------DHRWEILTKKPLRPTDEEVQ 308

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RSRSAKLR   R  
Sbjct: 309 ANPRSRSAKLRVAKRVE 325


>gi|15835162|ref|NP_296921.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg]
 gi|270285334|ref|ZP_06194728.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg]
 gi|270289350|ref|ZP_06195652.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Weiss]
 gi|301336731|ref|ZP_07224933.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum MopnTet14]
 gi|20139249|sp|Q9PKC2|RSMH_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|7190584|gb|AAF39384.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 302

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 158/315 (50%), Gaps = 25/315 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L          D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFQDQHPTTFCDVTVGAGGHAEAFLTSFPSIEHYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  ++ +  +K +  L  A+F ++    PD   DGV+ DLGVSSMQ+   +RGF
Sbjct: 56  RDLSALALSEKRLLPFKGRVCLRHASFDEVNALTPDGMYDGVLADLGVSSMQLTDLERGF 115

Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ           +  GI+AS+V+N    +++  I    GEE      A+A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGITASEVLNSLREEEIGEIFRKYGEEPLWRSAANAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSALRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L ++SF SL+DR VK  F     +                 + +TKKV++PT E+   
Sbjct: 236 GRLAIISFCSLDDRPVKWAFREAEARGE--------------GRVLTKKVIMPTYEETRK 281

Query: 303 NRRSRSAKLRAGMRT 317
           N RSRSAKLR   ++
Sbjct: 282 NPRSRSAKLRCFEKS 296


>gi|120609507|ref|YP_969185.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1]
 gi|263433318|sp|A1TKC3|RSMH_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120587971|gb|ABM31411.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1]
          Length = 311

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 160/304 (52%), Gaps = 15/304 (4%)

Query: 26  EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78
           ++ +  L     PAP  V +DATFG GG+SR   +       ++A D+DP A+       
Sbjct: 15  DEAVDALLGGAGPAPAGVWIDATFGRGGHSRRILERLGPDGRLVAFDKDPEAIHEAARI- 73

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
                +FS+    F  L D   ++   G++ DLGVSS QID  +RGFSF+  GPLDMRM 
Sbjct: 74  --TDARFSIRHEGFRHLADLP-ERSAAGILMDLGVSSPQIDSPERGFSFRFDGPLDMRMD 130

Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G S +D +  A+V  +  ++   GEE+ A  IA AI  RR       T    + +  
Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
               ++    +PATR+FQALRIF+N E+EEL   L ++ + L  GG L V+SFHSLEDR+
Sbjct: 191 GAVKTREAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+F A  S +V   R    +   P   +++ +  + P   +V  N R+RSA +R   RT
Sbjct: 251 VKQFIAQHSREV-YDRRAPFAAPQPMRLKALDR--IKPGACEVDANPRARSAVMRVAERT 307

Query: 318 VERS 321
              +
Sbjct: 308 EVPA 311


>gi|227543126|ref|ZP_03973175.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181114|gb|EEI62086.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 354

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 20/325 (6%)

Query: 15  HTIGDHVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
                HVPVL ++++ LL           + +D T GAGG++         + VI +DRD
Sbjct: 26  QENHGHVPVLRDRMVELLRRGIAVDGATGIAVDGTLGAGGHTEHLLATDPNARVIGVDRD 85

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSM 116
             A+      +  + ++F      F +  +                     +FDLGVSSM
Sbjct: 86  AQALKDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSM 145

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF+++   PLDMRM    GI+A+DV+N  +  DL R+L   GEEK A +IA A
Sbjct: 146 QLDQEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASA 205

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +++ R+  PF  +  L  L+  T+    + +  HPA R+FQALR+ VN E+  L Q +  
Sbjct: 206 VIREREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPV 265

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
              AL  GG+++ +S+ SLED++VKK  A  +         +        F  +T+    
Sbjct: 266 TADALHVGGVMVFMSYQSLEDKIVKKALARLTTSTNPPGLPVDLPGTEPHFALVTRGSEK 325

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
            +++++  N R+ S ++RA  R + 
Sbjct: 326 ASKKEIDQNPRAASVRVRAAQRVLN 350


>gi|152967151|ref|YP_001362935.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans
           SRS30216]
 gi|263456185|sp|A6WCY2|RSMH_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151361668|gb|ABS04671.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 166/313 (53%), Gaps = 10/313 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           H     H  V+LE+   +L+PA   PG V +D T G GG++    +      ++ +DRDP
Sbjct: 22  HDAARRHASVMLERCTRVLSPALDHPGAVTVDVTLGMGGHAHELLRRHPGLRLVGMDRDP 81

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125
            A+      + ++ ++ +L  +    L + + D     VD V FDLGVSS+Q+D  +RGF
Sbjct: 82  QALELAAHRLHEFADRITLVHSVSDGLGEALDDLGLDTVDAVFFDLGVSSLQLDEAERGF 141

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ +   LDMRM   +  +A+DV+N  +   LTRIL + GEE+ A RIA AIV+ R   P
Sbjct: 142 SYARDTALDMRMDPGAPTTAADVLNTYSHSQLTRILRVYGEERFAPRIASAIVRERALEP 201

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F ++  L  L++  V   ++    +PA R+FQALRI VN+E+  + + L  A + L   G
Sbjct: 202 FTSSARLVDLVRANVPAATRRTGGNPAKRTFQALRIEVNDELGVVERSLPVAFERLAPEG 261

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V++FHSLEDR+VK      S                   + +T+      + ++A N
Sbjct: 262 RLAVLTFHSLEDRIVKNALRELSSSSAPPDLPFVPAGSGPRAELLTRGGETADEAELAEN 321

Query: 304 RRSRSAKLRAGMR 316
            R+ SA+LRA  R
Sbjct: 322 PRAASARLRAVRR 334


>gi|87123572|ref|ZP_01079423.1| methyltransferase [Synechococcus sp. RS9917]
 gi|86169292|gb|EAQ70548.1| methyltransferase [Synechococcus sp. RS9917]
          Length = 305

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 31/316 (9%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIAL 64
           +       HVPVL + ++  L           ++LDAT G GG+SR   +     ++I L
Sbjct: 6   STSAQAFSHVPVLADVLLQALQEHADPRWQQGLLLDATLGGGGHSRLLLEHYPGLHLIGL 65

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           D+D  A +   E +    E+  +    F+    Y P++ V  ++ DLGVSS Q+D  +RG
Sbjct: 66  DQDSTARAAAAEHLLPCAERVRIVATNFA---TYRPEEPVALLLADLGVSSPQLDVAERG 122

Query: 125 FSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RR 180
           FSF+ +GPLDMRM+  G   +A++++ +    DL  ++   GEE+ + RIA  I      
Sbjct: 123 FSFRHNGPLDMRMNPEGGGETAAELIARLEESDLADLIYAYGEERLSRRIARRIKADLAA 182

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q A   T     ++       ++  RIHPATR+FQALRI +N+E+  L + L +A   L+
Sbjct: 183 QGAYAGTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAINDELGVLDKLLSAAPDWLQ 242

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GGLL ++SFHSLEDR VK  F                       + IT++ +V ++++ 
Sbjct: 243 PGGLLAIISFHSLEDRRVKTAF-----------------LQDQRLERITRRPLVASEQEQ 285

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSAKLR   R
Sbjct: 286 ERNPRSRSAKLRIARR 301


>gi|159902730|ref|YP_001550074.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9211]
 gi|226709923|sp|A9BD32|RSMH_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159887906|gb|ABX08120.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 305

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 170/317 (53%), Gaps = 30/317 (9%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVI-----LDATFGAGGYSRSFCKMGS--NVIALD 65
           +  +  +H PVL  ++I ++   P  +I     +DAT G GG+S    +     +VI LD
Sbjct: 7   VATSTFNHTPVLANELIEIIKKLPEDLIKNCLIIDATIGGGGHSSLVLETFPGISVIGLD 66

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP AV+   E ++ + ++  +    FS    + P K V  V  DLGVSS Q+D G RGF
Sbjct: 67  QDPKAVAAASEHLKIFGDRAKIETTNFSN---FTPSKKVAMVFADLGVSSPQLDEGSRGF 123

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182
           SF+ +GPLDMRM+   G +A++++++ +  +L  ++   GEE+ + RIA  I     +Q 
Sbjct: 124 SFRLNGPLDMRMNQIDGTNAAELIDRLSENELANLIFKYGEERFSRRIAKRIKHDLAKQG 183

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T     ++        +N R+HPAT++FQALRI +N+E++ L+  L+ A + L   
Sbjct: 184 PYSGTIALAYAIAGCYPPKLRNRRVHPATKTFQALRIAINHELDVLSVLLKKAPEWLLDD 243

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           GL  V+SFHSLEDRLVKK F                       + IT+K ++ T  +++ 
Sbjct: 244 GLFAVISFHSLEDRLVKKSF-----------------LTDTRLERITRKPLIATTNEISI 286

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAK+R   R   
Sbjct: 287 NPRSRSAKMRVARRIEA 303


>gi|195444651|ref|XP_002069965.1| GK11803 [Drosophila willistoni]
 gi|194166050|gb|EDW80951.1| GK11803 [Drosophila willistoni]
          Length = 368

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 123/335 (36%), Positives = 171/335 (51%), Gaps = 32/335 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           +   HVPVL E  I  LNP      LD TFGAGG++R          V ALDRDP A   
Sbjct: 34  SSSPHVPVLCEVAIEYLNPKRNGNYLDMTFGAGGHTRRLLDTCSDCKVYALDRDPLAHQL 93

Query: 74  GQET--MRDYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFS 126
             E     +YK +       FS L   +          DG+++D G SSMQ D  +RGFS
Sbjct: 94  AIEMSQKEEYKGRLVPLFGKFSDLPQLLDGQNLSRNSFDGMLYDFGCSSMQFDVANRGFS 153

Query: 127 FQKSGPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QS 182
             ++GPLDMRM        SA+DV+ +A   DL RIL + GEEK A +IA AIV+ R   
Sbjct: 154 ISQNGPLDMRMDGGRGGGISAADVLARAEEDDLARILRVYGEEKAAKKIARAIVEARGAL 213

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
              +TT+ L+ L+   +  S + +       H AT++FQALRIFVNNE+ E+  G+  A 
Sbjct: 214 QRIETTKQLADLVAAVLGDSSHRQDKLQRPSHAATKTFQALRIFVNNELNEINYGMLLAN 273

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PA 283
           + L   G L+ ++FHSLED +VK+       +  A    +    H               
Sbjct: 274 EVLCPEGRLVAITFHSLEDTIVKRHLNGNVIEGRANPVPLKYCGHDVTLDPQLMQSFVQI 333

Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            ++ + + V++P  E++A N RSRSAKLRA ++  
Sbjct: 334 KWRQLHRHVILPDAEEIARNSRSRSAKLRAAIKIK 368


>gi|217076157|ref|YP_002333873.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B]
 gi|262825832|sp|B7IEL8|RSMH_THEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217036010|gb|ACJ74532.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B]
          Length = 291

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 28/306 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PV+ ++VI  L      + +D T G GG++     +  +  VI LD D   ++  ++
Sbjct: 7   KHIPVMPKEVIEHLIWKKDGIYVDCTVGEGGHTLLLASISPDIFVIGLDIDSEVLNIAEK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +     F         +   +  + V G++ DLG+S+ Q+    RGF+F +  PLD
Sbjct: 67  NLSSFTNVKLFKSSYVDLPVVLKALNIEKVSGILIDLGISTYQLKAEGRGFTFNRDEPLD 126

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     +A DVVN  + K+L  I+   GEE+ + RIA +IV  R   P  +T +L  
Sbjct: 127 MRMNLEQKKTAYDVVNFYSEKELADIIFKYGEERFSRRIARSIVNSR---PINSTLELVE 183

Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            I+K +     +  + H AT++FQA+RI VN E+  +   L +    L+ GG L V+SFH
Sbjct: 184 AIRKALPPQEIRKRKRHFATKTFQAIRIEVNGELSNIENFLNNVPDLLEIGGRLAVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + +     V                    ++P++E++  N R+RSAKL
Sbjct: 244 SLEDRLVKHFIKNSNKLRQIV------------------GPIIPSKEEIDENPRARSAKL 285

Query: 312 RAGMRT 317
           R   R 
Sbjct: 286 RIAERI 291


>gi|195953230|ref|YP_002121520.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1]
 gi|263456148|sp|B4U8T1|RSMH_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|195932842|gb|ACG57542.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1]
          Length = 296

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 27/313 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
            H  VLL++V   L+    K+ +DAT G GG++++  +    + +I +D+D  A+   +E
Sbjct: 1   MHKSVLLKEVTDFLSNPCPKIHIDATLGLGGHAKALLEVCKDTFLIGIDKDENAIEIAKE 60

Query: 77  TMRDYKEQFSL-FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++ +   F       F  +         D ++FD GVSS+Q+D  + GFSFQ+   LDM
Sbjct: 61  KLKGFNAVFYHGSFKDFDIVLKEEGLLYFDSILFDFGVSSLQLDEEE-GFSFQREDFLDM 119

Query: 136 RMSCSGISASDV-VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM       + + +N    K+L  I    GEE+ + +IA +IV++R+  P +TT++L  +
Sbjct: 120 RMDKRQQKTAYIVINTYKEKELADIFYKYGEERLSKKIARSIVEKRKKKPIETTKELVDI 179

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +    Y  K ++I+PAT+ FQALRI VN+E+E++   L       K G     +SFHSLE
Sbjct: 180 VSSC-YPYKYSKINPATKVFQALRIEVNSELEDIKIALSKLLDFAKEGSKFAFISFHSLE 238

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DRLVK+F  + + K                 +  +KK + P+ E++ +N+R+RSAKLR  
Sbjct: 239 DRLVKEFIKNNADK----------------LKVCSKKPITPSDEELLYNKRARSAKLRCA 282

Query: 315 -----MRTVERSI 322
                 +  E   
Sbjct: 283 KLCYNEKKDEAFD 295


>gi|295111738|emb|CBL28488.1| S-adenosyl-methyltransferase MraW [Synergistetes bacterium SGP1]
          Length = 303

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 25/311 (8%)

Query: 17  IGDHVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +  H PVLL +V++ L+    P     I+D T G GGYS +  +      V  +DRDP A
Sbjct: 1   METHEPVLLPEVLSFLSEASEPRRALRIVDGTLGLGGYSEAILRAFPDGRVWGVDRDPDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +   +  +  +  +F    A F  +      +   D  VFDLGVS++Q+    RGFSFQ+
Sbjct: 61  LRLAKGRLSAFAPRFCAVHANFGDIAGVLEGEAPFDAFVFDLGVSNLQLTEAARGFSFQQ 120

Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQ 186
            GPLDMRM   G   SA++V++  +  +L RI    G+E+ + RIA+  I +R +    +
Sbjct: 121 DGPLDMRMDPGGGAPSAAEVLSGLSADELARIFWEYGDERYSRRIANGIIQRRARGLRLE 180

Query: 187 TTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT +L +LI++ +     +    HPA R FQALRIFVN+E+  +   L +       G +
Sbjct: 181 TTGELVTLIREVLPAPVQRKMGTHPARRVFQALRIFVNDELSAIESMLATLPTLAGEGCV 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +VVS+HSLEDR+VK  F S                   + +++T+  ++P +E+   N 
Sbjct: 241 AVVVSYHSLEDRIVKHRFRSWEK-------------EKGLGRALTRHPLLPQEEERTRNY 287

Query: 305 RSRSAKLRAGM 315
           RSRSAKLRA  
Sbjct: 288 RSRSAKLRAFR 298


>gi|291278991|ref|YP_003495826.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753693|dbj|BAI80070.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1]
          Length = 306

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
            H PVL  ++I+        VI+D T G GG++    K      +I LDRD  A+    E
Sbjct: 1   MHKPVLYNELISFFKGLKNGVIVDCTGGGGGHAEGILKEIKPERLIILDRDEDAIKRLNE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +  +    ++++ FS++   +     + V+G+  D GVS+  +    RGFSF+++GPL
Sbjct: 61  KFKGMEN-VEIYKSNFSEIDSVLQSLKIEKVNGLYADFGVSNFHLLDSKRGFSFRRNGPL 119

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  VVN+ + + L  I    GEE+ AS+IA AIVK R+S    TT +L+
Sbjct: 120 DMRMDKSLYLTAEKVVNEYSAETLKNIFRKFGEERFASKIADAIVKTRKSKRITTTLELA 179

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +    +   +HPAT+ F ALRIF+NNE+E +   L+     +  GG++  +SFH
Sbjct: 180 EIVKNAIPERFHKPGVHPATKVFMALRIFINNELESIESLLKKLPTIVDKGGIVAFISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK++        +        +      F+ +TKK + PT++++  N  SRSAK
Sbjct: 240 SLEDRLVKEYLQYYEKSCICPPDYPVCNCDKEKQFKILTKKPITPTEKEITENPLSRSAK 299

Query: 311 LRAGMRT 317
           +R G+R 
Sbjct: 300 MRVGVRV 306


>gi|154148181|ref|YP_001406384.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC
           BAA-381]
 gi|171769702|sp|A7I1J3|RSMH_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|153804190|gb|ABS51197.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC
           BAA-381]
          Length = 310

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL  +V+ +       +++D T G  G+S +         + A D+D  A+   ++
Sbjct: 4   PHIPVLRNEVVDIFKDLQ-GLLIDCTLGFAGHSSAILSANENIRIFACDKDDEALDFSKK 62

Query: 77  TMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +K +  +F++ FS         + +    V G++ D+GVSS+QID  DRGFS +  
Sbjct: 63  RVEIFKNRIKIFKSGFSNFLPFLETNEILNLSNVVGILADIGVSSLQIDNNDRGFSLKSD 122

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
                    + + A  VVN  +  DL RI     E   A +IA  I   R      + ++
Sbjct: 123 ALDMRMDKNASLDAKFVVNHYSRSDLERIFYEFAELTNAKQIAAKIANYRADKEITSAKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+++I  +    KN  I  AT +FQA+RI VN E++EL + L S E +      + +++F
Sbjct: 183 LATIIGTS--NFKNRSISTATLAFQAIRIEVNKELDELNKLLDSIENSAIQNAKIAIITF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLED++VK  F   +   +            + A+ + +TKK +  + +++  N R++S
Sbjct: 241 HSLEDKIVKNRFKKWAQSCICPPFFERCECGNNHAIGKILTKKPITASADELKQNSRAKS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVFE 307


>gi|15827426|ref|NP_301689.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae TN]
 gi|221229903|ref|YP_002503319.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae Br4923]
 gi|13092976|emb|CAC31287.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933010|emb|CAR71001.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 372

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 18/323 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
            ++  HVPV  ++ + LL PA           +++DAT G GG++  F        +I L
Sbjct: 37  SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 96

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   +   G       DGV+FDLGVSSMQ+
Sbjct: 97  DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 156

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           DC +RGFS+ +  PLDMRM   S +SA+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 157 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 216

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +    +    HPA R+FQALRI VN+E+  L+  L +A 
Sbjct: 217 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 276

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL   G L+V+++ SLEDR+VK+ FA            I    H   F+ +T+      
Sbjct: 277 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 336

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             ++  N RS + +LRA  RT  
Sbjct: 337 AAEIECNPRSAAVRLRALQRTQH 359


>gi|8134827|sp|O69560|RSMH_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460319|sp|B8ZQP2|RSMH_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3080481|emb|CAA18676.1| hypothetical protein MLCB268.10c [Mycobacterium leprae]
          Length = 340

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 18/323 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
            ++  HVPV  ++ + LL PA           +++DAT G GG++  F        +I L
Sbjct: 5   SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 64

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   +   G       DGV+FDLGVSSMQ+
Sbjct: 65  DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 124

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           DC +RGFS+ +  PLDMRM   S +SA+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 125 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 184

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +    +    HPA R+FQALRI VN+E+  L+  L +A 
Sbjct: 185 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 244

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL   G L+V+++ SLEDR+VK+ FA            I    H   F+ +T+      
Sbjct: 245 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 304

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             ++  N RS + +LRA  RT  
Sbjct: 305 AAEIECNPRSAAVRLRALQRTQH 327


>gi|283783556|ref|YP_003374310.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05]
 gi|298252636|ref|ZP_06976430.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis 5-1]
 gi|283442079|gb|ADB14545.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05]
 gi|297533000|gb|EFH71884.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis 5-1]
          Length = 345

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/318 (32%), Positives = 165/318 (51%), Gaps = 11/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63
           M+ A+      H PVLL+  + L+ P     G +++D T G  G++ +F K      +I 
Sbjct: 1   MTDAMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60

Query: 64  LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118
           +DRD  A+S   + MR      +F    A F ++ + + +  +D +     DLG+SS+QI
Sbjct: 61  IDRDSEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLQENSIDRIDAAFMDLGLSSLQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGFS+     LDMRM  +  + +  +    + ++LTRI    GEE+ AS IA  IV
Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRELTRIFREYGEERFASPIARRIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R + P  T+  L SL+   +  +     +PA R FQALRI VN E+++L++ L     
Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSRTLPKIAL 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L+  G L+V S+HSLED  VK+F        +     +  +     F+++T+  +  ++
Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300

Query: 298 EDVAFNRRSRSAKLRAGM 315
           E++  N RS S +LRA  
Sbjct: 301 EEIVHNTRSSSVRLRAVE 318


>gi|83816833|ref|YP_444696.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855]
 gi|123529490|sp|Q2S535|RSMH_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83758227|gb|ABC46340.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855]
          Length = 336

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 112/323 (34%), Positives = 169/323 (52%), Gaps = 20/323 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVL   V A L        +DAT G GG++R+   +      V+ +DRDP A+   ++
Sbjct: 24  HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D +E  +F     TF  L+D +       +DG++ DLGVSS QID  +RGFSF+  G
Sbjct: 84  RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G++A  VVN    +DL  +L   GEE +A +IA A+   R   P  TT+ 
Sbjct: 144 PLDMRMDPQRGLTAQQVVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++        + +   TR FQALRI VN E++EL Q L  A + ++ GG +  +S+
Sbjct: 201 LAEVVEDCAPP--PDTVKTLTRVFQALRIVVNAELDELEQVLEQATEVVRTGGRIAAISY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK++    + +    R +  +    A +    +  +   + +V  N R+RSA 
Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGT--LVAPWAETPRGPIEAGESEVEANPRARSAH 316

Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333
           LR   R      +D++   LP L
Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335


>gi|255020004|ref|ZP_05292077.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC
           51756]
 gi|254970533|gb|EET28022.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC
           51756]
          Length = 324

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 14/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APG-KVILDATFGAGGYSRSF---CKMGSNV 61
           M+ A   T   H PVLL +V+A   P    PG ++ +DAT G GG+S +          +
Sbjct: 1   MTDA-QDTDTSHQPVLLAEVLAACTPLLGQPGPRLWVDATGGRGGHSAALAHLLGAQDRL 59

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
           + LDRDP A++  +    +  E+ S+ QA FS++   + +        ++ DLGVSS Q+
Sbjct: 60  LVLDRDPGAIAFLRTRFAE-DERVSVRQAEFSRVAQVLAEMGTGQAQFILADLGVSSPQL 118

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF + GPLDMRM+   G+SA+  +  A   ++ ++L   GEE++A RIA AIV
Sbjct: 119 DRPERGFSFLRDGPLDMRMNPEQGMSAAQWLATAEAAEIAQVLRDYGEEREARRIARAIV 178

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R   P   T  L+ L+   +  ++   IHPATR+FQA+R+ +N+E+ E+   L +A  
Sbjct: 179 RERAVRPLTRTTQLAELVAGLLPRARAQAIHPATRTFQAIRMHINDELAEIRAFLPAAMD 238

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           +L   G L V+SFHSLEDRLVK+FF + + +      +       A +  + +     + 
Sbjct: 239 SLGPDGRLAVISFHSLEDRLVKRFFRADTRQPDPDLPLRNWEIPEAPWFPLGR-ASRAST 297

Query: 298 EDVAFNRRSRSAKLRAGMRTVER 320
           E+VA N R+RSA LR   +  + 
Sbjct: 298 EEVAHNPRARSATLRVAQKRGDP 320


>gi|289740101|gb|ADD18798.1| putative SAM-dependent methyltransferases [Glossina morsitans
           morsitans]
          Length = 381

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/334 (35%), Positives = 178/334 (53%), Gaps = 33/334 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73
           +   H PVL  + I  LNP P K+ +D TFGAGG+ +          V ALDRDP A   
Sbjct: 46  SNSSHTPVLCAEAINYLNPGPQKIYIDMTFGAGGHCKKLLDSCKDIKVYALDRDPVAYEL 105

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            Q+  ++Y+ + +     FS L   + +       VDG++FD G SSMQ +  +RGFS  
Sbjct: 106 AQQMTKEYEGRLTPLLGRFSDLPHLLKEQNIVRHSVDGILFDFGCSSMQFEEPERGFSVS 165

Query: 129 KSGPLDMRMSC------SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQ 181
           K+GPLDMRM C        ++A+DV+ +A   DL +IL I GEEK A +IA AI   R  
Sbjct: 166 KNGPLDMRMDCAPGMNNDQVTAADVLARAEEPDLVKILRIYGEEKAAKKIARAIVDARSA 225

Query: 182 SAPFQTTQDLSSLIQKTVYFSK------NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
             P +TT+ L+ L+   ++ +           H AT++FQALRIFVNNE+ E+  G+  A
Sbjct: 226 LHPIKTTKQLADLVASCLHETPFRLDKLQRPTHVATKTFQALRIFVNNELNEINYGMVLA 285

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------------- 282
              L+  G L+ ++FHSLED +VK+         +A    +    +              
Sbjct: 286 NAYLRLQGRLVAITFHSLEDTIVKRHLYGNVIDGLANPVPLKYCGYDVVHDEETMQSITL 345

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + ++ + K V++P +E++  N RSRSAKLRA ++
Sbjct: 346 SNWKPLHKHVILPGEEEIKHNSRSRSAKLRAAVK 379


>gi|319778491|ref|YP_004129404.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis
           MCE9]
 gi|317108515|gb|ADU91261.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis
           MCE9]
          Length = 288

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 9/286 (3%)

Query: 40  ILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
            +D TFG GG+SR         S ++  D+DP A+    E+++    +  +    FS + 
Sbjct: 2   YVDGTFGRGGHSRYLLSLLDKNSKLVVFDKDPMAIEAA-ESLKKEDGRVLVVHGAFSTMS 60

Query: 97  DYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152
           D + D     VDG+  DLG+SS QID G RGFSF + GPLDMRM    G++A++ +  A+
Sbjct: 61  DVLSDFGITKVDGITMDLGISSPQIDDGTRGFSFMRDGPLDMRMDNSKGLTAAEWLASAD 120

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
           V+ + +++   GEE+ A +IA AI  RR+  P +TT +L+ LI      ++    HPATR
Sbjct: 121 VELIAKVIKEYGEERFAFQIAKAIASRREHNPIRTTHELAELI-AANVRTREKGQHPATR 179

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           +FQA+RI++N E+EEL++ L SA + LK GG L V+SFHSLEDR+VK+F A  S      
Sbjct: 180 TFQAIRIYINEELEELSRSLTSAIELLKVGGRLSVISFHSLEDRIVKQFIAKESNPASEF 239

Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
             +             +   +  T++++  N RSRSA LR   R  
Sbjct: 240 ARLPIREVDMPKGNLKSLGKLTATEDEILKNPRSRSAILRVAERIE 285


>gi|156551077|ref|XP_001602807.1| PREDICTED: similar to GA13173-PA [Nasonia vitripennis]
          Length = 426

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 125/335 (37%), Positives = 174/335 (51%), Gaps = 35/335 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
              H PV+L++ I  L  +PG  I+D TFGAGG+SR   +   +V   ALDRD  A +  
Sbjct: 94  HQPHTPVMLKETIEYLKLSPGDTIVDMTFGAGGHSRKILESVPHVTIFALDRDEVAHNYA 153

Query: 75  QETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +E    Y  Q       FS+L        V +  +DG +FD G SSMQ D  +RGF   K
Sbjct: 154 KELAEKYPGQVIPLLGRFSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGFMISK 213

Query: 130 SGPLDMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184
           +GPLDMRM         +A+DV+ +A+ +DL  IL   GEEK+A +IA AI++ R     
Sbjct: 214 NGPLDMRMDGFRCPEEPTAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARYTFRS 273

Query: 185 FQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TTQ+L+ LI+       N        H AT++FQALRIFVNNE+ E+  G+  AEK L
Sbjct: 274 LRTTQELAKLIESLFPSDINTDQIGRFQHSATKTFQALRIFVNNELNEINHGIVIAEKLL 333

Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----------------ASRSGKVMAVRHMIPSNAHPA 283
           K  G +I +SFHSLED +VK+                   +          ++     P 
Sbjct: 334 KINGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDIMELTESP- 392

Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            +  + K ++ PT E+V +N RSRSAK RA  +  
Sbjct: 393 -WMMLHKHILSPTDEEVYYNPRSRSAKFRAIAKIK 426


>gi|242018707|ref|XP_002429815.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus
           corporis]
 gi|212514833|gb|EEB17077.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus
           corporis]
          Length = 382

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/330 (35%), Positives = 169/330 (51%), Gaps = 29/330 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H PV+L +VI  L+   G + LD TFG+GG+S        ++  +ALDRDP A      
Sbjct: 49  PHEPVMLNEVIKNLDLKKGNLFLDMTFGSGGHSLELLNRVPDLKILALDRDPIAYEYALN 108

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               + +        FS L   + D       +DG++ DLG SSMQ D  +RGFS    G
Sbjct: 109 AKEKHPDNIYPLLGKFSDLPKLLNDNNIKANTIDGILLDLGCSSMQFDTPERGFSINNDG 168

Query: 132 PLDMRMSCSGISAS----DVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQ 186
           PLDMRM C  I  S    DV+  A   +L  I    GEEK++ +IA AI + R    P +
Sbjct: 169 PLDMRMDCDRIKGSLTAGDVIAHATEMELYNIFKKYGEEKRSRKIARAITQMRNTFKPIK 228

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPA----TRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           TT+DL+ LI   +   + ++++      T+ FQALRIFVNNE+ EL   +  A   LK G
Sbjct: 229 TTKDLNDLISVVLTDVRYDKLNRKTGTGTKIFQALRIFVNNELNELNYAMTLAHHYLKVG 288

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-------------PSNAHPAVFQSIT 289
              +V++FHSLED +VK+ F ++          +              ++ +   +  + 
Sbjct: 289 SRAVVLTFHSLEDVIVKRHFKNQHQLNYVQNLPLNMINSLKTYDECEFNSFNKQYWIPVN 348

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KKV++P   +V  N RSRSAKLRA ++T E
Sbjct: 349 KKVLIPDSFEVCNNPRSRSAKLRAAIKTQE 378


>gi|118474367|ref|YP_891757.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus
           82-40]
 gi|263445750|sp|A0RNH4|RSMH_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118413593|gb|ABK82013.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus
           82-40]
          Length = 307

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 6/301 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75
             H+PVLL+ V+          ILD T G GG+S +      N+  IA DRD  ++S  +
Sbjct: 3   SPHIPVLLKPVLNSFKDIKNGTILDCTLGYGGHSEAILISNPNLKIIACDRDSESLSFCK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                Y ++  ++++ F+ + + +  + + G++ D+GVSS+Q+D  +RGFS   +     
Sbjct: 63  AKFEKYSDRIKIYKSNFAGILNKIDHEDIRGILADIGVSSLQLDLDERGFSINSNNLDMR 122

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
                  SA +++N  +   L  I     E   A  +A  IV  R  +P ++ ++LSS+I
Sbjct: 123 MDKNQTFSAKELINSYSKDQLADIFYKYAELPNAKSLAQKIVDARDKSPIKSAKELSSII 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            ++    KN  +  A  +FQA+RI VN E++EL   L   + +     +L ++SFHSLED
Sbjct: 183 GRS--NLKNRSVSIAILAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           ++ K  F       +    +       + ++ + +TKK + P+++++  N RS  AK+R 
Sbjct: 241 KIAKSTFKEWEKSCICDNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRI 300

Query: 314 G 314
            
Sbjct: 301 F 301


>gi|195107446|ref|XP_001998323.1| GI23693 [Drosophila mojavensis]
 gi|193914917|gb|EDW13784.1| GI23693 [Drosophila mojavensis]
          Length = 362

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 122/330 (36%), Positives = 171/330 (51%), Gaps = 31/330 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPVL E  I  L P PG   +D TFGAGG++R          V ALDRDP A    Q  
Sbjct: 33  HVPVLCETAIEYLQPKPGGKYIDMTFGAGGHTRKLLDSCPETTVYALDRDPVAHQLAQRM 92

Query: 78  MRDYK--EQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++     +       FS L   +       +  DG++FD G SSMQ D   RGFS    
Sbjct: 93  SQEQNYEGRLIPMLGKFSDLPQLLQALDVPPRSFDGMLFDFGCSSMQFDEAARGFSIAHD 152

Query: 131 GPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187
           GPLDMRM C   G+SA+DV+ +    DL RIL + GEEK A +IA AIV+ R      +T
Sbjct: 153 GPLDMRMDCGRGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARNALQRIET 212

Query: 188 TQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEK-ALKA 241
           T+ L+ L+   +             H AT++FQALRIFVNNE+ E+  G+  A++  L+A
Sbjct: 213 TRQLADLVAAVLGEGHRRDKLQRPSHVATKTFQALRIFVNNELNEINYGMVLAQELLLRA 272

Query: 242 GGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSI 288
            G L+ ++FHSLED +VK+                  SG  +     +  +   + ++ +
Sbjct: 273 QGRLVAITFHSLEDTIVKRHLNGNVIEGVANPLPLKYSGHDLTHDPELMESFVRSNWRQL 332

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            + V++P   ++A N RSRSAKLRA ++  
Sbjct: 333 HRHVILPDASEIARNSRSRSAKLRAAVKIK 362


>gi|225021917|ref|ZP_03711109.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945304|gb|EEG26513.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 341

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/344 (33%), Positives = 179/344 (52%), Gaps = 27/344 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGSNV- 61
           M +  +H    HVPVL E+V  LL PA         +ILDAT GAGG+S  F      V 
Sbjct: 1   MENTNNHG---HVPVLRERVTELLAPALCNTTTNPPIILDATLGAGGHSEYFLTTFPQVN 57

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106
            I LDRD  A++     + ++ ++ +     F      +                +G+ G
Sbjct: 58  IIGLDRDTTALAQAATRLANFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117

Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165
            +FDLGVSSMQ+D  +RGF+++   PLDMRM+   GI+A++++N     +LTRIL   G+
Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGNLTRILKTYGD 177

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNE 224
           E+ AS+IA AI++ R+ APF T+  L  L+  T+   ++    HPA R+FQALRI VN E
Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +  +   L     AL  GG  + +++ SLED+++KK+FA  +         I    + A 
Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPIELPEYAAK 297

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328
           F+ +T+     T  ++A N R+   ++RA  +    +   ++  
Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLATSTNRKETSK 341


>gi|269215884|ref|ZP_06159738.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122]
 gi|269130834|gb|EEZ61910.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122]
          Length = 318

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +  L   P  + +DAT G  G+S            +I +D+D  A++   E
Sbjct: 7   HTPVLLAECLEGLALKPRHIFVDATLGGAGHSCEAAGRLGADGLLIGIDQDDAALAAAGE 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129
            +       + +  L +  F  L + +    V G+   +FDLGVSS Q+D   RGFSF++
Sbjct: 67  RLRALPEKKRPRIKLLKGNFGDLDELLVRAQVPGIDGILFDLGVSSPQLDVASRGFSFRE 126

Query: 130 SGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM     +  A+++VN A   +L RI+    +EK A RIA  IV  R+ AP +T
Sbjct: 127 DAPLDMRMDPGRQTRNAAELVNSATESELARIIFENSDEKWARRIAQFIVAAREDAPIET 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L  +I+  +  S +    HPA R+FQALRI VN+E++ L +GL +A + L   G + 
Sbjct: 187 TGQLVEIIKAAIPASARRRGGHPAKRTFQALRIEVNSELDALKRGLEAAVRWLNPQGRIA 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK  FA  S   +    +         V + +T+K ++P + ++  N R
Sbjct: 247 VISYHSLEDRIVKNLFADLSRTCICPPDLPVCVCGADPVLKVMTRKPLLPAEGEIEGNPR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   R
Sbjct: 307 ARSAKLRIACR 317


>gi|305681071|ref|ZP_07403878.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC
           14266]
 gi|305659276|gb|EFM48776.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC
           14266]
          Length = 341

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/344 (33%), Positives = 180/344 (52%), Gaps = 27/344 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--N 60
           M +  +H    HVPVL E+V  LL PA         +ILDAT GAGG+S  F       +
Sbjct: 1   MENTNNHG---HVPVLRERVTELLAPALCNTITNPPIILDATLGAGGHSEYFLTTFPQVH 57

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106
           +I LDRD  A++     + D+ ++ +     F      +                +G+ G
Sbjct: 58  IIGLDRDTTALAQAATRLADFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117

Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165
            +FDLGVSSMQ+D  +RGF+++   PLDMRM+   GI+A++++N     DLTRIL   G+
Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGDLTRILKTYGD 177

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNE 224
           E+ AS+IA AI++ R+ APF T+  L  L+  T+   ++    HPA R+FQALRI VN E
Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +  +   L     AL  GG  + +++ SLED+++KK+FA  +         +    + A 
Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPMELPEYAAK 297

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328
           F+ +T+     T  ++A N R+   ++RA  +    +   ++  
Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLATSTNRKETSK 341


>gi|148243357|ref|YP_001228514.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307]
 gi|262825772|sp|A5GWA2|RSMH_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147851667|emb|CAK29161.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307]
          Length = 299

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 164/319 (51%), Gaps = 32/319 (10%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALD 65
           MSS+ H     H PVL ++V+  L   P   V+LDAT G GG+S     +     +I LD
Sbjct: 1   MSSSFH-----HQPVLPQQVLEALAELPDEGVLLDATVGGGGHSSLLLDVHPGWQLIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A +   + +  + E+  L  + F+    Y PD+ V  V+ DLGVSS Q+D  +RGF
Sbjct: 56  QDPAARAAAAQQLERFGERVQLVASNFA---AYTPDQPVVAVLADLGVSSHQLDVPERGF 112

Query: 126 SFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SF+  GPLDMRM+  G   +A+ ++++     L  +L   GEE+ + RIA  +       
Sbjct: 113 SFRADGPLDMRMNTEGDGETAAALIDRLEENALADLLFHYGEERLSRRIARRLKTEGPWD 172

Query: 184 PFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             +  T     ++        ++ RIH ATRSFQALRI VN+E+  L   L  A   L+ 
Sbjct: 173 DGERGTAALAYAIAGCYPPKQRHGRIHAATRSFQALRIAVNDELGVLETLLNDAPNWLEP 232

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+SFHSLEDRLVK  F +                     + I++K ++ ++++  
Sbjct: 233 GGRIAVISFHSLEDRLVKNRFKADE-----------------RLRVISRKPLIASEQEAE 275

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N R+RSAKLR   R    
Sbjct: 276 ANPRARSAKLRVAERLSAE 294


>gi|312373365|gb|EFR21121.1| hypothetical protein AND_17511 [Anopheles darlingi]
          Length = 384

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 48/355 (13%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           ++        H PV+  + +  L P   +  +D TFGAGG+SR+      G+ +IALDRD
Sbjct: 28  TADPASRTTPHRPVMAGETVRFLEPQNNQTFIDMTFGAGGHSRALLGAAPGATIIALDRD 87

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQD--------YVPDKGVDGVVFDLGVSSMQID 119
           P A     E   +Y  +      +FS+L          Y   + +DG++FD G SSMQ D
Sbjct: 88  PHAHRLACEMATEYPGRILPVLGSFSELPSLLRTLPEGYGRQRFIDGIIFDFGCSSMQFD 147

Query: 120 CGDRGFSFQKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
              RGFS    GPLDMRM         SA++V+ +   +DL RIL + GEEKQA +IA A
Sbjct: 148 EAARGFSIAHDGPLDMRMDKDRCPEQLSAAEVLARVQEQDLARILKVYGEEKQAKKIARA 207

Query: 176 IVK-RRQSAPFQTTQDLSSLIQKTVYFSK--------------------NNRIHPATRSF 214
           IV  R      +TT +L+S++   +  ++                        H AT++F
Sbjct: 208 IVNARFTVKRIETTAELASIVAHCLSSNQATETGPVSSASSFEYRQDKLRRPAHVATKTF 267

Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274
           QALRIFVNNE+ E+  G+  A+  L+ GG L+ ++FHSLED +VK+         +A R 
Sbjct: 268 QALRIFVNNELNEINYGMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRV 327

Query: 275 MI-------------PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +                     ++ +TK VVVP++ +V  N RSRSAKLRA +R
Sbjct: 328 PLQFISHTLAHENDTMQEMMKPNWRQLTKHVVVPSEAEVTANPRSRSAKLRAAVR 382


>gi|298491041|ref|YP_003721218.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708]
 gi|298232959|gb|ADI64095.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708]
          Length = 301

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 161/309 (52%), Gaps = 24/309 (7%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           ++     HVPVL ++VI  L  +P    LD T G GG+SR   +      V A+D+D  A
Sbjct: 11  LNEIAFSHVPVLSQQVIGGLVVSPRGNYLDLTVGGGGHSRLILETAEDVKVTAVDQDEDA 70

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   +  + ++ ++ +   + F+      P     G++ DLGVSS  +D  +RGFSF+ +
Sbjct: 71  LKAAKANLAEFGDRVNFIHSNFANYD--FPPNTYHGILADLGVSSYHLDNPERGFSFRNT 128

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+     +A D++N  +  +L  I    GEE+ + RIA  IV++R      TT+
Sbjct: 129 ANLDMRMNQQQFLTAGDIINNWDEGELADIFFKYGEERLSRRIARRIVEKRPFH--TTTE 186

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             + +        +  R+HPATR FQALRI VN+E++ L   +  A  +L  GG + ++S
Sbjct: 187 LANVIAYSVPPKYRYGRLHPATRVFQALRIVVNDELKVLETLIDKAPHSLVPGGRIAIIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK    + S                 + Q +TKK ++ T+ ++  N RSRSA
Sbjct: 247 FHSLEDRLVKHGLRNLS-----------------LLQVLTKKPILGTESEITENLRSRSA 289

Query: 310 KLRAGMRTV 318
           KLR   +  
Sbjct: 290 KLRIAEKKN 298


>gi|86160181|ref|YP_466966.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123496850|sp|Q2IG17|RSMH_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85776692|gb|ABC83529.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 310

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 31/315 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDR 66
           H PVL  +V+ LL P PG++ LD                          + G+ VIALD+
Sbjct: 7   HEPVLANEVLELLRPRPGELFLDGTLGGGGHSGLLL-------------EAGARVIALDK 53

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123
           DP A++     +  + E F   ++ F   ++ +       VDG + DLGVSS Q+D  +R
Sbjct: 54  DPRALAAATARLARFGEAFRAVRSDFRDAKNVLEALGIGAVDGALVDLGVSSPQLDEAER 113

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF + GPLDMRM  +G +  D++ + + ++L RIL   GEE  A  +A AI    ++ 
Sbjct: 114 GFSFSRPGPLDMRMGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAIKAALEAE 173

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T  L+ ++   +      +RIHPATR+FQALRI VN+E+  LA  L      L  G
Sbjct: 174 APLDTARLAEVVAGAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPG 233

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G    +SFHSLEDR+VK+ F + +        +   +    A F +IT+K V  + +++A
Sbjct: 234 GRAAAISFHSLEDRMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDDEIA 293

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RSA+LRA  +
Sbjct: 294 RNPRARSARLRAVEK 308


>gi|296113990|ref|YP_003627928.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4]
 gi|295921684|gb|ADG62035.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4]
          Length = 333

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 174/329 (52%), Gaps = 25/329 (7%)

Query: 8   TMSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKM 57
           TMS+ I  +    H  VLL + +A+      LN        V +DATFG GG+S+   + 
Sbjct: 3   TMSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEY 62

Query: 58  GS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDL 111
            +    +   D+DP A++  +  +     +  +   +F+ L      +    +DG++ DL
Sbjct: 63  LAPEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADL 121

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS Q+D G RGFSF + G +DMRM    G   S+ + + +  +L  +L   GEE+ + 
Sbjct: 122 GVSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSR 181

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++  
Sbjct: 182 KIARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEA 237

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSIT 289
            L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F    
Sbjct: 238 FLAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPK 297

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           +  + P  ++V  N R+RSA LR  +R+ 
Sbjct: 298 R--IGPCDQEVKANPRARSAWLRGAVRSD 324


>gi|327399188|ref|YP_004340057.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima
           DSM 10411]
 gi|327181817|gb|AEA33998.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima
           DSM 10411]
          Length = 297

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 26/306 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H  VLL++ I  L P  G + +D T GA G++    K+      VIA D+D  A+   Q
Sbjct: 2   KHKSVLLKETITTLQPRNGGIYIDMTLGAAGHTEKLLKLSSPSGIVIAFDKDQDAIKHAQ 61

Query: 76  ETMRD-YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E +++ Y ++  L    ++ +++++       VDGV+ DLGVS  Q+   DRGFSF    
Sbjct: 62  EKLKETYGDRLILINDDYANIKEHLRRLEIDEVDGVIMDLGVSLDQLKS-DRGFSFNIDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   +A  +VN  ++++L RI+ + GEE  A RIA AI    ++ P  TT++
Sbjct: 121 PLDMRMDKNKPLTAEKIVNHWDMEELERIIRLYGEENFARRIAKAI---VKNRPIHTTKE 177

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ TV  S + RIHPATR+FQALRI VN+E+E L +GL+ A +ALK  G++  +SF
Sbjct: 178 LAELIELTVPRSVSRRIHPATRTFQALRIVVNDELESLQKGLKGAIEALKENGIICAISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK                        V + + KK + PT ++V  N+ SRSAK
Sbjct: 238 HSLEDRIVKNILRDY--------------KQKGVLRLLNKKPIRPTPQEVKSNKHSRSAK 283

Query: 311 LRAGMR 316
           LR  ++
Sbjct: 284 LRCALK 289


>gi|332531941|ref|ZP_08407825.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038568|gb|EGI75011.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 285

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 111/285 (38%), Positives = 165/285 (57%), Gaps = 13/285 (4%)

Query: 42  DATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           D TFG GG+S            + A+D+DP A+   ++       +F++    FS L + 
Sbjct: 2   DGTFGRGGHSGQILARLGDEGRLQAIDQDPQAIQSAEKF--ADDPRFAIAHTRFSNLYEV 59

Query: 99  VPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
                    VDG++ D+GVSS Q+D  +RGFSF K GPLDMRM  + G SA+  + +A +
Sbjct: 60  AQQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGPLDMRMDPTTGRSAAQWLAEAEL 119

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
            D+T ++  LGEEK   RIAH +++ R+  P  TT+ L+ L+ + V   K+   HPATR+
Sbjct: 120 DDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQLADLVDEAVPV-KDKFKHPATRT 178

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQA+RI++N+E+EE+   L+SA K LK GG L+V+SFHSLEDR+VK+F   +S      R
Sbjct: 179 FQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISFHSLEDRIVKQFIRKQSKGEALPR 238

Query: 274 HMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +  ++A     +      K + P+  +V  N RSRS+ LR   R
Sbjct: 239 GLPLTDAQINKNLTLKAVGKAIKPSAAEVERNPRSRSSVLRIAQR 283


>gi|254415023|ref|ZP_05028786.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC
           7420]
 gi|196178170|gb|EDX73171.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC
           7420]
          Length = 291

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 153/318 (48%), Gaps = 38/318 (11%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M          H  VL +++IA L   PG   LDAT G GG+S        +V       
Sbjct: 1   MEFDAQTAQFFHRSVLSQELIAGLAIRPGGHYLDATVGGGGHSELILSAAPDVR------ 54

Query: 69  FA---------VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
                      ++  Q  +  Y ++   ++  F   Q   P+   DG++ DLGVSS Q+D
Sbjct: 55  -VTAIDQDAQAIAAAQTRLASYGDRIQFWRGNFVDYQ--PPESLFDGIIADLGVSSAQLD 111

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             DRGFSF+   PLDMRM     ++A+ ++N  +   L   +   GEE+ + RIA AIV+
Sbjct: 112 IPDRGFSFRHQAPLDMRMDQRQSLTAAQIINHWDETQLANTIYEYGEERLSRRIARAIVE 171

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RR      TTQ   ++ +      +  RIHPATR+FQALRI VN E+  L + L  A + 
Sbjct: 172 RRPFE--TTTQLAEAIARSVPKKYRYGRIHPATRTFQALRIAVNQELSSLEKFLNCAPRW 229

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK GG + ++SFHSLEDRLVK                        + + +TKK + P   
Sbjct: 230 LKPGGRIGIISFHSLEDRLVKHHLRDS-----------------PILRVLTKKPITPQPT 272

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RSAKLR   R
Sbjct: 273 ERDENPRARSAKLRLAER 290


>gi|297243796|ref|ZP_06927726.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis AMD]
 gi|296888217|gb|EFH26959.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis AMD]
          Length = 345

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 11/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63
           M+  +      H PVLL+  + L+ P     G +++D T G  G++ +F K      +I 
Sbjct: 1   MTDVMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60

Query: 64  LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118
           +DRD  A+S   + MR      +F    A F ++ + + +  +DG+     DLG+SS+QI
Sbjct: 61  IDRDAEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLRENRIDGIDAAFMDLGLSSLQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGFS+     LDMRM  +  + +  +    + + LTRI    GEE+ AS IA  IV
Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRGLTRIFREYGEERFASLIARRIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R + P  T+  L SL+   +  +     +PA R FQALRI VN E+++L+  L     
Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSCTLPKIAL 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L+  G L+V S+HSLED  VK+F        +     +  +     F+++T+  +  ++
Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300

Query: 298 EDVAFNRRSRSAKLRAGM 315
           E++  N RS S +LRA  
Sbjct: 301 EEIVHNTRSSSVRLRAVE 318


>gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa]
 gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa]
          Length = 435

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 160/348 (45%), Gaps = 45/348 (12%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71
           H    HVPV+L +V+ + +  P +  +D T GA G+S +  K    +   I +D DP A 
Sbjct: 87  HETESHVPVMLGEVVDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAH 146

Query: 72  SCGQE----TMRDYKEQFSLF--QATFSQLQDYVPDKGVDG---------VVFDLGVSSM 116
           +  +      ++  +           F  ++  V +   D          ++ DLG+SSM
Sbjct: 147 AKARAHIDALLQSTRSSLKPHLLFKNFKYIKSVVGEIDDDCKLLSSGVDGILMDLGMSSM 206

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q++   RGFS   +GPLDMRM     + A D++N     ++ RIL   GEE     +   
Sbjct: 207 QVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKK 266

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGL 232
           IV+ RQ     +T +L  LIQ   + +K      I  ATR FQALRI VN+E+  L + L
Sbjct: 267 IVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTATRVFQALRIAVNDELNTLEKSL 326

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ------ 286
            +  + L  GG L V+SFHSLEDR+VK+ F            ++   A     +      
Sbjct: 327 HACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDI 386

Query: 287 -----------------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                             +TK+ + P++E+   NRRSRSAKLR   + 
Sbjct: 387 DAKETWIRQMVQGQNGTILTKRPITPSEEEERLNRRSRSAKLRVIEKI 434


>gi|293977957|ref|YP_003543387.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN]
 gi|292667888|gb|ADE35523.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN]
          Length = 300

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 11/302 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVLL+++++ L      + +D TFG GG+S S          VIA D+D  ++    
Sbjct: 4   YHIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKN-N 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +               +         V G++ DLG+SS QI+   RGFS + +  LDM
Sbjct: 63  NILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSILDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM     I+A  ++N  +  +L  +L   GE K A  I+  I+K R+    ++T DL  +
Sbjct: 123 RMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLIKI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
               + F    +    ++ FQ+LRI VN+EI  L   L+++   LK GG + V+S+HS+E
Sbjct: 183 ----LNFFYKKKNKYLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHSIE 238

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VKKF  + +   +       +N  P     +  +++  ++E+   N RSRSA LR  
Sbjct: 239 DRIVKKFLKTGNFNGIIPYDEYGNNLSP--LILLEPRIIFSSKEEKKENNRSRSAILRIA 296

Query: 315 MR 316
            +
Sbjct: 297 EK 298


>gi|94502345|ref|ZP_01308815.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|161833845|ref|YP_001598041.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS]
 gi|259495905|sp|A8Z694|RSMH_SULMW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94451100|gb|EAT14055.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|152206335|gb|ABS30645.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS]
          Length = 300

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 11/302 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVLL+++++ L      + +D TFG GG+S S          VIA D+D  ++    
Sbjct: 4   YHIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKN-N 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +               +         V G++ DLG+SS QI+   RGFS + +  LDM
Sbjct: 63  NILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSILDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM     I+A  ++N  +  +L  +L   GE K A  I+  I+K R+    ++T DL  +
Sbjct: 123 RMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLIKI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
               + F    +    ++ FQ+LRI VN+EI  L   L+++   LK GG + V+S+HS+E
Sbjct: 183 ----LNFFYKKKNKFLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHSIE 238

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VKKF  + +   +       +N  P     +  +++  ++E+   N RSRSA LR  
Sbjct: 239 DRIVKKFLKTGNFNGIIPYDEYGNNLSP--LILLEPRIIFSSKEEKKENNRSRSAILRIA 296

Query: 315 MR 316
            +
Sbjct: 297 EK 298


>gi|325106882|ref|YP_004267950.1| ribosomal RNA small subunit methyltransferase H [Planctomyces
           brasiliensis DSM 5305]
 gi|324967150|gb|ADY57928.1| Ribosomal RNA small subunit methyltransferase H [Planctomyces
           brasiliensis DSM 5305]
          Length = 307

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 153/314 (48%), Gaps = 24/314 (7%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
                 H PVLL + I  +   PG  ++D T GA G+S    K    G  +I LDRDP  
Sbjct: 3   SPAPTQHRPVLLRETIQGMELKPGMTVIDGTVGAAGHSSEIWKRIQPGGRLIGLDRDPEM 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++     + D  +         + + +++  + VD ++ DLG+SS Q+    RGF F   
Sbjct: 63  LARSSCRLGDSADLIHASYLDANGVLEHLGVEKVDRLLVDLGLSSDQLADDQRGFGFATE 122

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           G LDMR     G      +N+A+V ++T++L   GEE QA++IA  +V  R+S P  +  
Sbjct: 123 GQLDMRFDMTQGKPVHHWLNKADVAEITKVLSEYGEEPQAAQIAAKVVDARRSQPITSVA 182

Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL-LI 246
            L  +I+K          + HPATR+FQALRIF N E+E L + L      +   G  L 
Sbjct: 183 ALREIIEKVAGGRGRAAGKSHPATRTFQALRIFANAELEHLQRFLTITAPYVLKPGGLLA 242

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++FHSLEDRL K+  A R     +                  KK + PT  ++  N RS
Sbjct: 243 VITFHSLEDRLTKQALADREVWADSS-----------------KKPIGPTPLEIKMNPRS 285

Query: 307 RSAKLRAGMRTVER 320
           RSAKLR G+R    
Sbjct: 286 RSAKLRIGIRAEAE 299


>gi|197124208|ref|YP_002136159.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K]
 gi|263446708|sp|B4UER3|RSMH_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|196174057|gb|ACG75030.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K]
          Length = 310

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 31/315 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDR 66
           H PVL  +++ LL P PG++ LD                          + G+ VIALD+
Sbjct: 7   HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLL-------------EAGARVIALDK 53

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123
           DP A++     +  + E F   ++ F   ++ +       VDG + DLGVSS Q+D  +R
Sbjct: 54  DPRALAAATARLARFGEAFRAVRSDFRDAKNVLQALGIAAVDGALVDLGVSSPQLDEAER 113

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF + GPLDMRM  +G +  D++ + + ++L RIL   GEE  A  +A A+    ++ 
Sbjct: 114 GFSFSRPGPLDMRMGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETE 173

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T  L+ ++   +      +RIHPATR+FQALRI VN+E+  LA  L      L  G
Sbjct: 174 APLDTARLAEVVAGAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPG 233

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G    +SFHSLEDR+VK+ F + +        +   +    A F +IT+K V  + E++A
Sbjct: 234 GRAAAISFHSLEDRMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIA 293

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RSA+LRA  +
Sbjct: 294 RNPRARSARLRAVEK 308


>gi|326567260|gb|EGE17380.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 12P80B1]
 gi|326572872|gb|EGE22857.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis CO72]
          Length = 330

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 173/328 (52%), Gaps = 25/328 (7%)

Query: 9   MSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58
           MS+ I  +    H  VLL + +A+      LN        V +DATFG GG+S+   +  
Sbjct: 1   MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60

Query: 59  S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLG 112
           +    +   D+DP A++  +  +     +  +   +F+ L      +    +DG++ DLG
Sbjct: 61  APEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D G RGFSF + G +DMRM    G   S+ + + +  +L  +L   GEE+ + +
Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   
Sbjct: 180 IARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290
           L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F    +
Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPKR 295

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
             + P  ++V  N R+RSA LR  +R+ 
Sbjct: 296 --IGPCDQEVKANPRARSAWLRGAVRSD 321


>gi|284991692|ref|YP_003410246.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM
           43160]
 gi|284064937|gb|ADB75875.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM
           43160]
          Length = 330

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 116/301 (38%), Positives = 172/301 (57%), Gaps = 12/301 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPVLL++V  LL PA    G V++DAT G  G+S +  +      ++ LDRDP A +  
Sbjct: 17  HVPVLLDRVTELLAPACAADGAVLVDATLGLAGHSLALLRAHPGLRLVGLDRDPDARAEA 76

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + D    ++ ++  A F +L   +       V  V+FDLGVSS+Q+D  DRGFS+  
Sbjct: 77  TRRLTDAGVADRATVVPAVFDELPGVLDRLGLTEVQAVLFDLGVSSLQLDRPDRGFSYAA 136

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S   +A+DVVN      L R+L + GEE+ A+RIA AI + R+ APF  T
Sbjct: 137 DAPLDMRMDPSAPRTAADVVNTYPTDRLARVLRVYGEERFATRIAQAITRERERAPFTHT 196

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           + L+ L++ ++   ++    HPA R+FQALRI VN+E+  L + L +A  AL  GG + V
Sbjct: 197 ERLAHLVRASIPAATRRTGGHPAKRTFQALRIEVNDELGVLERALPAALDALTVGGRIAV 256

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+VK+  A+ +         +P        + +T+    P++ +VA N RS 
Sbjct: 257 ITFHSLEDRIVKQTLAAGAVDRTPPGLPVPLPEMGPTLRLLTRGGEAPSEAEVAANPRSA 316

Query: 308 S 308
           S
Sbjct: 317 S 317


>gi|146328861|ref|YP_001209878.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A]
 gi|167011832|sp|A5EY11|RSMH_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146232331|gb|ABQ13309.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A]
          Length = 308

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H+PVLL + +A L  AP    LDATFG GG+S            + ALDRD     
Sbjct: 2   ETSEHIPVLLAEAVAALEIAPNGRYLDATFGRGGHSSEILAQLGESGQLYALDRDQ---Q 58

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +    +F   +  FS+++        + +DG++FDLGVSS Q+D   RGFSF K
Sbjct: 59  AAAVAAQITDPRFHFARCAFSEMETAFAALGAESLDGILFDLGVSSPQLDDPSRGFSFAK 118

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM      +A   +   +   LT ++   G E     +A  I K   +A     
Sbjct: 119 EGPLDMRMDNEQNLTAQKWLKNVDEDTLTTVIRDYGGEPHT--VAKRIAKAILAAKNDLK 176

Query: 189 QDLSSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             L           K       HPAT++FQA+RI VN+EI E+ + LR+A   LK+GG+L
Sbjct: 177 STLDLASVVAQARPKKLYKPHLHPATQTFQAIRIAVNDEIGEIQRALRAATMMLKSGGIL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFH LED  VK+F  S  G+ +       +  +      +   V+ P+  ++A N R
Sbjct: 237 VVISFHGLEDATVKRFVRSMEGEPLPAEIPATNTTNIHQVLRLVPPVIKPSSAEIAQNPR 296

Query: 306 SRSAKLRAGMR 316
           SRSAKLR  ++
Sbjct: 297 SRSAKLRKAVK 307


>gi|42524595|ref|NP_969975.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|110826013|sp|P62469|RSMH_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39576805|emb|CAE78034.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 328

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 26/310 (8%)

Query: 17  IGDHVPVLLEKVIAL---LNPAPGKVILDATFGAGGYSRSFCKMGSNVIA--LDRDPFAV 71
             +H PVLL++V+A    L         D TFG GG+  +       + A  +D+D  A+
Sbjct: 30  SPEHYPVLLQEVLAAFYPLRDKKELSYFDGTFGRGGHYMALKYAYPQMKATVMDQDLAAI 89

Query: 72  SCGQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  Q        K Q ++    F+Q  ++  +   D ++ DLGVSS Q+D G+RGFSF  
Sbjct: 90  AFAQSRFQTEVEKGQLNVIHGNFTQFSEHNLN-NFDMMLLDLGVSSPQLDQGERGFSFYN 148

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM    G++A  ++N A+  +L RI    GE  + SR+  AIV  R++  FQTT
Sbjct: 149 DGPLDMRMNQQQGLTAEVLINTASEDELIRIFKEYGEVYRPSRVVRAIVNDRKTKAFQTT 208

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI++ V   +    HPAT+ F ALR+ VN+E+E +A+ +    +AL  GG L V+
Sbjct: 209 GALAGLIER-VDGWQVKGHHPATKYFMALRLAVNSELEVVAEAIPKMIRALNPGGRLAVI 267

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK  F                     + +++TKKV+VPTQE+   N RSRS
Sbjct: 268 SFHSLEDRIVKNIFRESED----------------LGRTVTKKVIVPTQEECDRNSRSRS 311

Query: 309 AKLRAGMRTV 318
           AKLR   R+ 
Sbjct: 312 AKLRIFERSA 321


>gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis]
 gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis]
          Length = 364

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 122/333 (36%), Positives = 172/333 (51%), Gaps = 31/333 (9%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
              HVPVL +  I  L P      +D TFGAGG++R        + V ALDRDP A    
Sbjct: 32  SAPHVPVLCQTAIDYLQPVASGKYIDMTFGAGGHTRRLLDSCPDTTVYALDRDPLAHELA 91

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           Q   +  DY  +       FS+L   +          DG++FD G SSMQ D   RGFS 
Sbjct: 92  QRMSQENDYAGRLVPLLGKFSELPQLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFSI 151

Query: 128 QKSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSA 183
             +GPLDMRM C     ISA+DV+ +A   DL RIL + GEEK A +IA AIV+ R    
Sbjct: 152 AHNGPLDMRMDCGRSGSISAADVLARAEEADLARILRVYGEEKAAKKIARAIVEARSALQ 211

Query: 184 PFQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             +TT+ L+ L+   +   +         H AT++FQALRIFVNNE+ E+  G+  A++ 
Sbjct: 212 RIETTRQLADLVAAVLGDGQRLDRLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQEL 271

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVF 285
           L+A G L+ ++FHSLED +VK+       + +A    +    H              + +
Sbjct: 272 LRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSNW 331

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           + + + V+ P   ++A N RSRSAKLRA ++  
Sbjct: 332 RQLHRHVIQPDATEIARNSRSRSAKLRAAIKIK 364


>gi|328952338|ref|YP_004369672.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452662|gb|AEB08491.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca
           acetoxidans DSM 11109]
          Length = 303

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 165/314 (52%), Gaps = 25/314 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           ++++V+A L   PG + +D T G GG++ +          V+ LD+D  A+      +  
Sbjct: 1   MVQEVLAELQCQPGHIYVDGTVGLGGHAEAILLRSSPTGQVVGLDQDSAALQIAALRLLP 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y  +  L  + ++QL + +  + ++    ++ DLG+S+ Q+    RGFSF+   PLDMRM
Sbjct: 61  YGPRVYLIHSCYTQLAEILQQRRIESVDGILLDLGISTEQLKSSGRGFSFKGKEPLDMRM 120

Query: 138 SC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           +      +A+D++N      L+R+   LGEE+ A RIA  IV+ RQ AP  TT  L  +I
Sbjct: 121 NPDVQTTTAADLLNTEPEAQLSRMFWELGEERWARRIARNIVRARQQAPLITTNQLVEVI 180

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            +++       RIHPATR FQALRI VN E+E+++  +  A K L  GG L+++ +HSLE
Sbjct: 181 LRSLPPKTGMKRIHPATRVFQALRIAVNQELEKISAFIPQAIKVLAPGGRLVIIDYHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+ F          R                KK ++P + +VA N  +RSAK+R  
Sbjct: 241 DRIVKRAFIEAERAGSVRRRY--------------KKPLIPGEAEVASNPSARSAKMRTV 286

Query: 315 MRTVERSIEDDSFV 328
            +    +  D +  
Sbjct: 287 EKL--PASPDKNLK 298


>gi|194476804|ref|YP_002048983.1| methyltransferase [Paulinella chromatophora]
 gi|171191811|gb|ACB42773.1| methyltransferase [Paulinella chromatophora]
          Length = 283

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 150/301 (49%), Gaps = 26/301 (8%)

Query: 22  PVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETM 78
           PVL  +V+      P   VILD T G GG+S         +  I LD+DP A     + +
Sbjct: 2   PVLASQVVQAFASLPPYGVILDCTVGGGGHSSLLLNNHPKLRIIGLDQDPDAWLKANQYL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             ++ +  L +  F+          + GV+ DLGVSS Q++   RGFSF+  GPLDMRM+
Sbjct: 62  ASFRYRTRLIKTNFADFVPVE---PLSGVLVDLGVSSHQLEVAQRGFSFRFEGPLDMRMN 118

Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G +A+++VN    K+L  ++   GE++ + RIA  IV+  +     T      +   
Sbjct: 119 PSKGETAAELVNYLGEKELADLIFSYGEDRFSRRIARRIVQ--KRPFNSTKDLAYVIAGC 176

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
               S+  RIHPATR+FQALRI VNNE+E L   L      L  GG++ ++SFHSLEDR 
Sbjct: 177 YSPKSRRGRIHPATRTFQALRIAVNNEMEVLDHLLSRIPDWLIPGGIVAIISFHSLEDRR 236

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+ F                       + IT K +V  + +   N RSRSAKLR   RT
Sbjct: 237 VKQAF-----------------LTDERLERITNKPLVADENERNDNSRSRSAKLRIAKRT 279

Query: 318 V 318
            
Sbjct: 280 D 280


>gi|220918988|ref|YP_002494292.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|263446697|sp|B8J8E0|RSMH_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219956842|gb|ACL67226.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 310

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 31/315 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDR 66
           H PVL  +++ LL P PG++ LD                          + G+ VIALD+
Sbjct: 7   HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLL-------------EAGARVIALDK 53

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123
           DP A++     +  + E F   ++ F   ++ +       VDG + DLGVSS Q+D  +R
Sbjct: 54  DPRALAAATARLARFGEAFRAVRSDFRDAKNVLEALGIAAVDGALVDLGVSSPQLDEAER 113

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF + GPLDMRM  +G +  D++ + + ++L RIL   GEE  A  +A A+    ++ 
Sbjct: 114 GFSFSRPGPLDMRMGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETE 173

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T  L+ ++   +      +RIHPATR+FQALRI VN+E+  LA  L      L  G
Sbjct: 174 APLDTARLAEVVAGAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPG 233

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G    +SFHSLEDR+VK+ F + +        +   +    A F +IT+K V  + E++A
Sbjct: 234 GRAAAISFHSLEDRMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIA 293

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RSA+LRA  +
Sbjct: 294 RNPRARSARLRAVEK 308


>gi|317968143|ref|ZP_07969533.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0205]
          Length = 292

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 158/307 (51%), Gaps = 32/307 (10%)

Query: 22  PVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           PVL  +V+A       LL    G +++D T G GG+S    +      ++ LD+DP A  
Sbjct: 2   PVLAAQVLASFTALEPLLQERGGGLLIDCTLGGGGHSALLLEAHPGLKLVGLDQDPTARQ 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E +  + ++ S+    F+   DY P +    V+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 62  AAAERLEPFGDRVSIVATNFA---DYQPQEPALAVMADLGVSSPQLDVAERGFSFRHDGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQSAPFQTTQ 189
           LDMRM+   G +A++++ +    +L  ++   GEE+ + RIA  I +    Q     T  
Sbjct: 119 LDMRMNPQAGETAAELIERLEETELADLIYAYGEERLSRRIARKIKQHLAEQGPFAGTDA 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
               +       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L+ GGL+ V+S
Sbjct: 179 LAYLVAGCYAPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLMGVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK  F+S                     Q +T+K     +E+ + N RSRSA
Sbjct: 239 FHSLEDRRVKTAFSSDE-----------------RLQRVTRKPETAGEEEQSSNPRSRSA 281

Query: 310 KLRAGMR 316
           K R   R
Sbjct: 282 KWRVARR 288


>gi|195941340|ref|ZP_03086722.1| hypothetical protein Bbur8_00460 [Borrelia burgdorferi 80a]
 gi|224533199|ref|ZP_03673799.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23]
 gi|224511926|gb|EEF82327.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23]
 gi|312148089|gb|ADQ30748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi JD1]
          Length = 296

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|296269378|ref|YP_003652010.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833]
 gi|296092165|gb|ADG88117.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833]
          Length = 327

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 117/298 (39%), Positives = 173/298 (58%), Gaps = 10/298 (3%)

Query: 17  IGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           +  HVPV+L +V+ LL PA   P  V++DA  G GG++ +  K     ++I +DRDP A+
Sbjct: 14  VNGHVPVMLGRVLELLAPALTGPDPVLVDANVGLGGHAEALLKAHPALHLIGIDRDPTAI 73

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  Y E+ +L  A   +L           ++G +FDLG+SS QID   RGF++ 
Sbjct: 74  ERSTARLAPYAERVTLVHAVSDELPTILSRAGRPRINGALFDLGLSSPQIDEAARGFAYS 133

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM      +A+DVVN  +V +LTRIL   GEE+ A+RIA+AI + R  +P  T
Sbjct: 134 YDAPLDMRMDPGQELTAADVVNGYSVAELTRILREYGEERFAARIANAIARERARSPITT 193

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+ L+ L++  +   ++    +PA R+FQALRI VN E+  L + L +A  AL  GG ++
Sbjct: 194 TKRLADLVRDAIPAATRRTGGNPAKRTFQALRIEVNQELAALERALPAALDALAVGGRVV 253

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+++HSLEDRLVK+  A RS +       +P  AH   F+ +TK   +P  E+VA N 
Sbjct: 254 VLAYHSLEDRLVKRVLAERSTESGPPGLPVPLEAHLPTFRLLTKGAELPDDEEVARNP 311


>gi|226320608|ref|ZP_03796168.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805]
 gi|226234027|gb|EEH32748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805]
          Length = 296

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEYYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|183983192|ref|YP_001851483.1| methyltransferase [Mycobacterium marinum M]
 gi|262825131|sp|B2HGS5|RSMH_MYCMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183176518|gb|ACC41628.1| methyltransferase [Mycobacterium marinum M]
          Length = 345

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 18/317 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVL ++ + LL PA           V++DAT GAGG++  F        +I LDRDP 
Sbjct: 15  HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L        Y   + +DG +FDLGVSSMQ+D  +R
Sbjct: 75  ALEIVRTRLARFADRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ K  PLDMRM+     SA+D++N  +   L  IL   GEE+ A RIA  I++RR  
Sbjct: 135 GFAYSKDAPLDMRMNPQSALSAADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L +L+ + +  + +    HPA R+FQALRI VN+E+  L   + +A  AL  
Sbjct: 195 KPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAIPAAMDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA        +   +    H   F+S+T         +V 
Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPMDLPVELPGHGPRFRSLTHGAERADAAEVE 314

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RS   +LRA  R  
Sbjct: 315 RNPRSAPVRLRALERLE 331


>gi|72383375|ref|YP_292730.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str.
           NATL2A]
 gi|88909209|sp|Q46HK1|RSMH_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72003225|gb|AAZ59027.1| bacterial methyltransferase [Prochlorococcus marinus str. NATL2A]
          Length = 304

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/314 (32%), Positives = 158/314 (50%), Gaps = 31/314 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66
             +  +H+PV+ +++I  L   P       +I+DAT G GG+S    +      +I LD+
Sbjct: 8   SSSNFNHIPVMGKEIIRSLKELPSELTKKGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A+    + +  +  +  +    F+   D+   +    V+ DLGVSS Q+D   RGFS
Sbjct: 68  DPMAIKAASKKLIKFGTRIEIISTNFA---DFSHHEQAICVLADLGVSSHQLDEPSRGFS 124

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+ +GP+DMRM+   G SA++++   + ++L  ++  LGEEK++ RIA  I         
Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184

Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T     ++        +  RIHP+TR+FQALRI VNNE+  L   L  A   L   G
Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L +V+SFHSLEDR VK  F +                     + ++KK +  + E++  N
Sbjct: 245 LFMVMSFHSLEDRRVKSSFKT-----------------DNRLKVLSKKPIRASPEEIELN 287

Query: 304 RRSRSAKLRA-GMR 316
            RS+SAKLR    +
Sbjct: 288 PRSKSAKLRISAKK 301


>gi|85714965|ref|ZP_01045950.1| methyltransferase [Nitrobacter sp. Nb-311A]
 gi|85698162|gb|EAQ36034.1| methyltransferase [Nitrobacter sp. Nb-311A]
          Length = 419

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/298 (44%), Positives = 180/298 (60%), Gaps = 5/298 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPF 69
           + +      HVPVL  + +A+L    G V +DATFGAGGYSR+      + VI +DRDP 
Sbjct: 86  AIMTEPPVRHVPVLGGEAVAMLALRAGGVYVDATFGAGGYSRAILATADTRVIGIDRDPA 145

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++ G   + +   + +L +  FS L           VDGVV D+GVSSMQ+D  DRGFS
Sbjct: 146 AIAGGSALVEESGGRLTLVEDRFSNLASVCAAQDVAVVDGVVMDVGVSSMQLDEADRGFS 205

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  GPLDMRMS  G +A+DVV  A+  DL  I+ I GEE+++  +A AIV  R+  P  
Sbjct: 206 FRLDGPLDMRMSGHGPTAADVVAHASETDLADIIYIFGEERRSRAVARAIVAARRHGPIA 265

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT+ L+ ++ K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ LK GG L 
Sbjct: 266 TTRALADVVSKVV-RAKPHEIHPATRTFQALRIFVNEELDELVAALAAAERVLKPGGRLA 324

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           VVSFHSLEDR+VK F A R  +    RH          F  +TK+ + P +E++  N 
Sbjct: 325 VVSFHSLEDRIVKNFLARRGKRGGGSRHRPEIEQGSPSFAILTKRPLTPGEEEMHANP 382


>gi|167966821|ref|ZP_02549098.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Ra]
 gi|215411891|ref|ZP_03420665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427543|ref|ZP_03425462.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T92]
 gi|215446396|ref|ZP_03433148.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
          Length = 331

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/318 (35%), Positives = 170/318 (53%), Gaps = 18/318 (5%)

Query: 22  PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           PVL ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP A+
Sbjct: 2   PVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGF 125
              +  +  + ++ +L    +  L   + + G       DG++FDLGVSSMQ+D  +RGF
Sbjct: 62  DVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++    PLDMRM  +   +A+D+VN  +   L  IL   GEE+ A RIA  IV+RR   P
Sbjct: 122 AYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTP 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F +T +L +L+ + +    +    HPA R+FQALRI VN+E+E L   + +A  AL  GG
Sbjct: 182 FTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++  N
Sbjct: 242 RIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERN 301

Query: 304 RRSRSAKLRAGMRTVERS 321
            RS   +LRA  R   R+
Sbjct: 302 PRSTPVRLRALQRVEHRA 319


>gi|216264839|ref|ZP_03436831.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a]
 gi|218249331|ref|YP_002374829.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7]
 gi|221217744|ref|ZP_03589212.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a]
 gi|224533715|ref|ZP_03674303.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a]
 gi|225550125|ref|ZP_03771085.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a]
 gi|226321624|ref|ZP_03797150.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26]
 gi|226709919|sp|B7J1N4|RSMH_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|215981312|gb|EEC22119.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a]
 gi|218164519|gb|ACK74580.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7]
 gi|221192421|gb|EEE18640.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a]
 gi|224513008|gb|EEF83371.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a]
 gi|225369237|gb|EEG98690.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a]
 gi|226232813|gb|EEH31566.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26]
          Length = 296

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|226226826|ref|YP_002760932.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|263447553|sp|C1A8A2|RSMH_GEMAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226090017|dbj|BAH38462.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 315

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 171/309 (55%), Gaps = 11/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   HVPVLL ++  +L  A    +LD T G GG++ +F + G  V  +DRDP A++  +
Sbjct: 12  TGTYHVPVLLSEIETMLANAT--TVLDCTLGGGGHTAAFLERGVRVTGVDRDPRALAAAR 69

Query: 76  ETMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E + +Y+   QF    A ++ L++  +  D   DG++ DLGVSS Q D   RGF+F++  
Sbjct: 70  ERLGEYERSGQFRAVLANYAALEEAGFSTDDRFDGILLDLGVSSHQFDDASRGFTFREGA 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     + A +++N  +  DL+ +L    +E +A+R+A  IV+RR+  PF T  D
Sbjct: 130 PLDMRMGTDADLDAGELLNTIDEVDLSALLRAYADEPRAARMAREIVRRRERRPFATADD 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L   I+  +     +      R FQA+RI VN+E+  L + L +    L  GG+L ++S+
Sbjct: 190 LVDAIRAVLGP--RSGAPDFARIFQAVRIAVNDELSGLERALPALRDRLTPGGVLAIISY 247

Query: 251 HSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HS EDRLVK  F   S       R  + +     +  +IT+K V  T++++  N R+RSA
Sbjct: 248 HSGEDRLVKNAFRDWSASCVCPPRQFVCTCRGRPLGDTITRKPVSATEQEIDQNTRARSA 307

Query: 310 KLRAGMRTV 318
           +LR   R+ 
Sbjct: 308 RLR-AWRSA 315


>gi|124024959|ref|YP_001014075.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. NATL1A]
 gi|262824926|sp|A2C000|RSMH_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123960027|gb|ABM74810.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. NATL1A]
          Length = 304

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 31/314 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66
             +  +HVPV+ +++I  L   P       +I+DAT G GG+S    +      +I LD+
Sbjct: 8   SSSNFNHVPVMGKEIIQSLKELPSELTKQGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A     + +  +  +  +    F+   D+  D+    V+ DLGVSS Q+D   RGFS
Sbjct: 68  DPMAREAASKKLIKFGTRIKIISTNFA---DFSLDEQAICVLADLGVSSHQLDEPSRGFS 124

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+ +GP+DMRM+   G SA++++   + ++L  ++  LGEEK++ RIA  I         
Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184

Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T     ++        +  RIHP+TR+FQALRI VNNE+  L   L  A   L   G
Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L +V+SFHSLEDR VK  F +                     + ++KK +  + E++  N
Sbjct: 245 LFMVMSFHSLEDRRVKSSFKT-----------------DNRLKVLSKKPIRASPEEIELN 287

Query: 304 RRSRSAKLRA-GMR 316
            RS+SAKLR    +
Sbjct: 288 PRSKSAKLRISAKK 301


>gi|118782145|ref|XP_312082.3| AGAP002831-PA [Anopheles gambiae str. PEST]
 gi|116129429|gb|EAA07716.4| AGAP002831-PA [Anopheles gambiae str. PEST]
          Length = 384

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/339 (35%), Positives = 170/339 (50%), Gaps = 42/339 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  V+  + +    P   +V +D TFGAGG++R+  +   GS V+ALDRDP A     E 
Sbjct: 44  HRAVMATETVKFFEPQRDQVFIDMTFGAGGHTRALLEAAPGSTVVALDRDPLAHRLACEM 103

Query: 78  MRDYKEQFSLFQATFSQLQDY-------VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +  +       FS+L             +  DGV+FD G SSMQ D   RGFS    
Sbjct: 104 AAQFPGRIVPLLGRFSELPALLRTVEGLDRQRHFDGVLFDFGCSSMQFDEAARGFSISHD 163

Query: 131 GPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPF 185
           GPLDMRM         SA++V+ +    DL RIL + GEEKQA +IA AIV  R      
Sbjct: 164 GPLDMRMDRDRCPEQLSAAEVLARIQEPDLVRILKVYGEEKQAKKIARAIVNARFTVKRI 223

Query: 186 QTTQDLSSLIQKTVYFSK---------------NNRIHPATRSFQALRIFVNNEIEELAQ 230
           +TT +L++++   +   +                   H AT++FQALRIFVNNE+ E+  
Sbjct: 224 ETTAELANIVAHCLSQGESAGGQGTYDFRQDKLRRPAHVATKTFQALRIFVNNELNEINY 283

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-------------P 277
           G+  A+  L+ GG L+ ++FHSLED +VK+         +A R  +              
Sbjct: 284 GMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQYVSHTLAHETEAM 343

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  ++ + K V+VPT E+VA N RSRSAKLRA +R
Sbjct: 344 QEMMKPHWKQMHKHVMVPTDEEVADNPRSRSAKLRAAVR 382


>gi|223888788|ref|ZP_03623379.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b]
 gi|223885604|gb|EEF56703.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b]
          Length = 296

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SA+++VN  +  DL  ++  L  E  + +I+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRKISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVVKK 295


>gi|15594651|ref|NP_212440.1| hypothetical protein BB0306 [Borrelia burgdorferi B31]
 gi|8134806|sp|O51286|RSMH_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2688161|gb|AAC66643.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|312149012|gb|ADQ29083.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi N40]
          Length = 296

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVVKK 295


>gi|94264627|ref|ZP_01288410.1| methyltransferase [delta proteobacterium MLMS-1]
 gi|93454922|gb|EAT05163.1| methyltransferase [delta proteobacterium MLMS-1]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/318 (33%), Positives = 161/318 (50%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M +AI      H PVLLE+V+  L PA G   +D   G GG++ +          ++  D
Sbjct: 1   MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122
            D  A+   +  +  +  +    +  FS+L+  + +  +  +   + DLG+SS+Q+  G 
Sbjct: 55  WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQ   PLDMRM    G SA++++++ +  +L  I    GEE+QA  IA  +V  RQ
Sbjct: 115 RGFSFQADEPLDMRMDQRGGESAAEMLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                ++  L+ L+ + V    + R IH ATR FQALRI VN E+E L + L  A   L 
Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AG    V+SFHSLEDRLVK+ FA                      + +T K V   ++++
Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAG-----------------DRRLRVLTGKPVTAGEQEL 277

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N R+RSA+LR   +  
Sbjct: 278 GSNPRARSARLRVAEKVA 295


>gi|295698684|ref|YP_003603339.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola
           USDA]
 gi|291157297|gb|ADD79742.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola
           USDA]
          Length = 310

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 160/306 (52%), Gaps = 14/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
           +H+ VL E+VI  LN       +D TFG GG+S+      +    +IA+DRDP ++S  +
Sbjct: 5   NHIAVLPEEVIEGLNIKRDGTYIDCTFGQGGHSKLILSKLEKKGKLIAIDRDPKSISVAK 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS +  +  ++ +    +G++ DLG+S +QI+  +RGFSF+++G
Sbjct: 65  KIK---DSRFIIKHGLFSDIYQFAKEEKIVGKVNGILLDLGISMIQINDENRGFSFRRNG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+   GI A   + +A  +++  IL   GEEK++ +I+ +I ++      +    
Sbjct: 122 SLDMRMNPEVGIPAKKWLEKAKREEIELILRRYGEEKKSRKISRSIFRQNHKKNLKKITS 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              L++         R HPATR+FQA+RI +NNE+EEL + L  +   L     + V+SF
Sbjct: 182 TRQLVEIVSQIVSYKRKHPATRTFQAIRIHINNELEELKEVLEKSLMVLAPLSRIAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLE R++K F        +  +     N       + I K  + P + +V  N +SRSA
Sbjct: 242 HSLESRIIKNFIKKYDSNSIINKKTFKKNIPEYIKLKLIEK--IKPKRSEVYKNPKSRSA 299

Query: 310 KLRAGM 315
            LR   
Sbjct: 300 LLRIIQ 305


>gi|171920499|ref|ZP_02931791.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902972|gb|EDT49261.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 308

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 12/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+           +I LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+          VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKNNTN-VIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S   +A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K     K   + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKKLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMR 316
           S+ LR  +R
Sbjct: 298 SSILRGLIR 306


>gi|33239648|ref|NP_874590.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|42559452|sp|Q7VE18|RSMH_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33237173|gb|AAP99242.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 305

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/317 (34%), Positives = 161/317 (50%), Gaps = 30/317 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVI 62
            S I  +   H PVL+ +V+  +   P        ++DAT G GG+S    K     ++ 
Sbjct: 4   ESKIVTSKFKHTPVLVNQVLEAIAKLPSELLIKGKLIDATIGGGGHSALILKGFPSLHIT 63

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DP A+    + +  +  +  +  + F+   D+VP + V  V+ DLGVSS QID   
Sbjct: 64  GLDQDPSAIDAASKQLLHFGSRAEIISSNFA---DFVPQEEVAFVLADLGVSSPQIDEAK 120

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+ +GPLDMRM+   G+ A +++ +   K L  ++   GEEK + RIA  I +   
Sbjct: 121 RGFSFRLNGPLDMRMNPKKGLKADELLEKTEEKALADLIYKYGEEKFSRRIARRIKQDLS 180

Query: 182 SAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +      T+    ++        +N RIHPATR+FQALRI +NNE++ L   L+ A   L
Sbjct: 181 ANGPYEGTSALAYAIAGCYPPKMRNGRIHPATRTFQALRIAINNELDALQHLLQKAPNWL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG+  V+SFHSLEDRLVKK F                       + IT+K +     +
Sbjct: 241 LPGGVFAVISFHSLEDRLVKKSF-----------------LTDERLERITRKPIQADSNE 283

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RSRSAKLR   +
Sbjct: 284 KLNNPRSRSAKLRLAKK 300


>gi|326771704|ref|ZP_08230989.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505]
 gi|326637837|gb|EGE38738.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505]
          Length = 375

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 28/326 (8%)

Query: 17  IGDHVPVLLEKVIALLNP---------------APGKVILDATFGAGGYSRSFCKMGS-- 59
           +G H PVLLE+ + LL P                P  V++D T G GG++ +  +  +  
Sbjct: 14  VGRHKPVLLERCLDLLAPAIEGAAGSAAAPGPAQP--VMIDCTLGMGGHTEAALERFATL 71

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGV 113
            V+ +DRDP A++     +  + ++F   QAT+  +     +        VD V+ DLGV
Sbjct: 72  KVVGIDRDPEAIALASARLARFGDRFVAVQATYDAVSRVAREHSVRAEGTVDAVLMDLGV 131

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           SS+Q+D   RGFS+ +  PLDMRM   SG++A D++  A+  +LTRIL   GEE+ ASRI
Sbjct: 132 SSLQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLEHADAAELTRILRTYGEERFASRI 191

Query: 173 AHAIVKRRQSAPF--QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           A AIV+RR+S      T      + Q     ++ +  HPA R+FQALRI VN E++ L +
Sbjct: 192 AAAIVRRRESGDPVASTQDLAELVRQSVPAPARRSGGHPAKRTFQALRIAVNAELDVLER 251

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +  A  +L+ GG L+V S+ SLEDR+VK+  A  +         +         + +T 
Sbjct: 252 AVPRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEVDRPYLELLTN 311

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
                   ++  N RS   +LRA +R
Sbjct: 312 GAEKADARELDHNPRSAPVRLRAAVR 337


>gi|13508054|ref|NP_110003.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129]
 gi|2496335|sp|P75466|RSMH_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1674216|gb|AAB96169.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129]
          Length = 308

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 10/308 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           +   H  VLL++VI  LN       LD T G GG+S+   +      +   D D  +++ 
Sbjct: 3   SNQPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITF 62

Query: 74  GQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             E  +D K         A F      +     DG++ DLGVSS Q+D  +RGFSF+ +G
Sbjct: 63  CTELFKDKKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAG 122

Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188
           P DMRM  S    +A D++ + + ++LT +L   GE      IA A+      +    T 
Sbjct: 123 PFDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNPTTV 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +   ++      F K    +   + FQA+RI++N E+E L   L+   K L   G  +V+
Sbjct: 183 EVAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            FHSLE++LV+ +    +  V      +        F+ ITKK ++PT++++  N R RS
Sbjct: 243 VFHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRVRS 299

Query: 309 AKLRAGMR 316
           AKL    +
Sbjct: 300 AKLFVIEK 307


>gi|153006714|ref|YP_001381039.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5]
 gi|263446704|sp|A7HH59|RSMH_ANADF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152030287|gb|ABS28055.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5]
          Length = 310

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 163/315 (51%), Gaps = 29/315 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGG------------YSRSFCKMGSNVIALDRD 67
           H  VL  +V+ +L PAPG                        +S    + G+ VI LD+D
Sbjct: 7   HASVLAREVVEVLRPAPG------------KLLLDGTLGGGGHSELLLERGARVIGLDKD 54

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
           P A++     +  + E F   +A F   ++ +      GVDG + DLGVSS Q+D  DRG
Sbjct: 55  PRALAAATARLARWGEAFRAVRADFRDAKNVLSALGLTGVDGTLVDLGVSSPQLDQADRG 114

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSF + GPLDMRM   G    D++ + + ++L RIL   GEE  A  IA A+ +  +S  
Sbjct: 115 FSFSRPGPLDMRMGDEGERLEDLLRRIDERELARILREYGEEPFARPIARAVKRAVESDE 174

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T  L+ ++ K +       RIHPATR+FQALRI VN+E+  LA  L      L  GG
Sbjct: 175 ALDTARLADIVAKAIPRKAWPRRIHPATRTFQALRIAVNDELGALAAWLDGLPATLNVGG 234

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302
               +SFHSLEDR+VK+ F + +        +   +    A F +IT+K VV ++ +VA 
Sbjct: 235 RAAAISFHSLEDRMVKERFRALTQACTCPPDLPVCACGARASFAAITRKAVVASEAEVAE 294

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSAKLRA  + 
Sbjct: 295 NPRARSAKLRAVEKI 309


>gi|326564327|gb|EGE14557.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 103P14B1]
 gi|326565092|gb|EGE15285.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 46P47B1]
 gi|326570013|gb|EGE20059.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC7]
 gi|326574697|gb|EGE24633.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/328 (32%), Positives = 173/328 (52%), Gaps = 25/328 (7%)

Query: 9   MSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58
           MS+ I  +    H  VLL + +A+      LN        V +DATFG GG+S+   +  
Sbjct: 1   MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60

Query: 59  S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLG 112
           +    +   D+DP A++  +  +     +  +   +F+ L      +    +DG++ DLG
Sbjct: 61  APEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D G RGFSF + G +DMRM    G   S+ + + +  +L  +L   GEE+ + +
Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   
Sbjct: 180 IARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290
           L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F    +
Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPKR 295

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
             V P  ++V  N R+RSA LR  +R+ 
Sbjct: 296 --VGPCDQEVKANPRARSAWLRGAVRSD 321


>gi|332210617|ref|XP_003254406.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1 [Nomascus leucogenys]
          Length = 407

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 129/340 (37%), Positives = 184/340 (54%), Gaps = 39/340 (11%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS--FCKMGSNVIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++         + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           P   TQ L+S+         +Y  K       H AT++FQALRIFVNNE+ EL  GL++A
Sbjct: 247 PITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYMGLKTA 306

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281
           +K L+ GG L+ +SFHSLEDR+VK+F                +  K   +     +    
Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDYENTEEV 366

Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 367 SVRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|68535817|ref|YP_250522.1| S-adenosyl-methyltransferase MraW [Corynebacterium jeikeium K411]
 gi|88909195|sp|Q4JWA3|RSMH_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68263416|emb|CAI36904.1| S-adenosyl-methyltransferase [Corynebacterium jeikeium K411]
          Length = 342

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 29/334 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKMGSN--V 61
           +    G H PV+ ++++ L+            P  VI+D T GAGG+S +F     +  V
Sbjct: 1   MSEEHG-HTPVMRDRMVELVGLGVNSENAPARP--VIVDGTLGAGGHSEAFLDAFPHAIV 57

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFS-------------QLQDYVPDKGVDGVV 108
           + LDRDP A++     +  + ++F  +Q  F              +L   V + G+ G +
Sbjct: 58  VGLDRDPNALAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFL 117

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  +RGF++    PLDMRM  S   +A++++N  +  ++ RIL   G+E+
Sbjct: 118 FDLGVSSMQLDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDER 177

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A+V+ R+  PF+ +  L  L+  T+   S+    HPA R+FQALR+ VN E+E
Sbjct: 178 FAGKIASAVVREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELE 237

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L   +    + L  G + + +S+ SLED++VKK     S         +      A F+
Sbjct: 238 SLENLIPEISRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFE 297

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
             T+     ++ ++  N R+   ++RA  R  +R
Sbjct: 298 LRTRGAEKASEAEIEQNSRAAPVRVRAYSRVSDR 331


>gi|167972765|ref|ZP_02555042.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167973620|ref|ZP_02555897.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|167975916|ref|ZP_02558193.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|167987809|ref|ZP_02569480.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|168363028|ref|ZP_02696202.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|195867888|ref|ZP_03079887.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273780|ref|ZP_03206314.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225550865|ref|ZP_03771814.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551533|ref|ZP_03772479.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903084|gb|EDT49373.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|184209218|gb|EDU06261.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019063|gb|EDU57103.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998230|gb|EDU67327.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195659727|gb|EDX53107.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660465|gb|EDX53723.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249535|gb|EDY74317.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379348|gb|EEH01713.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225380019|gb|EEH02381.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 308

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               H  VLL + I LL+  P  + +D TFG GG+S+           +I +D+D  A+ 
Sbjct: 2   EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +D      + +  F  L+  + D     VDG VFDLG+SS Q+D  +RGFS+ K
Sbjct: 62  FANNLFKDNPN-VIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187
              LDMRM      +A  +VN  +   L  I    GE K A  IA+ IVK R   A   T
Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            + +  +   +       + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   +     IP N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKL--PKEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMR 316
           S+ LR  ++
Sbjct: 298 SSILRGLVK 306


>gi|209554330|ref|YP_002284822.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|263504480|sp|B5ZBN2|RSMH_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209541831|gb|ACI60060.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 308

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               H  VLL + I LL+  P  + +D TFG GG+S+           +I +D+D  A+ 
Sbjct: 2   EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +D      + +  F  L+  + D     VDG VFDLG+SS Q+D  +RGFS+ K
Sbjct: 62  FANNLFKDNPN-VIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187
              LDMRM      +A  +VN  +   L  I    GE K A  IA+ IVK R   A   T
Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            + +  +   +       + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILKKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   +     IP N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKL--PKEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMR 316
           S+ LR  ++
Sbjct: 298 SSILRGLVK 306


>gi|47459215|ref|YP_016077.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile
           163K]
 gi|51316218|sp|Q6KHR2|RSMH_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|47458544|gb|AAT27866.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile
           163K]
          Length = 302

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 15/309 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H+P+LL +V++  N     V++D T G  G+S+   K      +I +D+D  A++ 
Sbjct: 2   ESNVHIPILLNEVLSAFNLKETDVVIDLTLGRAGHSQEMLKKIPKGLLIGIDKDKSAITF 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +      F LF + FS++ D + +     V+ ++ DLG+SS QID  +RGFS+ K 
Sbjct: 62  SKEKLEQIGSNFKLFHSDFSKISDLLKELKISKVNAILIDLGISSPQIDNANRGFSYNKE 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+      A  +VN  + + L  +L    E K + +IA  I     + P +TT 
Sbjct: 122 SRLDMRMNLDQKLDAHFIVNSYSEEQLKNLLYRNAEIKNSRQIAKII---TSNRPIETTL 178

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            LS +++K +      +  P+   FQALR+ VN+EI  L   L++    L+  G + +++
Sbjct: 179 QLSVILKKYLPAFIVRKKDPSKAVFQALRVEVNDEINSLNFLLKNLVSILEENGKVAIIT 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           F+S+EDR+VKK+F S     +              F+    K  +P+++++  N RS+SA
Sbjct: 239 FNSIEDRIVKKYFGSFIKDDV---LAFLPTKKEKEFEV---KTYLPSKKELEENPRSKSA 292

Query: 310 KLRAGMRTV 318
           K+R   +  
Sbjct: 293 KMRVLKKIE 301


>gi|257068256|ref|YP_003154511.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM
           4810]
 gi|256559074|gb|ACU84921.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM
           4810]
          Length = 331

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 13/316 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
                HVPVLL+  + LL PA    G V +DAT G GG++ +         ++ +DRDP 
Sbjct: 9   PAEQRHVPVLLDTSVQLLAPALQDAGAVHVDATLGMGGHAAAVLHAAPRAHLVGIDRDPQ 68

Query: 70  AVSCGQETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
           A++  +E +      E+ +L  AT+ Q+ + + D    G  GV+ DLG+SS QID  DRG
Sbjct: 69  ALALARERLDREGVGERATLVHATYDQIPEVLEDLGLPGAHGVMMDLGLSSFQIDTADRG 128

Query: 125 FSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           FS+    PLDMRM     G +A+D++      ++ RIL  LG+E+ A RIA  +V++R+S
Sbjct: 129 FSYAVDAPLDMRMDTSSDGPTAADLLRDLPEAEIARILRDLGDERFAKRIARRVVQQRES 188

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           AP   + +L +L+++ +   SK +  HPA R+FQALRI VN E+E LA  L SA   +  
Sbjct: 189 APLTRSGELVALLERAIPAASKASGGHPAKRTFQALRIAVNEELEILASALESALDCVHV 248

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V S+HS EDRLVK  F  R          +    H   F  + +  +   + +  
Sbjct: 249 GGRIVVESYHSGEDRLVKTAFTRRIRSSAPPGLPVELEEHKPTFSPLVRGALQADEHERG 308

Query: 302 FNRRSRSAKLRAGMRT 317
            N R+ S +LRA  RT
Sbjct: 309 SNSRAASVRLRALTRT 324


>gi|325962941|ref|YP_004240847.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469028|gb|ADX72713.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 330

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 167/311 (53%), Gaps = 15/311 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGS- 59
           M      T   HVPVL ++ I LL P            V +DAT G GG+S +  +    
Sbjct: 1   MDEHQKPTSERHVPVLRDRCINLLAPGFEAARLRGETPVAIDATLGMGGHSEAMLQRFPD 60

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115
            ++I +DRD  A++   E +  +  +  L  A + ++ D + D     V G++ DLGVSS
Sbjct: 61  LHLIGIDRDEEALALAGERLAPFAARTDLVHAVYDEIPDVLADLGVSEVHGILMDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D  +RGF++    PLDMRM    G +A+DVVN  + ++L RI+   GEEK A RIA+
Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYSEEELVRIIRKWGEEKFAGRIAN 180

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV  R   PF TT +L   I+  V   +     HPA R+FQALRI VN E++ L + + 
Sbjct: 181 RIVAARAVKPFSTTGELVEQIRSVVPASAAKTGGHPAKRTFQALRIEVNEELDVLERAVP 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A  +L  GG ++V+S+HSLED++VK     RS     +   +    H    +++TK   
Sbjct: 241 AAVDSLAMGGRIVVMSYHSLEDKIVKGVLQGRSKSSAPLGFPVELEEHKPELKTLTKGTE 300

Query: 294 VPTQEDVAFNR 304
           VPT  ++A N 
Sbjct: 301 VPTAVEIAENP 311


>gi|320102436|ref|YP_004178027.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644]
 gi|319749718|gb|ADV61478.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644]
          Length = 309

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 32/306 (10%)

Query: 20  HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           HVPVL + V+  L   PG   ++LD T GAGG++    +       VI LDRDP  +   
Sbjct: 27  HVPVLPQAVLEAL---PGGEVILLDGTVGAGGHAALLARRLTGRGRVIGLDRDPAMLELA 83

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGDRGFSFQKSG 131
                 +     L  A++++ ++ +  +G+  +   L    +   Q+    RGFSFQ  G
Sbjct: 84  AR--ATHGLPVELVHASYTEAREVLAARGLTAIDGLLLDLGLSSDQLAWTHRGFSFQNDG 141

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR     G +A+D+V Q + + L  +    GEE+ + R+A  IV+ R+ AP  TTQ 
Sbjct: 142 PLDMRFDTTQGETAADLVAQLDAEQLADLFYRYGEERFSRRVARRIVEERRLAPILTTQR 201

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++++++ +   +   I PATR FQALRI VN E+E L + L    + LK GG   V+SF
Sbjct: 202 LATIVRRAIPG-RRGPIDPATRVFQALRIAVNRELEHLEEFLGGMAELLKPGGRAAVISF 260

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK  F                  +   +  ITKK +V T E+VA N R+RSAK
Sbjct: 261 HSLEDRKVKHAFR-----------------NDPRWTVITKKPIVATPEEVAANPRARSAK 303

Query: 311 LRAGMR 316
           LR   R
Sbjct: 304 LRVAQR 309


>gi|330794884|ref|XP_003285506.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum]
 gi|325084509|gb|EGC37935.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum]
          Length = 372

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 177/318 (55%), Gaps = 22/318 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H PV +++V+ +L+P P  V +DATFG GG+SR   +      VIA DRDP      ++ 
Sbjct: 60  HKPVFIKEVLEILDPKPNNVYIDATFGLGGHSRGILESCKDCYVIAFDRDPNVFELTKDL 119

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQK--S 130
              YK++     + FS ++  + D  ++      ++FD GVSS QID  +RGFSF+K   
Sbjct: 120 RTQYKDRLITIGSRFSSMKSALKDHNLENLKISGILFDYGVSSYQIDTAERGFSFKKELE 179

Query: 131 GPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQ 186
           GPLDMRM+       SA+D+VN  + ++L  I   LGEEK   +IAH I  KR      +
Sbjct: 180 GPLDMRMNNKNTSQLSAADIVNTFSEQELRDIFYHLGEEKHTRKIAHEILRKRAFGEKIE 239

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L  +++  + +   ++    +R F++LR++VN+E+ E+  GLR A+  L  G  L+
Sbjct: 240 TTSQLVKVVECCMPYPAASKT--ISRIFRSLRMYVNDELGEIKYGLREADDILSPGSPLL 297

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KK--VVVPTQEDVAF 302
            +SFHS+EDR+VK++    +   +   +   +N +   ++     K    + P+ E++ +
Sbjct: 298 AISFHSMEDRIVKQYL---NNNGLKSDYDTINNNNVIKYELPKSSKHTSPIFPSDEELEW 354

Query: 303 NRRSRSAKLRAGMRTVER 320
           N RS+SA LR  +RT  +
Sbjct: 355 NPRSKSAILRWAVRTQNK 372


>gi|306818510|ref|ZP_07452233.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239]
 gi|304648683|gb|EFM45985.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239]
          Length = 340

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 16/340 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSNV-- 61
            S I  T   H PVL+++ + LL P       P  V++DAT G GG+S +  +   ++  
Sbjct: 1   MSTITPTAAIHQPVLVQRCVELLAPALIPVERP--VLVDATVGLGGHSEALLQRFPHLQI 58

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
           I +DRD  A +   + +  +  +  +  AT+ QL + + ++    VDG++ DLGVSS+Q+
Sbjct: 59  IGIDRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQL 118

Query: 119 DCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           D   RGF++               GI+A+  +   +  ++ R+L   GEEK A +IA  I
Sbjct: 119 DETARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNI 178

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           VK R+  P +TT +L  LI+ T+    + +  +PA R+FQALR+ VN+E+ +L   L +A
Sbjct: 179 VKTREVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAA 238

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             AL+ GG L+V S+ SLEDRLVK+ F       +     +    +    Q +T+     
Sbjct: 239 LDALRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKA 298

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPT 335
              ++  N RS+S +LRA  +  E +  +    +    P 
Sbjct: 299 DALELQRNSRSQSVRLRAVAKLREMAPHEPKRTNPNPAPR 338


>gi|78778559|ref|YP_396671.1| methyltransferase [Prochlorococcus marinus str. MIT 9312]
 gi|123554751|sp|Q31D10|RSMH_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78712058|gb|ABB49235.1| methyltransferase [Prochlorococcus marinus str. MIT 9312]
          Length = 300

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 106/318 (33%), Positives = 167/318 (52%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61
           M + +  +   +H  V+ ++++A L         ++  +DAT G GG+S    +  S++ 
Sbjct: 1   MQTDLSDSSFFNHKSVMTDEILASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLH 60

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            I LD+DPFA     + + ++K +  +  A F+   D+ P + V  V+ DLGV+S QID 
Sbjct: 61  IIGLDQDPFARKSASKKLDEFKNRIDIRAANFA---DFEPKEKVSFVIADLGVNSNQIDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSFQK GPLDMRM+    + A  ++     KDL  ++   G+E+ + +IA  I   
Sbjct: 118 PKRGFSFQKDGPLDMRMNPFLEVDAEKLIETLQEKDLANLIYKYGDERLSRKIARKIKMD 177

Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +       T +   S+        +  +IHPATR+FQALRI VN EIE L + L+    
Sbjct: 178 LKVNGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQIVPD 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG++ ++SFHSLEDRLVK  F                  +    +++TKK + P++
Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSSFK-----------------NDQRLKNLTKKPITPSE 280

Query: 298 EDVAFNRRSRSAKLRAGM 315
           ++V  N+R+RS KLR   
Sbjct: 281 QEVEINKRARSGKLRVAQ 298


>gi|269978137|ref|ZP_06185087.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1]
 gi|269933646|gb|EEZ90230.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1]
          Length = 340

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 16/331 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSNV-- 61
            S I  T   H PVL+++ + LL P       P  V++DAT G GG+S +  +   ++  
Sbjct: 1   MSTITPTAAIHQPVLVQRCVELLAPALIPVERP--VLVDATVGLGGHSEALLQRFPHLQI 58

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
           I +DRD  A +   + +  +  +  +  AT+ QL + + ++    VDG++ DLGVSS+Q+
Sbjct: 59  IGIDRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQL 118

Query: 119 DCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           D   RGF++               GI+A+  +   +  ++ R+L   GEEK A +IA  I
Sbjct: 119 DETARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNI 178

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           VK R+  P +TT +L  LI+ T+    + +  +PA R+FQALR+ VN+E+ +L   L +A
Sbjct: 179 VKTREVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAA 238

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             AL+ GG L+V S+ SLEDRLVK+ F       +     +    +    Q +T+     
Sbjct: 239 LDALRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKA 298

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
              ++  N RS+S +LRA  +  E +  +  
Sbjct: 299 DALELQRNSRSQSVRLRAVAKLREMASHEPK 329


>gi|94266846|ref|ZP_01290506.1| methyltransferase [delta proteobacterium MLMS-1]
 gi|93452476|gb|EAT03075.1| methyltransferase [delta proteobacterium MLMS-1]
          Length = 301

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 107/318 (33%), Positives = 160/318 (50%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M +AI      H PVLLE+V+  L PA G   +D   G GG++ +          ++  D
Sbjct: 1   MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122
            D  A+   +  +  +  +    +  FS+L+  + +  +  +   + DLG+SS+Q+  G 
Sbjct: 55  WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQ   PLDMRM   G  SA++++++ +  +L  I    GEE+QA  IA  +V  RQ
Sbjct: 115 RGFSFQADEPLDMRMDQRGKESAAELLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                ++  L+ L+ + V    + R IH ATR FQALRI VN E+E L + L  A   L 
Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AG    V+SFHSLEDRLVK+ FA                      + +T K V    +++
Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAG-----------------DRRLRVLTGKPVTAGDQEL 277

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N R+RSA+LR   +  
Sbjct: 278 GSNPRARSARLRVAEKVA 295


>gi|301165427|emb|CBW24998.1| putative S-adenosyl-methyltransferase [Bacteriovorax marinus SJ]
          Length = 325

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 107/318 (33%), Positives = 169/318 (53%), Gaps = 29/318 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVS 72
            H  VL ++V+ +L     ++      D TFGAGG++ +  +     +V ++D+DP A+ 
Sbjct: 5   KHYSVLNKEVVDILMEDSEQLQNIKFADMTFGAGGHTFALAESAKNVSVYSVDQDPDALK 64

Query: 73  CGQETMRDYK--EQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFS 126
            G+E + +    E+  L    F Q  +++     +   +G+V DLGVSS   D GDRGFS
Sbjct: 65  NGKENINELGLSERVFLHDMNFEQFPEFIRSSDSEMKFNGIVADLGVSSHHFDEGDRGFS 124

Query: 127 FQKSGPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F+   PLDMRM        +A+D+VN  + +DL +I    GEEK   RI  +I++ R+SA
Sbjct: 125 FRFDAPLDMRMDVDNDELETAADIVNNYSKEDLEKIFFTYGEEKFTHRIVKSILEHRESA 184

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT+ L  +I        +  +I+PAT+ FQALRI VN E++ L   +    + L+  
Sbjct: 185 PIETTKQLEKIIIDCYPKKLQFGKINPATKCFQALRIKVNKELDVLENVIPGLLELLEIN 244

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L +++FHSLEDR+VK  F       +              ++   KK ++P+  ++  
Sbjct: 245 GRLAIITFHSLEDRIVKNLFKDAVQSDV-------------PYELYNKKPILPSHGELEE 291

Query: 303 NRRSRSAKLRAGMRTVER 320
           N RSRSAKLR   +  E+
Sbjct: 292 NPRSRSAKLRVITKINEK 309


>gi|308235562|ref|ZP_07666299.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14018]
          Length = 353

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           +      H PVLL+  + L++PA      V++D T G  G++ +F K    + ++ +DRD
Sbjct: 1   MKDLSTIHAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
             A+    + MR+    E+F    A F ++   + D     +D    DLG+SS+QID  D
Sbjct: 61  GEALELAIKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEED 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+  +  LDMRM     I+A+ ++   +   L  I    G+E+ +  IA  IV+ R+
Sbjct: 121 RGFSYSHNTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVRE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L  L+   +  S     +PA R FQALRI VN E+++LA+ L      L  
Sbjct: 181 ETPITTSGQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQ 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V S+HSLED  VK+F  +     +     I        F+S+T+  V  ++E++A
Sbjct: 241 GGRIVVESYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQPFFRSLTRGAVKASKEEIA 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 NNTRSSSVRLRAVE 314


>gi|84999750|ref|XP_954596.1| s-adenosyl-methyltransferase [Theileria annulata]
 gi|65305594|emb|CAI73919.1| s-adenosyl-methyltransferase, putative [Theileria annulata]
          Length = 389

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 37/327 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+PVLL++ +  L   P  + LD T G GG++    +       +I++DRDP +V   +
Sbjct: 72  EHIPVLLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRINPNGRLISIDRDPESVYFNR 131

Query: 76  ETMRDY--KEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ Y    + S+    FS + D      +P++G  G++ DLG+S+ Q++   RGFS+ 
Sbjct: 132 NRLKTYIDDSRLSVELGKFSGIIDLLKSLKLPNEGYTGIIADLGLSTHQLENSIRGFSYM 191

Query: 129 KSGPLDMRMSCS----------------GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           K+GPLDMRMS                    +A  +VN+++   L +I    G+E +A+ I
Sbjct: 192 KNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVNKSDESTLRKIFKEFGQEPRAASI 251

Query: 173 AHAI-VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A  I  KRR      TT  L S++  ++     +++   +R FQALRI VN+E+ EL+  
Sbjct: 252 AKKIVEKRRILGEIDTTDKLKSVVMDSLPMFHRSKMRTLSRIFQALRIKVNDELNELSSF 311

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L      LK  G  + +++H+LEDRLVK  F +                    F  +TKK
Sbjct: 312 LNMIPHLLKYNGRFVCITYHALEDRLVKNSFINLRNLKT----------STVKFNILTKK 361

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            ++PT+E+V  N +SR+AKLR   +  
Sbjct: 362 CILPTREEVESNIKSRTAKLRCIEKVK 388


>gi|311114349|ref|YP_003985570.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14019]
 gi|310945843|gb|ADP38547.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14019]
          Length = 358

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           +      H PVLL+  + L++PA      V++D T G  G++ +F K    + ++ +DRD
Sbjct: 6   MKDLSTIHAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRD 65

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
             A+    + MR+    E+F    A F ++   + D     +D    DLG+SS+QID  D
Sbjct: 66  GEALELAIKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEED 125

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+  +  LDMRM     I+A+ ++   +   L  I    G+E+ +  IA  IV+ R+
Sbjct: 126 RGFSYSHNTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVRE 185

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L  L+   +  S     +PA R FQALRI VN E+++LA+ L      L  
Sbjct: 186 ETPITTSGQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQ 245

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V S+HSLED  VK+F  +     +     I        F+S+T+  V  ++E++A
Sbjct: 246 GGRIVVESYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQPFFRSLTRGAVKASKEEIA 305

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 306 NNTRSSSVRLRAVE 319


>gi|157364289|ref|YP_001471056.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO]
 gi|262825835|sp|A8F758|RSMH_THELT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157314893|gb|ABV33992.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO]
          Length = 292

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 163/307 (53%), Gaps = 30/307 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPV++++V++  +     V LD T GAGG+S +  +   GS VI +D D   +S  ++ 
Sbjct: 5   HVPVMVKEVLSYFSNLR-GVFLDCTVGAGGHSEAILENIKGSVVIGIDVDEEILSVAKQR 63

Query: 78  MRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ Y+   +  L +AT+ + Q  +     K V+G++ DLGVS++Q+  G+RGF+F   GP
Sbjct: 64  LKKYESEGRAKLLKATYVEAQRVLSQLGVKAVNGIIMDLGVSTLQLMKGERGFAFSSDGP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +   +A D+VN      L RI    GEEK+            ++ P +TT  L
Sbjct: 124 LDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRY--AGRIARFIVKNRPVETTAKL 181

Query: 192 SSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             +I + +     +  R H ATR FQA+RI VNNE+E L   L      L   G +IV+S
Sbjct: 182 VEVIARALPEKERRFRRRHFATRVFQAIRIAVNNELENLRNFLVQVPDILNQNGRIIVIS 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+ F S                       +T+K V P+ E+V  N ++RSA
Sbjct: 242 FHSLEDRIVKEAFRS-----------------IQELDVLTRKPVRPSLEEVRENPKARSA 284

Query: 310 KLRAGMR 316
           K+R   R
Sbjct: 285 KMRIAER 291


>gi|227875248|ref|ZP_03993390.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|307700815|ref|ZP_07637840.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16]
 gi|227844153|gb|EEJ54320.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|307613810|gb|EFN93054.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16]
          Length = 340

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 16/331 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSNV-- 61
            S I  T   H PVL+++ + LL P       P  V++DAT G GG+S +  +   ++  
Sbjct: 1   MSTITPTAAIHQPVLVQRCVELLAPALIPVERP--VLVDATVGLGGHSEALLQRFPHLQI 58

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
           I +DRD  A +   + +  +  +  +  AT+ QL + + ++    VDG++ DLGVSS+Q+
Sbjct: 59  IGIDRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQL 118

Query: 119 DCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           D   RGF++               GI+A+  +   +  ++ R+L   GEEK A +IA  I
Sbjct: 119 DETARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNI 178

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           VK R+  P +TT +L  LI+ T+    + +  +PA R+FQALR+ VN+E+ +L   L +A
Sbjct: 179 VKTREVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAA 238

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             AL+ GG L+V S+ SLEDRLVK+ F       +     +    +    Q +T+     
Sbjct: 239 LDALRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKA 298

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
              ++  N RS+S +LRA  +  E +  +  
Sbjct: 299 DALELQRNSRSQSVRLRAVAKLREMAPHEPK 329


>gi|86606931|ref|YP_475694.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab]
 gi|123505404|sp|Q2JSF0|RSMH_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86555473|gb|ABD00431.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab]
          Length = 309

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 163/314 (51%), Gaps = 35/314 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H  VL E V+A L P  G   LD T G GG+S +  + G+  V+ LDRDP A+   Q  +
Sbjct: 16  HESVLTEAVVAYLQPQQGGAFLDVTLGGGGHSLALLQRGADRVVGLDRDPTALQAAQARL 75

Query: 79  R---DYKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   +  L+   F+           +       DG+V DLGVSS Q+DC +RGFSF
Sbjct: 76  AAAGIPGNRLQLWHLNFADFDLQRHGFRDERGQGIPFDGIVADLGVSSPQLDCPERGFSF 135

Query: 128 QKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  GPLDMRM       +A+D VN+  V+DL  I    GEE+ A RIAH I + R     
Sbjct: 136 RAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGEERFARRIAHHIERSRPLF-- 193

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+ ++ + V   ++  RIHPATR FQALRI VN E+E L   L  A   LK GG 
Sbjct: 194 -TTTQLAHVVWQAVPPAARRGRIHPATRIFQALRIAVNRELEALETLLAQAPNWLKPGGR 252

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDRLVK  F +                    +Q +T K + P++ +   N 
Sbjct: 253 LAVISFHSLEDRLVKWAFRT-----------------DPRWQVLTPKPLCPSELEQQRNS 295

Query: 305 RSRSAKLRAGMRTV 318
           R+RSAKLR   R+ 
Sbjct: 296 RARSAKLRVAARSS 309


>gi|271964366|ref|YP_003338562.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium
           roseum DSM 43021]
 gi|270507541|gb|ACZ85819.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium
           roseum DSM 43021]
          Length = 330

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H  G HVPV+LE+V+ LL PA   P  V++DA  G GG++ +        ++I +DRDP 
Sbjct: 11  HAPGGHVPVMLERVLELLAPALAGPAPVVVDANLGLGGHAEALLAAHPSLHLIGIDRDPT 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  Y E+ +L +A   +L + + +     VD V+FDLGVSS Q+D  +RGF+
Sbjct: 71  AIERSTARLAPYAERTTLVRAVSDELTEVLAEAGRPRVDAVLFDLGVSSPQLDEAERGFA 130

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM      +A  VVN  +  +L RIL   GEE+ A R+A  I+K R +   
Sbjct: 131 YSYDAPLDMRMDRDQELTAEIVVNTYSAAELIRILRDYGEERFAPRVARLIIKERGNEAI 190

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +T+ L+ +++  +   ++    +PA R+FQALRI VN E+  L + L +A  AL  GG 
Sbjct: 191 TSTKRLAEIVRTAIPAATRRTGGNPAKRTFQALRIEVNAELTALERALPAALDALTLGGR 250

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+++HSLEDRL K+  A+R+ +       +P  AH   F  +T+   +P++E+VA N 
Sbjct: 251 VVVLAYHSLEDRLTKQVLAARTRETGPPGLPVPLPAHQPRFALLTRGAELPSEEEVARNP 310


>gi|326382552|ref|ZP_08204243.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198671|gb|EGD55854.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 339

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 16/325 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59
           M+S      G HVPV+ +++ ALL PA         G V++D T GAGG++  F      
Sbjct: 1   MNSPQQGDHG-HVPVMADRMFALLEPALTRVSADGTGAVLVDGTLGAGGHTEYFLDRLDG 59

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSS 115
             VIA+DRD  A+    E +  + ++       + +++D V       VDGV+ DLGVSS
Sbjct: 60  LYVIAIDRDTSAIGIASERLGRFGDRVEFHHNRYDEIEDVVHAAGRTVVDGVLLDLGVSS 119

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQ+D  +RGF++    PLDMRM+     +A+D++N  +   L R+L   GEE+ A +IA 
Sbjct: 120 MQLDRAERGFAYAVDAPLDMRMNADDELTAADILNTYDHGALARVLSEYGEERFAGKIAS 179

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           A+V+ R   PF T+  L  L+  T+   ++    HPA R+FQALRI VN+E++ L   + 
Sbjct: 180 AVVRERAKEPFTTSGRLVELLYATIPAATRRTGGHPAKRTFQALRIEVNHELDSLRGVIP 239

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           ++ + L  GG L V+S+ SLEDR+VK+ FA            +        F  +T+   
Sbjct: 240 ASLEVLGIGGRLAVMSYQSLEDRIVKRDFARAVENTTPAGLPVDLPGTAPEFSLVTRGAE 299

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
                + A N RS   ++RA  R  
Sbjct: 300 QADAAERAANPRSAPVRIRAIERIA 324


>gi|183508652|ref|ZP_02958151.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|182676119|gb|EDT88024.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 308

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+           +I LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+          VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKNNTN-VIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S   +A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFVKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +   +   + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMR 316
           S+ LR  +R
Sbjct: 298 SSILRGLIR 306


>gi|330723232|gb|AEC45602.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis MCLD]
          Length = 298

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL++VI  LN     + LD T G GG+S    K      +I  D+D  A+   +E 
Sbjct: 3   HIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKEK 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +           + F      +       VDGV+ DLGVSS Q+D  +RGFS+ K   LD
Sbjct: 63  LLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARLD 122

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     SA ++VN+ + + L  I    G+   A+ IA  I    +  P   T +L  
Sbjct: 123 MRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAEDI---VKLRPITYTTELVD 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+ ++      + +PA   FQA+RI VN E+E L   L   +K LK  G L +++FHSL
Sbjct: 180 IIKHSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           ED++VK +F     +      +             T       Q+++  N+R++SAKLR 
Sbjct: 240 EDKIVKNYFKQLLKQNQT---LFFETTQAKYLVKTT----WANQKEIDNNKRAKSAKLRV 292

Query: 314 GMRTVE 319
             + + 
Sbjct: 293 LTKLIN 298


>gi|186701697|ref|ZP_02971391.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700956|gb|EDU19238.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 308

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+           +I LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+          VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKNNTN-VIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S   +A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +   +   + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMR 316
           S+ LR  +R
Sbjct: 298 SSILRGLIR 306


>gi|304373145|ref|YP_003856354.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis HUB-1]
 gi|304309336|gb|ADM21816.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis HUB-1]
          Length = 298

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL++VI  LN     + LD T G GG+S    K      +I  D+D  A+   +E 
Sbjct: 3   HIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKEK 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +           + F      +       VDGV+ DLGVSS Q+D  +RGFS+ K   LD
Sbjct: 63  LLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARLD 122

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     SA ++VN+ + + L  I    G+   A+ IA  I    +  P   T +L  
Sbjct: 123 MRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAENI---VKLRPITYTTELVD 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I++++      + +PA   FQA+RI VN E+E L   L   +K LK  G L +++FHSL
Sbjct: 180 IIKQSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           ED++VK +F     +      +             T       Q+++  N+R++SAKLR 
Sbjct: 240 EDKIVKNYFKQLLKQNQT---LFFETTQAKYLVKTT----WANQKEIDNNKRAKSAKLRV 292

Query: 314 GMRTVE 319
             + + 
Sbjct: 293 LTKLIN 298


>gi|257453541|ref|ZP_05618831.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60]
 gi|257448999|gb|EEV23952.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60]
          Length = 319

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/325 (32%), Positives = 166/325 (51%), Gaps = 28/325 (8%)

Query: 12  AIHHTIGDHVPVLLEKVI-ALLN----------PAPGKVILDATFGAGGYSRSFC---KM 57
            +      H  VLL++ + ++LN                 +DATFG GG+SR        
Sbjct: 2   TVSAPEFIHETVLLKETVASVLNVTVAALETGIIKKTGTFVDATFGRGGHSRLLLTYLDK 61

Query: 58  GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVS 114
            S ++  D+DP A+   Q  +     +  +   +F++LQD +     + VDG++ DLGVS
Sbjct: 62  DSRLLVFDKDPQAIQTAQA-LAASDARVIVIHDSFAKLQDNLQRLGIEQVDGIMADLGVS 120

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S Q+D G RGFSF + G +DMRM    G S +  + + +   L  +L   GEE+ + RIA
Sbjct: 121 SPQLDDGSRGFSFMRDGAVDMRMDTTRGESVAQWLKRVDETVLADVLYNYGEERHSRRIA 180

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI +      + +T  L+  I++     +  + HPAT+SFQA+RIF+NNE+ ++   L 
Sbjct: 181 RAIKQME---HYDSTLALAETIKQAHPNWQKGK-HPATQSFQAMRIFINNELGDIDSFLA 236

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            +  ALK GG L V+SFHSLEDR++K+F    S         +P    P   + ++ K  
Sbjct: 237 QSLIALKVGGRLAVISFHSLEDRIIKQFLQKHSKGQYPEDANLPM--PPKRPKLLS-KPE 293

Query: 294 V--PTQEDVAFNRRSRSAKLRAGMR 316
              P   ++  N R+RSA LR+  R
Sbjct: 294 RVAPLATEIKTNPRARSALLRSATR 318


>gi|224534257|ref|ZP_03674835.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S]
 gi|224514359|gb|EEF84675.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S]
          Length = 295

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 169/305 (55%), Gaps = 23/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPLKSNLIYIDSTLGEGVHAKAILEKYGFLSLVGIERDSQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +R ++ + + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLRIFEGRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKGSKKGFSFFEDEPL 126

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+     ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L 
Sbjct: 127 DMRLCSSCSISAAEIVNTFSRYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKELQ 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FHS
Sbjct: 187 SIISKVYPFSK-FKINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKLR
Sbjct: 246 IEDRIVKDFFKSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKLR 290

Query: 313 AGMRT 317
           A  + 
Sbjct: 291 ALKKI 295


>gi|13357947|ref|NP_078221.1| hypothetical protein UU386 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762354|ref|YP_001752469.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|20139253|sp|Q9PQA4|RSMH_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504475|sp|B1AJ25|RSMH_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|11278383|pir||D82897 conserved hypothetical UU386 [imported] - Ureaplasma urealyticum
 gi|6899371|gb|AAF30796.1|AE002136_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827931|gb|ACA33193.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 308

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+           +I LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+          VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKNNTN-VIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S   +A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K +   +   + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMR 316
           S+ LR  +R
Sbjct: 298 SSILRGLIR 306


>gi|225549158|ref|ZP_03770133.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a]
 gi|225370384|gb|EEG99822.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a]
          Length = 296

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+  ++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFGEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|257458736|ref|ZP_05623859.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268]
 gi|257443724|gb|EEV18844.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268]
          Length = 311

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               H+PVL  + IA  +      ++D T G GG+S        +  +IA DRD  A+  
Sbjct: 1   MQAPHIPVLFSQTIAAFSQLEDGYVIDCTLGYGGHSEGILTANPHLKLIACDRDAEAIEF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  +K++  + +A FS++   +P++    V G++ D+GVSS+Q+D   RGFS +  
Sbjct: 61  SRERLSKFKDRIEIHKAKFSEILKILPEQKLRAVRGILADIGVSSLQLDKNCRGFSTKSD 120

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
                    + + A+ VVN+ +  DL RI    GE   A+ IA  I   R +AP  + + 
Sbjct: 121 ALDMRMDESAALDAAYVVNRYSQADLARIFREYGELTNANAIAAKIATARTNAPLTSAKA 180

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA----GGLLI 246
           L++LI       K   I  AT +FQA+RI VN+E+ EL + L   E+  +        + 
Sbjct: 181 LANLIG--TKPVKGRSISTATLAFQAIRIEVNDELGELKRLLTLIEQKSRDSILTNATVA 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++SFHSLEDR+VK+ F +     +              ++ + +TK  +    +++A N 
Sbjct: 239 IISFHSLEDRIVKEQFKAWERDCVCPSEFMRCECGGDHSLGKILTKSPLTADAQELAQNS 298

Query: 305 RSRSAKLRAGM 315
           R+ SAKLR   
Sbjct: 299 RAASAKLRIFR 309


>gi|189485180|ref|YP_001956121.1| SAM-dependent methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|263504473|sp|B1GZH8|RSMH_UNCTG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170287139|dbj|BAG13660.1| SAM-dependent methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 291

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 21/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PV+  +    L   PG + +D TFG GG++           ++A D D  +     E 
Sbjct: 3   HIPVMPLETSRYLIGKPGGLYVDCTFGGGGHALYLLDKFKDIKIVAFDWDEDSSKRFIER 62

Query: 78  MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +++  + +  +  F  ++     +    VDG++ D+GVSS Q    DRGFSF       
Sbjct: 63  EKEFSGRVTFIRDNFKNVKKALSALNISKVDGILADIGVSSKQFGDLDRGFSFNSGTLDM 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
                +G  A +VVN  + +DL  I    GEE+++ +IA AI+ RR+     T  +L ++
Sbjct: 123 RMDKRNGFEAKEVVNSYSYEDLADIFYKYGEERKSRQIASAILLRRKRGIINTASELQTV 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I          RI+PAT+ FQALRIFVN+E+E LA  L  A + L AGG  +++SFHSLE
Sbjct: 183 ICSVKRP--EGRINPATKVFQALRIFVNSELENLAVLLSDAPELLNAGGRTVIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+ F   S                 +++ +TKKVV   +E+V  N  SRSA++RA 
Sbjct: 241 DRIVKQNFKRNSECG--------------IYKILTKKVVTALKEEVKINPGSRSARIRAA 286

Query: 315 MRTV 318
            +T 
Sbjct: 287 EKTS 290


>gi|86740113|ref|YP_480513.1| S-adenosyl-methyltransferase MraW [Frankia sp. CcI3]
 gi|123737617|sp|Q2JD58|RSMH_FRASC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86566975|gb|ABD10784.1| methyltransferase [Frankia sp. CcI3]
          Length = 321

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 169/314 (53%), Gaps = 11/314 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           L ++V+ LL PA    G +++DAT G GG++ +         ++ LDRDP A+    E +
Sbjct: 2   LTDRVLTLLAPALRASGAIVVDATVGLGGHAAAVLTAFPHVRLVGLDRDPDALERSGERL 61

Query: 79  RD-YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 +  L  A + ++ + +       V G++FDLGVSS+Q+D  DRGF++ +  PLD
Sbjct: 62  HGLAPGRVELVHAVYDEVAEILDRLGHPVVQGILFDLGVSSLQLDTDDRGFAYSRDAPLD 121

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM    G +A+DV+N  +   LTRIL   GEE+ A RIA AIV+ R   PF T+  L+ 
Sbjct: 122 MRMDQTRGRTAADVLNTYDADALTRILREYGEERFARRIAGAIVQARAVTPFATSARLAD 181

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           L++  +    +    +PA R+FQALRI VN E++ LA+ L +A  AL   G L+V+S+HS
Sbjct: 182 LVRDAIPAPARRTGGNPAKRTFQALRIEVNAELDVLARALPAAFDALAVSGRLVVLSYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+     +   +     +         + +T+     ++ + A N R+ S +LR
Sbjct: 242 LEDRLVKRQLRGYAEASVPPDLPVVPEGAGPRLRWLTRGAEPASETEKAENPRAASVRLR 301

Query: 313 AGMRTVERSIEDDS 326
           A  RT         
Sbjct: 302 AVERTAPNPDHTRK 315


>gi|260578096|ref|ZP_05846017.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603735|gb|EEW16991.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Corynebacterium jeikeium ATCC 43734]
          Length = 342

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 29/334 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKMGSN--V 61
           +    G H+PV+ ++++ L+            P  VI+D T GAGG+S +F     +  V
Sbjct: 1   MSEEHG-HIPVMRDRMVELVGLGVNSENAPARP--VIVDGTLGAGGHSEAFLDAFPHAIV 57

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFS-------------QLQDYVPDKGVDGVV 108
           + LDRDP A++     +  + ++F  +Q  F              +L   V + G+ G +
Sbjct: 58  VGLDRDPNALAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFL 117

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  +RGF++    PLDMRM  S   +A++++N  +  ++ RIL   G+E+
Sbjct: 118 FDLGVSSMQLDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDER 177

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A+V+ R+  PF+ +  L  L+  T+   S+    HPA R+FQALR+ VN E+E
Sbjct: 178 FAGKIASAVVREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELE 237

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L   +    + L  G + + +S+ SLED++VKK     S         +      A F+
Sbjct: 238 SLENLIPEISRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFE 297

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
             T      ++ ++  N R+   ++RA  R  +R
Sbjct: 298 LRTSGAEKASEAEIEQNSRAAPVRVRAYSRVSDR 331


>gi|260435603|ref|ZP_05789573.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109]
 gi|260413477|gb|EEX06773.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109]
          Length = 294

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 161/307 (52%), Gaps = 28/307 (9%)

Query: 20  HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           H PVL + V+      P P  +++DAT G GG+S    +      +I LD+D  A +   
Sbjct: 6   HEPVLADAVLDAARQIPRPDGLLIDATLGGGGHSARLLQQHPSLRLIGLDQDATARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  +  + S+    F+   DYVP +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLAPFGARVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQSAPFQTTQDL 191
           RM+    G +A++++++    +L  ++   GEE+ + RIA  I    + + +   T    
Sbjct: 123 RMNASGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDKGSYEGTAALA 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L+  GLL ++SFH
Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPEGLLGIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       + IT+K VV T+++   N RSRSAKL
Sbjct: 243 SLEDRRVKTAF-----------------LRDERLKRITRKPVVATEQEEEANPRSRSAKL 285

Query: 312 RAGMRTV 318
           R   R  
Sbjct: 286 RVAQRLN 292


>gi|156083547|ref|XP_001609257.1| S-adenosyl methyltransferase [Babesia bovis T2Bo]
 gi|154796508|gb|EDO05689.1| S-adenosyl methyltransferase, putative [Babesia bovis]
          Length = 420

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/328 (32%), Positives = 156/328 (47%), Gaps = 39/328 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL++ + +L   P    LD T G GG++ +  K+      ++ALDRDP +V    +
Sbjct: 98  HEPVLLKEALDMLVIDPDGRYLDLTLGYGGHTEAILKLLSPKGVLVALDRDPESVYYTSK 157

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +  Y   +Q      TFS L   +           G++ DLG+S+ Q++   RGF++  
Sbjct: 158 RLEQYVRSKQLVPVIGTFSNLNSVLESNNLPLKDYTGIIADLGISTHQLEDPKRGFAYNT 217

Query: 130 SGPLDMRMSCS------------------GISASDVVNQANVKDLTRILGILGEEKQASR 171
            GPLDMRMS                    G  A  ++N+   +D+  +L   GEE +A  
Sbjct: 218 DGPLDMRMSNPLYDPFNPRDDIVKPNLDTGNIAFKLINKGREQDIAYVLREYGEEPRAII 277

Query: 172 IAHAI-VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I  KR++     TT  L  ++   V  +    +   +R FQALRI+VNNE++ELA 
Sbjct: 278 IARRIVEKRQRLGEIATTFQLRDIVLSCVRGNHKAGMKTLSRVFQALRIYVNNELDELAH 337

Query: 231 GLRSAEKA-LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
            L  A        G  +V+S+HSLEDR VK  F                      ++ IT
Sbjct: 338 LLDHAPSILNPKQGRFVVISYHSLEDRAVKHAFTGLQKLKTMSND---------SYKVIT 388

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           KK V PT E+   N+++RSAKLR   R+
Sbjct: 389 KKCVTPTLEECTSNQKARSAKLRCLERS 416


>gi|206896128|ref|YP_002247018.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus
           DSM 5265]
 gi|263446122|sp|B5Y8C1|RSMH_COPPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206738745|gb|ACI17823.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 299

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 23/304 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           +H PV+ ++V  LL      + +DAT G+GG+           + I +D DP AV    E
Sbjct: 6   EHKPVMAKQVAELLVSNEEGIYVDATAGSGGHLGLLANTYPEASFIGIDIDPEAVKFLTE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                     + +  ++ L D +       VDG++ DLG+S  Q     RGFS +  GPL
Sbjct: 66  KFAGVSN-VRIIRGNYADLPDILHSMEIGQVDGILLDLGISMHQALSAQRGFSIKNPGPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR S     +A ++VN  + + L  I+   GEE++A +IA A+V+ R+  P +TT +L+
Sbjct: 125 DMRFSIDQKVTAYELVNSLSEEQLADIIYRYGEERRARKIAKAVVEARKVKPLETTDELA 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ +TV +    RIHPATR FQALRI  N E++ L   L    + LK GG L V+S+HS
Sbjct: 185 DLVARTVGY--RGRIHPATRVFQALRIATNRELDNLQVALPRIFQVLKEGGRLAVISYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+FF +   +   +R              +TKKVV P+ E++  N  SRSAKLR
Sbjct: 243 LEDRIVKQFFKTWEEEGKGLR--------------LTKKVVKPSLEEINENPSSRSAKLR 288

Query: 313 AGMR 316
              +
Sbjct: 289 VFKK 292


>gi|123967726|ref|YP_001008584.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. AS9601]
 gi|262824992|sp|A2BNW6|RSMH_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123197836|gb|ABM69477.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. AS9601]
          Length = 300

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/318 (33%), Positives = 170/318 (53%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61
           M + +  +   +H  V+ ++++A L         ++  +DAT G GG+S    +  S++ 
Sbjct: 1   MQTDLSDSSFFNHQSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLN 60

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            I LD+DPFA     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S QID 
Sbjct: 61  IIGLDQDPFARKSASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   GEE+ + +IA  I   
Sbjct: 118 PKRGFSFQKDGPLDMRMNPFLDVDADKLIEALNEKDLANLIYKYGEERLSRKIARKIKLD 177

Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +       T +   S+        +  +IHPATR+FQALRI VN EIE L + L+   +
Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPE 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG++ ++SFHSLEDRLVK  F                  +    +++TKK + P++
Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSCFK-----------------NDQRLKNLTKKPITPSE 280

Query: 298 EDVAFNRRSRSAKLRAGM 315
           +++  N+R+RS KLR   
Sbjct: 281 QEIELNKRARSGKLRIAQ 298


>gi|187251661|ref|YP_001876143.1| putative S-adenosylmethionine-dependent methyltransferase
           [Elusimicrobium minutum Pei191]
 gi|263447006|sp|B2KE60|RSMH_ELUMP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|186971821|gb|ACC98806.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Elusimicrobium minutum
           Pei191]
          Length = 293

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 26/307 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVL +++  +L      V +D T G GG+++    +      +I  D+D  AV   +
Sbjct: 5   THIPVLTKEIGQMLITDINGVYIDGTLGLGGHTKYLLGLLGKEAKIIGFDKDYNAVKMAE 64

Query: 76  ETMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + D   + +    ++      L+D     G DGV+ DLG+SS Q+D   RGFSF   G
Sbjct: 65  ANVAD--GRLTAINLSYEAAPKVLKDLKIQGGADGVLLDLGLSSYQLDDASRGFSFMGGG 122

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR   SG  +A+DVVN    ++L RI    GEE  A   A AIV+ R     +TT +
Sbjct: 123 PLDMRFDISGQKTAADVVNSYTAEELERIFANYGEETNARNAAAAIVRARVDKKIKTTSE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++++   +   +  + H ATR FQALRI VN+E+  + + ++   + LK GG   V++F
Sbjct: 183 LANILAPVLP--RRGKTHGATRVFQALRIEVNDELGTVERFIKVLPEVLKPGGRAAVITF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK  F   S +                 + + K V+ P  E+V  NRRSRSAK
Sbjct: 241 HSLEDRIVKNIFKQMSAEGEV--------------KLVNKHVIEPEWEEVKNNRRSRSAK 286

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 287 LRVAEKI 293


>gi|282857251|ref|ZP_06266491.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455]
 gi|282584901|gb|EFB90229.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455]
          Length = 313

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 114/318 (35%), Positives = 167/318 (52%), Gaps = 23/318 (7%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
              +HVPVLL KV+  ++     +I+D T G GGYS +F K      V+ +DRD  A + 
Sbjct: 1   MEFEHVPVLLAKVVESMDLKADALIVDGTLGLGGYSEAFLKRSPRWRVVGIDRDERARNI 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             + +  + E+F      F  +         + VD VV DLGVS+MQ+  G RGFSF++ 
Sbjct: 61  ACQRLAPFGERFLALDGDFRNIGGLCASVGIRAVDCVVLDLGVSNMQLADGRRGFSFRED 120

Query: 131 GPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           GPLDMRM+ +    SAS++VN+   + L  I    GEE+ A  IA  IVK R   P  +T
Sbjct: 121 GPLDMRMNPAEGTRSASELVNELPRESLADIFRKYGEERFAWSIAGEIVKERLKRPITST 180

Query: 189 QDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            +L  +I++ +     +    HPA + FQALR+ VN+E+  L QGL  A   L   G L+
Sbjct: 181 AELVEVIRRGIPAPVMRKMNGHPARKVFQALRVAVNDELGALEQGLDEAFSLLAEEGRLL 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV++HSLEDR+VK+ F   + +   V                 +K  VP  E+V  N +S
Sbjct: 241 VVTYHSLEDRIVKRRFREWNEEGKGVLEP--------------RKGQVPDDEEVERNPKS 286

Query: 307 RSAKLRAGMRTVERSIED 324
           RSA+LR  ++    +  +
Sbjct: 287 RSARLRGFLKKNVPNKAE 304


>gi|148240649|ref|YP_001226036.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803]
 gi|262825757|sp|A5GP74|RSMH_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147849188|emb|CAK24739.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803]
          Length = 305

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 159/317 (50%), Gaps = 31/317 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66
             +   HVPVL + ++  L+  P       +++DAT G GG+S           +I LD+
Sbjct: 8   TDSTFRHVPVLADVLLNALDEEPSVHWQSGLVVDATLGGGGHSSLLLDRYPDLRLIGLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A +     +  +KE+ S+    F+   DY P +    V+ DLGVSS Q+D   RGFS
Sbjct: 68  DPTARAAAATRLSPWKERVSIVATNFA---DYSPPQSASLVLADLGVSSPQLDVAARGFS 124

Query: 127 FQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182
           F+  GPLDMRM+    G +A +++ +    DL  ++   GEE+ + RIA  I      Q 
Sbjct: 125 FRLDGPLDMRMNPESDGETAGELIERMEESDLADLIYAYGEERLSRRIARRIKADLAAQG 184

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T     ++       ++  RIHPATR+FQALRI VN+E+  L Q L SA   L+ G
Sbjct: 185 PYAGTASFAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDQLLSSAPGWLQPG 244

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           GLL ++SFHSLEDR VK  F                         IT++ +V + E+   
Sbjct: 245 GLLAIISFHSLEDRRVKTAF-----------------LQDERLDRITRRPLVASAEEQER 287

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   +  E
Sbjct: 288 NPRSRSAKLRIARKRSE 304


>gi|284931424|gb|ADC31362.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. F]
          Length = 313

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + LD T G GG+S          + +I  D+D  A++  ++
Sbjct: 9   HYPVLLKEVIENLITIKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLQAIAHCKQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++    SL    F  L+     +    +DG + DLGVSS Q+D  DRGFS+   G L
Sbjct: 69  LFSEFNN-VSLINDNFVNLKKHLQLMQIDKIDGCLIDLGVSSYQLDRADRGFSYHSLGRL 127

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +    A+ ++  + V +L +I+   GE K   R+  A+ K  +     T + + 
Sbjct: 128 DMRMDQNKEVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLEVVE 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            + +           HPA R FQALRI VNNE+E L + L      L  GG + +++FHS
Sbjct: 188 LIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFHS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LE+++VKK F   +    ++ ++  +N     + +   K + PTQ ++  NRRSRSAKL 
Sbjct: 248 LEEKIVKKVFRHLA-STSSLNNLPINNELLKKYHNHFNKGLSPTQSELETNRRSRSAKLF 306

Query: 313 AGMRTVE 319
              +   
Sbjct: 307 VLEKINN 313


>gi|300858822|ref|YP_003783805.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686276|gb|ADK29198.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206527|gb|ADL10869.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis C231]
 gi|302331082|gb|ADL21276.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276769|gb|ADO26668.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis I19]
          Length = 351

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 171/329 (51%), Gaps = 23/329 (6%)

Query: 20  HVPVLLE---KVIALLNPAPG--KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           HVPVL E   ++I+      G   VILD T GAGG+S  F +      VI LDRD  +++
Sbjct: 19  HVPVLRERMAELISAPVIKMGTSAVILDGTLGAGGHSAFFLESFPEACVIGLDRDLHSLN 78

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------------VDGVVFDLGVSSMQI 118
             +E +  Y ++F      F      +                  + G +FDLGVSSMQ+
Sbjct: 79  NARERLSIYGDRFLGIHTRFDHFLPKLQQHAEAGDEIALKALRHGISGALFDLGVSSMQL 138

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF+++   PLDMRM    GI+A+D++N  +  DL RIL + GEE+ A +IA A+V
Sbjct: 139 DQAERGFAYRVDAPLDMRMDDSKGITAADILNTYSHGDLARILKVYGEERFAGKIASAVV 198

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           K R+ APF  +  L  L+  T+   ++    HPA R+FQALRI VN E+E +   L    
Sbjct: 199 KEREKAPFTHSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNKELESIENVLPVVT 258

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG  + +S+ SLED++VK++F   S         +      A F+ +T+      
Sbjct: 259 GCLAKGGRAVFMSYQSLEDKIVKRYFVDISTSKSPPGLPMDLPGMEAGFKVVTRGAEKAN 318

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
           ++++A N R+ S ++RA     E +  D+
Sbjct: 319 EQEIAENPRAASVRVRAIESLKESTTADE 347


>gi|262831569|sp|A0PTJ6|RSMH_MYCUA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 345

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 18/317 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVL ++ + LL PA           V++DAT GAGG++  F        +I LDRDP 
Sbjct: 15  HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L        Y   + +DG +FDLGVSSMQ+D  +R
Sbjct: 75  ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ K  PLDMRM+     S +D++N  +   L  IL   GEE+ A RIA  I++RR  
Sbjct: 135 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L +L+ + +  + +    HPA R+FQALRI VN+E+  L   + +A  AL  
Sbjct: 195 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA        V   +    H   F+S+T         +V 
Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 314

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RS   +LRA  R  
Sbjct: 315 HNPRSAPVRLRALQRLE 331


>gi|118618804|ref|YP_907136.1| S-adenosyl-methyltransferase MraW [Mycobacterium ulcerans Agy99]
 gi|118570914|gb|ABL05665.1| methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 395

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 18/317 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVL ++ + LL PA           V++DAT GAGG++  F        +I LDRDP 
Sbjct: 65  HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 124

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L        Y   + +DG +FDLGVSSMQ+D  +R
Sbjct: 125 ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 184

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ K  PLDMRM+     S +D++N  +   L  IL   GEE+ A RIA  I++RR  
Sbjct: 185 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 244

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L +L+ + +  + +    HPA R+FQALRI VN+E+  L   + +A  AL  
Sbjct: 245 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA        V   +    H   F+S+T         +V 
Sbjct: 305 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 364

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RS   +LRA  R  
Sbjct: 365 HNPRSAPVRLRALQRLE 381


>gi|300780824|ref|ZP_07090678.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC
           33030]
 gi|300532531|gb|EFK53592.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC
           33030]
          Length = 333

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 166/319 (52%), Gaps = 20/319 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           H+PV+ +++  LL PA     P  VI+D T GAGG++  F       +VI +DRD  A++
Sbjct: 13  HIPVMRDRMGELLRPAVERFGPHAVIVDGTLGAGGHTEYFLDTFPEASVIGIDRDGAALA 72

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSMQIDCG 121
              E +  + ++F+  +  F  L + + D                  FDLGVSSMQ+D  
Sbjct: 73  QAGERLARFGDRFAPVRGRFDCLAESLRDGTGPVFETVRAHGLAGAFFDLGVSSMQLDQE 132

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S GI+A+DV+N  +  DL  +L   G+E+ A +IA A++  R
Sbjct: 133 ERGFAYRVDAPLDMRMDPSAGITAADVLNTYSHGDLAHVLKAYGDERFAGKIASAVLDER 192

Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           + APF T+  L  L+ + +   ++    HPA R+FQALR+ VN E++ L   L    +AL
Sbjct: 193 EKAPFDTSARLVELLYRVIPAATRRTGGHPAKRTFQALRVEVNRELDALTNVLPMVAEAL 252

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ S ED+LVK+ F   +                A F+ +T      +  +
Sbjct: 253 GPGGRAVFMSYQSHEDKLVKRAFTEWTTSKTPAGLPTELPGMAAEFRMVTHGAEKASVAE 312

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           V  NRR+   ++RA  +  
Sbjct: 313 VEVNRRAAPVRVRAVEKLE 331


>gi|126695529|ref|YP_001090415.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9301]
 gi|262824906|sp|A3PAN9|RSMH_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126542572|gb|ABO16814.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 300

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 170/318 (53%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61
           M + +  +   +H  V+ ++++A L         ++  +DAT G GG+S    +  S++ 
Sbjct: 1   MQTDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLN 60

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            I LD+DPFA     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S Q+D 
Sbjct: 61  IIGLDQDPFARKSALKKLDEFKSRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQLDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I   
Sbjct: 118 PKRGFSFQKDGPLDMRMNPLLDVDAEKLIEVLNEKDLANLIYKYGDERLSRKIARKIKLD 177

Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +       T +   S+        +  +IHPATR+FQALRI VN EIE L + L+   +
Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPE 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG++ V+SFHSLEDRLVK  F                  +    +++TKK + P++
Sbjct: 238 WLLPGGIISVISFHSLEDRLVKSCFK-----------------NDQRLKNLTKKPITPSE 280

Query: 298 EDVAFNRRSRSAKLRAGM 315
           E+V  N+R+RS KLR   
Sbjct: 281 EEVELNKRARSGKLRIAQ 298


>gi|51598567|ref|YP_072755.1| hypothetical protein BG0310 [Borrelia garinii PBi]
 gi|108868281|sp|Q661V8|RSMH_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51573138|gb|AAU07163.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 296

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 167/306 (54%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +K + + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLFAFKGRITYFNDWFDNFFVNYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  D+VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAADIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKRIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRICVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RALKKI 296


>gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500]
          Length = 919

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 28/317 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVL  +VI  L   PG   +D TFG GG++        +  VIA DRDP      +  
Sbjct: 606 HKPVLFREVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHL 665

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKS-- 130
            + YK++       FS++   + +       +DG++FD GVSS+Q+D  +RGFSF+K   
Sbjct: 666 RQKYKDRLITIHGEFSRMSSLLAENGLSDLPIDGILFDFGVSSLQLDDPERGFSFRKDLY 725

Query: 131 GPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           GPLDMRM+    S     D+VN  ++K L  I+   GEE+   +IA  IV RR   P +T
Sbjct: 726 GPLDMRMNKDDSSTLSAFDIVNTFSIKRLRDIMYFYGEERHTKKIAEEIVLRRSIEPIRT 785

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L ++I+K + +   N+    +R F+ALR++VN+E +E+ +GL  AEK L+  G L+ 
Sbjct: 786 TNELVAIIEKCIPYPAANK--SISRIFRALRMYVNSETQEVKKGLLEAEKVLQPNGELVA 843

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHS+EDR+VKKFF SR  +      + P               V    +++ +N RS+
Sbjct: 844 ISFHSIEDRIVKKFFQSRKNQ----SFVFPDGDD----------PVYAAPDELEWNPRSK 889

Query: 308 SAKLRAGMRTVERSIED 324
            A LR+  RT  + + +
Sbjct: 890 PAILRSAQRTKSKPLAN 906


>gi|260655421|ref|ZP_05860909.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1]
 gi|260629869|gb|EEX48063.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1]
          Length = 303

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 22/308 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81
           +L++V+      P  +++DAT G GGYS +F        V  +D+D  A +  QE +  +
Sbjct: 1   MLQEVMDSFPRPPVGLVVDATLGLGGYSEAFLSRWPECRVAGIDQDGQARAIAQERLARW 60

Query: 82  KEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            ++F+++   F +L D      +K   GVV DLGVS++QI  G+RGFSF++ GPLDMRM+
Sbjct: 61  ADRFAVWPGNFRRLNDLMASHGEKEAAGVVVDLGVSNLQITEGERGFSFREDGPLDMRMN 120

Query: 139 -CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G++AS +VNQ    +L  I    GEE+ A  IA AI +RR  +  +TT  L  +I++
Sbjct: 121 ASEGLTASQLVNQMTEDELAGIFFRYGEERFARSIARAIARRRGQSSIETTGQLVEVIRE 180

Query: 198 TVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +  +   +   HPA R FQALRI VN+E+  L   L      L  GG+ + V++HSLED
Sbjct: 181 GMPAAAQRKANGHPARRVFQALRIAVNDELGALEDLLSQVCGLLADGGVFVAVTYHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK+      G+ + +               ++++ + P++++V  N +SRSA+LRA  
Sbjct: 241 RLVKRAMREWEGQWLGIP--------------VSRRGLTPSEDEVLSNPKSRSARLRAFE 286

Query: 316 RTVERSIE 323
           R     IE
Sbjct: 287 RRDNYQIE 294


>gi|219684724|ref|ZP_03539667.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr]
 gi|219672086|gb|EED29140.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr]
          Length = 296

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +KE+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RALKKI 296


>gi|12045077|ref|NP_072888.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|255660224|ref|ZP_05405633.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|1351515|sp|P47464|RSMH_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3844825|gb|AAC71443.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|166078718|gb|ABY79336.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 309

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 10/311 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           + +    H  VL+ +VI  LN  P    LD T G  G+S+   +      +   D D  +
Sbjct: 1   MLNNQQIHQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKES 60

Query: 71  VSCGQETMRDYKEQF--SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           ++  Q+               A F      +     DG++ DLGVSS Q++  +RGFSF+
Sbjct: 61  INFCQKLFFKNNNVVIIHDNFANFPVHLKQLSITKFDGILMDLGVSSHQLNQPNRGFSFK 120

Query: 129 KSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF- 185
             GP+DMRM  S    +A  V+     + L+ IL   G+ K    IA  + K  Q+    
Sbjct: 121 NDGPIDMRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNL 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TTQ    + +    F K    +   + FQA+RI++N+EI  L   L      LK     
Sbjct: 181 TTTQLAKVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRF 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+ FHS+E+++V+ F A  +  +      I        +Q ITKK ++P+Q+++  N R
Sbjct: 241 LVIVFHSIEEKIVRNFIAKLTSFIQPEALPIKLT---PAYQLITKKPILPSQKELELNPR 297

Query: 306 SRSAKLRAGMR 316
           SRSAKL    +
Sbjct: 298 SRSAKLFVIQK 308


>gi|225551942|ref|ZP_03772882.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1]
 gi|225370940|gb|EEH00370.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1]
          Length = 296

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 167/305 (54%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +  +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KHFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S    SAS++VN  +  DL  ++  L  E  + RI+ AI++ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISASEIVNTFSKYDLEALIYDLSNEHYSRRISKAIIEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF   S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFGGLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|111115132|ref|YP_709750.1| hypothetical protein BAPKO_0317 [Borrelia afzelii PKo]
 gi|216263935|ref|ZP_03435929.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1]
 gi|123145742|sp|Q0SNK4|RSMH_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110890406|gb|ABH01574.1| conserved hypothetical protein [Borrelia afzelii PKo]
 gi|215979979|gb|EEC20801.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1]
          Length = 296

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 168/306 (54%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDSQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +K++ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLIFKDRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKDSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIINKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYVKISKKPIIPSSDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RAVKKI 296


>gi|240047424|ref|YP_002960812.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma
           conjunctivae HRC/581]
 gi|263458177|sp|C5J697|RSMH_MYCCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239984996|emb|CAT04989.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma
           conjunctivae]
          Length = 296

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 144/301 (47%), Gaps = 16/301 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL++ +I  LN     + +D T G GG++ +     +   +I  D+D  A+   +E
Sbjct: 1   MHIPVLIDSLIENLNIREDGIYVDLTLGRGGHAAAILSKLTTGLLIVFDKDEKAIEESKE 60

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    +        F       +      VDG + DLGVSS QID G+RGFS+ K+  L
Sbjct: 61  RLLAISKNVIFIWEDFRNFAVELEKRQIYKVDGFIMDLGVSSPQIDQGERGFSYTKNARL 120

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +    A  VVN  N   LT++L   GE K A  +  AI+  R   P  TT +L 
Sbjct: 121 DMRMNQNQELDAHHVVNNYNQDLLTKVLQNYGELKNARSLTKAIIDSR---PINTTFELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI+ +   +   + +     FQA+RI VN+E+  L   L      LK    + +++FHS
Sbjct: 178 NLIRSSSPAALLRKKNIVKNVFQAIRIEVNDELGALEAFLSLFISYLKQDSQVAIITFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F S                    F     K + P+  ++  N+RS+SAKLR
Sbjct: 238 LEDRIVKMKFKSLLISSKTHLFDP----RAQQFSV---KTIKPSTSEIQLNKRSKSAKLR 290

Query: 313 A 313
            
Sbjct: 291 I 291


>gi|26553777|ref|NP_757711.1| methyltransferase [Mycoplasma penetrans HF-2]
 gi|30173058|sp|Q8EW81|RSMH_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|26453784|dbj|BAC44115.1| methyltransferase [Mycoplasma penetrans HF-2]
          Length = 312

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 12/314 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +     H+ V LE  +  LN    K+ +D TFG GG+S    K       +   D D  A
Sbjct: 3   NINSNKHISVRLEDAVDSLNIQKDKIYVDCTFGRGGHSFEILKRLSSKGKLFVFDLDLDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                     +K  F   Q  F  L++         VDG +FD GVSS  +D  +RGFSF
Sbjct: 63  KKYFDNNFSKFKNCF-FIQDNFKNLKENLAKFDISKVDGFLFDFGVSSPMLDNANRGFSF 121

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM+ +   SA +V+N  + + L +I    GE +    +   I+K R + P +
Sbjct: 122 KLDARLDMRMNQNQELSAYEVINNYSKEKLIQIFWKYGEIRNPVPVVDEIIKYRSNKPIE 181

Query: 187 TTQDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+K T    +  + H A   FQA+RI VN+E+  + + L  A   L   G +
Sbjct: 182 TTLELVDIIRKRTPIKIQREKKHFARTYFQAIRIEVNDELNSIRKALSDALNMLSKNGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           + +SFHSLE++ +K  +       +  + +  +N+    F+ I  K    +  ++  N R
Sbjct: 242 VTISFHSLEEKEIKNTYKDVLESKI-PKEVPINNSFD--FKIIKIKPKRASSSELEENNR 298

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ L+   R  E
Sbjct: 299 TRSSFLKVIERVNE 312


>gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]
 gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]
          Length = 405

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 108/340 (31%), Positives = 162/340 (47%), Gaps = 37/340 (10%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71
               +HVPVLL +VI + +    +  +D T GA G+S +  K    +   + +D DP A 
Sbjct: 66  KENDNHVPVLLGEVIDVFSSLHLRSFVDCTLGAAGHSSAIIKGHPELENYVGMDVDPVAH 125

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGVDGVVFDLGVSSMQI 118
           +  +  + D     S      + L ++               + GVD ++ DLG+SSMQ+
Sbjct: 126 AKARACIDDLMHSHSCHLKVHTFLSNFKHVKPLLAEVDPNFFNSGVDAILMDLGMSSMQV 185

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           +  +RGFS   +GPLDMRM     + A D++N     ++ R+L   GEE     + + IV
Sbjct: 186 NNPERGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEVGRVLREYGEESNWHLLQNKIV 245

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           + R      TT DL  LI+   + ++      I  ATR FQALRI VN+E+  L + L +
Sbjct: 246 QARLRGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRVFQALRIAVNDELGTLEKTLNA 305

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF-----------------ASRSGKVMAVRHMIP 277
             + L  GG L V+SFHSLEDR+VK+ F                         +    I 
Sbjct: 306 CFECLAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDGDADEEERFGRDSRNSEEMWIK 365

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           S       + +TK+ V P++E+   NRRSRSAKLR   + 
Sbjct: 366 SVVQGRNGRILTKRPVTPSEEEERLNRRSRSAKLRVVEKV 405


>gi|37522496|ref|NP_925873.1| hypothetical protein glr2927 [Gloeobacter violaceus PCC 7421]
 gi|42559444|sp|Q7NCQ1|RSMH_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|35213497|dbj|BAC90868.1| glr2927 [Gloeobacter violaceus PCC 7421]
          Length = 314

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 27/288 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H  VLLE+ I  L   PG + LDAT G GG+S +  +  S  V+ALD+D  A++  +  +
Sbjct: 30  HRSVLLEETIVGLQVHPGGLYLDATVGLGGHSEAILRTESTRVVALDQDEDALAQARLRL 89

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             + E+       F++ +    ++  DG+V DLGVSSMQ+D  +RGFS++   PLDMRM 
Sbjct: 90  APFGERVRFEHINFAEFE--PGEERFDGIVADLGVSSMQLDSPERGFSWRFESPLDMRMD 147

Query: 139 CSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             G   +A+D+VN  + + L+ +    GEE+ + RIA  IV+RR   P +TT +L++++ 
Sbjct: 148 GGGEAETAADLVNTCSAEQLSDLFWRYGEERFSRRIARRIVERR---PLRTTTELAAVVA 204

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +       IHPATR FQALRI VN E+  L   L  +   L  GG L V+SFHSLEDR
Sbjct: 205 SAIPT--RQPIHPATRVFQALRIAVNGEVAALETFLERSPDWLVPGGRLAVISFHSLEDR 262

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            VK  + +                     + +T+K +   + ++  N 
Sbjct: 263 PVKHRWRA-----------------DPRLEVLTRKTITAGEAEIQSNP 293


>gi|294660427|ref|NP_853182.2| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(low)]
 gi|298286859|sp|Q7NB79|RSMH_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|284812086|gb|AAP56750.2| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930664|gb|ADC30603.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(high)]
          Length = 313

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + LD T G GG+S          + +I  D+D  A++   +
Sbjct: 9   HYPVLLKEVIENLITTKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLKAIAHCNQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++    SL    F  L+     +    +DG + DLGVSS Q+D  DRGFS+   G L
Sbjct: 69  LFSEFNN-VSLINDNFVNLKKHLQLMQIDNIDGCLIDLGVSSYQLDQADRGFSYHSLGRL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  + A+ ++  + V +L +I+   GE K   R+  A+ K  +     T + + 
Sbjct: 128 DMRMDQNKAVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLEVVE 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            + +           HPA R FQALRI VNNE+E L + L      L  GG + +++FHS
Sbjct: 188 LIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFHS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LE+++VKK F   +  + ++ ++  +N     + +   K + PTQ ++  NRRSRSAKL 
Sbjct: 248 LEEKIVKKVFRHLA-SISSLNNLPINNELLKKYHNHFNKGLSPTQSELETNRRSRSAKLF 306

Query: 313 AGMRTVE 319
              +   
Sbjct: 307 VLEKINN 313


>gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 162/326 (49%), Gaps = 34/326 (10%)

Query: 17  IGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDR 66
              HVPV+L +V+          + +P +  +D T GA G+S +  +    +   + +D 
Sbjct: 6   TATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDV 65

Query: 67  DPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           DP A    Q  +R             +   F   ++   ++ + +   GVDG++ DLG+S
Sbjct: 66  DPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMS 125

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ++  +RGFS   +GPLDMRM     ++A D++N     ++ RIL   GEE     + 
Sbjct: 126 SMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQ 185

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQ 230
           + IVK R      +T +L  LI+KT   ++      I  ATR FQALRI VN+E++ L  
Sbjct: 186 NKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLED 245

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L +  + L  GG L V+SFHSLEDR+VK+ F                         +TK
Sbjct: 246 SLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSN--------GEDERWNGTILTK 297

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + + P++E+   NRRSRSAKLR   +
Sbjct: 298 RPITPSEEEERLNRRSRSAKLRVIQK 323


>gi|219685637|ref|ZP_03540452.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04]
 gi|219672825|gb|EED29849.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04]
          Length = 296

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +KE+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYARISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RALKKI 296


>gi|203287765|ref|YP_002222780.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1]
 gi|263445859|sp|B5RRC5|RSMH_BORRA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|201084985|gb|ACH94559.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1]
          Length = 297

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H+PVLLE VI L+       G V +D T G GG+S++        NVI ++RD   ++  
Sbjct: 6   HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++ ++ S     F      Y   +  + ++ DLG+S        RGFSF +   L
Sbjct: 66  KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVAGRGFSFLEDEKL 125

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  GISA D+VN  + + L  ++  LG E  + RI  AI++ R+    QT+++L
Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K     K  +I+PAT++FQALRI+VN+E++ L + L      L   G+L +++FH
Sbjct: 186 QRIICKAYPNVK-FKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   +                     +TKK +  + ++  +N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLTKDKYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAVKKLYE 297


>gi|313617974|gb|EFR90135.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL S4-378]
          Length = 274

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 152/269 (56%), Gaps = 6/269 (2%)

Query: 55  CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDL 111
                ++ A D+D  A+   +  + +Y ++ +  ++ F  +++ + ++G+   DG+++DL
Sbjct: 4   LNEQGHLFAFDQDQTAIDNAKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDL 63

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS Q+D  +RGFS+ +   LDMRM      +A  VVN+ + +DL RI    GEEK + 
Sbjct: 64  GVSSPQLDERERGFSYHQDAALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSK 123

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELA 229
           +IA  I +RR+  P +TT +L  +I+  +    +    HP  R+FQA+RI VN+E+  + 
Sbjct: 124 QIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVE 183

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSI 288
             L +A   LK GG + V++FHSLEDR+ K  F   +        +    + +   F+  
Sbjct: 184 DSLENALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLA 243

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           T+K +VP++E++  N R+RSAKLR   + 
Sbjct: 244 TRKPIVPSEEELEQNNRARSAKLRVIEKI 272


>gi|117928210|ref|YP_872761.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B]
 gi|263433362|sp|A0LTL5|RSMH_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117648673|gb|ABK52775.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B]
          Length = 329

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 176/309 (56%), Gaps = 13/309 (4%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60
           M++    ++     H PV++++V+ LL PA   PG +++DAT G GG++ +  +  S   
Sbjct: 1   MTADPGSSVPPAVVHRPVMVDRVVELLLPALGYPGAIVVDATVGLGGHAEAVVRAASAAT 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQ 117
           +I LD DP A+    + +  Y ++  L    F +L   + ++G+     ++FDLG+SS+ 
Sbjct: 61  LIGLDHDPHAIRLAAQRLAGYADRVQLVNVAFDRLAQVLSERGISAVAAILFDLGLSSLH 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGF++ +  PLDMRM      +A+DVVN  +  +L R+L + GEE+ A RIA AI
Sbjct: 121 IDDPARGFAYSRDVPLDMRMDPRLPRTAADVVNTYSATELARVLRVYGEERFAVRIADAI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+RR   P  +T+DLS L+++ +   ++    HPA R+FQALRI VN+E+  L + L  A
Sbjct: 181 VRRRARQPITSTRDLSELVREAIPAPARRTGGHPAKRTFQALRIEVNDELGRLERTLPVA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             AL+ GG ++V+S+HSLEDR VK+FF + +                   + +T+    P
Sbjct: 241 IAALQPGGRIVVLSYHSLEDRTVKRFFQAAASDATPAGLPTALPTARPRLRLLTRGAERP 300

Query: 296 TQEDVAFNR 304
           +  +VA N 
Sbjct: 301 SPAEVAANP 309


>gi|317402444|gb|EFV83013.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Achromobacter xylosoxidans C54]
          Length = 365

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 171/336 (50%), Gaps = 35/336 (10%)

Query: 16  TIGDHVPVLLEKVIALL-----------NPAPG-----------KVILDATFGAGGYSRS 53
              +H PVLLE  +  L              PG            V +D TFG GG+SR 
Sbjct: 1   MEFEHRPVLLEPTVDALLLADFGGKGAARSQPGDEPAAATRAERGVFVDGTFGRGGHSRE 60

Query: 54  FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGV 107
                     ++  D+DP         +     + ++    F+ + + +       VDGV
Sbjct: 61  LLGRLGPTARLVVFDKDPE-AIAVANALAAADSRVTVVHGGFATMAEELRQLGIDKVDGV 119

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS QID  +RGFSF + GPLDMRM    G + +D + QA+V ++  ++   GEE
Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A ++A AI  RR + P +TT +L+  +   V   +    HPATR+FQALRI++N E+E
Sbjct: 180 RFAFQVAKAIAARRATRPLRTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284
           ELA+ L SA   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     V
Sbjct: 239 ELARTLASALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPV 298

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            +S+ +  V+   E+VA N R+RSA LR   RT   
Sbjct: 299 LRSLGR--VLAEDEEVAANARARSAVLRVAERTATP 332


>gi|329944591|ref|ZP_08292731.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530144|gb|EGF57027.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 368

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 112/331 (33%), Positives = 167/331 (50%), Gaps = 24/331 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSRSFCK 56
            +      G H PVLL++ + LL PA              G V++D T G GG++ +  +
Sbjct: 5   QAQATDAAGRHEPVLLQRCLDLLAPAIERAAEDTSRGSAAGPVMIDCTLGMGGHTEAALE 64

Query: 57  MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVV 108
                 V+ +DRDP A++     +  + ++F   QAT+  +     D        VD V+
Sbjct: 65  RFPYLTVVGIDRDPEAITLASARLERFGDRFVAVQATYDAVDRVARDHSVSAEGTVDAVL 124

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
            DLGVSS+Q+D   RGFS+ +  PLDMRM  S G +A D++  A+  +LTRIL   GEE+
Sbjct: 125 MDLGVSSLQLDEASRGFSYARPAPLDMRMDQSSGPTAQDLLESADSAELTRILRTYGEER 184

Query: 168 QASRIAHAIVKRRQSAPF--QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
            ASRIA AIV+RR++      T      + Q     ++ +  HPA R+FQALRI VN E+
Sbjct: 185 FASRIATAIVRRREAGEPASSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAEL 244

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           + L + +  A  +L+ GG L+V S+ SLEDR+VK+     +         +   A     
Sbjct: 245 DVLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALNHGATSRAPQGLPVVPEADRPYL 304

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + IT         ++  N RS   +LRA  R
Sbjct: 305 ELITSGAEKADARELEHNPRSAPVRLRAVAR 335


>gi|203284227|ref|YP_002221967.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly]
 gi|263445883|sp|B5RLD2|RSMH_BORDL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|201083670|gb|ACH93261.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly]
          Length = 297

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 165/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H+PVLLE VI L+       G V +D T G GG+S++        NVI ++RD   ++  
Sbjct: 6   HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++ ++ S     F      Y   +  + ++ DLG+S      G RGFSF +   L
Sbjct: 66  KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVGGRGFSFLEDEKL 125

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  GISA D+VN  + + L  ++  LG E  + RI  AI++ R+    QT+++L
Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K     K  +I+PAT++FQALRI+VN+E++ L + L      L   G+L +++FH
Sbjct: 186 QRIICKAYPNVK-FKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   +                     +TKK +  + ++  +N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLTKDQYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAVKKLYE 297


>gi|227497582|ref|ZP_03927805.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832951|gb|EEH65334.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 363

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 20/328 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           H PVLL + + LL PA        V++D T G GG++    +    +  I +DRD  A++
Sbjct: 24  HTPVLLRRCLDLLAPAIEEAPAEPVMIDCTLGMGGHTEGALRRFPRLRVIGIDRDSQAIA 83

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFS 126
                +  + ++F+  +AT+ +++          +  VD V+ DLGVSS+Q+D  +RGFS
Sbjct: 84  LASARLAPFGDRFTAVRATYDEVEAVAHRFSQDGEGTVDAVLMDLGVSSLQLDDVERGFS 143

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + +  PLDMRM    G++A ++++ A   +L RIL   GEE+ A RI  AIV+RR +   
Sbjct: 144 YARPAPLDMRMDQSQGMTAQELLDGAEPGELVRILRAYGEERFAPRIVEAIVRRRSAGHP 203

Query: 186 --QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T +    + Q     ++    HPA R+FQALRI VN E++ L + +  A  +L+ GG
Sbjct: 204 VSSTQELAELVRQAVPAATRRTGGHPAKRTFQALRIAVNAELDVLERAVPRALNSLRVGG 263

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S+ SLEDR+VK+  A+ +   +            A  Q++T       + ++A N
Sbjct: 264 RLVVESYQSLEDRIVKQAIAAGTRASVPDDLPFVPEGAGAYLQALTHGAERADEAELAAN 323

Query: 304 RRSRSAKLRAGMRTV----ERSIEDDSF 327
            RS   +LRA +R        + E    
Sbjct: 324 PRSAPVRLRAAVRLRPADQAPAAEPKPL 351


>gi|168023286|ref|XP_001764169.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684609|gb|EDQ71010.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 329

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 111/329 (33%), Positives = 162/329 (49%), Gaps = 30/329 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74
             HV VLL +V+A          +D T GA G++ +  +    +   I  D DP A S  
Sbjct: 1   APHVAVLLNEVLAKFRDRRILSFVDCTLGAAGHASAILREHPELESFIGFDVDPVAHSEA 60

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRG 124
           +  ++       Q  L    F  ++  V         +GV+G++ DLG+SSMQ+D  +RG
Sbjct: 61  KPRLQAMASSDVQLHLVLTNFRNIKKAVNGADAKLVHEGVNGILMDLGMSSMQVDMAERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQS 182
           FSF K GP DMRM  S  ++A +++N+    ++ RIL   GEEK+   +A  I  KR   
Sbjct: 121 FSFMKDGPADMRMDPSASLTAEEILNKWPEAEVARILRDYGEEKRWKHLARKIVDKRLAG 180

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               T++ +  +   T       + +HPATR+FQALRI VN+E+  L   L  A   L  
Sbjct: 181 GIHSTSELVKVIGGNTFGRPGKGKAVHPATRTFQALRIAVNDELRTLETALADAFDLLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQS------------- 287
            G L V+SFHSLEDR+VK+FF   +G   AV    + S      F               
Sbjct: 241 KGRLAVISFHSLEDRIVKRFFLKAAGIGQAVEDNEMGSEPQGDDFSLRDKNVLEGSIGVV 300

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +TK+ +V   +++  N RSRSAKLR   +
Sbjct: 301 LTKRPIVAEADEINTNPRSRSAKLRVIEK 329


>gi|254819736|ref|ZP_05224737.1| S-adenosyl-methyltransferase MraW [Mycobacterium intracellulare
           ATCC 13950]
          Length = 321

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 176/313 (56%), Gaps = 18/313 (5%)

Query: 22  PVLLEKVIALLNPA-----PGKV---ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           PVLLE+ +ALL PA     P      ++DAT GAGG++  F        +I LDRDP A+
Sbjct: 2   PVLLERCVALLTPALTRHHPDGTGATLVDATVGAGGHAERFLTELPGLRLIGLDRDPTAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
              +  +  + ++ +L +  +  +        Y   + VDG++FDLGVSSMQ+D  +RGF
Sbjct: 62  DITRTRLARFSDRVTLVRTRYDGVATALAESGYAATESVDGMLFDLGVSSMQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM     ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR   P
Sbjct: 122 AYAQDAPLDMRMDPDAPLTAADILNTYDETELANILHRYGEERFARRIAAHIVRRRARQP 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F +T DL +L+ + +  + +    HPA R+FQALR+ VN+E++ L   L +A  AL  GG
Sbjct: 182 FASTADLVALLYEAIPAAARRTGGHPAKRTFQALRVAVNDELDSLRAALPAALDALAVGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK+ FA        V   +    H   F+++T+        ++  N
Sbjct: 242 RIVVMTYQSLEDRIVKRLFAEAVASRTPVDLPVELPGHQPRFRALTQGAGRADATEIERN 301

Query: 304 RRSRSAKLRAGMR 316
            RS + +LRA  R
Sbjct: 302 PRSAAVRLRALQR 314


>gi|308374510|ref|ZP_07667801.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis
           SUMu006]
 gi|308341663|gb|EFP30514.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis
           SUMu006]
 gi|323719262|gb|EGB28406.1| hypothetical protein TMMG_01445 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 328

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 168/316 (53%), Gaps = 18/316 (5%)

Query: 24  LLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           + ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP A+  
Sbjct: 1   MAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTALDV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSF 127
            +  +  + ++ +L    +  L   + + G       DG++FDLGVSSMQ+D  +RGF++
Sbjct: 61  ARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGFAY 120

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  +   +A+D+VN  +   L  IL   GEE+ A RIA  IV+RR   PF 
Sbjct: 121 ATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFT 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T +L +L+ + +    +    HPA R+FQALRI VN+E+E L   + +A  AL  GG +
Sbjct: 181 STAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGRI 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++  N R
Sbjct: 241 AVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERNPR 300

Query: 306 SRSAKLRAGMRTVERS 321
           S   +LRA  R   R+
Sbjct: 301 STPVRLRALQRVEHRA 316


>gi|290969165|ref|ZP_06560690.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780671|gb|EFD93274.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1
           str. 28L]
          Length = 310

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 161/314 (51%), Gaps = 26/314 (8%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           HV VL E+ +A  L P    + +D T G GG++ +                A+  G +  
Sbjct: 5   HVSVLREETVAAVLGPK-NGIYVDCTLGGGGHAATLAAQL--------QEEALVIGLDRD 55

Query: 79  RDY-----------KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRG 124
           RD              +  L Q  F  L D + +  +     ++FDLGVS  Q+D  +RG
Sbjct: 56  RDALRAAAARLQGVPCRTRLVQRNFQYLADVLQELHLPYVDGIMFDLGVSGYQLDTPERG 115

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ + GPLDMRM     + AS VVN  + + L  ++   GEE+ A RIA  IV+ R+  
Sbjct: 116 FSYMQDGPLDMRMDQRCAVPASTVVNTYSEEALYSLIKAYGEERWAKRIAAFIVRARRQK 175

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF  T +L  +I++ +    + +  HPA R+FQALRI VNNE+  L   L +A + LK G
Sbjct: 176 PFSRTAELVYVIKQAIPAGARRDGPHPAKRTFQALRIEVNNELGILHDALTTAVQHLKPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++FHSLEDR+ K+ F   +   +    +     H      + ++VV P+ ++VA 
Sbjct: 236 GKIGVITFHSLEDRITKQTFKELATDCICPPDLPVCTCHHRASIRVRRQVVTPSPQEVAD 295

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSAKLR   R
Sbjct: 296 NPRARSAKLRVAER 309


>gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
           27560]
 gi|149736554|gb|EDM52440.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
           27560]
          Length = 365

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + +++++  L+  PG++ LDAT G GG++    K      ++  LD DP  
Sbjct: 62  STPAGMHISICVKEILEFLDIKPGQIGLDATLGYGGHTLQMLKKLDRKGHIYGLDIDPIE 121

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
           +    + + D     +  +     F  +     +    D ++ DLGVSSMQID  +RGF+
Sbjct: 122 IKKTTKRLADKGFGKDVLTTINTNFRNIDQVAKEHGPFDFILADLGVSSMQIDNPERGFT 181

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAP 184
           ++  GPLD+R++   GISA++ +   +V +L  +     +E  A  IA AIV R + +  
Sbjct: 182 YKYEGPLDLRLNPEKGISAAERLRDISVDELEGMFIENSDEPYAYEIAKAIVARNRTNNK 241

Query: 185 FQTTQDLSSLIQK--TVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT DL ++I+K   V   K  +        R FQALRI VNNE E L   L     AL
Sbjct: 242 IETTTDLKNVIEKSLCVVPQKERKEAVKKSCARVFQALRIDVNNEFEVLYDFLEKLPDAL 301

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
            +GG + V++FHS EDRLVKK F +   + +                 + K V+ P+ E+
Sbjct: 302 ASGGRVAVLTFHSGEDRLVKKSFKALQKQGVYSE--------------VAKDVIRPSAEE 347

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 348 CNTNPRARSTKMRWAIK 364


>gi|318057546|ref|ZP_07976269.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actG]
 gi|318081147|ref|ZP_07988479.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actF]
          Length = 343

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/295 (37%), Positives = 168/295 (56%), Gaps = 10/295 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
             G HVPV+L + + LL PA   PG V++D T G GG+S +         ++ALDRD  A
Sbjct: 27  AEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEA 86

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+  L  A + +L D +       V G++FDLGVSSMQ+D  DRGF++
Sbjct: 87  LRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAY 146

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF 
Sbjct: 147 AQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFA 206

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG +
Sbjct: 207 RSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRI 266

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            V+++HSLEDRLVK+  ++ +         +    +    + +T+   +P +E+V
Sbjct: 267 AVLAYHSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 321


>gi|224531783|ref|ZP_03672415.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116]
 gi|224511248|gb|EEF81654.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116]
          Length = 296

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     ++I ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDSIYIDSTLGEGTHAKAILEKYDFLSLIGIERDFQILQRA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++++ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLIFEDRITYFNDWFDNFFANYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLEELIYDLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIINKVYPFSK-AKINPATKTFQALRIYVNDELTRLKRSLPLWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSFD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           RA  +
Sbjct: 291 RAVKK 295


>gi|45657732|ref|YP_001818.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|88911699|sp|P62472|RSMH_LEPIC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|45600972|gb|AAS70455.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 334

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/327 (33%), Positives = 167/327 (51%), Gaps = 34/327 (10%)

Query: 20  HVPVLLEKVIALLN---PAPGKV-ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           H  V  ++++ +          V  LD T G GG+S  F K    S +I  DRDP  +S 
Sbjct: 21  HYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLKEFPNSRIILCDRDPIMLSR 80

Query: 74  GQETMRDYKEQFSLFQATFSQLQD-----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               + D+ E+    Q  FS++       Y  D+   G++ DLG+S+  +    RGFSF+
Sbjct: 81  ALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILLDLGISTFHLFHSGRGFSFR 140

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +S PLDMR++ + G SA +++N      L  I    GEE+ + +IA  IV+ R+     T
Sbjct: 141 ESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERWSKKIAEVIVETRKQNSIST 200

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L++L+ K +         HPATR FQALRI VN E+  +  GL+     L+ GG++ 
Sbjct: 201 TFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAHIENGLKLLLDLLRLGGVIQ 260

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK  F   +                  F+ +TKK ++P+QE++  N  S
Sbjct: 261 VISFHSLEDRIVKNSFRDYA--------------KQNGFELLTKKPILPSQEEIDENPAS 306

Query: 307 RSAKLRAGMRTV-------ERSIEDDS 326
           RSAKLR   +T         ++ E++ 
Sbjct: 307 RSAKLRILRKTKSVDKKYRNKNFEEEE 333


>gi|227548905|ref|ZP_03978954.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079033|gb|EEI16996.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 345

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/334 (33%), Positives = 174/334 (52%), Gaps = 23/334 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNV 61
           M   +    G HVPV+ +++  LL PA      G VI+DAT GAGG++  F +   G++V
Sbjct: 13  MDFRVDPNHG-HVPVMRDRMADLLAPAVEVFGAGAVIVDATLGAGGHTEHFLRRFPGASV 71

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFD 110
           I +DRDP A+    E +  + ++F   QA F  +   + D            GV G +FD
Sbjct: 72  IGVDRDPAALRDATERLAPFADRFVGVQARFDDIGTAIRDRDGAIFDAARTHGVAGALFD 131

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSSMQ+D  +RGF+++   PLDMRM  +   +A+DV+N  +  +L RIL   G+E+ A
Sbjct: 132 LGVSSMQLDQEERGFAYKVDAPLDMRMDPTTTLTAADVLNTYSHGELARILKTYGDERFA 191

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEEL 228
            +IA  I+K R+ APF+ +  L  L+ + +   ++    HPA R+FQALRI VN E++ L
Sbjct: 192 GKIASHILKEREKAPFERSARLVELLYQAIPAATRRTGGHPAKRTFQALRIEVNGELDAL 251

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
              +      L  GG  + +S+ SLED++VK    S +         +      A F+ I
Sbjct: 252 RAVIPVITDLLGPGGRAVFMSYQSLEDKIVKNALTSLTTSTTPTGLPMDLPGTAATFRWI 311

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGM--RTVER 320
           T      ++ ++  N R+   ++R     RT   
Sbjct: 312 THGAEKASEAEIDQNSRAAPVRVRGVEKLRTDNP 345


>gi|254527132|ref|ZP_05139184.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9202]
 gi|221538556|gb|EEE41009.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9202]
          Length = 300

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 171/318 (53%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61
           M + +  +   +H  V+ +++IA L         ++  +DAT G GG+S +  +  S + 
Sbjct: 1   MQTDLSDSSFFNHKSVMTDEIIASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELN 60

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            I LD+DPFA     + +  +K +  +  + F+   D+VP + V  V+ DLGV+S QID 
Sbjct: 61  IIGLDQDPFARISASKKLDKFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I   
Sbjct: 118 PKRGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLD 177

Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +       T +   S+        +  +IHPATR+FQALRI VN EIE L + L++  +
Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPE 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG++ ++SFHSLEDRLVK  F                  +    +++TKK + P++
Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSSFK-----------------NDQRLKNLTKKPITPSE 280

Query: 298 EDVAFNRRSRSAKLRAGM 315
           ++V FN+R+RS KLR   
Sbjct: 281 QEVEFNKRARSGKLRIAQ 298


>gi|291519055|emb|CBK74276.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4]
          Length = 289

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 139/284 (48%), Gaps = 12/284 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
              +H  VLL + +  LN  P  + +D T G GG+S          ++   D+D  A+  
Sbjct: 1   MEFNHYSVLLYETVDNLNIKPDGIYVDGTLGGGGHSFEIASRLTTGHLYGFDQDTDALKA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  Y ++ +   + +  +++ + +     VDG++ DLGVSS Q+D  DRGF+++  
Sbjct: 61  AGERLACYGDKVTRIHSNYEFMKERLAELGVTKVDGIMLDLGVSSFQLDEADRGFTYRVD 120

Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
                      + ++A+D+VN  + +DLTR+L   GEEK + +I   I+K R+ AP  T 
Sbjct: 121 DAPLDMRMDKDNPMTAADIVNTYSAEDLTRVLFTYGEEKFSKQIVKNIIKEREKAPILTA 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I +++       + HP+ R++QALRI +N E+  L   +      L  GG L +
Sbjct: 181 GQLNKIIAESIPKKAQVGQGHPSKRTYQALRIELNRELTVLEDHIDDMIDLLNPGGRLCI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           ++FHSLEDR+ K  F          ++           + I  K
Sbjct: 241 ITFHSLEDRITKVAFKRNEDPCTCPKNFPVCVC----GKKIKGK 280


>gi|160902330|ref|YP_001567911.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95]
 gi|262824808|sp|A9BHH9|RSMH_PETMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160359974|gb|ABX31588.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95]
          Length = 286

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 26/300 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRD 80
           ++E+V++ +      + +D T G GG+ ++        + VI +D D   +   +E ++D
Sbjct: 1   MVEEVLSYMITNKDGIYVDCTAGEGGHIKAILGYTNNKAKVIGVDVDYEVLEIAEERLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +   L ++++  +   +       VDG + DLGVS+ Q+   +RGFSF K  PLDMRM
Sbjct: 61  LSDNVVLIKSSYKNIDMVLRGLGIDKVDGFLMDLGVSTFQLKGENRGFSFTKDEPLDMRM 120

Query: 138 SCSGIS-ASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQDLSSLI 195
                  A+ +VN  + +DL RI+   GEEK+    I+ +IVK R     Q   D     
Sbjct: 121 DVQSEKDAAYIVNNYSQEDLRRIIFEYGEEKRFAHSISKSIVKNRPINTTQELVDAIRKG 180

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  + +R H AT++FQALRI VN E++ + + L   E  LK    + V++FHSLED
Sbjct: 181 LPASQVHERHR-HFATKTFQALRIEVNEELKNIEETLSKFESFLKVKARVAVITFHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FF +                    +  +T K ++PTQE++  N RSRSAKLR   
Sbjct: 240 RIVKNFFKNNE-----------------RYNFLTPKPILPTQEEIKHNPRSRSAKLRVVE 282


>gi|145350048|ref|XP_001419435.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579666|gb|ABO97728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 314

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 25/314 (7%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82
           ++V+        +  +D T GAGG++R+  +      + +  D D  A +  +  +   +
Sbjct: 2   DEVLEAFRDVRARTHVDGTLGAGGHARAMIEAHEEMEHFVGFDVDASAHALARPRLERAR 61

Query: 83  E-----------QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                       + SL +A F ++++ +      GVD VV DLGVSSM +D  +RGFSF 
Sbjct: 62  AATRGDEATTTLRLSLVEANFRRMREALRALDVDGVDSVVLDLGVSSMHLDRAERGFSFM 121

Query: 129 KSGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM  S  + ++ +VN    +++ RIL   GEEK    +A  I +RR     +T
Sbjct: 122 NDGPLDMRMGESATTTAEEIVNAWPEEEIGRILREYGEEKHWRLLARRICERRAEKEIRT 181

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L   I       K   IHPATR+FQ +RI VN+E+  +   + +A +AL+ GG L +
Sbjct: 182 TRELVDAIGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEALRPGGRLAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +SFHSLED +VK+ F   +G+         R+M    A P + + IT+K  VPT  ++  
Sbjct: 240 ISFHSLEDSIVKRRFRHFAGRAEPPSEEVNRYMPQPEAPPKIVKLITRKPKVPTSAEIDV 299

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   +
Sbjct: 300 NVRSRSAKLRVCEK 313


>gi|296129435|ref|YP_003636685.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM
           20109]
 gi|296021250|gb|ADG74486.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM
           20109]
          Length = 333

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 10/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKM--GSNVIA 63
           M          HVPVLLE+ + LL PA      V++D T G GG++    +      V+ 
Sbjct: 1   MDEQTADAASRHVPVLLERCVELLAPALAAPGAVLVDCTLGMGGHTEGVLRAIEHVRVVG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +DRDP A++   E +  + E+F+   A + ++ D V      GV GV+ DLGVSS+Q+D 
Sbjct: 61  IDRDPQALALASERLAPFGERFTGVHAVYDEIGDVVERLGLPGVQGVLMDLGVSSLQLDE 120

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGF++    PLDMRM  + G +A+DV+N  + +D+ R+L + GEE+ A+RIA  +V+ 
Sbjct: 121 AERGFAYAHDAPLDMRMDPTTGPTAADVLNTYDERDIARVLRVYGEERFAARIARGVVRF 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P   T +L  +++  V   ++    HPA R+FQALRI VN E+  L + L +A   
Sbjct: 181 RERTPLTRTSELVDIVRAGVPAATRRTGGHPAKRTFQALRIEVNGELAALERALPAAIDV 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V S+ SLEDRLVK+  A+ +         +    H    + +T+      + 
Sbjct: 241 LAVGGRIVVESYQSLEDRLVKRALAAGATSSAPPDLPVEPVTHAPYLRLLTRGAEEADEA 300

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N R++S +LRA  R
Sbjct: 301 ELARNPRAQSVRLRAAER 318


>gi|321460668|gb|EFX71708.1| hypothetical protein DAPPUDRAFT_111399 [Daphnia pulex]
          Length = 322

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/321 (35%), Positives = 163/321 (50%), Gaps = 27/321 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDY 81
           + ++V+ +  P   +  LD TFGAGG++R          V  LDRDP A     +   + 
Sbjct: 1   MHKEVLEMFQPQQNQKFLDLTFGAGGHTRKLLSSARNITVYTLDRDPLAYELAIQLASET 60

Query: 82  KE-QFSLFQATFSQLQDYVPDKGVDGVV----FDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              Q       FS L   + +            D G SSMQ D  +RGFS  K+GPLDMR
Sbjct: 61  TNGQVVPLLGKFSDLPQLLSNPETCNFFDGILVDCGCSSMQFDTRERGFSLSKNGPLDMR 120

Query: 137 MSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191
           M  +      SA D++   +   L+R+L + GEEKQA +IA AI++ R      QTT +L
Sbjct: 121 MDQNRLENQPSAKDILANIDEDSLSRVLKVYGEEKQAKKIARAIIEARYLFKSLQTTHEL 180

Query: 192 SSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T   S          H AT++FQALRI VN+E+ EL   +R A + LK GG L+
Sbjct: 181 AQLIESTCGLSTRTDKLQRPSHVATKTFQALRILVNDELNELEFAVRYAHRTLKIGGKLV 240

Query: 247 VVSFHSLEDRLVKKFFAS----------RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            ++FHSLEDR+VK+                     +  ++P       ++SI K V+VP+
Sbjct: 241 TITFHSLEDRIVKEHLHGFDYSAKSEEIYKNYGRQLDPLLPLADMERKWESINKHVLVPS 300

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            E+V  N RSRSAKLRA ++ 
Sbjct: 301 DEEVNGNPRSRSAKLRAAIKI 321


>gi|255076257|ref|XP_002501803.1| MraW methylase/RNA recognition motif protein [Micromonas sp.
           RCC299]
 gi|226517067|gb|ACO63061.1| MraW methylase/RNA recognition motif protein [Micromonas sp.
           RCC299]
          Length = 744

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 143/326 (43%), Gaps = 19/326 (5%)

Query: 12  AIHHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           A     G H P +L + IA L  P P    +D TFG GG++R           + A D D
Sbjct: 354 ATEQAFGTHTPAMLRETIAALVKPDPNGTYVDGTFGRGGHTRGILAALGPNGRLHAFDMD 413

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGF 125
           P A+   ++ +     +F++  A F  +   +        GV  DLG+SS Q D   RGF
Sbjct: 414 PEAIKEAKK-LEAEDSRFTIHHAPFGCMDTVLKPLGVTCSGVFLDLGISSPQFDDESRGF 472

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQ 181
             ++ GPLD+R     G+ AS+ + + +  +L RIL   GE        RIA A+     
Sbjct: 473 RPEQDGPLDLRFDVTQGVPASEFLERVDRDELVRILHEYGETADPVAARRIADAVCLAVA 532

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                +T    + +       +   +HPA  +FQALRI +N E +E+ +G+R+A + +  
Sbjct: 533 EERLPSTTKAFAALVAAAKGKEYQAMHPAKLTFQALRIHLNQEFDEMRRGMRAAAEVMID 592

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS--------GKVMAVRHMIPSNAHPAVFQSITKKVV 293
           GG L V+++   E  ++  F              K M   H    NA P V+        
Sbjct: 593 GGRLGVLTWKHSECAILVDFHRHFEVVQPTQPLLKWMRSNHPEKENALPTVWGLTMDDAQ 652

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVE 319
            P++ ++  N RSRSA L    +   
Sbjct: 653 RPSEREMRDNSRSRSAILHVLRKVDA 678


>gi|189219430|ref|YP_001940071.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum
           V4]
 gi|263456445|sp|B3DVX0|RSMH_METI4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189186288|gb|ACD83473.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum
           V4]
          Length = 316

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 153/309 (49%), Gaps = 10/309 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
              +  H+PV+L++ +   +P   +  +D TFG GG++ +    G  V+ALD D  A   
Sbjct: 5   TEEVESHIPVMLKEFLKHCSPKRDEQWIDGTFGYGGHTTALLDKGCKVLALDTDEDAQKR 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +++  E+F  F+  FS++ +         VDG++ DLGVS  Q+    RGFSFQ  
Sbjct: 65  A-EILKEKGEEFYFFRKNFSEMAEACFQMGWTAVDGILLDLGVSLGQLKDPKRGFSFQFP 123

Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
                         + + ++N  + + L ++  +    K++ ++A+ IV+ R + P +  
Sbjct: 124 DAPLDMRMDRTRERTGAALLNTLSKEQLVQLFSVACNMKESQKLANEIVRFRSTGPIKKV 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D   ++ +       ++I+ ATR F ALRI VN E+E L + LR   K LK GG + V+
Sbjct: 184 GDFLEIVTRA--RLLKSKINAATRPFLALRIAVNEELEHLEKALREGTKLLKGGGRIAVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHS EDR+VK+F  S              N     F  + +  V+ + E+   N RSRS
Sbjct: 242 SFHSAEDRIVKEFMRSHCLPKKGEGVAEEENHREMFFYKVER--VLVSLEERKNNPRSRS 299

Query: 309 AKLRAGMRT 317
           A+LR   + 
Sbjct: 300 ARLRIAWKI 308


>gi|87300864|ref|ZP_01083706.1| methyltransferase [Synechococcus sp. WH 5701]
 gi|87284735|gb|EAQ76687.1| methyltransferase [Synechococcus sp. WH 5701]
          Length = 299

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 26/313 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
               DH+PVL   V+A     PG   +LD T G GG+S           +I LD+DP A+
Sbjct: 2   PKTFDHLPVLAAAVVAGFTDLPGEGTLLDVTVGGGGHSALLLAAHPGLRLIGLDQDPAAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E +  + ++ +L  + F+    Y P + + GV+ DLGVSS Q+D  +RGFSF+  G
Sbjct: 62  AAAAERLEPFADRVTLVPSNFAN---YAPSEPLVGVLADLGVSSPQLDRPERGFSFRLDG 118

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TT 188
           PLDMRM+   G +A++++++   KDL  ++   GEE+ + RIA  IV+ R        T 
Sbjct: 119 PLDMRMNSAEGETAAELMDRVEEKDLADLIYAYGEERLSRRIARRIVEARPWHGSSRGTA 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
                +       +++ RIH ATR+FQALRI VN+E+  L + L +A   L  GGL  V+
Sbjct: 179 ALAYLVAGCYPPKARHGRIHAATRTFQALRIAVNDELGALERLLHNAPDWLMPGGLFGVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                       + +T+K VV  +++   N RSRS
Sbjct: 239 SFHSLEDRRVKAAF-----------------LADDRLERLTRKPVVADEQEAERNPRSRS 281

Query: 309 AKLRAGMRTVERS 321
           AK R   R     
Sbjct: 282 AKFRLARRRSANF 294


>gi|124024411|ref|YP_001018718.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9303]
 gi|262824953|sp|A2CD93|RSMH_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123964697|gb|ABM79453.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 310

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 163/318 (51%), Gaps = 31/318 (9%)

Query: 10  SSAIHHTIG-DHVPVLLEKV---IALL--NPAPGKVILDATFGAGGYSRSFCKMGS--NV 61
            S+I+   G  H+ V+ + V   +A L      G +++DAT G GG+S    +      +
Sbjct: 3   DSSINSDSGFKHLSVMADAVSQPVAALPAELLDGGLMIDATLGGGGHSALLLERHPDLRL 62

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           I LD+DP A +   E +  + ++  +    F    D+ P +    V+ DLGVSS Q+D  
Sbjct: 63  IGLDQDPTARAAAAERLALFGDRVKIVATNFV---DFSPAEPAVVVMADLGVSSPQLDVA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-- 178
            RGFSF+  GPLDMRM+   G +A++++ +    +L  ++   GEE+ + RIA  I    
Sbjct: 120 KRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDL 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             Q     T     ++       ++  RIHPATR+FQALRI VN+E++ L + L+ A   
Sbjct: 180 AEQGPYAGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELDALDRFLQKAPDW 239

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GGLL V+SFHSLEDR VK  F                       + +T+K +V ++ 
Sbjct: 240 LVPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEM 282

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N RSRSAK R   R
Sbjct: 283 EIAANPRSRSAKCRFARR 300


>gi|24214745|ref|NP_712226.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|42559478|sp|Q8F4J6|RSMH_LEPIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24195744|gb|AAN49244.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 334

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/327 (33%), Positives = 166/327 (50%), Gaps = 34/327 (10%)

Query: 20  HVPVLLEKVIALLN---PAPGKV-ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           H  V  ++++ +          V  LD T G GG+S  F K    S +I  DRDP  +S 
Sbjct: 21  HYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLKEFPNSRIILCDRDPIMLSR 80

Query: 74  GQETMRDYKEQFSLFQATFSQLQD-----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               + D+ E+    Q  FS++       Y  D+   G++ DLG+S+  +    RGFSF+
Sbjct: 81  ALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILLDLGISTFHLFHSGRGFSFR 140

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +S PLDMR++ + G SA +++N      L  I    GEE+ + +IA  IV+ R+     T
Sbjct: 141 ESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERWSKKIAEVIVETRKQNSIST 200

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L++L+ K +         HPATR FQALRI VN E+  +  GL+     L+ GG++ 
Sbjct: 201 TFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAHIENGLKLLLDLLRLGGVIQ 260

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK  F   +                  F+ +TKK + P+QE++  N  S
Sbjct: 261 VISFHSLEDRIVKNSFRDYA--------------KQNGFELLTKKPIFPSQEEIDENPAS 306

Query: 307 RSAKLRAGMRTV-------ERSIEDDS 326
           RSAKLR   +T         ++ E++ 
Sbjct: 307 RSAKLRILRKTKSVDKKYRNKNFEEEE 333


>gi|302788300|ref|XP_002975919.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii]
 gi|300156195|gb|EFJ22824.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii]
          Length = 373

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 26/315 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H PVL+ + +        K  LD T GAGG++    +    +   + +D DP A+   +
Sbjct: 65  PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124

Query: 76  ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           + + D      +  LF A F  ++         + ++G DG++ DLG+SSMQ+D  +RGF
Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184

Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           S+   GPLDMRM  S   G++A  + N  +  ++ RIL   GEE +   +A  IV  R +
Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              +TT+DL+S++       +  R  HPA R+FQALRI VN+E++ L   +  A   L  
Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGHASSCLAP 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+SFHSLEDR+VK  F   S         +  +     F  +T   +     ++ 
Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKADLAFMLLTTSPITADAAEIE 355

Query: 302 FNRRSRSAKLRAGMR 316
            N R RSAK+R   R
Sbjct: 356 KNSRCRSAKMRVIQR 370


>gi|297170224|gb|ADI21262.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [uncultured myxobacterium
           HF0010_08B07]
          Length = 285

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 37  GKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
             + LD TFG GG+++           +I+ D D  A+   +       + F   +  FS
Sbjct: 9   NGLYLDCTFGRGGHTKKILDKLSSEGQLISFDLDDDAMKVAKNI---DNKNFKFIKTNFS 65

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQAN 152
            + DYV D  + GV+ D GVSS Q+D  +RGFSFQ  GPLDMR +     +  D++   +
Sbjct: 66  MIDDYVEDDSLSGVLIDCGVSSPQLDEPERGFSFQTKGPLDMRFNQEQKLTCKDIIENYS 125

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
            K++  IL   GEEK++ RIA  IVK+R+      T  L+ +I+     +   + HPAT+
Sbjct: 126 EKEIATILWKFGEEKESRRIAKLIVKQREQNVIDNTLVLAEIIKT--AKTVKTKKHPATK 183

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           SFQALR+ VN+E E L   L   +  L   G L++++FHSLEDR+ K+ F  +       
Sbjct: 184 SFQALRMAVNSEFENLTTCLDRIKDKLTKSGKLVIITFHSLEDRIAKQTFKPKINFHEKN 243

Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +I  +     F+    K++ P+QE+++ N R+RSAK+R   +
Sbjct: 244 LPLIYEDVSDK-FKI--SKIIYPSQEEISMNPRARSAKMRIIEK 284


>gi|291563183|emb|CBL41999.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SS3/4]
          Length = 360

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 152/325 (46%), Gaps = 28/325 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + + +++  L+  PG   LDAT G GG++    K      ++  LD DP  
Sbjct: 50  STPAGMHISICVNEILDFLDIRPGMQGLDATLGYGGHTTEMLKKLEGQGHMYGLDVDPIE 109

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
           +   +  +++     +  ++ Q  F+ +   VP+ G  D V+ DLGVSSMQID  +RGF+
Sbjct: 110 IVKTKARLKERGFDEDILTVKQMNFADIDKLVPETGLFDFVLADLGVSSMQIDNPERGFT 169

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  GPLD+R++   GISA++ + Q +++++  +     +E  A  IA  I KR +   +
Sbjct: 170 YKADGPLDLRLNPEKGISAAERLKQMDMEEIAGMFVENSDEPYAEEIAREIAKRNRKRQY 229

Query: 186 QTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             T      + +T       +           R FQALRI VN E E L   L      L
Sbjct: 230 IETTTGLKEVIETTLSFIPEKERKEAVKKSCQRCFQALRIDVNQEFEVLESFLTKLPGIL 289

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG   +++FHS EDRLVK +F       +                 +   V+ P+ E+
Sbjct: 290 APGGRAAILTFHSGEDRLVKYYFKEGKKDGLYSD--------------VANDVIRPSAEE 335

Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324
              N R+RS K+R  +R  E S  +
Sbjct: 336 CQRNPRARSTKMRWAIREGENSHRN 360


>gi|116515077|ref|YP_802706.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
 gi|122285527|sp|Q057T6|RSMH_BUCCC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116256931|gb|ABJ90613.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 307

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 104/318 (32%), Positives = 167/318 (52%), Gaps = 37/318 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN     + +D TFG GG+++   K       + ++D+D  +V+ G++
Sbjct: 3   HIPVLLKETINALNIKKNGIYIDGTFGNGGHTKEILKYLGQSGKLYSIDQDIKSVNKGKK 62

Query: 77  TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 ++FS+    FS     +      K +DG++ DLG+SS QI+  DRGFSF K+G 
Sbjct: 63  IK---DKRFSIIFGKFSKKIPYIYKKNKKKKIDGILLDLGISSNQINQNDRGFSFMKNGL 119

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GI A   + +++ K++ ++L   GEE+ + +I++AI  R +      T DL
Sbjct: 120 LDMRMNNTTGIPAWKWLKKSSQKEIEKVLRKYGEERYSKKISYAIYNRNKKKTITQTLDL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +      + HPATR+FQA+RI +NNEI+EL + L+ + K LK    L+++ FH
Sbjct: 180 VQIIKKAIPKIDKYK-HPATRTFQAIRIHINNEIKELKKTLKISIKILKKKRRLVIICFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------------KVVVPTQ 297
           SLE+R+VK FF          R +  +       ++                 K      
Sbjct: 239 SLENRIVKNFFKKHGKTFFIPRGLPITEKKIKKIENKKIKIIKKIKPKKTEIQK------ 292

Query: 298 EDVAFNRRSRSAKLRAGM 315
                N+RSRSA LR   
Sbjct: 293 -----NKRSRSAILRIAE 305


>gi|187479357|ref|YP_787382.1| S-adenosyl-methyltransferase MraW [Bordetella avium 197N]
 gi|123738495|sp|Q2KVE4|RSMH_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115423944|emb|CAJ50496.1| S-adenosyl-methyltransferase [Bordetella avium 197N]
          Length = 355

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 119/348 (34%), Positives = 174/348 (50%), Gaps = 31/348 (8%)

Query: 16  TIGDHVPVLLEKVIALL-------------NPAPG---------KVILDATFGAGGYSRS 53
              +H PVLLE  +  L              P             + +D TFG GG+SR 
Sbjct: 1   MKFEHRPVLLEPTVDALLQADFGGRGASRARPRDEAAALTRQATGIFVDGTFGRGGHSRE 60

Query: 54  FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGV 107
                     ++  D+DP       + +     + ++    F+ + +       + +DGV
Sbjct: 61  LLGRLGPQARLVVFDKDPE-AIAVAQALAAEDARVTVVHGGFATMTEELAARGIERIDGV 119

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS QID  DRGFSF + GPLDMRM    G + +D + QA+V+++  ++   GEE
Sbjct: 120 MLDLGVSSPQIDDADRGFSFMREGPLDMRMDTSRGPTVADWLAQASVEEMREVIADYGEE 179

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A ++A AI  RR + P  TT +L+  +   V   +    HPATR+FQALRI++N E+E
Sbjct: 180 RFAFQVAKAIAARRATRPLHTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
           ELA+ L SA + L  GG L V+SFHSLEDR+VK+  A+ +    A   +    +      
Sbjct: 239 ELARALASAIELLVPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHPRLPLRESELPQPI 298

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLP 334
             T   VV    +VA N RSRSA LRA  RT +      +   +P +P
Sbjct: 299 LQTLGKVVADDAEVAGNARSRSAILRAAERTSQPLPATGAEDFVPAVP 346


>gi|302770288|ref|XP_002968563.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii]
 gi|300164207|gb|EFJ30817.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii]
          Length = 373

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 26/315 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H PVL+ + +        K  LD T GAGG++    +    +   + +D DP A+   +
Sbjct: 65  PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124

Query: 76  ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           + + D      +  LF A F  ++         + ++G DG++ DLG+SSMQ+D  +RGF
Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184

Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           S+   GPLDMRM  S   G++A  + N  +  ++ RIL   GEE +   +A  IV  R +
Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              +TT+DL+S++       +  R  HPA R+FQALRI VN+E++ L   +  A   L  
Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGQASSCLAP 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+SFHSLEDR+VK  F   S         +  +     F  +T   +     ++ 
Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKVDLAFMLLTTSPITADAAEIE 355

Query: 302 FNRRSRSAKLRAGMR 316
            N R RSAK+R   R
Sbjct: 356 KNSRCRSAKMRVIQR 370


>gi|293603437|ref|ZP_06685862.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC
           43553]
 gi|292818139|gb|EFF77195.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC
           43553]
          Length = 365

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 115/352 (32%), Positives = 175/352 (49%), Gaps = 36/352 (10%)

Query: 16  TIGDHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRS 53
              +H PVLLE  +  L                  P         V +D TFG GG+SR 
Sbjct: 1   MEFEHRPVLLEPTVDALLLPDFGGKGAARSHSQIEPDTATRADRGVFVDGTFGRGGHSRE 60

Query: 54  FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGV 107
                     ++  D+DP         +     + ++    F+ + + +       VDGV
Sbjct: 61  LLGRLGKSARLVVFDKDPE-AIAVANALAATDSRVTVVHGGFATMAEELQQLGIDKVDGV 119

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS QID  +RGFSF + GPLDMRM    G + ++ + QA+V ++  ++   GEE
Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVAEWLAQASVDEMREVIADYGEE 179

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A ++A AI  RR + P  TT +L+  +   V   +    HPATR+FQALRI++N E+E
Sbjct: 180 RFAFQVAKAIAARRATRPLCTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284
           ELA+ L +A + L  GG L V+SFHSLEDR+VK+   + +    A   +    S     +
Sbjct: 239 ELARTLAAALELLAPGGRLAVISFHSLEDRMVKQCIVAAARPAAAHARLPLRESEMPQPI 298

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336
            +S+ +  V    ++VA N R+RSA LR   RT E  +  +      ++ +L
Sbjct: 299 LRSLGR--VQAEDDEVAGNARARSAVLRVAERT-ETPLPPEGGFAFVKIGSL 347


>gi|311103994|ref|YP_003976847.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758683|gb|ADP14132.1| S-adenosyl-methyltransferase MraW [Achromobacter xylosoxidans A8]
          Length = 364

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/352 (33%), Positives = 177/352 (50%), Gaps = 36/352 (10%)

Query: 16  TIGDHVPVLLEKVIALLNP----------------------APGKVILDATFGAGGYSRS 53
              +H PVLLE  +  L                        A   V +D TFG GG+SR 
Sbjct: 1   MEFEHRPVLLEPTVDALLLPDFGGKGATRSHQQAGPATATRAEDGVFVDGTFGRGGHSRE 60

Query: 54  FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGV 107
                     ++  D+DP         +     + ++    F+ + + +       VDGV
Sbjct: 61  LLGRLGKAARLVVFDKDPE-AIAVANALAAADPRVTVVHGGFATMAEELEQLGIGKVDGV 119

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS QID  +RGFSF + GPLDMRM    G + +D + QA+V ++  ++   GEE
Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A ++A AI  RR + P +TT +L+  +   V   +    HPATR+FQALRI++N E+E
Sbjct: 180 RFAFQVAKAIAARRATRPLRTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284
           ELA+ L +A   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     V
Sbjct: 239 ELARTLAAALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPV 298

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336
            +S+ +  V+   ++V+ N R+RSA LR   RT E  +  +      ++ +L
Sbjct: 299 LRSLGR--VLAEDDEVSANARARSAVLRVAERT-ETPLPAEGGFAFVKIGSL 347


>gi|157412528|ref|YP_001483394.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9215]
 gi|262824943|sp|A8G2H7|RSMH_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157387103|gb|ABV49808.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 300

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 172/318 (54%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61
           M + +  +   +H  V+ ++++A L         ++  +DAT G GG+S +  +  S + 
Sbjct: 1   MQTDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELN 60

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            I LD+DPFA     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S QID 
Sbjct: 61  IIGLDQDPFARISASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDD 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I   
Sbjct: 118 PKRGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLD 177

Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +       T +   S+        +  +IHPATR+FQALRI VN EIE L + L++  +
Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPE 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG++ ++SFHSLEDRLVK  F                  +    +++TKK + P++
Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSSFK-----------------NDQRLKNLTKKPITPSE 280

Query: 298 EDVAFNRRSRSAKLRAGM 315
           ++V FN+R+RS KLR   
Sbjct: 281 QEVEFNKRARSGKLRIAQ 298


>gi|162447772|ref|YP_001620904.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
 gi|263433290|sp|A9NGP8|RSMH2_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|161985879|gb|ABX81528.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
          Length = 344

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 29/316 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H  +++++++   +   G+V +D T G GG+S+   K      ++  +D+DP  
Sbjct: 44  NTPAGMHRSIMVDEILHFFDIKLGQVGIDLTTGFGGHSKEILKKLNHTGHLHGIDQDPIE 103

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +  +  Y    + F+L Q  F        + G D ++ DLGVSSMQID  DRGF+F
Sbjct: 104 LPKTRARLESYGFNKDNFTLHQLNFKDFDAIDTE-GFDFILADLGVSSMQIDNPDRGFTF 162

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPF 185
           ++ GPLD+RM+ + GI A   + + +  ++  +L    +E  A  IA  I K + Q    
Sbjct: 163 REEGPLDLRMNPNVGIPAYVRLLEMSEIEIEHMLIENADEIYAKEIAKEITKAKIQGRYI 222

Query: 186 QTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +TT DL  +I   +               ++R+FQALRI VN+E E L + L      L 
Sbjct: 223 RTTLDLHQVIASALQKVSKKVYEEELKKASSRTFQALRIDVNSEYEVLFEMLDKLPGKLN 282

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + ++SFHS EDRLVKK F       +                  T+  ++P++E+V
Sbjct: 283 PGGKVAILSFHSGEDRLVKKAFKQYLNDGVFSM---------------TEGPILPSKEEV 327

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR  ++
Sbjct: 328 FNNPRARSAKLRIAIK 343


>gi|33864313|ref|NP_895873.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9313]
 gi|42559451|sp|Q7V4B2|RSMH_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33641093|emb|CAE22222.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 310

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 164/318 (51%), Gaps = 31/318 (9%)

Query: 10  SSAIHHTIG-DHVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKMGS--NV 61
            S+I+   G  H+ V+ + V   +   P     G +I+DAT G GG+S    +      +
Sbjct: 3   DSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRL 62

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           I LD+DP A +   E +  + ++ ++    F    D+ P +    V+ DLGVSS Q+D  
Sbjct: 63  IGLDQDPTARAAAAERLALFGDRVTIVATNFV---DFSPAEPAVVVMADLGVSSPQLDVA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-- 178
            RGFSF+  GPLDMRM+   G +A++++ +    +L  ++   GEE+ + RIA  I    
Sbjct: 120 QRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDL 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             Q     T     ++       +++ RIHPATR+FQALRI VNNE++ L + L+ A   
Sbjct: 180 AEQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDW 239

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GGLL V+SFHSLEDR VK  F                       + +T+K +V ++ 
Sbjct: 240 LVPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEM 282

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N RSRSAK R   R
Sbjct: 283 EIAANPRSRSAKCRFARR 300


>gi|331084062|ref|ZP_08333169.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330402424|gb|EGG81994.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 349

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG++ LDAT G GG+S       +   ++ ALD DP  +   
Sbjct: 50  GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +       +  ++ Q  F+ +     +  G D V+ DLGVSSMQID  +RGF+++  
Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTT 188
           GPLD+R++   GIS ++ +   +  +L  +L    +E  A  I++  I + R+  P  TT
Sbjct: 170 GPLDLRLNPEKGISVAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229

Query: 189 QDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   ++K +        K        R+FQALRI VN+E E L   +      L  G 
Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVKK F     + +                 I+K V+ P+ E+ A N
Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREGVYSE--------------ISKDVIRPSAEECARN 335

Query: 304 RRSRSAKLRAGMR 316
            RSRS K+R  ++
Sbjct: 336 SRSRSTKMRWAIK 348


>gi|260587648|ref|ZP_05853561.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|260541913|gb|EEX22482.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
          Length = 349

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG++ LDAT G GG+S       +   ++ ALD DP  +   
Sbjct: 50  GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +       +  ++ Q  F+ +     +  G D V+ DLGVSSMQID  +RGF+++  
Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTT 188
           GPLD+R++   GISA++ +   +  +L  +L    +E  A  I++  I + R+  P  TT
Sbjct: 170 GPLDLRLNPEKGISAAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229

Query: 189 QDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   ++K +        K        R+FQALRI VN+E E L   +      L  G 
Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVKK F     + +                 I+K V+ P+ E+ A N
Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREGVYSE--------------ISKDVIRPSAEECARN 335

Query: 304 RRSRSAKLRAGMR 316
            RSRS K+R  ++
Sbjct: 336 SRSRSTKMRWAIK 348


>gi|78213939|ref|YP_382718.1| methyltransferase [Synechococcus sp. CC9605]
 gi|123577439|sp|Q3AGW9|RSMH_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78198398|gb|ABB36163.1| methyltransferase [Synechococcus sp. CC9605]
          Length = 294

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 160/308 (51%), Gaps = 28/308 (9%)

Query: 20  HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           HVPVL + V+      P P  +++DAT G GG+S    +      +I LD+D  A +   
Sbjct: 6   HVPVLADAVLDAARRIPRPDGLLIDATLGGGGHSALLLEQHPGLRLIGLDQDATARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++ S+    F+   DYVP +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLASFGDRVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQDL 191
           RM+    G +A++++++    +L  ++   GEE+ + RIA  I    +       T    
Sbjct: 123 RMNAGGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDRGSYDGTAALA 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++       S+  RIHPATR+FQALRI VN+E+  L + L+ A   L+  GLL ++SFH
Sbjct: 183 YAVAGCYPPKSRRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPDGLLGIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       Q IT+K VV T+++   N R+RSAK 
Sbjct: 243 SLEDRRVKTAF-----------------LRDERLQRITRKPVVATEQEEEANPRTRSAKW 285

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 286 RVAQRLAA 293


>gi|227833499|ref|YP_002835206.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184487|ref|ZP_06043908.1| S-adenosyl-methyltransferase MraW [Corynebacterium aurimucosum ATCC
           700975]
 gi|263446134|sp|C3PHG4|RSMH_CORA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|227454515|gb|ACP33268.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 347

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 23/339 (6%)

Query: 10  SSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS-- 59
              I++ + +   HVPV+  ++  LL PA        VI+D T GAGG+S  F       
Sbjct: 4   DGTINYDVSENHGHVPVMRARMAQLLAPAIEAAGENAVIVDGTLGAGGHSEYFLTTFPSV 63

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATF-----------SQLQDYVPDKGVDGVV 108
            +I +DRD  ++S     +  + ++F    A F           S++     + G+ G +
Sbjct: 64  RIIGVDRDSASLSSASRRLSPFADRFVGVNARFDEVGSAIAEGESEVFSIAREHGIAGAL 123

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  DRGF+++   PLDMRM    G++A+D++N  +  DL RIL   G+E+
Sbjct: 124 FDLGVSSMQLDQVDRGFAYKTDAPLDMRMDPRQGMTAADILNTYSHGDLARILKTYGDER 183

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A+++ R+  PF  +  L  L+  T+   ++    HPA R+FQALR+ VN E+E
Sbjct: 184 FAGKIASAVLREREKEPFGNSARLVDLLYATIPAATRRTGGHPAKRTFQALRVEVNRELE 243

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            + Q +     AL  GG  + +S+ SLEDR+VK  F   S         +      A + 
Sbjct: 244 AIEQVIPVITDALSIGGRAVFMSYQSLEDRIVKHAFTKLSTSTTPAGLPMDLPGTAAHYS 303

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
            +T+     +QE++A N R+ S ++RA  R        +
Sbjct: 304 VVTRGAEKASQEEIAENPRAASVRVRALERLEGTPSFHE 342


>gi|315655245|ref|ZP_07908146.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii ATCC 51333]
 gi|315490500|gb|EFU80124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii ATCC 51333]
          Length = 378

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/342 (30%), Positives = 168/342 (49%), Gaps = 28/342 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSR 52
           +      H PVL E    LL PA                     G V++DAT G GG+S 
Sbjct: 1   MKSVAEIHQPVLAEVCADLLAPALTPASESVNPLSSTADFHNVQGPVLVDATLGMGGHSA 60

Query: 53  SFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107
              +    +  I +DRDP A       + D+  + S+   T+ +L D +       VDG+
Sbjct: 61  YLLERHPQLRIIGIDRDPQARDLAASRLSDFANRLSIVGTTYGELDDVLAQHGLRQVDGI 120

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGE 165
           + DLGVSS+Q+D  +RGF++              SG +A+D +N A  +++  +L   GE
Sbjct: 121 LADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAQAEEIAAVLHTYGE 180

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224
           EK +  +A AIVK RQ+ P Q +  L  +I+ T+    +    +PA R+FQALR+ VN+E
Sbjct: 181 EKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDE 240

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           + +L + L  A  +++ GG ++V S+ SLEDRLVK+ FA+           +        
Sbjct: 241 LGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPW 300

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
            + +T    +  + +VA N R+ S +LRA ++T E   E  +
Sbjct: 301 LRDLTHGSRLADESEVAQNPRAASLRLRAVVKTREPHPETRA 342


>gi|303278410|ref|XP_003058498.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla
           CCMP1545]
 gi|226459658|gb|EEH56953.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla
           CCMP1545]
          Length = 875

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 26/326 (7%)

Query: 15  HTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              G H P +L + I  L  P    V +D TFG GG+SR           + A D DP A
Sbjct: 484 QAHGTHTPAMLRETIDALVAPNRDGVYVDGTFGRGGHSRGILAALSNRGRLHAFDMDPEA 543

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDY--VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           ++  ++ +     +F++  A F  +          V GV  DLG+SS Q D   RGF  +
Sbjct: 544 IAEAKK-LEAEDARFTIHHAPFGCMDTVLKPKGVVVAGVFLDLGISSPQFDDASRGFRPE 602

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRI-----AHAIVKRRQS 182
           + GPLD+R     GI ASD + +    DL R++   GE   A+       A  + +    
Sbjct: 603 QDGPLDLRFDVTRGIPASDYLRRVERDDLARVIETYGETADATAARRVADAVCLARETGE 662

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               TT+  +SL+ +         +HPA  +FQALRI +N E +E+ +G+R+A + ++ G
Sbjct: 663 GVPSTTKAFASLVARAKGQEYQA-MHPAKLTFQALRIELNQEFDEMRRGMRAAVEVMEDG 721

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------------FQSITK 290
           G L V+++   E  ++  FF         +                        +     
Sbjct: 722 GRLGVLTWKHSECAILVDFFRHVEETRPDLPLARFLEDRHPSVAAEVALANSDGWALTAD 781

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
               P++++   N RSRSA L    +
Sbjct: 782 DAKRPSEKETRENSRSRSAILHVLRK 807


>gi|149920500|ref|ZP_01908968.1| methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149818681|gb|EDM78126.1| methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 331

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 155/316 (49%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           H  VL E V+  L PA    P   ++D T GAGG++ +     +   V+ +DRDP A+  
Sbjct: 5   HESVLAEAVVTALVPAIDSVPEGALVDVTCGAGGHTAALLARCTPNRVVLVDRDPAALEH 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +           A F+     +       V  ++ DLGVSS Q+D  +RGFSF+  
Sbjct: 65  ARRRLHGAACTVDFCHAPFADFAAELDRLGVGTVSALIADLGVSSHQLDTAERGFSFRAD 124

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM    G +A+  +    V +L R+L   GEE +A+RIA AI+  R        +
Sbjct: 125 APLDMRMDPTRGETAAARLAAMTVDELVRVLRRYGEEAEAARIAPAILAARPQTTKVLAE 184

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +   +      +   RIHPATR+FQALRI VN E+++L + L      L  GG + V+S
Sbjct: 185 VVEQAMSARSRRALGKRIHPATRTFQALRILVNGELDQLDRLLEDGPARLAVGGRMGVIS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQ-------SITKKVVVPTQEDV 300
           FHSLEDR VK+ FA           +  +        F+        I++K VV  + + 
Sbjct: 245 FHSLEDRPVKQRFAKLCRAPKLPASLPLTTAELEARGFRAHFGVPAEISRKGVVADEAER 304

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA+LRA  R
Sbjct: 305 ERNPRSRSARLRAIER 320


>gi|291551135|emb|CBL27397.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14]
          Length = 359

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/318 (30%), Positives = 166/318 (52%), Gaps = 29/318 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++ +++  L   PG+   DAT G GG++++  +      ++ A D DP  
Sbjct: 54  NTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMLERLKGEGHIYATDVDPEE 113

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + D     +  S+    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 114 SAKTRKRLADQGFGEDILSIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 173

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+ +GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI  + R+   
Sbjct: 174 FKVNGPLDLRLNQEKGISAAERLDNISEEELAGMLYENSDEPYCEELAKAITTEIRKGNR 233

Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             TT  L ++I+KT+ F  NN+           R+FQALRI VNNE E L + +     A
Sbjct: 234 IDTTTKLRNVIEKTLDFLPNNKEKKDIIKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGA 293

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK GG + +++FHS ED+LVKK   +   + +   +               + VV P+ +
Sbjct: 294 LKPGGRVAILTFHSGEDKLVKKALKAGYKEGIYSEYA--------------RDVVRPSAQ 339

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N R+RS K+R  ++
Sbjct: 340 ECAQNGRARSTKMRWAVK 357


>gi|328873505|gb|EGG21872.1| hypothetical protein DFA_01758 [Dictyostelium fasciculatum]
          Length = 387

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 108/322 (33%), Positives = 173/322 (53%), Gaps = 20/322 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PV++ +VI  L+   G   +DATFG GG++ +      GS VIA+DRDP       + 
Sbjct: 58  HKPVMVNEVIDRLHLKDGHCYIDATFGLGGHTLNILDRCKGSFVIAVDRDPKIFELTAKI 117

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG- 131
              Y+++       FS L   + ++      + GV+ D G SS+Q+D  DRGFSF+K   
Sbjct: 118 RETYQDRLITLHGNFSNLSQLLKERGLDTLKISGVLMDFGCSSLQLDSPDRGFSFRKDFD 177

Query: 132 -PLDMRMSCSGISASD-----VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            PLDMRM+ +  S        ++N  + + L  I+   GEE+   ++AH I++RRQ    
Sbjct: 178 GPLDMRMNNTDTSTQRLTATDILNTFSNQQLRDIMYYYGEERHTLKVAHEIIRRRQYERI 237

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           + T  L  +I+  + +    +    +R F++LR+FVN+E  E+ +G+R AEK L  GG L
Sbjct: 238 EKTSQLVDIIESCIPYPAAMK--SISRIFRSLRMFVNDETGEIYRGMREAEKILAPGGNL 295

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNR 304
           +V+SFHS+EDR+ K+FF +R       R  +    H   F+ +   + + PT E++ +N 
Sbjct: 296 VVISFHSIEDRIAKRFFRNR---CAVKRSTLTPLQHDPSFEYVDGSQPLFPTDEEIEWNS 352

Query: 305 RSRSAKLRAGMRTVERSIEDDS 326
           RS+ A +R+  RT    +  D 
Sbjct: 353 RSKPAIVRSATRTSSSPLILDD 374


>gi|194213931|ref|XP_001918167.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Equus caballus]
          Length = 401

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 127/341 (37%), Positives = 186/341 (54%), Gaps = 38/341 (11%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIAL 64
           ++  S+       H+PV++E+V+  L P  G++ LD TFG+GG++R+  +  S+  + AL
Sbjct: 59  RSQDSSSEAMTKLHIPVMVEEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYAL 118

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQID 119
           DRDP A +  ++    Y +Q       FSQ +  +       + +DGV+ DLG SSMQ+D
Sbjct: 119 DRDPTAYALAEQLSELYPKQIRAMLGQFSQAEALLMKAGVQPETLDGVLLDLGCSSMQLD 178

Query: 120 CGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
             +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA A
Sbjct: 179 APERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASA 238

Query: 176 IVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEE 227
           IV+ R   P   TQ L+S+         +Y  K       H AT++FQA RIFVN+E+ E
Sbjct: 239 IVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNDELNE 298

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF---------FASRSGKVMAVRHMIPS 278
           L  GL++A+K L+ GG L+ +SFHSLEDR+VK+F         F   + + +     + S
Sbjct: 299 LYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMAERFNLSARQKVIQSSQLGS 358

Query: 279 NAH----------PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
                        P +++ I K+VV P   DV +N R RSA
Sbjct: 359 GHKNKEGGSMGRAPIMWELIHKRVVTPEDHDVEYNLRERSA 399


>gi|307128732|ref|YP_003880762.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI]
 gi|306483194|gb|ADM90064.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI]
          Length = 306

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H PVLL++ + LL      + +D TFG GG+S S  K       +IA D+D +++    
Sbjct: 8   YHNPVLLDETLTLLVKEIDGIYIDTTFGGGGHSFSLLKKLNNKGRLIAFDQDIYSIKK-N 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +               ++        V G++ DLG+SS QI+   RGFS + +  LDM
Sbjct: 67  NIIDTRFNLVKTNYIFIKKILKRYNLNKVSGILADLGISSHQINTPKRGFSIRSNSILDM 126

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM     I+A  ++N  +  +L  I  I G+ K +  +A  I+K+R+    + T DL ++
Sbjct: 127 RMDTFKKINAKYIINNYSYNELYNIFKIYGDRKNSKFLAKLIIKQRKKKIIKYTFDLINI 186

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++   +F K       ++ FQ+LRI VN+EI  L   L ++   LK GG + V+S+HS+E
Sbjct: 187 LK--FFFKKKIENKFLSKIFQSLRIEVNDEINALKYLLNNSLSILKPGGRIAVISYHSIE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VKKF  + +   +       +N  P     +  K +  ++E++  N RSRSA LR  
Sbjct: 245 DRIVKKFLKTGNFNGVVSYDGYGNNLSP--LILLKPKRIFSSKEEIKKNNRSRSAILRIA 302

Query: 315 MR 316
            +
Sbjct: 303 EK 304


>gi|196231370|ref|ZP_03130229.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
 gi|196224706|gb|EDY19217.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
          Length = 351

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 25/316 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           ++     G H P+++ +++ +L P PG+  +DAT G GG+SR   +    G  +I LD D
Sbjct: 44  ASGKTPAGMHRPIMVSEIMEILAPKPGEFAVDATLGYGGHSREILQRITPGGRLIGLDVD 103

Query: 68  PFAVSCGQETMRD---YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121
           P  +   +  +R      + F+  +  ++ L   +  +     D ++ DLG+SSMQID  
Sbjct: 104 PLELPKTEARLRALGFGPDVFTAQRVNYAGLPALIAREAPEGADIILADLGLSSMQIDNP 163

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGF+F+  GPLD+RM+   G  AS ++   N   L ++L    +E  A+ +  AI+  +
Sbjct: 164 SRGFTFKVEGPLDLRMNPERGQPASALLATINAAKLEQLLTENADEPNAALLTRAILDAQ 223

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHP-ATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              P  TT  L+++I+  +        +    R FQALRI VN+E   L   LR   + L
Sbjct: 224 ARTPITTTTALATVIRTALASLPRIEPNDTIRRVFQALRIAVNDEFSALDTFLRHLPQCL 283

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG + +++FHS EDR VK  F               +     ++  I + V+ P  E+
Sbjct: 284 RPGGRIAILTFHSGEDRRVKHAFK--------------TGLQEGLYSEIARDVLRPGAEE 329

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N RS SAKLR  +
Sbjct: 330 LRANPRSASAKLRWAV 345


>gi|297623827|ref|YP_003705261.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093]
 gi|297165007|gb|ADI14718.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093]
          Length = 339

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/295 (38%), Positives = 166/295 (56%), Gaps = 32/295 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP--------F 69
             H PV+L + +A L   P    LD TFGAGG++R+  + G NV+ALDRDP         
Sbjct: 8   APHAPVMLAECLAHLAVKPQAWYLDGTFGAGGHTRALLEAGGNVLALDRDPSVTRFLPED 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++ G+    +         A  + +          GV+ DLGVSSMQ+D  +RGFSF+ 
Sbjct: 68  ALASGRLRFVEGNFDALDRHAAAAGVGPL------AGVLLDLGVSSMQLDEAERGFSFRH 121

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM  +G+ A+D+VN A+ ++L  ++   GEE+ + RIA  IV+ R  AP  TT 
Sbjct: 122 PGPLDMRMGPTGLCAADLVNSASQEELASVIFRYGEERYSRRIARRIVEARAKAPITTTD 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ +I +        R HPA R+FQALR+ VN+E+  L + L +AE+AL  GG L+V++
Sbjct: 182 ELAEIIARAYPPGPR-RDHPARRTFQALRVAVNDELGALERALAAAERALAPGGRLVVLT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +HSLEDR+VK+ F S +                 +   +TKK +  + E+VA N 
Sbjct: 241 YHSLEDRIVKRAFKSSA-----------------LLTPLTKKPLTASPEEVAANP 278


>gi|163814931|ref|ZP_02206319.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759]
 gi|158449870|gb|EDP26865.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759]
          Length = 348

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + + +++      PG+  LDAT G GG++    +      ++ ALD DP  
Sbjct: 44  STPAGMHISICVNEILDFFQIQPGQQGLDATLGYGGHTMRMLEQLHGEGHMYALDVDPIE 103

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
           +   ++ + D     +  ++ Q  F  +     +    D ++ DLGVSSMQID  DRGF+
Sbjct: 104 IVKTKQRLADAGYGEDILTIKQTNFRNIDKVAEEAGKFDFILADLGVSSMQIDNPDRGFT 163

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  GPLD+R+    G SA++ + + + ++L  +     +E  A  IA  I+KR ++  +
Sbjct: 164 YKFDGPLDLRLDPEKGESAAERLREVSYEELVGMFQENSDEPYAEEIATVIMKRNRTKNY 223

Query: 186 -QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT  +   I++ + F      K        R FQALRI VN+E E L   L     AL
Sbjct: 224 VETTIQMKEAIEEALSFVPEKERKEAVKKSCQRCFQALRIDVNSEFEVLYDFLDKLPDAL 283

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG + +++FHS EDRLVK+ F + +   +                 ++K V+ P+ E+
Sbjct: 284 RPGGRVAILTFHSGEDRLVKRAFKAGAKAGVYSE--------------VSKDVIRPSAEE 329

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  ++
Sbjct: 330 CARNPRARSTKMRWAVK 346


>gi|303279384|ref|XP_003058985.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460145|gb|EEH57440.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 295

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/292 (35%), Positives = 151/292 (51%), Gaps = 14/292 (4%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCG--QETMRDYKEQFSLFQATFS 93
             +D T GAGG++ +       ++     D DP A +       + +       F+A   
Sbjct: 3   TYVDGTMGAGGHACAVIGEHLELVTFVGFDVDPLAHAIAPRGARVLELNTVLDNFRAMRF 62

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQAN 152
           +L +   +  VD ++ DLGVSSM +D  +RGFSF   GPLDMRM      SA DVVN+  
Sbjct: 63  RLDELELNGKVDAILLDLGVSSMHLDSPERGFSFGNDGPLDMRMGPSCAFSAMDVVNEWP 122

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPA 210
            +D+ R++   GEEK    IA  I +RR  AP  TT  L   I +   V   ++  +HPA
Sbjct: 123 EEDIARVIRDYGEEKHWRLIARRICERRAEAPILTTSALVRAIGRVPGVKKGRSGNVHPA 182

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
           TR+FQ +RI VN+E+  +   + +A  AL  GG L V+SFHSLED++VK  F  R+G+  
Sbjct: 183 TRTFQGIRIAVNDELGAIEDAIPAAIDALAPGGRLGVISFHSLEDKIVKDIFRERAGRAP 242

Query: 271 AVR------HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                            P V + IT+K +   +++V  N RSRSAKLR   +
Sbjct: 243 PPDEGPVSAWAPQPEPPPKVVKLITRKPLSADEDEVRENARSRSAKLRVCEK 294


>gi|88809878|ref|ZP_01125384.1| methyltransferase [Synechococcus sp. WH 7805]
 gi|88786262|gb|EAR17423.1| methyltransferase [Synechococcus sp. WH 7805]
          Length = 312

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 157/314 (50%), Gaps = 31/314 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66
             +   HVPVL + ++  L+  P       +++DAT G GG+S           +I LD+
Sbjct: 8   TDSAFQHVPVLADVLLKTLDQEPSDHWQSGLVVDATLGGGGHSSLLLDRYPGLRLIGLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A +     +R ++E+ ++    F+   DY P      V+ DLGVSS Q+D   RGFS
Sbjct: 68  DATARAAAAARLRPWQERVTIVATNFA---DYSPPGSASLVLADLGVSSPQLDVAQRGFS 124

Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182
           F+  GPLDMRM+  G   +A+ ++ +    DL  ++   GEE+ + RIA  I      Q 
Sbjct: 125 FRLDGPLDMRMNPEGGGETAAQLIERLKESDLADLIYAYGEERLSRRIARRIKADLAVQG 184

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T     ++       ++  RIHPATR+FQALRI VN+E+  L + L  +   L+ G
Sbjct: 185 TYSGTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAVNHELAALDRLLEQSPDWLQPG 244

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G+L ++SFHSLEDR VK  F                       + IT++ +  ++++   
Sbjct: 245 GMLAIISFHSLEDRRVKTAF-----------------LQDERLERITRRPLTASEDEQER 287

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   R
Sbjct: 288 NARSRSAKLRIARR 301


>gi|325989697|ref|YP_004249396.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis
           KI3806]
 gi|323574782|emb|CBZ40442.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma
           suis]
          Length = 304

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+PV+L +V      +   + +D TFG GG+S+   +       +I +D DP  +    
Sbjct: 1   MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKELLRSLGENSRLIGMDVDPKVIPYAN 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131
           E +     +FS     ++ +++Y         DG++FDLG+S++Q+   +R FS+   S 
Sbjct: 61  E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            L++R    G S  +++N    K L  I    G   +A R+   I++ R++ P    + L
Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVKQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+++   +K    +P    FQ+LRI  NNE+    + LR A + LK  G L++++FH
Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED +V ++    S  +            P  F   +   ++P++ ++  N  SRSAKL
Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAKL 296

Query: 312 RAGMRTVE 319
               +T E
Sbjct: 297 WVFTKTRE 304


>gi|78185678|ref|YP_378112.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9902]
 gi|123581009|sp|Q3AW00|RSMH_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78169972|gb|ABB27069.1| methyltransferase [Synechococcus sp. CC9902]
          Length = 294

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 28/307 (9%)

Query: 20  HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           HVPVL + V+A     P    V++DAT G GG+S    +      +I LD+DP A +   
Sbjct: 6   HVPVLADAVVAGAEHLPHHNGVLIDATLGGGGHSALLLERFPGLRLIGLDQDPTARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++  +    F+    Y P   V  V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLAAFADRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TTQDL 191
           RM+    G +A++++++     L  ++   GEE+ + RIA  I     +      T    
Sbjct: 123 RMNPGSDGETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALA 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L+ GG++ V+SFH
Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLQQAPDWLETGGVMGVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       + IT+K  V T ++   N RSRSAK 
Sbjct: 243 SLEDRRVKTAF-----------------LQDERLERITRKPTVATDDEQNRNPRSRSAKW 285

Query: 312 RAGMRTV 318
           R   R  
Sbjct: 286 RLARRVN 292


>gi|318040652|ref|ZP_07972608.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0101]
          Length = 309

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 159/312 (50%), Gaps = 32/312 (10%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGSNV--IALD 65
               DHVPVL E V+A      G        V++D T G GG+S    +    +  I LD
Sbjct: 10  SATFDHVPVLAEPVLAGFAELEGLLDQRGEGVLIDCTLGGGGHSALLLEAHPRLRLIGLD 69

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A +   + +  + ++  +    F+    Y P + V  V+ DLGVSS Q+D  +RGF
Sbjct: 70  QDPTARAAAAQRLAPFGDRVEIVATNFA---TYTPAEPVVAVLADLGVSSPQLDVAERGF 126

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182
           SF+  GPLDMRM+   G +A+ ++++ +  +L  ++   GEE+ + RIA  I      Q 
Sbjct: 127 SFRLDGPLDMRMNPDAGETAAALIDRLDETELADLIYAYGEERLSRRIARRIKHDLAEQG 186

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           A   T     ++       ++  RIHPATR+FQALRI VN+E+  L + L SA   L  G
Sbjct: 187 AYGGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLSSAPDWLVPG 246

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           GL  V+SFHSLEDR VK  F S                     Q IT+K V+ T E+   
Sbjct: 247 GLFGVISFHSLEDRRVKTAFVSDE-----------------RLQRITRKAVMATTEEEER 289

Query: 303 NRRSRSAKLRAG 314
           N RSRSA+LR  
Sbjct: 290 NPRSRSARLRLA 301


>gi|319440248|ref|ZP_07989404.1| 16S rRNA m(4)C1402 methyltranserfase [Corynebacterium variabile DSM
           44702]
          Length = 340

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 27/312 (8%)

Query: 20  HVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           HVPV+ ++++ L+           P  VI+D T GAGG++  F +   +  V+ LDRDP 
Sbjct: 14  HVPVMRDRMVELVGAGVEGTGATRP--VIVDGTLGAGGHTEVFLETFPDAVVVGLDRDPN 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSM 116
           A++  Q+ +  + ++F  ++  F  L D + D              GV G +FDLGVSSM
Sbjct: 72  AIAQAQDRLARFGDRFIAYRTRFDGLGDALDDLASDGRLPGEFATTGVSGYLFDLGVSSM 131

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF++ +  PLDMRM      +A++V+N  +  DL  +L   G+E+ A +IA A
Sbjct: 132 QLDQAERGFAYSQDAPLDMRMDPDSPLTAAEVLNTYSHGDLAHVLSAYGDERFAGKIASA 191

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +++ R+  PF T+  L  L+ +T+   ++    HPA R+FQALR+ VN E++ LA  + +
Sbjct: 192 VLREREQEPFTTSGRLVELLYRTIPAATRRTGGHPAKRTFQALRVEVNAELDSLAAVIPA 251

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A   L  GG+ + +S+ SLED++VKK  A  +         +      A F  +T+    
Sbjct: 252 ATARLGLGGVAVFMSYQSLEDKIVKKALAELTANRTPPGLPVDLPDTAASFDLVTRGAEK 311

Query: 295 PTQEDVAFNRRS 306
               ++  N RS
Sbjct: 312 ADAAEIERNPRS 323


>gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera]
          Length = 444

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 168/366 (45%), Gaps = 51/366 (13%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSF 54
             +      + ++     HVPV+L +V+          + +P +  +D T GA G+S + 
Sbjct: 78  SDREFDKEQAMVYGGTATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAI 137

Query: 55  CKMGSNV---IALDRDPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYV 99
            +    +   + +D DP A    Q  +R             +   F   ++   ++ + +
Sbjct: 138 IQAHPELELYVGMDVDPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEEL 197

Query: 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTR 158
              GVDG++ DLG+SSMQ++  +RGFS   +GPLDMRM     ++A D++N     ++ R
Sbjct: 198 LSSGVDGILMDLGMSSMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGR 257

Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQ 215
           IL   GEE     + + IVK R      +T +L  LI+KT   ++      I  ATR FQ
Sbjct: 258 ILREYGEESNWRSLQNKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQ 317

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF------------- 262
           ALRI VN+E++ L   L +  + L  GG L V+SFHSLEDR+VK+ F             
Sbjct: 318 ALRIAVNDELKTLEDSLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESG 377

Query: 263 ------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
                        +           I           +TK+ + P++E+   NRRSRSAK
Sbjct: 378 EGGGQEGCGKDLRNIRNDNDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAK 437

Query: 311 LRAGMR 316
           LR   +
Sbjct: 438 LRVIQK 443


>gi|315656834|ref|ZP_07909721.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492789|gb|EFU82393.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 378

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 28/342 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSR 52
           +      H PVL      LL PA                     G V++DAT G GG+S 
Sbjct: 1   MKSVAEIHQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSA 60

Query: 53  SFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107
              +    +  I +DRDP A       + D+  + S+   T+ +L D +       VDG+
Sbjct: 61  YLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGI 120

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGE 165
           + DLGVSS+Q+D  +RGF++              SG +A+D +N A V+++  +L   GE
Sbjct: 121 LADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGE 180

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224
           EK +  +A AIVK RQ+ P Q +  L  +I+ T+    +    +PA R+FQALR+ VN+E
Sbjct: 181 EKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDE 240

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           + +L + L  A  +++ GG ++V S+ SLEDRLVK+ FA+           +        
Sbjct: 241 LGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPW 300

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
            + +T    +  + +VA N R+ S +LRA  +T E   E  +
Sbjct: 301 LRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPETRA 342


>gi|298346700|ref|YP_003719387.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389591|ref|ZP_07371553.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236761|gb|ADI67893.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327144|gb|EFL94380.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 379

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 28/342 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSR 52
           +      H PVL      LL PA                     G V++DAT G GG+S 
Sbjct: 1   MKSVAEIHQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSA 60

Query: 53  SFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107
              +    +  I +DRDP A       + D+  + S+   T+ +L D +       VDG+
Sbjct: 61  YLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGI 120

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGE 165
           + DLGVSS+Q+D  +RGF++              SG +A+D +N A V+++  +L   GE
Sbjct: 121 LADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGE 180

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224
           EK +  +A AIVK RQ+ P Q +  L  +I+ T+    +    +PA R+FQALR+ VN+E
Sbjct: 181 EKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDE 240

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           + +L + L  A  +++ GG ++V S+ SLEDRLVK+ FA+           +        
Sbjct: 241 LGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPW 300

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
            + +T    +  + +VA N R+ S +LRA  +T E   E  +
Sbjct: 301 LRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPETRA 342


>gi|294787094|ref|ZP_06752348.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305]
 gi|315226746|ref|ZP_07868534.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM
           10105]
 gi|294485927|gb|EFG33561.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305]
 gi|315120878|gb|EFT84010.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM
           10105]
          Length = 348

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           +      H PVLL+  + L+       +I+D T G  G++ +F +      +I +DRD  
Sbjct: 1   MTDLASIHTPVLLDDCVRLITDGRQAPLIVDCTLGLAGHASAFLQADPQARLIGIDRDQE 60

Query: 70  AVSCGQETMRDYK--EQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           A++   E MRD    ++F+   A   +FSQ+ D    K VD V  DLG+SS+QID  DRG
Sbjct: 61  ALTLATERMRDLGLSDRFTPVHAAFDSFSQVLDEQGIKTVDAVFMDLGLSSLQIDENDRG 120

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQS 182
           FS+    PLDMRM     ++A DV+     +DL RI    G+E+ A  IA  +VK R + 
Sbjct: 121 FSYSHDAPLDMRMDPGQSLTARDVLLTYGRQDLARIFREYGQERFAGPIASRLVKAREEG 180

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              ++T  L +L+ + +  +     +PA R FQALRI VN E+++L   L  A   L  G
Sbjct: 181 ETPRSTGQLVALVDQVIPRAHRAPGNPAKRVFQALRIEVNGELDKLRMTLPQAACRLNLG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+V S+HSLEDR+ K F AS     +     +        F  +T+  V   Q + A 
Sbjct: 241 GCLVVESYHSLEDRITKTFMASGIHADVPAGLPVIPQEAQPFFADLTRGAVKAGQAEAAH 300

Query: 303 NRRSRSAKLRAGM 315
           N RS S +LRA  
Sbjct: 301 NSRSTSVRLRAVE 313


>gi|253577924|ref|ZP_04855196.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850242|gb|EES78200.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA]
          Length = 351

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 161/317 (50%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  LN  PG+   DAT G GG++++  +      ++ A D DP  
Sbjct: 47  NTPAGMHISIMVKEILDFLNIQPGETGFDATLGYGGHTKAMLQCLNGKGHIYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     E  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTKKRLAEQGFGEELLTVKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA+  ++  + ++L  +L    +E     +A AI  + R+   
Sbjct: 167 FKTDGPLDLRLNQETGISAAQRLDTISREELAGMLCENSDEPYCEELAKAITDEIRRGNH 226

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+KT+ F      K        R+FQALRI VN+E E L + +     AL
Sbjct: 227 IDTTTKLRQVIEKTLDFLPEKEKKETIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPDAL 286

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG + +++FHS ED+LVKK   +     +   +               K V+ P+ ++
Sbjct: 287 RPGGRVAILTFHSGEDKLVKKALKAGYKDGIYSDYA--------------KDVIRPSAKE 332

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 333 CTQNPRARSTKMRWAIK 349


>gi|294791087|ref|ZP_06756245.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304]
 gi|294458984|gb|EFG27337.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304]
          Length = 342

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/318 (32%), Positives = 161/318 (50%), Gaps = 16/318 (5%)

Query: 13  IHHTIGDHVPVLLEKV-------IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIA 63
           +      H PVLL++        +         VI+D T G  G++ +F    S   +I 
Sbjct: 2   MTDIASIHTPVLLDECCQLVCGGLDQAAADRTPVIVDCTLGLAGHASAFLARASRARLIG 61

Query: 64  LDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
           +DRD  A+    + M++  + ++F    A F      + ++    VD V  DLG+SS+QI
Sbjct: 62  IDRDREALDLATDRMKNLGFADRFIPLHAAFDDFSSLMENQGLDTVDAVFMDLGLSSLQI 121

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA-I 176
           D  DRGFS+    PLDMRM      +A D++ +++ ++LTRI    G+E+ + +IA A +
Sbjct: 122 DESDRGFSYSHDAPLDMRMDTDQTVTAQDILRESSKEELTRIFRHYGQERYSRQIASALV 181

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +R +  P +TT  L  L+ + V  S  +  +PA R FQALRI VN E+++LA  L    
Sbjct: 182 RQRDKGHPVETTGQLVQLVDRVVPKSHRSGGNPAKRVFQALRIQVNGELDKLAATLPQIA 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG L+V S+HSLED++VK F A      +     +  +     F  +T   +   
Sbjct: 242 LHLSLGGRLVVESYHSLEDKIVKSFMAQGLQANLPPGLPVIPDDAQPFFTDLTHGAIKAD 301

Query: 297 QEDVAFNRRSRSAKLRAG 314
           Q++   N RS S +LRA 
Sbjct: 302 QDEAEHNSRSTSVRLRAV 319


>gi|325662020|ref|ZP_08150639.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471683|gb|EGC74902.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 374

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 28/317 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD DP     
Sbjct: 72  VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131

Query: 74  GQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E +       E  ++ Q  F+ +     +    D V+ DLGVSSMQID  +RGF+++K
Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R++   G+SA++ + +   ++L  +L    +E  A  IA  ++++ R+  P +T
Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAVTVMEKLRKGEPVET 251

Query: 188 TQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L   I++ + F      K        R+FQALRI VN+E E L   +     AL  G
Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS EDR+VKK F       +                 I + V+ P+ E+   
Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAGIYSE--------------IAQDVIRPSAEECTR 357

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS K+R  +R  E
Sbjct: 358 NSRARSTKMRWAVRAKE 374


>gi|320533237|ref|ZP_08033944.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134542|gb|EFW26783.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 329

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 161/314 (51%), Gaps = 24/314 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKMGS--NV 61
           +G H PVLLE+ + LL PA                V++D T G GG++ +  +      V
Sbjct: 14  VGRHQPVLLERCLDLLAPAIEGHADSTSTGGPARPVMIDCTLGMGGHTEAALERFPALKV 73

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115
           + +DRDP A++     +  + ++F   QAT+  +     +        VD V+ DLGVSS
Sbjct: 74  VGIDRDPEAIALASARLARFGDRFIAVQATYDAVNRVAREHSARAEGAVDAVLMDLGVSS 133

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D   RGFS+ +  PLDMRM   SG++A D++  A+  +L+RIL   GEE+ ASRIA 
Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLETADAVELSRILRTYGEERFASRIAA 193

Query: 175 AIVKRRQ--SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           AIV+RRQ       T      + Q     ++ +  HPA R+FQALRI VN E++ L + +
Sbjct: 194 AIVRRRQAGEPVVSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             A  +L+ GG L+V S+ SLEDR+VK+  A  +         +         + +T   
Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPETDRPYLELLTSGA 313

Query: 293 VVPTQEDVAFNRRS 306
                 ++  N RS
Sbjct: 314 EKADARELDHNPRS 327


>gi|331085870|ref|ZP_08334953.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406793|gb|EGG86298.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 374

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 28/317 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD DP     
Sbjct: 72  VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131

Query: 74  GQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E +       E  ++ Q  F+ +     +    D V+ DLGVSSMQID  +RGF+++K
Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R++   G+SA++ + +   ++L  +L    +E  A  IA  ++++ R+  P +T
Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAATVMEKLRKGEPVET 251

Query: 188 TQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L   I++ + F      K        R+FQALRI VN+E E L   +     AL  G
Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS EDR+VKK F       +                 I + V+ P+ E+   
Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAGIYSE--------------IAQDVIRPSAEECTR 357

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS K+R  +R  E
Sbjct: 358 NSRARSTKMRWAVRAKE 374


>gi|295839424|ref|ZP_06826357.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74]
 gi|295827469|gb|EFG65411.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74]
          Length = 312

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 108/289 (37%), Positives = 165/289 (57%), Gaps = 10/289 (3%)

Query: 22  PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           PV+L + + LL PA   PG V++D T G GG+S +         ++ALDRD  A+    E
Sbjct: 2   PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+  L  A + +L D +       V GV+FDLGVSSMQ+D   RGF++ +  PL
Sbjct: 62  RLAPFGERALLAHAVYDELPDVLERLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDAPL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L 
Sbjct: 122 DMRMDQSAGMSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFTRSARLV 181

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + V+++H
Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNSLAVGGRIAVLAYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           SLEDRLVK+  ++ +         +    +    + +T+   +P +E+V
Sbjct: 242 SLEDRLVKQVLSTGATGTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290


>gi|332670119|ref|YP_004453127.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484]
 gi|332339157|gb|AEE45740.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484]
          Length = 337

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 180/313 (57%), Gaps = 10/313 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAP---GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
                H PVLL++ + LL PA    G V++D+T G GG++    +      V+ +DRDP 
Sbjct: 8   DAATRHTPVLLQRCLDLLAPALAADGSVMVDSTLGMGGHTEGVLRAFPHVRVVGIDRDPQ 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++     +  + ++F+   A + ++ + +       V GV+ DLGVSS+Q+D  +RGFS
Sbjct: 68  ALALAGRRLAPFGDRFTGVHAVYDEIGEVLDGLGIDHVQGVLMDLGVSSLQLDERERGFS 127

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM    G +A+DVVN  + +DL R+L + GEE+ A+RIA ++V+ R+ AP 
Sbjct: 128 YAHDAPLDMRMDASRGQTAADVVNGYDERDLARVLRVYGEERFAARIARSVVRAREKAPL 187

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T +L  L++ ++   ++    HPA R+FQALRI VN E+E L + L ++ +AL  GG 
Sbjct: 188 TRTGELVDLVRASIPAATRKTGGHPAKRTFQALRIEVNGELEVLERALPASVEALAVGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V ++HSLEDRLVK+  A+ +         +    H    + +T+      + ++A N 
Sbjct: 248 IVVEAYHSLEDRLVKRTLAAGATSSAPPDLPVEPETHAPYLRLVTRGAEEADEAELARNP 307

Query: 305 RSRSAKLRAGMRT 317
           R++S +LRA  R 
Sbjct: 308 RAQSVRLRAAERI 320


>gi|116073986|ref|ZP_01471248.1| methyltransferase [Synechococcus sp. RS9916]
 gi|116069291|gb|EAU75043.1| methyltransferase [Synechococcus sp. RS9916]
          Length = 305

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/313 (34%), Positives = 155/313 (49%), Gaps = 31/313 (9%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
                HVPVL E ++  L  +P       + +DAT G  G+S           +I LD+D
Sbjct: 9   PEAFAHVPVLAEPLLEALAASPESPWEKGLFIDATLGGAGHSALLLDRYPQLRLIGLDQD 68

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A S  Q  +  Y ++  +    F+   DY P+   D V+ DLGVSS Q+D   RGFSF
Sbjct: 69  PTARSAAQVRLEPYGDRAEIVATNFA---DYQPEAPADLVLADLGVSSPQLDVAARGFSF 125

Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  GPLDMRM+  G   +A++++ +   + L  ++   GEE+ + RIA  I    +    
Sbjct: 126 RLDGPLDMRMNPQGGGETAAELIERLEEEPLADLIYAYGEERLSRRIARRIKADLKENGG 185

Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T     ++       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L  GG
Sbjct: 186 YAGTADLAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLNPGG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           +L ++SFHSLEDR VK  F                         IT+K +V  + + A N
Sbjct: 246 VLAIISFHSLEDRRVKTAF-----------------LQDDRLARITRKPLVAAEAEEAAN 288

Query: 304 RRSRSAKLRAGMR 316
            RSRSAKLR   R
Sbjct: 289 PRSRSAKLRLARR 301


>gi|197304029|ref|ZP_03169061.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC
           29176]
 gi|197296997|gb|EDY31565.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC
           29176]
          Length = 351

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 94/318 (29%), Positives = 165/318 (51%), Gaps = 29/318 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  L+  PG+   DAT G GG++++  +      ++ A D DP  
Sbjct: 47  NTPAGMHISIMVKEILDFLDIQPGQTGFDATLGYGGHTKAMLECLKGQGHIYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     E  ++    F  + +      G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTKKRLEEQGFGEEILTVCLQNFCTIDEIAEKVGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI  + R+   
Sbjct: 167 FKADGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITDEIRRGNR 226

Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             TT  L ++I+KT+ F  +N+           R+FQALRI VNNE E L + +     A
Sbjct: 227 IDTTTKLRNVIEKTLSFLPDNKEKKDIVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPDA 286

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG + +++FHS ED+LVKK   +     +   +               K V+ P+ +
Sbjct: 287 LRPGGRVAILTFHSGEDKLVKKALKAGYKAGIYSDYA--------------KDVIRPSAQ 332

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N R+RS K+R  ++
Sbjct: 333 ECAKNGRARSTKMRWAVK 350


>gi|168700539|ref|ZP_02732816.1| S-adenosyl-methyltransferase MraW [Gemmata obscuriglobus UQM 2246]
          Length = 341

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/330 (33%), Positives = 158/330 (47%), Gaps = 31/330 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
               G H+PVLL +V+A L+P PG+ ++D T G  G+S    +       +IA D D   
Sbjct: 25  STAEGAHIPVLLAEVLAALDPRPGQTVVDCTLGFAGHSLELLRRVAPDGLLIATDLDVGN 84

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +  + +    F L    F+ L   +       VD V+ DLG+SSMQ+D  DRGFSF
Sbjct: 85  IEPARPKLEEAGGLFGLHHTNFAGLPTVLAIEGVTAVDAVLADLGMSSMQVDDRDRGFSF 144

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G +A+ ++   +  +L      LG+E QA  IA A+V+ RQ+AP +
Sbjct: 145 MRDGPLDMRMDRTRGRTAAQLLATLSRDELAACFSELGDEPQAGAIADAVVRERQTAPVE 204

Query: 187 TTQDLSSLIQKT----------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            T+ L +LI+                +   + P TR FQALRI  N E+  L Q LR   
Sbjct: 205 RTKQLRALIEAAAPVRIDRAPGAPPERKQLLAPVTRVFQALRILTNRELASLQQLLRVLP 264

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             LK GG+  ++SFHS EDRLVK  F       +                 ++   +  T
Sbjct: 265 TVLKPGGVAAIISFHSGEDRLVKAAFRDGLRAGVYSS--------------VSPDAIRST 310

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
            E+   N R+RSAKLR   R       + +
Sbjct: 311 FEERRANPRARSAKLRVARRAEAPPDAEPA 340


>gi|113954684|ref|YP_731835.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311]
 gi|123327560|sp|Q0I6T7|RSMH_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113882035|gb|ABI46993.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311]
          Length = 310

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL E ++ +L+  P        ++DAT G GG+S+   +      ++ LD+DP A +
Sbjct: 14  HVPVLAETLMQVLSEQPPILWQNTAVIDATLGGGGHSKLILERFPGVRLVGLDQDPSARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                +  + ++  +    F+    + P + V  V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAASRLEPFLDRVQIVPVNFA---AFEPPEPVSLVLADLGVSSPQLDVASRGFSFRLDGP 130

Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TT 188
           LDMRM+    G +A +++ + +V  L  ++   GEE+ + RIA  I    ++      T 
Sbjct: 131 LDMRMNPVAGGETAEEMIARLDVNALADLIYAFGEERLSRRIARRIKADLEAEGAYAGTA 190

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
               ++       ++  RIHPATR+FQALRI VN+E+  L + L++A   LK GG+L ++
Sbjct: 191 ALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQTAPGWLKPGGVLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                       + +T+K  + ++++ A N RSRS
Sbjct: 251 SFHSLEDRRVKTAF-----------------LQEERLERVTRKPFMASEQEQADNPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRIARR 301


>gi|333027784|ref|ZP_08455848.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071]
 gi|332747636|gb|EGJ78077.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/289 (37%), Positives = 165/289 (57%), Gaps = 10/289 (3%)

Query: 22  PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           PV+L + + LL PA   PG V++D T G GG+S +         ++ALDRD  A+    E
Sbjct: 2   PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+  L  A + +L D +       V G++FDLGVSSMQ+D  DRGF++ +  PL
Sbjct: 62  RLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQDAPL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L 
Sbjct: 122 DMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARSARLV 181

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V+++H
Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAVLAYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           SLEDRLVK+  ++ +         +    +    + +T+   +P +E+V
Sbjct: 242 SLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290


>gi|116626359|ref|YP_828515.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251651|sp|Q01Q40|RSMH_SOLUE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116229521|gb|ABJ88230.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 286

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 25/303 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HVPV+  + I LL   P  V LDAT G GG+S    +      VIA DRD  ++   + 
Sbjct: 1   MHVPVMPAEAIELLAIRPEGVYLDATAGLGGHSGLIARQLTTGTVIANDRDTRSLEMARA 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++ ++      +F  L D V   G + V   + DLGVS  Q+   DRGFSF   GPL
Sbjct: 61  NTAEWSDRMCFHYGSFGSLSDAVSQAGFEKVDGLLADLGVSRYQLTAPDRGFSFMADGPL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A+D+VN  + K L  ++  +GEE++A RIA       ++ P ++T  L+
Sbjct: 121 DMRMDASIQTTAADLVNHTDEKTLADLIYQMGEERRARRIA---RAIVRARPLRSTLHLA 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ V   +  R+HPAT++F ALR+ VN+E  EL + L  A   LK+GG ++V+SF S
Sbjct: 178 DVVERAV--PRTGRLHPATKTFMALRMAVNDEPGELRRLLEIAPGLLKSGGRMVVISFMS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            +DR+VK+ F        A                +TK  + P+ E+   N  SRSAKLR
Sbjct: 236 SDDRMVKEKFKELGQSKQAT--------------ILTKHPLQPSDEESFNNPASRSAKLR 281

Query: 313 AGM 315
           A  
Sbjct: 282 ALE 284


>gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
 gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
          Length = 374

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/326 (30%), Positives = 154/326 (47%), Gaps = 32/326 (9%)

Query: 15  HTIGDHVPVLLEKVIALLN----------------PAPGKVILDATFGAGGYSRSFCKMG 58
                H+PVLLE ++   +                    +V++D T G GG SR+  +  
Sbjct: 52  KEKSPHIPVLLEHMLDTFDRIFLSTHSHYIAKKSLIKNKEVLIDCTLGFGGMSRALLERY 111

Query: 59  SNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD------KGVDGVVFD 110
           SN+  I +DRD +A+   +E+M  +K++F      F+ L   +          + G++ D
Sbjct: 112 SNLHIIGIDRDSYALEYNRESMAKFKDRFQTRHGDFATLLPQIIKEIEANGDHLCGILAD 171

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           +GVSS Q+D  DRGFSF  +           + A  +VN  N  +L  I    GE ++  
Sbjct: 172 IGVSSYQLDSIDRGFSFHSNKLDMRMDRTQSLDADMIVNTYNKYELEEIFKNYGEIREYK 231

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           ++ + IV+ RQ           SL    +      +IHPAT  +QALRI VN+E+ +L  
Sbjct: 232 KLVNLIVQERQRGRIT----ADSLQNIALKLHSKAKIHPATLIYQALRIAVNDELGQLKS 287

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSI 288
            L S +       L  V+SFHSLEDR++K+ F   +   +            + A   S+
Sbjct: 288 LLHSCQNLH--EVLFCVISFHSLEDRMIKESFKQFAKSCICDTTSFKCVCGNNHAKGFSL 345

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAG 314
            KK ++   +++A N+RSRSAKLRA 
Sbjct: 346 YKKPLIADSKEIAQNKRSRSAKLRAF 371


>gi|160878432|ref|YP_001557400.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
 gi|263433271|sp|A9KS30|RSMH1_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|160427098|gb|ABX40661.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
          Length = 366

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/317 (32%), Positives = 157/317 (49%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + + +++  L   PG+  LDAT G GG++R   K      ++ ALD DP  
Sbjct: 63  STPAGMHISICVNEILEFLQIKPGQKGLDATLGYGGHTREMLKCLESQGHMYALDVDPIE 122

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
           +   +E +++     E  ++ Q  F+ + + V + G  D V+ DLGVSSMQID  DRGFS
Sbjct: 123 IVKTRERLQNLGFGPEILTIKQLNFANIDEVVEEAGLFDFVLADLGVSSMQIDDPDRGFS 182

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           F+  GPLD+R++   GISA++ +   +  +L  +L    +E  +  I+ AIV   +    
Sbjct: 183 FKTDGPLDLRLNPEKGISAAERLKTISQTELQGMLLENSDEPYSEEISKAIVNEIKRGNE 242

Query: 185 FQTTQDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  LI K +        K        R+FQALRI VNNE E L   L      L
Sbjct: 243 IDTTTKLRDLISKVLVTIPENEQKEAIKKTCQRTFQALRIDVNNEYEVLYSFLEKLPNVL 302

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + +++FHS EDRLVKK F +     +                 ++  V+ P+ E+
Sbjct: 303 AKGGRVAILTFHSGEDRLVKKSFKNLQRAGIYSE--------------VSDDVIRPSAEE 348

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 349 CNRNPRARSTKMRWAIK 365


>gi|312196214|ref|YP_004016275.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c]
 gi|311227550|gb|ADP80405.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c]
          Length = 341

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 160/299 (53%), Gaps = 10/299 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
               H+PVLL++V  LL P    PG + +DAT G GG++ +  +      ++ LDRDP A
Sbjct: 1   MQASHIPVLLDRVRTLLTPALTQPGAIAVDATLGLGGHAEAMLRALPELRLVGLDRDPQA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++  +E +     +     A + ++   +       V  V+FDLGVSS+Q+D  DRGF++
Sbjct: 61  LAASRERLAFAAGRVEFAHAVYDEIPAVLDRLGIPAVHAVLFDLGVSSLQLDLDDRGFAY 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM   +G +A+DV+N  +   L R+L   GEE  A RIA A+V  R    F 
Sbjct: 121 SRDAPLDMRMDPTTGRTAADVLNTYDEAALARVLRRYGEEPFARRIAAAVVAERAREAFT 180

Query: 187 TTQDLSSLI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           T+  L+ L+       ++    +PA R+FQALRI VN E+E L + L +A   +  GG +
Sbjct: 181 TSSRLADLVRAAIPAAARRTGGNPAKRTFQALRIEVNAELEVLERALPAALDRIAVGGRI 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+++HSLEDRLVK+  A  +   +     +        F+ +T+    PT+ + A N 
Sbjct: 241 AVLAYHSLEDRLVKRALADVTTTRVPPDMPVVPAEAEPTFRLLTRGSEPPTEAETAANP 299


>gi|149178739|ref|ZP_01857322.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797]
 gi|148842437|gb|EDL56817.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797]
          Length = 305

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 167/311 (53%), Gaps = 31/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL +VI  L+ +PG +++D T GAGG+S    K       +I LDRD   +    +
Sbjct: 13  HLPVLLREVITQLDLSPGLIVVDGTVGAGGHSEHILKKINNEGTLIGLDRDAMMLGFATQ 72

Query: 77  TMRD---YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++       +  L Q+++++L   + +  +   D V+ DLG+SS Q+   +RGF F+ +
Sbjct: 73  KLKPESLPAGRCYLRQSSYAELPAVMEELQISSVDRVLLDLGLSSDQLSDDERGFGFESA 132

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           G LD+R     G+ A  ++      +L  IL + GEE+ + RIA+ IVK+R++AP +T  
Sbjct: 133 GELDLRFDTRQGVPAWQLLESLPESELCEILEVYGEERFSQRIANQIVKQRKTAPVRTAA 192

Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLI 246
           DL   +Q+ +        R +PATR FQALRI  N E+E+L   L +   + L+ GG  +
Sbjct: 193 DLIKAVQQAIPGKALAAARKNPATRVFQALRIAANQELEQLETMLETVLPQVLQPGGRAV 252

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+  +                     P   +++T K +V TQ +   N R 
Sbjct: 253 IISFHSLEDRMSSRRLK------------------PGDLKNLTAKPIVATQAEQRVNPRC 294

Query: 307 RSAKLRAGMRT 317
           R+AKLR  ++T
Sbjct: 295 RTAKLRVAVKT 305


>gi|313906115|ref|ZP_07839465.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
 gi|313469055|gb|EFR64407.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
          Length = 356

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+P+++++++  L   PG   LD T G GG+S    ++     ++ +LD DP  
Sbjct: 48  NTPAGMHIPIMVDEILDCLKIEPGMTGLDCTLGYGGHSSRMLELLQGSGHLYSLDVDPIE 107

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
           +    E MR      E ++     F+ +          D V+ DLGVSSMQID  +RGFS
Sbjct: 108 IQKTTERMRAKGFSEEIWTPVHTNFANIDRVCEQYGPFDFVLADLGVSSMQIDNPERGFS 167

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184
           ++  GPLD+R +   G SA++ +   + ++L  +L    +E  A  IA A+     +  P
Sbjct: 168 YKTDGPLDLRFNPSKGESAAERLRSLDTEELIGLLIDNSDEPYAEEIAAAVASAFRKKEP 227

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----------IHPATRSFQALRIFVNNEIEELAQGLR 233
             TT  L  LI KT+      R                R FQALRI VN+E E L + + 
Sbjct: 228 LDTTTALRELITKTLLEDTPLRNALKTDQTEAVKKSCARVFQALRIDVNSEFEVLVEFMD 287

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
                LK GG   +++FHS EDR+VKK F                N    ++  +++ V+
Sbjct: 288 KLPHILKEGGRAAILTFHSGEDRIVKKEFKR--------------NQKDGLYTEVSRDVI 333

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++E+   N R+ S KLR  +R
Sbjct: 334 RPSKEECFRNPRAHSTKLRWAIR 356


>gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           CG14683 [Camponotus floridanus]
          Length = 427

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/325 (34%), Positives = 174/325 (53%), Gaps = 28/325 (8%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79
           PV+ ++V+  ++ +PGK  +D TFGAGG++  F +  S   + ALDRDP A    Q+  +
Sbjct: 103 PVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIKIFALDRDPVAYKYAQQLSQ 162

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            Y  +      TFS+L   +    +        +FD G SSMQI+  +RGFS  K+GPLD
Sbjct: 163 KYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSSMQIEDANRGFSLLKNGPLD 222

Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191
           MRM+      +A+DV+++A  +DL RI+ + G+EK+A +IA AI++ R      +TTQ+L
Sbjct: 223 MRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIARAIIEARYMFRKLETTQEL 282

Query: 192 SSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L++  +             H A ++FQALRIFVNNE+ E+  G+  A   LK  G LI
Sbjct: 283 IQLVESVLDDEIRTDNLDKYSHSAVKTFQALRIFVNNELNEINYGILLANIYLKLSGRLI 342

Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            +SF+SLED ++K+  +               +                  ++ + K V+
Sbjct: 343 TISFNSLEDTIIKRHLSGNITDNVANTVALKYANYGKVFNTNEFQILTEKPWKMMHKHVL 402

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
            PT E++  N +S+SAKLRA M+  
Sbjct: 403 TPTSEEIEINPKSQSAKLRAIMKVK 427


>gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum
           ferrodiazotrophum]
          Length = 305

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 157/303 (51%), Gaps = 21/303 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
              H PV+L + +  L+  PG+  +DA  G GG++R     G +V+A+DRD  AV   +E
Sbjct: 9   SSSHRPVMLAESMEWLDVRPGQWYVDANLGGGGHTREILARGGSVVAIDRDKGAVLAARE 68

Query: 77  -TMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +  Y ++  +       +   V    + V G++FDLG S++Q +  +RG SF + GPL
Sbjct: 69  HLLPLYPDRLRIIHGNNRNVASLVRQEGQHVSGILFDLGWSTIQGEDPERGLSFTEEGPL 128

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMR+       ++ + ++  +     +   G+E  A+ IA A+V+ R+      T    +
Sbjct: 129 DMRLDTEQKETAEDLLESLSESELERVLSEGDEPLAAPIARALVQARREGRLPRTTTALA 188

Query: 194 LIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG-GLLIVVS 249
                VY+    + +R HPATR F ALRI VN E E L + L  A + L A  G LIV+S
Sbjct: 189 AFVSGVYYRKGFRRSRRHPATRVFMALRIRVNREYENLEESLSGARELLSATGGRLIVLS 248

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHS EDR+VK+ F    G+              A F  + ++ +VP  E+V+ N R+RSA
Sbjct: 249 FHSGEDRIVKRCFRLWVGEG------------EAAF--LFRRSLVPGDEEVSLNPRARSA 294

Query: 310 KLR 312
           ++R
Sbjct: 295 RMR 297


>gi|254432433|ref|ZP_05046136.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001]
 gi|197626886|gb|EDY39445.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001]
          Length = 317

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 160/312 (51%), Gaps = 35/312 (11%)

Query: 20  HVPVLLEKVIALLNPAP--------GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H PVL + V+A   P          G +++D T G GG+S    +      +I LD+DP 
Sbjct: 24  HQPVLADAVLASFAPVETLLAEHSGGGLLIDCTLGGGGHSALLLEAHPGLRLIGLDQDPS 83

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A +   E +  + ++ ++    F+   D+ P +    V+ DLGVSS Q+D   RGFSF+ 
Sbjct: 84  ARTAAAERLAPFGDRVTIVATNFA---DHRPSEPALAVLADLGVSSPQLDVAGRGFSFRA 140

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK---RRQSAPF 185
            GPLDMRM+   G +A+ ++++     L  ++   GEE+ + RIA  I +       A  
Sbjct: 141 EGPLDMRMNPEAGETAAALLDRLEEGALADLIYGYGEERLSRRIARRIKEQGPWNDPARP 200

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT +L+ L+      + +  R+HPATR+FQALRI VN+E+  L + L      L+ GGL
Sbjct: 201 RTTAELAWLVGGCYPPAARRGRLHPATRTFQALRIAVNDELGVLGRWLEQVPDWLRPGGL 260

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDRLVK  F                       + +T+K +V   E+   N 
Sbjct: 261 LGVISFHSLEDRLVKTAF-----------------LRDERLERVTRKPLVAAAEEAEANP 303

Query: 305 RSRSAKLRAGMR 316
           RSRSAK R   R
Sbjct: 304 RSRSAKFRVARR 315


>gi|315453816|ref|YP_004074086.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter felis ATCC 49179]
 gi|315132868|emb|CBY83496.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter felis ATCC 49179]
          Length = 288

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 30/305 (9%)

Query: 19  DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
            H  VLL++VI    P   A   +++D T G GG+S +  +   ++  I +DRD  A S 
Sbjct: 1   MHQSVLLQEVIQAFAPLAQARDPLLIDCTLGLGGHSLTLLQTYPHLRIIGIDRDLEASSI 60

Query: 74  GQETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++ +  +  +F+    T++    QL D    +   GV+ DLGVSS+Q+D   RGF F  
Sbjct: 61  AEQRLALHASRFTYRYGTYAEVIAQLIDEGIWQNCHGVLADLGVSSLQLDNPSRGFGFAS 120

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
                   + + + A  V+N  ++ DL ++L   GE + A +IAH IV RR    FQ+  
Sbjct: 121 HTLDMRMDTQASLDAFKVINHYSLYDLEQVL-EKGEVRGAKKIAHLIVNRRHKCLFQSGM 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+  + +     +    HPAT  FQA+R+ VN EI+ L   L  +         L ++S
Sbjct: 180 ELAEFLSQ---HLRRTHHHPATLVFQAVRMEVNAEIQNLRALLEYS--KQLQNAHLAIIS 234

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK  F   +                     ++KK + P ++++  N RSRSA
Sbjct: 235 FHSLEDREVKHTFKEYAKSYGVC---------------LSKKPITPCKQEIQDNPRSRSA 279

Query: 310 KLRAG 314
           K+R  
Sbjct: 280 KMRIF 284


>gi|260438648|ref|ZP_05792464.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
 gi|292809242|gb|EFF68447.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
          Length = 346

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 29/317 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+P+++E+++ +L   PG V LDAT G GG+S    +      ++ +LD DP  
Sbjct: 45  STPAGMHIPIMVEEILDVLKVQPGDVGLDATLGYGGHSGKILEKLKGSGHLYSLDIDPIE 104

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           +   ++ +RD     + F++ +  F  + +        D ++ DLGVSSMQID  +RGFS
Sbjct: 105 IVRTEKRLRDKGFSEDVFTVIRTNFKNIDEVSGTAGKFDFLMADLGVSSMQIDNPERGFS 164

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184
           ++  GPLD+R+    G  AS+ + +    + T +L    +E  A  IA  +     +   
Sbjct: 165 YKNEGPLDLRLDPSKGEPASERLKKLTKDEFTGMLIENSDEPYAKEIATEVFNEFRKKKE 224

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT DL   I+K + F             + R+FQALRI VN+E E L + L+     +
Sbjct: 225 INTTTDLYKAIEKALSFIPEKERKDAVKKSSQRTFQALRIDVNSEFEVLEEFLQKLPDVM 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS EDRLVK++F       M  R  + S             V+ P+  +
Sbjct: 285 KEGGRIAILTFHSGEDRLVKQYFK------MYKRDGVLSEISD---------VIRPSAAE 329

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS KLR  +R
Sbjct: 330 CARNGRARSTKLRWAVR 346


>gi|116329171|ref|YP_798891.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|122283047|sp|Q04Y87|RSMH_LEPBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116121915|gb|ABJ79958.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 316

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 105/288 (36%), Positives = 154/288 (53%), Gaps = 23/288 (7%)

Query: 40  ILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
            LD T G GG+S  F K    S VI  DRDP  +S     + D+KE+    Q  FS++  
Sbjct: 29  FLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEIDS 88

Query: 98  -----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
                +  +    G++ DLG+S+  +    RGFSF+++ PLDMR++ + GI+A DV+N  
Sbjct: 89  NLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINTY 148

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPA 210
           +   L  I    GEE+ + +IA  IV+RR+      T +L+ LI K +         HPA
Sbjct: 149 SKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHPA 208

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
           TR FQALRI VN E+  + +GL S    L+  G++ V+SFHSLEDR+VK    + +    
Sbjct: 209 TRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYA---- 264

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                         F+ +TKK ++P++E+   N  SRSAKLR   +T 
Sbjct: 265 ----------KQNGFELLTKKPILPSEEETKENPASRSAKLRVLRKTK 302


>gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           [Acromyrmex echinatior]
          Length = 325

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 115/325 (35%), Positives = 170/325 (52%), Gaps = 30/325 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81
           + ++V+  + P+PGK  +D TFGAGG++    +      + ALDRDP    C ++  + Y
Sbjct: 1   MAQEVLTYIAPSPGKTYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRY 60

Query: 82  KEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Q       FS+L        + +  +DG++FD G SSMQ D   RGFS  K GPLDMR
Sbjct: 61  PGQVIPLLGKFSELPQLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMR 120

Query: 137 MSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQTTQDL 191
           M          A++V+ +A  +DLTRI+ + G+EK+A +IA   I  R      +TT++L
Sbjct: 121 MDGFRCPKQLTAANVLERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKEL 180

Query: 192 SSLIQKTVYFSKNN-----RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T+             H AT++FQALRIFVNNE+ E+  G+  A+  LK  G LI
Sbjct: 181 AQLIESTLDGEIRRDSLGRFSHSATKTFQALRIFVNNELNEINYGILLAQIYLKLSGCLI 240

Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            +SFHSLED +VK+  +               +                  ++ + K V+
Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKIPWKMMHKHVL 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
           +PT E++  N RSRSAKLRA M+  
Sbjct: 301 IPTAEEIETNPRSRSAKLRAIMKVK 325


>gi|224542006|ref|ZP_03682545.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525063|gb|EEF94168.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM
           15897]
          Length = 348

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ +++++++  L+  PG++ LD T G GG+S    +      ++  LD D   
Sbjct: 44  STPAGMHISIMVDEILEFLDIQPGQIGLDCTLGYGGHSSKMMEKLEGQGHLYGLDIDTIE 103

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
           +    E +R+     + F+     F  +          D V+ DLGVSSMQID  +RGFS
Sbjct: 104 IEKTTERLRNKGYGEDIFTPILTNFRNIDQVSEKYGPFDFVLADLGVSSMQIDNPERGFS 163

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           ++K+GPLD+R++   G  A +++   + ++L  IL    +E  A  +A  I    +S   
Sbjct: 164 YKKNGPLDLRLNPKAGRPAYEILKDLSREELEHILTENSDEPYADILAKNIYSFIRSGME 223

Query: 185 FQTTQDLSSLIQKTVYF--SKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TTQ L  +I KT+ F   KN +      A R FQALRI VN E E L   +      L
Sbjct: 224 VETTQQLYKIIDKTLSFVTDKNRKDIVNKTAARVFQALRIEVNQEFEVLYDFVEKLPLIL 283

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG   +++FHS EDR+VKK F                     +++ + + V+ P++E+
Sbjct: 284 KPGGKAAILTFHSGEDRIVKKSFKELKNLG--------------IYEDVCRNVIRPSREE 329

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R++S K+R  ++
Sbjct: 330 CHRNSRAKSTKMRWAIK 346


>gi|291519694|emb|CBK74915.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4]
          Length = 347

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ +++++++  L   PG+  LD T G GG++R   +       +  LD DP  
Sbjct: 44  STPAGMHISIMVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLEQLQGQGCIYGLDVDPIE 103

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
                E +R +    + F      F+ +     +    D V+ DLGVSSMQID  +RGFS
Sbjct: 104 SKKTVERLRGFGFGEDNFQFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDNPERGFS 163

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184
           ++  GPLD+R+    G SA++ ++    ++   ++    +E  A  IAH +     +  P
Sbjct: 164 YKIDGPLDLRLDPEHGESAAERLHNITEEEFIGMMVENSDEPYAEEIAHKVFTLMAKGNP 223

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L   I + ++                R FQALRI VN+E E L   L      L
Sbjct: 224 MDTTTALREAISEALWKVPKEEKEQAIKKSCARVFQALRIDVNSEFEVLYTFLEKLPGIL 283

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS EDRLVKK F   + + +                 ++  VV P+ E+
Sbjct: 284 KPGGRVAILTFHSGEDRLVKKSFKELAKEGVYSE--------------VSSDVVRPSAEE 329

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RS+S K+R  ++
Sbjct: 330 CRINPRSKSTKMRWAVK 346


>gi|116330221|ref|YP_799939.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282016|sp|Q04V89|RSMH_LEPBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116123910|gb|ABJ75181.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 316

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 105/288 (36%), Positives = 154/288 (53%), Gaps = 23/288 (7%)

Query: 40  ILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
            LD T G GG+S  F K    S VI  DRDP  +S     + D+KE+    Q  FS++  
Sbjct: 29  FLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEIDS 88

Query: 98  -----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
                +  +    G++ DLG+S+  +    RGFSF+++ PLDMR++ + GI+A DV+N  
Sbjct: 89  NLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINTY 148

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPA 210
           +   L  I    GEE+ + +IA  IV+RR+      T +L+ LI K +         HPA
Sbjct: 149 SKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHPA 208

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
           TR FQALRI VN E+  + +GL S    L+  G++ V+SFHSLEDR+VK    + +    
Sbjct: 209 TRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYA---- 264

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                         F+ +TKK ++P++E+   N  SRSAKLR   +T 
Sbjct: 265 ----------KQNGFELLTKKPILPSEEETKENPASRSAKLRVLRKTK 302


>gi|224029029|gb|ACN33590.1| unknown [Zea mays]
          Length = 436

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/349 (33%), Positives = 158/349 (45%), Gaps = 51/349 (14%)

Query: 20  HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDP------- 68
           H+PVLL +V+A    P P +  +D T GA G+S +  +    +   I +D DP       
Sbjct: 88  HIPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALGIGH 147

Query: 69  ---FAVSCGQETMRDYKE---------------QFSLFQATFSQLQD--YVPDKGVDGVV 108
               A   G+E   +  E                F   +   S + +   V   GVDG++
Sbjct: 148 GHIEAFLAGREREANGGEDDALLGTLRAYTHVKNFKYIKQVLSSVDESLVVGSSGVDGIL 207

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
            DLG+SSMQ++  +RGFS  + GPLDMRM       A D++N     +L RIL   GEE 
Sbjct: 208 IDLGMSSMQVNKSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPELELGRILREYGEES 267

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSL--IQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
               +   IVK R      +T DL  L     T+   +   I  +TR FQALRI VN+E+
Sbjct: 268 NWQSVQKQIVKARSVGGLHSTGDLVKLIQRMCTISSGRQGWIKTSTRVFQALRIAVNDEL 327

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF---------ASRSGKVMAVRHMI 276
             L   L S    L  GG L V+SFHSLEDR+VKK F              K       I
Sbjct: 328 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEANEEDDKDDQALTDI 387

Query: 277 PSNAHPAVFQS--------ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                P   Q         +TK+ + P+QE+   N+R RSAKLR   +T
Sbjct: 388 EDGDEPWSGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKT 436


>gi|226322767|ref|ZP_03798285.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758]
 gi|225208748|gb|EEG91102.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758]
          Length = 356

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/318 (29%), Positives = 165/318 (51%), Gaps = 29/318 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  L   PG+V  DAT G GG++++  +      ++ A D DP  
Sbjct: 51  NTPAGMHISIMVQEILDFLKIQPGEVGFDATLGYGGHTKAMLQCLEGKGHIYATDVDPEE 110

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 111 SAKTKKRLEEQGFGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 170

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI  + R+   
Sbjct: 171 FKVDGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITEEIRKGHR 230

Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             TT  L  +I++T+ F   N+           R+FQALRI VN+E E L + +     A
Sbjct: 231 IDTTTKLRQVIEQTLSFLPENKEKKDIIRKTCQRTFQALRIDVNHEFEVLYEFMEKLPGA 290

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK GG + +++FHS ED+LVKK   +   + +   +               K VV P+ E
Sbjct: 291 LKPGGRVAILTFHSGEDKLVKKALKAGYREGVYSEYA--------------KDVVRPSAE 336

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N R+RS K+R  ++
Sbjct: 337 ECAQNGRARSTKMRWAVK 354


>gi|242060440|ref|XP_002451509.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor]
 gi|241931340|gb|EES04485.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor]
          Length = 445

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/349 (32%), Positives = 160/349 (45%), Gaps = 52/349 (14%)

Query: 20  HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
           HVPVLL +V+A    P P +  +D T GA G+S +  +    +   I +D DP A+  G+
Sbjct: 96  HVPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALEIGR 155

Query: 76  ------------ETMRDYKEQFSLFQATFSQLQDYVPDKGV---------------DGVV 108
                       E     ++        ++ ++++   K V               DG++
Sbjct: 156 GHIETFLAGREREANGREEDVLQETLRAYTHVKNFKYIKQVLGSVDESLAVGSSGVDGIL 215

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
            DLG+SSMQ++  +RGFS  + GPLDMRM       A D++N     +L RIL   GEE 
Sbjct: 216 IDLGMSSMQVNRSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPEIELGRILREYGEES 275

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSL--IQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
               +   IVK R +    +T DL  L     ++   +   I  ATR FQALRI VN+E+
Sbjct: 276 NWQSVQKQIVKARATGGLHSTGDLVKLIQRMCSISSGRQGWIKTATRVFQALRIAVNDEL 335

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM---------- 275
             L   L S    L  GG L V+SFHSLEDR+VKK F        A              
Sbjct: 336 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEADDEEDDKDDLALTD 395

Query: 276 IPSNAHPAVFQS--------ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           I +   P   Q         +TK+ + P+QE+   N+R RSAKLR   +
Sbjct: 396 IVNEDEPWFGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQK 444


>gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           CG14683 [Harpegnathos saltator]
          Length = 325

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 172/325 (52%), Gaps = 30/325 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81
           + ++V++ + P+PGK  +D TFGAGG++    +      + ALDRD  A    Q+  + Y
Sbjct: 1   MAQEVLSYIEPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKY 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Q       FS+L   +         +DG +FD G SSMQ D G RGFS  K GPLDMR
Sbjct: 61  PGQVIPLLGKFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMR 120

Query: 137 MSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191
           M     S    A+DV+ +A  +DL RI+   G+EK+A +IA AI++ R      +TT++L
Sbjct: 121 MDGFRCSGQPTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTREL 180

Query: 192 SSLIQKTVYFSKNN-----RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T+             H AT++FQALRIFVNNE+ E+   +  A   LK  G LI
Sbjct: 181 AELIESTLSDEIRKDNLGRFSHNATKTFQALRIFVNNELNEINYAMLLARIYLKVTGRLI 240

Query: 247 VVSFHSLEDRLVKKFFASR---------SGKVMAVRHMIPSNA----HPAVFQSITKKVV 293
            +SFHSLED +VK+  +           S K      +  +N         ++ + K V+
Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANELEMLTQTPWKMMHKHVL 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
           +PT E++  N R+RSAK RA ++  
Sbjct: 301 LPTAEEIETNPRARSAKFRAILKVK 325


>gi|302669504|ref|YP_003829464.1| S-adenosyl-methyltransferase MraW family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302393977|gb|ADL32882.1| S-adenosyl-methyltransferase MraW family [Butyrivibrio
           proteoclasticus B316]
          Length = 347

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ +++++++ +L   PG+  LD T G GG++R   +       +  LD DP  
Sbjct: 44  STPAGMHISIMVKEILEVLKIQPGEQGLDCTLGYGGHTRKMLEQLTGKGCIYGLDVDPIE 103

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +   E +R+       F      F+ +     +    D V+ DLGVSSMQID   RGFS
Sbjct: 104 SAKTVERLRNAGFDENAFKFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDDPKRGFS 163

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184
           ++  GPLD+R+    G SA++ ++     +   +L    +E  A  IA  +    ++  P
Sbjct: 164 YKIDGPLDLRLDPEHGESAAERLHNITRDEFVGMLVENSDEPYAEEIADKVFNLMKKGDP 223

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L S I+  ++                R FQALRI VN+E E L   L      L
Sbjct: 224 MDTTTALRSAIENALWKLPKEEKDQAIKKSCARVFQALRIDVNSEFEVLYSFLEKLPGIL 283

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             G  + +++FHS EDRLVKK F                     +F  I++ V+ P+ E+
Sbjct: 284 NPGARVAILTFHSGEDRLVKKAFKE--------------CKKAGLFSEISEDVIRPSAEE 329

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RS+S K+R  ++
Sbjct: 330 CRVNPRSKSTKMRWAIK 346


>gi|325973262|ref|YP_004250326.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois]
 gi|323651864|gb|ADX97946.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois]
          Length = 304

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+PV+L +V      +   + +D TFG GG+S+ F K       +I +D DP  +   +
Sbjct: 1   MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKEFLKSLGVNSRLIGMDVDPKVIPYAE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131
           E +     +FS     ++ +++Y         DG++FDLG+S++Q+   +R FS+   S 
Sbjct: 61  E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            L++R    G S  +++N    K L  I    G   +A R+   I++ R++ P      L
Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVNQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+++   +K    +P    FQ+LRI  NNE+    + LR A + LK  G L++++F 
Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFQ 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED +V ++    S  +            P  F   +   ++P++ ++  N  SRSA+L
Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAEL 296

Query: 312 RAGMRTVE 319
               +T E
Sbjct: 297 WVFTKTRE 304


>gi|239624706|ref|ZP_04667737.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521092|gb|EEQ60958.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium
           1_7_47FAA]
          Length = 362

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/318 (31%), Positives = 161/318 (50%), Gaps = 28/318 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+ +++++++  L   PG+  LDAT G GG+++   K      ++ ALD D   
Sbjct: 59  STPVGMHISIMVKEILDFLEIQPGQTGLDATLGYGGHTQEMLKCLQGQGHLHALDVDTIE 118

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
           ++  +E +       E  ++ Q  F+ +     +    D V+ DLGVSSMQID  +RGFS
Sbjct: 119 MAKTRERLGKLGYGLEILTIRQLNFADIDQLAAETGPFDFVLADLGVSSMQIDNPERGFS 178

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           F+K GPLD+R+    GI AS+ +   + ++LT +L    +E  A  I+ A+V R +    
Sbjct: 179 FKKDGPLDLRLDSSRGIPASERLRHISREELTGMLIENSDEPYAEEISRAVVNRIKRGDG 238

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L   I++T+ F      K        R+FQALRI +N+E E L Q L      L
Sbjct: 239 IDTTTQLRETIEQTLSFIPESDRKEAVKKSCQRTFQALRIDINSEFEVLYQFLEKLPDVL 298

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + V++FHS EDR+VKK F     + +                 I   V+ P+ E+
Sbjct: 299 AKGGRVAVLTFHSGEDRIVKKSFKDLYRQGVYSE--------------IAGDVIRPSAEE 344

Query: 300 VAFNRRSRSAKLRAGMRT 317
            + N R+RS K+R  +++
Sbjct: 345 CSMNSRARSTKMRWAIKS 362


>gi|266625237|ref|ZP_06118172.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
 gi|288862867|gb|EFC95165.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
          Length = 349

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 99/317 (31%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + + +++  L   PG+  LDAT G GG++R   K      ++ ALD DP  
Sbjct: 46  STPAGMHLSICVREILDFLQIKPGQKGLDATLGYGGHTREMLKCLQSQGHLYALDVDPIE 105

Query: 71  VSCGQETMRDY---KEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
           ++  +E ++      E  ++ Q  F+ +     +    D V+ DLGVSSMQID  DRGFS
Sbjct: 106 LAKTRERLQSQGFGPEILTIIQENFANIDRVAAEVGPFDFVLADLGVSSMQIDNPDRGFS 165

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           ++  GPLD+R++   GI+A++ +     ++L  +L    +E  A  IA   + + R+  P
Sbjct: 166 YKTEGPLDLRLNPEKGITAAERLQTIEEEELRGMLLENADEPYAEEIARAVVQEIRRGNP 225

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+K +        K        R+FQALRI VN+E E L   L      L
Sbjct: 226 IDTTTRLRQVIEKALSRVPAADRKEAVKKSCQRTFQALRIDVNSEFEVLYSFLEKLPDVL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + V++FHS EDRLVKK F     + +                     V+ P+ E+
Sbjct: 286 APGGRVAVLTFHSGEDRLVKKSFKRLKKEGVYSEIADE--------------VIRPSAEE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 332 CLRNGRARSTKMRWAVK 348


>gi|123965435|ref|YP_001010516.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9515]
 gi|262824968|sp|A2BUE8|RSMH_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123199801|gb|ABM71409.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 300

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 30/312 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLN----PAPGK-VILDATFGAGGYSRSFCKMGSNV--IALDR 66
           + ++ +H  V+ ++++  ++     +  K   +DAT G GG+S    K   ++  I LD 
Sbjct: 7   NSSLFNHKSVMTDEILYSIDQYPFISDNKLTAIDATLGGGGHSYQLLKKYPDLKIIGLDH 66

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A       + ++K +  +  + FS    + P + V  V+ DLGV+S QID  +RGFS
Sbjct: 67  DPIARESALNKLEEFKSRIEIIPSNFSN---FEPKEKVSFVIADLGVNSNQIDSPERGFS 123

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           FQK GPLDMRM+    ++A +++   + KDL  ++   G+E+ + +I+  I K  +    
Sbjct: 124 FQKDGPLDMRMNPLIKMNAENLIETLSEKDLADLIFKFGDERLSRKISRKIKKDLKEKGK 183

Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              T     S+        +  +IHPATR+FQALRI VNNEIE L + L+ A   L  GG
Sbjct: 184 YSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNNEIEALEKFLKIAPDWLLTGG 243

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++ ++SFHS+EDRLVK  F                       +++TKK + P ++++  N
Sbjct: 244 IISIISFHSIEDRLVKNSFKG-----------------DYRLKNLTKKPITPNKKEIENN 286

Query: 304 RRSRSAKLRAGM 315
           +RSRSAKLR   
Sbjct: 287 KRSRSAKLRIAQ 298


>gi|302387032|ref|YP_003822854.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
 gi|302197660|gb|ADL05231.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
          Length = 349

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 103/318 (32%), Positives = 157/318 (49%), Gaps = 28/318 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H  + +++++  L   PG+  LDAT G GG++    K      ++ A D D   
Sbjct: 46  NTPAGMHRSICVKEILDFLQITPGQTGLDATLGYGGHTLEMLKCLNSKGHLYATDVDSIE 105

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFS 126
           +   +E +       E  ++ Q  FS +     + G  + ++ DLGVSSMQID  +RGFS
Sbjct: 106 LPRTRERLEHLGYGSEILTIRQTNFSNIDQITSESGPLNFILADLGVSSMQIDNPERGFS 165

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           F+  GPLD+R++   GISA+D +   + ++L  +L    +E  A+ IA AIV   +    
Sbjct: 166 FKTEGPLDLRLNPSKGISAADRLKTISQEELHGMLLENADEPHAAEIAGAIVTAIKKGTD 225

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +IQ  + F               RSFQALRI VNNE E L + L     AL
Sbjct: 226 ITTTSQLQQIIQDALKFIPEKERNNEIKKSCQRSFQALRIDVNNEFEVLYEFLEKLPAAL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + +++FHS EDRLVKK F                     V++ IT + + P+  +
Sbjct: 286 AEGGRVAILTFHSGEDRLVKKSFQRF--------------YREGVYKEITPEAIRPSAAE 331

Query: 300 VAFNRRSRSAKLRAGMRT 317
            + N R+R AKLR  +++
Sbjct: 332 CSSNSRARCAKLRWAIKS 349


>gi|33860731|ref|NP_892292.1| hypothetical protein PMM0171 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|42559450|sp|Q7V3B1|RSMH_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33633673|emb|CAE18630.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 300

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 107/318 (33%), Positives = 162/318 (50%), Gaps = 31/318 (9%)

Query: 9   MSSAIHHTI-GDHVPVLLEKVIAL-----LNPAPGKVILDATFGAGGYSRSFCKMGSNV- 61
           M + +  +   +H  V+ ++++       L        +DAT G GG+S    K   ++ 
Sbjct: 1   MQTDLSDSSLFNHKSVMTDEILVSVDQYPLISDNKLTAIDATLGGGGHSYQLLKKYPDLK 60

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            I LD DPFA       + ++K +  +  + F+    + P + V  V+ DLGV+S QID 
Sbjct: 61  IIGLDHDPFARQSAFIKLEEFKSRIEICPSNFAN---FEPKEKVSFVIADLGVNSNQIDN 117

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSFQK GPLDMRM+    ++A D++   N KDL  ++   G+E+ + +I+  I K 
Sbjct: 118 PQRGFSFQKDGPLDMRMNPLLEMNAEDLIETLNEKDLADLIFKFGDERLSRKISRRIKKD 177

Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            Q       T     S+        +  +IHPATR+FQALRI VN EIE L + L  A  
Sbjct: 178 LQEKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNKEIEALERFLELAPN 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG++ ++SFHS+EDRLVK  F                       +++TKK + P +
Sbjct: 238 WLLPGGIISIISFHSIEDRLVKNSFKGDE-----------------RLKNLTKKPITPNE 280

Query: 298 EDVAFNRRSRSAKLRAGM 315
           +++  N+RSRSAKLR   
Sbjct: 281 KEIENNKRSRSAKLRIAQ 298


>gi|262195180|ref|YP_003266389.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365]
 gi|262078527|gb|ACY14496.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365]
          Length = 319

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 167/323 (51%), Gaps = 35/323 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILD---------------ATFGAGGYSRSFCKMGSNVIAL 64
           H+PVL E+V+A ++P PG V  D               A                 +  +
Sbjct: 9   HLPVLKEEVLAHMSPRPGGVYCDGTLGGGGHAGAVLARA------------NPDGRLYGI 56

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
           DRD  A++  Q  + D+ E+    + T+    + + +     +DG++ D+G SS Q D  
Sbjct: 57  DRDATALAAAQRALADFGERVQFLRGTYGYADELLAEAGAPPLDGILLDIGPSSPQFDRA 116

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GP+DMRM   SG +A D++ +    +L  IL   GEE+ + RIA  I    
Sbjct: 117 ERGFSFLRPGPIDMRMDQSSGETALDLMRRLGPGELADILWSFGEERFSKRIAARIKDAV 176

Query: 181 QSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    +TT DL++L++  +     +  + HPAT++FQALRI VN E+++LA+ LR     
Sbjct: 177 RDHRLETTTDLAALVEDAIPASVRRQMKTHPATKTFQALRIAVNGELDQLARFLRVFPPL 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPT 296
           L  GG  +++SFHSLEDRLVK+ F   +        +  +       V   +T+K V  +
Sbjct: 237 LAPGGRCVIISFHSLEDRLVKRAFRDLAWSSRLPPDLARAAGERIEPVCVPVTRKAVFAS 296

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
           ++++A N R+RSA+LRA  +   
Sbjct: 297 EDEIASNPRARSARLRACEKVAA 319


>gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group]
 gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group]
 gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group]
          Length = 436

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 111/349 (31%), Positives = 162/349 (46%), Gaps = 47/349 (13%)

Query: 15  HTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFA 70
           H+  +HVPV+L +V+A    P P +  +D T GA G+S +  +    +   I +D DP A
Sbjct: 87  HSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSA 146

Query: 71  VSCGQETMRD-----------------------YKEQFSLFQATFSQLQD--YVPDKGVD 105
           +  G+  +                         + + F   +     + +   V   GVD
Sbjct: 147 LEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206

Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILG 164
           G++ DLG+SSMQ++  DRGFS  + GPLDMRM       A D++N     ++ RIL   G
Sbjct: 207 GILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLEVGRILRDYG 266

Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVN 222
           EE     +   IVK R      +T +L  LIQ+T   S  +   I  ATR FQALRI VN
Sbjct: 267 EESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRVFQALRIAVN 326

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI------ 276
           +E+  L   L +    L   G L V+SFHSLEDR+VK+ F     +              
Sbjct: 327 DELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSAD 386

Query: 277 PSNAHPAVFQ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +     F+          +TK+ + P+QE+   N+R RSAKLR   +
Sbjct: 387 IDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 435


>gi|160940252|ref|ZP_02087597.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436832|gb|EDP14599.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC
           BAA-613]
          Length = 367

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 28/320 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+P+++ +++  L   PG+  LDAT G GG++    +      ++ ALD D   
Sbjct: 59  STPVGMHIPIMVNEILEFLQIQPGQTGLDATLGYGGHTSRMLERLESKGHIYALDVDSIE 118

Query: 71  VSCGQETMRDY---KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFS 126
           +   ++ +       E  ++ +  F+ +     + G  D V+ DLGVSSMQID   RGFS
Sbjct: 119 MEKTRQRLEHMGYGPEILTIRKLNFANIDQIAGEFGPLDFVLADLGVSSMQIDNPSRGFS 178

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAP 184
           F+K GPLD+R+    G  AS+ +     ++LT +L    +E  A  IA   + + ++   
Sbjct: 179 FKKEGPLDLRLDPLKGEPASERLKGLTQEELTGMLMENSDEPYAEEIARTVMGEIKRGRE 238

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  ++ + + F      K        R+FQALRI VN+E E L + L      L
Sbjct: 239 VATTTRLYEMVDRALAFIPEEERKEAVKKSCQRTFQALRIDVNSEFEVLYEFLDKLPGVL 298

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG   +++FHS EDR+VKK F       +  +              +   V+ P+ E+
Sbjct: 299 KPGGRAAILTFHSGEDRIVKKSFKEMYRAGLYSQ--------------VAGDVIRPSAEE 344

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
              N R+ S K+R  ++  +
Sbjct: 345 CRMNSRAHSTKMRWAIKAED 364


>gi|325182849|emb|CCA17304.1| SadenosylLmethioninedependent methyltransferase mraWlike protein
           putative [Albugo laibachii Nc14]
          Length = 365

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 167/334 (50%), Gaps = 36/334 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
            HVPVL++ V  LL     KV    +DAT G  G+++   +   N+  + +DRDP  +S 
Sbjct: 30  YHVPVLIKSVTKLLVSEEMKVPRYFVDATVGCAGHAQKILESDPNIRMLCIDRDPEVLSI 89

Query: 74  GQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + ++ +  +      +++ L+++         V G++ DLGV+S+  D  +RGFS+ +
Sbjct: 90  ATDNLKKFTSRVKFVNGSYADLENHLKVSGFPSEVSGILVDLGVNSLHYDKPERGFSWLR 149

Query: 130 SGPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---- 182
            GPL+MR   S  +    +D++  ++  +LTRI    GE K A   A AIV++R++    
Sbjct: 150 DGPLNMRFDESDSTIDCAADILQTSSEVELTRIFREYGELKCAKEYAKAIVRKRETAAPG 209

Query: 183 -APFQTTQDLSSLIQKTVYFSKNNRIHPA--------------TRSFQALRIFVNNEIEE 227
              F+TT  L   I++     +  R+ P+              T  FQALRI VN E+  
Sbjct: 210 SRAFETTFHLRDAIEEVAAKWRPKRLSPSHASKTNRSSLARPITGCFQALRIQVNKELAH 269

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-----HP 282
           + +G+      L  G  L+ ++FHSLEDR +K+ F + + ++   +              
Sbjct: 270 VHEGVPVLANHLTPGARLVTIAFHSLEDRPIKQIFRTLAHELKDGQLDSLQCDLSKSLRG 329

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             F+ I KKVV P +E+V  N RSRSA+LR   R
Sbjct: 330 KTFRFINKKVVKPCREEVVENPRSRSARLRCLER 363


>gi|167745358|ref|ZP_02417485.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662]
 gi|167655079|gb|EDR99208.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662]
          Length = 367

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 155/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD D   
Sbjct: 64  STPAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIE 123

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
           +   ++ +       E  ++ Q  F+ +     +    D V+ DLGVSSMQID  DRGFS
Sbjct: 124 LEKTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFS 183

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           ++  GPLD+R++   G+SA++ +     ++L  +L    +E  A  IA   + K ++   
Sbjct: 184 YKTEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGTA 243

Query: 185 FQTTQDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++ +     +  K        R+FQALRI VN+E E L + L      L
Sbjct: 244 IDTTTKLREVIEEALEFLPEHEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVL 303

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG   +++FHS EDRLVKK F                     V+Q I+  V+ P+ E+
Sbjct: 304 AKGGRAAILTFHSGEDRLVKKSFKRL--------------LREGVYQEISTDVIRPSAEE 349

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 350 CRMNSRARSTKMRWAIK 366


>gi|198282533|ref|YP_002218854.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665162|ref|YP_002424723.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|263433385|sp|B5ELD1|RSMH_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433699|sp|B7J3W0|RSMH_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|198247054|gb|ACH82647.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517375|gb|ACK77961.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 321

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 126/325 (38%), Positives = 175/325 (53%), Gaps = 15/325 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA-PGK---VILDATFGAGGYSRSFCKMG---SNV 61
           M SA +     HV VLL + I  L PA         +DAT G GG+S +          +
Sbjct: 1   MRSA-NEPDATHVAVLLAETIVALRPALHTGAAVRCVDATGGRGGHSAALLAELGAADTL 59

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118
           + LDRDP A++  +        +  + QA FSQL + +     + VD ++ DLGVSS Q+
Sbjct: 60  LILDRDPSAIAALRARFAQ-DSRVYIRQARFSQLAEVLAALEWERVDAILADLGVSSPQL 118

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D   RGFSF + GPLDMRM   +  SA++ +  A   D+TR+L   GEE+ A  IA AI+
Sbjct: 119 DEAARGFSFLRDGPLDMRMDPGADRSAAEWLATATEADMTRVLREYGEERFARPIARAIL 178

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R+ AP   T  L+ LI + +   +  + HPATRSFQ +RIF+N E+EEL   L  A  
Sbjct: 179 RAREQAPITRTLQLAELIAQVLPRHETGQ-HPATRSFQGIRIFINRELEELEAFLPQAMN 237

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL+AGG L V+SFHSLEDRLVK+FF +   ++ A   +  S   P  +     K +    
Sbjct: 238 ALRAGGRLAVISFHSLEDRLVKRFFRADDYRISADVPLRASELPPLPWHP-AGKALRAGP 296

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSI 322
            +   N RSRSA LR   R+   + 
Sbjct: 297 RETRDNPRSRSAVLRVAERSERHAA 321


>gi|291539383|emb|CBL12494.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis XB6B4]
          Length = 350

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 162/317 (51%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  LN  PG+   DAT G GG++++         ++ A D DP  
Sbjct: 47  NTPAGMHISIMVQEILDTLNIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ ++    ++L  +L    +E     +A AI  + R+ + 
Sbjct: 167 FKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSR 226

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+KT+ F      K+       R+FQALRI VN E E L + +     AL
Sbjct: 227 IDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDAL 286

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS ED+LVKK         +   +              +K VV P+ ++
Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKEGCRAGIYADY--------------SKDVVRPSAQE 332

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 333 CAQNGRARSTKMRWAVR 349


>gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
 gi|263433292|sp|A6TUM7|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
          Length = 349

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/317 (31%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H  + + +++  L   PG+  LDAT G GG++    K      ++ A+D D   
Sbjct: 46  STPAGMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRLNSKGHLYAIDVDSIE 105

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFS 126
           +   QE +       E  ++ Q  FS +     + G  + V+ DLGVSSMQID  +RGFS
Sbjct: 106 LPRTQERLEGLGYGSEILTIKQMNFSNIDQIALESGPLNFVLADLGVSSMQIDNPERGFS 165

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           F+  GPLD+R++ + GISA+  +   +  +L  +L    +E  ++ I+   I + ++   
Sbjct: 166 FKSEGPLDLRLNPNRGISAAARLKTISQDELQGMLLENADEPNSAAISRAIISEIKKGID 225

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+  + F   N           R FQALRI VN+E E L + L      L
Sbjct: 226 ISTTTQLQQIIKDALKFIPQNTRKDEIKKSCQRCFQALRIDVNDEFEMLYEFLEKLPATL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + ++SFHS EDRLVKK F                     V++ I    + P+ E+
Sbjct: 286 AEGGRVAILSFHSGEDRLVKKSFQRF--------------FREGVYREIAPNFIRPSTEE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RSAKLR  ++
Sbjct: 332 CNTNGRARSAKLRWAIK 348


>gi|291523776|emb|CBK89363.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629]
          Length = 349

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++ A D DP  
Sbjct: 45  NTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIE 104

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
               ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID  +RGFS
Sbjct: 105 SEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFS 164

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++ + GISA++ ++  + ++L+ +L    +E     +A AI  + R+   
Sbjct: 165 FKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNR 224

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++T+ F      K+       R+FQALRI VN+E E L + +     AL
Sbjct: 225 IDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG   +++FHS ED+LVKK   +     +   +              +K V+ P+ ++
Sbjct: 285 KPGGRAAILTFHSGEDKLVKKALKAGYKAGIYSDY--------------SKDVIRPSAQE 330

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 331 CAQNGRARSTKMRWAVR 347


>gi|312601353|gb|ADQ90608.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma hyopneumoniae 168]
          Length = 291

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 148/295 (50%), Gaps = 16/295 (5%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81
           +LE++I  L   P    +D T G GG+S +  +      ++  D+D  A+   +  +   
Sbjct: 1   MLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPKLLAL 60

Query: 82  KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           K+   +  + FS+   Y+ +   + VDG + DLGVSS QID  +RGFS+ K G LDMRM 
Sbjct: 61  KQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLDMRMD 120

Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S   SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L +L++K
Sbjct: 121 KSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVNLVKK 177

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +      + +     FQA+RI VNNE++ L + L    K LK G  + +++FHSLEDR+
Sbjct: 178 VIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHSLEDRI 237

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           VKK F     K                F     KV  P   ++  N R++SAKLR
Sbjct: 238 VKKAFLDLIRKDKLE----FFQKGLPKFSM---KVFRPKANELKSNPRAKSAKLR 285


>gi|309804817|ref|ZP_07698881.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           09V1-c]
 gi|309806276|ref|ZP_07700289.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           03V1-b]
 gi|308165927|gb|EFO68146.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           09V1-c]
 gi|308167260|gb|EFO69426.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           03V1-b]
          Length = 280

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 13/262 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 3   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 63  AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182

Query: 184 PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFAS 264
           G + V++F SLED++VKK+  +
Sbjct: 243 GRICVITFQSLEDKIVKKYSKN 264


>gi|291528759|emb|CBK94345.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1]
          Length = 349

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           +   G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++ A D DP  
Sbjct: 45  NTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGHGHMFATDVDPIE 104

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
               ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID  +RGFS
Sbjct: 105 SEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFS 164

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++ + GISA++ ++  + ++L+ +L    +E     +A AI  + R+   
Sbjct: 165 FKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNR 224

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++T+ F      K+       R+FQALRI VN+E E L + +     AL
Sbjct: 225 IDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG   +++FHS ED+LVKK   +     +   +              +K V+ P+ ++
Sbjct: 285 KPGGRAAILTFHSGEDKLVKKALKAGYKAGIYSDY--------------SKDVIRPSAQE 330

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 331 CAQNGRARSTKMRWAVR 347


>gi|309809920|ref|ZP_07703768.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169708|gb|EFO71753.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN
           2503V10-D]
          Length = 280

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 13/262 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
               H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+  
Sbjct: 3   MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62

Query: 74  GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            ++        + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RG
Sbjct: 63  AKKSFLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++ +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV +R   
Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182

Query: 184 PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK G
Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFAS 264
           G + V++F SLED++VKK+  +
Sbjct: 243 GRICVITFQSLEDKIVKKYSKN 264


>gi|317121700|ref|YP_004101703.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM
           12885]
 gi|315591680|gb|ADU50976.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM
           12885]
          Length = 342

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 117/326 (35%), Positives = 168/326 (51%), Gaps = 44/326 (13%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILD----------------ATFGAGGYSRSFC 55
           A       HVPVLL +V+A L P PG   +D                             
Sbjct: 38  ATAPDGAPHVPVLLREVVAYLAPRPGGRYVDGTVGAGGHAAAVLAAA------------- 84

Query: 56  KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112
              + ++ +DRDP A++     +  +  +  L    F  L+ ++ D     VDG++ DLG
Sbjct: 85  GGEAELLGIDRDPAALALAARRLAPFGARVRLVHGNFRGLEQHLEDAGWDAVDGILLDLG 144

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQ+D   RGFS+Q+ GPLDMRM  S   +A+D+VN A    L R +   GEE+ A R
Sbjct: 145 VSSMQLDDPSRGFSYQEEGPLDMRMDPSQPVTAADLVNTAGRDQLARWIAEYGEERWAGR 204

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQ-KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  IV  R+  P  TT  L  +I+      ++    HPA R+FQALRI VN E++ L +
Sbjct: 205 IADFIVAARRRRPITTTTQLVEIIKAAIPARARRRGGHPARRTFQALRIAVNGELDGLEE 264

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L+ A + L+ GG ++V++FHSLEDR VK+ F + +            +   A F+ +T+
Sbjct: 265 FLQQAARRLRPGGRMVVIAFHSLEDRAVKRAFRALAAP----------DGGAAPFRLLTR 314

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + V P +E+   N RSRSAKLRA  R
Sbjct: 315 RPVTPGEEEAQANPRSRSAKLRAIER 340


>gi|240145398|ref|ZP_04743999.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
 gi|257202523|gb|EEV00808.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
          Length = 350

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 161/317 (50%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  L   PG+   DAT G GG++++         ++ A D DP  
Sbjct: 47  NTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ ++    ++L  +L    +E     +A AI  + R+ + 
Sbjct: 167 FKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSR 226

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+KT+ F      K+       R+FQALRI VN E E L + +     AL
Sbjct: 227 IDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDAL 286

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS ED+LVKK         +   +              +K VV P+ ++
Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKEGCRAGIYADY--------------SKDVVRPSAQE 332

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 333 CAQNGRARSTKMRWAVR 349


>gi|260881478|ref|ZP_05404498.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
 gi|260848533|gb|EEX68540.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
          Length = 369

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 165/324 (50%), Gaps = 35/324 (10%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+P+++++++ +L   PG+   DAT G GG++ +  +      ++   D DP  
Sbjct: 58  NTPAGTHIPIMVKEILEVLAIKPGERGFDATLGYGGHTLAMLEKLEGKGHLYGGDVDPIE 117

Query: 71  VSCGQETMRDY---KEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
               +  +R      + +   Q  F ++     +    D V+ DLGVSSMQID  +RGF+
Sbjct: 118 SEKTEARIRAKGFGPDIWERRQMNFCEIDKLAEEVGPFDFVLADLGVSSMQIDNPERGFT 177

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  GPLD+R++   GISA+D + Q + ++L  ++    +E  A  IA  IV+  +  P 
Sbjct: 178 YKSDGPLDLRLNPQAGISAADRLRQLDYEELVGMMQENADEPYAEAIARQIVRAEKHRPI 237

Query: 186 QTTQDLSSLIQKT-------------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           +TT++L ++I+               +   ++     + R FQALRI VN+E E L + +
Sbjct: 238 RTTRELYAVIEAALEKVHLPRDAAGKIPDRRDVIRKSSARVFQALRIDVNHEYEVLYEFM 297

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
                AL  GG + +++FHS EDR+VKK F +                   +++ I ++V
Sbjct: 298 EKLPYALAPGGRVAILTFHSGEDRIVKKAFKAF--------------HQQGIYRDIAREV 343

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           + P++E+   N R+ S KLR  +R
Sbjct: 344 IRPSREECYENSRAHSTKLRWAIR 367


>gi|148828289|ref|YP_001293042.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG]
 gi|263456035|sp|A5UIQ3|RSMH_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148719531|gb|ABR00659.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG]
          Length = 289

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 107/291 (36%), Positives = 156/291 (53%), Gaps = 16/291 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +SA    T+ LS   Q           K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
              L   G L ++SFHSLEDR+VK F  ++    +  +         +V +
Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKNKVRARIFPKVYHCEKIKFSVIK 288


>gi|225375865|ref|ZP_03753086.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM
           16841]
 gi|225212300|gb|EEG94654.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM
           16841]
          Length = 355

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 160/317 (50%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ +++ ++I  L   PG+   DAT G  G++++  +      ++ A D DP  
Sbjct: 51  STPAGMHISIMVREIIDFLQIKPGQTGFDATLGYSGHTKAMLECLKGQGHMYATDVDPIE 110

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + D     +  ++    F  + +   +  G D V+ DLGVSSMQID  DRGFS
Sbjct: 111 SAKTKKRLADAGFGEDILTIRLQNFCTIDEIAKEAGGFDFVLADLGVSSMQIDNPDRGFS 170

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ + Q +  +L  +L    +E  A  +A AI  +R+   P
Sbjct: 171 FKVDGPLDLRLNPEKGISAAERLAQIDEDELAGMLWENSDEPYAEELARAIVTERKHGKP 230

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++T+ F      K+       R+FQALRI VNNE E L + +     AL
Sbjct: 231 IDTTTRLREVIEETLSFLPEKEKKDTVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGAL 290

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG   +++FHS ED+LVKK       + +                 I   VV P+ E+
Sbjct: 291 KPGGRAAILTFHSGEDKLVKKALKQGYKEGVYSE--------------IANDVVRPSAEE 336

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 337 CAQNGRARSTKMRWAVR 353


>gi|291534831|emb|CBL07943.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis M50/1]
          Length = 350

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  L   PG+   DAT G GG++++         ++ A D DP  
Sbjct: 47  NTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ ++    ++L  +L    +E     +A AI  + R+   
Sbjct: 167 FKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGNR 226

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+KT+ F      K+       R+FQALRI VN E E L + +     AL
Sbjct: 227 IDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDAL 286

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS ED+LVKK         +   +              +K VV P+ ++
Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKEGYRAGIYADY--------------SKDVVRPSAQE 332

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 333 CAQNGRARSTKMRWAVR 349


>gi|166033390|ref|ZP_02236219.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC
           27755]
 gi|166027747|gb|EDR46504.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC
           27755]
          Length = 358

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 28/316 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
               G H+ + +++++  L+  PG+  LDAT G GG++R   +      ++  LD DP  
Sbjct: 56  STPAGMHISICVQEILDFLDIKPGQHGLDATLGYGGHTRKMLEKLEGHGHIYGLDVDPIE 115

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
               ++ +RD     +  ++    F+ +     +    D V+ DLGVSSMQID  +RGF+
Sbjct: 116 SEKTKKRLRDLGYGEDILTVKLCNFADIDKVAEEHGKFDFVLADLGVSSMQIDNPERGFT 175

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           ++  GPLD+RM+   G SA+  +   + +++  +L    +E  A+ I   ++  R+    
Sbjct: 176 YKFDGPLDLRMNPQKGESAAQRLKSMDAEEIEGMLVENSDEPYAAEITEVLMNWRKHGKS 235

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT +L   I++ + F      K        R+FQALRI VN E E L   L    + +
Sbjct: 236 PETTTELKEAIEEALTFLPEKEKKEAVKKSCQRTFQALRIDVNQEFEVLYAFLDKLPQVM 295

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + +++FHS EDRLVK+ F       +                 I K V+ P+ ++
Sbjct: 296 NPGGRIAILTFHSGEDRLVKRAFKEGKKAGIYSE--------------ICKDVIRPSAQE 341

Query: 300 VAFNRRSRSAKLRAGM 315
            A N R++  K+R  +
Sbjct: 342 CARNPRAKCTKMRWAI 357


>gi|238922879|ref|YP_002936392.1| methyltransferase [Eubacterium rectale ATCC 33656]
 gi|263433286|sp|C4ZBW8|RSMH1_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|238874551|gb|ACR74258.1| methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 349

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++ A D DP  
Sbjct: 45  NTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIE 104

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
               ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID  +RGFS
Sbjct: 105 SEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFS 164

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++ + GISA++ ++  + ++L+ +L    +E     +A AI  + R+   
Sbjct: 165 FKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNR 224

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++T+ F      K+       R+FQALRI VN+E E L + +     AL
Sbjct: 225 IGTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG   +++FHS ED+LVKK   +     +   +              +K V+ P+ ++
Sbjct: 285 KPGGRAAILTFHSGEDKLVKKALKAGYKAGIYSDY--------------SKDVIRPSAQE 330

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 331 CAQNGRARSTKMRWAVR 347


>gi|256372032|ref|YP_003109856.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008616|gb|ACU54183.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 319

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 170/312 (54%), Gaps = 12/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PV++ +V+  + P  G+ +LD T G GG++ +    G+  VI LDRDP A+      +
Sbjct: 6   HLPVMVAEVVRAVEPQ-GRRVLDVTVGLGGHAAALLDAGAALVIGLDRDPEALHLAARRL 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             + ++F   + TF  L   V  + +D V+ DLGVSS+Q+D   RGFSF+ +GPLDMRM 
Sbjct: 65  EAFGDRFEPVRGTFRDLARVVGARRIDAVIADLGVSSLQLDHAQRGFSFRLAGPLDMRMD 124

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
                SA+ ++   +   LT +L   GE    +R          + P  T Q    +++ 
Sbjct: 125 PEAPTSAASLLASLDEDGLTELLRR-GEVGPLAR--RYARAILAAMPTTTEQLAEVVVEA 181

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           T    +  R HPAT  FQALR+ VN+E+ +L   L +A +AL+ GG+L V+++HSLEDRL
Sbjct: 182 TPPSRRTTRRHPATLVFQALRLAVNDELGQLTALLPAAFEALEVGGVLAVLTYHSLEDRL 241

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+FF              P+ +  +V +   ++ VVP+ ++VA N R+RSA+LR   + 
Sbjct: 242 VKRFFEVAERGG--APRTTPAGSWTSVLERRPRRGVVPSDDEVARNPRARSARLRVARKL 299

Query: 318 V----ERSIEDD 325
                  + E +
Sbjct: 300 AVADLAPAWERE 311


>gi|291523548|emb|CBK81841.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7]
          Length = 352

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 154/314 (49%), Gaps = 28/314 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           G H+ +++++++  L   PG+  LDAT G GG++ +  +      ++ ALD D   ++  
Sbjct: 53  GMHISIMVQEILDFLQIQPGQRGLDATLGYGGHTSAMLRCLNGEGHLTALDVDAIEMAKT 112

Query: 75  QETMRDY---KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +R+     +  ++ +  F+ + +    D   D ++ DLGVSSMQID  DRGFS++  
Sbjct: 113 EERLRNQGFGPDILTVRKINFANIDEVAEKDGKFDFILADLGVSSMQIDNPDRGFSYKYD 172

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQTT 188
           GPLD+R+    G  AS+ +      +   +L    +E  A+ IA   + + ++  P  TT
Sbjct: 173 GPLDLRLDQTKGEPASERLKHVTRDEFEGMLIENSDEPYAAEIASVVMQELKKGHPVDTT 232

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  LI+K +        K        R+FQALRI VN+E E L   L+     L  GG
Sbjct: 233 SKLRELIEKALVRVPAADRKEAVKKSCARTFQALRIDVNSEFEVLEAFLQKLPDVLNPGG 292

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++FHS EDRLVKK F       +                   K V+ P+ E+   N
Sbjct: 293 RVAVLTFHSGEDRLVKKSFKENVKAGIYSEAA--------------KDVIRPSAEECRCN 338

Query: 304 RRSRSAKLRAGMRT 317
            R+ S KLR  +R+
Sbjct: 339 SRAHSTKLRWAVRS 352


>gi|258654059|ref|YP_003203215.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM
           44233]
 gi|258557284|gb|ACV80226.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM
           44233]
          Length = 348

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 167/309 (54%), Gaps = 19/309 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPA-----PGK----VILDATFGAGGYSRSFCKMGSNV--IA 63
                H+PVL+++V  LL PA            V++DAT G GG++ +  +    +  + 
Sbjct: 22  PDDRRHIPVLVDRVDQLLAPAIEAATADGATDVVLVDATLGMGGHTLALLQAHPRLRVVG 81

Query: 64  LDRDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQ 117
           +DRDP A+S  ++ +      ++  L  A + ++ + +        V  V+FDLGVSS+Q
Sbjct: 82  IDRDPQALSIAEQRITAAGLADRVELVHAVYDRIGEVIAATVASGRVQAVLFDLGVSSVQ 141

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  DRGF++ +  PLDMRM  + GI+A++V+N     ++TRIL   GEE+ A RIA A+
Sbjct: 142 LDEADRGFAYAQDAPLDMRMDPTSGITAAEVINTYPGAEITRILREYGEERFAQRIARAV 201

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V  R   PF T+  L  L++  +   ++    +PA R+FQALRI VN+E+  L + + SA
Sbjct: 202 VTERAKRPFTTSARLVELVRANIPAAARRTGGNPAKRTFQALRIEVNDELGALQRAIPSA 261

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L   G ++V+S+ SLEDR+VK+  A  +     +        H   F+ + +    P
Sbjct: 262 LQHLSVAGRIVVMSYQSLEDRIVKRAIAPLTLSRTPLDLPTELPGHDPEFRWVVRGSQAP 321

Query: 296 TQEDVAFNR 304
           T E++  N 
Sbjct: 322 TDEEIQANP 330


>gi|153813493|ref|ZP_01966161.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174]
 gi|149830437|gb|EDM85529.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174]
          Length = 352

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++ +++  L   PG+   DAT G GG++++  +      ++ A D DP  
Sbjct: 47  NTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ +++ +  +L  +L    +E     IA AI  + R+   
Sbjct: 167 FRADGPLDLRLNQEKGISAAERLDKISRDELAGMLYENSDEPYCEEIAKAITDEIRKGNR 226

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHP-----ATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++T+ F               R FQALRI VN E E L + +     AL
Sbjct: 227 VDTTTKLREIIEETLDFLPEKEKKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDAL 286

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS ED+LVKK   +     +   +               K V+ P+ ++
Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKAGYKAGIYSDYA--------------KDVIRPSAQE 332

Query: 300 VAFNRRSRSAKLRAGMRTV 318
            A N R+RS K+R  +++ 
Sbjct: 333 CAQNGRARSTKMRWAVKSE 351


>gi|283797253|ref|ZP_06346406.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|291075103|gb|EFE12467.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|295092386|emb|CBK78493.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum
           K10]
          Length = 383

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+V LDAT G GG++R   K      ++  LD DP      
Sbjct: 84  GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143

Query: 75  QETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D     +  ++    F+ +     +    D ++ DLGVSSMQID  +RGF+++  
Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTT 188
           GPLD+RM    G +A++ +   + ++   +L    +E  A  I+H +  R +      TT
Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLKRGGRIDTT 263

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   +++ + F      K        R+FQALRI VN+E E L   L     ALK+GG
Sbjct: 264 TQLREAVEEALSFLPEKERKEAVKKSCARTFQALRIDVNSEFEVLYAFLEKLPSALKSGG 323

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS EDRLVKK F       +                 I ++V+ P+ E+ A N
Sbjct: 324 KAAILTFHSGEDRLVKKSFREYKRAGLYSE--------------IAQEVIRPSAEECARN 369

Query: 304 RRSRSAKLRAGMR 316
            R++S K+R  ++
Sbjct: 370 SRAKSTKMRWAVK 382


>gi|193216628|ref|YP_001999870.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1]
 gi|263456519|sp|B3PMB4|RSMH_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193001951|gb|ACF07166.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1]
          Length = 286

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 151/291 (51%), Gaps = 14/291 (4%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +        +D T G  G+S    K      +I  D+D  A+    + ++     F+L Q
Sbjct: 1   MEIKSDGTYVDLTLGRAGHSLEILKKLINGRLICFDKDNEAIKESYKKLQKISPNFTLIQ 60

Query: 90  ATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISAS 145
             F  L+   + +    VDG++ DLGVSS QID   RGFS+ + GPLDMRM+     SA 
Sbjct: 61  NDFRFLKAELEKLGINEVDGILADLGVSSPQIDDPTRGFSYSQEGPLDMRMNQQNSFSAK 120

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205
           D+++  +  +LT+IL    + K A+ +A AIV +R   P ++T +L  +I+  +      
Sbjct: 121 DIIDNFDESELTKILIKNADVKLANLVAKAIVAKR---PIKSTSELVEIIKNALPAKIVR 177

Query: 206 RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR 265
             +PA   FQALRI VN+E+  L   L  A + LK  G +++++FHS ED +VK FF  +
Sbjct: 178 EKNPAKAVFQALRIEVNDELGALTAMLADATQLLKKDGKILIITFHSKEDSIVKNFFQKQ 237

Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +     +  +  +       +   +K++ P++++   N RSRSAKLR   +
Sbjct: 238 NYVDPRLNKLPINIQ-----KIWKQKIIFPSEDEKLQNNRSRSAKLRVVKK 283


>gi|111221622|ref|YP_712416.1| S-adenosyl-methyltransferase MraW [Frankia alni ACN14a]
 gi|123143317|sp|Q0RNP9|RSMH_FRAAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|111149154|emb|CAJ60837.1| S-adenosyl-dependent methyl transferase [Frankia alni ACN14a]
          Length = 325

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 168/326 (51%), Gaps = 33/326 (10%)

Query: 19  DHVPVLLEKVIALLNP---APGKVILDAT-------------FGAGGYSRSFCKMGSNVI 62
            H PVL ++V+ LL P    PG V++DAT             F               V+
Sbjct: 1   MHTPVLTDRVLELLAPALSRPGAVVVDATVGLGGHAAALLAAF-----------PEVRVV 49

Query: 63  ALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118
            LDRD  A++   E +R    E+  L  A + ++   +       V GV+FDLGVSS+Q+
Sbjct: 50  GLDRDLDALAHSGERLRALAPERVRLVHAVYDEIGTVLAGLGSARVQGVLFDLGVSSLQL 109

Query: 119 DCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D   RGF++ +  PLDMRM    G++A++V+N  +   L RIL   GEE+ A RIA ++V
Sbjct: 110 DTDARGFAYSRDAPLDMRMDATRGLTAAEVLNTYDAAALARILRDYGEERFARRIAESVV 169

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R   PF T+  L  L++  +    +    +PA R+FQALRI VN+E++ LA+ L +A 
Sbjct: 170 RARAVEPFTTSARLVDLVRDAIPAPARRTGGNPAKRTFQALRIEVNSELDVLARALPAAF 229

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL  GG L+V+S+HSLEDRLVK+     +  ++     +         + +T+      
Sbjct: 230 DALAVGGRLVVLSYHSLEDRLVKRELRGYAETLVPPDMPVVPAGAEPRLRWLTRGAEPAG 289

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSI 322
           + + A N R+ S +LRA  RT     
Sbjct: 290 EVEKADNPRAASVRLRAAERTAPNPD 315


>gi|325067114|ref|ZP_08125787.1| S-adenosyl-methyltransferase MraW [Actinomyces oris K20]
          Length = 319

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 160/312 (51%), Gaps = 24/312 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCK 56
            +     +G H PVLLE+ + LL PA                V++D T G GG++ +  +
Sbjct: 7   QATAADAVGRHEPVLLERCLDLLAPAIEGAVSSTSTTAPARPVMIDCTLGMGGHTEAALE 66

Query: 57  MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVV 108
             +   V+ +DRDP A++     +  + ++F   QAT+  +     +        VD V+
Sbjct: 67  RFTTLKVVGIDRDPEAIALASARLARFGDRFIAVQATYDAVGRVAREHSVRAEGTVDAVL 126

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
            DLGVSS+Q+D   RGFS+ ++ PLDMRM  S G++A D++  A+  +LTRIL   GEE+
Sbjct: 127 MDLGVSSLQLDEASRGFSYARTAPLDMRMDQSSGMTAQDLLESADAAELTRILRTYGEER 186

Query: 168 QASRIAHAIVKRRQ--SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
            ASRIA AIV+RR+       T      + Q     ++ N  HPA R+FQALRI VN E+
Sbjct: 187 FASRIAAAIVRRRESGQPVTSTQDLAELVRQSVPAAARRNGGHPAKRTFQALRIAVNAEL 246

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           + L + +  A  +L+ GG L+V S+ SLEDR+VK+  A  +         +   A     
Sbjct: 247 DVLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEADLPYL 306

Query: 286 QSITKKVVVPTQ 297
           + IT        
Sbjct: 307 ELITNGAEKADA 318


>gi|225388291|ref|ZP_03758015.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme
           DSM 15981]
 gi|225045638|gb|EEG55884.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme
           DSM 15981]
          Length = 350

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 153/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + +++++  L   PG+  LDAT G GG++    K      ++ ALD DP  
Sbjct: 46  STPAGMHISICVKEILDFLQIQPGQNGLDATLGYGGHTLEMLKCLEGKGHIHALDVDPIE 105

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
               +  + D     E  ++    F+++     +    D V+ DLGVSSMQID  +RGF+
Sbjct: 106 SEKTKARLADLGYGPEILTVRLQNFAEIDQVAAEAGRFDFVLADLGVSSMQIDNPERGFT 165

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           F+  GPLD+RM+   GISA+  + +  +++LT +L    +E  A  IA  +  R +    
Sbjct: 166 FKAEGPLDLRMNPERGISAAQRLKEITLEELTGMLTENADEPYAEEIAREVTGRLKRGEE 225

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I   + F      K      + R+FQALRI VNNE E L   L    + L
Sbjct: 226 IATTTKLYQVIGDALAFLPEKDRKEAVKKSSQRTFQALRIDVNNEYEALYAFLEKLPEVL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG   +++FHS EDRLVKK F     +       I               V+ P+QE+
Sbjct: 286 APGGRAAILTFHSGEDRLVKKSFKQYKKEGRYSD--ICEE------------VIRPSQEE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  +R
Sbjct: 332 CARNSRARSTKMRWAVR 348


>gi|295109383|emb|CBL23336.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162]
          Length = 350

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 159/317 (50%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  L   PG+   DAT G GG++++  +      ++ A D DP  
Sbjct: 47  NTPAGMHISIMVKEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEE 106

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 107 SAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA++ ++     +L  +L    +E     IA AI  + R+   
Sbjct: 167 FRADGPLDLRLNQEKGISAAERLDTIGRDELAGMLYENSDEPYCEEIAKAITDEIRRGNR 226

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+KT+ F      K+       R FQALRI VN E E L + +     AL
Sbjct: 227 VDTTTKLREIIEKTLSFIPEKERKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDAL 286

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS ED+LVKK   +     +   +               K V+ P+ ++
Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKAGYKAGIYSDYA--------------KDVIRPSAQE 332

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  ++
Sbjct: 333 CAQNGRARSTKMRWAVK 349


>gi|241998832|ref|XP_002434059.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
 gi|215495818|gb|EEC05459.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
          Length = 368

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 151/349 (43%), Gaps = 37/349 (10%)

Query: 5   SCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-- 59
             K MSSA+         H PV+L +VI  LN   G+ ++D TFGAGG+S++        
Sbjct: 18  KAKQMSSAVSQLETERFTHTPVMLTEVIDALNVQDGQTLIDFTFGAGGHSKALLSAAKDV 77

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVS 114
            V  +DRDP A         +Y  +     + FS++++ +         VDG + D G S
Sbjct: 78  KVFGVDRDPTAYRAACSIATEYPGRLFPVLSRFSEVEETLEQLGVQPNSVDGAILDCGCS 137

Query: 115 SMQID-------CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGE-- 165
           SMQ D        G   F       LD     S      ++ +++V    +I        
Sbjct: 138 SMQFDDPSRGSIHGIMKFPLNLCVKLDCLRHPSSYVIGTLLYKSSVDIKKQIQKYFSNAS 197

Query: 166 --EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN---NRIHPATRSFQALRIF 220
             E     +  +++   ++   Q+      L   ++   ++      H AT++F ALRIF
Sbjct: 198 TAETLCGNVFESLIVLSRNERHQSWVGAGQLYIGSLGERRDMLGRPTHLATKTFMALRIF 257

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           VN+E+ EL   L    + L+ GG L V+SFHSLEDRLVK+ F            +     
Sbjct: 258 VNDELNELNHALTVGRRLLRPGGRLAVLSFHSLEDRLVKRHFQGIDLDEPVSGSIAQKYR 317

Query: 281 HPAVF-----QSITKK----VV----VPTQEDVAFNRRSRSAKLRAGMR 316
           + A +       + ++     +    +P+ ++V  N RSRSAKLR   +
Sbjct: 318 NAATWHGREEMEVARRRVWEPIGTLGLPSAQEVERNPRSRSAKLRVAAK 366


>gi|223935232|ref|ZP_03627150.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
 gi|223896116|gb|EEF62559.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
          Length = 353

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 29/314 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H  + + +++ +L P PG++ +DAT G GG++    +    G  ++ LD DP  +   
Sbjct: 53  GSHRSICVREIMEVLAPKPGEIAVDATLGYGGHALEILRAIQPGGRLVGLDVDPMEMPKT 112

Query: 75  QETMRDYK---EQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +R      E   + ++ F+ L          G D ++ DLG+SSMQID   RGF+F+
Sbjct: 113 ETRLRSVGAPAESLIIRRSNFAGLPQVLAGEGIPGADIILADLGLSSMQIDNPARGFTFK 172

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLD+R++   G  AS ++      +L RIL    +E  A  +A  I++ +   P  T
Sbjct: 173 FEGPLDLRLNPERGRPASALLATLKEPELIRILQDNADEPDAGLLAKGILQAQLRYPITT 232

Query: 188 TQDLSSLIQKTVYFSKNNRIHP-----ATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L+ +I++    +  N+          R FQALRI VN+E   L   LR+      +G
Sbjct: 233 TTGLAEVIREAFRSAHRNKTKDEANTSIRRVFQALRIAVNDEFGALDMFLRNLPGCSNSG 292

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS EDR VKK F       +                     ++ P++E+   
Sbjct: 293 GRVAILTFHSGEDRRVKKAFQDGKRAGVYSSIAEE--------------IIRPSREETRS 338

Query: 303 NRRSRSAKLRAGMR 316
           N R+ SAKLR  +R
Sbjct: 339 NPRASSAKLRWAIR 352


>gi|289810554|ref|ZP_06541183.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 231

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/233 (38%), Positives = 134/233 (57%), Gaps = 12/233 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q  +   +  +
Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQATKKLAQRTR 231


>gi|167756448|ref|ZP_02428575.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402]
 gi|167703856|gb|EDS18435.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402]
          Length = 362

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+ +++++++  L+   G++ LD T G GG++    +      ++ ALD DP  
Sbjct: 59  STPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHMYALDIDPIE 118

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
               +E +       +  ++    F  +     + G  D V+ DLGVSSMQID  +RGFS
Sbjct: 119 SIKTKERLLGKGYGEDVLTIKNCNFKDIDIISKEVGLFDFVLADLGVSSMQIDNPERGFS 178

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184
           ++K GPLD+R++   G+ AS  + + N   L ++     +E  A  IA  I    +S   
Sbjct: 179 YKKEGPLDLRLNPQKGVPASIKLQELNRDQLEQLFIENSDEPYAKEIARNIDSYLKSGQL 238

Query: 185 FQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I+K+     V   K+     A R FQALRI VN E + L + +      L
Sbjct: 239 ITTTTQLYKIIEKSLSSIPVTERKDIVKKSAARVFQALRIEVNREFDVLIEFMDKLPTIL 298

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS EDR+VKK F       +                 + + V+ P++E+
Sbjct: 299 KPGGRVAILTFHSGEDRIVKKAFKEMKNLGIYSD--------------VARNVIRPSKEE 344

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R++S K+R  ++
Sbjct: 345 CHMNSRAKSTKMRWAIK 361


>gi|225568788|ref|ZP_03777813.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM
           15053]
 gi|225162287|gb|EEG74906.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM
           15053]
          Length = 351

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 162/317 (51%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP-F 69
               G H+ + +++++  L   PG+  LDAT G GG++    +      ++ ALD DP  
Sbjct: 46  STPAGMHISICVKEILEFLQIRPGQRGLDATLGYGGHTSKMLECLKGQGHIYALDVDPIE 105

Query: 70  AVSCGQ--ETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
           +V   +  E +    +  ++    F+++     + G  D V+ DLGVSSMQID  DRGF+
Sbjct: 106 SVRTAKRLEKLGYGPDILTVKLQNFAKIDQVSREAGLFDFVLADLGVSSMQIDNPDRGFT 165

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184
           ++  GPLD+RM+   GISA++ +     ++L  +L    +E   + IA A+ ++ R+   
Sbjct: 166 YKAEGPLDLRMNPQKGISAAERLRDITKEELEGMLRENSDEPYGAEIAEAVTEKIRKGGE 225

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT  L   I++ + F      K      + R+FQALRI VN+E E L   L      L
Sbjct: 226 IETTTQLYKTIEEALAFLPEKDRKEAVKKSSQRTFQALRIDVNSEFEALYSFLEKLPDVL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + +++FHS EDRLVKK F   +   +                 I+K+V+ P+QE+
Sbjct: 286 APGGRVAILTFHSGEDRLVKKSFKQFAKSGVYSE--------------ISKEVIRPSQEE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  +R
Sbjct: 332 CRQNGRARSTKMRWAVR 348


>gi|331091351|ref|ZP_08340191.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404512|gb|EGG84056.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 349

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+ + +++++  L   PG+  LDAT G GG++    K      ++ ALD D   
Sbjct: 46  STPVGMHISICVKEILDFLQIQPGQRGLDATLGYGGHTLEMLKCLKGEGHLYALDVDTVE 105

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
            +  +E ++      E  ++    F  +     +    D V+ DLGVSSMQID  +RGF+
Sbjct: 106 SAKTKERLQKLGYGEEILTIKNINFRDIDKVCEEAGKFDFVLADLGVSSMQIDNPERGFT 165

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           ++K GPLD+R++   G+SA++ + +  +++L  +     +E  A  IA  I  + +    
Sbjct: 166 YKKEGPLDLRLNQKKGVSAAERLKEVTMEELEGMFVENADEPYAHEIAEKIFAKLRRGEA 225

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I++ + F               R+FQALRI VN+E E L + +      L
Sbjct: 226 IDTTTKLQQIIEEALKFIPEKERKEAVKKSCQRTFQALRIDVNSEFEVLYEFMEKLPNVL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS EDR+VK+ F       +                 I   V+ P+ E+
Sbjct: 286 KEGGRVAILTFHSGEDRIVKRAFKELKRAGVYSD--------------IANDVIRPSAEE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
             +N R++S K+R  ++
Sbjct: 332 CNYNSRAKSTKMRWAIK 348


>gi|325263876|ref|ZP_08130609.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
 gi|324030914|gb|EGB92196.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
          Length = 357

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + +++++  L   PG+  LDAT G GG++    K      ++ ALD DP  
Sbjct: 54  STPAGMHISICVQEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLENQGHIYALDVDPIE 113

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
               +E + +     E  ++    F+ +     +    D ++ DLGVSSMQID  +RGFS
Sbjct: 114 SQKTKERLSNLGYGPEILTVRLLNFANIDQIAAEAGPFDFILADLGVSSMQIDNPERGFS 173

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAP 184
           ++  GPLD+RM+   GISA++ +     ++L  +L    +E  A  IA A+V + ++   
Sbjct: 174 YKTEGPLDLRMNPEAGISAAERLGTITSEELQGMLVENADEPYAEEIADAVVLETKKGKK 233

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT+ L  +I+  + F      K        R+FQALRI +NNE E L   L      L
Sbjct: 234 IETTRQLREVIESALSFLPAAERKEAVKKSCQRTFQALRIDINNEFEVLYAFLDKLPDVL 293

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG   +++FHS EDRLVKK F     + +   +              +K V+ P+ E+
Sbjct: 294 APGGRAAILTFHSGEDRLVKKSFKRLYNEGIYSDY--------------SKDVIRPSAEE 339

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 340 CIRNSRARSTKMRWAVK 356


>gi|225028745|ref|ZP_03717937.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353]
 gi|224953936|gb|EEG35145.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353]
          Length = 352

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/318 (29%), Positives = 158/318 (49%), Gaps = 29/318 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + +++++  L   PG+  LD T G GG++R   +      ++  LD DP  
Sbjct: 49  STPAGMHISICVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLECLQGEGHIYGLDVDPIE 108

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
           +    + +R      +  ++ Q  F  +     + G  D V+ DLGVSSMQID  +RGFS
Sbjct: 109 IVKTTDRLRKAGYGEDILTIIQQNFRNIDLVAEEHGLFDFVLADLGVSSMQIDNPERGFS 168

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           ++  GPLD+R++   GISA++ + +    ++  +L    +E  A +IA  I+K  +    
Sbjct: 169 YKVEGPLDLRLNPDKGISAAERLRELTRDEIEGMLRENADEPYAEQIAKEIMKTFRQGEQ 228

Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             TT  L  +I++ + F  +++           R+FQALRI VN+E E L + L      
Sbjct: 229 IDTTGQLKEVIERALVFLPDDKEKKDTIKKTCQRTFQALRIDVNSEFEVLEEFLEKLPHI 288

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG + +++FHS EDRLVKK +                     ++  + K V+ P++E
Sbjct: 289 LAPGGRVAILTFHSGEDRLVKKIWKR--------------QQKEGLWSEVAKNVIRPSKE 334

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RS K+R  ++
Sbjct: 335 ECHRNGRARSTKMRWAIK 352


>gi|116072034|ref|ZP_01469302.1| methyltransferase [Synechococcus sp. BL107]
 gi|116065657|gb|EAU71415.1| methyltransferase [Synechococcus sp. BL107]
          Length = 285

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 28/303 (9%)

Query: 24  LLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79
           + + V+A     P    V++DAT G GG+S    +     ++I LD+DP A +   E + 
Sbjct: 1   MADAVVAGAEHLPHQNGVLIDATLGGGGHSALLLERFPGFHLIGLDQDPTARAAAAERLA 60

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            + ++  +    F+    Y P   V  V+ DLGVSS Q+D  +RGFSF+  GPLDMRM+ 
Sbjct: 61  AFGDRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDMRMNP 117

Query: 140 SGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TTQDLSSLI 195
                +A++++++     L  ++   GEE+ + RIA  I     +      T     ++ 
Sbjct: 118 GSDAETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALAYAVA 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 ++  RIHPATR+FQALRI VN+E+  L + L  A   L+ GG++ V+SFHSLED
Sbjct: 178 GCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLDQAPDWLEPGGVMGVISFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK  F                       + IT+K  V T+++   N RSRSAK R   
Sbjct: 238 RRVKTAF-----------------LQDERLERITRKPTVATEDEQDSNPRSRSAKWRLAR 280

Query: 316 RTV 318
           R  
Sbjct: 281 RVN 283


>gi|119588675|gb|EAW68269.1| methyltransferase 5 domain containing 1, isoform CRA_d [Homo
           sapiens]
          Length = 345

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 104/328 (31%), Positives = 158/328 (48%), Gaps = 77/328 (23%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +K GPLDMRM  +   ++    +  ++                                 
Sbjct: 187 RKDGPLDMRMDGAFPPSAIYTRKDLLQ--------------------------------- 213

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
                               H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ 
Sbjct: 214 -----------------RSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVA 256

Query: 248 VSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH------PAVFQSI 288
           +SFHSLEDR+VK+F                +  K   +     +         P +++ I
Sbjct: 257 LSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELI 316

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 317 HKKVLSPQDQDVQDNPRGRSAKLRAAIK 344


>gi|47230508|emb|CAF99701.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 437

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 114/388 (29%), Positives = 170/388 (43%), Gaps = 83/388 (21%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGK----------VILDATFGAGGYSRSFCKMGS-- 59
           ++      H PV+L++V+  L+  PG+          V+LD TFG GG++++   M    
Sbjct: 49  SVSAENPPHTPVMLKEVLHYLDIQPGQGEGSRLSIFHVVLDMTFGGGGHTKAILSMVPEV 108

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVS 114
            V+ALDRDP A+S  ++  ++   Q +     FSQL   + D       VD V+ D G S
Sbjct: 109 KVLALDRDPTAISLAEKLAKESSGQVTPLLGRFSQLDVLLSDLKVKPGSVDAVLLDAGCS 168

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGISASD-------------------VVNQANVK- 154
           SMQ+D  +RGFS  K GPLDMRM      +                      V +     
Sbjct: 169 SMQMDQAERGFSLSKDGPLDMRMDGESRISELSAFATVSKDMTSSSLIGLCFVRRYPEMP 228

Query: 155 --------------DLTRILGILGEEKQASRIAHA-----------------------IV 177
                          +       GE  + +R +H                        + 
Sbjct: 229 SAADVVNTPGSTGSCIHHHGLRGGEMGRENRFSHCGGTSHQPHHPDAAAGQRGGSGQTVK 288

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R     +  + L + +            H AT++FQAL IFVN+E++EL  GLR+A +
Sbjct: 289 RLRPQQSARRFRSLPAAVAYARKDRLRRPAHAATKTFQALCIFVNDELKELHAGLRAARE 348

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---------SNAHPAVFQSI 288
           AL+ GG L V++FHSLEDRLVK+F           +   P         + A  A +  +
Sbjct: 349 ALRPGGRLCVITFHSLEDRLVKRFLRGHDLAHSDQQLFRPGKRDLPKETNTAESAHWLLL 408

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +KV+ P ++DV  N R RSAKLRA +R
Sbjct: 409 RRKVIAPERDDVRDNPRGRSAKLRAALR 436


>gi|153855593|ref|ZP_01996709.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814]
 gi|149752014|gb|EDM61945.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814]
          Length = 354

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 100/316 (31%), Positives = 158/316 (50%), Gaps = 28/316 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           G H+ + + +++   +  PG+  LDAT G GG++    +      ++  LD DP   +  
Sbjct: 53  GMHISICVNEILDFFDIQPGQQGLDATLGYGGHTSKMLEKLQGEGHIYGLDVDPIESAKT 112

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +        ++    F+ +     +    D V+ DLGVSSMQID  DRGF+F+  
Sbjct: 113 KKRLEEKGFGPNILTVKLENFANIDKVAEEAGKFDFVLADLGVSSMQIDNPDRGFTFKAE 172

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+RM+   GISA++ +   + ++LT +L    +E  A  IA AI ++ R+    +TT
Sbjct: 173 GPLDLRMNPEKGISAAERLRDISKEELTGMLIENSDEPYAEEIAEAITEKIRKGGKIETT 232

Query: 189 QDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I++T+ F        A      R FQALRI VNNE E L   L      LK GG
Sbjct: 233 TGLHQVIEETLAFIPEKERKEAVRKSSQRVFQALRIDVNNEFEVLYDFLDKLPGVLKPGG 292

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVKK F     + +                 I K V+ P++E+   N
Sbjct: 293 KVAILTFHSGEDRLVKKSFKQWKKEGLYSE--------------IAKDVIRPSKEECFRN 338

Query: 304 RRSRSAKLRAGMRTVE 319
            R++  K+R  +R  E
Sbjct: 339 SRAKCTKMRWAIRAEE 354


>gi|309807753|ref|ZP_07701687.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           01V1-a]
 gi|308169013|gb|EFO71097.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           01V1-a]
          Length = 288

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 138/249 (55%), Gaps = 13/249 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE- 76
           H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++ 
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 77  ----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  + K + SL    F  LQ          G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  +    A  +VN  + K+L+ IL   G+EK A +IA  IV RR   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVARRAIKPITT 186

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246

Query: 247 VVSFHSLED 255
           V++F SLED
Sbjct: 247 VITFQSLED 255


>gi|319936250|ref|ZP_08010669.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1]
 gi|319808682|gb|EFW05224.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1]
          Length = 346

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+ +++ +++  L+   G++ LD T G GG++    +      ++ ALD DP  
Sbjct: 43  STPVGMHLSIMVNEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNHTGHMYALDIDPIE 102

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
               +E + +     E  ++ Q  F  +     + G  D V+ DLGVSSMQID  +RGFS
Sbjct: 103 SVKTKERLFNKGYGEELLTIKQCNFKDIDYVSKEVGLFDFVLADLGVSSMQIDNPERGFS 162

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184
           ++K GPLD+R++   GI AS  + + N   L ++     +E  A  IA  I    ++   
Sbjct: 163 YKKEGPLDLRLNPEKGIPASQKLQELNKTQLEQLFIDNSDEPYAKEIAKNIDSFLKTGRL 222

Query: 185 FQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT DL  +I+K+     V   K +    A R FQALRI VNNE + L + +      L
Sbjct: 223 IETTTDLYKIIEKSLSFIPVNERKESIKKSAARVFQALRIEVNNEFDVLIEFMEKLPNIL 282

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K+GG + +++FHS EDR+VKK F       +                   + V+ P++E+
Sbjct: 283 KSGGRVAILTFHSGEDRIVKKAFKEMKNLGIYSDAA--------------RNVIRPSKEE 328

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R++S K+R  ++
Sbjct: 329 CHMNSRAKSTKMRWAIK 345


>gi|326792370|ref|YP_004310191.1| ribosomal RNA small subunit methyltransferase H [Clostridium
           lentocellum DSM 5427]
 gi|326543134|gb|ADZ84993.1| Ribosomal RNA small subunit methyltransferase H [Clostridium
           lentocellum DSM 5427]
          Length = 349

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFA 70
               G H+ + +++++  L   PG+  LDAT G GG++    K      ++ ALD DP  
Sbjct: 46  STPAGMHISICVKEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLEAKGHMYALDVDPIE 105

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
           +   ++ + D     E  ++ Q  F  +     + G  D ++ DLGVSSMQID  DRGFS
Sbjct: 106 IVKTKKRLEDLGYGEEILTIKQLNFRDIDQVAAENGLFDFMLADLGVSSMQIDNPDRGFS 165

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           F+  GPLD+R+    GISA++ +     K+L  +L    +E  A  I+   I K R+   
Sbjct: 166 FKYEGPLDLRLDPEKGISAAERLKDMTQKELEGMLIENSDEPYAKEISEAIISKIRKKDY 225

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +I + + F   ++          R+FQALRI VN+E E L + L      L
Sbjct: 226 ISTTTKLQQVIGEALEFIPEDKRKEAIKKSCQRTFQALRIDVNSEFEVLEEFLEKLPNVL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + +++FHS EDRLVKK F     + +                     V+ P+ E+
Sbjct: 286 AKGGRVAILTFHSGEDRLVKKSFKRLLREGVYSEIATE--------------VIRPSAEE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 332 CNMNGRARSTKMRWAIK 348


>gi|291561054|emb|CBL39854.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SSC/2]
          Length = 352

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 28/330 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+ + +++++   +  PG+  LDAT G GG++R   +      
Sbjct: 37  GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSS 115
           ++ ALD DP      ++ + D     +  ++    F+ +     +    D ++ DLGVSS
Sbjct: 97  HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA- 173
           MQID  +RGFS++  GPLD+R++   GISA++ +      +   +L    +E  A +IA 
Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228
             +   ++    +TT DL  +I++ + F      K        R+FQALRI VN+E E L
Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L     AL  GG + ++ FHS EDRLVK  F       +                 I
Sbjct: 277 EELLEKLPDALAPGGKVAILIFHSGEDRLVKHAFKYGKKAGIYSD--------------I 322

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            K V+ P++E+ A N R++S K+R  ++  
Sbjct: 323 AKDVIRPSKEECAQNGRAKSTKMRWAIKVK 352


>gi|323485088|ref|ZP_08090441.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum
           WAL-14163]
 gi|323401644|gb|EGA93989.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum
           WAL-14163]
          Length = 348

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+ + +++++  L   PG+  LDAT G GG++++  +      ++  LD D   
Sbjct: 45  STPVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAILECLQGKGHIYGLDVDAVE 104

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
               ++ +       E  ++ +  F+ +     +    D V+ DLGVSSMQID  DRGFS
Sbjct: 105 QEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEAGTFDFVLADLGVSSMQIDNPDRGFS 164

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           ++  GPLD+R+    GISA++ +   + ++L  +L    +E  A+ I+   I  RR+   
Sbjct: 165 YKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTA 224

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  LI++ + F      K        R+FQALRI VN+E E L + L      L
Sbjct: 225 IDTTTKLRRLIEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDIL 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG   +++FHS EDRLVKK F     + +                     V+ PT E+
Sbjct: 285 SPGGRAAILTFHSGEDRLVKKSFKRLKKQGVYSEIADE--------------VIRPTAEE 330

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 331 CNMNSRARSTKMRWAVK 347


>gi|310658142|ref|YP_003935863.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308824920|emb|CBH20958.1| Methyltransferase [Clostridium sticklandii]
          Length = 348

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ + + +++      PG++  DAT G GG++    K       + A D DP  
Sbjct: 45  NTPAGMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCLEHQGCIFATDVDPIE 104

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
               +  +       +   +    FS++     +    D ++ DLGVSSMQID  DRGF+
Sbjct: 105 SQKTKARLESLGYGEDMLKIRNMNFSEIDKISKEAGKFDFILADLGVSSMQIDNPDRGFT 164

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           +++ GPLD+R++   GISA++ + + N  ++  +L    +E  A  I+ AI+KR +    
Sbjct: 165 YKREGPLDLRLNPEKGISAAERLKEMNQYEIEGMLLENSDEPHAEIISKAIIKRFEEGEK 224

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT  L  LI+ T+ F  +            R FQALRI VN E E L   L      L
Sbjct: 225 IETTSQLRDLIEDTLSFIPSKDREQEIKKTCQRVFQALRIDVNQEFEVLYDFLEKLPAVL 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
              G ++++SFHS EDRLVKK F +   + +                 I+  V+ P+ E+
Sbjct: 285 APNGKVLIMSFHSGEDRLVKKSFKNYYREGIYSE--------------ISTDVIRPSAEE 330

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  +R
Sbjct: 331 CNRNPRARSTKIRFAIR 347


>gi|317498357|ref|ZP_07956653.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894362|gb|EFV16548.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 398

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 160/330 (48%), Gaps = 28/330 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+ + +++++   +  PG+  LDAT G GG++R   +      
Sbjct: 83  GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 142

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSS 115
           ++ ALD DP      ++ + D     +  ++    F+ +     +    D ++ DLGVSS
Sbjct: 143 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 202

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA- 173
           MQID  +RGFS++  GPLD+R++   GISA++ +      +   +L    +E  A +IA 
Sbjct: 203 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 262

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228
             +   ++    +TT DL  +I++ + F      K        R+FQALRI VN+E E L
Sbjct: 263 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 322

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L     AL  GG + +++FHS EDRLVK  F       +                 +
Sbjct: 323 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFKYGKKVGIYSD--------------V 368

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            K V+ P++E+ A N R++S K+R  ++  
Sbjct: 369 AKDVIRPSKEECAQNGRAKSTKMRWAIKVK 398


>gi|167768055|ref|ZP_02440108.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1]
 gi|167710384|gb|EDS20963.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1]
          Length = 352

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 92/330 (27%), Positives = 159/330 (48%), Gaps = 28/330 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+ + +++++   +  PG+  LDAT G GG++R   +      
Sbjct: 37  GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSS 115
           ++ ALD DP      ++ + D     +  ++    F+ +     +    D ++ DLGVSS
Sbjct: 97  HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA- 173
           MQID  +RGFS++  GPLD+R++   GISA++ +      +   +L    +E  A +IA 
Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228
             +   ++    +TT DL  +I++ + F      K        R+FQALRI VN+E E L
Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L     AL  GG + +++FHS EDRLVK  F       +                 +
Sbjct: 277 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFKYGKKVGIYSD--------------V 322

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            K V+ P++E+   N R++S K+R  ++  
Sbjct: 323 AKDVIRPSKEECTQNGRAKSTKMRWAIKVK 352


>gi|302849292|ref|XP_002956176.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f.
           nagariensis]
 gi|300258479|gb|EFJ42715.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f.
           nagariensis]
          Length = 305

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 110/318 (34%), Positives = 158/318 (49%), Gaps = 35/318 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +L +V+    P    V LD T GAGG++            ++ +D DP A    +  +R 
Sbjct: 1   MLNEVLDAFQPVTLNVYLDCTLGAGGHAAKIASAHPEMQMLLGIDLDPTAHVVAEPRIRA 60

Query: 81  YKE------QFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                       L +  +  L+        P    +G++ DLG+SSMQID  DRGFSF +
Sbjct: 61  EAAGRSARLDVRLLRGNYRDLKRLLATVSTPSPRPNGILMDLGISSMQIDTADRGFSFMR 120

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  +   SA +V+N  +  +L RI+   GEEK    +A  IV+ R+ AP +TT
Sbjct: 121 DGPLDMRMDPTAALSAEEVLNTWSEAELGRIIRDFGEEKLWKVVARRIVQAREVAPIRTT 180

Query: 189 QDLSSLIQKTVYFSKN------NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           Q L   + +T    K+        IHPATR+FQALRI VN+E+++L + L  A  AL  G
Sbjct: 181 QQLVKAVGQTQLVGKSPRKASAKGIHPATRTFQALRIAVNDELQKLEKTLPDAIDALAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SFHSLEDR+VK  F   +G+       +      A+              +   
Sbjct: 241 GRLAVISFHSLEDRIVKHAFMRAAGRPTPEEENLVYGQDNAL--------------ETEA 286

Query: 303 NRRSRSAKLRAGMRTVER 320
           N R+RSAKLR   +  ++
Sbjct: 287 NARARSAKLRILQKLPDK 304


>gi|323693536|ref|ZP_08107740.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673]
 gi|323502391|gb|EGB18249.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673]
          Length = 348

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 153/317 (48%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
              +G H+ + +++++  L   PG+  LDAT G GG++++  +      ++  LD D   
Sbjct: 45  STPVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAMLECLQGKGHIYGLDVDAVE 104

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
               ++ +       E  ++ +  F+ +     +    D V+ DLGVSSMQID  DRGFS
Sbjct: 105 QEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEVGTFDFVLADLGVSSMQIDNPDRGFS 164

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184
           ++  GPLD+R+    GISA++ +   + ++L  +L    +E  A+ I+   I  RR+   
Sbjct: 165 YKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTA 224

Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  L+++ + F      K        R+FQALRI VN+E E L + L      L
Sbjct: 225 IDTTTKLRRLVEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDIL 284

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG   +++FHS EDRLVKK F     + +                     V+ PT E+
Sbjct: 285 SPGGRAAILTFHSGEDRLVKKSFKRLKKQGVYSEIADE--------------VIRPTAEE 330

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RS K+R  ++
Sbjct: 331 CNMNSRARSTKMRWAVK 347


>gi|71893756|ref|YP_279202.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J]
 gi|72080726|ref|YP_287784.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|88909202|sp|Q4A7X8|RSMH_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909203|sp|Q4A9T0|RSMH_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71851883|gb|AAZ44491.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71913850|gb|AAZ53761.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 296

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 153/300 (51%), Gaps = 16/300 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVPVLLE++I  L   P    +D T G GG+S +  +      ++  D+D  A+   + 
Sbjct: 1   MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK+   +  + FS+   Y+ +   + VDG + DLGVSS QID  +RGFS+ K G L
Sbjct: 61  KLLAYKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNL 120

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L 
Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K +      + +     FQA+RI VNNE++ L + L    K LK G  + +++FHS
Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VKK F     K                F     KV  P   ++  N R++SAKLR
Sbjct: 238 LEDRIVKKAFLDLIRKDKLE----FFQKGLPKFSM---KVFRPKANELKSNPRAKSAKLR 290


>gi|54020186|ref|YP_115916.1| hypothetical protein mhp406 [Mycoplasma hyopneumoniae 232]
 gi|76363868|sp|Q600P9|RSMH_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53987359|gb|AAV27560.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 296

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 104/300 (34%), Positives = 151/300 (50%), Gaps = 16/300 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVPVLLE++I  L   P    +D T G GG+S +  +      ++  D+D  A+   + 
Sbjct: 1   MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +   K+   +  + FS+   Y+ +   + VDG + DLGVSS QID   RGFS+ K G L
Sbjct: 61  KLLALKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPARGFSYSKDGNL 120

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L 
Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K +      + +     FQA+RI VNNE++ L + L    K LK G  + +++FHS
Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VKK F     K                F     KV  P   ++  N R++SAKLR
Sbjct: 238 LEDRIVKKAFLDLIRKDKLE----FFQKGLPKFSM---KVFRPKANELKSNPRAKSAKLR 290


>gi|42559447|sp|Q7U3X9|RSMH_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 296

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 161/312 (51%), Gaps = 28/312 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           +   +  HVPVL E V+      P    +++DAT G GG+S    +   G  +I LD+D 
Sbjct: 1   MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A +   E +  + ++ ++    F+   +Y P +    V+ DLGVSS Q+D  +RGFSF+
Sbjct: 61  TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117

Query: 129 KSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQSAP 184
             GPLDMRM+  G   +A++++++    +L  ++   GEE+ + RIA  I      Q A 
Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T     ++           RIHPATR+FQALRI VN+E+  L + L+ A   L+ GGL
Sbjct: 178 SGTAALAYAVAGCYPPQGTPRRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGL 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + ++SFHSLEDR VK  F                       + IT+K VV T+E+   N 
Sbjct: 238 VGIISFHSLEDRRVKTAF-----------------LRDERLERITRKPVVATEEEEEANP 280

Query: 305 RSRSAKLRAGMR 316
           RSRSAK R   +
Sbjct: 281 RSRSAKWRLARK 292


>gi|171915286|ref|ZP_02930756.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM
           4136]
          Length = 352

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 27/317 (8%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           ++     G H+P++L +++ +L P PG+  LD T G GG++ +  +       ++ LD+D
Sbjct: 51  ASGKTPAGQHIPIMLPEILEVLAPQPGERALDCTLGYGGHAEALLRAVQPDGCLMGLDQD 110

Query: 68  PFAVSCGQETMRDYKEQ---FSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDC 120
              +      ++          + +  F+     L +     G D ++ DLGVSSMQID 
Sbjct: 111 AIEIEKTGARLKALGFPEATLRVVRMNFAGLRKALDEAAWSDGADVILADLGVSSMQIDN 170

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFSF+  GPLDMRM+   G+ A +++ + +V  LT +L    +E  +  +A A+  +
Sbjct: 171 PARGFSFKSDGPLDMRMNPLRGVPARELLRKISVPKLTALLEENADETNSILLAAALAGQ 230

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             +        +   + +  +  +        R FQALRI VN+E   L   LR    AL
Sbjct: 231 DFAKTPTLAAAVKRALPR--HLDEEEVTATTRRVFQALRIAVNDEFGALDSFLRVLPTAL 288

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG + V++FHS EDR VKK F + S                  F +I+ +V  P+ E+
Sbjct: 289 RPGGRVAVLTFHSGEDRRVKKAFLAGSRDGT--------------FSAISDEVQRPSPEE 334

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R+ SAKLR  +R
Sbjct: 335 IRLNTRAASAKLRWAVR 351


>gi|255026327|ref|ZP_05298313.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-003]
          Length = 227

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++    VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSL 224


>gi|87309877|ref|ZP_01092011.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM
           3645]
 gi|87287641|gb|EAQ79541.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM
           3645]
          Length = 262

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 151/281 (53%), Gaps = 27/281 (9%)

Query: 45  FGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
            G GG++R   +   +   VIA DRD  A+   ++++R    + +     F +L   + D
Sbjct: 1   MGGGGHTRQLAERVGDEGLVIACDRDLAAIERAEQSLRGLPIKVTQRN--FCELPSVLQD 58

Query: 102 ---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLT 157
                +DG++ DLG+SS Q+   +RGFSF   GPLD+R     G +A+D+VN  + KDL 
Sbjct: 59  LEIDLIDGLLLDLGLSSDQLADRNRGFSFDSDGPLDLRFDETEGDTAADLVNLLSEKDLA 118

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQA 216
            ++   GEE+ + RIA  +  RR+  PF    DL+ L+           RIHPATR+FQA
Sbjct: 119 DVIYQNGEERLSRRIAKKVCLRRKEKPFLLASDLAELVTSCYPGRGARERIHPATRTFQA 178

Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           LRI VN E+  L   L+SA   ++ GG + V+SFHSLEDR VK+ F              
Sbjct: 179 LRIAVNRELSSLESILKSAPDFIRPGGKIAVISFHSLEDRRVKEAFREDE---------- 228

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                    + +TKK ++P++E++  N RSRSAKLR   R 
Sbjct: 229 -------RLEPMTKKPIIPSEEEIMRNPRSRSAKLRVARRV 262


>gi|327281892|ref|XP_003225679.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Anolis carolinensis]
          Length = 395

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/323 (37%), Positives = 166/323 (51%), Gaps = 38/323 (11%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           L+    + ILD TFGAGG++++  +      + ALDRDP A    Q     Y +Q     
Sbjct: 72  LSNRHMECILDMTFGAGGHTKALLQKEMDIKLYALDRDPTAYELAQRLSDSYTQQIQPLL 131

Query: 90  ATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CS 140
             FSQL+       V    +DGV+ D G SSMQ+D  +RGFS +K GPLDMRM       
Sbjct: 132 GQFSQLEALLTSAGVQPGNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPD 191

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
             +A+DVVN  + + L  IL + GEE+ A +IA AIV+ R   P   TQ L+S++     
Sbjct: 192 MPTAADVVNALDQQALASILRMYGEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFP 251

Query: 201 FSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
                      +   H AT++FQALRIFVNNE+ EL  GL++AEK LK GG  + +SFHS
Sbjct: 252 DVALYARKDLLHRPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPGGRFVALSFHS 311

Query: 253 LEDRLVKKFF-----------ASRSGKVMAVRHMIPSNAHPA--------VFQSITKKVV 293
           LEDR++K+F            + R       R                   + +I KKV+
Sbjct: 312 LEDRIIKRFLLGIDISEKFNLSVRQKIKQMGRDFSELEEEDEFSNGNVNLKWIAIQKKVL 371

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P  +D+  N R RSAKLR  ++
Sbjct: 372 TPQAKDLQDNPRGRSAKLRGAIK 394


>gi|169839498|ref|ZP_02872686.1| S-adenosyl-methyltransferase MraW [candidate division TM7
           single-cell isolate TM7a]
          Length = 339

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 153/306 (50%), Gaps = 25/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL   + L  P P +  LD T G GG++ +F       S+ + +DRD  A++   E
Sbjct: 18  HVPVLLSASLDLFKPQPKERYLDLTAGYGGHAEAFLNKTQSYSSAVLVDRDENAIA---E 74

Query: 77  TMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             R      +L  A F           +  D ++ DLGVSS Q+D GDRGFSF   GPLD
Sbjct: 75  LGRFSALGATLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQLDNGDRGFSFMYDGPLD 134

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM      SA+D+VN    + L  IL   GEE+     A  I          T     +
Sbjct: 135 MRMDQRQKFSAADIVNSYPKQKLIEILVRYGEER--LSFAKRIADEIYKRRPFTKTSELA 192

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +   ++     +IHPATR+FQALRI VN E+ ++   L    + L +GG + ++SFHSL
Sbjct: 193 KMIVEIHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQLLNSGGRVGIISFHSL 252

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-VPTQEDVAFNRRSRSAKLR 312
           EDRLVK+FF   SG            +  +  + + KK +   T +  A+N RSRSAKLR
Sbjct: 253 EDRLVKRFFKDNSGL-----------SFESELELLNKKPLDGATYD--AYNPRSRSAKLR 299

Query: 313 AGMRTV 318
             ++  
Sbjct: 300 GALKNK 305


>gi|322379450|ref|ZP_08053820.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1]
 gi|322380939|ref|ZP_08055005.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5]
 gi|321146611|gb|EFX41445.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5]
 gi|321148159|gb|EFX42689.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1]
          Length = 303

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 146/320 (45%), Gaps = 35/320 (10%)

Query: 4   KSCKTMSSAIHHTIGD--HVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKM 57
              + M   +    G   H  VLLE+V+A+           V++D T G GG++ +  + 
Sbjct: 5   DRTRLM--PMQPIKGKFLHQSVLLEEVVAIFQEVIQSHSEPVLIDCTLGLGGHTLALLQT 62

Query: 58  GS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVS 114
                V+ ++RD  A     E +  +  +FS     F+ +    + +  + GV+ DLGVS
Sbjct: 63  YPNLRVVGIERDKEASEQALEKLTPFAHRFSFKSGNFATILPSLLKENRICGVLADLGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           S+Q+D  DRGFSF              + AS V+N  +   L +IL   GE     ++A+
Sbjct: 123 SLQLDHLDRGFSFNAPTLDMRMDIDQSLDASKVINTYSAYALEKILQA-GEVYAPKKMAN 181

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            IV+ R                     S++++ HPAT  FQA+R+ VN+E+  L Q L  
Sbjct: 182 LIVQNRPF------YSAKDFADFISQHSRHSKHHPATLIFQAIRMEVNSEMHNLDQLLEC 235

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
            +       ++ ++SFHSLEDR VK  F   +                     + KK ++
Sbjct: 236 VQ--SLKEAIVCIISFHSLEDRKVKHAFKEWAQNRGV---------------LLFKKPII 278

Query: 295 PTQEDVAFNRRSRSAKLRAG 314
           P+++ +  NRR+RSAK+RA 
Sbjct: 279 PSKKAIQENRRARSAKMRAF 298


>gi|321310206|ref|YP_004192535.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802050|emb|CBY92696.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str.
           Langford 1]
          Length = 301

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           + ++V++ L  +   + LD TFGAGG+SR         S +I LD D  AV  G++ +  
Sbjct: 1   MSDEVVSYLLGSKDGLYLDCTFGAGGHSRQLLSKISSQSKLIGLDIDSVAVEMGKK-LEQ 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++FS+ +  F++L DY  +  +     ++FDLG S MQ+    RGFS+ +   LDMRM
Sbjct: 60  EDDRFSMVRLNFARLSDYQKENNLPKARGIIFDLGTSMMQLRDPSRGFSYLEDAHLDMRM 119

Query: 138 SCSGISA-SDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLSSLI 195
             +  +  +D++N  +   L  I    G+   + R+ + I   R++ +  +TT +   LI
Sbjct: 120 DQTSKTTAADILNYGSRMQLKDIFRKYGDIHNSDRLINLISDHRKKYSCIETTLEFRDLI 179

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++        R     +R+FQA+RI VN+EI+     + S  + L+ GG+  +++FHS E
Sbjct: 180 EEAHKKLDPVRLRKEISRTFQAIRIAVNDEIKSFEMAMNSLHEVLEVGGVACIITFHSGE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           + ++K + +     +    +   S      F+ ++   +VPT++++A NR SRS+KL   
Sbjct: 240 EDVLKTWKSKYCDHIEIRDY---SKNMVNKFRFVSNGYIVPTEKEIAENRSSRSSKLWVF 296

Query: 315 MRTVE 319
            +  +
Sbjct: 297 QKVRD 301


>gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 434

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 104/351 (29%), Positives = 154/351 (43%), Gaps = 62/351 (17%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGG-------------YSRSFCKMGSNVIAL 64
             HVPV+L +V+ + +    +  +D T GA G             +           + +
Sbjct: 93  SSHVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKHF----------VGM 142

Query: 65  DRDPFAVSCGQETMRDYKEQ----------FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           D DP A   G   +                F   ++  +  Q  + D GVDG++ DLG+S
Sbjct: 143 DVDPVARKLGHFHIDSLMHPTLKASIVLKNFKYIKSVVADTQPELLDVGVDGILMDLGMS 202

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ++   RGFS  + GPLDMRM      +A D+VN     +L R+L   GEE     + 
Sbjct: 203 SMQVNNPQRGFSVLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWHLLQ 262

Query: 174 HAIVKRRQSAPFQTTQDLSSL---IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
             IVK R +    +T +L  L   +       +   I  ATR FQ LRI VN+E++ L  
Sbjct: 263 TRIVKARLNGGLHSTGELVDLIRGMSPAGRGGRQGWIKTATRVFQGLRIAVNDELKTLQN 322

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNA 280
            L S+   L  GG L V+SFHSLEDR+VK+ F           +  G  +     I    
Sbjct: 323 SLYSSFDVLGPGGRLAVISFHSLEDRVVKQTFLNILGFQREEINGEGNSVKPERQIEERV 382

Query: 281 HPAVFQ---------------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              + +                +TK+ + P++E+   NRR+RSAKLR   +
Sbjct: 383 EKELKEKEAWIKQTVIGSKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433


>gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana]
 gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana]
 gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana]
 gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana]
 gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana]
          Length = 434

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 106/341 (31%), Positives = 157/341 (46%), Gaps = 42/341 (12%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74
             HVPV+L +V+ + +    +  +D T GA G+S S  +  S +   + +D DP A   G
Sbjct: 93  SSHVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLG 152

Query: 75  QETMRDYKEQ----------FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
              +                F   ++  +  Q  + D GVDG++ DLG+SSMQ++  +RG
Sbjct: 153 HFHIDSLMHPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERG 212

Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS  + GPLDMRM      +A D+VN     +L R+L   GEE     + + IVK R + 
Sbjct: 213 FSVLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNG 272

Query: 184 PFQTTQDLSSLIQ---KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
              +T +L  LI+         +   I  ATR FQ LRI VN+E++ L   L S+   L 
Sbjct: 273 GLHSTGELVDLIRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLA 332

Query: 241 AGGLLIVVSFHSLEDRLVKKF------FASRSGKVMAVRHMIPSNAH------------- 281
            GG L V+SFHSLEDR+VK+       F                                
Sbjct: 333 PGGRLAVISFHSLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEW 392

Query: 282 ------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  +    +TK+ + P++E+   NRR+RSAKLR   +
Sbjct: 393 IKQTVIASKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433


>gi|5834377|gb|AAD53943.1|AF179611_27 conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 276

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 108/262 (41%), Positives = 156/262 (59%), Gaps = 6/262 (2%)

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +R
Sbjct: 1   DPDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPER 60

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFS Q  GPLDMRM+ +G+SA +++N A  KD+  +L + GEE+Q+ R+A AIV+   +A
Sbjct: 61  GFSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIVR--GTA 118

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +    L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G
Sbjct: 119 FKRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKG 178

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L VV+FHSLEDR+VK F    +G+     RH         VF S   + V   + ++A 
Sbjct: 179 CLAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELAR 238

Query: 303 NRRSRSAKLRAGMRTVERSIED 324
           N R+RSA LRA  RT     ED
Sbjct: 239 NPRARSATLRAVYRTETPFSED 260


>gi|330902009|gb|EGH33332.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 263

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 98/263 (37%), Positives = 153/263 (58%), Gaps = 9/263 (3%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSM 116
           ++  D+DP A++ GQ  +     +F + Q +F++L     ++     V G++ DLGVSS 
Sbjct: 1   LLGFDKDPQAIATGQA-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSP 59

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFSF   GPLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A
Sbjct: 60  QLDDPERGFSFMNDGPLDMRMDPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANA 119

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +V RR+  PF+ T DL+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A
Sbjct: 120 VVARREVQPFERTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAA 178

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVV 293
             AL+ GG L+V+SFHSLEDR+VK F    + G+   +   +P    P   +  I  K  
Sbjct: 179 LDALEVGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQ 238

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             +  +   N RSRSA +R   +
Sbjct: 239 FASDVETKANPRSRSAVMRVAEK 261


>gi|290989161|ref|XP_002677211.1| predicted protein [Naegleria gruberi]
 gi|284090817|gb|EFC44467.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 161/308 (52%), Gaps = 48/308 (15%)

Query: 40  ILDATFGAGGYSRSFCKM--GSNVIALDRD----PFAVSCGQETMRDYK-EQFSLFQATF 92
            +DATFGAGGY+R   +   G  VI +D D    P      +    ++  E+  +    F
Sbjct: 18  FIDATFGAGGYTREILRAYPGCKVIGIDTDYYNNPTIKENEKLIHEEFGKERLEVHCVNF 77

Query: 93  SQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141
            +++  V +             +DG+VFDLGVSSMQ+D G RGFSF +           G
Sbjct: 78  REIKKVVQEKIVPQLKSDTSNVIDGIVFDLGVSSMQLDQGHRGFSFLRE----------G 127

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVY 200
             A DVVN  +  DL  ++   GE+ +A RIA AIV  R +  PF+TT +L++LI+K   
Sbjct: 128 PLARDVVNNMSELDLRIMITKFGEDDKAYRIAKAIVDYRNNVKPFETTLELANLIEKITP 187

Query: 201 FS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA-GGLLIVVSFHSLEDRL 257
           F   K  RIHPAT++FQA+RIFVN+E+  L   L +++  LK   G L+VVS+HSLEDR+
Sbjct: 188 FHERKKKRIHPATKTFQAIRIFVNDELSALQNALYASKDILKIGTGRLVVVSYHSLEDRI 247

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            K F                       F+ ITK  ++P   +V FN RSRSAKLR   R 
Sbjct: 248 TKDFMKENQDS----------------FKKITKGTIIPDDAEVEFNVRSRSAKLRCAQRV 291

Query: 318 VERSIEDD 325
                ++D
Sbjct: 292 ENNRTDED 299


>gi|219128094|ref|XP_002184257.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404488|gb|EEC44435.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 290

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 142/291 (48%), Gaps = 24/291 (8%)

Query: 40  ILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
            +D T G GG+S +  +    G  V   D DP A++   E   +              L 
Sbjct: 2   FIDGTLGGGGHSAALLQRLQPGDVVFGCDVDPAALATASERTGNDATT---------NLV 52

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQAN 152
                 GVDG++ DLGVSS QID  +RGF+F K GPLDMRM      +G++A+D+ N+ +
Sbjct: 53  LPPTCPGVDGILLDLGVSSHQIDTAERGFAFMKDGPLDMRMGQQNLHTGLTAADICNEFD 112

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS--LIQKTVYFSKNNRIHPA 210
             +L RIL   G+E +A  IAH+IV+ R         +  S  + Q      +  R+   
Sbjct: 113 EVELRRILKTYGDEPRAKSIAHSIVQSRPLQTTNDLVEAVSAVVPQFARKGKRLGRMSTL 172

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKAL-KAGGLLIVVSFHSLEDRLVKKFFAS---RS 266
            R FQ+LRI VN E + L Q L      L + GG L+V+S+ S+EDR  K+       R 
Sbjct: 173 ARVFQSLRIVVNQEDKVLEQALVDMAPTLLRPGGRLVVLSYQSMEDRSTKRVMRDGMTRK 232

Query: 267 GKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 + M  +    P  F ++ K+    T+E++A N R+RSA LR   R
Sbjct: 233 KTHSDEKDMYGNYCGAPRPFLALGKR-QKATEEEIAGNPRARSATLRVAER 282


>gi|58696920|ref|ZP_00372421.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536850|gb|EAL60058.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 251

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 104/261 (39%), Positives = 151/261 (57%), Gaps = 17/261 (6%)

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
            V A+DRD        +    Y ++  LF   FS +++ +    +   DG+VFD+GVSSM
Sbjct: 2   QVYAIDRDETVTKFYDDLSVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSM 61

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D GDRGFSF   GPLDM M  S   +AS  VN    +++   +   G E+ + +IA A
Sbjct: 62  QLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARA 121

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           IV  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+++A
Sbjct: 122 IVNARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAA 180

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L   G LIVV+FHSLEDR+VK FF                      F  + KKV+  
Sbjct: 181 SEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVIEA 228

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + E+V+ N RSRSAKLRA  R
Sbjct: 229 SIEEVSANPRSRSAKLRAIQR 249


>gi|258614830|ref|ZP_05712600.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO]
          Length = 234

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 3/217 (1%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162
           VDG+++DLGVSS Q+D  +RGFS+ +  PLDMRM  S  +SA  V+N+ +  +L +I   
Sbjct: 13  VDGILYDLGVSSPQLDEAERGFSYHQDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFR 72

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFV 221
            GEEK + +IA  I + R++ P QTT +L  +I++ +    +    HPA R FQA+RI V
Sbjct: 73  YGEEKFSKQIAREIERVRKTKPIQTTGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAV 132

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNA 280
           N+E+      L  A + LK  G + V++FHSLEDR+VK  F   S  + +     +  + 
Sbjct: 133 NDELGAEEASLEQAIRLLKVNGRISVITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDE 192

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                + IT+K ++P++E++  N RSRSAKLR   + 
Sbjct: 193 FQPELKVITRKPILPSEEELTENNRSRSAKLRIAEKI 229


>gi|260826594|ref|XP_002608250.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae]
 gi|229293601|gb|EEN64260.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae]
          Length = 280

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 20/235 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H PV++ +V+  L+P PG+V +D TFGAGG++++      +  V A+DRDP A +  Q 
Sbjct: 2   PHTPVMVREVLDCLDPQPGQVYVDMTFGAGGHTKAILAAQPDTVVYAIDRDPAAHNMAQN 61

Query: 77  TMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + Y +        FS+L        V +  VDG +FD+G SSMQ D G RGFS  + G
Sbjct: 62  IAKQYGKSIRPVLGRFSELLYLLSSQNVQENTVDGFLFDVGASSMQFDQGGRGFSLSQDG 121

Query: 132 PLDMRMS-----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           PLDMRM          +A+DVVN     DL  I+   GEEK A +I+ AIV  R   P  
Sbjct: 122 PLDMRMDGERFGNKQPTAADVVNSLGEDDLYGIIKTYGEEKHARKISSAIVDARNKIPIT 181

Query: 187 TTQDLSSLIQKTV--------YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           TT+ L+ ++   +        +   N  +HPAT++FQALRIFVN+E+ EL QGL+
Sbjct: 182 TTKQLAGVVASALAPPGVFFAHDKLNRAVHPATKTFQALRIFVNDELNELYQGLQ 236


>gi|302518535|ref|ZP_07270877.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78]
 gi|302427430|gb|EFK99245.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78]
          Length = 293

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 147/249 (59%), Gaps = 10/249 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
             G HVPV+L + + LL PA   PG V++D T G GG+S +         ++ALDRD  A
Sbjct: 27  AEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEA 86

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + E+  L  A + +L D +       V G++FDLGVSSMQ+D  DRGF++
Sbjct: 87  LRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAY 146

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF 
Sbjct: 147 AQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFA 206

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG +
Sbjct: 207 RSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRI 266

Query: 246 IVVSFHSLE 254
            V+++HSLE
Sbjct: 267 AVLAYHSLE 275


>gi|311087661|gb|ADP67740.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 271

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 162/271 (59%), Gaps = 16/271 (5%)

Query: 55  CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFD 110
                 + ++DRDP A S G +       +F +    FS+L D+  ++ +    +G++FD
Sbjct: 4   LGQSGRLYSIDRDPIAFSIGSKIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFD 60

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS+QID   RGFSF+  GPLDMRM    GISAS+ + ++NVK+++ +L   GEE+ +
Sbjct: 61  LGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFS 120

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            +IA+AI +R Q     +T +L+++I+KT+   KN   HPA RSFQA+RI++N E+EE+ 
Sbjct: 121 RKIAYAIKRRSQIKKITSTLELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQ 179

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAV 284
           + L +  K LK GG + ++SFHSLEDRLVKKF    S K +    M  +           
Sbjct: 180 KALENTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCK 239

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
            + I +  ++PTQ ++  N R+RS+ LR   
Sbjct: 240 LKIINR--ILPTQNEINNNPRARSSVLRIAE 268


>gi|307297403|ref|ZP_07577209.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916663|gb|EFN47045.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 299

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 148/293 (50%), Gaps = 25/293 (8%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H  V++ + +   L        +D T G GG+ R+  +     + +I LD D   ++  +
Sbjct: 9   HRSVMIHEALHYLLGGRLTGTYIDCTAGEGGHIRAMLEATEGQAKIIGLDVDSEVLNIAE 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + ++DY+E   LF  ++   +  +     + VDG + D+GVS+ Q+    RGFS++   P
Sbjct: 69  QNLKDYRESVELFNLSYVDFEIALRQAGVEKVDGFLLDVGVSTFQLKAKGRGFSYELDEP 128

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQD 190
           LDMRM+     +A+DVVN     +L+RI+   G+EK+   +IA +IV RR     +   D
Sbjct: 129 LDMRMNLSQKRTAADVVNSYREDELSRIIFEFGDEKRFARKIARSIVSRRPLFTTKDLHD 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
                       K  R H AT++FQA+RI VN E+E +   LR     L  GG ++++SF
Sbjct: 189 AIKAAIPPAERYKRRR-HFATKTFQAVRIEVNQELENIESTLRKIPGFLNQGGRIVIISF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           HSLED + K+ F  +S                +  + +TKK V P++E+V  N
Sbjct: 248 HSLEDGIAKRVFREKS---------------ESELKILTKKPVQPSKEEVELN 285


>gi|296124253|ref|YP_003632031.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
 gi|296016593|gb|ADG69832.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
          Length = 378

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 159/315 (50%), Gaps = 28/315 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H P+++++++ +L P  G+  +D T G GG+++   +       ++ +D DP  +   
Sbjct: 77  GTHRPIMVDEILQVLAPQAGERGIDCTLGFGGHAQQLLRAIQPDGCLLGIDADPIELPKT 136

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +R      E   + +  F+ L   +P       D ++ DLG+SSMQID   RGF+F+
Sbjct: 137 EARLRSAGFPAETLMVQRTNFAALPGLIPAFLPGGADFLMADLGLSSMQIDDPARGFTFK 196

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+   G SA++ + + + + L ++L    +E  A  +A  ++  +Q + F T
Sbjct: 197 VDAPLDMRMNPSRGPSAAEFLAKIDERGLAKLLEDAADEPCAEPLARGLITAQQISAFIT 256

Query: 188 TQDLSSLIQKTVYF----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           T  L+  +++ +       + +      R FQA+RI VN+E   L   L+S  + +K GG
Sbjct: 257 TGQLAEAVRRVLATIGSLDEEDVSSTIRRVFQAIRIAVNDEFSTLDILLKSIPQCVKPGG 316

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDR VKK F +                   V++ I+ +V+  T ++   N
Sbjct: 317 RIAILTFHSGEDRRVKKAFQAGLASG--------------VYREISSEVMRATPQERHDN 362

Query: 304 RRSRSAKLRAGMRTV 318
            RS  AKLR  +R+ 
Sbjct: 363 PRSIPAKLRWAIRSS 377


>gi|218508691|ref|ZP_03506569.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5]
          Length = 227

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 123/227 (54%), Positives = 157/227 (69%), Gaps = 1/227 (0%)

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           MQ+D  +RGFSFQK+GPLDMRMS +G+SA+DVVN+A V DL RI   LGEE QA RIAHA
Sbjct: 1   MQLDEAERGFSFQKNGPLDMRMSATGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHA 60

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I KRR   PF+TT+DL+ LI+        ++IHPATR FQALRIFVN+E+ ELAQ L +A
Sbjct: 61  IEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAA 120

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           E  LK GG L+VV+FHSLEDR+VKKFF+ R+GK    RH+  ++   A F ++ K +V  
Sbjct: 121 ETVLKPGGRLVVVTFHSLEDRIVKKFFSDRAGKASGSRHLPAAHERAATFTTVGKSMVSA 180

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQFRG 341
           ++ +   N R+RSAKLRAG RT   +   D S    P L +L +  G
Sbjct: 181 SEAEAESNPRARSAKLRAGQRTAAAAEAADMSLFGFPNLASLGKLGG 227


>gi|13537286|dbj|BAB40632.1| hypothetical protein [Listonella pelagia]
          Length = 189

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P    +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           K GPLDMRM  + G+  S  +  A + D+T ++   GE+K A RIA  IV  R++   +
Sbjct: 120 KDGPLDMRMDPTSGMPVSQWLMDAELDDITWVIREFGEDKHARRIAKGIVAYRENEENE 178


>gi|145349365|ref|XP_001419106.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579337|gb|ABO97399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 254

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H P +L + IA L  P    V +D TFG GG++R           + A D DP A+  G+
Sbjct: 1   HTPAMLAETIAALVAPDRSGVYVDGTFGRGGHTRGILAALSAEGRLHAFDMDPEAIKVGK 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +     +F +  A F  + D +        GV  DLG+SS Q D   RGF  ++ GPL
Sbjct: 61  E-LEREDSRFKIHHAPFGCMADVLRPLGVKPSGVFLDLGISSPQFDDSSRGFRPEQDGPL 119

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQSAPFQTTQ 189
           D+R     G+ AS+ +   + ++L R++   GE        RI  AIV  R++    +T 
Sbjct: 120 DLRFDVERGVPASEYLRLVSREELRRVIHEYGETTDPIAARRITDAIVLARENGSLPSTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
              + +       +   +HPA  +FQALRI +N E +E+ +G+ +A   +   G L +++
Sbjct: 180 KEFAALVAKAKGKEYQMMHPAKLTFQALRIALNQEFDEMRRGMHAAFDIMPEHGRLGILT 239

Query: 250 FHSLEDRLVKKFFAS 264
           +   E  +V  FF  
Sbjct: 240 WKHSECAIVVDFFRD 254


>gi|67969111|dbj|BAE00910.1| unnamed protein product [Macaca fascicularis]
          Length = 450

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 175/362 (48%), Gaps = 75/362 (20%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKV---------------------------------IL 41
           T+   H+PV++++V+  L+P  G++                                  L
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFL 126

Query: 42  DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           D TFG+GG++++  +  S+  + ALDRDP A +  +     Y ++       FSQ +  +
Sbjct: 127 DMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKKIRAVLGQFSQAEALL 186

Query: 100 PD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQ 150
                     DGV+ DLG SSMQ+D  +RGFS +K GPLDMRM         +A+DVVN 
Sbjct: 187 TKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNA 246

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK-- 203
            +   L  IL   GEEK A +IA AIV+ R   P   TQ L+S+         +Y  K  
Sbjct: 247 LDQPALASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDL 306

Query: 204 -NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
                H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F 
Sbjct: 307 LQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366

Query: 263 -------------ASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQE---DV 300
                          +  K   +     +         P +++ I KK +  +++   ++
Sbjct: 367 LGISMTERFNLSVRQQVMKTSQLGSGHENTEEVSMRRAPLMWELIHKKALFKSEQSYREI 426

Query: 301 AF 302
             
Sbjct: 427 RI 428


>gi|161870663|ref|YP_001599836.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 053442]
 gi|161596216|gb|ABX73876.1| S-adenosyl-methyltransferase mraW [Neisseria meningitidis 053442]
          Length = 264

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/253 (37%), Positives = 139/253 (54%), Gaps = 6/253 (2%)

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +    ++  +    F+  Q  +       VDG +FDLG+SS QID G RGFSF+   P
Sbjct: 3   EELARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAP 62

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L
Sbjct: 63  LDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKL 122

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FH
Sbjct: 123 AQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFH 181

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA 
Sbjct: 182 SLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAV 241

Query: 311 LRAGMRTVERSIE 323
           LR   RT     E
Sbjct: 242 LRVAERTAGPIPE 254


>gi|297268190|ref|XP_002799639.1| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 2 [Macaca
           mulatta]
          Length = 452

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 158/300 (52%), Gaps = 53/300 (17%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKV---------------------------------IL 41
           T+   H+PV++++V+  L+P  G++                                  L
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFL 126

Query: 42  DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           D TFG+GG++++  +  S+  + ALDRDP A +  +     Y +Q       FSQ +  +
Sbjct: 127 DMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAVLGQFSQAEALL 186

Query: 100 PD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQ 150
                     DGV+ DLG SSMQ+D  +RGFS +K GPLDMRM         +A+DVVN 
Sbjct: 187 TKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNA 246

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK-- 203
            +   L  IL   GEEK A +IA AIV+ R   P   TQ L+S+         +Y  K  
Sbjct: 247 LDQPALASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDL 306

Query: 204 -NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
                H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F 
Sbjct: 307 LQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366


>gi|71031997|ref|XP_765640.1| S-adenosyl-methyltransferase mraW [Theileria parva strain Muguga]
 gi|68352597|gb|EAN33357.1| S-adenosyl-methyltransferase mraW, putative [Theileria parva]
          Length = 389

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 50/294 (17%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+PV+L++ +  L   P  + LD T G GG++    +       +I++DRDP +V   +
Sbjct: 72  EHIPVMLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRLNPKGKLISIDRDPESVYFNR 131

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKGVD---------------------------- 105
           + ++ Y E  + S+    FS + D +    +                             
Sbjct: 132 KRLKSYIEESRLSVEIGKFSGIIDLLKSHKLPTEGYTGFFLPILLFKLVISTLYLLYKEF 191

Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS----------------GISASDVVN 149
            +V DLG+S+ Q++   RGFS+ K+GPLDMRMS                    +A  +VN
Sbjct: 192 RIVADLGLSTHQLENSKRGFSYMKNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVN 251

Query: 150 QANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208
           +++   L +I    G+E +A+ IA   I KRR      +T+ L S++  ++     +++ 
Sbjct: 252 KSDESTLRKIFKEFGQEPRAASIAKKIIEKRRILGEIDSTEKLKSVVMDSLPMFHRSKMR 311

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
             +R FQALRI VN+E+ EL+  L    + LK  G  + +S+H+LEDRLVK  F
Sbjct: 312 TLSRIFQALRIKVNDELNELSSFLNFIPQLLKYNGRFVCISYHALEDRLVKNSF 365


>gi|213025088|ref|ZP_03339535.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 165

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 11/166 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIA 165


>gi|145627903|ref|ZP_01783704.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
 gi|144979678|gb|EDJ89337.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
          Length = 223

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 16/225 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          ++G++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM    G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIF 220
           +SA    T+ LS   Q           K+   HPATRSFQA+RIF
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIF 222


>gi|304163|gb|AAC36835.1| Putative product of orfB has significant sequence identity to
           putative product of orfB sequence upstream of pbpB gene
           in E.coli. putative [Bacillus subtilis]
          Length = 204

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 111/202 (54%), Gaps = 3/202 (1%)

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+    PLDMRM  S   SA +VVN+   +DL RI    GEEK + +IA  I
Sbjct: 1   LDTPERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKI 60

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + R  +P QTT  L  LI+  +    + +  HPA R FQA+RI VN+E+    + L  A
Sbjct: 61  EEARMKSPIQTTGQLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQA 120

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVV 294
            + LK GG + V++FHSLEDR+ K  F  +S        +           + IT+K + 
Sbjct: 121 IEVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPIT 180

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
            +QE++  N R+RSAKLR   +
Sbjct: 181 ASQEELEENNRARSAKLRIAEK 202


>gi|258539486|ref|YP_003173985.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705]
 gi|257151162|emb|CAR90134.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705]
          Length = 214

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM       A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQAL 217
            L  LI+  +   ++    HPA +S    
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKSLSGY 210


>gi|254671182|emb|CBA08306.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha153]
          Length = 249

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 5/235 (2%)

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQ 150
           F +                 G+SS QID G RGFSF+   PLDMRM    G+SA++ +  
Sbjct: 7   FRRHWTVWVSARWTVRCLIWGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAV 66

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210
           A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ + V   +     PA
Sbjct: 67  ASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRT-RERGQDPA 125

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
           TR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F    S    
Sbjct: 126 TRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAP 185

Query: 271 AVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
             R   +  ++      + + +  + P + ++A N R+RSA LR   RT     E
Sbjct: 186 LPRWAAVREADLPEPPLKIVGR-ALKPGEAEIAANPRARSAVLRVAERTAGPIPE 239


>gi|328773130|gb|EGF83167.1| hypothetical protein BATDEDRAFT_21617 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 434

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 41/294 (13%)

Query: 16  TIGDHVPVLLEKVIALLNP----------------APGKVILDATFGAGGYSRSFCKM-G 58
           T  DH PVLL  V+ +L+P                   ++I DATFG GGY+++      
Sbjct: 49  TKPDHKPVLLVPVVDILSPEFDLQSRERQSQRVRFQRPRLICDATFGNGGYTKALLDKMD 108

Query: 59  SNVIALDRDPFAVSCGQE--TMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFD 110
             V  +D+DP A+    +     +YK +       FS +Q+ +       +  +DG+VFD
Sbjct: 109 CKVFCVDQDPLAIERAMDMSLKPEYKNRLIPIHGKFSDIQNLIAPYTASHEACLDGIVFD 168

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           +G+SS Q+D   RGFSF+K GPLD                    DL RIL   GEEK A 
Sbjct: 169 IGISSNQLDDASRGFSFRKDGPLD----------------YPEMDLVRILQQYGEEKNAY 212

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +I   I   R      TT  L+ +I K V   ++ +      + + +RI++N+E+++L Q
Sbjct: 213 KIVRMIAAIRSKTYINTTTQLAQIIAKAVGKEEHWQQGHKHPAMKTIRIYINDELKQLQQ 272

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           GL  AE+ LK  G  +VV+FHSLEDR+VK+FF + +  V       P     + 
Sbjct: 273 GLVMAERLLKPDGRCVVVTFHSLEDRIVKRFFQACAQGVTPDELPPPMTQQESR 326



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%)

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            F+  E+  +  +        +A    +           ++KK +VP ++++  N RSRS
Sbjct: 356 GFNPDEELSMDHYTLVTMHDQLASFSAVKETGREPSMIPLSKKAIVPDEKEMQENSRSRS 415

Query: 309 AKLRAGMRTVERSIEDDSF 327
           AKLRA  RT   +    + 
Sbjct: 416 AKLRAARRTNHPTTYTQNL 434


>gi|313106950|ref|ZP_07793153.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310879655|gb|EFQ38249.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 247

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 144/246 (58%), Gaps = 8/246 (3%)

Query: 78  MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           M     +F + Q +F++L D V     +  VDGV+ DLGVSS Q+D  +RGFSF   GPL
Sbjct: 1   MAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPL 60

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL+
Sbjct: 61  DMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLA 120

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFHS
Sbjct: 121 EVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHS 179

Query: 253 LEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F    +        R +   +        +  K    ++E++  N RSRSA 
Sbjct: 180 LEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEEELKANPRSRSAV 239

Query: 311 LRAGMR 316
           +R   +
Sbjct: 240 MRVAEK 245


>gi|205373087|ref|ZP_03225892.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4]
          Length = 184

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 7/169 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
            + +H  VLL + +  L   P  + +D T G  G+S         G ++ A D+D  A+ 
Sbjct: 12  NMFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  Y ++ +  ++ F  L+  + +    GVDG+++DLGVSS Q+D  +RGFS+  
Sbjct: 72  HAAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHH 131

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
             PLDMRM   G +SA +VVN+ + + L RI    GEEK + +IA  + 
Sbjct: 132 DAPLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKMK 180


>gi|315606646|ref|ZP_07881657.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574]
 gi|315251656|gb|EFU31634.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574]
          Length = 380

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 8/239 (3%)

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            + F+  ++ F  L++++   GVD +   + DLGVSS   D   RGFSF+   PLDMRM+
Sbjct: 145 PQPFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMN 204

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
             G  +A+D+VN+ +   L  +  + GE K + RIA A+VK R     +TTQD    ++ 
Sbjct: 205 KRGGRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEP 264

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
              F +        + FQALRI VNNE+  L + L +A + LK GG L V+++HSLEDR+
Sbjct: 265 --LFRREREKKDMAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRI 322

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           VK    + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR   +
Sbjct: 323 VKNVMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 379



 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
          I      HVPVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D  
Sbjct: 2  IKTAETYHVPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDAD 61

Query: 70 A 70
          A
Sbjct: 62 A 62


>gi|288925513|ref|ZP_06419446.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17]
 gi|288337729|gb|EFC76082.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17]
          Length = 393

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 8/239 (3%)

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            + F+  ++ F  L++++   GVD +   + DLGVSS   D   RGFSF+   PLDMRM+
Sbjct: 158 PQPFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMN 217

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
             G  +A+D+VN+ +   L  +  + GE K + RIA A+VK R     +TTQD    ++ 
Sbjct: 218 KRGGRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEP 277

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
              F +        + FQALRI VNNE+  L + L +A + LK GG L V+++HSLEDR+
Sbjct: 278 --LFRREREKKDLAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRI 335

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           VK    + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR   +
Sbjct: 336 VKNVMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 392



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
          PVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D  A
Sbjct: 2  PVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDADA 53


>gi|119599130|gb|EAW78724.1| hCG2022166, isoform CRA_b [Homo sapiens]
          Length = 333

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 123/309 (39%), Gaps = 51/309 (16%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RG S 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSL 186

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +K GPLD+RM      ++ +  +                      A  I    +     T
Sbjct: 187 RKDGPLDIRMDDLLQQSTYIATKTFQ-------------------ALRIFVNNELNELYT 227

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
                    KT              SF +L   +                +++   +   
Sbjct: 228 G-------LKTAQKFLRLGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTS 280

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
                 E+        +                 P +++ I KKV+ P  +DV  N R R
Sbjct: 281 QLGSDHENTEEVSMRRA-----------------PLMWELIHKKVLSPQDQDVQDNPRGR 323

Query: 308 SAKLRAGMR 316
           SAKLRA ++
Sbjct: 324 SAKLRAAIK 332


>gi|15639375|ref|NP_218824.1| hypothetical protein TP0384 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025617|ref|YP_001933389.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum
           SS14]
 gi|8134809|sp|O83399|RSMH_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825951|sp|B2S2Y1|RSMH_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3322662|gb|AAC65368.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018192|gb|ACD70810.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059774|gb|ADD72509.1| S-adenosyl-methyltransferase MraW [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 379

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 150/360 (41%), Gaps = 73/360 (20%)

Query: 20  HVPVLLEKVIALLNPA--------------PGKVILDATFGAGGYSRSFCKMGSNVIAL- 64
           H PVL+++ + LL PA               G   +D T G GG++++F      + AL 
Sbjct: 29  HQPVLVQECLTLLEPAIVGISRGADSTRDGAGAFFIDGTLGDGGHTQAFLHAYPALRALG 88

Query: 65  -DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----------------------D 101
            + DP  ++  +  +  + ++                                       
Sbjct: 89  VEIDPSMLARARARLTPFGKRLRYVLGWSDVFFASAYASAPASPATGRTAAGAAGVPGAY 148

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160
                V+ DLG+S        RGFSF +   LDMR+      +A+D++N+     L ++ 
Sbjct: 149 PAPQAVLLDLGISFFHYRGAMRGFSFAEEHMLDMRLDPQASQTAADLLNRLPQARLAQLF 208

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN-------------NRI 207
              GEE+ A RIA A+  +R+ APF + +  + ++ + V   +               ++
Sbjct: 209 FEGGEERYARRIAQAVCAQRRQAPFCSARAFAEVVARVVPPMRTARFGKRRGVLGVLPKL 268

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPAT++FQALRI VN E+E L + L +A  AL  GG L V+SFHS EDR+VK  F   + 
Sbjct: 269 HPATKAFQALRIAVNRELERLPRLLTAAFTALAPGGRLAVISFHSREDRIVKVHFRHWAK 328

Query: 268 KVMAV-RHMIPSNAHPAVFQSITKKVVVPTQED----------VAFNRRSRSAKLRAGMR 316
           +     R  I S    A    ITKK +VP+  +                     LR   +
Sbjct: 329 RCSCPARVPICSCGGVARASLITKKPLVPSCVERAANAASRSAT----------LRVIEK 378


>gi|323455669|gb|EGB11537.1| mraW S-adenosyl-L-methionine-dependent methyltransferase-like
           protein [Aureococcus anophagefferens]
          Length = 404

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 27/314 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74
           G HVP+++ + +  L      V +D T G GG+S +       G+ ++ +DRD   ++  
Sbjct: 106 GTHVPIMVAECLEHLRVGDAAVAVDCTLGYGGHSTALVAALPRGARLLGVDRDGEELAKT 165

Query: 75  QETMRDYKE------QFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFS 126
              + +               + ++ + D +  +   VD ++ DLG SSMQ+D  +RGF+
Sbjct: 166 AARLAEAPRAASGEVTLEQMHSNYAAVGDELARRGLAVDALLADLGCSSMQVDDPERGFT 225

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +++ GPLDMRM    G +A+D + +++  D+        +  +      A+  RR   P 
Sbjct: 226 YKREGPLDMRMDTSRGETAADWLARSSTADVAAAFRTAADFGKRDARELAVAARRAPTPA 285

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT     +    +     +      R+ QALR+ VN+E   L   L S   AL  GG  
Sbjct: 286 TTTAFAERVRGVALEEETADD-DAVKRAMQALRVAVNDEFASLDALLASLPDALAPGGRA 344

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V++FHS EDR VK+ F                     V+ ++ ++ V  + E+   N R
Sbjct: 345 VVLTFHSGEDRRVKQAFKK--------------GLAANVYSAVARRPVRASPEERRANSR 390

Query: 306 SRSAKLRAGMRTVE 319
           S   KLR  +R+ +
Sbjct: 391 SGCCKLRWCVRSKD 404


>gi|213423591|ref|ZP_03356571.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 237

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 142/238 (59%), Gaps = 9/238 (3%)

Query: 90  ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISA 144
             FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GPLDMRM    G SA
Sbjct: 1   GPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSA 60

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN 204
           ++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L+ ++       K+
Sbjct: 61  AEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEVV-AAATPVKD 119

Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264
              HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFHSLEDR+VK+F   
Sbjct: 120 KFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMRE 179

Query: 265 RSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +S        +  + A        +      ++P +++VA N R+RS+ LR   RT  
Sbjct: 180 QSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA 237


>gi|327330609|gb|EGE72355.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL097PA1]
          Length = 241

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 120/218 (55%), Gaps = 3/218 (1%)

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161
            VD V+ DLG+SS QID  +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L 
Sbjct: 9   YVDSVLLDLGLSSFQIDEVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLR 68

Query: 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRI 219
             GEEK A RI  AIV  R   P +T+  L  +I + +     +    HPA R+FQALRI
Sbjct: 69  EYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRI 128

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
            VN E+E L   L  A   L  GG ++V+S+HSLEDR VK+ F             +   
Sbjct: 129 AVNREMETLPAVLPRALDRLDVGGRIVVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPE 188

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +  A F  +T+    P  ++VA N RS SA+LR   R 
Sbjct: 189 SMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERV 226


>gi|269469017|gb|EEZ80581.1| S-adenosylmethionine-dependent methyltransferase [uncultured SUP05
           cluster bacterium]
          Length = 233

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/218 (40%), Positives = 133/218 (61%), Gaps = 7/218 (3%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGI 162
           +DG++ DLGVSS Q+D   RGFSF   GPLDMRM    G+SA+  +  AN  ++  +L  
Sbjct: 14  IDGILMDLGVSSPQLDNAQRGFSFNHDGPLDMRMDQTQGMSAAQWLTSANETEIADVLYQ 73

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222
            GEE+++ RIA AI + +Q     TT  L+++I   +   KN   HPATRSFQA+RIF+N
Sbjct: 74  YGEERKSRRIASAIKRYQQDKSIDTTLQLANIIASVIKTQKN--KHPATRSFQAIRIFIN 131

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-- 280
            E+++L++ L    + L  GG L+V+SFHS+EDR+VK+F    S +  A + +   ++  
Sbjct: 132 QELKQLSETLDQIIELLACGGRLVVISFHSIEDRIVKQFIQKHSRQKQAPKGLPVMDSEF 191

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                + + KK    ++E++  N+RSRSA LR   RT 
Sbjct: 192 KKTALKDLGKKF--ASKEELQTNKRSRSAILRTAQRTE 227


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/232 (39%), Positives = 130/232 (56%), Gaps = 4/232 (1%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGI 162
           VDG++ DLG+SS QID G RGFSF+  GPLDMRM    G +A++ +   + K L  ++  
Sbjct: 13  VDGILLDLGISSPQIDEGVRGFSFRFDGPLDMRMDQSRGKTAAEWLATMSEKQLAEVIRD 72

Query: 163 LGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221
            GEE+ A ++A AIVK R       TT  L+ ++   +  ++  + +PATR+FQALRIFV
Sbjct: 73  YGEERFAKQVARAIVKEREDGHAITTTGQLAKIVAGAIPKNEPGQ-NPATRTFQALRIFV 131

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N E+EEL+  L    + L+  G L V+SFHSLEDR+VK+F  S   +      +      
Sbjct: 132 NQELEELSLVLPDCLQLLRPQGRLAVISFHSLEDRIVKRFIQSEVDRDNLPAGLPVRAKD 191

Query: 282 PAVFQSI-TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332
               + +   K + P + +VA N RSRSA LR   RT   +      V +P 
Sbjct: 192 LPQPRLLAVGKAIKPGKAEVAANVRSRSAVLRVAERTQGEAFSRRKVVLMPH 243


>gi|156095737|ref|XP_001613903.1| S-adenosyl-methyltransferase mraW [Plasmodium vivax SaI-1]
 gi|148802777|gb|EDL44176.1| S-adenosyl-methyltransferase mraW, putative [Plasmodium vivax]
          Length = 471

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 69/343 (20%)

Query: 28  VIALLNPAPG---KVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY 81
            ++ L P      +  +DAT G GG++    K     S VIA+D+D  ++   Q+ ++ Y
Sbjct: 145 SLSRLPPRENPPVEYFIDATLGGGGHTLEMLKKLAPTSKVIAIDKDIESIYYNQQKLQRY 204

Query: 82  --KEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               + ++    +  +   +            G++ DLG S+ Q+ CG RGFS++ +G L
Sbjct: 205 VDANKLTMIHGDYRYIIHLLHRYGLPLFGSYSGILLDLGASTHQLRCGRRGFSYKHNGLL 264

Query: 134 DMRMSCS--------------------------------------GISASDVVNQANVKD 155
           DM M                                              +++N  + + 
Sbjct: 265 DMSMDRYTDEEYARMCREGAERGGSGSNGGFQVKQANRANPQTEPPKRIGEILNTYSPQQ 324

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214
           L  I+   G+EK+AS+IA  I + R+S     TT  L  ++  T   +        +R F
Sbjct: 325 LRHIMHTYGQEKKASKIAKKIAQWRKSRGTITTTHQLRDIVLSTCKQNYKANQKVLSRVF 384

Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274
           Q+ RI+VN+E++ L + L S+ K L+A   L+V+S+HSLE + V++F  SR         
Sbjct: 385 QSFRIYVNDEMKALKEFLLSSYKLLRARKRLVVISYHSLEYQCVERFVHSR--------- 435

Query: 275 MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                    +++ I    + P++ ++  N+ +RSAK+    + 
Sbjct: 436 -------KNLWEKINDVDITPSEGELKANKSARSAKMSVFEKV 471


>gi|330981226|gb|EGH79329.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 186

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 9/181 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6   THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 66  A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T D
Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184

Query: 191 L 191
           L
Sbjct: 185 L 185


>gi|165377202|ref|NP_689849.2| probable methyltransferase-like protein 15 isoform 2 [Homo sapiens]
 gi|119588674|gb|EAW68268.1| methyltransferase 5 domain containing 1, isoform CRA_c [Homo
           sapiens]
          Length = 273

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 12/192 (6%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSLI 195
           P   TQ L+S++
Sbjct: 247 PITRTQQLASIV 258


>gi|126643217|ref|YP_001086201.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           ATCC 17978]
          Length = 223

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 8/221 (3%)

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRIL 160
           + VDG++ DLGVSS Q+D  +RGFSF + GPLDMRM    G++A++ + +   +DL  I+
Sbjct: 7   QSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEVEEEDLANII 66

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
              GEE+ + RIA AI +        TT  L+ +++      + ++ HPATR+FQA+RI 
Sbjct: 67  YQYGEERYSRRIARAIKQA---GKLDTTAQLAEIVKTAHPKWEKHK-HPATRTFQAIRIA 122

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +N E++++   L  A   LK  G L V+SFHSLEDRL+K+F    S         +P   
Sbjct: 123 INKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQQ 182

Query: 281 -HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
                 + I++  V  ++E+V  N RSRSA LR   R  ++
Sbjct: 183 VDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 221


>gi|21749636|dbj|BAC03631.1| unnamed protein product [Homo sapiens]
          Length = 273

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 12/192 (6%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +K GPLD+RM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   
Sbjct: 187 RKDGPLDVRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246

Query: 184 PFQTTQDLSSLI 195
           P   TQ L+S++
Sbjct: 247 PITRTQQLASIV 258


>gi|118594404|ref|ZP_01551751.1| methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440182|gb|EAV46809.1| methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 213

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167
            DLG+SS Q+D  +RGFSF+  G LDMRM+     +A+D+VN  +  +L  IL + GEE+
Sbjct: 1   MDLGISSPQVDNAERGFSFRLDGQLDMRMNQDHLETAADIVNSYDEAELIYILKVYGEER 60

Query: 168 QASRIAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
            A RIA +IV  R      + T  L+ +I K V   +  +  PATR+FQALRI VN EIE
Sbjct: 61  FAKRIARSIVAHRADVGRIEKTIQLAQIINKAVPKREPGK-DPATRTFQALRIKVNQEIE 119

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAV 284
           E+ + L  A   L   G + V+SFHSLEDR+VK F   +    +  +++    S    + 
Sbjct: 120 EIEKALPIAFDLLNKNGRIAVISFHSLEDRVVKNFAKQQLETDLIPKYIPIKASEIRKSN 179

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            + I  K+++P++ ++  N RSRSAKLR   R  E
Sbjct: 180 LKKI-GKLIIPSEIEIKENPRSRSAKLRVIERIEE 213


>gi|323222501|gb|EGA06871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 149

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 11/150 (7%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++
Sbjct: 3   ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q        +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLT 157
           + GPLDMRM    G SA++ +  A   D+ 
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIA 149


>gi|68163389|ref|NP_001020152.1| hypothetical protein LOC295985 [Rattus norvegicus]
 gi|60551447|gb|AAH91215.1| Similar to RIKEN cDNA 0610027B03 [Rattus norvegicus]
          Length = 286

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 26/239 (10%)

Query: 10  SSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
                  +   H+PV++++V+  L P  G+V LD TFG+GG+S++  +   +  V ALDR
Sbjct: 61  EETDSEAMAKLHIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDR 120

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCG 121
           DP A +  +     Y  Q       FSQ +  +         VDGV+ DLG SSMQ+D  
Sbjct: 121 DPVAFTLAERLSEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAP 180

Query: 122 DRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI+
Sbjct: 181 ERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAII 240

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R + P   TQ L+S++              A   F++L          +        
Sbjct: 241 QARSTYPISRTQQLASIV--------------AGTLFKSLCCLRLTSSINMHCMYICIY 285


>gi|223993323|ref|XP_002286345.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977660|gb|EED95986.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 144/382 (37%), Gaps = 106/382 (27%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM------------------ 78
            +D T G GG+S++  +       +I  D DP A+S     +                  
Sbjct: 114 FIDGTLGGGGHSQAILQQLRPCDVLIGCDVDPDALSTASNRLVDYLGTREYILGKSSTVD 173

Query: 79  --------RDYKEQFSLFQATFSQLQDYVPD----------------------------- 101
                    + +  F   Q+ F  L + +                               
Sbjct: 174 AEEMACQWEEGRPMFIPVQSNFRNLINVLSKVRHPVSGRLLLGSRDDSIGDGQKDAVEFP 233

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS------------GISASDVVN 149
            G +G++ DLGVSS QID G+RGF+F K GPLDMRMS +             ++A+D+ N
Sbjct: 234 NGANGMLLDLGVSSHQIDTGERGFAFMKEGPLDMRMSGNTPQISTSATIGSSLTAADICN 293

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR-IH 208
           + +   +  IL   G+E +A RIA AI+  R            + +  T    K    I 
Sbjct: 294 EFDEPTIIDILSTYGDEPRAKRIASAIIASRPLYTTTDLVHAINSVTPTFARQKRAGLIA 353

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG---------------LLIVVSFHSL 253
            + R FQALRI VN E   L   L      +                   +L V+S+HS+
Sbjct: 354 TSARVFQALRIVVNEEDGALKDVLERVAPWVLCRSGGLMNVGDDEKRDDGILAVLSYHSM 413

Query: 254 EDRLVKKFFASRS-------------------GKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           ED++ K+     S                   G V+    ++        F+ +  K   
Sbjct: 414 EDKMAKRVMRDGSVDFLDGGSKGGSVLERDMFGNVINGDGIVDDAKSHLPFEPV-GKPRK 472

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
            T E++A N R+RSA LR G+R
Sbjct: 473 ATDEEIAVNSRARSATLRVGIR 494


>gi|56808163|ref|ZP_00365945.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Streptococcus
           pyogenes M49 591]
          Length = 215

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +       +DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN     DL +I    GE+K + +IA  I + R   P + T +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQAL 217
           L+ LI+      +   + HPA + FQ  
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQLF 214


>gi|118354992|ref|XP_001010757.1| MraW methylase family protein [Tetrahymena thermophila]
 gi|89292524|gb|EAR90512.1| MraW methylase family protein [Tetrahymena thermophila SB210]
          Length = 422

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 35/327 (10%)

Query: 14  HHTIGDHVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMGSNVI--A 63
             T   H PVL++K+  +L        +    K ++D T G+ G+++ F +    +    
Sbjct: 94  TATNKVHYPVLIDKITQVLQEEFYPHSSSHSEKCLVDCTLGSAGHAKHFLQKFPYLYILG 153

Query: 64  LDRDPFAVSCGQ-----ETMRDYKEQFSLFQATFSQL----------QDYVPDKGVDGVV 108
           LD DP  +         +     + +F      F+ +          +++   K    + 
Sbjct: 154 LDLDPRMLQYINDNVKSQLSHSDQNRFKTRNENFTNIDKINLYKIFEEEFPSYKNFHAIF 213

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEE 166
            DLG +++ ++  + GFS+ ++G LDMR + S    SA+D++N+A+  +L  I+   GE+
Sbjct: 214 ADLGYNTLHLENSEWGFSYLRNGKLDMRYNQSSQTNSAADILNKASYLELFEIIRQYGED 273

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLI--QKTVYFSKNNRIHPATRSFQALRIFVNNE 224
             A  I+  I+K+RQ  PF+TT+D+  LI   ++ Y  K  +    T+ FQALRI  N E
Sbjct: 274 PNADVISQMIIKQRQIKPFETTKDVVDLILEDQSGYSFKGGQYKAITKLFQALRIATNQE 333

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +  L   +      L   GL I+++FHSLE+ +V++               I        
Sbjct: 334 LTNLQVFMDKIYDKLLKDGLGIIITFHSLEENIVEQKLRDLVINRQ-----IEVRKRQKN 388

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKL 311
            + +      P   ++  N +SRSAKL
Sbjct: 389 IEILQMG-EKPDINELQKNSKSRSAKL 414


>gi|307108403|gb|EFN56643.1| hypothetical protein CHLNCDRAFT_144447 [Chlorella variabilis]
          Length = 468

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 94/235 (40%), Positives = 126/235 (53%), Gaps = 22/235 (9%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162
           VD ++ DLG+SSMQ+D  DRGFSF + GPLDMRM  +  +SA   VN     +L R++  
Sbjct: 233 VDAILLDLGISSMQVDTADRGFSFLRDGPLDMRMDPAAPLSAELAVNTWPEGELGRVIRE 292

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN---------------NRI 207
            GEE+    IA  IV  R+ AP  TTQ L   I                           
Sbjct: 293 YGEERHWRGIARRIVAAREEAPITTTQQLVRAIGSPGGGGGGGGGRGRGRRSGGGDARFK 352

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPATR+FQALRI VN E++ +AQ L  A + L  GG L V++FHSLEDR+VK  F + +G
Sbjct: 353 HPATRTFQALRIAVNGELQSIAQALPDAIECLAPGGRLAVITFHSLEDRIVKWAFRAAAG 412

Query: 268 ----KVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                     + +P       A  + +T++ V P++E+ A N RSRSAKLR   +
Sbjct: 413 MAPSDEQLPSYCLPFEEAAAQASVRILTRRPVAPSEEEQAANVRSRSAKLRVVEK 467



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL +V+A       +  +D T GA G++ +  +      +++  D DP A  
Sbjct: 84  HISVLLSEVLAAFEGRAVRRYVDGTLGAAGHATAMLRQHPELESLVGFDLDPTAHQ 139


>gi|221061767|ref|XP_002262453.1| SAM dependent methyltransferase [Plasmodium knowlesi strain H]
 gi|193811603|emb|CAQ42331.1| SAM dependent methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 507

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 72/345 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY--KE 83
           ++L+     +  +DAT G GG++    K     S V+A+D+D  ++   ++ ++ Y    
Sbjct: 179 VSLMQNTSPEYYIDATLGGGGHTLEILKSFPRTSRVVAIDKDIESIYYSKQKLQCYVDTN 238

Query: 84  QFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++    +  +   +            G++ DLGVS+ Q+ CG RGFS+Q +G LDM +
Sbjct: 239 KLTMIHGDYRYIIHLLHRHGLPLFGRYSGILLDLGVSTHQLKCGRRGFSYQHNGLLDMSI 298

Query: 138 SCSGISASDVV--------------------------------------------NQANV 153
                   D +                                            N  + 
Sbjct: 299 DRYTDEEYDRMCRESIEREEGGSNEDYQYDQTNQIKRAKGESPQSEPKKGIGEILNTYSA 358

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
           + L  I+   G+EK+A +IA  IV+ R+S+   +TT  L  ++  T   +        +R
Sbjct: 359 QQLRFIMHTYGQEKKAYKIAKKIVQWRKSSGTIRTTYQLRDIVLSTCKKNYKANQKVLSR 418

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
            FQ+ RI++N+E++ L + L S+ K L+A   L+V+S+HSLE + V+ F  SR       
Sbjct: 419 VFQSFRIYINDEMKALKEFLLSSYKLLRAKKRLVVISYHSLEYKCVEMFVHSR------- 471

Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                      +++ I    + P +E++  N+ +RSAK+    + 
Sbjct: 472 ---------KNLWKKINDVDITPNEEELKANKSARSAKMSVFEKI 507


>gi|330938035|gb|EGH41807.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 246

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 92/242 (38%), Positives = 141/242 (58%), Gaps = 8/242 (3%)

Query: 82  KEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   GPLDMRM
Sbjct: 4   DGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRM 63

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
               G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL+ +++
Sbjct: 64  DPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADLAEVLK 123

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                 +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR
Sbjct: 124 VANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDR 182

Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA +R  
Sbjct: 183 IVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVA 242

Query: 315 MR 316
            +
Sbjct: 243 EK 244


>gi|124806575|ref|XP_001350761.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23496889|gb|AAN36441.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 508

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 58/313 (18%)

Query: 40  ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95
            +DAT G GG++           +I +D+D  A+   +  ++ +    +  L    +  +
Sbjct: 207 YIDATLGGGGHTLEILNKIPNCRIIGIDKDIEALYYNKIKLKRFINNNKLKLIHGDYGNI 266

Query: 96  QDYVPD------KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS--------- 140
              +            G++ DLGVSS Q+ C DRGFS++ +G LDM M+           
Sbjct: 267 LHLLHLHSLPIFNYYSGILIDLGVSSHQLKCCDRGFSYKYNGILDMNMNKYTESQYLSKL 326

Query: 141 ---------------------GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
                                     +++N  ++K L  I+   GEEK+A +IA  I++ 
Sbjct: 327 FRNDNEHINDINDIKKNPKNSYNKLHNILNTYSLKKLKFIIDTYGEEKKALKIAKKIIQW 386

Query: 180 RQSAPFQ-TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+      TT  L ++I  T   +  +     +R FQA RI++N E++ L Q L S+ K 
Sbjct: 387 RKENGMILTTFQLKNIILSTCKQNYKSNNKVLSRVFQAFRIYINQELKTLKQLLISSHKL 446

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK G  LIV+++HSLE + V+ F      K   +                    V+P+ E
Sbjct: 447 LKTGKKLIVITYHSLEKKCVELFIEKNKQKWTKLHQN-----------------VMPSDE 489

Query: 299 DVAFNRRSRSAKL 311
           ++  N+ +RSAK+
Sbjct: 490 EIKLNKSARSAKM 502


>gi|328462958|gb|EGF34770.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus MTCC
           5462]
          Length = 231

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           I  T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A
Sbjct: 45  IAMTEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAA 104

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++           Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS+
Sbjct: 105 IAAVTRQFGTLPPQLTLVHRNFRDLGAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSY 164

Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
           +   PLDMRM       A   VN+    +L RI    GEE   SR+   + K
Sbjct: 165 RFDAPLDMRMDQRQTLDAKTXVNEWPYAELVRIFSRYGEEHFLSRLRVELSK 216


>gi|225166427|ref|ZP_03728086.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2]
 gi|224799334|gb|EEG17902.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2]
          Length = 192

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             P DMRM    G+ AS  +  A    L R +   GEE+ A+R+  AI   R +     T
Sbjct: 2   DAPADMRMDPRTGVPASLWLETATDDMLLRAIRDYGEERHATRVVRAIKDARGTGTLSRT 61

Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L+ LI   +        +IHPATR+FQ +RI +N+E+  L + L +A   L++GG+L 
Sbjct: 62  ASLAELIANAIPARDRFSAKIHPATRAFQGIRIAINDELGALERALPAAFALLRSGGVLA 121

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
            +SFHSLEDR VK+ F    G+  +     P++      + +T+K V P+ +++A N R+
Sbjct: 122 AISFHSLEDRPVKQAFRRFCGQPESHDDHRPADLREKFAEPLTRKPVTPSDDELAANPRA 181

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 182 RSAKLRAIRK 191


>gi|198431221|ref|XP_002121456.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Ciona intestinalis]
          Length = 343

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 11/176 (6%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAV 71
                 H+PV+ E++++ LN   G VI+D TFGAGG+++   +      VIALDRD  A 
Sbjct: 30  SKEAALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRDEKAF 89

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
              Q+  + +K +       FS+L        + +  ++  + D G SSMQ D  +RGFS
Sbjct: 90  EIAQDLSKKFKGRIIPLLGKFSELDKLLSENGIVENSLNAALLDAGCSSMQFDQPERGFS 149

Query: 127 FQKSGPLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             + GPLDMRM  +     I+A+DVVN  + ++LT I+   G+E+ A  I+ +I++
Sbjct: 150 LVRDGPLDMRMDGNRSEGQITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIE 205


>gi|226328337|ref|ZP_03803855.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198]
 gi|225203070|gb|EEG85424.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198]
          Length = 216

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 120/218 (55%), Gaps = 8/218 (3%)

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS Q+D  +RGFSF + GPLDMRM  + G SA+  +  A   D+T +L   GEE
Sbjct: 1   MLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTSGQSAAQWLMTAEEDDITWVLKTFGEE 60

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A RIA AIV R ++    T     + +       K    HPATRSFQA+RI++N+E++
Sbjct: 61  RFAKRIARAIVARNKTEEPLTRTKQLADLISDASPVKERHKHPATRSFQAIRIYINSELD 120

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA--- 283
           E+ + L+ A   L   G L V+SFHSLEDRLVK+F    S   +    +  + A      
Sbjct: 121 EIEKALKGAVSVLAPEGRLSVISFHSLEDRLVKRFIRDESKGPVVPAGIPLTEAQIKELG 180

Query: 284 --VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
                SI K  + PT  +V  N R+RS+ LR   R  E
Sbjct: 181 SARLSSIHK--MKPTGVEVEENPRARSSVLRVAQRIEE 216


>gi|72384693|gb|AAZ67638.1| S-adenosyl-methyltransferase putative [Haemophilus parasuis 29755]
          Length = 187

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 2/173 (1%)

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-K 203
            +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L  +I++ +    +
Sbjct: 9   YEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIKEGIPAKAR 68

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
               HPA R FQA+RI VN+E+      +  A + +K GG + V++FHSLEDRL K+ F 
Sbjct: 69  RKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLEDRLCKQIFQ 128

Query: 264 SRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
                    R +     A+    + + +K +  T +D+  N R+RSAKLR   
Sbjct: 129 EFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRARSAKLRVAE 181


>gi|70953007|ref|XP_745633.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526017|emb|CAH81938.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 318

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 147/337 (43%), Gaps = 65/337 (19%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMR 79
           P+LL            + ++DAT G GG++    K  + +  I++D+D  A+   +  ++
Sbjct: 6   PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKYKLK 57

Query: 80  DY--KEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            Y    +  L    +  +                 ++ DLGVS+ Q+    RGFS++ + 
Sbjct: 58  SYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYKYNN 117

Query: 132 PLDMRMSCS-------------------------------GISASDVVNQANVKDLTRIL 160
            LDM M+                                 G    +++N  N+K L  I+
Sbjct: 118 ILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLKYII 177

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
              GEEK+A +IA  I++ R+      T  L ++I  T   +  +     +R FQA RI+
Sbjct: 178 QKFGEEKKAFKIAKKIIEWRKQNKEIVTTLLKNIILSTCKNNYKSNNKVLSRVFQAFRIY 237

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           VNNE+  L   L S+ K LK GG+LIV+S+HSLE++ +  F                   
Sbjct: 238 VNNELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFVK----------------N 281

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              +++ I    +VPT +++  N+ SRSAK+ A  + 
Sbjct: 282 KTQLWKQINTHPIVPTDQEIKLNKSSRSAKMFAFKKV 318


>gi|38047597|gb|AAR09701.1| similar to Drosophila melanogaster CG14683 [Drosophila yakuba]
          Length = 251

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 130/244 (53%), Gaps = 18/244 (7%)

Query: 37  GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET--MRDYKEQFSLFQATF 92
           G    D TFGAGG++R   +    + V ALDRDP A    ++     ++K +       F
Sbjct: 1   GGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKF 60

Query: 93  SQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM---SCSGISA 144
           S L     +       VDG++FD G SSMQ D   RGFS  + GPLDMRM      G++A
Sbjct: 61  SDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTA 120

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
           +DV+      DL +IL + GEEK A +IA   I  R      +TT+ L+ +I+  +    
Sbjct: 121 ADVLANVEEGDLVKILRMYGEEKAAKKIARGLIDARNALFKIETTKQLADIIENIMDGGS 180

Query: 204 NNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
                    H AT++FQA+RIFVNNE+ E+  G+  A + L+  G L+ ++FHSLED +V
Sbjct: 181 RKDKLRRHAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIV 240

Query: 259 KKFF 262
           K+  
Sbjct: 241 KRHI 244


>gi|205355535|ref|ZP_03222306.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346769|gb|EDZ33401.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 236

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 5/230 (2%)

Query: 88  FQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146
            Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS             S ISA +
Sbjct: 1   MQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYE 60

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
           ++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I K     +  +
Sbjct: 61  IINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGKGKQNHR--K 118

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266
           I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLEDR+VK+FF   S
Sbjct: 119 ISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWS 178

Query: 267 GKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
              +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA 
Sbjct: 179 KNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRAF 228


>gi|326518102|dbj|BAK07303.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 272

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/233 (37%), Positives = 122/233 (52%), Gaps = 18/233 (7%)

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRIL 160
            GVDG++ DLG+SSMQ++  DRGFS    GPLDMRM      +A D++N     ++ RIL
Sbjct: 39  CGVDGILIDLGMSSMQVNRSDRGFSVLNDGPLDMRMDPRATLTAEDILNSWPELEVGRIL 98

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALR 218
              GEE     +   IVK R++    +T +L  LIQ+T  +   +   I  ATR FQALR
Sbjct: 99  RDYGEESNWQSLQRRIVKERKTGGLHSTGELVKLIQRTCTISGGRQGWIKTATRVFQALR 158

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR------SGKVMAV 272
           I VN+E+  L   L S    L   G L V+SFHSLEDR+VK+ F          G    +
Sbjct: 159 IAVNDELRTLEDALHSCFDCLATDGRLAVISFHSLEDRIVKQTFLELIHGGEADGDDDDL 218

Query: 273 RHMIPSNAHPAVFQ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +    +     F+          +TK+ + P+QE+   N+R RSAKLR   +
Sbjct: 219 AYADIDDEDEPWFKQRVQGTNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQK 271


>gi|323445745|gb|EGB02206.1| hypothetical protein AURANDRAFT_69098 [Aureococcus anophagefferens]
          Length = 335

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNP--APGKVILDATFGAGGYSRSFCKMG---S 59
           +C TM ++     G H P + E+ +  L     P  V +D TFG GG++R   +      
Sbjct: 100 TCGTMQAS-----GTHTPAMFEECVEALGVEWNPDGVYVDGTFGRGGHTRKILEKLGPKG 154

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
            +   D DP AV+ G++ +R    +F +  A FS +   +    VDGV+ D+G+SS Q+D
Sbjct: 155 TLHGFDMDPEAVAVGEQ-LRGEDPRFVIHHAPFSSMAAVLAGVAVDGVLLDIGISSPQLD 213

Query: 120 CGDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
              RGF  +  GPLDMR         A   + +A+  +L   L   G E+     A  I 
Sbjct: 214 G-GRGFKPEVDGPLDMRFDVREGVEDAMGYLRRASRVELAAALEAYGGER--PAAARRIA 270

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGL 232
                A    +    +         +         HPA  +FQALRI VN E  EL +GL
Sbjct: 271 DAVALAKKDGSLARMTTRPFADLVERAKGKEYQAMHPAKMTFQALRIVVNREYLELERGL 330


>gi|298711101|emb|CBJ32330.1| S-adenosyl-methyltransferase MraW [Ectocarpus siliculosus]
          Length = 332

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 135/321 (42%), Gaps = 88/321 (27%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82
            +V+  L   P  V +D T G GG+S +          VI LDRDP A+      +    
Sbjct: 4   REVLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAEA 63

Query: 83  E--QFSLFQATFSQLQDYVPDKGVD--------------------------------GVV 108
           E  +F   ++ F+ +   V +  +                                 G++
Sbjct: 64  EVGRFQAVRSNFAAVGRAVRECELMLQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGIL 123

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-------------------------- 142
            DLGVSS QID   RGFSF   GPLDMRM  +G                           
Sbjct: 124 VDLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVE 183

Query: 143 --------------------SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
                               SA+DVVN A+  ++  ++   G+EK++++IA AI    ++
Sbjct: 184 KGGRGEGGGGGDGRGGGGGVSAADVVNFADESEIREMVWRYGDEKRSTKIARAI---VEN 240

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P  TT  L+ ++ +     +  +     R FQALRI VN E++ L   L  A+  ++ G
Sbjct: 241 RPIATTGQLAEVVGRCAPPKERVKT--LARVFQALRIEVNGELDALEALLEQAKHLVRPG 298

Query: 243 GLLIVVSFHSLEDRLVKKFFA 263
           G L+++S+HSLEDR VK+  A
Sbjct: 299 GRLLILSYHSLEDRRVKRVLA 319


>gi|85057932|ref|YP_456848.1| hypothetical protein AYWB_652 [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84790037|gb|ABC65769.1| conserved hypothetical protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 202

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 8/207 (3%)

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQA 169
           +G+SS QID   RGFS+  + PLDMRM+ +  I+A  ++N  +   L  I  + GE K A
Sbjct: 1   MGLSSCQIDNPQRGFSYLHNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNA 60

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
           S +   I    +  P QT+ DL S+  +   F    + H A + FQALRI VN E+E L 
Sbjct: 61  SLVVSEI---IKQRPLQTSYDLVSITDR---FCNLQKGHSAKKIFQALRIEVNQELESLK 114

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           Q L  +   LK    ++V+SFHSLEDR++K FF   S  V+  + +  +         IT
Sbjct: 115 QALEQSLDLLKPNARIVVISFHSLEDRIIKHFFKKHSTFVL-PKKLPIAIIPQTPLSIIT 173

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           KK  +P++E++  N RS SAKLR  ++
Sbjct: 174 KKAFLPSEEEMQNNSRSISAKLRVAVK 200


>gi|167752871|ref|ZP_02424998.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216]
 gi|167659940|gb|EDS04070.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216]
          Length = 183

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G +A+D+VN  +   LTRILG  GE     ++A  IV+ R + P  TT DL + +  
Sbjct: 5   QRGGGTAADLVNTLDADALTRILGDWGEIDTPWKVAACIVRARTAQPILTTADLVAAV-- 62

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
                K +     T+ FQALRI VN E+E L   L  + K L+ GG L+V+S+HSLEDRL
Sbjct: 63  APCTPKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSLEDRL 122

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK F  S + +    +        P  F+ IT+K V P+ E++  N RSRSAKLRA  + 
Sbjct: 123 VKNFLRSGNFEGRIEKDFFGKPETP--FEIITRKAVTPSSEELVRNPRSRSAKLRAAAKI 180


>gi|125580743|gb|EAZ21674.1| hypothetical protein OsJ_05305 [Oryza sativa Japonica Group]
          Length = 439

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 135/298 (45%), Gaps = 43/298 (14%)

Query: 62  IALDRDPFAVSCGQETMRD-----------------------YKEQFSLFQATFSQLQD- 97
           I +D DP A+  G+  +                         + + F   +     + + 
Sbjct: 141 IGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDEN 200

Query: 98  -YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKD 155
             V   GVDG++ DLG+SSMQ++  DRGFS  + GPLDMRM       A D++N     +
Sbjct: 201 IAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLE 260

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRS 213
           + RIL   GEE     +   IVK R      +T +L  LIQ+T   S  +   I  ATR 
Sbjct: 261 VGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRV 320

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQALRI VN+E+  L   L +    L   G L V+SFHSLEDR+VK+ F     +     
Sbjct: 321 FQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDD 380

Query: 274 HM------IPSNAHPAVFQ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                      +     F+          +TK+ + P+QE+   N+R RSAKLR   +
Sbjct: 381 DEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 438


>gi|167947445|ref|ZP_02534519.1| S-adenosylmethyl transferase MraW [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 172

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 157 TRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216
             +L   G+E+ A RIA AIV  RQ  P  TT  L+ ++       +  + HPATRSFQA
Sbjct: 12  ADVLKRYGDERHARRIARAIVAARQVEPILTTGRLAEIVSAANPAWEKGK-HPATRSFQA 70

Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           +RIF+N E+++L Q L    + L+ GG L V+SFHSLEDR+VK+F   ++        + 
Sbjct: 71  IRIFINRELDDLQQFLGQVLEVLRPGGRLAVISFHSLEDRIVKRFMRDQAKGDRFPAGVP 130

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            + A       +  K + P  ++   N R+RSA LR   R  
Sbjct: 131 VTQAQLQPRLKLLGKAIRPGADETESNPRARSAVLRVAERLA 172


>gi|123225262|emb|CAM17437.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231530|emb|CAM24680.1| methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 230

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 11/159 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +  V ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +         +DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEK 167
           LDMRM          ASDVVN  + + L  IL   GEEK
Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEK 230


>gi|294670599|ref|ZP_06735478.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307724|gb|EFE48967.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 180

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 4/175 (2%)

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           +  ++  ++   GEE+ + +IA AIV +R      TT  L+ +  + V   +     PAT
Sbjct: 4   DEDEIHEVIKNYGEERFSRQIARAIVAQRAVGSIDTTGKLAQIAAQNVRT-RERGQDPAT 62

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+A  L  A   LK+GG L V++FHSLEDR+VK+F    S     
Sbjct: 63  RTFQAIRIFINRELEEIAAVLPQAAGRLKSGGRLAVIAFHSLEDRIVKQFIKRYSTHAPL 122

Query: 272 VRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324
            +   +  ++      +SI  K +  + ++VA N R+RSA LR   RT     ED
Sbjct: 123 PKWAAVREADLPQPPLKSI-GKAIKASADEVAANPRARSAVLRIAERTDGIFSED 176


>gi|325915801|ref|ZP_08178101.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537984|gb|EGD09680.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 218

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 2/165 (1%)

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
             +D+  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI  +V    +++ HPAT
Sbjct: 19  PPRDIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI-ASVMPRGDSKTHPAT 77

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           RSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLEDR+VK+F A  +    +
Sbjct: 78  RSFQAIRIYINRELDDLQAGLDAALDALKPGGRLAVISFHSLEDRIVKQFMARYAKAPPS 137

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            R +  +       Q I+   +     ++  N R+RSA LR   +
Sbjct: 138 NRRLPEAQPFVPTLQLISG-AIKADDAELNINPRARSAVLRVAEK 181


>gi|145502845|ref|XP_001437400.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404550|emb|CAK70003.1| unnamed protein product [Paramecium tetraurelia]
          Length = 277

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 33/275 (12%)

Query: 41  LDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +D T G G +S+   +      ++ LD D   +    + +   ++ F      F + +  
Sbjct: 24  VDCTIGTGAHSQILLEHVKNLKILGLDIDERMIKNLPQNITAKQDNFIN----FYKHKTL 79

Query: 99  VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLT 157
              K  D +  DLG +  Q+     G S++K+  LDMR S S   +A+D++N  + ++L 
Sbjct: 80  SDTKNFDIIFADLGYNINQVYDESYGLSYKKNSLLDMRYSQSIQHTAADLLNNRSQQELR 139

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
            I    G   +A+++A  I+  RQ   F+    +  ++ +              ++FQAL
Sbjct: 140 EIFYHYGNIHKANQLAKIIIDNRQKEKFERANQVVDILNELSM------GDQIMKTFQAL 193

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLI-VVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           RI VN EI  L   L   +        LI +++FHSLE   V+KF      +        
Sbjct: 194 RIAVNQEINNLNLFLEKVQSQQIVDKQLILIITFHSLEAESVQKFIMKFKKQFSM----- 248

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
                         K + P+++++  N RSRSA L
Sbjct: 249 --------------KTIKPSEDEIKENPRSRSALL 269


>gi|294670598|ref|ZP_06735477.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307723|gb|EFE48966.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 146

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HV VLL + +  LN     V +D TFG GG+SR           ++  D+DP 
Sbjct: 1   MSSQEFQHVTVLLHEAVDGLNVVSDGVYVDGTFGRGGHSRLILSRLGEKGRLVVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   E +     + S+    FS  Q  +       +DG +FDLG+SS QID G RGFS
Sbjct: 61  AIAVAHE-LAARDGRVSVIHDGFSSFQTALDGLGIGQIDGTLFDLGISSPQIDDGSRGFS 119

Query: 127 FQKSGPLDMRMSCSGISASDVV 148
           F+   PLDMRM  +       +
Sbjct: 120 FRFDAPLDMRMDTTRGDICLRM 141


>gi|42559483|sp|Q8KTR3|RSMH_TREPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21702588|gb|AAM75985.1|AF481102_21 putative protein YabC [Candidatus Tremblaya princeps]
          Length = 295

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 35/309 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  V++++V+  L      + +DAT+G GG+S +          VIALD D        
Sbjct: 5   EHRSVMIQEVVDNLLTNTSGLYIDATYGTGGHSTALLGCLGPQGKVIALDCDQ-----SI 59

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   + +   A F +L  Y+      G DG+V DLG S+ Q+    RG S+   GP
Sbjct: 60  RFDHTSDPRAAAGHANFRELSGYLRCAEIYGADGIVADLGPSATQVHDAQRGLSYLHPGP 119

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           +DMR+  +  +  S  + +  +  L   L   G   +    A  I+   + A + TT D+
Sbjct: 120 IDMRVDPTLRVPLSGRLMRTGLGTLHSSLRCHGFSGRTKAAASRILHIVRKARYTTTLDV 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++          N   H A  +F+ALR   N+E + L   +R A   LK GG L++++F 
Sbjct: 180 AT----AACGLHNQGKHMAADAFRALRSMANSEPQCLRSLVRHAPAVLKPGGRLLILTFD 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S  +R+V+      S                     +  + V PTQ +V  N  +RS+ L
Sbjct: 236 SFGERMVRASIEHASC-------------------LVLMRTVAPTQREVDTNPGARSSLL 276

Query: 312 RAGMRTVER 320
               RT   
Sbjct: 277 HVLRRTGNP 285


>gi|254468248|ref|ZP_05081654.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
 gi|207087058|gb|EDZ64341.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
          Length = 212

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 87/212 (41%), Positives = 119/212 (56%), Gaps = 5/212 (2%)

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
            DLGVSS Q+D   RGFSF  +GPLDMRM  S    A +VVN+ N  DL +I    GEEK
Sbjct: 1   MDLGVSSPQLDDASRGFSFMHNGPLDMRMDQSQTLDACEVVNKYNESDLIKIFRDYGEEK 60

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227
            A RIA  I K R      +T +L+++++K+V ++ N+R HPAT+ FQALRI VN E+ E
Sbjct: 61  FAKRIASNICKIRNEKNITSTLELANIVKKSVPYT-NSRKHPATKVFQALRIEVNQELNE 119

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           L + L      LK  G L+ ++FHSLEDR+VK F    +              +    + 
Sbjct: 120 LKEALPLLFDVLKPQGRLLALTFHSLEDRIVKNFIKEITKLAPDTIPKFIPIRNTDHHEK 179

Query: 288 ITKKVV---VPTQEDVAFNRRSRSAKLRAGMR 316
               V+   + + E+V  N RSRSA+LR   +
Sbjct: 180 TKANVICNLIASTEEVEANPRSRSARLRGVEK 211


>gi|312867867|ref|ZP_07728072.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
 gi|311096622|gb|EFQ54861.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
          Length = 186

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 9/152 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFDQDQHAIENAKI 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  +  K   +  +  F  L++ + D     +DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPFIEKGMVTFIKDNFRHLKERLNDLGVTEIDGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGI 162
           PLDMRM+    ++A +VVN  +  DL RI   
Sbjct: 127 PLDMRMNQEASLTAYEVVNSYDYHDLVRIFSN 158


>gi|218461400|ref|ZP_03501491.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5]
          Length = 216

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/164 (48%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
                PF+TT+DL+ LI+        ++IHPATR FQALRIFVN+E+ ELAQ L +AE+A
Sbjct: 53  AVPKKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERA 112

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK GG L+VV+FHSLEDR+VKKFF+ R+GK    RH+  ++   A F  I K +V  ++ 
Sbjct: 113 LKPGGRLVVVTFHSLEDRIVKKFFSDRAGKATGSRHLPAAHERAATFTVIGKPMVSASEA 172

Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQFRG 341
           +   N R+RSAKLRAG+RT   +   D S    P L TL +  G
Sbjct: 173 EAEVNPRARSAKLRAGLRTDAATEPADMSLFGFPNLATLGKLGG 216


>gi|314923253|gb|EFS87084.1| MraW methylase family protein [Propionibacterium acnes HL001PA1]
 gi|314967020|gb|EFT11119.1| MraW methylase family protein [Propionibacterium acnes HL082PA2]
 gi|314980976|gb|EFT25070.1| MraW methylase family protein [Propionibacterium acnes HL110PA3]
 gi|315091635|gb|EFT63611.1| MraW methylase family protein [Propionibacterium acnes HL110PA4]
 gi|315093059|gb|EFT65035.1| MraW methylase family protein [Propionibacterium acnes HL060PA1]
 gi|315103167|gb|EFT75143.1| MraW methylase family protein [Propionibacterium acnes HL050PA2]
 gi|327327840|gb|EGE69616.1| MraW methylase family protein [Propionibacterium acnes HL103PA1]
          Length = 201

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 95/182 (52%), Gaps = 2/182 (1%)

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
             SG +A+ ++N+++  DL R+L   GEEK A RI  AIV  R   P +T+  L  +I +
Sbjct: 5   QSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITE 64

Query: 198 TVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+S+HSLED
Sbjct: 65  AIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVLSYHSLED 124

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK+ F             +   +  A F  +T+    P  ++VA N RS SA+LR   
Sbjct: 125 RPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIG 184

Query: 316 RT 317
           R 
Sbjct: 185 RV 186


>gi|256080680|ref|XP_002576606.1| S-adenosyl-methyltransferase mraW [Schistosoma mansoni]
 gi|238661881|emb|CAZ32843.1| S-adenosyl-methyltransferase mraW, putative [Schistosoma mansoni]
          Length = 260

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 96/270 (35%), Positives = 130/270 (48%), Gaps = 47/270 (17%)

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     +       FS L   +    +       ++ DLGVSS+Q+D   RGF F+ + 
Sbjct: 7   LLFYVSHKIYPLIGRFSDLPQLLNGYNLKYQSVDLILMDLGVSSLQLDIESRGFGFKHNA 66

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           PLDMRM+ S                   + I GEE+ + RIA+AIV  R      QTT+ 
Sbjct: 67  PLDMRMNQSPN-----------------VHIYGEERLSKRIANAIVDYRNDVGSIQTTKQ 109

Query: 191 LSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ LI   V  ++  R  IHPATR FQALRIF+N+E+ EL  GL  AE  LK GG L+V+
Sbjct: 110 LADLIHSVVPMNREGRSSIHPATRVFQALRIFINDELNELCIGLELAEFLLKPGGYLVVL 169

Query: 249 SFHSLEDRLVKKFF---------------ASRSGKVMAVRHMIPSNA--HPAVFQSITK- 290
           SFHSLEDRLVK  F                SR  + +  R     +     ++ Q  +K 
Sbjct: 170 SFHSLEDRLVKWSFHSDYKHLTLSKYLSQRSRHFQCINKRQEYEDDEISKESLGQIKSKW 229

Query: 291 ----KVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 + P+  ++  N RSRSAKLR   R
Sbjct: 230 NCVIGPITPSDSEIDSNPRSRSAKLRIAKR 259


>gi|207109224|ref|ZP_03243386.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 158

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 5/158 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++         +K + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165
                       S ++A  V+N   V  L +I    GE
Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGE 158


>gi|266624101|ref|ZP_06117036.1| MraW methylase family protein [Clostridium hathewayi DSM 13479]
 gi|288864070|gb|EFC96368.1| MraW methylase family protein [Clostridium hathewayi DSM 13479]
          Length = 150

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 2/149 (1%)

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229
            IA  IV+ R++   +TT +L+ +I++ V    +    HP+ ++FQA+RI +N E+E L 
Sbjct: 2   NIAKHIVRARETKRIETTGELTEIIKEAVPAKVRAVGGHPSKKTFQAIRIELNQELEVLN 61

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSI 288
             + +    L  GG L V++FHSLEDR+VK  F +                   +  + I
Sbjct: 62  NSIDTMIDLLNPGGRLAVITFHSLEDRIVKIRFRNNENPCTCPPDFPVCVCGKVSKGRVI 121

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           T+K VVP++E++  N+RS+S+KLR   R 
Sbjct: 122 TRKPVVPSEEEINGNKRSKSSKLRVFERI 150


>gi|226328338|ref|ZP_03803856.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198]
 gi|225203071|gb|EEG85425.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198]
          Length = 89

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTTNNFSHTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           A++   E       +FS+    F  L     
Sbjct: 61  AIAVANEI---DDARFSIVHGPFQILNSMSM 88


>gi|21410962|gb|AAH30997.1| METT5D1 protein [Homo sapiens]
          Length = 212

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 7/126 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 5   HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS +K G 
Sbjct: 65  SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGS 124

Query: 133 LDMRMS 138
           LDMRM 
Sbjct: 125 LDMRMD 130


>gi|119588673|gb|EAW68267.1| methyltransferase 5 domain containing 1, isoform CRA_b [Homo
           sapiens]
          Length = 279

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 8/131 (6%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS 138
           +K GPLDMRM 
Sbjct: 187 RKDGPLDMRMD 197


>gi|82595835|ref|XP_726012.1| s-adenosyl-methyltransferase Mraw [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481241|gb|EAA17577.1| s-adenosyl-methyltransferase mraw-related [Plasmodium yoelii
           yoelii]
          Length = 493

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 145/336 (43%), Gaps = 69/336 (20%)

Query: 35  APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90
              + ++DAT G GG++    K      VI++D+D  A+   +  +R Y  K +  +   
Sbjct: 174 KEDEYLIDATLGGGGHTLEMLKKFKNLKVISIDKDIEAIYYNKYKLRSYINKNRLKIIHG 233

Query: 91  TFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS------ 138
            +  +                 ++ DLGVS+ QI    RGFS++ +  LDM M+      
Sbjct: 234 NYKDILFLLNYYSLPIFNTYSAILVDLGVSTHQIKSSKRGFSYKYNDILDMNMNKYTEKE 293

Query: 139 ------------------------------------CSGISASDVVNQANVKDLTRILGI 162
                                                 G    +++N  N+K L  I+  
Sbjct: 294 YIENHINKELKQDTKIKELYMINESHDDDKNIYHKNYDGKKIHNILNTYNLKKLKYIIQK 353

Query: 163 LGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221
            GEEK+A +IA  I++ R+      TT DL ++I  T   +  +     +R FQ+ RI++
Sbjct: 354 FGEEKKAYKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYKSNNKVLSRVFQSFRIYI 413

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           NNE+  L   L S+ K LK GG+LI++S+HSLE++ +  F                    
Sbjct: 414 NNELLSLKNLLLSSHKILKQGGVLILISYHSLENKYIDLFVK----------------NK 457

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             ++  I  + ++PT ++V  N+ SRSAK+ A  + 
Sbjct: 458 TKLWNQINIQPIIPTNQEVKLNKSSRSAKMFAFKKI 493


>gi|289426915|ref|ZP_06428641.1| MraW methylase family protein [Propionibacterium acnes J165]
 gi|289160004|gb|EFD08182.1| MraW methylase family protein [Propionibacterium acnes J165]
          Length = 178

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQ 215
           R+L   GEEK A RI  AIV  R   P +T+  L  +I + +     +    HPA R+FQ
Sbjct: 2   RMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQ 61

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VN E+E L   L  A   L  GG + V+S+HSLEDR VK+ F             
Sbjct: 62  ALRIAVNREMETLPAVLPRALDRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLP 121

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +   +  A F  +T+    P  ++VA N RS SA+LR   R 
Sbjct: 122 MVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERV 163


>gi|205830884|sp|P0C7V9|ME15P_HUMAN RecName: Full=Putative methyltransferase-like protein 15P1;
           AltName: Full=Methyltransferase 5 domain-containing
           protein 2; AltName: Full=Methyltransferase-like protein
           15 pseudogene 1
 gi|119599129|gb|EAW78723.1| hCG2022166, isoform CRA_a [Homo sapiens]
          Length = 234

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 10/157 (6%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RG S 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSL 186

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILG 164
           +K GPLD+RM   G + S +      + LT  + +  
Sbjct: 187 RKDGPLDIRMD-GGRNISSLCYLYTER-LTTAIYLYC 221


>gi|118594403|ref|ZP_01551750.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium
           HTCC2181]
 gi|118440181|gb|EAV46808.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium
           HTCC2181]
          Length = 98

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL + I  LN  P    LD TFG GG+S+   K       ++A+D+D  
Sbjct: 1   MSKENFTHIPVLLNESIDGLNINPAGTYLDCTFGRGGHSKEILKRLNQNGRLVAIDQDLA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
           AV+ G++      ++F ++   FS + + V  
Sbjct: 61  AVAEGKKI---NDKRFDIYHGKFSSMDEIVKK 89


>gi|332836125|ref|XP_508346.3| PREDICTED: methyltransferase like 15 isoform 2 [Pan troglodytes]
          Length = 279

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 8/131 (6%)

Query: 16  TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           T+   H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +
Sbjct: 67  TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +     Y +Q       FSQ +  +          DGV+ DLG SSMQ+D  +RGFS 
Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186

Query: 128 QKSGPLDMRMS 138
           +K GPLDMRM 
Sbjct: 187 RKDGPLDMRMD 197


>gi|13924472|gb|AAK49020.1|AF195898_1 hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 136

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+ VL E+++A L   P    LD T G GG++    +      V  +DRD  A++   E
Sbjct: 6   KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ + ++F   ++ F + Q        DG++ DLGVSS+Q D GDRGFSF+   PLDMR
Sbjct: 66  RLKSFGDRFRAVRSNFGEYQPQGEK--FDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123

Query: 137 MSCSG 141
           M    
Sbjct: 124 MDQQQ 128


>gi|72025930|ref|XP_795360.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Strongylocentrotus purpuratus]
 gi|115727007|ref|XP_001191279.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Strongylocentrotus purpuratus]
          Length = 187

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +      H PV++E+V++   P   +V +D TFG GG++++  K      V  LDRDPFA
Sbjct: 54  VVDAHSLHKPVMVEEVLSFFAPQANQVYIDMTFGGGGHTQALMKCAPGITVYGLDRDPFA 113

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127
               Q+    +K Q       FS+++D +  + V     ++ D G SS Q D  +RGF+ 
Sbjct: 114 HQIAQKLSLHHKGQLCPLLGKFSEVKDLLSQREVSMVDGILIDAGCSSFQFDSPERGFAL 173

Query: 128 QKSGPLDMRMS 138
            + GPLDMRM 
Sbjct: 174 SQDGPLDMRMD 184


>gi|255024442|ref|ZP_05296428.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-208]
          Length = 126

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           +    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FHSLEDR+ K+ F
Sbjct: 9   RRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLEDRITKQLF 68

Query: 263 ASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              + +      +    + +   F+  T+K +VP++E++  N R+RSAKLR   + 
Sbjct: 69  QEATKRPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLRVIEKI 124


>gi|198431217|ref|XP_002121381.1| PREDICTED: similar to MGC84490 protein [Ciona intestinalis]
          Length = 226

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 7/136 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAV 71
                 H+PV+ E++++ LN   G VI+D TFGAGG+++   +      VIALDRD  A 
Sbjct: 30  SKETALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRDEKAF 89

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFS 126
              Q+  + +K +       FS+L   + D G+     + V+ D G SSMQ D  +RGFS
Sbjct: 90  EIAQDLSKKFKGRIIPLLGKFSELDKLLSDHGIVENSLNAVLLDAGCSSMQFDQPERGFS 149

Query: 127 FQKSGPLDMRMSCSGI 142
             + GPLDMRM  +  
Sbjct: 150 LVRDGPLDMRMDGNRW 165


>gi|291546845|emb|CBL19953.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. SR1/5]
          Length = 282

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ ++++++I  L   PG+V  DAT G GG++++  +      ++ A D DP  
Sbjct: 62  NTPAGMHISIMVKEIIDFLEIRPGQVGFDATLGYGGHTKAMLECLRGQGHMYATDVDPEE 121

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQID   RGFS
Sbjct: 122 SAKTRKRLAEQGFGEDILTIKLQNFCTIDEIAEEVGGFDFILADLGVSSMQIDNPKRGFS 181

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184
           F+  GPLD+R++   GISA+  ++  + ++L  +L    +E     IA AI  + R+   
Sbjct: 182 FKVDGPLDLRLNQETGISAAQRLDTISREELAGMLDENSDEPYCEEIAKAITDEIRRGNH 241

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
             TT  L  +I+KT+ F          + 
Sbjct: 242 IDTTTKLREVIEKTLSFLPEKERKDTVKK 270


>gi|301102540|ref|XP_002900357.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like
           protein [Phytophthora infestans T30-4]
 gi|262102098|gb|EEY60150.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like
           protein [Phytophthora infestans T30-4]
          Length = 221

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           H+PVLL++ +  L+     V      +D T G GG+SR+  +  S   ++ +D DP  +S
Sbjct: 19  HIPVLLQETVTALSRNVSDVSKPLYFVDGTAGFGGHSRAILQRFSDARLLCIDCDPEVLS 78

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q  + ++  + S    +++ L  +         VDG++ DLG +S   D   RGFS  
Sbjct: 79  IAQANLSEFHGRVSFQNGSYADLAKHLEAARFPDEVDGILVDLGANSFHFDAARRGFSVL 138

Query: 129 KSGPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
             GPLDMR +    S    +D VN  +   LT+I    GEE+ A   A AIV+ R+ 
Sbjct: 139 NDGPLDMRFNQLDASLSTAADAVNSLSEVQLTKIFRDYGEERLAKEFAKAIVREREE 195


>gi|167932993|ref|ZP_02520080.1| S-adenosyl-methyltransferase MraW [candidate division TM7
           single-cell isolate TM7b]
          Length = 242

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 93/256 (36%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQI 118
           +  +DRD  A++   E  R      +L  A F           +  D ++ DLGVSS Q+
Sbjct: 2   LFLVDRDENAIA---ELGRFSALGATLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQL 58

Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D GDRGFSF   GPLDMRM      SA+D+VN    + L  IL   GEE+     A  I 
Sbjct: 59  DNGDRGFSFMYDGPLDMRMDQRQKFSAADIVNSYPKQKLIEILVRYGEER--LSFAKRIA 116

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                    T     + +   ++     +IHPATR+FQALRI VN E+ ++   L    +
Sbjct: 117 DEIYKRRPFTKTSELAKMIVEIHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQ 176

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-VPT 296
            L +GG + ++SFHSLEDRLVK+FF   SG            +  +  + + KK +   T
Sbjct: 177 LLNSGGRVGIISFHSLEDRLVKRFFKDNSGL-----------SFESELELLNKKPLDGAT 225

Query: 297 QEDVAFNRRSRSAKLR 312
            +  A+N RSRSAKLR
Sbjct: 226 YD--AYNPRSRSAKLR 239


>gi|148228894|ref|NP_001085383.1| methyltransferase like 15 [Xenopus laevis]
 gi|49258062|gb|AAH71163.1| MGC84490 protein [Xenopus laevis]
          Length = 191

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 7/130 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HVPV++ +VI  L P  G+ ILD TFGAGG++ S  +  S   ++ALDRDP A +  Q+ 
Sbjct: 45  HVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILRQASNIKILALDRDPAAFAIAQQL 104

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y          FS+ +D +         +DGV+ D G SSMQ D  DRGFS  K GP
Sbjct: 105 AHGYGPNIQPLLGRFSEAEDLLKSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSKDGP 164

Query: 133 LDMRMSCSGI 142
           LDMRM     
Sbjct: 165 LDMRMDGDRC 174


>gi|295115795|emb|CBL36642.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [butyrate-producing
           bacterium SM4/1]
          Length = 299

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 8/181 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+V LDAT G GG++R   K      ++  LD DP      
Sbjct: 84  GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143

Query: 75  QETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D     +  ++    F+ +     +    D ++ DLGVSSMQID  +RGF+++  
Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLD+RM    G +A++ +   + ++   +L    +E  A  I+H +  R ++       
Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLETGRKDRYH 263

Query: 190 D 190
            
Sbjct: 264 H 264


>gi|323219910|gb|EGA04388.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 159

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222
            GEE+ A RIA AIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN
Sbjct: 1   FGEERFAKRIARAIVERNREQPMTRTKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVN 59

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282
           +E+EE+ Q L+S+   L  GG L ++SFHSLEDR+VK+F   +S        +  + A  
Sbjct: 60  SELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQL 119

Query: 283 AVF---QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
                 +      ++P +++VA N R+RS+ LR   RT  
Sbjct: 120 KKLGGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA 159


>gi|210610097|ref|ZP_03288259.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787]
 gi|210152609|gb|EEA83615.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787]
          Length = 265

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 14/216 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           G H+ + +++++      PG+  LDAT G GG++    K      ++ ALD DP      
Sbjct: 50  GMHISICVKEILDFFQIEPGQKGLDATLGYGGHTLEMLKCLKGEGHLYALDIDPIESVKT 109

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +++     E  S+    F+ +   V +    D ++ DLGVSSMQID  DRGF+++  
Sbjct: 110 KERLKNLGYGEEMLSIRHLNFADIDQVVEEAGPFDFILADLGVSSMQIDNPDRGFTYKSE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           G LD+R++   G SA++ +      +L  +L    +E  A+ IA  ++K+ RQ     TT
Sbjct: 170 GSLDLRLNPEKGESAAERLKNVTEDELEGMLVENSDEPYAAEIAQQVMKKLRQGEMIDTT 229

Query: 189 QDLSSLIQKTVYFSKNNR-----IHPATRSFQALRI 219
             L   I++ + F               R+FQALRI
Sbjct: 230 TKLYETIEEALSFIPEKERKEAVKKSCQRTFQALRI 265


>gi|317473098|ref|ZP_07932397.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899436|gb|EFV21451.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 260

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
               G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD D   
Sbjct: 72  STPAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIE 131

Query: 71  VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
           +   ++ +       E  ++ Q  F+ +     +    D V+ DLGVSSMQID  DRGFS
Sbjct: 132 LEKTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFS 191

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  GPLD+R++   G+SA++ +     ++L  +L    +E  A  IA A+V + +    
Sbjct: 192 YKTEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGQP 251

Query: 186 Q 186
            
Sbjct: 252 S 252


>gi|260889238|ref|ZP_05900501.1| MraW methylase family protein [Leptotrichia hofstadii F0254]
 gi|260860649|gb|EEX75149.1| MraW methylase family protein [Leptotrichia hofstadii F0254]
          Length = 129

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           K+ + HPA R+FQA+RIFVN E+E L++ L  A K L   G L+V++FHSLEDR+VK+ F
Sbjct: 13  KSMKRHPAKRTFQAIRIFVNKELEVLSETLDKAVKLLNKNGRLLVITFHSLEDRIVKEKF 72

Query: 263 ASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                     +   I      ++ + ITKK ++  + ++  N R+ SAKLR   R+ 
Sbjct: 73  REYEDPCTCPKDIPICVCNKKSLGKIITKKPIIAKKIELEENNRAHSAKLRIFERSE 129


>gi|46203082|ref|ZP_00052107.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 5/140 (3%)

Query: 42  DATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY- 98
           D TFGAGGY+R+         VIA+DRDP A+  G + +     +  L Q  F  L    
Sbjct: 2   DGTFGAGGYTRALLDAAPEAQVIAIDRDPTAIRAGADLVAAANGRLRLIQGRFGDLDTLL 61

Query: 99  --VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDL 156
               +   D VV D+GVSSMQ+D   RGFSF++ GPLDMRM   G +A+D+VN+     L
Sbjct: 62  AEQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPTAADLVNETEEGML 121

Query: 157 TRILGILGEEKQASRIAHAI 176
             IL   GEE+++  +A AI
Sbjct: 122 ADILYHFGEERRSRAVARAI 141


>gi|225389940|ref|ZP_03759664.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme
           DSM 15981]
 gi|225043994|gb|EEG54240.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme
           DSM 15981]
          Length = 111

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H  VLL + +  LN  PG   +D T G GG++    K      +I +D+D  A
Sbjct: 1   MEELKFGHTSVLLYETVGSLNIIPGGCYVDGTLGGGGHALEVLKRLGHGRLIGIDQDEDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           +    + ++ + ++ ++ +  +  ++  +     + VDG+  DLGVSS Q+
Sbjct: 61  IRAAGQRLKAFADKVTIVRDNYRNIRSVLEQLSVEKVDGIYLDLGVSSYQL 111


>gi|153864731|ref|ZP_01997531.1| Bacterial methyltransferase [Beggiatoa sp. SS]
 gi|152145773|gb|EDN72468.1| Bacterial methyltransferase [Beggiatoa sp. SS]
          Length = 95

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 9  MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
          MS        +H PVLL +VI  LN       +D TFG GG++R+     +    V+ALD
Sbjct: 1  MSKPESLNASEHQPVLLSEVIHALNIHADGTYIDCTFGRGGHTRAILNHLEASGRVLALD 60

Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFS 93
           DP AV  GQ  +    ++  +  + F+
Sbjct: 61 TDPQAVQAGQA-LSVSDDRLRIVHSAFA 87


>gi|258615770|ref|ZP_05713540.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO]
          Length = 82

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3  ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73 CGQETMRDY 81
            +  +  Y
Sbjct: 63 HAKLRLASY 71


>gi|167951237|ref|ZP_02538311.1| S-adenosyl-methyltransferase MraW [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 119

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            I  H PVLLE+ +  LN     + +D TFG GG+SR   K+      +I +D+DP A+ 
Sbjct: 3   EITTHRPVLLEEAVTALNITAEGIYIDGTFGRGGHSRRILKVLGERGRLIGIDKDPQAIV 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
            G+E +     +F++ Q +F+ +     ++ V
Sbjct: 63  HGREQL-GGDARFTIVQQSFAMIAQVGTERQV 93


>gi|325914208|ref|ZP_08176560.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539592|gb|EGD11236.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 146

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L    G   LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 11  VSQPPAAHVPVLYTQVLDGLQVTEGGAYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPE 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 71  AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129

Query: 130 SGPLDMRMSCS 140
            GPLDMRM   
Sbjct: 130 DGPLDMRMDPD 140


>gi|153844085|ref|ZP_01993621.1| MraW methylase family [Vibrio parahaemolyticus AQ3810]
 gi|149745262|gb|EDM56513.1| MraW methylase family [Vibrio parahaemolyticus AQ3810]
          Length = 148

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +  ++ P   T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A 
Sbjct: 4   RENEENEPMVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAA 63

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKV 292
           + L   G L V+SFHSLEDR+VK+F    S        +  + A              K 
Sbjct: 64  RILAPEGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKA 123

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           + P+++++  N RSRS+ LR   +
Sbjct: 124 IKPSKQEIDMNPRSRSSVLRIAEK 147


>gi|266624100|ref|ZP_06117035.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
 gi|288864078|gb|EFC96376.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
          Length = 167

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            + +H  VLL + I  LN  P  + +D T G GG++   C+       +I +D+D  A++
Sbjct: 1   MMFEHKSVLLYEAIDSLNVKPDGIYVDGTLGGGGHALEVCRRLGEYGRLIGIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +RDY+++ ++ ++ + ++Q  + D   +  DG+  DLGVSS Q+D  +RGF++++
Sbjct: 61  AASERLRDYEDRVTIVRSNYEEIQSVLKDLGIEKADGIYLDLGVSSYQLDTPERGFTYRE 120

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
                       +  +A+D+VN  +  DL RI+   GE+K A  IA
Sbjct: 121 EDAPLDMRMDQRNTRTAADIVNTYSEFDLYRIIRDYGEDKFAKNIA 166


>gi|320169060|gb|EFW45959.1| methyltransferase [Capsaspora owczarzaki ATCC 30864]
          Length = 642

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 20/197 (10%)

Query: 30  ALLNP-APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR----DY 81
           + L P  P  ++LDATFGAGG+S +  +     + + A+DRDP A+   ++  +     +
Sbjct: 216 SSLAPTRPPLILLDATFGAGGHSAALLRHAPPNTTLFAIDRDPDAIQRAEQLGQTNSLFH 275

Query: 82  KEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             +F   Q +FSQ++  V D+G+      G++ D+G  S Q+D   RGFSF   GPLDMR
Sbjct: 276 SSRFRPLQGSFSQMRQLVADQGIQPGSVDGILMDIGFCSTQVDDATRGFSFLCDGPLDMR 335

Query: 137 MSCSG-------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           M            +A+ V+     ++LT IL + GE  +A  IA AIV+ R++ P Q+T 
Sbjct: 336 MGAGTAFELAAIPTAATVLATLRCEELTHILRLYGELPKARAIADAIVRTRKTTPIQSTL 395

Query: 190 DLSSLIQKTVYFSKNNR 206
            L+ + ++ V+     +
Sbjct: 396 QLADIARRAVFSEAEYK 412



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 46/166 (27%)

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
              F       PA + FQALR+FVN+EI EL  GL  A   L+ GG L V++F   E   
Sbjct: 476 AFRFQGRKVKDPARQVFQALRVFVNDEISELRAGLGQAIALLRPGGRLAVITFQGAETTA 535

Query: 258 VKKFFAS-----------------------RSGKVMAVRHM----------------IPS 278
           +++F  S                       RS      RH+                + S
Sbjct: 536 LRRFLQSPTAILAADSVRSLDEDAPAASNARSADSSRPRHISLNDRFLAQKLQEFEQMQS 595

Query: 279 NAHPAVF-------QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           N  P  F        ++  K + P++ ++  N R+RSAKL    R+
Sbjct: 596 NNDPTHFPTSRALPLTVLHKAIGPSEHEIHRNPRARSAKLHVFERS 641


>gi|330938026|gb|EGH41806.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 76

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 6  THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65

Query: 76 ETMRDYKEQF 85
              +     
Sbjct: 66 ALAAEAGRFV 75


>gi|258539487|ref|YP_003173986.1| methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257151163|emb|CAR90135.1| Methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 115

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
            + FQA+RI VN+E+  L   L  A K +  GG + V++F SLEDRLVK  F   S    
Sbjct: 6   KKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQD 65

Query: 271 AVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
             R +     A    +Q + +K ++P+  ++A N R+ SAKLR   +   
Sbjct: 66  VPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAHSAKLRVIEKIRN 115


>gi|289426838|ref|ZP_06428564.1| MraW methylase family protein [Propionibacterium acnes J165]
 gi|289159927|gb|EFD08105.1| MraW methylase family protein [Propionibacterium acnes J165]
          Length = 165

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 9/153 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 1   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D     VD V+ DLG+SS QID 
Sbjct: 61  IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 120

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152
            +RGFS+    PLDMRM   SG +A+ ++N+++
Sbjct: 121 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESD 153


>gi|210610079|ref|ZP_03288258.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787]
 gi|210152690|gb|EEA83696.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787]
          Length = 211

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 21/221 (9%)

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161
             D ++ DLGVSSMQID  DRGF+++  G LD+R++   G SA++ +      +L  +L 
Sbjct: 4   PFDFILADLGVSSMQIDNPDRGFTYKSEGSLDLRLNPEKGESAAERLKNVTEDELEGMLV 63

Query: 162 ILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQ 215
              +E  A+ IA  ++K+ RQ     TT  L   I++ + F               R+FQ
Sbjct: 64  ENSDEPYAAEIAQQVMKKLRQGEMIDTTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQ 123

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VN+E E L   +     ALK+GG + +++FHS EDR+VKK F       +     
Sbjct: 124 ALRIDVNSEFEVLYALMEKLPSALKSGGKVAILTFHSGEDRIVKKAFKEWKKAGVYSE-- 181

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                       I   V+ P+ ++   N R++S K+R  ++
Sbjct: 182 ------------IANDVIRPSAKECVRNSRAKSTKMRWAIK 210


>gi|218508136|ref|ZP_03506014.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5]
          Length = 71

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ +    G+ VIALDRDP A++
Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIA 71


>gi|260889236|ref|ZP_05900499.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254]
 gi|260861296|gb|EEX75796.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254]
          Length = 78

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
          +  H PVL ++VI  +      V +D T G GG++    +     S V+A+D+D  A+  
Sbjct: 1  MEYHKPVLFDEVIDNIITKKDAVYVDCTLGGGGHTEGILENSSENSKVVAIDQDTEAIEF 60

Query: 74 GQETMRDY 81
           ++ ++ +
Sbjct: 61 AKKDLKIW 68


>gi|33866828|ref|NP_898387.1| hypothetical protein SYNW2298 [Synechococcus sp. WH 8102]
 gi|33639429|emb|CAE08813.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 215

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 9/182 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           +   +  HVPVL E V+      P    +++DAT G GG+S    +   G  +I LD+D 
Sbjct: 1   MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A +   E +  + ++ ++    F+   +Y P +    V+ DLGVSS Q+D  +RGFSF+
Sbjct: 61  TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117

Query: 129 KSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             GPLDMRM+  G   +A++++++    +L  ++   GEE+ + RIA  I          
Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177

Query: 187 TT 188
           + 
Sbjct: 178 SG 179


>gi|115727005|ref|XP_001191227.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
 gi|115891754|ref|XP_001186015.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
          Length = 194

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 14/192 (7%)

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            S  +A+DVVN  +   LT+IL   GEE  A +IA AI+  R +    ++    + +   
Sbjct: 2   PSQPTAADVVNSLDHVTLTQILRTYGEESNAKKIAQAIIDYRTNFNTFSSTSELATVIAC 61

Query: 199 VYFSKNNRI---------HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +  ++ +          H AT++FQALRIFVNNE+ ELA  + +A   ++ GG L V++
Sbjct: 62  CHTHRDAKSNRDKLGRHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLT 121

Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK+       + +  ++R        +     ++ + +  +    E++  N 
Sbjct: 122 FHSLEDRVVKRSLQGRHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNP 181

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLR  ++
Sbjct: 182 RARSAKLRTAIK 193


>gi|198413504|ref|XP_002123312.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Ciona intestinalis]
          Length = 190

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 9/184 (4%)

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
            I+A+DVVN  + ++LT I+   G+E+ A  I+ +I++ R  +       + S+      
Sbjct: 4   QITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENRPISTTLELARVVSMAFSQTS 63

Query: 201 FSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                     R H AT++F A+RIFVN+E+ E+  G++++EK L  GG + V++FHSLED
Sbjct: 64  DVFRVDSLGRRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFHSLED 123

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK---VVVPTQEDVAFNRRSRSAKLR 312
           R+VK+              M          +   K+   +++P+ E++  N RSRSAKLR
Sbjct: 124 RVVKRMLKQIEISKPFNVKM-GVGKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSAKLR 182

Query: 313 AGMR 316
              R
Sbjct: 183 IATR 186


>gi|225708994|gb|ACO10343.1| S-adenosyl-L-methionine-dependent methyltransferase METT5D1
           [Caligus rogercresseyi]
          Length = 366

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 123/299 (41%), Gaps = 32/299 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H PV  ++V+ +L P   ++ LD T+G GG++         + VIA DRD  ++     
Sbjct: 32  THTPVFFQEVLDILRPKKDQIFLDTTYGTGGHTNLILDHQPHARVIASDRDVSSIDLAMR 91

Query: 77  TMRDYK-EQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK- 129
             + Y     +   A FS+L  +     + +   DGV+ D G+S +Q    +RGFS +  
Sbjct: 92  MGQKYPSGSLNAIVARFSELPRHLIRLGLRENTCDGVIIDCGISDIQWGG-ERGFSLKGP 150

Query: 130 -SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA--IVKRRQSAPFQ 186
               +D        +AS+V+       L R L   G+ K  +++     +  R     F 
Sbjct: 151 LDLRMDPERYPETPTASEVLQSIRELPLLRPLKNYGKLKTNAKLVANAIVESRYMFNRFT 210

Query: 187 TTQDLSSLIQKTVY-----------------FSKNNRIHPATRSFQALRIFVNNEIEELA 229
           T ++L  ++   V                  + K        R+  ALR+FVN+EI +L 
Sbjct: 211 TAEELYEVLLDAVKFSEVRRSLFLTTEEASSWEKAFTESLLHRTLTALRMFVNDEINQLE 270

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            G+R A   LK GGLL+VV     E+  ++K         +      P       ++ +
Sbjct: 271 YGVRIASHYLKPGGLLLVVVRGEAEEIALRKTLTEIDFDPILSND--PEILRTLPWKLV 327


>gi|222831815|gb|EEE70292.1| predicted protein [Populus trichocarpa]
          Length = 81

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 9  MSSAIHH--TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63
          MS       T   H  VLL++ +  L   P    +D TFG GG+SR+          ++A
Sbjct: 1  MSPTESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVA 60

Query: 64 LDRDPFAVSCG 74
           D+DP A++  
Sbjct: 61 FDKDPAAIAEA 71


>gi|221502434|gb|EEE28161.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii VEG]
          Length = 1189

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV+  
Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607

Query: 75  QETMRD 80
           +  MR 
Sbjct: 608 RNRMRQ 613



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 144  ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYF 201
            A+ VVN      L  I    GEE+ A  IA  IV+ R+       T +    +     Y 
Sbjct: 927  AAQVVNSLPQAALAYIFKTFGEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYR 986

Query: 202  SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            +    I   +R FQALR++VN E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+ 
Sbjct: 987  NPQFVIKTCSRVFQALRMYVNQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQR 1046

Query: 262  FASRSGKVMA 271
                +     
Sbjct: 1047 LKQNNKNSDW 1056



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 278  SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +     ++  + KK + P +E+V  NRR+R+AK+R   +
Sbjct: 1141 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1179


>gi|221482188|gb|EEE20549.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii GT1]
          Length = 1191

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV+  
Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607

Query: 75  QETMRD 80
           +  MR 
Sbjct: 608 RNRMRQ 613



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 144  ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYF 201
            A+ VVN      L  I    GEE+ A  IA  IV+ R+       T +    +     Y 
Sbjct: 927  AAQVVNSLPQAALAYIFKTFGEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYR 986

Query: 202  SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            +    I   +R FQALR++VN E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+ 
Sbjct: 987  NPQFVIKTCSRVFQALRMYVNQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQR 1046

Query: 262  FASRSGKVMA 271
                +     
Sbjct: 1047 LKQNNKNSDW 1056


>gi|237843145|ref|XP_002370870.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii
           ME49]
 gi|211968534|gb|EEB03730.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii
           ME49]
          Length = 1062

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV+  
Sbjct: 421 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 480

Query: 75  QETMRD 80
           +  MR 
Sbjct: 481 RNRMRQ 486



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYF 201
           A+ VVN      L  I    GEE+ A  IA  IV+ R+       T +    +     Y 
Sbjct: 800 AAQVVNSLPQAALAYIFKTFGEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYR 859

Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +    I   +R FQALR++VN E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+ 
Sbjct: 860 NPQFVIKTCSRVFQALRMYVNQELESLDSLLTHAERLLKPGGRLLILSYHSLEDRLIKQR 919

Query: 262 FASRSGKVMA 271
               +     
Sbjct: 920 LKQNNKNSDW 929



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 278  SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +     ++  + KK + P +E+V  NRR+R+AK+R   +
Sbjct: 1014 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1052


>gi|330981225|gb|EGH79328.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 122

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
                +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+VK F 
Sbjct: 5   WEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFM 64

Query: 263 ASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              +        R++            I  K    +  +   N RSRSA +R   +
Sbjct: 65  RKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 120


>gi|325119263|emb|CBZ54817.1| putative S-adenosyl-methyltransferase mraW [Neospora caninum
           Liverpool]
          Length = 1044

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++++V+  L  A   V +D T G GG+  +  +     G  ++A+DRD  AV   
Sbjct: 402 EHVPVMVQEVLQYLITAKDGVYVDCTAGGGGHVEAIWRAVASEGGRLLAIDRDEEAVEAT 461

Query: 75  QETMRD 80
           +  +R 
Sbjct: 462 RNRLRQ 467



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
           A+ VVN      L  I  + GEE  A  IA  IV+ R++       +    I +     +
Sbjct: 782 AAQVVNGLPQAALASIFKLYGEEPLAELIAACIVRHRETRGTLRATEELREIVEGCCRYR 841

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
           N +        +  +++VN E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+   
Sbjct: 842 NPQ-FIIKTCSRVFQMYVNQELEVLDLLLTHAERLLKPGGRLVILSYHSLEDRLIKQRLK 900

Query: 264 SRSGKVMA 271
             +     
Sbjct: 901 RITQGSGW 908



 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 300  VAFNRRSRSAKLRAGMR 316
            V  NRR+RSAK+R   +
Sbjct: 1016 VLRNRRARSAKMRVAAK 1032


>gi|312867849|ref|ZP_07728054.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
 gi|311096604|gb|EFQ54843.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
          Length = 84

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G + V++FHSLEDRL K+ F   S   +        +      + + +K ++P
Sbjct: 1   MDLLAIDGRISVITFHSLEDRLTKQLFKEVSTVEVPKGLPFIPDDLKPKMELVNRKPILP 60

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           + E++  N RS SAKLR   + 
Sbjct: 61  SDEELEDNNRSHSAKLRVARKI 82


>gi|156329544|ref|XP_001619047.1| hypothetical protein NEMVEDRAFT_v1g152542 [Nematostella vectensis]
 gi|156201404|gb|EDO26947.1| predicted protein [Nematostella vectensis]
          Length = 150

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 17/150 (11%)

Query: 40  ILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ--ETMRDYKEQFSLFQATFSQLQ 96
            +DATFGAGG++ +        V A+DRDP AV   Q   T  +YK Q    Q  FS L 
Sbjct: 1   FVDATFGAGGHTCAILNSAKCKVFAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKFSDLF 60

Query: 97  DYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS---------CSGI 142
           + + + G+       ++ D+G SSMQ D   RGFS  K GPLDMRM           S  
Sbjct: 61  ELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSRNSSF 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRI 172
           +A+DVVN  + ++L  +L   G E+ A   
Sbjct: 121 TAADVVNSISERELISVLRHYGGERDAGMY 150


>gi|145627902|ref|ZP_01783703.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
 gi|144979677|gb|EDJ89336.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
          Length = 82

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVP 295
            L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K + P
Sbjct: 1   MLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAIQP 60

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           +  ++  N RSRSA LR   R 
Sbjct: 61  SDAEIQANPRSRSAILRVAERI 82


>gi|299143951|ref|ZP_07037031.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518436|gb|EFI42175.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 83

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVV 294
              L  GG + V+SFHSLEDR+VK+ F       +   +  + +       + IT+K +V
Sbjct: 1   MDRLNPGGRIAVISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIV 60

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
            +++++  N R+ SAKLR   +
Sbjct: 61  ASEKELIENNRAHSAKLRVAEK 82


>gi|56808162|ref|ZP_00365944.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Streptococcus
           pyogenes M49 591]
          Length = 95

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ ++
Sbjct: 6   EYIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVS 65

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +K ++P+  ++  N+R+ SAKLR   + 
Sbjct: 66  RKPILPSHSELTANKRAHSAKLRVAKKI 93


>gi|225159221|ref|ZP_03725523.1| S-adenosylmethionine-dependent methyltransferase involved in cell
          envelope biogenesis-like protein [Opitutaceae bacterium
          TAV2]
 gi|224802168|gb|EEG20438.1| S-adenosylmethionine-dependent methyltransferase involved in cell
          envelope biogenesis-like protein [Opitutaceae bacterium
          TAV2]
          Length = 125

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
          H+ VLL+  + LL P  G   LD TFG GG++R+         V+ALDRD
Sbjct: 34 HISVLLQPTLELLAPRAGGRYLDCTFGGGGHTRALLNAAPDTRVVALDRD 83


>gi|85057933|ref|YP_456849.1| hypothetical protein AYWB_653 [Aster yellows witches'-broom
          phytoplasma AYWB]
 gi|84790038|gb|ABC65770.1| conserved hypothetical protein [Aster yellows witches'-broom
          phytoplasma AYWB]
          Length = 83

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
          ++     H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A
Sbjct: 1  MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60

Query: 71 VSCGQETMRDYKEQFSLFQATF 92
           +  ++T+  +     +  + F
Sbjct: 61 CTNAKKTLSPHLP-IEIIHSIF 81


>gi|163784407|ref|ZP_02179294.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880321|gb|EDP73938.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 115

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           + +H PVL ++V+            ILDAT G GG+S    K      +I LD+D +A+ 
Sbjct: 1   MIEHYPVLKDEVVKFFTLIESGKEYILDATVGGGGHSYLILKNFPNRKIIGLDKDDYALK 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQID 119
             +E ++++K ++ L ++ F  L   + +  +D    V+FD GVS  Q+ 
Sbjct: 61  RAEEKLKEFKGRYILIKSAFKDLDKVLENLNIDKLAGVLFDFGVSHFQLK 110


>gi|13537274|dbj|BAB40624.1| hypothetical protein [Vibrio natriegens]
 gi|13537277|dbj|BAB40626.1| hypothetical protein [Vibrio harveyi]
 gi|13537280|dbj|BAB40628.1| hypothetical protein [Vibrio harveyi]
          Length = 51

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
              H+ VLL + I  L   P  + +D TFG GG+SR+       
Sbjct: 3  ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGE 47


>gi|13537271|dbj|BAB40622.1| hypothetical protein [Vibrio alginolyticus]
          Length = 51

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
              H+ VLL + I  L   P  V +D TFG GG+SR+       
Sbjct: 3  ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGE 47


>gi|261885262|ref|ZP_06009301.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 111

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
            +FQA+RI VN E++EL   L   + +     +L ++SFHSLED++ K  F       + 
Sbjct: 1   MAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDKIAKSTFKEWEKSCIC 60

Query: 272 VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
              +       + ++ + +TKK + P+++++  N RS  AK+R  
Sbjct: 61  DNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRIF 105


>gi|330950233|gb|EGH50493.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7]
          Length = 187

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 2/176 (1%)

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQA 151
           S+ Q+      V G++ DLGVSS Q+D  +RGFSF   GPLDMRM    G+SA++ +  A
Sbjct: 10  SETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVSAAEFIATA 69

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
             +++ R+    GEE+ A R+A+A+V RR+  PF  T DL+ +++      +  + +PAT
Sbjct: 70  PAEEIARVFKEYGEERFAKRMANAVVARREVQPFDRTADLAEVLKVANPAWEKGK-NPAT 128

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           R+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+VK F    + 
Sbjct: 129 RAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFMRKLAK 184


>gi|70927460|ref|XP_736113.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56510372|emb|CAH87288.1| hypothetical protein PC302411.00.0 [Plasmodium chabaudi chabaudi]
          Length = 243

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 50/245 (20%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMR 79
           P+LL            + ++DAT G GG++    K  + +  I++D+D  A+   +  ++
Sbjct: 6   PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKYKLK 57

Query: 80  DY--KEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            Y    +  L    +  +                 ++ DLGVS+ Q+    RGFS++ + 
Sbjct: 58  SYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYKYNN 117

Query: 132 PLDMRMSCS-------------------------------GISASDVVNQANVKDLTRIL 160
            LDM M+                                 G    +++N  N+K L  I+
Sbjct: 118 ILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLKYII 177

Query: 161 GILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219
              GEEK+A +IA  I++ R+      TT DL ++I  T   +  +     +R FQA RI
Sbjct: 178 QKFGEEKKAFKIAKKIIEWRKQNKEIVTTFDLKNIILSTCKNNYKSNNKVLSRVFQAFRI 237

Query: 220 FVNNE 224
           +VNNE
Sbjct: 238 YVNNE 242


>gi|295099855|emb|CBK88944.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Eubacterium cylindroides
           T2-87]
          Length = 107

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 53/100 (53%)

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278
           + VN E+ +L   L+   K LK  G + V++FHSLEDR+VKK F   +      + +   
Sbjct: 1   MEVNQELPQLEVVLKEGLKRLKPHGRMCVITFHSLEDRIVKKIFKEVAVPKKVDKRLPSL 60

Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                 +Q + +K V+ +++++  N R+ SAKLR   R  
Sbjct: 61  GIENLEYQLVNRKPVLASKQELDTNYRAHSAKLRGIERNE 100


>gi|261330354|emb|CBH13338.1| S-adenosyl-methyltransferase mraW-like protein,putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 474

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 15/235 (6%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD T G+G ++ +  + G     V+ALD D  A+   ++ + ++  ++F  +    S+ 
Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRFRFYCCKMSEA 189

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D ++ D GVS  Q++  +RGF         LDMR     G+ A + +N  +
Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY------FSKN 204
              L   L + G  E  QA +++ AI +R+     +            +           
Sbjct: 250 QHTLVSSLLVYGLLEYGQAMKMSRAITRRKPFVDSREVLTCIEQAGDELPEGGWRSQGSR 309

Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
            +   + +   +LR  +NNE+ EL QG+ +A   L+  G L+V S    E+RLV+
Sbjct: 310 RKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364


>gi|254469046|ref|ZP_05082452.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
 gi|207087856|gb|EDZ65139.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
          Length = 96

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H P++  +V   L        LD TFG GG+S+      +    +IA+D+D  A++  + 
Sbjct: 6   HFPIMRYEVTKHLIIDKNGKYLDCTFGRGGHSKIILDSLEQKGELIAIDKDHEAINSAKS 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV 107
              +  E        F++        G   +
Sbjct: 66  IQDERFEIHHSSILNFAKSLKKKVLMGYLWI 96


>gi|225389939|ref|ZP_03759663.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme
           DSM 15981]
 gi|225044001|gb|EEG54247.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme
           DSM 15981]
          Length = 64

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VKK F       +             +  + IT+K ++P++E++  N RS+SAKLR 
Sbjct: 1   DRIVKKRFRESEHPCICPPDFPVCVCGRVSRGRVITRKPILPSEEELEVNSRSKSAKLRV 60

Query: 314 GMR 316
             R
Sbjct: 61  FER 63


>gi|169839617|ref|ZP_02872805.1| S-adenosyl-methyltransferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 67

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           +EDR+VK+ F          +   I      ++ + IT+K +V    ++  N R+ SAKL
Sbjct: 1   MEDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITRKPIVAKTSELEENNRAHSAKL 60

Query: 312 RAGMRTV 318
           R   R+ 
Sbjct: 61  RIFERSE 67


>gi|72392687|ref|XP_847144.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma brucei
           TREU927]
 gi|62176037|gb|AAX70159.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma brucei]
 gi|70803174|gb|AAZ13078.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 474

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 15/235 (6%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD T G+G ++ +  + G     V+ALD D  A+   ++ + ++  ++   +    S+ 
Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRLRFYCCKMSEA 189

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D ++ D GVS  Q++  +RGF         LDMR     G+ A + +N  +
Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY------FSKN 204
              L   L   G  E  QA +++ AI +R+     +            +           
Sbjct: 250 QHTLVSSLLAYGLLEYGQAMKMSRAITRRKPFVDSREVLTCIEQAGDELPEGGWRSQGSR 309

Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
            +   + +   +LR  +NNE+ EL QG+ +A   L+  G L+V S    E+RLV+
Sbjct: 310 RKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364


>gi|115691196|ref|XP_001203985.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
 gi|115735657|ref|XP_001187798.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
          Length = 140

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 5/114 (4%)

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASR 265
           H AT++FQALRIFVNNE+ ELA  + +A   ++ GG L V++FHSLEDR+VK+       
Sbjct: 26  HTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSLEDRVVKRSLQGRHV 85

Query: 266 SGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + +  ++R        +     ++ + +  +    E++  N R+RSAKLR  ++
Sbjct: 86  AERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARSAKLRTAIK 139


>gi|71412140|ref|XP_808269.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70872439|gb|EAN86418.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 464

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 18/268 (6%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G G ++ +  + G     V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     GI A   +N   
Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203
              L+  L   G      +      + R   PF +++D+   ++                
Sbjct: 240 QHALSGALSAYG-LLTPEQSMKMAREVRCRRPFTSSRDVIGCVEAAGDMLPEEVWSTQSS 298

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             +   + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++    
Sbjct: 299 RRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQSTVE 358

Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITK 290
           S     +     +         F   TK
Sbjct: 359 SHPHALLCYTEDVPMEEVCEHGFTRHTK 386


>gi|159470611|ref|XP_001693450.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282953|gb|EDP08704.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 74

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQE 298
            GG L V+SFHSLEDRLVK  FA  +G         P + H      +    K V+P++E
Sbjct: 3   PGGRLAVISFHSLEDRLVKHAFARAAG------RPTPEDEHRTRVAVLVGNQKPVLPSEE 56

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N R+RSAKLR   +
Sbjct: 57  ETARNPRARSAKLRVLQK 74


>gi|2463559|dbj|BAA22552.1| unnamed protein product [Staphylococcus aureus]
          Length = 65

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRL K+ F          R +     A+    + + +K +  T+ED+  N R+RSAKLR 
Sbjct: 1   DRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRV 60

Query: 314 GM 315
             
Sbjct: 61  AE 62


>gi|322827176|gb|EFZ31465.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 516

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 18/268 (6%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G G ++ +  + G     V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 172 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 231

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     GI A   +N   
Sbjct: 232 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGSQLGIGALAYLNTVP 291

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203
              L+  L   G      +      + R   PF +++D+   ++                
Sbjct: 292 QHALSGALSAYG-LLTPEQSMKMAREVRCRRPFTSSRDVIGCVEAAGDMLPEEVWSTQSS 350

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             +   + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++    
Sbjct: 351 RRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQSTVE 410

Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITK 290
           S     +     +         F   TK
Sbjct: 411 SHPHALLCYTEDVPMEEVCEHGFTRHTK 438


>gi|157869826|ref|XP_001683464.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major]
 gi|68126529|emb|CAJ04793.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major
           strain Friedlin]
          Length = 489

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 17/257 (6%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDMRM-SCSGISASDVVNQAN 152
           +    ++  D V+ D G SS Q++  +RGF         LDMR     G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSSTQLENPERGFLLNDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203
              L+  L    E     +        RQ  PF   Q +   +++               
Sbjct: 264 QHALSGALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEAVEEAGNELPEEGWGTQGS 322

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             +   +     +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+    +
Sbjct: 323 RRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTTIS 382

Query: 264 SRSGKVMAVRHMIPSNA 280
                +++    IP   
Sbjct: 383 QHPHALLSYSEAIPIED 399


>gi|317473099|ref|ZP_07932398.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA]
 gi|316899437|gb|EFV21452.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA]
          Length = 115

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 14/117 (11%)

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
           +  K        R+FQALRI VN+E E L + L      L  GG   +++FHS EDRLVK
Sbjct: 12  HEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAKGGRAAILTFHSGEDRLVK 71

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K F                     V+Q I+  V+ P+ E+   N R+RS K+R  ++
Sbjct: 72  KSFKRL--------------LREGVYQEISTDVIRPSAEECRMNSRARSTKMRWAIK 114


>gi|322491999|emb|CBZ27273.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 489

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 110/275 (40%), Gaps = 23/275 (8%)

Query: 28  VIALLNPAPGKV------ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
            +  L P   +       +LD TFG+G ++    + G   + V+A+D D  A    +E +
Sbjct: 126 ALDALVPLSKQKRLVSYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDLEATVSAREIV 185

Query: 79  RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDM 135
            ++  ++F  F    S+ +    ++  D V+ D G S  Q++  +RGF         LDM
Sbjct: 186 DEFGADRFRFFARPMSEAKAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDM 245

Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R     G+ A + +N      L+  L    E     +        RQ  PF   Q +   
Sbjct: 246 RYGPTHGLGALEYLNTVPQHALSSALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEA 304

Query: 195 IQKTVYFSK---------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +++                 +   +     +LR  VN+E  EL++ L++A   L+  G L
Sbjct: 305 VEEAGNELPEEGWGTQGSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRL 364

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +V S    E+RL+    +     +++    IP   
Sbjct: 365 VVFSRLPWEERLISTTVSQHPHALLSYSEAIPIED 399


>gi|71424845|ref|XP_812929.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70877764|gb|EAN91078.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 464

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 18/268 (6%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G G ++ +  + G     V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     GI A   +N   
Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203
              L+  L          +      + R+  PF +++D+   ++                
Sbjct: 240 QHALSGALSAYA-LLTPEQSMKMAREVRRRRPFTSSRDVIGCVEAAGDMLPEEVWSTQSS 298

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             +   + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++    
Sbjct: 299 RRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLVWEERLIQSTVE 358

Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITK 290
           S     +     +         F   TK
Sbjct: 359 SHPHALLCYTEDVPMEEVCEHGFTRHTK 386


>gi|322499261|emb|CBZ34334.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 489

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDMRM-SCSGISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY---------FSK 203
              L+  L    E     +        RQ  PF   Q +   +++               
Sbjct: 264 QHALSGALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEAVEEAGNELPEEGWGTQDS 322

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             +   +     +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+    +
Sbjct: 323 RRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTTIS 382

Query: 264 SRSGKVMAVRHMIPSNA 280
                +++    IP   
Sbjct: 383 QHPHALLSYSEAIPIED 399


>gi|146087428|ref|XP_001465817.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum
           JPCM5]
 gi|134069917|emb|CAM68246.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum
           JPCM5]
          Length = 489

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDMRM-SCSGISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY---------FSK 203
              L+  L    E     +        RQ  PF   Q +   +++               
Sbjct: 264 QHALSGALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEAVEEAGNELPEEGWGTQDS 322

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             +   +     +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+    +
Sbjct: 323 RRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTTIS 382

Query: 264 SRSGKVMAVRHMIPSNA 280
                +++    IP   
Sbjct: 383 QHPHALLSYSEAIPIED 399


>gi|289809859|ref|ZP_06540488.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 73

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRS 306
           FHSLEDR+VK+F   +S        +  + A        +      ++P +++VA N R+
Sbjct: 1   FHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRA 60

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   RT  
Sbjct: 61  RSSVLRIAERTNA 73


>gi|237732706|ref|ZP_04563187.1| predicted protein [Mollicutes bacterium D7]
 gi|229384222|gb|EEO34313.1| predicted protein [Coprobacillus sp. D7]
          Length = 117

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
              +G H+ +++++++  L+   G++ LD T G GG++    +      ++ ALD DP
Sbjct: 59  STPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHMYALDIDP 116


>gi|68065600|ref|XP_674783.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56493579|emb|CAH96215.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 220

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 17/181 (9%)

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQ 196
           +       D++N  N+K L  I+   GEEK+A +IA  I++ R+      TT DL ++I 
Sbjct: 56  NYDSKKIHDILNTYNLKKLKYIIQKFGEEKKAFKIAKKIIEWRKKNGEIITTFDLKNIIL 115

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T   +  +     +R FQ+ RI++N+E+  L   L S+ K LK GG+LIV+S+HSLE++
Sbjct: 116 STCKNNYKSNNKVLSRVFQSFRIYINSELLSLKNLLLSSHKILKQGGVLIVISYHSLENK 175

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +  F                      ++  I  + +VPT +++  N+ SRSAK+    +
Sbjct: 176 YIDLFVK----------------NKTKLWNQINIQPIVPTDQEIKLNKSSRSAKMFVFKK 219

Query: 317 T 317
            
Sbjct: 220 I 220


>gi|322505001|emb|CAM36637.2| S-adenosyl-methyltransferase mraW-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 491

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 113/275 (41%), Gaps = 23/275 (8%)

Query: 28  VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
           V+  L     +        LD TFG+G ++    + G   + V+A+D D  A    ++  
Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187

Query: 79  RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135
            ++  ++F  +    S+ +    ++  D V+ D G S  Q++  +RGF    +    LDM
Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R      + A + +N      L+  L    E     +        RQ  PF     +  +
Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASY-ELLTPQQSMKLARAIRQRRPFGGAHRVLEV 306

Query: 195 IQKT---------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +++          +      +   +     +LR  VN+E +EL++ L++A   L+A G L
Sbjct: 307 VEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEALQNALLLLRADGRL 366

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +V S    E++L+    +     +++   +IP + 
Sbjct: 367 VVFSRLLWEEKLISATISQHPHALLSYSEVIPIDE 401


>gi|154337952|ref|XP_001565202.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 491

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 113/275 (41%), Gaps = 23/275 (8%)

Query: 28  VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
           V+  L     +        LD TFG+G ++    + G   + V+A+D D  A    ++  
Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187

Query: 79  RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135
            ++  ++F  +    S+ +    ++  D V+ D G S  Q++  +RGF    +    LDM
Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R      + A + +N      L+  L    E     +        RQ  PF     +  +
Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASY-ELLTPQQSMKLARAIRQRRPFGGAHRVLEV 306

Query: 195 IQKT---------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +++          +      +   +     +LR  VN+E +EL++ L++A   L+A G L
Sbjct: 307 VEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEPLQNALLLLRADGRL 366

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +V S    E++L+    +     +++   +IP + 
Sbjct: 367 VVFSRLLWEEKLISATISQHPHALLSYSEVIPIDE 401


>gi|309807739|ref|ZP_07701673.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168999|gb|EFO71083.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 44

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++     + I++K +V T +++  N RS SAKLR   +
Sbjct: 5   PDSLKPTLKIISRKPIVATDKELEENNRSHSAKLRVAEK 43


>gi|2739245|emb|CAA05400.1| hypothetical protein [Campylobacter jejuni]
          Length = 44

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59
           H+PVLL +V  +         LD T G GG+S +  K   
Sbjct: 4  PHIPVLLNEVQKIFKNLKTGYFLDCTLGFGGHSEALLKNHP 44


>gi|255017463|ref|ZP_05289589.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           F2-515]
          Length = 33

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           T+K +VP++E++  N R+RSAKLR   + 
Sbjct: 3   TRKPIVPSEEELEQNNRARSAKLRVIEKI 31


>gi|309804772|ref|ZP_07698836.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|309809951|ref|ZP_07703799.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308165882|gb|EFO68101.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308169739|gb|EFO71784.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 44

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++     + I++K +V T +++  N RS SAKLR   +
Sbjct: 5   PDSLKPTLKIISRKPIVATNKELEENNRSHSAKLRVAEK 43


>gi|309806340|ref|ZP_07700353.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167324|gb|EFO69490.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
          Length = 44

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++     + I++K +V T +++  N RS SAKLR   +
Sbjct: 5   PDSLKPTLKIISRKPIVATNKELEANNRSHSAKLRVAEK 43


>gi|148828290|ref|YP_001293043.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG]
 gi|148719532|gb|ABR00660.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG]
          Length = 43

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            I  K + P+  ++  N RSRSA LR   R 
Sbjct: 13  RIIGKAIQPSDAEIQVNPRSRSAILRVAERI 43


>gi|330950234|gb|EGH50494.1| hypothetical protein PSYCIT7_02272 [Pseudomonas syringae Cit 7]
          Length = 41

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 8  TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGG 49
          TM+S        H+ VLLE+ +  L        LD TFG GG
Sbjct: 2  TMNSGFT-----HITVLLEEAVEALAVRADGCYLDGTFGRGG 38


>gi|33866827|ref|NP_898386.1| hypothetical protein SYNW2297 [Synechococcus sp. WH 8102]
 gi|33639428|emb|CAE08812.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 83

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +N+E+  L + L+ A   L+ GGL+ ++SFHSLEDR VK  F                  
Sbjct: 1   MNDELGVLDRLLQQAPDWLEPGGLVGIISFHSLEDRRVKTAF-----------------L 43

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                + IT+K VV T+E+   N RSRSAK R   +
Sbjct: 44  RDERLERITRKPVVATEEEEEANPRSRSAKWRLARK 79


>gi|307069557|ref|YP_003878034.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola
           CARI]
 gi|306482817|gb|ADM89688.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola
           CARI]
          Length = 285

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 30/302 (9%)

Query: 21  VPVLLEKV---IALLNPAPGKVILDATFGAGGY--SRSFCKMGSNVIALDRDPFAVSCGQ 75
            P+L+ ++   +  +      + +DAT G   +    +       ++A ++D    +  +
Sbjct: 7   FPILISEIFNILKNIKINKD-IFIDATMGMAKHLKKINKKIEIKKILAFEKDNLIFNRNK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             M+        F+  F      +  K ++ ++FDLG+S  QI     GFS++K+  LDM
Sbjct: 66  IKMKKIFIVNDNFKNIFKI-LKLLKIKKINFILFDLGISLFQIIN-KNGFSYKKNSLLDM 123

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R++      A  ++N    + + +I      +K   +I + I+  R+    + T DL ++
Sbjct: 124 RINNKLNKPAYKILNNYKKEKILKIFNYYRNKKYFFKIVNLIIYNRKKKEIKKTFDLINI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+K    +K N  +  ++ FQ +R ++N +   L   L++        G++I++SFHS+E
Sbjct: 184 IKKVTNKNKIN--NYISKIFQIIRNYINKDN--LKNILKNIILKYLYKGIIIIISFHSIE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           D ++K  F     K       I                 +P + ++  N +SRS+ +R  
Sbjct: 240 DNIIKNMFYKNKFKKKIKLLKI-----------------IPQKLEIFLNYKSRSSIMRII 282

Query: 315 MR 316
           ++
Sbjct: 283 LK 284


>gi|213022917|ref|ZP_03337364.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 65

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K+F   +S        +  + A        +      ++P +++VA N R+RS+ LR   
Sbjct: 2   KRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRARSSVLRIAE 61

Query: 316 RTVE 319
           RT  
Sbjct: 62  RTNA 65


>gi|213416741|ref|ZP_03349885.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 32

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATF 45
              H  VLL++ +  LN  P  + +D TF
Sbjct: 3  ENFKHTTVLLDEAVNGLNIRPDGIYIDGTF 32


>gi|291559257|emb|CBL38057.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [butyrate-producing
           bacterium SSC/2]
          Length = 180

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G   +DAT G GG +   C        V A D    A+   +E +  +K    L   
Sbjct: 13  IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 72

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +++YV +  V  ++F+LG 
Sbjct: 73  GHEHMKEYVKEMAVSCIMFNLGY 95


>gi|167767427|ref|ZP_02439480.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1]
 gi|167711402|gb|EDS21981.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1]
          Length = 184

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G   +DAT G GG +   C        V A D    A+   +E +  +K    L   
Sbjct: 17  IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +++YV +  V  ++F+LG 
Sbjct: 77  GHEHMKEYVKEMAVSCIMFNLGY 99


>gi|317496762|ref|ZP_07955092.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895774|gb|EFV17926.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 184

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G   +DAT G GG +   C        V A D    A+   +E +  +K    L   
Sbjct: 17  IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +++YV +  V  ++F+LG 
Sbjct: 77  GHEHMKEYVKEMAVSCIMFNLGY 99


>gi|255635058|gb|ACU17887.1| unknown [Glycine max]
          Length = 140

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59
             T   HVPV+L +V+ + + +     +D T GA G+S +  K   
Sbjct: 79  TDTKFSHVPVMLGEVLDVFSNSTLTSFVDCTLGAAGHSTASLKYFG 124


>gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 258

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQET 77
          I LL P PG+ ILD   G G G+ +R+    G++V ++DRDP  ++  +  
Sbjct: 32 IDLLAPQPGERILD--LGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARAN 80


>gi|23099763|ref|NP_693229.1| hypothetical protein OB2308 [Oceanobacillus iheyensis HTE831]
 gi|22777993|dbj|BAC14264.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 191

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H   LLE+ I+      G+V++DAT G G  +    +      +V A D    A+   ++
Sbjct: 16  HY--LLEESIS-----EGEVVIDATCGNGNDTLFLSRVVGKSGHVYAFDIQQQAIQNTKQ 68

Query: 77  TMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   +    +L   + + ++DYV    + G +F+LG 
Sbjct: 69  ALEKYHNNNVTLIHGSHALIEDYVQHDVIGGAIFNLGY 106


>gi|330950232|gb|EGH50492.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7]
          Length = 49

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 16/46 (34%)

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             R++            I  K    +  +   N RSRSA +R   +
Sbjct: 2   MPRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 47


>gi|257870816|ref|ZP_05650469.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2]
 gi|257804980|gb|EEV33802.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2]
          Length = 186

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 23/157 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++V+      PG+ ++DAT G  G+              V A D    AV+  +
Sbjct: 5   HT--LLQEVV-----KPGQTVVDATMGN-GHDTELLATLVGPEGKVYAFDIQEQAVTTTK 56

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +                L            V D    ++     + G+  +    +  
Sbjct: 57  ERLLAKGL-----------LPQVELIHQGHETVADYVPDAVHAAIFNLGYLPKSDKKIIT 105

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRI 172
               +  +   ++ +        ++   G E     +
Sbjct: 106 LPETTEQALQALIQRIVPCGRIILVCYYGHEGGPEEL 142


>gi|257437488|ref|ZP_05613243.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165]
 gi|257200056|gb|EEU98340.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165]
          Length = 285

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +DAT G GG +   C++   G  V+  D  P A++  ++ +        L   + + L  
Sbjct: 125 IDATCGNGGDTAFLCRLVGEGGRVLGFDIQPEAIASTRQNLARKGLAAELHCDSHANLLQ 184

Query: 98  YVPDKGVDGVVFDLGV 113
           YV    VD V+F+ G 
Sbjct: 185 YVQPGTVDAVMFNFGW 200


>gi|282889803|ref|ZP_06298342.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500377|gb|EFB42657.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 204

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSC-----GQETMRDYK 82
             PG  ++DAT G  G+                VI +D  P A++       +E   +  
Sbjct: 23  VNPGDTVIDATCGN-GHDTLILAKLVLDSSSGCVIGMDVQPQAIAATREKLAKELSANQM 81

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           E+  L  A  S +     +  V  +V++LG 
Sbjct: 82  ERLHLHCACHS-IFPIQTENSVQLIVYNLGY 111


>gi|13537283|dbj|BAB40630.1| hypothetical protein [Vibrio campbellii]
          Length = 29

 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILD 42
              H+ VLL + I  L   P  + +D
Sbjct: 3  ETFQHISVLLNESIDGLAIKPDGIYID 29


>gi|313884623|ref|ZP_07818381.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620133|gb|EFR31564.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 194

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 9  MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIAL 64
          M SA+H++       LL  +I      P    +DAT G  G+ +    +       V+A 
Sbjct: 1  MQSALHYSHQ-----LLTALIDRF---PKGTFVDATLGN-GHDTAFILQKPNFHGQVLAF 51

Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
          D    A++  Q+ +       S +Q       + 
Sbjct: 52 DIQDQALTNSQDRLNKLGLDPSRYQLIHDSHANL 85


>gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037800|gb|EEG48046.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
           10507]
          Length = 187

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
              PG + +DAT G G  ++  C+    G  V+A D    A+   +E +      E + L
Sbjct: 17  QIRPGDLCIDATMGNGKDTQVLCELTGKGGKVLAFDIQECALQATRERLRRAGVPENYEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           +  +   + +Y  +  V  +VF+LG 
Sbjct: 77  YCRSHVHMDEYAKEGSVSCIVFNLGY 102


>gi|330904805|gb|EGH35377.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 48

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 48 GGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
          GG+SR           ++  D+DP A++ GQ  +     +F + Q  F+
Sbjct: 1  GGHSRLILSQLGPDGRLLGFDKDPQAIATGQA-LAAEDGRFVIVQRIFA 48


>gi|260588799|ref|ZP_05854712.1| putative rRNA methylase [Blautia hansenii DSM 20583]
 gi|331084442|ref|ZP_08333545.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540882|gb|EEX21451.1| putative rRNA methylase [Blautia hansenii DSM 20583]
 gi|330401538|gb|EGG81122.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 188

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
           L   P  + +DAT G G  +   C++      V+A D    A+ C  + ++++    +  
Sbjct: 16  LQVNPNGLYIDATMGNGYDTLFLCELAGESGKVLAFDVQEKAIMCTTKLLKEHNVENRAK 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L+  +   + +Y     VDG+ F+ G 
Sbjct: 76  LYLDSHENMDEYAEAGSVDGIYFNFGY 102


>gi|314940365|ref|ZP_07847527.1| rRNA methylase family protein [Enterococcus faecium TX0133a04]
 gi|313640405|gb|EFS04985.1| rRNA methylase family protein [Enterococcus faecium TX0133a04]
          Length = 196

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 31/206 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +   +  E+ SLF      L + + ++                   + G+  +    +
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGI-----------FNLGYLPKSDKAI 110

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILG------EEKQASRIAHAIVKRRQSAPFQT 187
                 +  +  +++ +   +    ++   G      E          + +   +     
Sbjct: 111 ITMPETTRTAMEEILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYR 170

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRS 213
             +  +         K  +I  A   
Sbjct: 171 FINQKNQPPILYCIEKKRKIKNAKHK 196


>gi|317471246|ref|ZP_07930611.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA]
 gi|316901293|gb|EFV23242.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA]
          Length = 183

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
              G + +DAT G GG +   C +   VI  +    A+    + +        L   +  
Sbjct: 17  IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 76

Query: 94  QLQDYVPDKGVDGVVFDLGV 113
            +  Y     V  ++F+LG 
Sbjct: 77  NMDRYAEKGTVQAILFNLGY 96


>gi|167746441|ref|ZP_02418568.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662]
 gi|167653401|gb|EDR97530.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662]
          Length = 190

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
              G + +DAT G GG +   C +   VI  +    A+    + +        L   +  
Sbjct: 24  IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 83

Query: 94  QLQDYVPDKGVDGVVFDLGV 113
            +  Y     V  ++F+LG 
Sbjct: 84  NMDRYAEKGTVQAILFNLGY 103


>gi|326407897|gb|ADZ64968.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
          CV56]
          Length = 196

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +L+ +I         V++DAT G G  ++   ++G+NV A D    A++  ++ + D   
Sbjct: 11 MLKDII-----KTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGI 65

Query: 84 QFSLFQATFSQL 95
          +  +F+   S L
Sbjct: 66 KNQIFEKNLSNL 77


>gi|281492941|ref|YP_003354921.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
          KF147]
 gi|281376593|gb|ADA66079.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
          KF147]
          Length = 196

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +L+ +I         V++DAT G G  ++   ++G+NV A D    A++  ++ + D   
Sbjct: 11 MLKDII-----KTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGI 65

Query: 84 QFSLFQATFSQL 95
          +  +F+   S L
Sbjct: 66 KNQIFEKNLSNL 77


>gi|291546556|emb|CBL19664.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. SR1/5]
          Length = 188

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR--DYKEQFSLFQ 89
           PG + +DAT G G  + +           V+A D    A+   +E ++  +  E + L  
Sbjct: 20  PGDICIDATMGNGNDT-ALLSQLAGKRGRVLAFDIQKQALEHTKERLKRDNCPENYQLLL 78

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
            +   +  Y  ++ V  + F+LG 
Sbjct: 79  ESHENMDVYAEEETVSCITFNLGY 102


>gi|295101193|emb|CBK98738.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Faecalibacterium
           prausnitzii L2-6]
          Length = 285

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 41  LDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +DAT G GG +   C++      V+  D  P A++  +  +        L   + + L  
Sbjct: 125 IDATCGNGGDTAFLCRLAGPEGRVLGFDIQPEAITSTRARLEKQGLTAELICDSHANLLQ 184

Query: 98  YVPDKGVDGVVFDLGV 113
           YV     D V+F+ G 
Sbjct: 185 YVRSGTADIVMFNFGW 200


>gi|311069541|ref|YP_003974464.1| putative RNA methylase [Bacillus atrophaeus 1942]
 gi|310870058|gb|ADP33533.1| putative RNA methylase [Bacillus atrophaeus 1942]
          Length = 194

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 24 LLEKVI----ALL--NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSC 73
          +L+K++     LL      G +++DAT G  G+   F         +V A D    A++ 
Sbjct: 2  MLKKILPYSKELLQMAADKGSIVVDATMGN-GHDTLFLAKLVGENGHVYAFDIQESALAA 60

Query: 74 GQETM-RDYKEQFSLFQATFSQLQD 97
           +E +  +Y  + +LF  +  ++ +
Sbjct: 61 TRERLGEEYGPRVTLFHKSHDKIAE 85


>gi|15674247|ref|NP_268422.1| hypothetical protein L141634 [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12725336|gb|AAK06363.1|AE006455_9 hypothetical protein L141634 [Lactococcus lactis subsp. lactis
          Il1403]
          Length = 196

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +L+ +I         V++DAT G G  ++   ++G+NV A D    A++  ++ + D   
Sbjct: 11 MLKDII-----KTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGI 65

Query: 84 QFSLFQATFSQL 95
          +  +F+   S+L
Sbjct: 66 KNQIFEKNLSKL 77


>gi|229823229|ref|ZP_04449298.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271]
 gi|229787395|gb|EEP23509.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271]
          Length = 189

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIAL 64
           M  A+H++   H   LL  +I      P  V +D T G  G+ +            V+  
Sbjct: 1   MQRALHYS---HT--LLAALIQRF---PDGVYIDGTLGK-GHDTAFILSQPGFCGQVMGF 51

Query: 65  DRDPFAVSCGQETMRDYKEQFSLF--QATFSQLQDYVPD-KGVDGVVFDLGV 113
           D    A++  QE +     + S     A+  Q+   + +     G +++LG 
Sbjct: 52  DIQDQALAWTQERLAKLPNKESAQLLLASHDQIHKLLAEVPQFSGAIYNLGY 103


>gi|291543851|emb|CBL16960.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. 18P13]
          Length = 190

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG + +DAT G  G+  +          +V A D    A++     + +    ++ ++
Sbjct: 20  VKPGDLCIDATAGR-GHDTALLCGLVGETGHVTAFDIQSDAIASTNARLAELGYTDRATV 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
            Q + S + +Y     +  + F+ G 
Sbjct: 79  IQGSHSTMGEYAQPGTISCITFNFGW 104


>gi|257866928|ref|ZP_05646581.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873261|ref|ZP_05652914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10]
 gi|257800984|gb|EEV29914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807425|gb|EEV36247.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10]
          Length = 187

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 21/148 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H   LL++V+      PG+  +DAT G G  +     +      V A D    A+   ++
Sbjct: 5   HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + +              L            + ++    +     + G+  Q    +   
Sbjct: 58  RLAEK-----------ELLAQVQLIHQGHETLAEVVSGPVHAAIFNLGYLPQGDKAIITL 106

Query: 137 MSCSGISASDVVNQANVKDLTRILGILG 164
              +  +   ++ +   K    ++   G
Sbjct: 107 PDTTKTALEALLTRLAPKGRIILVCYYG 134


>gi|310658196|ref|YP_003935917.1| RNA methylase [Clostridium sticklandii DSM 519]
 gi|308824974|emb|CBH21012.1| putative RNA methylase (modular protein) [Clostridium sticklandii]
          Length = 331

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G  ++DAT G G  +    +       V A D D  AV   +E ++    Q      
Sbjct: 18  IKSGDKVVDATLGNGNDAEFLAQIVGEQGRVYAFDIDSDAVEACKERLQSKYLQIDFILD 77

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
           +   L +      +   +F+LG 
Sbjct: 78  SHENL-NIYVKDTISAAIFNLGY 99


>gi|229543460|ref|ZP_04432520.1| putative rRNA methylase [Bacillus coagulans 36D1]
 gi|229327880|gb|EEN93555.1| putative rRNA methylase [Bacillus coagulans 36D1]
          Length = 190

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-----E 83
               G   +DAT G  G+   F       G  V A D  P AV   +E +         E
Sbjct: 17  AVKSGGFAIDATAGN-GHDTVFLAKRVGEGGKVFAFDIQPEAVRRTKERLEKEGLVTRAE 75

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            F       S+         + G VF+LG 
Sbjct: 76  LFCTGHEHASECIPAALHGKISGAVFNLGY 105


>gi|295110324|emb|CBL24277.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus obeum A2-162]
          Length = 187

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
              PG + +DAT G G  +   C +     +V A D    A++  ++ +   D    ++L
Sbjct: 17  QVQPGDICIDATMGNGNDTLLLCSLCQETGHVYAFDIQEQALAHTRQKLQNADVPTNYTL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + +  YV    V  +VF+LG 
Sbjct: 77  LLESHANMDHYVQPDSVSCIVFNLGY 102


>gi|257877004|ref|ZP_05656657.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20]
 gi|257811170|gb|EEV39990.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20]
          Length = 187

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H   LL++V+      PG+  +DAT G G  +     +      V A D    A+   ++
Sbjct: 5   HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            + + +   Q  L       L +      V   +F+LG 
Sbjct: 58  RLAEKELLAQVQLIHQGHETLAEV-VSGPVHAAIFNLGY 95


>gi|226323861|ref|ZP_03799379.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758]
 gi|225207410|gb|EEG89764.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758]
          Length = 186

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+   LE+ I       G + +DAT G GG +   C+      NV A D    A++  +E
Sbjct: 11  HI---LEEYIE-----EGDICIDATAGNGGDTEFLCQKVGETGNVYAFDVQEMAIAHTRE 62

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  L Q    ++Q YV +     ++F+ G 
Sbjct: 63  RLEKANLSTRAKLIQDGHEKMQTYVKE-EAKVIIFNFGY 100


>gi|23015692|ref|ZP_00055461.1| COG0500: SAM-dependent methyltransferases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 176

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD-------PFAVSCGQETMRDYKEQ 84
           L P  G  +LD   G G +SR F   G  V ALDRD         A     +        
Sbjct: 20  LVPK-GGTVLDLACGGGRHSRLFLDRGHKVTALDRDVAQAQLAEGAELIAADLEDGSAWP 78

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
            +        + +Y+       ++  L    + +     
Sbjct: 79  LAGRHFDAVVVTNYLWRPLFPAILGSLNPGGVLLYETFA 117


>gi|302832722|ref|XP_002947925.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f.
           nagariensis]
 gi|300266727|gb|EFJ50913.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f.
           nagariensis]
          Length = 425

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-----KEQF 85
            PG   +DAT G  G+   F         +V   D    A+S  +E +  +     +   
Sbjct: 20  QPGDTAVDATCGN-GHDTLFLAQAVGPRGHVHGFDIQDAAISATRERVEAHLTASSRPTI 78

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +L     S L++         V F+LG 
Sbjct: 79  TLHHTCHSGLRELCGSGVARVVAFNLGY 106


>gi|194017839|ref|ZP_03056448.1| YtqB [Bacillus pumilus ATCC 7061]
 gi|194010491|gb|EDW20064.1| YtqB [Bacillus pumilus ATCC 7061]
          Length = 193

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 26  EKVIALLNPAPGKVILDATFGAG----------GYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           ++++       G +++DAT G G          G+          V A D    A+   +
Sbjct: 11  KELLER-ACQKGDIVIDATMGNGHDTLYLADLVGH-------DGQVFAFDVQEEAIQQTR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           + + +      L      +L  ++P      +  
Sbjct: 63  KRLGEGYPYVHLIHDGHEKLAQHLPRDVYGHISG 96


>gi|153812378|ref|ZP_01965046.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174]
 gi|149831540|gb|EDM86627.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174]
          Length = 187

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
              PG + +DAT G G  +    S C    +V A D    A+   ++ +   D  + ++L
Sbjct: 17  QVQPGDICIDATMGNGNDTLLLSSLCGKDGHVFAFDIQEEALINTRKRLMEADAPQNYTL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + ++ YV    V  + F+LG 
Sbjct: 77  LLESHTNIEHYVDPGTVSCITFNLGY 102


>gi|153854162|ref|ZP_01995470.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814]
 gi|149753211|gb|EDM63142.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814]
          Length = 190

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 36  PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLF--QA 90
            G   +DAT G G  +   C++      V+A D    A+   +E ++ + ++        
Sbjct: 23  EGGYYIDATMGKGNDTLFLCELAGEKGKVLAFDIQQEALDVTKELLKTHGKEMQAELILD 82

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +  Y   +  D + F+ G 
Sbjct: 83  GHEHMDRYAGKESADVICFNFGY 105


>gi|116492413|ref|YP_804148.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC
           25745]
 gi|116102563|gb|ABJ67706.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC
           25745]
          Length = 187

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +++      PG V++DAT G  G+   F          V + D    A+   +    
Sbjct: 12  LLTEIV-----QPGDVVIDATMGN-GHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFE 65

Query: 80  DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              +      L  A+  Q+  YV +  + G +F+LG 
Sbjct: 66  HQHQTLINVELIHASHDQIDHYVTE-PITGAIFNLGY 101


>gi|295103806|emb|CBL01350.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Faecalibacterium
           prausnitzii SL3/3]
          Length = 288

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94
           +DAT G GG +   C +      V+A D  P A+   +  +       +++SL   + + 
Sbjct: 125 VDATCGNGGDTAFLCNLTAPAGRVLAFDVQPEAIRSTRTRLEQANVPADRYSLVCGSHAD 184

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           L  YV     D V+F+ G 
Sbjct: 185 LLQYVQPGTADAVMFNFGW 203


>gi|125625315|ref|YP_001033798.1| hypothetical protein llmg_2562 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124494123|emb|CAL99124.1| conserved hypothetical protein [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|300072129|gb|ADJ61529.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 211

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
          +L+ +I +       V++DAT G G  +    ++G+ V A D    A+   ++ + +
Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLEN 62


>gi|116513225|ref|YP_812132.1| hypothetical protein LACR_2602 [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116108879|gb|ABJ74019.1| SAM-dependent methyltransferase [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 211

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
          +L+ +I +       V++DAT G G  +    ++G+ V A D    A+   ++ + +
Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLEN 62


>gi|159477717|ref|XP_001696955.1| rRNA methylase [Chlamydomonas reinhardtii]
 gi|158274867|gb|EDP00647.1| rRNA methylase [Chlamydomonas reinhardtii]
          Length = 293

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-----KEQF 85
            PG   +DAT G  G+   F         +VI  D    A +  +E +  +     + + 
Sbjct: 111 RPGDTAVDATMGN-GHDTLFLAQAVGPTGHVIGFDIQEAATASTRERLESHLSAEVRPRL 169

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           SL  A  S+LQ+         V F+LG 
Sbjct: 170 SLHTACHSRLQELAGSGRARVVAFNLGY 197


>gi|257880445|ref|ZP_05660098.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883258|ref|ZP_05662911.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257886333|ref|ZP_05665986.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257891525|ref|ZP_05671178.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894534|ref|ZP_05674187.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257814673|gb|EEV43431.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818916|gb|EEV46244.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257822189|gb|EEV49319.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257827885|gb|EEV54511.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830913|gb|EEV57520.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
          Length = 189

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 13  IHHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRD 67
           +      H    LL++++      PG  ++DAT G  G+   F         +V + D  
Sbjct: 1   MMLQTALHFSHTLLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQ 54

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113
             A+   +E +   +  E+ SLF      L + + ++      +F+LG 
Sbjct: 55  QQAIDATRERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 103


>gi|293563986|ref|ZP_06678393.1| methyltransferase [Enterococcus faecium E1162]
 gi|291604076|gb|EFF33603.1| methyltransferase [Enterococcus faecium E1162]
          Length = 189

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113
           E +   +  E+ SLF      L + + ++      +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|293553710|ref|ZP_06674333.1| methyltransferase [Enterococcus faecium E1039]
 gi|291602136|gb|EFF32365.1| methyltransferase [Enterococcus faecium E1039]
          Length = 173

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113
           E +   +  E+ SLF      L + + ++      +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|258614091|ref|ZP_05711861.1| hypothetical protein EfaeD_00112 [Enterococcus faecium DO]
          Length = 187

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113
           E +   +  E+ SLF      L + + ++      +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|69244085|ref|ZP_00602621.1| Putative rRNA methylase [Enterococcus faecium DO]
 gi|260562444|ref|ZP_05832954.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261206890|ref|ZP_05921580.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567067|ref|ZP_06447464.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293569441|ref|ZP_06680737.1| methyltransferase [Enterococcus faecium E1071]
 gi|294613891|ref|ZP_06693829.1| methyltransferase [Enterococcus faecium E1636]
 gi|294619127|ref|ZP_06698619.1| methyltransferase [Enterococcus faecium E1679]
 gi|294622187|ref|ZP_06701252.1| methyltransferase [Enterococcus faecium U0317]
 gi|314943338|ref|ZP_07850113.1| rRNA methylase family protein [Enterococcus faecium TX0133C]
 gi|314949262|ref|ZP_07852608.1| rRNA methylase family protein [Enterococcus faecium TX0082]
 gi|314953920|ref|ZP_07856778.1| rRNA methylase family protein [Enterococcus faecium TX0133A]
 gi|314993190|ref|ZP_07858571.1| rRNA methylase family protein [Enterococcus faecium TX0133B]
 gi|314997352|ref|ZP_07862309.1| rRNA methylase family protein [Enterococcus faecium TX0133a01]
 gi|68196542|gb|EAN10968.1| Putative rRNA methylase [Enterococcus faecium DO]
 gi|260073129|gb|EEW61474.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260078868|gb|EEW66569.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161146|gb|EFD09049.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291587861|gb|EFF19713.1| methyltransferase [Enterococcus faecium E1071]
 gi|291593256|gb|EFF24827.1| methyltransferase [Enterococcus faecium E1636]
 gi|291594613|gb|EFF25998.1| methyltransferase [Enterococcus faecium E1679]
 gi|291598284|gb|EFF29376.1| methyltransferase [Enterococcus faecium U0317]
 gi|313588566|gb|EFR67411.1| rRNA methylase family protein [Enterococcus faecium TX0133a01]
 gi|313592304|gb|EFR71149.1| rRNA methylase family protein [Enterococcus faecium TX0133B]
 gi|313594119|gb|EFR72964.1| rRNA methylase family protein [Enterococcus faecium TX0133A]
 gi|313597950|gb|EFR76795.1| rRNA methylase family protein [Enterococcus faecium TX0133C]
 gi|313644361|gb|EFS08941.1| rRNA methylase family protein [Enterococcus faecium TX0082]
          Length = 188

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113
           E +   +  E+ SLF      L + + ++      +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|149181473|ref|ZP_01859969.1| SAM-dependent methyltransferase, MraW methylase family protein
           [Bacillus sp. SG-1]
 gi|148850874|gb|EDL65028.1| SAM-dependent methyltransferase, MraW methylase family protein
           [Bacillus sp. SG-1]
          Length = 190

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-----E 83
              PG + +DAT G  G+   F          V   D    A+   +E ++ +       
Sbjct: 17  AVNPGDIAIDATLGN-GHDTLFLAQLVGENGRVYGFDIQEEALFNTRERLQTHNLQERVT 75

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            F     T   +   V    V G +F+LG 
Sbjct: 76  LFKQGHETVGNVVPPVHYGKVTGAIFNLGY 105


>gi|312868433|ref|ZP_07728633.1| putative rRNA methylase [Streptococcus parasanguinis F0405]
 gi|311096178|gb|EFQ54422.1| putative rRNA methylase [Streptococcus parasanguinis F0405]
          Length = 185

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKE 83
           LE+VI         V++DAT G  G+  +F       V A D    A+   QE +     
Sbjct: 12  LEEVIT-----KEDVVVDATMGN-GHDTAFLAQLAGQVYAFDIQEQALVNTQERLEKLGL 65

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           Q         Q  D   +     +     + S          +  ++          G  
Sbjct: 66  QHVQLILDGHQHVDQYVETLKAAIFNLGYLPSADKSVITLPVTTIEAMEKICARLEKGGR 125

Query: 144 ASDVVNQANV 153
            + ++   + 
Sbjct: 126 MAIMIYYGHE 135


>gi|319651929|ref|ZP_08006052.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2]
 gi|317396421|gb|EFV77136.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2]
          Length = 190

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMR 79
          LLEK ++     PG +++DAT G  G+   F          V   D    AV   +  + 
Sbjct: 13 LLEKAVS-----PGDIVIDATLGN-GHDTVFLADLVGHNGRVYGFDIQEEAVQNTKTRLA 66

Query: 80 DYK--EQFSLFQATFSQLQD 97
          D+   ++ +LF      + +
Sbjct: 67 DHDLSDRATLFHTGHEFILE 86


>gi|134298946|ref|YP_001112442.1| putative rRNA methylase [Desulfotomaculum reducens MI-1]
 gi|134051646|gb|ABO49617.1| putative rRNA methylase [Desulfotomaculum reducens MI-1]
          Length = 185

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-- 78
           L +++       G + +D T G  G+              V A D    A+   ++ +  
Sbjct: 10  LAEIL-----RNGDLAVDGTMGN-GHDTLLLAQLVGSQGKVYAFDIQEQAIDNTRQRLVS 63

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              + ++  L       ++ Y  +  +   +++LG 
Sbjct: 64  QNLFDQRVKLIHDGHQNIKHY-IEHPIRAAIYNLGY 98


>gi|157693437|ref|YP_001487899.1| rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|157682195|gb|ABV63339.1| possible rRNA methyltransferase [Bacillus pumilus SAFR-032]
          Length = 191

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY 81
           ++++       G +++DAT G  G+   +          V A D    A+   ++ + + 
Sbjct: 11  KELLER-ACQKGDIVIDATMGN-GHDTLYLADLVGPDGQVFAFDVQEEAIEQTRKRLGEG 68

Query: 82  KEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGV 113
                L      +L  +      + + G VF+LG 
Sbjct: 69  YPYVHLIHDGHEKLAHHLPRDVYEQISGAVFNLGY 103


>gi|268316762|ref|YP_003290481.1| putative rRNA methylase [Rhodothermus marinus DSM 4252]
 gi|262334296|gb|ACY48093.1| putative rRNA methylase [Rhodothermus marinus DSM 4252]
          Length = 187

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           L  +++A +   PG++ +DAT G  G+   F         +V   D    A++  +  + 
Sbjct: 2   LAHRIVASV-LQPGEMAVDATVGN-GHDTLFLARQVGPQGHVYGFDVQEEALARTRRRLE 59

Query: 80  DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +           +     ++         +  V+F+LG 
Sbjct: 60  EAGLHERVTLLRMGHEHMAKAVPVAWHGRIGAVMFNLGY 98


>gi|332687128|ref|YP_004456902.1| SAM-dependent methyltransferase, MraW methylase family
           [Melissococcus plutonius ATCC 35311]
 gi|332371137|dbj|BAK22093.1| SAM-dependent methyltransferase, MraW methylase family
           [Melissococcus plutonius ATCC 35311]
          Length = 187

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 13/126 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           LL ++I      PG  ++DAT G G  +    K+      V A D    A+   ++ + +
Sbjct: 12  LLNEII-----CPGDHVVDATMGNGNDTLFLAKLVGDKGKVYAFDIQKQALERTRQRLIE 66

Query: 81  -----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  E F     T  Q+                   S +        + Q    L +
Sbjct: 67  NQVIQCTELFQQGHETIEQVLPIETTLSAAIFNLGYLPKSDKEIVTLPETTIQAIEQLLI 126

Query: 136 RMSCSG 141
           R+   G
Sbjct: 127 RLKSKG 132


>gi|309389271|gb|ADO77151.1| rRNA methylase [Halanaerobium praevalens DSM 2228]
          Length = 190

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
           N   G +++DAT G G  ++      K    V A D    A+    + ++++   E+  L
Sbjct: 20  NIDEGDLVIDATAGNGYDTKFLAELVKKKGKVYAFDLQAKAIENTNKLLKEHNLLERVEL 79

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           FQ     L  Y  +K +  V+F+LG 
Sbjct: 80  FQTGHQNLDQY-LNKKIKAVIFNLGY 104


>gi|237746404|ref|ZP_04576884.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377755|gb|EEO27846.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 283

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           V+ LL P  G+ ILD   GAG ++    K G  V+ +D +P AV+  +E   D ++  + 
Sbjct: 59  VLELLAPKAGERILDLGCGAGVWAEEMMKRGCEVVGVDINPQAVAAARERGVDARQVNAE 118

Query: 88  FQATFSQLQDYVPDKGVDGV 107
                 +      +  +  +
Sbjct: 119 SMTFHDEFDAVFSNASLHWM 138


>gi|299823066|ref|ZP_07054952.1| rRNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816595|gb|EFI83833.1| rRNA methyltransferase [Listeria grayi DSM 20601]
          Length = 187

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              PG  ++D T G G  +    ++      V A D    A+   ++ + +       +L
Sbjct: 17  AIRPGGQVIDGTCGNGNDTVLLAELVGENGQVFAFDIQSQAIEATRQKLTEQNLLAPVTL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
            Q +  Q+ +      +   +F+LG 
Sbjct: 77  IQDSHDQISE-HVKTPIQAAIFNLGY 101


>gi|89099660|ref|ZP_01172534.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911]
 gi|89085603|gb|EAR64730.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911]
          Length = 190

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
             +PG +++DAT G  G+   +          V   D    A+   +  +  +   E+ +
Sbjct: 17  AVSPGDIVVDATLGN-GHDALYLANLVGPNGRVYGFDIQEQAIHNSRIRLSGHGMEERAT 75

Query: 87  LFQATFSQLQDYV---PDKGVDGVVFDLGV 113
           LF +   QL + +     K +   +F+LG 
Sbjct: 76  LFHSGHEQLLECIPPVHHKKIAAAIFNLGY 105


>gi|225023758|ref|ZP_03712950.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC
           23834]
 gi|224943640|gb|EEG24849.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC
           23834]
          Length = 220

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 36  PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
            G + +DAT G  G+   F       G  V A D  P A++  Q  ++  +E+  +   +
Sbjct: 45  EGGIAVDATAGN-GHDTLFLAQCVGSGGRVYAFDIQPQALAATQARLQAAREERQVRLIS 103

Query: 92  FSQLQ-DYVPDKGVDGVVFDLGV 113
            S     +  ++ V  +VF+ G 
Sbjct: 104 ASHADLTHYVNEPVHSIVFNCGY 126


>gi|325568219|ref|ZP_08144627.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755]
 gi|325158252|gb|EGC70404.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H   LL++V+      PG   +DAT G G  +     +      V A D    A+   ++
Sbjct: 10  HT--LLKEVV-----QPGHTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 62

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +  ++   Q  L       L D      V   +F+LG 
Sbjct: 63  RLTEKELLPQVQLIHQGHETLADV-VSGPVHAAIFNLGY 100


>gi|189426228|ref|YP_001953405.1| rRNA methylase [Geobacter lovleyi SZ]
 gi|189422487|gb|ACD96885.1| putative rRNA methylase [Geobacter lovleyi SZ]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 13  IHHTIGDHVPVLLEKV-IALLN----PAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
           +  T   H PVL   V ++ L        G  ++DAT G G  +    ++     +V A 
Sbjct: 1   MPSTKAPH-PVLRGPVPLSHLLLQRFIQSGSRVIDATCGNGKDTLLLAELVGETGHVWAF 59

Query: 65  DRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D    A+    + + +    ++ SL  A   +L +      + GVVF+LG 
Sbjct: 60  DIQQEALDRTAQRLAEQNLQQRVSLLHAGHERLLEL-VKPPLHGVVFNLGW 109


>gi|257897586|ref|ZP_05677239.1| rRNA methylase [Enterococcus faecium Com12]
 gi|257834151|gb|EEV60572.1| rRNA methylase [Enterococcus faecium Com12]
          Length = 181

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 13 IHHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRD 67
          +      H    LL++++      PG  ++DAT G  G+   F         +V + D  
Sbjct: 1  MMLQTALHFSHTLLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQ 54

Query: 68 PFAVSCGQETMRDYK 82
            A+   +E +  ++
Sbjct: 55 QQAIDATREKLEQHQ 69


>gi|293377844|ref|ZP_06624028.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
 gi|292643528|gb|EFF61654.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
          Length = 188

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
          H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76 ETMRDYK 82
          E +  ++
Sbjct: 62 EKLEQHQ 68


>gi|293571991|ref|ZP_06683004.1| SAM-dependent methyltransferase [Enterococcus faecium E980]
 gi|291607915|gb|EFF37224.1| SAM-dependent methyltransferase [Enterococcus faecium E980]
          Length = 188

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
          H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76 ETMRDYK 82
          E +  ++
Sbjct: 62 EKLEQHQ 68


>gi|257900323|ref|ZP_05679976.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257838235|gb|EEV63309.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
          H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 11 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62

Query: 76 ETMRDYK 82
          E +  ++
Sbjct: 63 EKLEQHQ 69


>gi|227550265|ref|ZP_03980314.1| rRNA methylase [Enterococcus faecium TX1330]
 gi|227180590|gb|EEI61562.1| rRNA methylase [Enterococcus faecium TX1330]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
          H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76 ETMRDYK 82
          E +  ++
Sbjct: 62 EKLEQHQ 68


>gi|257888992|ref|ZP_05668645.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257825055|gb|EEV51978.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 13 IHHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRD 67
          +      H    LL++++      PG  ++DAT G  G+   F         +V + D  
Sbjct: 1  MMLQTALHFSHTLLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQ 54

Query: 68 PFAVSCGQETMRDYK 82
            A+   +E +  ++
Sbjct: 55 QQAIDATREKLEQHQ 69


>gi|160943569|ref|ZP_02090802.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445248|gb|EDP22251.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii
           M21/2]
          Length = 328

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94
           +DAT G GG +   C +      V+A D  P A+   +  +       E++ L   + + 
Sbjct: 165 VDATCGNGGDTAFLCGLTAPAGRVLAFDVQPEAIRSTRARLEKANVPAERYELICGSHAD 224

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           L  YV     D V+F+ G 
Sbjct: 225 LLQYVQPGTADAVMFNFGW 243


>gi|297621034|ref|YP_003709171.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044]
 gi|297376335|gb|ADI38165.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETM-----RDYK 82
             PG +++DAT G  G+                + A D    A++  ++++     +   
Sbjct: 23  VKPGDIVIDATCGN-GHDTLVLAQLALTVESGKLYACDLQKDAINSTKQSLLEKLEKKIV 81

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           E+        S   D +    V    ++LG 
Sbjct: 82  ERIFFVHGCHSSFPDEIQPNSVRLAAYNLGY 112


>gi|327474550|gb|EGF19955.1| rRNA methylase [Streptococcus sanguinis SK408]
          Length = 183

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 22/144 (15%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+          ++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDTVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
               L  +    L  Y         +F+LG                    +  R   +  
Sbjct: 66  NNVQLILSGHETLDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
           +   V           I+   G E
Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135


>gi|239905436|ref|YP_002952175.1| hypothetical protein DMR_07980 [Desulfovibrio magneticus RS-1]
 gi|239795300|dbj|BAH74289.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 209

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 9   MSS--AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVI 62
           M++      T   H+   L + +      PG + +DAT G  G+  +           V 
Sbjct: 1   MAARITASLTFLQHI---LAEAV-----RPGDLAVDATVGN-GHDTALLARLVGPSGLVH 51

Query: 63  ALDRDPFAVSCGQETMRDYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             D    A++  +  +             L     +++           VVF+LG 
Sbjct: 52  GFDVQAEAIASAERLLAAAGLAERVRLHVLGHERLAEVLPEADHGRATAVVFNLGY 107


>gi|327462947|gb|EGF09268.1| rRNA methylase [Streptococcus sanguinis SK1]
          Length = 183

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 22/144 (15%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEADL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           +   L  +    +  Y         +F+LG                    +  R   +  
Sbjct: 66  DNVQLILSGHETMDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
           +   V           I+   G E
Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135


>gi|297528996|ref|YP_003670271.1| rRNA methylase [Geobacillus sp. C56-T3]
 gi|297252248|gb|ADI25694.1| putative rRNA methylase [Geobacillus sp. C56-T3]
          Length = 195

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G + +DAT G  G+ +    +      +V   D  P A++     + 
Sbjct: 13  LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66

Query: 80  DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           ++        F    +   +         + G VF+LG 
Sbjct: 67  EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105


>gi|261418138|ref|YP_003251820.1| rRNA methylase [Geobacillus sp. Y412MC61]
 gi|319767902|ref|YP_004133403.1| rRNA methylase [Geobacillus sp. Y412MC52]
 gi|261374595|gb|ACX77338.1| putative rRNA methylase [Geobacillus sp. Y412MC61]
 gi|317112768|gb|ADU95260.1| rRNA methylase [Geobacillus sp. Y412MC52]
          Length = 195

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G + +DAT G  G+ +    +      +V   D  P A++     + 
Sbjct: 13  LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66

Query: 80  DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           ++        F    +   +         + G VF+LG 
Sbjct: 67  EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105


>gi|81429048|ref|YP_396048.1| putative methyltransferase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610690|emb|CAI55741.1| Putative methyltransferase [Lactobacillus sakei subsp. sakei 23K]
          Length = 186

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 21/196 (10%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
            +   H   LL++        PG V++DAT G G  +    +      +V   D    A+
Sbjct: 6   PSSFAHF--LLDQ-----AIRPGDVVIDATVGHGDDTLFLAEKVADYGHVYGFDIQKEAL 58

Query: 72  SCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  Q+ +       +   + Q     +     D  V   +F LG  S +           
Sbjct: 59  ATCQKRLTTANLSQQVSLINQGHERIITALPADLKVQAAIFSLGSLSSETSQDVT----- 113

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
                +  +S      S +     +  +        EE+    +A       +    +  
Sbjct: 114 ---LPNTTISAYHQVLSRLNRGGLLLFIIDNHFFKSEEEIHYLVADLTRLNPERYAVRHF 170

Query: 189 QDLSSLIQKTVYFSKN 204
           Q ++  + + +   K 
Sbjct: 171 QGVNQDVGQLLTVIKK 186


>gi|153953679|ref|YP_001394444.1| rRNA methylase [Clostridium kluyveri DSM 555]
 gi|219854301|ref|YP_002471423.1| hypothetical protein CKR_0958 [Clostridium kluyveri NBRC 12016]
 gi|146346560|gb|EDK33096.1| Predicted rRNA methylase [Clostridium kluyveri DSM 555]
 gi|219568025|dbj|BAH06009.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 18/140 (12%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
               G + +DAT G G  +            V A D    A+   Q+ +      +   L
Sbjct: 20  KLKEGDIAVDATMGNGNDTVFLAEIVGQSGKVYAFDIQQDAIKNTQKKIAYKNLFKYVKL 79

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147
                  + +Y+ +  V  V+F+LG               +    +  R   + I+    
Sbjct: 80  INDGHENMDNYISE-KVKLVIFNLGY------------LPKGEHSITTRADTTLIALKKA 126

Query: 148 VNQANVKDLTRILGILGEEK 167
           +N  +   +  ++   G E+
Sbjct: 127 LNLIDKNGVVILVVYYGHEQ 146


>gi|226312973|ref|YP_002772867.1| hypothetical protein BBR47_33860 [Brevibacillus brevis NBRC 100599]
 gi|226095921|dbj|BAH44363.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 186

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 20/140 (14%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA 90
           G+ ++DAT G G  +  F          VIA D  P A+   +E +       +  +  A
Sbjct: 20  GETVVDATMGNGNDT-LFLAQLVQEEGKVIAFDIQPQAIEKTRERLEREGLANRVEMKLA 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV-----------SSMQIDCGDRGFSFQKSGPLDMRMSC 139
           +  ++     +     ++F+LG            +S  I     G    + G +   M  
Sbjct: 79  SHEEIDKL--EILAAAIMFNLGYLPGGDKEITTQASSTIQAIQSGLRVLRPGGIMTVMIY 136

Query: 140 SGISASDVVNQANVKDLTRI 159
            G  A +   +A       +
Sbjct: 137 WGHPAGETEKEAVEAFCHEL 156


>gi|126699666|ref|YP_001088563.1| hypothetical protein CD2049 [Clostridium difficile 630]
 gi|254975637|ref|ZP_05272109.1| hypothetical protein CdifQC_10019 [Clostridium difficile QCD-66c26]
 gi|255093024|ref|ZP_05322502.1| hypothetical protein CdifC_10279 [Clostridium difficile CIP 107932]
 gi|255101181|ref|ZP_05330158.1| hypothetical protein CdifQCD-6_10259 [Clostridium difficile
           QCD-63q42]
 gi|255307055|ref|ZP_05351226.1| hypothetical protein CdifA_10732 [Clostridium difficile ATCC 43255]
 gi|255314766|ref|ZP_05356349.1| hypothetical protein CdifQCD-7_10477 [Clostridium difficile
           QCD-76w55]
 gi|255517441|ref|ZP_05385117.1| hypothetical protein CdifQCD-_10066 [Clostridium difficile
           QCD-97b34]
 gi|255650551|ref|ZP_05397453.1| hypothetical protein CdifQCD_10241 [Clostridium difficile
           QCD-37x79]
 gi|255656020|ref|ZP_05401429.1| hypothetical protein CdifQCD-2_10044 [Clostridium difficile
           QCD-23m63]
 gi|260683649|ref|YP_003214934.1| hypothetical protein CD196_1913 [Clostridium difficile CD196]
 gi|260687309|ref|YP_003218443.1| hypothetical protein CDR20291_1956 [Clostridium difficile R20291]
 gi|296450551|ref|ZP_06892305.1| rRNA methylase [Clostridium difficile NAP08]
 gi|296879327|ref|ZP_06903322.1| rRNA methylase [Clostridium difficile NAP07]
 gi|306520499|ref|ZP_07406846.1| hypothetical protein CdifQ_11806 [Clostridium difficile QCD-32g58]
 gi|115251103|emb|CAJ68934.1| putative rRNA methylase [Clostridium difficile]
 gi|260209812|emb|CBA63659.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213326|emb|CBE04904.1| conserved hypothetical protein [Clostridium difficile R20291]
 gi|296260626|gb|EFH07467.1| rRNA methylase [Clostridium difficile NAP08]
 gi|296429870|gb|EFH15722.1| rRNA methylase [Clostridium difficile NAP07]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G +++DAT G G  +R   +       V A D    A+   ++ +      ++  L 
Sbjct: 22  INEGDIVIDATMGNGYDTRYLAEKVGEKGFVYAFDIQEEAIKSTRKKLEKEGYTDRVKLI 81

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                ++  Y+ +  V  V+F+LG 
Sbjct: 82  FDGHEKMNQYIKE-EVSCVLFNLGY 105


>gi|320547357|ref|ZP_08041648.1| rRNA methylase [Streptococcus equinus ATCC 9812]
 gi|320448055|gb|EFW88807.1| rRNA methylase [Streptococcus equinus ATCC 9812]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+       G V +DAT G G  +    +    V A D    A+   QE +      
Sbjct: 13  LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       Q  D    + +   +F+LG 
Sbjct: 68  NAQLILDGHQNLDKYVSEPIRAAIFNLGY 96


>gi|171780242|ref|ZP_02921146.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281590|gb|EDT47025.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+       G V +DAT G G  +    +    V A D    A+   QE +      
Sbjct: 13  LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       Q  D    + +   +F+LG 
Sbjct: 68  NAQLILDGHQNLDKYVSEPIRAAIFNLGY 96


>gi|296875985|ref|ZP_06900044.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433060|gb|EFH18848.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L +VI         V++DAT G  G+  +F  K+   V A D    A+   QE +     
Sbjct: 12  LAEVIT-----KEDVVVDATMGN-GHDTAFLAKLAGQVYAFDIQEQALVNTQERLEKLGL 65

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           Q         Q  D   +  +   +F+LG 
Sbjct: 66  QHVQLILDGHQHVDQYVE-TLKAAIFNLGY 94


>gi|295113991|emb|CBL32628.1| Predicted S-adenosylmethionine-dependent methyltransferase
          involved in cell envelope biogenesis [Enterococcus sp.
          7L76]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78
          LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ +
Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGSSGEVFAFDIQKEALINTEQKL 64


>gi|257418397|ref|ZP_05595391.1| SAM-dependent methyltransferase [Enterococcus faecalis T11]
 gi|257160225|gb|EEU90185.1| SAM-dependent methyltransferase [Enterococcus faecalis T11]
 gi|315148160|gb|EFT92176.1| rRNA methylase family protein [Enterococcus faecalis TX4244]
 gi|315166998|gb|EFU11015.1| rRNA methylase family protein [Enterococcus faecalis TX1341]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78
          LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ +
Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64


>gi|257415363|ref|ZP_05592357.1| SAM-dependent methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257157191|gb|EEU87151.1| SAM-dependent methyltransferase [Enterococcus faecalis ARO1/DG]
 gi|315170873|gb|EFU14890.1| rRNA methylase family protein [Enterococcus faecalis TX1342]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78
          LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ +
Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64


>gi|229546650|ref|ZP_04435375.1| rRNA methylase [Enterococcus faecalis TX1322]
 gi|256854344|ref|ZP_05559708.1| SAM-dependent methyltransferase [Enterococcus faecalis T8]
 gi|307276225|ref|ZP_07557354.1| rRNA methylase family protein [Enterococcus faecalis TX2134]
 gi|307296183|ref|ZP_07576012.1| rRNA methylase family protein [Enterococcus faecalis TX0411]
 gi|229308217|gb|EEN74204.1| rRNA methylase [Enterococcus faecalis TX1322]
 gi|256709904|gb|EEU24948.1| SAM-dependent methyltransferase [Enterococcus faecalis T8]
 gi|306496114|gb|EFM65695.1| rRNA methylase family protein [Enterococcus faecalis TX0411]
 gi|306507081|gb|EFM76222.1| rRNA methylase family protein [Enterococcus faecalis TX2134]
 gi|315029896|gb|EFT41828.1| rRNA methylase family protein [Enterococcus faecalis TX4000]
 gi|315159950|gb|EFU03967.1| rRNA methylase family protein [Enterococcus faecalis TX0312]
 gi|323479986|gb|ADX79425.1| rRNA methylase family protein [Enterococcus faecalis 62]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78
          LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ +
Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64


>gi|229548736|ref|ZP_04437461.1| rRNA methylase [Enterococcus faecalis ATCC 29200]
 gi|255971252|ref|ZP_05421838.1| SAM-dependent methyltransferase [Enterococcus faecalis T1]
 gi|255973871|ref|ZP_05424457.1| SAM-dependent methyltransferase [Enterococcus faecalis T2]
 gi|256617679|ref|ZP_05474525.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256761557|ref|ZP_05502137.1| SAM-dependent methyltransferase [Enterococcus faecalis T3]
 gi|256957340|ref|ZP_05561511.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5]
 gi|256964373|ref|ZP_05568544.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704]
 gi|257077664|ref|ZP_05572025.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1]
 gi|257081052|ref|ZP_05575413.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol]
 gi|257083713|ref|ZP_05578074.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1]
 gi|257086149|ref|ZP_05580510.1| SAM-dependent methyltransferase [Enterococcus faecalis D6]
 gi|257089221|ref|ZP_05583582.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188]
 gi|257421046|ref|ZP_05598036.1| SAM-dependent methyltransferase [Enterococcus faecalis X98]
 gi|294779821|ref|ZP_06745207.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|307270146|ref|ZP_07551463.1| rRNA methylase family protein [Enterococcus faecalis TX4248]
 gi|307271402|ref|ZP_07552677.1| rRNA methylase family protein [Enterococcus faecalis TX0855]
 gi|307284441|ref|ZP_07564604.1| rRNA methylase family protein [Enterococcus faecalis TX0860]
 gi|307289509|ref|ZP_07569455.1| rRNA methylase family protein [Enterococcus faecalis TX0109]
 gi|312901667|ref|ZP_07760937.1| rRNA methylase family protein [Enterococcus faecalis TX0470]
 gi|312904994|ref|ZP_07764129.1| rRNA methylase family protein [Enterococcus faecalis TX0635]
 gi|312951836|ref|ZP_07770726.1| rRNA methylase family protein [Enterococcus faecalis TX0102]
 gi|229306129|gb|EEN72125.1| rRNA methylase [Enterococcus faecalis ATCC 29200]
 gi|255962270|gb|EET94746.1| SAM-dependent methyltransferase [Enterococcus faecalis T1]
 gi|255966743|gb|EET97365.1| SAM-dependent methyltransferase [Enterococcus faecalis T2]
 gi|256597206|gb|EEU16382.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256682808|gb|EEU22503.1| SAM-dependent methyltransferase [Enterococcus faecalis T3]
 gi|256947836|gb|EEU64468.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5]
 gi|256954869|gb|EEU71501.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704]
 gi|256985694|gb|EEU72996.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1]
 gi|256989082|gb|EEU76384.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol]
 gi|256991743|gb|EEU79045.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1]
 gi|256994179|gb|EEU81481.1| SAM-dependent methyltransferase [Enterococcus faecalis D6]
 gi|256998033|gb|EEU84553.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188]
 gi|257162870|gb|EEU92830.1| SAM-dependent methyltransferase [Enterococcus faecalis X98]
 gi|294453095|gb|EFG21511.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|306499527|gb|EFM68898.1| rRNA methylase family protein [Enterococcus faecalis TX0109]
 gi|306503249|gb|EFM72502.1| rRNA methylase family protein [Enterococcus faecalis TX0860]
 gi|306511934|gb|EFM80929.1| rRNA methylase family protein [Enterococcus faecalis TX0855]
 gi|306513515|gb|EFM82130.1| rRNA methylase family protein [Enterococcus faecalis TX4248]
 gi|310630187|gb|EFQ13470.1| rRNA methylase family protein [Enterococcus faecalis TX0102]
 gi|310631690|gb|EFQ14973.1| rRNA methylase family protein [Enterococcus faecalis TX0635]
 gi|311291278|gb|EFQ69834.1| rRNA methylase family protein [Enterococcus faecalis TX0470]
 gi|315027553|gb|EFT39485.1| rRNA methylase family protein [Enterococcus faecalis TX2137]
 gi|315031264|gb|EFT43196.1| rRNA methylase family protein [Enterococcus faecalis TX0017]
 gi|315035316|gb|EFT47248.1| rRNA methylase family protein [Enterococcus faecalis TX0027]
 gi|315153165|gb|EFT97181.1| rRNA methylase family protein [Enterococcus faecalis TX0031]
 gi|315154866|gb|EFT98882.1| rRNA methylase family protein [Enterococcus faecalis TX0043]
 gi|315164614|gb|EFU08631.1| rRNA methylase family protein [Enterococcus faecalis TX1302]
 gi|315578129|gb|EFU90320.1| rRNA methylase family protein [Enterococcus faecalis TX0630]
 gi|327534381|gb|AEA93215.1| rRNA methylase [Enterococcus faecalis OG1RF]
 gi|329577652|gb|EGG59082.1| putative rRNA methylase [Enterococcus faecalis TX1467]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78
          LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ +
Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64


>gi|29375384|ref|NP_814538.1| hypothetical protein EF0794 [Enterococcus faecalis V583]
 gi|227517764|ref|ZP_03947813.1| rRNA methylase [Enterococcus faecalis TX0104]
 gi|227554910|ref|ZP_03984957.1| rRNA methylase [Enterococcus faecalis HH22]
 gi|256959922|ref|ZP_05564093.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96]
 gi|293385211|ref|ZP_06631028.1| putative rRNA methylase [Enterococcus faecalis R712]
 gi|293388325|ref|ZP_06632838.1| putative rRNA methylase [Enterococcus faecalis S613]
 gi|300859754|ref|ZP_07105842.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11]
 gi|312907134|ref|ZP_07766126.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512]
 gi|312979287|ref|ZP_07790986.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516]
 gi|29342844|gb|AAO80608.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227074787|gb|EEI12750.1| rRNA methylase [Enterococcus faecalis TX0104]
 gi|227175966|gb|EEI56938.1| rRNA methylase [Enterococcus faecalis HH22]
 gi|256950418|gb|EEU67050.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96]
 gi|291077508|gb|EFE14872.1| putative rRNA methylase [Enterococcus faecalis R712]
 gi|291082293|gb|EFE19256.1| putative rRNA methylase [Enterococcus faecalis S613]
 gi|300850572|gb|EFK78321.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11]
 gi|310626845|gb|EFQ10128.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512]
 gi|311287945|gb|EFQ66501.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516]
 gi|315145295|gb|EFT89311.1| rRNA methylase family protein [Enterococcus faecalis TX2141]
 gi|315151636|gb|EFT95652.1| rRNA methylase family protein [Enterococcus faecalis TX0012]
 gi|315161913|gb|EFU05930.1| rRNA methylase family protein [Enterococcus faecalis TX0645]
 gi|315174703|gb|EFU18720.1| rRNA methylase family protein [Enterococcus faecalis TX1346]
 gi|315573416|gb|EFU85607.1| rRNA methylase family protein [Enterococcus faecalis TX0309B]
 gi|315581334|gb|EFU93525.1| rRNA methylase family protein [Enterococcus faecalis TX0309A]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78
          LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ +
Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64


>gi|270291587|ref|ZP_06197807.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4]
 gi|270279906|gb|EFA25744.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +V+      PG  ++DAT G  G+   F          V + D    A+S  +  + 
Sbjct: 12  LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGRVFSFDIQTAALSATEARLE 65

Query: 80  DY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 +   L Q +  QL  Y  D  + G VF+LG 
Sbjct: 66  KQLPDHQHVQLIQDSHDQLTQY-VDTPISGAVFNLGY 101


>gi|323488395|ref|ZP_08093642.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323397902|gb|EGA90701.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMR 79
           LLE+ +       G V++D T G  G+   F          V A D    A+   +E ++
Sbjct: 13  LLEQAVT-----SGDVVIDGTAGN-GHDTHFLASLTGANGKVFAFDIQAEAIHATRERVQ 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           ++ +   L   + ++++DYV +  +   VF+LG 
Sbjct: 67  EF-DHIELIHDSHAKIKDYVTE-PIAAAVFNLGY 98


>gi|153939332|ref|YP_001389723.1| hypothetical protein CLI_0427 [Clostridium botulinum F str.
           Langeland]
 gi|170757483|ref|YP_001780008.1| hypothetical protein CLD_0396 [Clostridium botulinum B1 str. Okra]
 gi|152935228|gb|ABS40726.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169122695|gb|ACA46531.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G +++D T G  G+              VI+ D    A++  +E +R++  +        
Sbjct: 24  GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
            +  D    + V   +F+LG 
Sbjct: 83  HENLDRHIQEKVKLFIFNLGY 103


>gi|288905978|ref|YP_003431200.1| rRNA methylase [Streptococcus gallolyticus UCN34]
 gi|288732704|emb|CBI14278.1| Putative rRNA methylase [Streptococcus gallolyticus UCN34]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+     A     +DAT G G  + +F    +  V A D    A+   +E +   + 
Sbjct: 13  LAEVLDEQAIA-----VDATMGNGNDT-AFLAQHTKEVYAFDVQEQALQSTKERLEKQEI 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             +       Q  D+  ++ +   +F+LG 
Sbjct: 67  HNAHLILDGHQHIDHYVNQPIRAAIFNLGY 96


>gi|212638269|ref|YP_002314789.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212559749|gb|ACJ32804.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ--- 84
           L    G +++DAT G  G+ +    +      +V   D    A+    + + ++  +   
Sbjct: 17  LAVKEGDIVVDATIGN-GHDTLYLAERVGQSGHVFGFDIQAQAIENTTKRLHEHHMETRV 75

Query: 85  --FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                  A             + G +F+LG 
Sbjct: 76  TLVQASHAEIDAHIPPEYKGRITGAMFNLGY 106


>gi|167759369|ref|ZP_02431496.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704]
 gi|167662926|gb|EDS07056.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 8/157 (5%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE--QFSLFQAT 91
           G   +DAT G G  +   C +      V+A D    A+   Q  +++     + SL +  
Sbjct: 21  GGFYIDATMGNGKDTLMLCTLAGKAGSVLAFDIQDTALQATQRLLKEQGCLERASLIKDG 80

Query: 92  FSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
              +  Y  +   D + F+ G     S  I              L +      +S     
Sbjct: 81  HEHMDLYAGEGTADVICFNFGYLPGGSHHIATRATTSVEAIQKGLKILKKGGMMSLCIYS 140

Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
                 +    +     E  A      +      A  
Sbjct: 141 GGDTGFEEKERILDYLRELPAREYTVIVNAYYNRANN 177


>gi|306831998|ref|ZP_07465153.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306834120|ref|ZP_07467240.1| rRNA methylase [Streptococcus bovis ATCC 700338]
 gi|325978945|ref|YP_004288661.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304423693|gb|EFM26839.1| rRNA methylase [Streptococcus bovis ATCC 700338]
 gi|304425924|gb|EFM29041.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178873|emb|CBZ48917.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+     A     +DAT G G  + +F    +  V A D    A+   +E +   + 
Sbjct: 13  LAEVLDEQAIA-----VDATMGNGNDT-AFLAQHAKEVYAFDVQEQALQSTKERLEKQEI 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             +       Q  D+  ++ +   +F+LG 
Sbjct: 67  HNAHLILDGHQHIDHYVNQPIRAAIFNLGY 96


>gi|295317811|gb|ADF98188.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G +++D T G  G+              VI+ D    A++  +E +R++  +        
Sbjct: 24  GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
            +  D    + V   +F+LG 
Sbjct: 83  HENLDRHIQEKVKLFIFNLGY 103


>gi|304384539|ref|ZP_07366885.1| rRNA methylase [Pediococcus acidilactici DSM 20284]
 gi|304328733|gb|EFL95953.1| rRNA methylase [Pediococcus acidilactici DSM 20284]
          Length = 187

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +V+      PG  ++DAT G  G+   F          V + D    A+S  +  + 
Sbjct: 12  LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGQVFSFDIQAAALSATEARLE 65

Query: 80  DY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 +   L Q +  QL  Y  D  + G VF+LG 
Sbjct: 66  KQLPDHQHVQLIQDSHDQLTQY-VDTPISGAVFNLGY 101


>gi|239828101|ref|YP_002950725.1| rRNA methylase [Geobacillus sp. WCH70]
 gi|239808394|gb|ACS25459.1| putative rRNA methylase [Geobacillus sp. WCH70]
          Length = 191

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQF 85
           L    G +++DAT G  G+ +    +      +V   D    A++     ++++    + 
Sbjct: 16  LAVNEGDIVVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAIAKTSARLQEHNMLNRV 74

Query: 86  SLFQATFSQLQDYVPDKG---VDGVVFDLGV 113
           +LFQA+  QL + +P      + G +F+LG 
Sbjct: 75  TLFQASHDQLIEKIPSIYHGRITGAMFNLGY 105


>gi|319892816|ref|YP_004149691.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162512|gb|ADV06055.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464152|gb|ADX76305.1| rRNA methylase, putative [Staphylococcus pseudintermedius ED99]
          Length = 187

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFS 93
           V++DAT G  G+   F        +V   D    A+   ++ + DY     F       +
Sbjct: 23  VVIDATCGN-GHDTKFLADLVPHGHVYGCDIQQEAIENTKQRVHDYNNVSLFHTGHEWIT 81

Query: 94  QLQDYVPDKGVDGVVFDLGV 113
           Q         V   +F+LG 
Sbjct: 82  QYIRDEHLTQVHAAIFNLGY 101


>gi|224476851|ref|YP_002634457.1| hypothetical protein Sca_1368 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421458|emb|CAL28272.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
                 ++DAT G  G+   F         V   D    A+   Q  +RD      L   
Sbjct: 18  INESSTVIDATCGN-GHDTLFLAEHVPNGKVYGFDIQEEAIKAAQLKVRDLNNTI-LIHD 75

Query: 91  TFSQLQDYV--PDKGVDGVVFDLGV 113
               ++ Y+   D  VD  +F+LG 
Sbjct: 76  GHENIEQYIESNDYPVDAAIFNLGY 100


>gi|83310707|ref|YP_420971.1| SAM-dependent methyltransferase [Magnetospirillum magneticum
          AMB-1]
 gi|82945548|dbj|BAE50412.1| SAM-dependent methyltransferase [Magnetospirillum magneticum
          AMB-1]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          A L P  G  +LD   G G ++R F   G NV ALDRD       Q  + +  E
Sbjct: 18 AALVP-EGGTVLDLACGGGRHARLFLDRGHNVTALDRD-----IAQARLAEGAE 65


>gi|323702788|ref|ZP_08114448.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574]
 gi|323532305|gb|EGB22184.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK---EQF 85
               G   +D T G  G+              V A D    A++  +E +       E+ 
Sbjct: 18  KLQAGDTAVDGTMGN-GHDTLILAQLVGPTGKVWAFDIQAQALANTRERLATAGVLDERI 76

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            L Q     ++ Y     +   +++LG 
Sbjct: 77  ELIQDGHEYIKKY-VSHPIQAAIYNLGY 103


>gi|187777042|ref|ZP_02993515.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC
           15579]
 gi|187773970|gb|EDU37772.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC
           15579]
          Length = 188

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQAT 91
           G + +D T G  G+              VI+ D    A+   +E ++D      +L    
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNEGKVISFDIQKEAIDKTKEKLKDIDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  Y+ +  V   +F+LG 
Sbjct: 83  HENLDRYIQE-KVKLFIFNLGY 103


>gi|220932037|ref|YP_002508945.1| putative rRNA methylase [Halothermothrix orenii H 168]
 gi|219993347|gb|ACL69950.1| putative rRNA methylase [Halothermothrix orenii H 168]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+   F          V + D    A+   +  +++    E+  L
Sbjct: 26  VKKGSTVIDATAGN-GHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEERVYL 84

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                  L +Y+  + +DGV+F+LG 
Sbjct: 85  IHDGHENLDNYIKGQFIDGVIFNLGY 110


>gi|157151080|ref|YP_001450937.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075874|gb|ABV10557.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 184

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R + +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHE 135


>gi|332359111|gb|EGJ36932.1| rRNA methylase [Streptococcus sanguinis SK49]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAD- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R   +  +
Sbjct: 65  ------------LDNAQLILAGHETMDQYTDHFKAAIFNLGYLPSADKSVITRPDTTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LKKVCQGLEKGGRAAIMIYYGHE 135


>gi|324991319|gb|EGC23252.1| rRNA methylase [Streptococcus sanguinis SK353]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 22/144 (15%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+   F    +  V A D    AV    + + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTHQRLSEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           +   L  A    L  Y         +F+LG                    +  R   +  
Sbjct: 66  DNVQLILAGHEILDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
           +   V           I+   G E
Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135


>gi|30684861|ref|NP_683312.2| methylase-related [Arabidopsis thaliana]
 gi|26983794|gb|AAN86149.1| unknown protein [Arabidopsis thaliana]
 gi|332191331|gb|AEE29452.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK--------MGSNVIALDRDPFAVSCGQETM-----RD 80
              G  ++DAT G G  + +  K         G  V A+D    A+      +       
Sbjct: 95  IQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154

Query: 81  YKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113
            KE   LF    S++ + VP+   V  V F+LG 
Sbjct: 155 EKECVKLFNLCHSKMGEIVPENARVRMVAFNLGY 188


>gi|291485487|dbj|BAI86562.1| hypothetical protein BSNT_04441 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 194

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ----FSL 87
            G +++DAT G  G+   F         +V A D    AV+  +E + D  +     F  
Sbjct: 20  EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                ++         V   VF+LG 
Sbjct: 79  SHDKIAESLPPETHGKVAAAVFNLGY 104


>gi|16080101|ref|NP_390927.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310989|ref|ZP_03592836.1| hypothetical protein Bsubs1_16601 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315316|ref|ZP_03597121.1| hypothetical protein BsubsN3_16507 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320233|ref|ZP_03601527.1| hypothetical protein BsubsJ_16428 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324515|ref|ZP_03605809.1| hypothetical protein BsubsS_16577 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815732|sp|O34614|YTQB_BACSU RecName: Full=Putative rRNA methylase ytqB
 gi|2293301|gb|AAC00379.1| YtqB [Bacillus subtilis]
 gi|2635533|emb|CAB15027.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 194

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ----FSL 87
            G +++DAT G  G+   F         +V A D    AV+  +E + D  +     F  
Sbjct: 20  EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                ++         V   VF+LG 
Sbjct: 79  SHDKIAESLPPETHGKVAAAVFNLGY 104


>gi|300855525|ref|YP_003780509.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300435640|gb|ADK15407.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 188

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
           +    G +++DAT G G  +    ++      V + D    A+   +E +      E   
Sbjct: 18  IKLNKGDIVVDATMGNGNDTELLAELVGSSGKVYSFDIQETALQNTKEKLMKSNVSEWVK 77

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146
           L       +  YV DK    +              + G+  +    +  +   + ++   
Sbjct: 78  LIHDGHENMDKYVKDKINLVIF-------------NLGYLPKGEHSVTTKSETTLVALKK 124

Query: 147 VVNQANVKDLTRILGILG 164
            +N      +  ++   G
Sbjct: 125 ALNLICKNGIIILVVYYG 142


>gi|322377325|ref|ZP_08051816.1| SAM-dependent methyltransferase, MraW methylase family
          [Streptococcus sp. M334]
 gi|321281525|gb|EFX58534.1| SAM-dependent methyltransferase, MraW methylase family
          [Streptococcus sp. M334]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 14 LAEVVT-----QDDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQEQALEKTQERLNQAGM 67


>gi|289167555|ref|YP_003445824.1| hypothetical protein smi_0709 [Streptococcus mitis B6]
 gi|288907122|emb|CBJ21956.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 167

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 12 LAEVVT-----QDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLNQAGM 65


>gi|228475902|ref|ZP_04060612.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus hominis SK119]
 gi|228270057|gb|EEK11527.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus hominis SK119]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +    +      V   D    A+   +E +  +K    +    
Sbjct: 18  IQHDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIASFKHVTLIHDGH 77

Query: 92  FSQLQDYVPDK--GVDGVVFDLGV 113
            + L D   D    VD  +F+LG 
Sbjct: 78  ENILNDIPSDVIGNVDAAIFNLGY 101


>gi|321312586|ref|YP_004204873.1| putative RNA methylase [Bacillus subtilis BSn5]
 gi|320018860|gb|ADV93846.1| putative RNA methylase [Bacillus subtilis BSn5]
          Length = 194

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ----FSL 87
            G +++DAT G  G+   F         +V A D    AV+  +E + D  +     F  
Sbjct: 20  EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFQK 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                ++         V   VF+LG 
Sbjct: 79  SHDKIAESLPPETHGKVAAAVFNLGY 104


>gi|293374332|ref|ZP_06620659.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|292646995|gb|EFF64978.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LLEK+++      G+ ++DAT G  GY   F          V + D    A+   +  + 
Sbjct: 15  LLEKIVSA-----GETVIDATAGN-GYDTLFLAKLVGESGKVFSFDVQQEAIDSTKAKLE 68

Query: 80  DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV--SSMQIDCGDRGFSFQKSGPLDMR 136
           + K E  SL       + +YV +  +   +F+LG    S Q        +++    +   
Sbjct: 69  EAKLENVSLILDGHQHVLNYVTE-EISAAIFNLGYLPGSDQSITTTGETTWKAVTDMLSL 127

Query: 137 MSCSGISASDVVNQANVKDLTRILGILG 164
           +  +G+    + +      + R      
Sbjct: 128 LKKNGLIILVIYHGHEEGKVERHFLEDC 155


>gi|315641876|ref|ZP_07896868.1| rRNA methylase [Enterococcus italicus DSM 15952]
 gi|315482444|gb|EFU72984.1| rRNA methylase [Enterococcus italicus DSM 15952]
          Length = 187

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78
           L +++I       G  ++DAT G  G+  +F         +V A D    A+   ++ + 
Sbjct: 12  LAKEII-----LSGDCVVDATMGN-GHDTAFLAQLVGPTGHVFAFDVQKPALIATEQRLL 65

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV 113
             D  ++ +L      Q   Y P +  +   +F+LG 
Sbjct: 66  AADLLDRTTLIHDGHEQFTQYFPKQTALKLAIFNLGY 102


>gi|255505263|ref|ZP_05345115.3| putative rRNA methylase [Bryantella formatexigens DSM 14469]
 gi|255269025|gb|EET62230.1| putative rRNA methylase [Bryantella formatexigens DSM 14469]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD--YKEQFSLF 88
              G + +DAT G G  ++  C       +V+A D  P A+   +E +        + L 
Sbjct: 52  IHEGSLCIDATMGNGNDTQFLCTQAGRNGSVLAFDIQPAALEHTKERLAHALPYCNYQLI 111

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
             +  +L  Y   +  D + F+LG 
Sbjct: 112 LDSHERLDAYAAPESADCIAFNLGY 136


>gi|313887999|ref|ZP_07821677.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845954|gb|EFR33337.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 23/136 (16%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQ--FSLFQAT 91
           GK+ +DAT G G  +    K       V   D    A+S  +  +  Y     F    A 
Sbjct: 21  GKIAVDATVGKGNDTLKLLKAVGKDGFVYGFDVQEEALSKARVLLAGYDNYEFFLDSHAN 80

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151
             +L+                  S  +   + GF       +      +  S      + 
Sbjct: 81  IDRLE------------------SFDLVIYNLGFLPGSDKKITTLRESTLESLRKATEKI 122

Query: 152 NVKDLTRILGILGEEK 167
           N   L  ++  LG E 
Sbjct: 123 NEAGLIILVSYLGHEN 138


>gi|164688312|ref|ZP_02212340.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM
           16795]
 gi|164602725|gb|EDQ96190.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM
           16795]
          Length = 190

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS-CGQETMRDYKEQFSLFQ 89
              G V++DAT G G  +    K       V A D    A+    ++  ++      L  
Sbjct: 22  IQEGDVVVDATMGNGYDTVYLAKKVGENGKVYAFDVQEEALKSTTKKVNKEELNNVELIL 81

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                +  YV +  V  +VF+LG 
Sbjct: 82  DGHQNMDKYVKE-EVSCIVFNLGY 104


>gi|154687178|ref|YP_001422339.1| YtqB [Bacillus amyloliquefaciens FZB42]
 gi|154353029|gb|ABS75108.1| YtqB [Bacillus amyloliquefaciens FZB42]
          Length = 193

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQ 89
             G + +DAT G  G+   F         +V A D    A++  +E +  D+  + +L  
Sbjct: 19  QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGADFSPRVTLHH 77

Query: 90  ATFSQLQDYVPDK---GVDGVVFDLGV 113
            +  Q++  +P+     V   VF+LG 
Sbjct: 78  KSHDQIKASLPEDAHGRVACAVFNLGY 104


>gi|78224015|ref|YP_385762.1| putative rRNA methylase [Geobacter metallireducens GS-15]
 gi|78195270|gb|ABB33037.1| putative rRNA methylase [Geobacter metallireducens GS-15]
          Length = 1128

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 35   APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFSLF 88
             PG   +DAT G  G+   F          V A D    A++  +E + +   +++ +L 
Sbjct: 959  RPGDRAVDATCGN-GHDTLFLAQLVGPQGRVWAFDVQAKALAATEERLAEAGCRDRVALV 1017

Query: 89   QATFSQLQDYVPDKGVDGVVFDLGV 113
                 +L + V    V  VVF+LG 
Sbjct: 1018 HGGHERLAEVVT-GPVRAVVFNLGF 1041


>gi|311031210|ref|ZP_07709300.1| putative rRNA methylase [Bacillus sp. m3-13]
          Length = 190

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK----- 82
           L    G + +D T G  G+   F         +V   D    A+S  +  + ++      
Sbjct: 16  LALTEGDIAVDCTVGN-GHDTLFLSELVGENGHVFGFDIQAEALSNTKTLLAEHGVESRV 74

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             F    A   +         + G +F+LG 
Sbjct: 75  TLFEDSHAKVLERIPSEKHHLIRGAIFNLGY 105


>gi|306824940|ref|ZP_07458283.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432767|gb|EFM35740.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 185

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKRVYAFDIQEQALEKTQERLDQAGM 65


>gi|168184845|ref|ZP_02619509.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237793675|ref|YP_002861227.1| hypothetical protein CLJ_B0411 [Clostridium botulinum Ba4 str. 657]
 gi|182672096|gb|EDT84057.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229263450|gb|ACQ54483.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 29/188 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G + +D T G  G+              VI+ D    A++  +E +R +  +        
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLRKFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
            +  D    + V   +F+LG                K   +  +   +  +    +   +
Sbjct: 83  HENLDRHIQEKVKLFIFNLGY------------LPGKDHNITTKAETTLKALKKALKLLD 130

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
              +  ++   G E              +       +  S L QK     KN+ I+ A  
Sbjct: 131 DNGIVLLVIYYGHENG------------KEEKAALEKFTSKLDQKVYNVMKNSFINQANN 178

Query: 213 SFQALRIF 220
               + I 
Sbjct: 179 PPLLICIE 186


>gi|325263526|ref|ZP_08130260.1| putative rRNA methylase [Clostridium sp. D5]
 gi|324031235|gb|EGB92516.1| putative rRNA methylase [Clostridium sp. D5]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD--YKEQFSLF 88
             PG V +DAT G G  +   C++      V A D    A++   E +    +  +  L 
Sbjct: 19  IEPGDVCVDATAGNGNDTEFLCRLAGSTGKVYAFDIQQEALAHTAERIEKLGFGSRARLI 78

Query: 89  QATFSQLQDYVPDKGVDGVV 108
           Q    ++ +YV +     V 
Sbjct: 79  QDGHEKMGEYVKEDVSAIVF 98


>gi|225181671|ref|ZP_03735111.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1]
 gi|225167652|gb|EEG76463.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1]
          Length = 184

 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 37  GKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA 90
           G V +DAT G  G+   F       G  V+A D    AV   +E + +    ++  L+  
Sbjct: 19  GGVAVDATCGN-GHDTLFLAQQVGPGGTVLAFDIQQQAVDATKERLAEAALLDRVQLYTD 77

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
           + + L DYV   G+D ++F+LG 
Sbjct: 78  SHANLDDYVQS-GIDAMMFNLGY 99


>gi|322375523|ref|ZP_08050036.1| SAM-dependent methyltransferase, MraW methylase family
          [Streptococcus sp. C300]
 gi|321279786|gb|EFX56826.1| SAM-dependent methyltransferase, MraW methylase family
          [Streptococcus sp. C300]
          Length = 187

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 14 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 67


>gi|315613451|ref|ZP_07888359.1| rRNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315314447|gb|EFU62491.1| rRNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65


>gi|306829787|ref|ZP_07462976.1| rRNA methylase [Streptococcus mitis ATCC 6249]
 gi|304428138|gb|EFM31229.1| rRNA methylase [Streptococcus mitis ATCC 6249]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65


>gi|148378358|ref|YP_001252899.1| hypothetical protein CBO0355 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931757|ref|YP_001382757.1| hypothetical protein CLB_0398 [Clostridium botulinum A str. ATCC
           19397]
 gi|153936917|ref|YP_001386308.1| hypothetical protein CLC_0413 [Clostridium botulinum A str. Hall]
 gi|226947586|ref|YP_002802677.1| hypothetical protein CLM_0423 [Clostridium botulinum A2 str. Kyoto]
 gi|148287842|emb|CAL81908.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927801|gb|ABS33301.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152932831|gb|ABS38330.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|226842840|gb|ACO85506.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 29/188 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G + +D T G  G+              VI+ D    A++  +E +R++  +        
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
            +  D    + V   +F+LG                K   +  +   +  +    +   +
Sbjct: 83  HENLDKHIQEKVKLFIFNLGY------------LPGKDHNITTKAETTLKALKKALKLLD 130

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
              +  ++   G E              +       +  S L QK     KN+ I+ A  
Sbjct: 131 DNGIVLLVIYYGHENG------------KEEKAALEKFTSELDQKVYNVMKNSFINQANN 178

Query: 213 SFQALRIF 220
               + I 
Sbjct: 179 PPLLICIE 186


>gi|270292446|ref|ZP_06198657.1| SAM-dependent methyltransferase, MraW methylase family
          [Streptococcus sp. M143]
 gi|270278425|gb|EFA24271.1| SAM-dependent methyltransferase, MraW methylase family
          [Streptococcus sp. M143]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +
Sbjct: 12 LAEVVT-----QDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERL 60


>gi|322385960|ref|ZP_08059600.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269943|gb|EFX52863.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 182

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         V++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDVVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R + +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHE 135


>gi|291522365|emb|CBK80658.1| Putative rRNA methylase [Coprococcus catus GD/7]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 33  NPAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETM--RDYKEQFS 86
              PG  + D T G  G+ +   C++  +   V + D  P A+S  +  +          
Sbjct: 20  QIRPGDTVCDCTMGN-GHDTAYMCRLTGDTGTVYSFDIQPEALSRTEALLTEEHLLTPAR 78

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L   + S L+ Y  D  +   VF+LG 
Sbjct: 79  LILDSHSHLKQY-IDHPIRFFVFNLGY 104


>gi|170758569|ref|YP_001785692.1| hypothetical protein CLK_3543 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405558|gb|ACA53969.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G + +D T G  G+              VI+ D    A++  +E +R++  +        
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
            +  D    + V   +F+LG 
Sbjct: 83  HENLDRHIQEKVKLFIFNLGY 103


>gi|282882011|ref|ZP_06290652.1| rRNA methylase [Peptoniphilus lacrimalis 315-B]
 gi|281298041|gb|EFA90496.1| rRNA methylase [Peptoniphilus lacrimalis 315-B]
          Length = 181

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY 81
           +++++   N   GK  +DAT G G  +    K       V A D    A++  +E  ++ 
Sbjct: 11  VDEILK--NDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQAINYCKEKFKNI 68

Query: 82  KE--QFSLFQATFSQLQDYVPDKGVDGVV 108
                  +       L+++       G +
Sbjct: 69  NNLEILKISHEFIDILENFDLAIYNLGYL 97


>gi|222152593|ref|YP_002561768.1| rRNA methylase [Streptococcus uberis 0140J]
 gi|222113404|emb|CAR41065.1| putative rRNA methylase [Streptococcus uberis 0140J]
          Length = 181

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ 94
              + +DAT G G  +  F  +   V A D    A+S  Q+ +     E   L       
Sbjct: 18  KDSIFVDATVGNGNDTLYFAPLVKKVYAFDIQKEAISRTQQKLEANGIENVILIHDGHEN 77

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           +  YV D  +D  +F+LG 
Sbjct: 78  VNHYVQD--IDAAIFNLGY 94


>gi|160947166|ref|ZP_02094333.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270]
 gi|158446300|gb|EDP23295.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 39  VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQ 94
           + +D T G G  S++  ++     +   D    A+   ++ ++ Y            F +
Sbjct: 24  IAVDMTVGNGFDSKNILEILKPEKLYCFDIQQEALDNSKKLLKQYSNFELILENHKNFDK 83

Query: 95  LQDYVPDKGVDGVVF 109
                 D  +  + +
Sbjct: 84  FVKENIDFAMYNLGY 98


>gi|325841279|ref|ZP_08167380.1| putative rRNA methylase [Turicibacter sp. HGF1]
 gi|325489960|gb|EGC92307.1| putative rRNA methylase [Turicibacter sp. HGF1]
          Length = 187

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LLEK+++      G+ ++DAT G  GY   F          V + D    A+   +  + 
Sbjct: 15  LLEKIVS-----SGETVIDATAGN-GYDTLFLAKLVGESGKVFSFDVQQEAIDSTKAKLE 68

Query: 80  DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV--SSMQIDCGDRGFSFQKSGPLDMR 136
           + K E  SL       + +YV +  +   +F+LG    S Q        +++    +   
Sbjct: 69  EAKLENVSLILDGHQHVLNYVTE-EISAAIFNLGYLPGSDQSITTTGETTWKAVTDMLSL 127

Query: 137 MSCSGISASDVVNQANVKDLTRILGILG 164
           +  +G+    + +      + R      
Sbjct: 128 LKKNGLIILVIYHGHEEGKVERHFLEDC 155


>gi|326331617|ref|ZP_08197905.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1]
 gi|325950416|gb|EGD42468.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 30 ALLNPAPGKVILDATFGAGG--YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
            L    G+ +LD   GAGG  ++    + G++VIA D+D   ++   E     +++ 
Sbjct: 7  DRLGLKAGERVLD--MGAGGGRHAFEMYRRGADVIAFDQDAEELAKVSEWFFAMRDEV 62


>gi|322804628|emb|CBZ02180.1| sam-dependent methyltransferase, MraW methylase family [Clostridium
           botulinum H04402 065]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 29/188 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G + +D T G  G+              VI+ D    A++  +E +R++  +        
Sbjct: 24  GDIAVDCTLGK-GHDTVLLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
            +  D    + V   +F+LG                K   +  +   +  +    +   +
Sbjct: 83  HEKLDKHIQEKVKLFIFNLGY------------LPGKDHNVTTKAETTLKALKKALKLLD 130

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
              +  ++   G E              +       +  S L QK     KN+ I+ A  
Sbjct: 131 DNGIVLLVIYYGHENG------------KEEKAALEKFTSELDQKVYNVMKNSFINQANN 178

Query: 213 SFQALRIF 220
               + I 
Sbjct: 179 PPLLICIE 186


>gi|168177698|ref|ZP_02612362.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182671192|gb|EDT83166.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           G + +D T G  G+              VI+ D    A++  +E +R++  +        
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
            +  D    + V   +F+LG 
Sbjct: 83  HENLDRHIQEKVKLFIFNLGY 103


>gi|294501591|ref|YP_003565291.1| putative rRNA methylase [Bacillus megaterium QM B1551]
 gi|295706939|ref|YP_003600014.1| putative rRNA methylase [Bacillus megaterium DSM 319]
 gi|294351528|gb|ADE71857.1| putative rRNA methylase [Bacillus megaterium QM B1551]
 gi|294804598|gb|ADF41664.1| putative rRNA methylase [Bacillus megaterium DSM 319]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY--KEQFS 86
             A G V +DAT G  G+   F         +V   D  P A+   Q+ + ++  + + +
Sbjct: 17  AVAQGDVAIDATAGN-GHDTLFLANLVGDTGHVYGFDIQPQAIQATQQRLTEHHVENRVT 75

Query: 87  LFQATFSQLQDYVP--DKGVDGVVFDLGV 113
           L Q + S +          V G VF+LG 
Sbjct: 76  LIQESHSNINMLPRSIKGRVTGAVFNLGY 104


>gi|315223317|ref|ZP_07865178.1| rRNA methylase family protein [Streptococcus anginosus F0211]
 gi|315187749|gb|EFU21503.1| rRNA methylase family protein [Streptococcus anginosus F0211]
          Length = 182

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
                +++DAT G  G+   F    +  V A D    A+    + + + K +   LF   
Sbjct: 16  ITKEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAIEQTTKRLAEAKLDNVELFLTG 74

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              +  YV    +   +F+LG 
Sbjct: 75  HENVDQYVES--IKAAIFNLGY 94


>gi|168487256|ref|ZP_02711764.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC1087-00]
 gi|183569859|gb|EDT90387.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC1087-00]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQKQALEKTQERLHQAG 64


>gi|242281044|ref|YP_002993173.1| rRNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242123938|gb|ACS81634.1| putative rRNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQET 77
             VL  +V+      PG + +DAT G G  +    +      +V   D    AV+  ++ 
Sbjct: 11  KSVLC-EVLH-----PGCIGVDATVGNGYDTVFLSEKAGPDGHVFGFDIQEDAVNQTEQR 64

Query: 78  M--RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV--SSMQIDCGDRGFSFQKS 130
           +        +++F +    + + +P +    V+ V+F+LG    S +        +    
Sbjct: 65  LNEECLPANWTIFHSGHENMLELIPSEFHGRVNAVMFNLGFLPGSDKTVITKSKTTLAAI 124

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRI-LGILGEEKQASRI 172
                 ++  G+    +       D   + +            
Sbjct: 125 EASLDLLAKGGMLCIAIYAGHPGGDDEDVAVREYCNALDYHTY 167


>gi|222056740|ref|YP_002539102.1| rRNA methylase [Geobacter sp. FRC-32]
 gi|221566029|gb|ACM22001.1| putative rRNA methylase [Geobacter sp. FRC-32]
          Length = 228

 Score = 44.7 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKE--QFSL 87
             PG  ++DAT G  G+   F     +    V A D    A+   +  + + K   +  L
Sbjct: 60  VKPGDRVVDATCGN-GHDTLFLAGLVEAEGAVFAFDVQEQALEKTRLLLEENKCLDRVQL 118

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           F A   +L  YVPD  V  V F+LG 
Sbjct: 119 FHAGHQELAAYVPD-PVQAVAFNLGY 143


>gi|39995796|ref|NP_951747.1| hypothetical protein GSU0690 [Geobacter sulfurreducens PCA]
 gi|39982560|gb|AAR34020.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298504804|gb|ADI83527.1| rRNA methyltransferase, putative [Geobacter sulfurreducens KN400]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFSL 87
             PG  ++DAT G  G+   F          V A D    A++   + +      E+  L
Sbjct: 20  VKPGDRVVDATCGN-GHDTLFLAELVGPEGRVWAFDIQDAALAATAKRLEAAGCGERVEL 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                 +L + VP   V  VVF+LG 
Sbjct: 79  VNGGHERLAELVP-GPVTAVVFNLGF 103


>gi|302786828|ref|XP_002975185.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii]
 gi|300157344|gb|EFJ23970.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii]
          Length = 184

 Score = 44.7 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSCGQETMRDY-----K 82
             PG  ++D T G G  +    ++         V   D    A+      +  +     +
Sbjct: 10  VRPGDTVVDTTCGNGIDTLLLARLVSPGSLLGRVYGFDIQKEALERTSLLLEQHLTPEQR 69

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +  LFQ   S++ + + D     VV++LG 
Sbjct: 70  NRVELFQDCHSKMGEVLKDVRARLVVYNLGY 100


>gi|327470441|gb|EGF15897.1| rRNA methylase [Streptococcus sanguinis SK330]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R + +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHE 135


>gi|325687100|gb|EGD29123.1| rRNA methylase [Streptococcus sanguinis SK72]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R + +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHE 135


>gi|225867956|ref|YP_002743904.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus]
 gi|225701232|emb|CAW98182.1| putative rRNA methylase [Streptococcus equi subsp. zooepidemicus]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
           L++V+         + +DAT G  GY  +F    S  V A D    A++  QE +     
Sbjct: 13  LKEVLD-----KQSIAVDATMGN-GYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGL 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             +       +  D    + +   +F+LG 
Sbjct: 67  TNAELILAGHEQVDQYVKEPIRAAIFNLGY 96


>gi|225871129|ref|YP_002747076.1| rRNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225700533|emb|CAW95003.1| putative rRNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
           L++V+         + +DAT G  GY  +F    S  V A D    A++  QE +     
Sbjct: 13  LKEVLD-----KQSIAVDATMGN-GYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGL 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             +       +  D    + +   +F+LG 
Sbjct: 67  TNAELILAGHEQVDQYVKEPIRAAIFNLGY 96


>gi|195978727|ref|YP_002123971.1| SAM-dependent methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975432|gb|ACG62958.1| SAM-dependent methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
           L++V+         + +DAT G  GY  +F    S  V A D    A++  QE +     
Sbjct: 13  LKEVLD-----KQSIAVDATMGN-GYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGL 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             +       +  D    + +   +F+LG 
Sbjct: 67  TNAELILAGHEQVDQYVKEPIRAAIFNLGY 96


>gi|332358319|gb|EGJ36145.1| rRNA methylase [Streptococcus sanguinis SK355]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+          ++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDTVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D  +   +    + G+       +  R   +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYLDHFKAAIFNLGYLPSADKSVITRPDTTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LEKVCLGLEKGGRAAIMIYYGHE 135


>gi|332367422|gb|EGJ45155.1| rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 22/144 (15%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+          ++DAT G  G+   F    +  V A D    AV    + + +   
Sbjct: 12  LAEVVT-----KEDTVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTCQRLAEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           +   L  A    L  Y         +F+LG                    +  R   +  
Sbjct: 66  DNVQLILAGHETLDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
           +   V           I+   G E
Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135


>gi|116873097|ref|YP_849878.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741975|emb|CAK21099.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+          +  +V+  D    A++  +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLADLVGINGHVLGFDIQQQAINATKTRLENAGVTPQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + +  Y     V   +F+LG 
Sbjct: 77  VCASHAFIPKYATK-PVRAAIFNLGY 101


>gi|328946868|gb|EGG41005.1| rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ +     
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAKAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R + +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V           I+   G E
Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHE 135


>gi|225858482|ref|YP_002739992.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585]
 gi|225721149|gb|ACO17003.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 64


>gi|149010726|ref|ZP_01832097.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75]
 gi|147765207|gb|EDK72136.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 64


>gi|148985234|ref|ZP_01818457.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71]
 gi|148992239|ref|ZP_01821962.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68]
 gi|148997267|ref|ZP_01824921.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70]
 gi|149002339|ref|ZP_01827281.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69]
 gi|149020266|ref|ZP_01835158.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72]
 gi|168482881|ref|ZP_02707833.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC1873-00]
 gi|168488333|ref|ZP_02712532.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195]
 gi|168492272|ref|ZP_02716415.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC0288-04]
 gi|168492810|ref|ZP_02716953.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC3059-06]
 gi|168575323|ref|ZP_02721259.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          MLV-016]
 gi|221231470|ref|YP_002510622.1| rRNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854180|ref|YP_002735692.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA]
 gi|225860645|ref|YP_002742154.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|237650321|ref|ZP_04524573.1| hypothetical protein SpneC1_06279 [Streptococcus pneumoniae CCRI
          1974]
 gi|237821694|ref|ZP_04597539.1| hypothetical protein SpneC19_05192 [Streptococcus pneumoniae CCRI
          1974M2]
 gi|298230021|ref|ZP_06963702.1| hypothetical protein SpneCMD_05066 [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298254125|ref|ZP_06977711.1| hypothetical protein SpneCM_00732 [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502448|ref|YP_003724388.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A]
 gi|303254765|ref|ZP_07340866.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae
          BS455]
 gi|303259926|ref|ZP_07345900.1| hypothetical protein CGSSp9vBS293_03943 [Streptococcus pneumoniae
          SP-BS293]
 gi|303261331|ref|ZP_07347279.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae
          SP14-BS292]
 gi|303263997|ref|ZP_07349918.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae
          BS397]
 gi|303266311|ref|ZP_07352201.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae
          BS457]
 gi|303269776|ref|ZP_07355526.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae
          BS458]
 gi|307067272|ref|YP_003876238.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|147756967|gb|EDK64007.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70]
 gi|147759654|gb|EDK66645.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69]
 gi|147922432|gb|EDK73551.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71]
 gi|147928865|gb|EDK79877.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68]
 gi|147930568|gb|EDK81550.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72]
 gi|172043844|gb|EDT51890.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC1873-00]
 gi|183572979|gb|EDT93507.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195]
 gi|183573546|gb|EDT94074.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC0288-04]
 gi|183577040|gb|EDT97568.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          CDC3059-06]
 gi|183578412|gb|EDT98940.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          MLV-016]
 gi|220673930|emb|CAR68439.1| putative rRNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225723979|gb|ACO19832.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA]
 gi|225727226|gb|ACO23077.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298238043|gb|ADI69174.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A]
 gi|301799692|emb|CBW32257.1| putative rRNA methylase [Streptococcus pneumoniae OXC141]
 gi|301801517|emb|CBW34209.1| putative rRNA methylase [Streptococcus pneumoniae INV200]
 gi|302598305|gb|EFL65350.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae
          BS455]
 gi|302637465|gb|EFL67952.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae
          SP14-BS292]
 gi|302638845|gb|EFL69306.1| hypothetical protein CGSSpBS293_03943 [Streptococcus pneumoniae
          SP-BS293]
 gi|302640698|gb|EFL71095.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae
          BS458]
 gi|302644122|gb|EFL74379.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae
          BS457]
 gi|302646402|gb|EFL76628.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae
          BS397]
 gi|306408809|gb|ADM84236.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|327390384|gb|EGE88725.1| rRNA methylase [Streptococcus pneumoniae GA04375]
 gi|332075948|gb|EGI86414.1| rRNA methylase [Streptococcus pneumoniae GA41301]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 64


>gi|15902615|ref|NP_358165.1| hypothetical protein spr0571 [Streptococcus pneumoniae R6]
 gi|116516252|ref|YP_816066.1| hypothetical protein SPD_0567 [Streptococcus pneumoniae D39]
 gi|182683579|ref|YP_001835326.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14]
 gi|15458150|gb|AAK99375.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076828|gb|ABJ54548.1| rRNA methylase, putative [Streptococcus pneumoniae D39]
 gi|182628913|gb|ACB89861.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 14 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 66


>gi|149005767|ref|ZP_01829506.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae
          SP18-BS74]
 gi|169834297|ref|YP_001694128.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          Hungary19A-6]
 gi|307126848|ref|YP_003878879.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|147762707|gb|EDK69667.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae
          SP18-BS74]
 gi|168996799|gb|ACA37411.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
          Hungary19A-6]
 gi|301793835|emb|CBW36228.1| putative rRNA methylase [Streptococcus pneumoniae INV104]
 gi|306483910|gb|ADM90779.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|332077081|gb|EGI87543.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
          [Streptococcus pneumoniae GA17545]
 gi|332204671|gb|EGJ18736.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
          [Streptococcus pneumoniae GA47901]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAD 64


>gi|15900553|ref|NP_345157.1| hypothetical protein SP_0652 [Streptococcus pneumoniae TIGR4]
 gi|111657722|ref|ZP_01408447.1| hypothetical protein SpneT_02001094 [Streptococcus pneumoniae
          TIGR4]
 gi|14972124|gb|AAK74797.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAD 64


>gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 183

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 25/145 (17%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDY 81
           V+ ++            ++DAT G  G+   F    +  V A D    AV   ++ + + 
Sbjct: 15  VMTKE----------DTVVDATMGN-GHDTLFLAQLARKVYAFDIQEQAVEKTRQRLAEA 63

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141
                          D            D  +   +    + G+       +  R + + 
Sbjct: 64  G-------------LDNAQLILAGHETLDQYLDHFKAAIFNLGYLPSADKSVITRPATTL 110

Query: 142 ISASDVVNQANVKDLTRILGILGEE 166
            +   V           I+   G E
Sbjct: 111 EALEKVCQGLEKGGRAAIMIYYGHE 135


>gi|194398444|ref|YP_002037310.1| hypothetical protein SPG_0595 [Streptococcus pneumoniae G54]
 gi|194358111|gb|ACF56559.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAG 64


>gi|148989023|ref|ZP_01820423.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73]
 gi|147925520|gb|EDK76597.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         V++DAT G  G+   F    +  V A D    A+   QE +    
Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAG 64


>gi|327462037|gb|EGF08366.1| rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 183

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L  A    L  Y         +F+LG 
Sbjct: 66  DNAQLILAGHETLDQYT--NHFKAAIFNLGY 94


>gi|322390058|ref|ZP_08063593.1| rRNA methylase [Streptococcus parasanguinis ATCC 903]
 gi|321143185|gb|EFX38628.1| rRNA methylase [Streptococcus parasanguinis ATCC 903]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L +VI         V++DAT G  G+ +    K+   V A D    A++  QE +     
Sbjct: 12  LAEVIT-----KEDVVVDATMGN-GHDTVFLAKLAGQVYAFDIQEQALANTQEKLDKLGL 65

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           Q         Q  D   +  +   +F+LG 
Sbjct: 66  QHVQLILDGHQHVDQYVE-TLKAAIFNLGY 94


>gi|296331975|ref|ZP_06874439.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305675631|ref|YP_003867303.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|296150746|gb|EFG91631.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305413875|gb|ADM38994.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
          W23]
          Length = 194

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90
           G +++DAT G  G+   F         +V A D    AV+  +E +   Y+ + +LF  
Sbjct: 20 EGDIVIDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHK 78

Query: 91 TFSQLQD 97
          +  ++  
Sbjct: 79 SHDKIAK 85


>gi|322411186|gb|EFY02094.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 184

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         V++DAT G G  +    +    V A D    A+    E +      
Sbjct: 13  LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D    + V   +F+LG 
Sbjct: 68  NAELILAGHEAVDEYVTEPVRAAIFNLGY 96


>gi|314936143|ref|ZP_07843490.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80]
 gi|313654762|gb|EFS18507.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80]
          Length = 186

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +    +      V   D    A+   +E +  +K    +    
Sbjct: 18  IQDDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIVSFKHVTLIHDGH 77

Query: 92  FSQLQDYVPDK--GVDGVVFDLGV 113
            + L D   D    VD  +F+LG 
Sbjct: 78  ENILNDIPSDVIGNVDAAIFNLGY 101


>gi|262283226|ref|ZP_06060993.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262261478|gb|EEY80177.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 184

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDIVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG- 64

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                        D            D      +    + G+       +  R   +  +
Sbjct: 65  ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPDTTLEA 112

Query: 144 ASDVVNQANVKDLTRILGILGEE 166
              V +         I+   G E
Sbjct: 113 LEKVCHGLEKCGRVAIMIYYGHE 135


>gi|293365734|ref|ZP_06612443.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316102|gb|EFE56546.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQEKALEKTQERLDQAGM 65


>gi|297844572|ref|XP_002890167.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336009|gb|EFH66426.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 274

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK--------MGSNVIALDRDPFAVSCGQETM-----RD 80
              G +++DAT G G  + +  K         G  V A+D    A+      +       
Sbjct: 95  IQKGDMVIDATCGNGNDTLAMLKMVMNDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154

Query: 81  YKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113
            KE   LF    S++ + VP+   V  V F+LG 
Sbjct: 155 EKECVKLFNICHSKMGEIVPENSRVRMVAFNLGY 188


>gi|319938710|ref|ZP_08013074.1| methyltransferase [Streptococcus anginosus 1_2_62CV]
 gi|319811760|gb|EFW08026.1| methyltransferase [Streptococcus anginosus 1_2_62CV]
          Length = 182

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82
          LE+V+         +++DAT G  G+   F    +  V A D    AV    + + + K
Sbjct: 12 LEEVVT-----DEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAVEQTTKRLAEAK 64


>gi|289550483|ref|YP_003471387.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus lugdunensis HKU09-01]
 gi|315657973|ref|ZP_07910847.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289180015|gb|ADC87260.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus lugdunensis HKU09-01]
 gi|315497009|gb|EFU85330.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 187

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
                +++DAT G G  +    +     +V   D    A+    + ++ +K         
Sbjct: 18  IQSDSIVIDATCGNGFDTLFLAQHVPKGHVYGFDIQQQAIDNTAKKIKSFKNVSLIHDSH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
              S          +   +F+LG 
Sbjct: 78  EYISDHLISAHKNKITAAIFNLGY 101


>gi|251781840|ref|YP_002996142.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390469|dbj|BAH80928.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126654|gb|ADX23951.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 184

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         V++DAT G G  +    +    V A D    A+    E +      
Sbjct: 13  LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D    + V   +F+LG 
Sbjct: 68  NAELILAGHEAVDQYVTEPVRAAIFNLGY 96


>gi|299469608|emb|CBN76462.1| methylase-related [Ectocarpus siliculosus]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 20/116 (17%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSF-----CKMG-SNVI 62
           + A  H+   H   LL + +A     PG  +LD T G  G+ S         K G  ++ 
Sbjct: 260 NPAASHSHMAH---LLWRQVAG----PGDTVLDCTAGN-GHDSLELAKIVALKDGVGSLY 311

Query: 63  ALDRDPFAVSCGQETMRDYKEQF-----SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +D    A+   +E +R    +      +L    F ++   +    V  VV++LG 
Sbjct: 312 VMDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGW 367


>gi|296133196|ref|YP_003640443.1| putative rRNA methylase [Thermincola sp. JR]
 gi|296031774|gb|ADG82542.1| putative rRNA methylase [Thermincola potens JR]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
              PG  ++DAT G  GY   F          V   D    A+   +  +      E+  
Sbjct: 19  KIGPGATVIDATVGN-GYDTLFLAEAVGVVGRVYGFDIQAEAIENTKLRLLKEGLLERVL 77

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           LF      L   V +  +DG++F+LG 
Sbjct: 78  LFHEGHENLAHRVTE-NIDGIMFNLGY 103


>gi|56421381|ref|YP_148699.1| hypothetical protein GK2846 [Geobacillus kaustophilus HTA426]
 gi|56381223|dbj|BAD77131.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 195

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G + +DAT G  G+ +    +      +V   D    A++     + 
Sbjct: 13  LLDQAVN-----EGDIAVDATVGN-GHDTVYLAQRVGDFGHVFGFDIQSEAITAASARLA 66

Query: 80  DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +        F    +   +         + G VF+LG 
Sbjct: 67  KHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105


>gi|324993678|gb|EGC25597.1| rRNA methylase [Streptococcus sanguinis SK405]
 gi|324995009|gb|EGC26922.1| rRNA methylase [Streptococcus sanguinis SK678]
 gi|325696334|gb|EGD38225.1| rRNA methylase [Streptococcus sanguinis SK160]
 gi|327490109|gb|EGF21897.1| rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 22/144 (15%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+          ++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDTVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLSEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           +   L  +    L  Y         +F+LG                    +  R   +  
Sbjct: 66  DNAQLILSGHESLDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
           +   V           I+   G E
Sbjct: 112 ALKKVCQGLEKGGRAAIMIYYGHE 135


>gi|125718569|ref|YP_001035702.1| hypothetical protein SSA_1769 [Streptococcus sanguinis SK36]
 gi|125498486|gb|ABN45152.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +  
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64


>gi|323341734|ref|ZP_08081967.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464159|gb|EFY09352.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 174

 Score = 43.9 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
               +++D T G G  +        +V A+D    A+   ++  +++    +   +  S+
Sbjct: 16  NKDSIVVDMTCGNGYDTHFLANHAGHVYAIDIQEEAILSSKQLNQNFSN-ITYIHSDHSR 74

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           + ++       G +++LG 
Sbjct: 75  V-NFEEKAPFTGAIYNLGY 92


>gi|329768391|ref|ZP_08259885.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341]
 gi|328837144|gb|EGF86785.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQET----- 77
           LL++VI         +++DAT G G  +    K  +  V A D    A+           
Sbjct: 11  LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVYAFDIQQLAIENTTNLIKEAE 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           + D  E        F +      ++ +  VVF+LG 
Sbjct: 66  LADKCEIILDSHFEFDK----YINEKIRAVVFNLGY 97


>gi|313637570|gb|EFS02980.1| methylase protein [Listeria seeligeri FSL S4-171]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  +       Q  L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  ICASHATIPEYAT-TPVRAAIFNLGY 101


>gi|289434949|ref|YP_003464821.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171193|emb|CBH27735.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  +       Q  L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  ICASHATIPEYAT-TPVRAAIFNLGY 101


>gi|295399585|ref|ZP_06809567.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109860|ref|YP_003988176.1| rRNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294979051|gb|EFG54647.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214961|gb|ADP73565.1| rRNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE---- 83
           L    G + +DAT G  G+ +    +      +V   D    A+S     ++++      
Sbjct: 16  LAVNEGDIAVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAISATSARLQEHNMLQRV 74

Query: 84  -QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             F        +         + G +F+LG 
Sbjct: 75  TLFQASHDQLIEKIPAHYHGRITGAMFNLGY 105


>gi|332799053|ref|YP_004460552.1| 50S ribosomal protein L11 methyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696788|gb|AEE91245.1| Ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1]
          Length = 314

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 13  IHHTIGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFC-----KMGSN-VIAL 64
           +    G H   +L   + +L         ++D   G+G            K+G+  V+A+
Sbjct: 150 MAFGTGTHETTML--CLEILEKYIKKDITVIDVGCGSG-----ILSIASGKLGAKQVLAI 202

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
           DRD  AV   +E ++    +  +      +LQ+    
Sbjct: 203 DRDENAVRIARENIKRNNLETCVRAVKGDKLQNINFK 239


>gi|290474987|ref|YP_003467871.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289174304|emb|CBJ81096.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 271

 Score = 43.9 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           VI L     G+ ++D   G G +S +  + G NVI +D +   +S  +     +      
Sbjct: 55  VINLCGLKSGQYLIDCPCGYGRHSVALREKGINVIGIDVNDEHLSIARRHAEVHNSDVIF 114

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSS 115
            +      +       +  + +  G  S
Sbjct: 115 RKDDMRTFKLERQVDVLINMFYSFGFFS 142


>gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 254

 Score = 43.9 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQE 76
          + LL+P  G+ ILD   G G G+ +      G++V+ +D DP  ++  Q+
Sbjct: 26 LQLLDPQSGEDILD--LGCGTGHLTAKIASSGASVLGIDADPAMIAAAQQ 73


>gi|149177324|ref|ZP_01855929.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
           8797]
 gi|148843849|gb|EDL58207.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
           8797]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 35  APGKVILDATFGAGGY-SRSFCK---MGSNVIALDRDPFAVSCG----QETMRDYKEQFS 86
            PG+  +DAT G  G+ +R  C+       V A+D    A+       QE      E   
Sbjct: 17  QPGETAVDATAGN-GHDTRFLCELAGKSGKVFAIDIQQQALDQTAVMLQELEYHNFELIC 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 S+L        +  V+F+LG 
Sbjct: 76  GDHRLISELIPTQYQGRIGAVMFNLGY 102


>gi|294010470|ref|YP_003543930.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium
           japonicum UT26S]
 gi|292673800|dbj|BAI95318.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium
           japonicum UT26S]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDY 81
           E ++A L P  G+ I+D   G G  S +      +  + VI LD D  A+   +      
Sbjct: 31  EAMLAALAPRGGETIVDIGCGTG--SFALLLKRDEPSARVIGLDPDAEALDIARRKAAAM 88

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVF 109
                  Q   + L +   D  V  +V 
Sbjct: 89  VADVDWRQGFATDLPEQSADAVVSSLVL 116


>gi|331266078|ref|YP_004325708.1| hypothetical protein SOR_0705 [Streptococcus oralis Uo5]
 gi|326682750|emb|CBZ00367.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 185

 Score = 43.5 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
          L +V+         +++DAT G  G+   F    +  V A D    A+   QE +     
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQDKALEKTQERLDQAGM 65


>gi|168335198|ref|ZP_02693303.1| possible rRNA methyltransferase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 185

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             A G  ++DAT G G  +            V A D    A++     + ++        
Sbjct: 17  AIAAGDSVVDATCGNGNDTLFLANLVGAEGKVYAFDIQDVAIAETTRLLAEHNIDCVQVI 76

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
               ++     +  +   +F+LG 
Sbjct: 77  KDGHEVAHKYMESSIAAAIFNLGY 100


>gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
 gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
 gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
 gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
 gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
 gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus]
          Length = 225

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 33  SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 92

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 93  KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 134


>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|241889241|ref|ZP_04776544.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
 gi|241864078|gb|EER68457.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
          Length = 189

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQET----- 77
           LL++VI         V++DAT G G  +    K  +  V A D    A+           
Sbjct: 11  LLKEVID-----KNSVVVDATAGNGNDTLFLAKTSAKKVYAFDIQELAIENTTRLIEEAE 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           + D  E        F +      D  +  VVF+LG 
Sbjct: 66  LTDKCEIVLDSHFEFDK----YIDDTIRAVVFNLGY 97


>gi|162447114|ref|YP_001620246.1| methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985221|gb|ABX80870.1| methyltransferase [Acholeplasma laidlawii PG-8A]
          Length = 174

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 34  PAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
             P   I+DAT G  G+   F      +V A D    A+   +   +D     +    + 
Sbjct: 18  IKPHMTIVDATCGN-GHDTLFLASRVEHVHAFDIQQEALDNTRSLTKDLDN-ITYHHTSH 75

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
             +   + +   DGV+F+LG 
Sbjct: 76  EHITKLISN--YDGVIFNLGY 94


>gi|332362266|gb|EGJ40066.1| rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 183

 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+   F    +  V A D    AV   ++ + +   
Sbjct: 12  LAEVVT-----KEDVVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLTEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L  A    L  Y   +     +F+LG 
Sbjct: 66  DNVQLILAGHETLDQYT--EHFKAAIFNLGY 94


>gi|308174723|ref|YP_003921428.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307607587|emb|CBI43958.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328554653|gb|AEB25145.1| RNA methylase [Bacillus amyloliquefaciens TA208]
 gi|328913062|gb|AEB64658.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 193

 Score = 43.5 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQ 89
             G + +DAT G  G+   F         +V A D    A++  +E + D    + +L  
Sbjct: 19  QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGDALSPRVTLHH 77

Query: 90  ATFSQLQDYVPDK---GVDGVVFDLGV 113
            +  Q++  +P+     V   VF+LG 
Sbjct: 78  KSHDQIKASLPEDAHGRVACAVFNLGY 104


>gi|154503156|ref|ZP_02040216.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149]
 gi|153796150|gb|EDN78570.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149]
          Length = 180

 Score = 43.5 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G   +DAT G G  +   C+       V A D    AV   ++ + +    E+  + 
Sbjct: 6   IKEGDCCVDATAGNGNDTEFLCRLTGADGKVYAFDIQKAAVEHTKKRLEEAGLTERAKVI 65

Query: 89  QATFSQLQDYVPDKGVDGVV 108
                 +++YV +       
Sbjct: 66  LDGHEHMENYVRETVSAITF 85


>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
 gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|152977113|ref|YP_001376630.1| putative rRNA methylase [Bacillus cereus subsp. cytotoxis NVH
          391-98]
 gi|152025865|gb|ABS23635.1| putative rRNA methylase [Bacillus cytotoxicus NVH 391-98]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK 82
              G   +DAT G  G+   F          V   D    A+      +++  
Sbjct: 17 AVKEGDYAVDATLGN-GHDACFLAEIVGENGKVFGFDIQKEAIENSTARLKEKG 69


>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
 gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
 gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
 gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|332701445|ref|ZP_08421533.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551594|gb|EGJ48638.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK-----EQ 84
              PG + +DAT G G  +    +       V   D    A+   +E +         + 
Sbjct: 18  ALRPGDLAVDATLGNGRDAVLLAESVGQAGKVFCFDIQEVAIHRARERLAAAGLLERVQI 77

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           F       ++         V    F+LG 
Sbjct: 78  FRAGHERLTEHLPPESQGHVRAATFNLGF 106


>gi|332709849|ref|ZP_08429806.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Lyngbya majuscula 3L]
 gi|332351447|gb|EGJ31030.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Lyngbya majuscula 3L]
          Length = 297

 Score = 43.1 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +++++      PG ++LDA  G G ++R   ++ S V+ +D D   ++  +E  +D   
Sbjct: 42 VKEILGF--VRPGDMVLDAGCGTGQHARYLAEVASKVVGIDTDSARIAIAKEHCQDLDN 98


>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
 gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
          Length = 426

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    S V+A+D D   +   QE ++  K   
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        QD+  D+  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQDWWQDEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|55823549|ref|YP_141990.1| rRNA methylase [Streptococcus thermophilus CNRZ1066]
 gi|55739534|gb|AAV63175.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus CNRZ1066]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         +++DAT G G  +     +   V A D    A+    + + D   +
Sbjct: 13  LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQAIGKTSQRLSDLGIE 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D+   + +   +F+LG 
Sbjct: 68  NTELILDGHENLDHYVREPIRAAIFNLGY 96


>gi|322387483|ref|ZP_08061093.1| rRNA methylase [Streptococcus infantis ATCC 700779]
 gi|321142012|gb|EFX37507.1| rRNA methylase [Streptococcus infantis ATCC 700779]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
            L        V++DAT G  G+   F    +  V A D    A+    + +++  
Sbjct: 10 DFLAQVITKDDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALQKTSKRIQEAG 64


>gi|238021263|ref|ZP_04601689.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147]
 gi|237868243|gb|EEP69249.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147]
          Length = 191

 Score = 43.1 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  +LD T G  G+              V A D    A++   + ++ ++  E+  L
Sbjct: 18  IHAGDTVLDGTAGN-GHDTLLLAQLVGSAGKVYAFDIQDSALAATADRLQQHQLIERVQL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A    L      + +   +F++G 
Sbjct: 77  IHAGHQHLAR-HVKQPIAAAIFNMGY 101


>gi|260583635|ref|ZP_05851383.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260158261|gb|EEW93329.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 186

 Score = 43.1 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMR-- 79
           L++ I      PG  ++DAT G G  +       +    V A D    A+    E ++  
Sbjct: 13  LQECI-----KPGDCVIDATMGNGNDTIFLSKLVQSEGKVFAFDIQEAALIRTNEKIQEL 67

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D KE   L   + + L  Y   + +   +F+LG 
Sbjct: 68  DTKENIHLICDSHANLSTY-VQQPIQAAIFNLGY 100


>gi|213861638|ref|ZP_03386108.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 88

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A RIA AIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN+E+E
Sbjct: 1   RFAKRIARAIVERNREQPMTRTKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELE 59

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           E+ Q L+S+   L  GG L ++SFHSLED
Sbjct: 60  EIEQALKSSLNVLAPGGRLSIISFHSLED 88


>gi|290893255|ref|ZP_06556242.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557237|gb|EFD90764.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 191

 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           +L KV+      PG  ++DAT G  G+             +V+  D    AV   +  + 
Sbjct: 13  MLRKVV-----RPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLE 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     Q  L  A+ +++  Y   + V   +F+LG 
Sbjct: 67  NAGVSSQVELVCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|219848992|ref|YP_002463425.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
 gi|219543251|gb|ACL24989.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
          Length = 241

 Score = 42.8 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           ++LL    GK +LDA  G G YS      G+ VIA+D +P  V    + +++  +     
Sbjct: 40  LSLLPDVRGKRVLDAGCGPGVYSELLLDRGAEVIAIDANPKMVQLAHQRLQNRAQVLQAD 99

Query: 89  QAT 91
              
Sbjct: 100 LGQ 102


>gi|319946473|ref|ZP_08020710.1| rRNA methylase [Streptococcus australis ATCC 700641]
 gi|319747441|gb|EFV99697.1| rRNA methylase [Streptococcus australis ATCC 700641]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +VI          ++DAT G  G+   F    +  V A D    A+   Q+ + +  
Sbjct: 12 LREVIT-----DQDTVVDATMGN-GHDTLFLAKLAKEVYAFDIQEQALVHTQKRLEEAG 64


>gi|255544606|ref|XP_002513364.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus
           communis]
 gi|223547272|gb|EEF48767.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus
           communis]
          Length = 286

 Score = 42.8 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 35  APGKVILDATFGAGGY-SRSFCKM------GSNVIALDRDPFAVSCGQETM--------R 79
             G  ++DAT G  G+ + +  KM        +V  +D    A+      +        +
Sbjct: 92  QKGDTVVDATCGN-GHDTLALLKMVADESGNGHVYGMDIQSDALDNTSSLLDETVTSEEK 150

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +  + FS+  +   ++     +  V  V F+LG 
Sbjct: 151 ELVKLFSICHSRMEEI--VPENTPVRLVAFNLGY 182


>gi|322391712|ref|ZP_08065179.1| rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145422|gb|EFX40816.1| rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
            L        +++DAT G  GY   F    +  V A D    A+    + +++  
Sbjct: 10 DFLAEIINKEDIVVDATMGN-GYDTLFLARLAKQVYAFDIQEQALEKTSQRLQEAG 64


>gi|203282572|pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282573|pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282574|pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282575|pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282576|pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282577|pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282578|pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282579|pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282580|pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282581|pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
          Length = 197

 Score = 42.8 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G  ++DAT G G  +     +      V   D    A++   + + D    ++ +L 
Sbjct: 20  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 79

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +  Y  D  V  V+F+LG 
Sbjct: 80  KDGHQNMDKY-IDCPVKAVMFNLGY 103


>gi|281417413|ref|ZP_06248433.1| putative rRNA methylase [Clostridium thermocellum JW20]
 gi|281408815|gb|EFB39073.1| putative rRNA methylase [Clostridium thermocellum JW20]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G  ++DAT G G  +     +      V   D    A++   + + D    ++ +L 
Sbjct: 19  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +  Y  D  V  V+F+LG 
Sbjct: 79  KDGHQNMDKY-IDCPVKAVMFNLGY 102


>gi|125973214|ref|YP_001037124.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405]
 gi|256003689|ref|ZP_05428677.1| putative rRNA methylase [Clostridium thermocellum DSM 2360]
 gi|125713439|gb|ABN51931.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405]
 gi|255992250|gb|EEU02344.1| putative rRNA methylase [Clostridium thermocellum DSM 2360]
 gi|316940556|gb|ADU74590.1| rRNA methylase [Clostridium thermocellum DSM 1313]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G  ++DAT G G  +     +      V   D    A++   + + D    ++ +L 
Sbjct: 19  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +  Y  D  V  V+F+LG 
Sbjct: 79  KDGHQNMDKY-IDCPVKAVMFNLGY 102


>gi|307824127|ref|ZP_07654354.1| putative rRNA methylase [Methylobacter tundripaludum SV96]
 gi|307734911|gb|EFO05761.1| putative rRNA methylase [Methylobacter tundripaludum SV96]
          Length = 191

 Score = 42.8 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQE--TMRDYKEQFSLF 88
            PG + +DAT G  G+   F         +V   D    A+    E        E  +L 
Sbjct: 19  RPGDIAIDATVGN-GHDTVFLAEQVGPSGHVYGFDIQQAAIDSTLEKFRQAPSPEYLTLI 77

Query: 89  QATFSQLQD---YVPDKGVDGVVFDLGV 113
            A+ + + +         V  ++F+LG 
Sbjct: 78  HASHADMDEKIPAYHHGKVRVIMFNLGY 105


>gi|49484008|ref|YP_041232.1| hypothetical protein SAR1846 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425874|ref|ZP_05602298.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428541|ref|ZP_05604939.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431175|ref|ZP_05607552.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433856|ref|ZP_05610214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436773|ref|ZP_05612817.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904336|ref|ZP_06312224.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160]
 gi|282906161|ref|ZP_06314016.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909078|ref|ZP_06316896.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282914555|ref|ZP_06322341.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899]
 gi|282919523|ref|ZP_06327258.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924901|ref|ZP_06332567.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958514|ref|ZP_06375965.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503633|ref|ZP_06667480.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510649|ref|ZP_06669354.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537190|ref|ZP_06671870.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428337|ref|ZP_06820966.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590699|ref|ZP_06949337.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242137|emb|CAG40837.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271568|gb|EEV03714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275382|gb|EEV06869.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278123|gb|EEV08771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281949|gb|EEV12086.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284124|gb|EEV14247.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313267|gb|EFB43663.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317333|gb|EFB47707.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321736|gb|EFB52061.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899]
 gi|282327342|gb|EFB57637.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331453|gb|EFB60967.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595954|gb|EFC00918.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160]
 gi|283790663|gb|EFC29480.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920035|gb|EFD97103.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095299|gb|EFE25564.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466540|gb|EFF09061.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127737|gb|EFG57374.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575585|gb|EFH94301.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|315195675|gb|EFU26062.1| hypothetical protein CGSSa00_08420 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 187

 Score = 42.8 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLVKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|269125397|ref|YP_003298767.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268310355|gb|ACY96729.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183]
          Length = 337

 Score = 42.8 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          + LL+P P + I+D   G G +S +  + G+ V+ +D  P  ++    T        +  
Sbjct: 23 VDLLDPQPDERIIDLGCGTGVFSAAIAERGAQVLGIDGSPEMIAQAAATYPQLSFVVADA 82

Query: 89 QAT 91
             
Sbjct: 83 HDF 85


>gi|310640916|ref|YP_003945674.1| rRNA methylase [Paenibacillus polymyxa SC2]
 gi|309245866|gb|ADO55433.1| Putative rRNA methylase [Paenibacillus polymyxa SC2]
          Length = 193

 Score = 42.8 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
            PG   +DAT G G  +    K       V   D    A+   +  + +
Sbjct: 18 VQPGDTAVDATVGTGADTLFLAKAAGKRGRVYGFDIQQAALDYARRRLEE 67


>gi|313632956|gb|EFR99886.1| methylase protein [Listeria seeligeri FSL N1-067]
          Length = 191

 Score = 42.8 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  +       Q  L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIATTKTRLENAAVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  ICASHATIPEYAT-TPVRAAIFNLGY 101


>gi|78066871|ref|YP_369640.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383]
 gi|77967616|gb|ABB08996.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383]
          Length = 200

 Score = 42.8 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          PG  +LD   G G ++R F   G  V+ALDRDP A++  +  
Sbjct: 31 PGGAVLDVAAGGGRHARWFASHGHPVVALDRDPTALAALRAI 72


>gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative,pseudogene
           [Trypanosoma brucei gambiense DAL972]
          Length = 251

 Score = 42.8 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92
                 LD   G GG +    ++   VIA+D DP A+   ++    Y    + +   A +
Sbjct: 59  KDKGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKNAEVYGVSTRVTFLCADY 118

Query: 93  SQLQDYVPDKGVDGVV 108
             L+            
Sbjct: 119 RTLKPENFSVNAVHCS 134


>gi|325109448|ref|YP_004270516.1| rRNA methylase [Planctomyces brasiliensis DSM 5305]
 gi|324969716|gb|ADY60494.1| rRNA methylase [Planctomyces brasiliensis DSM 5305]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 20 HVP-V-LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSC 73
          H+  V +    +      PG  ++DAT G  G+              V A D  P A+  
Sbjct: 3  HISLVDMAHAAVQQ-AVQPGDCVIDATAGN-GHDTLILAEAVFPEGQVHAFDIQPSAIEQ 60

Query: 74 GQETM-RDYKEQFSLFQATFSQLQ 96
           +  +  +     SL+QA+ +++ 
Sbjct: 61 TRLRLPANLSSIVSLYQASHAEMP 84


>gi|46447254|ref|YP_008619.1| hypothetical protein pc1620 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400895|emb|CAF24344.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 182

 Score = 42.8 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 41  LDATFGAGGYSRSFCKMG-----SNVIALDRDPFAVSCGQETMRDYKE-----QFSLFQA 90
           +DAT G G  +   C++        V A D    A+   +  +R++       Q +    
Sbjct: 2   IDATCGNGNDTLKLCQLLLSNGDGKVYAFDNQSDAIDKTKVLLREHLNLDQFKQINFILG 61

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
             S+  DYV    +  +V++LG 
Sbjct: 62  CHSKFSDYVLPNTIKLIVYNLGY 84


>gi|309800616|ref|ZP_07694760.1| rRNA methylase [Streptococcus infantis SK1302]
 gi|308115762|gb|EFO53294.1| rRNA methylase [Streptococcus infantis SK1302]
          Length = 185

 Score = 42.8 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
            L        +++DAT G  G+   F    +  V A D    A+    + +++  
Sbjct: 10 DFLAQVITQEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTSQRLQEAD 64


>gi|282917021|ref|ZP_06324779.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770839|ref|ZP_06343731.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319508|gb|EFB49860.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460986|gb|EFC08076.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 187

 Score = 42.8 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|326803839|ref|YP_004321657.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650099|gb|AEA00282.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 24  LLEKVIA----LLN--PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSC 73
           +L+ VI     ++      G   LDAT G  G+              V   D    A+  
Sbjct: 1   MLKNVIEVSHHIIKGHLQTGMTALDATIGN-GHDTLLLAQIVGQSGQVYGFDLQKQAIRA 59

Query: 74  GQETMR--DYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGV 113
            Q  +     +EQ SL+  + +++  Y   D  +D V+F+LG 
Sbjct: 60  TQALLEKHHCQEQVSLYHDSHAKISQYLKADDYLDLVIFNLGY 102


>gi|299143842|ref|ZP_07036922.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518327|gb|EFI42066.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 37  GKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF 92
           GKV LDAT G G  S            + A D    A++   E ++    E F LF  + 
Sbjct: 23  GKVCLDATCGRGNDSLKLLDKIGIKGFLYACDIQEEAINSTMELLKSKGYENFKLFNKSH 82

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
           +++ DY+ +  +  ++++LG 
Sbjct: 83  TEVFDYIKE-PISLIIYNLGY 102


>gi|257065730|ref|YP_003151986.1| putative rRNA methylase [Anaerococcus prevotii DSM 20548]
 gi|256797610|gb|ACV28265.1| putative rRNA methylase [Anaerococcus prevotii DSM 20548]
          Length = 181

 Score = 42.4 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 24  LLEKVIALLNPAPGKV--ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79
           L+++++         +   +D T G G  S     +     +IA D    A     + + 
Sbjct: 8   LVKEIL----IRKKDIDLAVDMTAGNGNDSAFILDVLGAKKLIAFDIQEAARENTLKLLG 63

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                F+    + + +  YV +  +D  V++LG 
Sbjct: 64  PRDN-FTFVLDSHAHIDKYVKE-KIDLAVYNLGY 95


>gi|217964188|ref|YP_002349866.1| methylase protein [Listeria monocytogenes HCC23]
 gi|217333458|gb|ACK39252.1| methylase protein [Listeria monocytogenes HCC23]
 gi|307571245|emb|CAR84424.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
           monocytogenes L99]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             PG  ++DAT G  G+             +V+  D    AV   +  + +      +  
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76

Query: 90  ATFSQLQ-DYVPDKGVDGVVFDLGV 113
              S  +      + V   +F+LG 
Sbjct: 77  VCASHARIPVYTSRPVRAAIFNLGY 101


>gi|253579059|ref|ZP_04856330.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850002|gb|EES77961.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.100,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR--DYKEQFS 86
               G   +DAT G G  +             V+A D    A++  Q+ +      E + 
Sbjct: 17  QVQEGDFCIDATMGNGNDT-LLLSQLCGESGKVLAFDIQEQALTATQKRLNAGHVPENYR 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L   + + + +Y     V  +VF+ G 
Sbjct: 76  LLLESHANMAEYATPDSVSCIVFNFGY 102


>gi|317496230|ref|ZP_07954590.1| SAM-dependent methyltransferase [Gemella moribillum M424]
 gi|316913805|gb|EFV35291.1| SAM-dependent methyltransferase [Gemella moribillum M424]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83
           L++VI         +++DAT G G  +    +  +  V A D    A+    + ++    
Sbjct: 12  LKEVID-----KNSIVVDATCGNGNDTLFLAQSAAKKVYAFDIQQQAIDSTLKLLQTNNC 66

Query: 84  --QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             +  +   + S   +Y+ +  +  VVF+LG 
Sbjct: 67  LEKCEVILDSHSNFDNYISE-PIKAVVFNLGY 97


>gi|261408931|ref|YP_003245172.1| putative rRNA methylase [Paenibacillus sp. Y412MC10]
 gi|261285394|gb|ACX67365.1| putative rRNA methylase [Paenibacillus sp. Y412MC10]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ------- 84
            PG + LDAT G G  +    K       V A D    A+   +E +             
Sbjct: 19  RPGDIALDATAGTGADTLYLAKCTGSKGKVYAFDIQEQALQLTRERLDKEPPGTLAEVSL 78

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                +   +    +    +  ++F+LG 
Sbjct: 79  LLQSHSLMRECVPEIEHGRMGAIMFNLGY 107


>gi|118468434|ref|YP_887597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118169721|gb|ABK70617.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            +AL+    G+ ILDA  G G Y+    K G+++I  D+ P  V   +  +     +   
Sbjct: 36  CLALIGDVAGRTILDAACGPGLYAEELAKRGASLIGFDQSPRMVELARARVPSGDFRVHD 95

Query: 88  FQATFS 93
                 
Sbjct: 96  LAGPLD 101


>gi|298368465|ref|ZP_06979783.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282468|gb|EFI23955.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             G   LD T G  G+          G  V A D  P A+   +  + +      L    
Sbjct: 19  KNGDAALDGTAGN-GHDTLLLAQCVGGGKVWAFDVQPQALQQTRRRLEEAGVSAELICDG 77

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             +L DY  D+ +   VF+ G 
Sbjct: 78  HEKLADY-VDRPLTAAVFNFGW 98


>gi|115464835|ref|NP_001056017.1| Os05g0511700 [Oryza sativa Japonica Group]
 gi|113579568|dbj|BAF17931.1| Os05g0511700 [Oryza sativa Japonica Group]
 gi|218197087|gb|EEC79514.1| hypothetical protein OsI_20592 [Oryza sativa Indica Group]
 gi|222632196|gb|EEE64328.1| hypothetical protein OsJ_19168 [Oryza sativa Japonica Group]
          Length = 260

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSCGQETMRDYKEQ--- 84
              G  ++DAT G G  + +  KM         V  LD    A++     ++        
Sbjct: 85  VRKGDTVVDATCGNGNDTFAMLKMVADERVQGRVYGLDIQESAIASTSSFLKMAVNSHEL 144

Query: 85  -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                F++  +   ++     D  V  V F+LG 
Sbjct: 145 ELVKLFTICHSRMEEV--VPKDFPVRLVAFNLGY 176


>gi|52081533|ref|YP_080324.1| hypothetical protein BL00061 [Bacillus licheniformis ATCC 14580]
 gi|319647443|ref|ZP_08001664.1| YtqB protein [Bacillus sp. BT1B_CT2]
 gi|52004744|gb|AAU24686.1| conserved protein YtqB [Bacillus licheniformis ATCC 14580]
 gi|317390489|gb|EFV71295.1| YtqB protein [Bacillus sp. BT1B_CT2]
          Length = 194

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90
           G +++DAT G  G+   F         +V A D    A+    E +  +YK++ +L Q 
Sbjct: 20 EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 78

Query: 91 TFSQL 95
          +  +L
Sbjct: 79 SHDEL 83


>gi|218461825|ref|ZP_03501916.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5]
          Length = 40

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
          IALDRDP A++ GQ  +  +  +  L  + FS L D+
Sbjct: 2  IALDRDPTAIAAGQAMVAAHGGRLRLVHSQFSHLADH 38


>gi|220929163|ref|YP_002506072.1| rRNA methylase [Clostridium cellulolyticum H10]
 gi|219999491|gb|ACL76092.1| putative rRNA methylase [Clostridium cellulolyticum H10]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 27/191 (14%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81
            ++++ +    G +++DAT G  G+  +F       G  V + D    A++  +  +   
Sbjct: 12  HEIVSRVVCN-GDIVVDATAGN-GHDTAFLAKLVGAGGLVYSFDIQESALNTTRNKLEAE 69

Query: 82  K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + +L       +  Y  +K +   +F+LG                    +  R   
Sbjct: 70  NLLNRVNLIHDGHQNMMKY-VNKPIKAAMFNLGY------------LPGGDHNIGTRGGT 116

Query: 140 SGISASDVVNQANVKDLTRILGILG------EEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           +  +    +       +  I+   G      E+ +       I  ++ S       +  +
Sbjct: 117 TIEAIKSAMELVVPHGIISIVVYYGGDSGFDEKNEVINYIKTIDCKKFSVMQTEFVNQIN 176

Query: 194 LIQKTVYFSKN 204
                V   KN
Sbjct: 177 CPPIFVCMEKN 187


>gi|118444903|ref|YP_878837.1| rRNA methylase [Clostridium novyi NT]
 gi|118135359|gb|ABK62403.1| putative rRNA methylase [Clostridium novyi NT]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M + + +++      L ++ IA+     G + +DAT G G  +    ++      + + D
Sbjct: 1   MKNVLTNSMN-----LAKE-IAIKKLQEGDIAVDATMGNGNDTVFLARLVGEKGKIYSFD 54

Query: 66  RDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               A+   ++ + D K   +  L       +  Y+ +  V  V+F+LG 
Sbjct: 55  VQSTAIENTKKRISDNKINTEIELIHDGHENIDKYIKE-KVKLVMFNLGY 103


>gi|52786912|ref|YP_092741.1| YtqB [Bacillus licheniformis ATCC 14580]
 gi|52349414|gb|AAU42048.1| YtqB [Bacillus licheniformis ATCC 14580]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    A+    E +  +YK++ +L Q 
Sbjct: 51  EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 109

Query: 91  TFSQL 95
           +  +L
Sbjct: 110 SHDEL 114


>gi|323439583|gb|EGA97303.1| hypothetical protein SAO11_1596 [Staphylococcus aureus O11]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|284042473|ref|YP_003392813.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283946694|gb|ADB49438.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 249

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          I LL+  PG  ++DA  G G Y  +  + G     +D  P A++  ++ 
Sbjct: 44 IELLDLRPGTTVVDAGCGFGRYCAALLEHGMEATGIDISPAAIAEAEKR 92


>gi|15924753|ref|NP_372287.1| hypothetical protein SAV1763 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927338|ref|NP_374871.1| hypothetical protein SA1582 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283433|ref|NP_646521.1| hypothetical protein MW1704 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486586|ref|YP_043807.1| hypothetical protein SAS1687 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57652059|ref|YP_186644.1| hypothetical protein SACOL1811 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161375|ref|YP_494401.1| hypothetical protein SAUSA300_1707 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195575|ref|YP_500381.1| hypothetical protein SAOUHSC_01878 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268239|ref|YP_001247182.1| hypothetical protein SaurJH9_1816 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394307|ref|YP_001316982.1| hypothetical protein SaurJH1_1851 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221866|ref|YP_001332688.1| hypothetical protein NWMN_1654 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156980080|ref|YP_001442339.1| hypothetical protein SAHV_1749 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509979|ref|YP_001575638.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141483|ref|ZP_03565976.1| hypothetical protein SauraJ_07563 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315864|ref|ZP_04839077.1| hypothetical protein SauraC_06907 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732414|ref|ZP_04866579.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734455|ref|ZP_04868620.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006549|ref|ZP_05145150.2| hypothetical protein SauraM_08770 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794144|ref|ZP_05643123.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258415848|ref|ZP_05682119.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258420677|ref|ZP_05683616.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258443785|ref|ZP_05692124.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445996|ref|ZP_05694172.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448276|ref|ZP_05696403.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258452312|ref|ZP_05700325.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454196|ref|ZP_05702167.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262049070|ref|ZP_06021948.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30]
 gi|262053062|ref|ZP_06025235.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3]
 gi|269203399|ref|YP_003282668.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893255|ref|ZP_06301489.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117]
 gi|282925648|ref|ZP_06333297.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765]
 gi|282927890|ref|ZP_06335501.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus
           A10102]
 gi|284024808|ref|ZP_06379206.1| hypothetical protein Saura13_09455 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294849922|ref|ZP_06790661.1| mraW [Staphylococcus aureus A9754]
 gi|295406072|ref|ZP_06815880.1| mraW [Staphylococcus aureus A8819]
 gi|296276045|ref|ZP_06858552.1| hypothetical protein SauraMR_06837 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207524|ref|ZP_06923960.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245003|ref|ZP_06928880.1| mraW [Staphylococcus aureus A8796]
 gi|300911608|ref|ZP_07129052.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380644|ref|ZP_07363315.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701557|dbj|BAB42850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247535|dbj|BAB57925.1| similar to SAM-dependent methyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204874|dbj|BAB95569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245029|emb|CAG43490.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286245|gb|AAW38339.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127349|gb|ABD21863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203133|gb|ABD30943.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741308|gb|ABQ49606.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946759|gb|ABR52695.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374666|dbj|BAF67926.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722215|dbj|BAF78632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368788|gb|ABX29759.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253723804|gb|EES92533.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727509|gb|EES96238.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788116|gb|EEV26456.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257839441|gb|EEV63914.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257843281|gb|EEV67691.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257851191|gb|EEV75134.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855238|gb|EEV78177.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858515|gb|EEV81391.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257860037|gb|EEV82872.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257863648|gb|EEV86405.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159039|gb|EEW44110.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3]
 gi|259162887|gb|EEW47451.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30]
 gi|262075689|gb|ACY11662.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941239|emb|CBI49627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590400|gb|EFB95479.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus
           A10102]
 gi|282592428|gb|EFB97442.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765]
 gi|282764573|gb|EFC04699.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117]
 gi|285817443|gb|ADC37930.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus aureus 04-02981]
 gi|294823261|gb|EFG39691.1| mraW [Staphylococcus aureus A9754]
 gi|294969069|gb|EFG45090.1| mraW [Staphylococcus aureus A8819]
 gi|296887860|gb|EFH26757.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178083|gb|EFH37331.1| mraW [Staphylococcus aureus A8796]
 gi|298695029|gb|ADI98251.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887029|gb|EFK82230.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333425|gb|ADL23618.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751588|gb|ADL65765.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340751|gb|EFM06680.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830139|emb|CBX34981.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130599|gb|EFT86585.1| hypothetical protein CGSSa03_10160 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197231|gb|EFU27570.1| hypothetical protein CGSSa01_01071 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140772|gb|EFW32623.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143789|gb|EFW35563.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314437|gb|AEB88850.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131]
 gi|329727003|gb|EGG63460.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21189]
 gi|329727361|gb|EGG63817.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21172]
 gi|329733230|gb|EGG69567.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21193]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|283471027|emb|CAQ50238.1| conserved protein YtqB [Staphylococcus aureus subsp. aureus ST398]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNYVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
 gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
           +L+P PG  ++D     GG   +     +    + A D D F +   +E ++        
Sbjct: 268 ILDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAFDIDEFRIKRMKEILKRMGVNIVK 327

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + +    +    +     D V+ D   +S      +    ++
Sbjct: 328 IIRKDGRKAPKILGRGIADRVLLDAPCTSSGTIGKNPELRWR 369


>gi|288553841|ref|YP_003425776.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus
           OF4]
 gi|288545001|gb|ADC48884.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus
           OF4]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 17/150 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78
           LLE+ I+     PG + +D T G  G+   F         +V ++D    A++  +  + 
Sbjct: 13  LLERSIS-----PGDIAVDCTAGN-GHDTLFLANLVGNTGHVYSVDIQETAITNTKLKVG 66

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGV--SSMQIDCGDRGFSFQKSGP 132
             +   + +L Q+    +   +P +    V   +F+LG      +        + +    
Sbjct: 67  EAEVANRVTLHQSGHEHISTLIPKEEYGRVKGAIFNLGYLPGGDKSIVTQSQTTIKAIDS 126

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGI 162
           L   M   G+    + +        R    
Sbjct: 127 LLELMPKGGMIVLVIYHGHAEGAAERDHLR 156


>gi|152992522|ref|YP_001358243.1| hypothetical protein SUN_0928 [Sulfurovum sp. NBC37-1]
 gi|151424383|dbj|BAF71886.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           V+ LL+P PG+ ILDA  G G  +    + G+ VI +D     V   ++   + +     
Sbjct: 214 VVDLLDPKPGEKILDAGCGEGALAEEIVRRGAEVIGVDLSAEMVDACRDRWIEAQVCSVT 273

Query: 88  FQATFSQLQDYVPDKGVDGV 107
                        +  +  V
Sbjct: 274 DLPWHEAFDAVFSNATLHWV 293


>gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 198

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +    A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRRSQYAKQIEFC 118


>gi|47093774|ref|ZP_00231523.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|254931605|ref|ZP_05264964.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993628|ref|ZP_05275818.1| hypothetical protein LmonocytoFSL_12013 [Listeria monocytogenes FSL
           J2-064]
 gi|47017861|gb|EAL08645.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|293583158|gb|EFF95190.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|328465028|gb|EGF36307.1| hypothetical protein LM1816_09707 [Listeria monocytogenes 1816]
 gi|328474002|gb|EGF44815.1| hypothetical protein LM220_15815 [Listeria monocytogenes 220]
 gi|332312104|gb|EGJ25199.1| Methylase protein [Listeria monocytogenes str. Scott A]
          Length = 192

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|116333701|ref|YP_795228.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
 gi|116099048|gb|ABJ64197.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
          H   LL++ +      PG  ++DAT G G  +           +VI  D    A+   Q+
Sbjct: 11 HT--LLKECVG-----PGATVIDATVGKGNDTVFLANLVGKSGHVIGFDIQQAALDATQQ 63

Query: 77 TM 78
           +
Sbjct: 64 QL 65


>gi|323442030|gb|EGA99666.1| hypothetical protein SAO46_2058 [Staphylococcus aureus O46]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|258424175|ref|ZP_05687057.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257845796|gb|EEV69828.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|77408629|ref|ZP_00785363.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
 gi|77172747|gb|EAO75882.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +VI         + LDAT G G  +    K    V A D    A++  +  + +    
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  +      +   +F+LG 
Sbjct: 68  NAELILDGHENLEQYVHTPLRAAIFNLGY 96


>gi|22537547|ref|NP_688398.1| hypothetical protein SAG1400 [Streptococcus agalactiae 2603V/R]
 gi|25011512|ref|NP_735907.1| hypothetical protein gbs1470 [Streptococcus agalactiae NEM316]
 gi|76787418|ref|YP_330041.1| hypothetical protein SAK_1433 [Streptococcus agalactiae A909]
 gi|76797669|ref|ZP_00779938.1| methyltransferase [Streptococcus agalactiae 18RS21]
 gi|77411510|ref|ZP_00787854.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|22534429|gb|AAN00271.1|AE014256_3 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
 gi|24413051|emb|CAD47129.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562475|gb|ABA45059.1| conserved hypothetical protein [Streptococcus agalactiae A909]
 gi|76586963|gb|EAO63452.1| methyltransferase [Streptococcus agalactiae 18RS21]
 gi|77162436|gb|EAO73403.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|319745348|gb|EFV97662.1| rRNA methylase [Streptococcus agalactiae ATCC 13813]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +VI         + LDAT G G  +    K    V A D    A++  +  + +    
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  +      +   +F+LG 
Sbjct: 68  NAELILDGHENLEQYVHTPLRAAIFNLGY 96


>gi|254564064|ref|YP_003071159.1| hypothetical protein METDI5751 [Methylobacterium extorquens DM4]
 gi|254271342|emb|CAX27354.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79
           P+LL ++I  L   PG   LD   G G GY  +  +     V+AL+ DP  ++  +E + 
Sbjct: 68  PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIAAARERLG 125

Query: 80  D 80
           D
Sbjct: 126 D 126


>gi|331092166|ref|ZP_08340996.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401938|gb|EGG81512.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
             G+  +DAT G G  +    ++      V A D    A+   +E + + K
Sbjct: 18 VKEGETCVDATAGNGNDTLLLAELVGEKGKVYAFDIQEQALRRTKERLEEKK 69


>gi|82751349|ref|YP_417090.1| hypothetical protein SAB1621 [Staphylococcus aureus RF122]
 gi|82656880|emb|CAI81310.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +   +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIAAAIFNLGY 101


>gi|283781585|ref|YP_003372340.1| methyltransferase type 11 [Pirellula staleyi DSM 6068]
 gi|283440038|gb|ADB18480.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068]
          Length = 772

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 34  PAPGKVILD--ATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
             PG  +LD     G G +        +    VI +D  PFA+   Q    D +++    
Sbjct: 237 IRPGDTVLDAACGLGYGSH---LLARNTKAERVIGIDGSPFAIDYAQANFTDERQRTEFR 293

Query: 89  QATFSQLQDYVPDKGVDGVV 108
                +    + D  V  VV
Sbjct: 294 VGFLPECLAPIADHSVHAVV 313


>gi|325265811|ref|ZP_08132497.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982449|gb|EGC18075.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 24  LLEKVI----ALLN--PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSC 73
           +L  +I    +LL      G  ++D T G  G+              V A D    A+  
Sbjct: 24  MLADIIPFAHSLLRVHIREGDCVMDGTAGN-GHDTLLLAQCVGETGRVFAFDIQAAAIEA 82

Query: 74  GQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +  + ++    + +L Q        Y+    +   VF+ G 
Sbjct: 83  TRARLAEHGLLPRVTLIQDGHQHAAQYIRQ-PLRAAVFNFGY 123


>gi|308068128|ref|YP_003869733.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
 gi|305857407|gb|ADM69195.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQ----FS 86
             PG   +DAT G G  +    K       V   D    A+ C +  + +         S
Sbjct: 18  VQPGDTAIDATVGTGADTLFLAKAAGKRGRVYGFDIQQEALHCARRRLEENASPSLAEVS 77

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +  Q+++ VPD     V  V+F+LG 
Sbjct: 78  LQLQSHEQMREAVPDMLHGKVAAVMFNLGY 107


>gi|169334036|ref|ZP_02861229.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258753|gb|EDS72719.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM
           17244]
          Length = 185

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-E 83
           +I       G ++LD T G G  +    K       V A D    AV   ++ + + +  
Sbjct: 12  IIDN-KVVSGNIVLDMTMGNGNDTLYLSKKVGEKGKVYAFDIQSQAVKNTKKLLDENRIN 70

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L   +   + +YV D  VD  V++LG 
Sbjct: 71  NAVLINDSHENVLNYVTD-KVDFAVYNLGY 99


>gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 276

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 46  GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           G GG +R+    G+  VIA++RD  A++   E    Y  +  +  A    +      +  
Sbjct: 54  GPGGLTRALLDAGARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEMP 113

Query: 105 DGVVFDLGVS 114
             +V +L  +
Sbjct: 114 RRIVANLPYN 123


>gi|55821621|ref|YP_140063.1| rRNA methylase [Streptococcus thermophilus LMG 18311]
 gi|116628334|ref|YP_820953.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus LMD-9]
 gi|55737606|gb|AAV61248.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus LMG 18311]
 gi|116101611|gb|ABJ66757.1| SAM-dependent methyltransferase [Streptococcus thermophilus LMD-9]
 gi|312278960|gb|ADQ63617.1| RRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus ND03]
          Length = 182

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         +++DAT G G  +     +   V A D    A+    + + D   +
Sbjct: 13  LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D+   + +   +F+LG 
Sbjct: 68  NTELILDGHENLDHYVREPIRAAIFNLGY 96


>gi|282911386|ref|ZP_06319188.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282325081|gb|EFB55391.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|312437781|gb|ADQ76852.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPVGHVYGFDIQDLALENTRDKVKDFNHVSLVKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +L+P PG+ ++D     GG   +     K    + A D D   +   ++ +R    + + 
Sbjct: 245 ILSPEPGETVVDLAAAPGGKTAHMAELMKNEGKIYAFDVDSERIKRMKQILRWAGVEIAE 304

Query: 88  FQA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +     +  +++ +K  D V+ D   +S      +    ++
Sbjct: 305 VKKLDGRKAPEFLGEKIADRVLLDAPCTSDGTIAKNPELRWR 346


>gi|227485460|ref|ZP_03915776.1| rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236590|gb|EEI86605.1| rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 180

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 42  DATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           D T G G  S+   +    + +   D    A    ++ + D  ++F       + ++ Y+
Sbjct: 24  DLTVGTGKDSKYILENTEVARLYGFDIQKEAEKEAKKLIGD-DQRFIFHLDNHANIEKYI 82

Query: 100 PDKGVDGVVFDLGV 113
            + G+D  +++LG 
Sbjct: 83  KE-GLDLAIYNLGY 95


>gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 255

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +    A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRRSQYAKQIEFC 118


>gi|15615847|ref|NP_244151.1| hypothetical protein BH3285 [Bacillus halodurans C-125]
 gi|10175908|dbj|BAB07004.1| BH3285 [Bacillus halodurans C-125]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQ 89
           PG + +D T G  G+   F         +V   D    A+    + +++  + E+ +LF 
Sbjct: 20  PGSIAVDGTTGN-GHDTVFLAKLVGETGHVYGFDVQEQAIHQTNKRVKELGFPERVTLFH 78

Query: 90  ATFSQLQDY---VPDKGVDGVVFDLGV 113
           A+  Q+           +   +F+LG 
Sbjct: 79  ASHEQVATLIPPDQHPNIKAAIFNLGY 105


>gi|254832065|ref|ZP_05236720.1| methylase protein [Listeria monocytogenes 10403S]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|47097507|ref|ZP_00235048.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829466|ref|ZP_05234153.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898171|ref|ZP_05258095.1| methylase protein [Listeria monocytogenes J0161]
 gi|254912336|ref|ZP_05262348.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936663|ref|ZP_05268360.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47014122|gb|EAL05114.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601881|gb|EEW15206.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609259|gb|EEW21867.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293590317|gb|EFF98651.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|103488037|ref|YP_617598.1| methyltransferase type 11 [Sphingopyxis alaskensis RB2256]
 gi|98978114|gb|ABF54265.1| Methyltransferase type 11 [Sphingopyxis alaskensis RB2256]
          Length = 228

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           +  L P  G+ ILD   G G  S +        G+ +I LD DP  +   +   R    +
Sbjct: 45  LEQLAPRNGETILDVGCGTG--SFALLMKCRAPGARIIGLDPDPDVLHRAEAKARKAGVE 102

Query: 85  FSLFQATFSQLQDY 98
               Q   S     
Sbjct: 103 IEWRQGFASDAATL 116


>gi|325663507|ref|ZP_08151917.1| hypothetical protein HMPREF0490_02658 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470406|gb|EGC73637.1| hypothetical protein HMPREF0490_02658 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 187

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
            G + +DAT G  G+              VIA D    AV   +  +      E+  +  
Sbjct: 20  EGDICIDATAGN-GHDTLLLAELVGASGRVIAFDIQEQAVQETKRKIDKCGYAERTEVVL 78

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
            +   +  Y  +  V  + F+ G 
Sbjct: 79  DSHVHMGAYAKENTVSCITFNFGY 102


>gi|194098054|ref|YP_002001102.1| hypothetical protein NGK_0477 [Neisseria gonorrhoeae NCCP11945]
 gi|254493236|ref|ZP_05106407.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594375|ref|ZP_06128542.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596371|ref|ZP_06130538.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598499|ref|ZP_06132666.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268600852|ref|ZP_06135019.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603157|ref|ZP_06137324.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681638|ref|ZP_06148500.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683866|ref|ZP_06150728.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686108|ref|ZP_06152970.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044339|ref|ZP_06570048.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193933344|gb|ACF29168.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512276|gb|EEH61621.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547764|gb|EEZ43182.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268550159|gb|EEZ45178.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582630|gb|EEZ47306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268584983|gb|EEZ49659.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587288|gb|EEZ51964.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621922|gb|EEZ54322.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624150|gb|EEZ56550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626392|gb|EEZ58792.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011233|gb|EFE03229.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317163791|gb|ADV07332.1| hypothetical protein NGTW08_0360 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LD T G  G+   F          V A D  P A++  +  ++
Sbjct: 11  LLREAL-----PEGGNALDGTAGN-GHDTLFLAQTAGNRGKVWAFDIQPQALNNTRCRLQ 64

Query: 80  DYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +       L       L+ Y+P+  +D  VF+ G 
Sbjct: 65  EAGYSNVRLILDGHENLKQYIPE-PLDAAVFNFGW 98


>gi|77413361|ref|ZP_00789555.1| conserved hypothetical protein [Streptococcus agalactiae 515]
 gi|77160603|gb|EAO71720.1| conserved hypothetical protein [Streptococcus agalactiae 515]
          Length = 188

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +VI         + LDAT G G  +    K    V A D    A++  +  +      
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTGQGIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L+ YV    +   +F+LG 
Sbjct: 68  NVELILDGHENLEQYVH-TPLRAAIFNLGY 96


>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
 gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
          Length = 426

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    S V+A+D D   +   QE ++  K   
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        QD+   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
 gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    S V+A+D D   +   QE ++  K   
Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        QD+   +  D ++ D   S+  +        +
Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 348


>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
 gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    S V+A+D D   +   QE ++  K   
Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        QD+   +  D ++ D   S+  +        +
Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 348


>gi|159480252|ref|XP_001698198.1| hypothetical protein CHLREDRAFT_41764 [Chlamydomonas reinhardtii]
 gi|158273696|gb|EDO99483.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 221

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 30 ALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
            L+PAPG  ++D         T     +  +  +    VIA D+DP  ++  +      
Sbjct: 13 HALSPAPGWTVVDCCAAPGNKTT-----HLAAIMRNKGRVIAFDKDPKRLARLKANAERT 67

Query: 82 K 82
           
Sbjct: 68 G 68


>gi|332188118|ref|ZP_08389848.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17]
 gi|332011832|gb|EGI53907.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17]
          Length = 228

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFS 86
          +A L P  G+ ++D   G G ++    +      VI LD D  A+   +      +    
Sbjct: 34 LAALAPKAGETVVDVGCGTGSFALMLKQAEPRTQVIGLDPDAEALDIARHKAAVRRADID 93

Query: 87 LFQAT 91
            Q  
Sbjct: 94 WRQGF 98


>gi|118579003|ref|YP_900253.1| putative rRNA methylase [Pelobacter propionicus DSM 2379]
 gi|118501713|gb|ABK98195.1| putative rRNA methylase [Pelobacter propionicus DSM 2379]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
             PG + +DAT G  G+              V A D    A+S     +      E+  L
Sbjct: 27  IQPGDLAVDATCGN-GHDTLLLANLVGPSGRVWAFDVQERAISATSRRLGQAGMAERVEL 85

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                  L + VP   V GV+F+LG 
Sbjct: 86  ILGGHESLAEQVP-TPVRGVMFNLGY 110


>gi|312864561|ref|ZP_07724792.1| putative rRNA methylase [Streptococcus downei F0415]
 gi|311099688|gb|EFQ57901.1| putative rRNA methylase [Streptococcus downei F0415]
          Length = 182

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL ++ IA          +DAT G G  +     +   V A D    A++  QE +    
Sbjct: 16  VLAKEAIA----------VDATMGNGNDTAFLAGLVKKVYAFDVQKQALAKTQERLASQH 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              +       +  D    + +   +F+LG 
Sbjct: 66  LTNAELILDGHENLDKYVSEPIRAAIFNLGY 96


>gi|187735461|ref|YP_001877573.1| rRNA methylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425513|gb|ACD04792.1| putative rRNA methylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 235

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK 82
           PG  ++DAT G  G+   F          V A D    A+   +E +    
Sbjct: 67  PGDAVVDATAGN-GHDTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEG 116


>gi|329922238|ref|ZP_08277940.1| putative rRNA methylase [Paenibacillus sp. HGF5]
 gi|328942275|gb|EGG38545.1| putative rRNA methylase [Paenibacillus sp. HGF5]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-------EQ 84
            PG + LDAT G G  +    K       V A D    A+   +E +             
Sbjct: 19  RPGDIALDATAGTGADTLYLAKCTGSKGKVYAFDIQEQALQLTRERLDKEPTGTLAEVSL 78

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                +   +    +    +  ++F+LG 
Sbjct: 79  LLQSHSLMRECVPEIEHGRMGAIMFNLGY 107


>gi|242091049|ref|XP_002441357.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor]
 gi|241946642|gb|EES19787.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor]
          Length = 272

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 13/93 (13%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK------MGSNVIALDRDPFAVSCGQETMR------DY 81
              G  ++DAT G G  + +  K          V  +D    A+      ++        
Sbjct: 96  VQKGDTVVDATCGNGNDTLALLKMVADETAQGRVYGMDIQDSAIESTSSFLKMSVDDDHQ 155

Query: 82  KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGV 113
           +    LF    S++++    D  V  V F+LG 
Sbjct: 156 RGLVKLFPICHSRMEEIVPKDAPVRLVAFNLGY 188


>gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
 gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
          Length = 281

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 42  DATFGA--------GGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           D T G+        GG +R+    G+  VIA++RD  A++   E    Y  +  +  A  
Sbjct: 42  DLTVGSVIEIGPGPGGLTRALLDAGARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADA 101

Query: 93  SQLQDYVPDKGVDGVVFDLGVS 114
             +      +    +V +L  +
Sbjct: 102 MTVDAAELGEVPRRIVANLPYN 123


>gi|168187189|ref|ZP_02621824.1| possible rRNA methylase [Clostridium botulinum C str. Eklund]
 gi|169294843|gb|EDS76976.1| possible rRNA methylase [Clostridium botulinum C str. Eklund]
          Length = 189

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           L ++ IA+     G + +DAT G G  +  F          V + D    A+   ++ + 
Sbjct: 12  LAKE-IAIKKLQEGDIAVDATMGNGNDTV-FLARLVGESGKVYSFDVQSTAIENTKKRII 69

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D K   +  L       +  Y+ +  +  V+F+LG 
Sbjct: 70  DNKINTKIELIHDGHENIDKYINE-KLKLVMFNLGY 104


>gi|325690968|gb|EGD32968.1| rRNA methylase [Streptococcus sanguinis SK115]
 gi|325695068|gb|EGD36971.1| rRNA methylase [Streptococcus sanguinis SK150]
          Length = 183

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
          L +V+         +++DAT G  G+   F    +  V A D    AV   ++ + +  
Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQGLAEAD 64


>gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
 gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   GS V+A+D D   +   QE ++  +   
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQRLQLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|313114641|ref|ZP_07800148.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623044|gb|EFQ06492.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 288

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 41  LDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94
           +DAT G GG +   C        V+  D    A++  ++ +        ++ L   + + 
Sbjct: 125 IDATCGNGGDTAFLCGITAPEGKVVGFDVQEAAIASTRKHLEQLGVPAARYELHCQSHAD 184

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           L   V     D V+F+ G 
Sbjct: 185 LLQVVQPGTADAVMFNFGW 203


>gi|297616627|ref|YP_003701786.1| rRNA methylase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144464|gb|ADI01221.1| putative rRNA methylase [Syntrophothermus lipocalidus DSM 12680]
          Length = 193

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           VL+  V+      PG  ++DAT G G  +    ++      V+A+D  P AV   +  ++
Sbjct: 15  VLIHTVVE-----PGDFVVDATCGNGKDTVFLARLVGEKGKVLAIDVQPLAVERTKSLLQ 69

Query: 80  DY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 + +L +   S ++ Y+ +  V   +F+LG 
Sbjct: 70  KEGLGSRVTLVRDDHSLIRHYLRE-PVKAAMFNLGY 104


>gi|312863858|ref|ZP_07724096.1| putative rRNA methylase [Streptococcus vestibularis F0396]
 gi|311101394|gb|EFQ59599.1| putative rRNA methylase [Streptococcus vestibularis F0396]
          Length = 182

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         V +DAT G G  +     +   V A D    A+   ++ + D + +
Sbjct: 13  LAEVLD-----DESVAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLEIE 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D    + +   +F+LG 
Sbjct: 68  NAQLILDGHENLDRYVTEPIRAAIFNLGY 96


>gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
 gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 24  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 83

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 84  VAFDYSKKMIELAKRRQSQYAKQIEFC 110


>gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|238027991|ref|YP_002912222.1| hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1]
 gi|237877185|gb|ACR29518.1| Hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1]
          Length = 186

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           APG  +LD   G G ++R F   G  V+ALDRDP A++
Sbjct: 16 VAPGGAVLDVAAGQGRHARWFASRGHPVLALDRDPAALA 54


>gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
 gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +++I+        V++++ I  L+  PG+ +LD   G G ++    + G  V+ ++ D  
Sbjct: 274 NASINQ-------VMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDA 326

Query: 70  AVSCGQETMR 79
            V  G+E   
Sbjct: 327 MVERGRENAA 336


>gi|70726161|ref|YP_253075.1| hypothetical protein SH1160 [Staphylococcus haemolyticus JCSC1435]
 gi|68446885|dbj|BAE04469.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 186

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
                +++DAT G G  +    +     +V   D    A+    E ++ +          
Sbjct: 18  IKQDSIVIDATCGNGNDTLFLAQQVSNGHVFGFDIQDTAIQSTFEKVKAFNNVTLIQDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
               +  D      +D  +F+LG 
Sbjct: 78  ENIKKHIDIQFKGQIDAAIFNLGY 101


>gi|77405777|ref|ZP_00782862.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
 gi|77175634|gb|EAO78418.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +VI         + LDAT G G  +    K    V A D    A++  +  + +    
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  +      +   +F+LG 
Sbjct: 68  NAELILDGHENLEQYVHTPLREAIFNLGY 96


>gi|210617941|ref|ZP_03291827.1| hypothetical protein CLONEX_04059 [Clostridium nexile DSM 1787]
 gi|210149080|gb|EEA80089.1| hypothetical protein CLONEX_04059 [Clostridium nexile DSM 1787]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           HH + +HV               G + +DAT G G  +   C++      V+A D    A
Sbjct: 14  HHFMENHV-------------KEGDLCIDATAGNGNDTLFLCELVGECGRVLAFDIQKEA 60

Query: 71  VSCGQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           V   ++ +     +++  +F  + +++Q Y  ++ VD +VF+ G 
Sbjct: 61  VENTKKRILEHQMEKRADVFLESHAKMQKYAKEETVDCIVFNFGY 105


>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
 gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    +NV+A+D D   ++   E +     + 
Sbjct: 253 SVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLERLNLEA 312

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        +++   +  D ++ D   S+  +        +
Sbjct: 313 KVICGDARHPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 354


>gi|329769326|ref|ZP_08260742.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325]
 gi|328839129|gb|EGF88714.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG-----QET 77
           LL++VI         +++DAT G G  +    K  +  V A D    A +       +  
Sbjct: 11  LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVFAFDVQNQATTNTNDLLEKNN 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           + D  E        F +      ++ +  VVF+LG 
Sbjct: 66  LADKCEVILDSHENFDK----YIEENIQAVVFNLGY 97


>gi|153004217|ref|YP_001378542.1| type 11 methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152027790|gb|ABS25558.1| Methyltransferase type 11 [Anaeromyxobacter sp. Fw109-5]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 26  EKVIALLNPAPGKVILDATFGAG-GYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD 80
           ++V++ L   PG V  DA  GAG GY              V A+D D   ++  ++  R+
Sbjct: 49  DEVVSALGLRPGDVACDA--GAGPGYFAIRLARAVGPTGRVHAIDVDARMIALLEQRARE 106

Query: 81  YK 82
             
Sbjct: 107 AG 108


>gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489]
 gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489]
          Length = 141

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium
           thermophilum]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|300814939|ref|ZP_07095167.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300510909|gb|EFK38181.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 169

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 27  KVIALL--NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY 81
           +++  +  N   GK  +DAT G G  +    K       V A D    +++  +E  ++ 
Sbjct: 9   EIVDKILKNDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQSINYCKEKFKNI 68

Query: 82  KE--QFSLFQATFSQLQDYVPDKGVDGVV 108
                  +       L+++       G +
Sbjct: 69  SNLEILKISHEFIDILENFDLAIYNLGYL 97


>gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
 gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|15895826|ref|NP_349175.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15025588|gb|AAK80515.1|AE007754_13 Possible rRNA methylase (SAM-dependent methyltransferase
           superfamily), YTQB B.subtilis [Clostridium
           acetobutylicum ATCC 824]
 gi|325509978|gb|ADZ21614.1| putative rRNA methylase (SAM-dependent methyltransferase
           superfamily) [Clostridium acetobutylicum EA 2018]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 35  APGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYKE--QFSLFQ 89
            PG   +D T G G  +       K    V A D    A+   +  +          L +
Sbjct: 20  KPGDTAVDCTAGNGNDTDFLCEIVKDKGRVYAFDIQEKALLSTKRKLEASGNIKIVKLIK 79

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                L  Y+ +  +   VF+LG 
Sbjct: 80  DGHENLDKYIRE-NIKAAVFNLGY 102


>gi|284802054|ref|YP_003413919.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578]
 gi|284995196|ref|YP_003416964.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923]
 gi|284057616|gb|ADB68557.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578]
 gi|284060663|gb|ADB71602.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      +++     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y     V   +F+LG 
Sbjct: 77  VCASHARIPEYTSK-PVRAAIFNLGY 101


>gi|255027475|ref|ZP_05299461.1| hypothetical protein LmonocytFSL_16008 [Listeria monocytogenes FSL
           J2-003]
          Length = 115

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      +++     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y     V   +F+LG 
Sbjct: 77  VCASHARIPEYTSK-PVRAAIFNLGY 101


>gi|224499244|ref|ZP_03667593.1| hypothetical protein LmonF1_05937 [Listeria monocytogenes Finland
           1988]
          Length = 175

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      +++     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y     V   +F+LG 
Sbjct: 77  VCASHARIPEYTSK-PVRAAIFNLGY 101


>gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 429

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81
           ++ + LL P  G+ ILD    A  GG +    ++     V+A+D D   +   +E ++  
Sbjct: 236 QECVELLKPINGEKILD--LCAAPGGKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRL 293

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               ++        + +  ++  D ++ D   S+  +        +
Sbjct: 294 NCHATVKTGDGRHPEHWAENQQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida]
 gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183]
 gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens]
 gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum 70/3]
 gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum V10Sc8a]
 gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Clostridium cf. saccharolyticum K10]
 gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Faecalibacterium prausnitzii L2-6]
 gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [butyrate-producing bacterium SM4/1]
 gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|16800839|ref|NP_471107.1| hypothetical protein lin1771 [Listeria innocua Clip11262]
 gi|16414258|emb|CAC97002.1| lin1771 [Listeria innocua Clip11262]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
              G  ++DAT G  G+             +V+  D    A+   +  + +      +  
Sbjct: 18  VRSGDYVIDATCGN-GHDTLLLAELVGVNGHVLGFDIQQMAIDATKTRLENAGVASQVEL 76

Query: 90  ATFSQ-LQDYVPDKGVDGVVFDLGV 113
              S  L      K V   +F+LG 
Sbjct: 77  VCASHALIPEYATKPVRAAIFNLGY 101


>gi|309791546|ref|ZP_07686045.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
 gi|308226406|gb|EFO80135.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (34%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             L+    + ILD   G G +S    + G  VI LD  P  ++  +    +     +  Q
Sbjct: 38  QALSLRGVETILDLACGGGRHSIELAQRGLTVIGLDASPRVLAHARSRASELDLNATFVQ 97

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                L D      +  +   LG 
Sbjct: 98  GDMRHLTDVGRFDTILIMNSSLGF 121


>gi|218232477|ref|YP_002369548.1| hypothetical protein BCB4264_A4862 [Bacillus cereus B4264]
 gi|218160434|gb|ACK60426.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ---- 84
               G   +DAT G  G+   F          V   D    A+      +++ K      
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 75

Query: 85  -FSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
                  T   +        V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|167628430|ref|YP_001678929.1| sam-dependent methyltransferase, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167591170|gb|ABZ82918.1| sam-dependent methyltransferase, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM 78
          L +V+      PG   +DAT G  G+   F       G ++ A D    A+      +
Sbjct: 15 LAEVLE-----PGDFAIDATAGN-GHDTLFLARQVLPGGDLWAFDIQEAAIDATARRL 66


>gi|73662312|ref|YP_301093.1| hypothetical protein SSP1003 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494827|dbj|BAE18148.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 186

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 36  PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
              +++DAT G G  +    +     NV A D    A+   Q          ++ Q + +
Sbjct: 20  DDSIVIDATCGNGNDTHFLAQQVPNGNVYAFDIQDEAIKQTQ-LKIHDFNNVTIVQDSHA 78

Query: 94  QLQDYVPDKG---VDGVVFDLGV 113
            +Q Y+P+     +D  +F+LG 
Sbjct: 79  NIQSYIPNYQQGKIDAAIFNLGY 101


>gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|229152949|ref|ZP_04281131.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550]
 gi|228630562|gb|EEK87209.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550]
          Length = 177

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ K  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 62

Query: 87  LFQATFSQLQDY---VPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L           V G +F+LG        I       +      L   M+  
Sbjct: 63  LVHDSHDTLLSILPGDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLDVMAPE 121

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 122 GIIVLVIYHGHPEGRVERDAVLKFAEE 148


>gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium]
 gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium]
 gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium]
          Length = 184

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            ++ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|172058288|ref|YP_001814748.1| putative rRNA methylase [Exiguobacterium sibiricum 255-15]
 gi|171990809|gb|ACB61731.1| putative rRNA methylase [Exiguobacterium sibiricum 255-15]
          Length = 196

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81
          ++++  +    G  ++D T G  G+   F          VIA D    A+      ++  
Sbjct: 11 KELLESV-IHEGDCVVDMTAGN-GHDTHFLAEQVGPSGRVIAFDVQEQAIEETTRRLQAA 68

Query: 82 KEQFSLFQATFSQLQ 96
               +     S + 
Sbjct: 69 HVFDWVDLYHESHIH 83


>gi|167462258|ref|ZP_02327347.1| conserved protein YtqB [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383956|ref|ZP_08057686.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151433|gb|EFX44620.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 196

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 10/91 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ----- 84
              PG+ ++DAT G G  +     +      V   D    A+   ++ +           
Sbjct: 17  KVQPGESVIDATAGNGVDTLFLASLVGPSGKVYGFDIQKEAIRHTRDRLAQELPSSALYV 76

Query: 85  --FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                     +          +   +F+LG 
Sbjct: 77  TLIQDSHHRLTDYLPEQEQGKIAAAMFNLGY 107


>gi|315282619|ref|ZP_07870989.1| methylase protein [Listeria marthii FSL S4-120]
 gi|313613730|gb|EFR87504.1| methylase protein [Listeria marthii FSL S4-120]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      + +     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLENAGASSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y     V   +F+LG 
Sbjct: 77  VCASHARIPEYTSK-PVRAAIFNLGY 101


>gi|46907893|ref|YP_014282.1| hypothetical protein LMOf2365_1686 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46881162|gb|AAT04459.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDETKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|16803702|ref|NP_465187.1| hypothetical protein lmo1662 [Listeria monocytogenes EGD-e]
 gi|224503672|ref|ZP_03671979.1| hypothetical protein LmonFR_14400 [Listeria monocytogenes FSL
           R2-561]
 gi|16411098|emb|CAC99740.1| lmo1662 [Listeria monocytogenes EGD-e]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      + +     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y     V   +F+LG 
Sbjct: 77  VCASHARIPEYTSK-PVRAAIFNLGY 101


>gi|47565176|ref|ZP_00236219.1| SAM-dependent methyltransferase [Bacillus cereus G9241]
 gi|47557962|gb|EAL16287.1| SAM-dependent methyltransferase [Bacillus cereus G9241]
          Length = 190

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLDVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|167618631|ref|ZP_02387262.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           Bt4]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +         NV  +D DP AV   ++     +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGNVTGIDIDPQAVEAARQNSEHNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|144900150|emb|CAM77014.1| SAM-dependent methyltransferases [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 176

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           APG  +LD   G G ++R     G  V ALDRD  
Sbjct: 21 IAPGGAVLDLASGGGRHARLLLDRGHAVTALDRDIT 56


>gi|196250012|ref|ZP_03148707.1| putative rRNA methylase [Geobacillus sp. G11MC16]
 gi|196210526|gb|EDY05290.1| putative rRNA methylase [Geobacillus sp. G11MC16]
          Length = 190

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LLE+ +       G + +DAT G  G+ +    ++     +V   D  P A++     + 
Sbjct: 13  LLERAVT-----EGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVF 109
           +    ++ +LFQ + S+L   +P      +  
Sbjct: 67  EQGLHDRVTLFQQSHSELLTALPSDVYGRIAG 98


>gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting
           protein, putative [Trypanosoma cruzi]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
            +LD   G GG +    ++   V+A+D DP A+   ++ +  Y   ++ S +   F  L+
Sbjct: 63  CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122

Query: 97  DYVPDKGVDGVV 108
               +       
Sbjct: 123 LDNMEFDAVHCS 134


>gi|326202114|ref|ZP_08191984.1| rRNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325987909|gb|EGD48735.1| rRNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 188

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81
            ++++ +    G  ++DAT G  G+   F       G  V + D    A++  +  +   
Sbjct: 12  HEIVSRVVCN-GDTVVDATAGN-GHDTVFLARLVGTGGQVYSFDIQESALNTTKNRLESE 69

Query: 82  K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               + +L       +     +K +   +F+LG 
Sbjct: 70  NLLSRVNLIHDGHQNMMK-HVNKPIKAAMFNLGY 102


>gi|138896384|ref|YP_001126837.1| hypothetical protein GTNG_2747 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267897|gb|ABO68092.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 191

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LLE+ +       G + +DAT G  G+ +    ++     +V   D  P A++     + 
Sbjct: 13  LLERAVT-----EGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVF 109
           +    ++ +LFQ + S+L   +P      +  
Sbjct: 67  EQGLLDRVTLFQQSHSELLTALPSDVYGRIGG 98


>gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
            +LD   G GG +    ++   V+A+D DP A+   ++ +  Y   ++ S +   F  L+
Sbjct: 63  CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +D + FD    S          +        +R
Sbjct: 123 -------LDNMEFDALHCSPPWGGPLYAAAPSFDMENSLR 155


>gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
            +LD   G GG +    ++   V+A+D DP A+   ++ +  Y   ++ S +   F  L+
Sbjct: 63  CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +D + FD    S          +        +R
Sbjct: 123 -------LDNMEFDALHCSPPWGGPLYAAAPSFDMENSLR 155


>gi|225458633|ref|XP_002282801.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 780

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
            +I+D   G GG +  F +   +VIA+D DP  +   Q     Y 
Sbjct: 613 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYG 657


>gi|319637816|ref|ZP_07992582.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102]
 gi|317400971|gb|EFV81626.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LDAT G  G+              V A D    A++  Q  ++
Sbjct: 13  LLRQAL-----KAGGRALDATAGN-GHDTLLLAQLVGETGKVWAFDVQSKALAQTQGRLK 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     + +L       L  Y+ +  +D  VF+ G 
Sbjct: 67  ENGVDGRVALIHDGHENLSSYIDE-PLDAAVFNFGW 101


>gi|227500586|ref|ZP_03930635.1| rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227217291|gb|EEI82633.1| rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKV--ILDATFGAGGY-SRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           L+++++         +   +D T G  G+ S     +     +IA D    A       +
Sbjct: 8   LVKEIL----IRKKNINLAVDMTAGN-GHDSAFILDVLGAKKLIAFDIQEEARENTLNLL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 FS    + + + +Y+ +  +D  V++LG 
Sbjct: 63  GPRDN-FSFILDSHAHIDNYIKE-KIDLAVYNLGY 95


>gi|168029694|ref|XP_001767360.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681424|gb|EDQ67851.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 2/133 (1%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
            G +I+DA  G GG +  F   G +VIA+D DP  +   +     Y       +      
Sbjct: 48  SGGLIVDAFTGVGGNAIQFALRGDHVIAIDIDPLKIEYARHNAAIYG-VVDHIEFIVGDF 106

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKD 155
               P+   D +              +  F                ++ +   N A    
Sbjct: 107 FKIAPNLKADSIFLSPPWGGPSYSDVE-KFDLHTMIQPLDGFKLFQVAQAVAPNMALFLP 165

Query: 156 LTRILGILGEEKQ 168
               L  L E   
Sbjct: 166 RNVDLDQLAELSW 178


>gi|237748134|ref|ZP_04578614.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379496|gb|EEO29587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + E V+ LL+P PG+ ILD   G G  +    KMG  V+A+D +  AV   ++   D + 
Sbjct: 23  MGEPVLKLLDPKPGERILDMGCGLGVLAEEMVKMGCEVVAIDVNSQAVEATRQRNVDARL 82

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
             +       +      +  +  +
Sbjct: 83  MNAEAMTFRDEFDAVFSNASLHWM 106


>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
 gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    + ++    + 
Sbjct: 235 SINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQRLNLKA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        QD+   +  D ++ D   S+  +        +
Sbjct: 295 KVICGDARNPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|302142307|emb|CBI19510.3| unnamed protein product [Vitis vinifera]
          Length = 683

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
            +I+D   G GG +  F +   +VIA+D DP  +   Q     Y 
Sbjct: 516 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYG 560


>gi|167772608|ref|ZP_02444661.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM
           17241]
 gi|167665086|gb|EDS09216.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM
           17241]
          Length = 190

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG   +DAT G  G+  +F         +V+A D    AV    E +           
Sbjct: 20  VKPGDFCIDATAGR-GHDTAFLCSLVGGSGHVLAFDIQQEAVDSTTELLHTRGFAGIGRA 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + +  Y   + V  + F+ G 
Sbjct: 79  VLDSHANMAAYAAPESVSCITFNFGW 104


>gi|171915273|ref|ZP_02930743.1| YtqB [Verrucomicrobium spinosum DSM 4136]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 30  ALLNPA--PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKE 83
           A+L P   PG +++DAT G  G+   F          V A D    A+   +  +R+   
Sbjct: 21  AILEPRLLPGDLVVDATAGN-GHDTLFLAQRVLPEGQVFAFDIQADAIQQTEIRLREAGV 79

Query: 84  QFSLF------QATFSQLQDYVPDKGVDGVVFDLGV 113
             S          T S        + +   +F+LG 
Sbjct: 80  DMSRITLHVAGHETLSAALPTGVHQRLRLCMFNLGY 115


>gi|206560530|ref|YP_002231295.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|198036572|emb|CAR52469.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          G  +LD   G G ++R F   G  V+ALDRDP A++  +  
Sbjct: 32 GGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAALRAI 72


>gi|259046845|ref|ZP_05737246.1| rRNA methylase [Granulicatella adiacens ATCC 49175]
 gi|259036468|gb|EEW37723.1| rRNA methylase [Granulicatella adiacens ATCC 49175]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
              + +DAT G  G+   F        S +++ D    A+   ++ ++ +    + +   
Sbjct: 21  ENGLFIDATAGN-GHDTLFLAQHIDSTSKILSFDIQETAILQTRQLLQKHDLAPKVTCIL 79

Query: 90  ATFSQLQDY-VPDKGVDGVVFDLGV 113
            + + + +Y   D+ V   +F+LG 
Sbjct: 80  DSHANISNYLEQDERVRLAIFNLGY 104


>gi|290579949|ref|YP_003484341.1| hypothetical protein SmuNN2025_0423 [Streptococcus mutans NN2025]
 gi|254996848|dbj|BAH87449.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         + +DAT G G  +     +   V A D    A+   +E + +    
Sbjct: 13  LSQVLD-----KNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLENLGFN 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                    Q  D   D  +   +F+LG 
Sbjct: 68  NVQLILDGHQTIDKYVDGPIRAAIFNLGY 96


>gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
 gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G+++
Sbjct: 32  EKNAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|253699523|ref|YP_003020712.1| rRNA methylase [Geobacter sp. M21]
 gi|251774373|gb|ACT16954.1| putative rRNA methylase [Geobacter sp. M21]
          Length = 195

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
          PG ++LDAT G G  +    ++   G  V A D  P A++  +  +    
Sbjct: 24 PGDLVLDATCGNGFDTLLLAELTGEGGEVWAFDVQPRAIAATRALLEREG 73


>gi|300766053|ref|ZP_07076022.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
 gi|300513255|gb|EFK40333.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
          Length = 192

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             PG   +DAT G  G+             +V+  D    AV   +  + +      +  
Sbjct: 18  VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQMEL 76

Query: 90  ATFSQLQ-DYVPDKGVDGVVFDLGV 113
              S  +      + V   +F+LG 
Sbjct: 77  VCASHARIPAYTSRPVRAAIFNLGY 101


>gi|299535356|ref|ZP_07048678.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298729117|gb|EFI69670.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 191

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFS-- 86
           N   G  ++DAT G  G+   F          V A D    AV      + D+  +    
Sbjct: 17  NIEEGDTVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLLRLLDHGLEHRAL 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +      ++  +V    V   +F+LG 
Sbjct: 76  VLNKGHEEVTQFVHK-PVTAAIFNLGY 101


>gi|30022820|ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
 gi|29898379|gb|AAP11652.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
          Length = 190

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ---- 84
               G   +DAT G  G+   F          V   D    A+      +++ +      
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 85  -FSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
                  T   +        V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|326434167|gb|EGD79737.1| hypothetical protein PTSG_10720 [Salpingoeca sp. ATCC 50818]
          Length = 183

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGS-NVIA 63
            ++ ++A  H    H P L +KV+   N    G   LD T GAG + R   K G+ N+I+
Sbjct: 103 ARSKNAAPVH----HFPALYKKVVKGFNQTFRGNTHLDMTLGAGNHVRHVFKAGAQNIIS 158

Query: 64  LDRDPFAVSCGQ 75
            D D   +   Q
Sbjct: 159 ADGDDSVIDTAQ 170


>gi|251795313|ref|YP_003010044.1| rRNA methylase [Paenibacillus sp. JDR-2]
 gi|247542939|gb|ACS99957.1| putative rRNA methylase [Paenibacillus sp. JDR-2]
          Length = 192

 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84
            PG +++DAT G G  +    +       V A D    A+    E +R  +E+
Sbjct: 18 VQPGDIVIDATAGGGVDTLKLAELVGARGTVHAFDIQQDALDRTLERLRPLEER 71


>gi|257076787|ref|ZP_05571148.1| methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQ- 84
           ++  ++  P  VI+D   G G YS+ F        V A++R+P  +   Q  + + K   
Sbjct: 19  IVEKMDLKPDDVIIDMGAGDGFYSKLFADKLKNGKVYAIERNPDVLPHLQRNLMEMKNFE 78

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
                     ++ +        V  D+      ID   R
Sbjct: 79  VVNENMCHVDIKGF-NKIFFSTVFHDIECREDIIDFMIR 116


>gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
 gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           kodakarensis KOD1]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L P PG+ ++D     GG   +     +    + A D D   +   +E ++    E   +
Sbjct: 246 LAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSARIKRMKEVLKRTGVEIAEV 305

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +A      + + ++  D V+ D   +S      +    ++
Sbjct: 306 IKADGRNAPELLGEEIADRVLLDAPCTSDGTIAKNPELRWR 346


>gi|304314357|ref|YP_003849504.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
          marburgensis str. Marburg]
 gi|302587816|gb|ADL58191.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
          marburgensis str. Marburg]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
          +P  G   +D   G GG +    +    V A+D+ P A+S  +  ++ + 
Sbjct: 30 DPGKGDTAVDVGCGTGGVTLELSRRAGRVYAIDKSPDAISTTEMNLKKHG 79


>gi|78043668|ref|YP_360801.1| hypothetical protein CHY_1982 [Carboxydothermus hydrogenoformans
          Z-2901]
 gi|77995783|gb|ABB14682.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
          Z-2901]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
          L++V+       G V +DAT G G  +            V A D    A+   ++ +++ 
Sbjct: 15 LQEVVQA-----GDVAVDATAGNGNDTLFLAHRVGENGKVYAFDIQEQALKITEQKLKEA 69

Query: 82 K 82
           
Sbjct: 70 G 70


>gi|154253151|ref|YP_001413975.1| type 11 methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157101|gb|ABS64318.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 21  VPVLLEK------VIALLNPAPGKVILDATFGAG-GYSRSFCKM----GSNVIALDRDPF 69
           + V+  +      V+  L    G+ ++D   GAG G S++        G  +I +D DP 
Sbjct: 23  IAVMTREKRWRPLVVNALALQTGETVVD--IGAGTG-SQAILLKQAVPGIRIIGIDPDPD 79

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            ++  +        +    Q    +       +  D VV  L
Sbjct: 80  VLAIARAKAEAAAVEVDWRQGFGDEADQIAGSEIADAVVSSL 121


>gi|225011697|ref|ZP_03702135.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004200|gb|EEG42172.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   +NP PG  I+DA  GAGG   +  +  +   N+IA+D
Sbjct: 216 VSHWVNPKPGMKIIDACAGAGGKTLHMAALMENKGNIIAID 256


>gi|315303476|ref|ZP_07874063.1| methylase protein [Listeria ivanovii FSL F6-596]
 gi|313628158|gb|EFR96704.1| methylase protein [Listeria ivanovii FSL F6-596]
          Length = 191

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
             PG  ++DAT G  G+              V+  D    A+   +  +       Q +L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGYVLGFDIQQVAIDATRTRLENAAVSSQVNL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y  +  V   +F+LG 
Sbjct: 77  ICASHATIPEYATN-PVRAAIFNLGY 101


>gi|322516162|ref|ZP_08069095.1| rRNA methylase [Streptococcus vestibularis ATCC 49124]
 gi|322125338|gb|EFX96693.1| rRNA methylase [Streptococcus vestibularis ATCC 49124]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         + +DAT G G  +     +   + A D    A+   ++ + D + +
Sbjct: 13  LAEVLD-----DESIAVDATMGNGNDTAFLAGLAKKIYAFDVQEQALEKTRQRLSDLEIE 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D    + +   +F+LG 
Sbjct: 68  NAQLILDGHENLDRYVTEPIRAAIFNLGY 96


>gi|83719303|ref|YP_441708.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           E264]
 gi|167580522|ref|ZP_02373396.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           TXDOH]
 gi|123537576|sp|Q2SZE1|PRMA_BURTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|83653128|gb|ABC37191.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           E264]
          Length = 300

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +         NV  +D DP AV   ++     +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGNVTGIDIDPQAVEAARQNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|210622939|ref|ZP_03293444.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275]
 gi|210153905|gb|EEA84911.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275]
          Length = 193

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88
              G V +DAT G G  +            V A D    A+   ++ ++  +++++  L 
Sbjct: 22  IGEGDVCIDATMGNGYDTVFLAEIVGENGKVYAFDVQEEAIKSTEKKVKKLEFEDRVELI 81

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                 + +YV D  +   VF+LG 
Sbjct: 82  LDGHENISNYVKD-SIKCAVFNLGY 105


>gi|52140754|ref|YP_086075.1| SAM-dependent methyltransferase [Bacillus cereus E33L]
 gi|51974223|gb|AAU15773.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           cereus E33L]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIIGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   G +V+A+D D   +    + ++      
Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        + +      D ++ D   S+  +        +
Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
 gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   G +V+A+D D   +    + ++      
Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        + +      D ++ D   S+  +        +
Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|118479881|ref|YP_897032.1| SAM-dependent methyltransferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043789|ref|ZP_03111026.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225866741|ref|YP_002752119.1| hypothetical protein BCA_4875 [Bacillus cereus 03BB102]
 gi|118419106|gb|ABK87525.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           thuringiensis str. Al Hakam]
 gi|196025125|gb|EDX63795.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225787347|gb|ACO27564.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
 gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82
           V+ LL+P PG+ ++D     GG   ++ +  +    + A+DRD   +   +         
Sbjct: 224 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGAS 283

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E      A              D V+ D+  + M +     G  +++S 
Sbjct: 284 EMVEAETADLRAWAARPEPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSM 332


>gi|18311883|ref|NP_558550.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum
          aerophilum str. IM2]
 gi|48428122|sp|Q8ZZA9|CBIT_PYRAE RecName: Full=Probable cobalt-precorrin-6Y
          C(15)-methyltransferase [decarboxylating]
 gi|18159297|gb|AAL62732.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT)
          [Pyrobaculum aerophilum str. IM2]
          Length = 196

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 28 VIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           ++ L    G  ++D   G G  S         GS V A+D+DP AV   ++    + 
Sbjct: 32 ALSKLRLIKGGTLVDVGCGTGTISVEAALIMGEGSKVYAIDKDPLAVEITKKNAAKFG 89


>gi|228477135|ref|ZP_04061773.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126]
 gi|228251154|gb|EEK10325.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL ++ +A          +DAT G G  +     +   V A D    A+   ++ + D +
Sbjct: 16  VLDDESVA----------VDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLE 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            + +       +  D+   + +   +F+LG 
Sbjct: 66  IENAELILDGHENLDHYVTEPIRAAIFNLGY 96


>gi|111224401|ref|YP_715195.1| putative methyltransferase [Frankia alni ACN14a]
 gi|111151933|emb|CAJ63655.1| Putative methyltransferase [Frankia alni ACN14a]
          Length = 281

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
            PV + +++    P P  V LDA  G G Y+      G  VI +DR P  ++  +  +  
Sbjct: 63  EPV-VREIVD---PLPVGVALDAACGTGRYAEFLAGRGHRVIGVDRSPDMLARARTRVPQ 118

Query: 81  YKEQFSLFQ 89
            +       
Sbjct: 119 GQFLLGDLH 127


>gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
 gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           +L ++I  ++      ++D   G GG+ +    +G   I +D    A+   Q+ ++  + 
Sbjct: 294 MLRRII-AMSSNEDSRVMDCFCGGGGFLQEALNLGRKFIGIDEGIEAIKLNQKWLKASEN 352

Query: 84  QFSLF 88
                
Sbjct: 353 HLFSH 357


>gi|322373579|ref|ZP_08048115.1| putative rRNA methylase [Streptococcus sp. C150]
 gi|321278621|gb|EFX55690.1| putative rRNA methylase [Streptococcus sp. C150]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+       G + +DAT G G  +     +   V A D    A+    + + D K +
Sbjct: 13  LAQVLD-----DGSIAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTSQRLSDLKID 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NAELILDGHENLDRYVTE-PIRAAIFNLGY 96


>gi|229087300|ref|ZP_04219442.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44]
 gi|228696002|gb|EEL48845.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++    E+  
Sbjct: 4   AVTEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIENSTVRLKEKGVEERTV 62

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL 111
           L   +   L D +P++    V   +
Sbjct: 63  LVHDSHDTLLDVLPEEATGKVTGAI 87


>gi|296313818|ref|ZP_06863759.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768]
 gi|296839542|gb|EFH23480.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768]
          Length = 188

 Score = 40.1 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTVGIRGKVWAFDVQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P+  +D  VF+ G 
Sbjct: 79  GHENLKQYIPE-PLDAAVFNFGW 100


>gi|331087032|ref|ZP_08336107.1| hypothetical protein HMPREF0987_02410 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409482|gb|EGG88925.1| hypothetical protein HMPREF0987_02410 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 187

 Score = 40.1 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
            G + +DAT G  G+             +VIA D    AV   +  +      E+  +  
Sbjct: 20  EGDICIDATAGN-GHDTLLLAELVGASGSVIAFDIQEQAVQETKRKIDACGYAERTEVVL 78

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
            +   +  Y  +  V  + F+ G 
Sbjct: 79  DSHVHMGAYAKENTVSCITFNFGY 102


>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
 gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
          Length = 425

 Score = 40.1 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +    S V+A+D D   +    + ++  K Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKRLKLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +         ++   +  D ++ D   S+  +        +
Sbjct: 295 KVVCGDARTPSEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|317051158|ref|YP_004112274.1| type 11 methyltransferase [Desulfurispirillum indicum S5]
 gi|316946242|gb|ADU65718.1| Methyltransferase type 11 [Desulfurispirillum indicum S5]
          Length = 268

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           LL++    LN   G  ILD   G G +SR   K G  V  LD     ++      +D   
Sbjct: 34  LLDE----LNLPAGSTILDIGCGTGRHSRELAKRGYRVTGLDLSSEMLANAATMAKDAGM 89

Query: 84  QFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
                 A   S       D  +      LG+ S             +   +   +S +  
Sbjct: 90  SVQWVHADATSFSLPEQFDAAICLCEGSLGLLS------QTDDPIAQPLSILCNISRNLK 143

Query: 143 SASDVVNQANVKDLTRILGILGEEK 167
             + +V         R+L    +E 
Sbjct: 144 PGARMVATV--LSAARMLRSYSDED 166


>gi|226310774|ref|YP_002770668.1| hypothetical protein BBR47_11870 [Brevibacillus brevis NBRC 100599]
 gi|226093722|dbj|BAH42164.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 260

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 7/147 (4%)

Query: 31  LLNPAPGKVILD-ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
            LNP+P  V LD AT   GG+ +++      +V A D     ++  +  ++ +       
Sbjct: 40  WLNPSPEWVFLDVAT--GGGHLTKAIAPHVGHVFATDLTQPMLAAARNHLKSHTSNVFYV 97

Query: 89  QATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145
            A       L +     G              +    R         L   ++       
Sbjct: 98  VADAEALPFLSESFDAVGCRIAAHHFPNPESFVKEVARVLKPGGKFVLIDNIAAEDEKLD 157

Query: 146 DVVNQANVKDLTRILGILGEEKQASRI 172
             VN          +      +    I
Sbjct: 158 QFVNTLEKLRDHSHVRSYSRSEWVRWI 184


>gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 350

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
              + +    S  L        +D ++ D     + +     +    ++   +    +  
Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 410

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
              ++ ++ +        ++ +  +      +A
Sbjct: 411 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 443


>gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4]
 gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4]
          Length = 463

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 364

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
              + +    S  L        +D ++ D     + +     +    ++   +    +  
Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 424

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
              ++ ++ +        ++ +  +      +A
Sbjct: 425 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 457


>gi|261379857|ref|ZP_05984430.1| putative rRNA methylase [Neisseria subflava NJ9703]
 gi|284797554|gb|EFC52901.1| putative rRNA methylase [Neisseria subflava NJ9703]
          Length = 189

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++ +       G   LDAT G  G+              V A D    A++  Q  ++
Sbjct: 13  LLQQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQLKALAQTQGRLK 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     + +L       L  Y+ +  +D  VF+ G 
Sbjct: 67  ENGVDGRVALIHDGHENLLSYIDE-PLDAAVFNFGW 101


>gi|254824274|ref|ZP_05229275.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852289|ref|ZP_05241637.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|255521499|ref|ZP_05388736.1| hypothetical protein LmonocFSL_09805 [Listeria monocytogenes FSL
           J1-175]
 gi|258605595|gb|EEW18203.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293593509|gb|EFG01270.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 192

 Score = 40.1 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG   +DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
 gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
          Length = 448

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82
           V+ LL+P PG+ ++D     GG   ++ +  +    + A+DRD   +   +         
Sbjct: 245 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGAS 304

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E      A              D V+ D+  + M +     G  +++S 
Sbjct: 305 EMVEAETADLRAWAGRPEPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSM 353


>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
 gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
 gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           LMA3894-4]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
 gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
          Length = 434

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344


>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
 gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
 gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
 gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
 gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
 gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
          Length = 434

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344


>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
 gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
          Length = 434

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344


>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
 gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
 gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
 gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
          Length = 434

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344


>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
 gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|269127860|ref|YP_003301230.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268312818|gb|ACY99192.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183]
          Length = 255

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
                PG  +LD   GAG ++    + G++V+A D D   ++  ++  R  +
Sbjct: 7  ERFPITPGDHVLDMGCGAGRHAFELYRRGAHVVAFDLDADELAGVEKMFRAMR 59


>gi|295982627|pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From
           Streptococcus Thermophilus To 1.95a
 gi|295982628|pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From
           Streptococcus Thermophilus To 1.95a
          Length = 185

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         +++DAT G G  +     +   V A D    A+    + + D   +
Sbjct: 16  LAEVLD-----DESIVVDATXGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +       +  D+   + +   +F+LG 
Sbjct: 71  NTELILDGHENLDHYVREPIRAAIFNLGY 99


>gi|326942536|gb|AEA18432.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLTFAEE 161


>gi|228941931|ref|ZP_04104475.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228961019|ref|ZP_04122647.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228974862|ref|ZP_04135424.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981455|ref|ZP_04141753.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407]
 gi|228778280|gb|EEM26549.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407]
 gi|228784866|gb|EEM32883.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798652|gb|EEM45637.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228817764|gb|EEM63845.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 177

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 121

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLTFAEE 148


>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
 gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
 gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
 gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
          Length = 434

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344


>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
 gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
 gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
 gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
 gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
 gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
 gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
 gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
 gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
 gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
 gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
 gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
 gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
          Length = 434

 Score = 40.1 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        Q +   +  D ++ D   S+  +        +
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344


>gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina
           98AG31]
          Length = 218

 Score = 40.1 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  GAGG +  F      VIA+D DP  ++  +     Y   ++     A F +  
Sbjct: 41  VIVDAFCGAGGNAIQFASTSDRVIAIDIDPNKIALAEHNATVYGVEDKIEFICADFIEWI 100

Query: 97  DYVPDKGVDGVVFDLGVS 114
                  VD +       
Sbjct: 101 QNQEKGSVDVIFLSPPWG 118


>gi|261400430|ref|ZP_05986555.1| putative rRNA methylase [Neisseria lactamica ATCC 23970]
 gi|269209877|gb|EEZ76332.1| putative rRNA methylase [Neisseria lactamica ATCC 23970]
          Length = 188

 Score = 40.1 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +V+       G   LD T G  G+   F          V A D  P A++  +  ++
Sbjct: 13  LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQ 66

Query: 80  DYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +       L       L+ YV +  ++  +F+ G 
Sbjct: 67  EAGYSNVRLILDGHENLKQYVSE-PLNAAIFNFGW 100


>gi|330752038|emb|CBL80550.1| putative methyltransferase [uncultured Flavobacteria bacterium]
          Length = 243

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           + L  +PG  ILD   G G +S+   ++G +V  +D  P +++  ++   +    F    
Sbjct: 39  SFLKLSPGSTILDLACGKGRHSKYLNELGYHVTGIDLSPQSITYAKKF--ENDNLFFDEH 96

Query: 90  ATFSQLQDYVPDKGVDGVV 108
              S+L     D   +   
Sbjct: 97  DM-SKLYPKQFDAVFNLFT 114


>gi|296120812|ref|YP_003628590.1| rRNA methylase [Planctomyces limnophilus DSM 3776]
 gi|296013152|gb|ADG66391.1| putative rRNA methylase [Planctomyces limnophilus DSM 3776]
          Length = 196

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 22  PV----LLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVS 72
           PV    L  +++   L   PG   +DAT G  G+   F          V A D    A++
Sbjct: 3   PVPLTTLAHELLRQHL--QPGDFAIDATAGN-GHDMEFLARTVGPAGLVWAFDVQEQAIA 59

Query: 73  CGQETMRDYK-EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113
             +            L Q + SQ++  +P+K    +  V+ +LG 
Sbjct: 60  ASEYRRSQAGVNWVQLQQVSHSQMKAVIPEKYHGKLAAVMLNLGY 104


>gi|228988006|ref|ZP_04148110.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771723|gb|EEM20185.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 177

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 121

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLKFAEE 148


>gi|229141487|ref|ZP_04270023.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26]
 gi|229199766|ref|ZP_04326385.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293]
 gi|228583706|gb|EEK41905.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293]
 gi|228641972|gb|EEK98267.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26]
          Length = 177

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 121

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLKFAEE 148


>gi|257387329|ref|YP_003177102.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169636|gb|ACV47395.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 206

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + ++ IA L+  P   +LD   G G  +    +   +V  LD+   A    +   +  K 
Sbjct: 33  MRDEAIAKLDIEPDDHVLDVGCGTGFATEGLLEATEHVYGLDQ--SAHQLEKAYAKFGKR 90

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
               F    ++   +  D       FD+  SS  I+    
Sbjct: 91  GPVAFHRGDAERLPFQDD------TFDVVWSSGSIEYWPN 124


>gi|196032979|ref|ZP_03100392.1| conserved hypothetical protein [Bacillus cereus W]
 gi|195994408|gb|EDX58363.1| conserved hypothetical protein [Bacillus cereus W]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|206977282|ref|ZP_03238179.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217962239|ref|YP_002340809.1| hypothetical protein BCAH187_A4886 [Bacillus cereus AH187]
 gi|222098222|ref|YP_002532279.1| sam-dependent methyltransferase, mraw methylase family [Bacillus
           cereus Q1]
 gi|206744433|gb|EDZ55843.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217065440|gb|ACJ79690.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221242280|gb|ACM14990.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           cereus Q1]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|163854093|ref|YP_001642136.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|218533038|ref|YP_002423854.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
 gi|163665698|gb|ABY33065.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|218525341|gb|ACK85926.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
          Length = 216

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79
           P+LL ++I  L   PG   LD   G G GY  +  +     V+AL+ DP  +   +E + 
Sbjct: 68  PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIGAARERLG 125

Query: 80  DYKEQFS 86
           D      
Sbjct: 126 DTVNLVQ 132


>gi|49476826|ref|YP_038794.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|296505217|ref|YP_003666917.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
 gi|49328382|gb|AAT59028.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|296326269|gb|ADH09197.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|324328648|gb|ADY23908.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIESSTTRLKEKELFERTI 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|228923508|ref|ZP_04086790.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836146|gb|EEM81505.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 177

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 63  LVHDSHDTLLSVLPEGAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMTPQ 121

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLKFAEE 148


>gi|301056259|ref|YP_003794470.1| MraW methylase family protein [Bacillus anthracis CI]
 gi|300378428|gb|ADK07332.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
          cereus biovar anthracis str. CI]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80
              G   +DAT G  G+   F          V   D    A+      +++
Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKE 67


>gi|255065187|ref|ZP_05317042.1| putative rRNA methylase [Neisseria sicca ATCC 29256]
 gi|255050608|gb|EET46072.1| putative rRNA methylase [Neisseria sicca ATCC 29256]
          Length = 189

 Score = 40.1 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80
           LL++ +      P    LD T G G  +    +    G  V A D    A++  +  + +
Sbjct: 13  LLKQAL-----KPDARALDGTAGNGNDTLMLARSVGRGGKVWAFDIQEQALANTRMRLEE 67

Query: 81  --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               ++  L       L  ++ +  +D  VF+ G 
Sbjct: 68  AGMADRVELILDGHENLATHIRE-PLDAAVFNFGW 101


>gi|229916468|ref|YP_002885114.1| rRNA methylase [Exiguobacterium sp. AT1b]
 gi|229467897|gb|ACQ69669.1| putative rRNA methylase [Exiguobacterium sp. AT1b]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G+V +D T G  G+   F         +V A D    AV+  +  + +     + ++
Sbjct: 18  IEEGQVAIDMTAGN-GHDTLFLANAVGETGHVYAFDIQSEAVAATKARVEESGVSNRVTV 76

Query: 88  FQATFSQLQDYVPD--KGVDGVVFDLGV 113
              +   +Q  V    + +   VF+LG 
Sbjct: 77  IHDSHDTVQAVVEKEARPITAAVFNLGY 104


>gi|15078947|ref|NP_149698.1| 235L [Invertebrate iridescent virus 6]
 gi|82061647|sp|Q91FT7|235L_IIV6 RecName: Full=Putative methyltransferase 235L; Flags: Precursor
 gi|15042316|gb|AAK82096.1|AF303741_235 235L [Invertebrate iridescent virus 6]
          Length = 265

 Score = 40.1 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
           +  L  A  K ++D   G G  +          +VI +D+D   +   +ET  +   +  
Sbjct: 38  LDQLQIASNKTVIDIGCGNGKITNYISSLVKDGSVIGIDKDSSMIKYAKETYPNVDFKVM 97

Query: 87  LFQA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
             Q     +  D V        + +   S   I    +
Sbjct: 98  DIQNENIDKKYDIVVSFFCLPWIVNKQASFHHISNMMK 135


>gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3]
 gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3]
          Length = 449

 Score = 40.1 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           ++ I+ T       ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P 
Sbjct: 284 NAQINKT-------MVAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPE 336

Query: 70  AVSCGQETMRDYK-EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFS 126
            VS  +E          + +    S  L        +D ++ D     + +     +   
Sbjct: 337 MVSQARENAAANGLSNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMK 396

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
            ++   +    +     ++ ++ +        ++ +  +      +A
Sbjct: 397 PRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 443


>gi|226364165|ref|YP_002781947.1| hypothetical protein ROP_47550 [Rhodococcus opacus B4]
 gi|226242654|dbj|BAH53002.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 246

 Score = 40.1 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
            L   PG  ++D   GAG +S    + G++VIA D++   ++  ++      E
Sbjct: 7  DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELADVEKMFVAMAE 60


>gi|111021629|ref|YP_704601.1| methyltransferase [Rhodococcus jostii RHA1]
 gi|110821159|gb|ABG96443.1| possible methyltransferase [Rhodococcus jostii RHA1]
          Length = 246

 Score = 40.1 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
            L   PG  ++D   GAG +S    + G++VIA D++   ++  ++      E
Sbjct: 7  DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELADVEKMFVAMAE 60


>gi|320104694|ref|YP_004180285.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319751976|gb|ADV63736.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           ++++A L   PG V+ D   GAG ++    ++      VIA D  P  + 
Sbjct: 120 DEMLAALKIKPGMVVADVGAGAGFHTLRLARLVGPTGTVIATDVQPQMIQ 169


>gi|268315920|ref|YP_003289639.1| Fmu (Sun) domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333454|gb|ACY47251.1| Fmu (Sun) domain protein [Rhodothermus marinus DSM 4252]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 9/45 (20%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           LL +        PG+V++D   G GG   +  +  +    + A D
Sbjct: 231 LLTEA------RPGQVVVDGCAGGGGKTLHLAALMEGKGRLYAFD 269


>gi|261252564|ref|ZP_05945137.1| biotin synthesis protein BioC [Vibrio orientalis CIP 102891]
 gi|260935955|gb|EEX91944.1| biotin synthesis protein BioC [Vibrio orientalis CIP 102891]
          Length = 267

 Score = 39.7 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           GK +LD   G G +S    K G++VI  D     +   Q       +  +  Q    +L 
Sbjct: 53  GKTVLDVGCGTGYFSFELLKRGAHVICFDLSEQMLDAAQSR--CGSDHVTYQQGDAEKLP 110

Query: 97  DYVPDKGVDGVVFDLGVSSMQ 117
                         L      
Sbjct: 111 FETNSVDYVFSSLALQWCQDL 131


>gi|94310012|ref|YP_583222.1| methyltransferase type 12 [Cupriavidus metallidurans CH34]
 gi|93353864|gb|ABF07953.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 191

 Score = 39.7 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
            PG  +LD   G+G +S      G  V+A+DRD  A++ 
Sbjct: 22 IRPGGRVLDLACGSGRHSAWLAAQGFAVLAVDRDAEAIAA 61


>gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
 gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105
           G GG +R+  + G  ++A++RD   +    E    +  Q  +      Q+          
Sbjct: 23  GPGGLTRAILRAGGRLVAVERDDRCLPALAELADAFPGQLKVIAGDAMQIDAQAEAGDGA 82

Query: 106 GVVFDLGVS 114
            ++ +L  +
Sbjct: 83  HIIANLPYN 91


>gi|325202454|gb|ADY97908.1| putative rRNA methylase [Neisseria meningitidis M01-240149]
 gi|325207794|gb|ADZ03246.1| putative rRNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 188

 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++           
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPK-PLDAAIFNFGW 100


>gi|121634545|ref|YP_974790.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18]
 gi|120866251|emb|CAM09992.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18]
 gi|308388937|gb|ADO31257.1| hypothetical protein NMBB_0845 [Neisseria meningitidis alpha710]
          Length = 188

 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++           
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPK-PLDAAIFNFGW 100


>gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 350

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
              + +    S  L        +D ++ D     + +     +    ++   +    +  
Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 410

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
              ++ ++ +        ++ +  +      +A
Sbjct: 411 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 443


>gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7]
 gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7]
          Length = 463

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 364

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
              + +    S  L        +D ++ D     + +     +    ++   +    +  
Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 424

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
              ++ ++ +        ++ +  +      +A
Sbjct: 425 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 457


>gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 240

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G+++
Sbjct: 17  EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 76

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 77  VAFDYSKKMIELAKRRQSQYAKQIEFC 103


>gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 255

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G+++
Sbjct: 32  EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A D     +   +     Y +Q    
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFC 118


>gi|194289304|ref|YP_002005211.1| hypothetical protein RALTA_A1180 [Cupriavidus taiwanensis LMG
          19424]
 gi|193223139|emb|CAQ69144.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG
          19424]
          Length = 195

 Score = 39.7 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           PG  +LD   G G ++      G  V+A+DRD  A++
Sbjct: 23 RPGARVLDLACGGGRHAAWLAARGHQVLAVDRDADAIA 60


>gi|197119722|ref|YP_002140149.1| rRNA methyltransferase [Geobacter bemidjiensis Bem]
 gi|197089082|gb|ACH40353.1| rRNA methyltransferase, putative [Geobacter bemidjiensis Bem]
          Length = 192

 Score = 39.7 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
            PG   LDAT G G  +    ++   G  V A D  P A++  +  +    
Sbjct: 22 VRPGDRALDATCGNGFDTLLLAELAGEGGEVWAFDVQPRAIAATRALLEREG 73


>gi|297583531|ref|YP_003699311.1| putative rRNA methylase [Bacillus selenitireducens MLS10]
 gi|297141988|gb|ADH98745.1| putative rRNA methylase [Bacillus selenitireducens MLS10]
          Length = 188

 Score = 39.7 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 35  APGKVILDATFGAGGY-SRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
             G  ++DAT G  G+ +    +      +V   D    A+      ++     E+ +L 
Sbjct: 19  QEGDTVVDATVGN-GHDTVYLAELVGASGSVYGFDIQKTALDATLNKLQQKGLEERVALI 77

Query: 89  QATFSQLQDY-VPDKGVDGVVFDLGV 113
                QL  Y   +K V   VF+LG 
Sbjct: 78  HDGHEQLGAYIPQEKTVHAAVFNLGY 103


>gi|237813872|ref|YP_002898323.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|237503463|gb|ACQ95781.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +          V  +D DP AV   +      +
Sbjct: 157 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 214

Query: 83  EQFSL 87
              + 
Sbjct: 215 ADVTY 219


>gi|76812155|ref|YP_334873.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|126439278|ref|YP_001060478.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           668]
 gi|254258318|ref|ZP_04949372.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|254299321|ref|ZP_04966771.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           406e]
 gi|123597942|sp|Q3JNI0|PRMA_BURP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223401|sp|A3NDQ7|PRMA_BURP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|76581608|gb|ABA51083.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|126218771|gb|ABN82277.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           668]
 gi|157809259|gb|EDO86429.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           406e]
 gi|254217007|gb|EET06391.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +          V  +D DP AV   +      +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|53726117|ref|YP_104049.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121601286|ref|YP_991774.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
 gi|124385858|ref|YP_001027267.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126450877|ref|YP_001082797.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|166998585|ref|ZP_02264443.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
           PRL-20]
 gi|238561259|ref|ZP_00442332.2| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|254178904|ref|ZP_04885558.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202768|ref|ZP_04909131.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
 gi|254208110|ref|ZP_04914460.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
 gi|60390319|sp|Q62GX2|PRMA_BURMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223398|sp|A3MRB1|PRMA_BURM7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223399|sp|A2S5P8|PRMA_BURM9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223400|sp|A1V0M1|PRMA_BURMS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52429540|gb|AAU50133.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121230096|gb|ABM52614.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
 gi|124293878|gb|ABN03147.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126243747|gb|ABO06840.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147747015|gb|EDK54092.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
 gi|147752004|gb|EDK59071.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
 gi|160694818|gb|EDP84826.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238524959|gb|EEP88389.1| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|243065269|gb|EES47455.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
           PRL-20]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +          V  +D DP AV   +      +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|53720593|ref|YP_109579.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|167740256|ref|ZP_02413030.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           14]
 gi|167817474|ref|ZP_02449154.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           91]
 gi|167847363|ref|ZP_02472871.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           B7210]
 gi|60390329|sp|Q63QN9|PRMA_BURPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52211007|emb|CAH36995.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           K96243]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +          V  +D DP AV   +      +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|134280036|ref|ZP_01766747.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           305]
 gi|134248043|gb|EBA48126.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           305]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +          V  +D DP AV   +      +
Sbjct: 157 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 214

Query: 83  EQFSL 87
              + 
Sbjct: 215 ADVTY 219


>gi|326791105|ref|YP_004308926.1| rRNA methylase [Clostridium lentocellum DSM 5427]
 gi|326541869|gb|ADZ83728.1| rRNA methylase [Clostridium lentocellum DSM 5427]
          Length = 184

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 35  APGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
             G + +DAT G  G+ +   C++      V+A D    AV+  +  +++   +  ++  
Sbjct: 18  KAGDLCIDATAGR-GHDTVFLCELVGDTGRVLAFDIQEEAVNSTKFLLKEKGLKAEVYLE 76

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
           + + +  YV  + VDG+VF+ G 
Sbjct: 77  SHTHMDHYVKPETVDGIVFNFGY 99


>gi|253681007|ref|ZP_04861810.1| possible rRNA methylase [Clostridium botulinum D str. 1873]
 gi|253562856|gb|EES92302.1| possible rRNA methylase [Clostridium botulinum D str. 1873]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           L ++ IA+     G + +DAT G G  +    ++      V + D    A+   ++ + D
Sbjct: 12  LAKE-IAIKKLQHGDIAVDATMGNGNDTVFLAELVGDSGTVYSFDVQKEAIDNTRKKIID 70

Query: 81  Y--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              K    L       +  Y  +K V  V+F+LG 
Sbjct: 71  NKIKTNIQLIHDGHENIDKY-INKDVKLVMFNLGY 104


>gi|168214958|ref|ZP_02640583.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
 gi|170713598|gb|EDT25780.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F     
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENIEVILDSHENFE---T 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|78355142|ref|YP_386591.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217547|gb|ABB36896.1| methyltransferase (putative) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 195

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 16/99 (16%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           L+ +V+          ++DAT G  G+   F          V   D    A+      ++
Sbjct: 19  LVRQVV-----RSADTVVDATAGN-GHDTLFLAGLVGPQGRVYGFDVQAQALENTARRLQ 72

Query: 80  DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +  +     F        +L     +  +   +F+LG 
Sbjct: 73  RHGAERQVTLFHAGHEAAGRLLPAGTE-NLACAMFNLGY 110


>gi|217420963|ref|ZP_03452468.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           576]
 gi|254199088|ref|ZP_04905503.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           S13]
 gi|169656918|gb|EDS88315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           S13]
 gi|217396375|gb|EEC36392.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           576]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +         +V  +D DP AV   +      +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGHVTGIDIDPQAVEAARHNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|168207497|ref|ZP_02633502.1| conserved hypothetical protein [Clostridium perfringens E str.
           JGS1987]
 gi|170661178|gb|EDT13861.1| conserved hypothetical protein [Clostridium perfringens E str.
           JGS1987]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F     
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 46  GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           G GG +R+     +  VIA++RD  A++   E M  Y  +  +  A   +++     +  
Sbjct: 55  GPGGLTRALLDNDARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATLGEAP 114

Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
             +V +L  +   +              L +     
Sbjct: 115 RRIVANLPYNISTVLLLAWLRRIDAFESLTLMFQKE 150


>gi|95930615|ref|ZP_01313349.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684]
 gi|95133267|gb|EAT14932.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684]
          Length = 264

 Score = 39.7 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 1  MESKSCKTMSSAIHHTIG-------DH-VPVLLEKVIALLNPAPGKVILD-ATFGAGGYS 51
          M  K+ K MS   +  +G        H   V L+ ++ ++ P     +LD AT   GG++
Sbjct: 1  MTDKTSKEMSRDQYSQVGDAYVRSQTHAKGVDLDYLLNMVQPQKDWKVLDVAT--GGGHT 58

Query: 52 RSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQ 84
                    VIA+D  P  V   ++ + D K Q
Sbjct: 59 ALILAPYVQQVIAVDLTPNMVETAKKFVCDEKGQ 92


>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
 gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
          Length = 451

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +    +NV+A+D D   +    E +     +  +
Sbjct: 262 EYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLERLNLKAQV 321

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   +++   +  D ++ D   S+  +        +
Sbjct: 322 ICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKW 361


>gi|225465006|ref|XP_002263914.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736150|emb|CBI24188.3| unnamed protein product [Vitis vinifera]
          Length = 259

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQ--- 84
              G  ++DAT G G  + +  KM         V  +D    A+      + +       
Sbjct: 84  VQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSSLLNESVNPIEK 143

Query: 85  -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                F++  +   ++        +  V F+LG 
Sbjct: 144 ELVKLFTICHSRMEEV--VPKSTTLRLVAFNLGY 175


>gi|147801353|emb|CAN63608.1| hypothetical protein VITISV_019132 [Vitis vinifera]
          Length = 285

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQ--- 84
              G  ++DAT G G  + +  KM         V  +D    A+      + +       
Sbjct: 84  VQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSSLLNESVNPIEK 143

Query: 85  -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                F++  +   ++        +  V F+LG 
Sbjct: 144 ELVKLFTICHSRMEEV--VPKSTTLRLVAFNLGY 175


>gi|124004979|ref|ZP_01689822.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
 gi|123989657|gb|EAY29203.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
          Length = 504

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/182 (7%), Positives = 48/182 (26%), Gaps = 5/182 (2%)

Query: 52  RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            +  +  S V  +D D  A+      +    E           +  +  +   +  +  +
Sbjct: 70  EAILENLSKVRGMDIDEEAIKICISDLNKLVEP-YGINFPSKNVSKFDWNIQSENTLSQI 128

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN----VKDLTRILGILGEEK 167
                + +       + +   L         +  +     +    +         L +  
Sbjct: 129 DKGRERFEFIVGNPPYIRIQHLSEEDRYLIQTRYEFCKSGSTDTYIAFFEYCQKKLSKNG 188

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227
               I        ++     +  ++    K +   K+ ++     ++ A+ IF   + + 
Sbjct: 189 ICGLITPNTFFYTETGRILRSYFINERKIKQITNYKDIQLFDDATTYSAITIFDRKQNDS 248

Query: 228 LA 229
             
Sbjct: 249 FC 250


>gi|110800429|ref|YP_695783.1| hypothetical protein CPF_1337 [Clostridium perfringens ATCC 13124]
 gi|168212064|ref|ZP_02637689.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110675076|gb|ABG84063.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
 gi|170710019|gb|EDT22201.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F     
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|269929208|ref|YP_003321529.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788565|gb|ACZ40707.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 250

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVI--LDATFGAGGYSRSFCKMGS--NVIALDRD 67
           AI  +  +HV +L     +L+   P +    +D   GAGG S +  +      V+ALD  
Sbjct: 28  AITPSRAEHVALLT----SLIPVRPDEPFLAVDLACGAGGLSAAILERFPASQVVALDGS 83

Query: 68  PFAVSCGQETMRDYKEQFSLFQ 89
              +   +  +  Y  +  L  
Sbjct: 84  HRMLDEARRRLAPYAGRVDLRH 105


>gi|168218096|ref|ZP_02643721.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
 gi|182379886|gb|EDT77365.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F     
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|326500516|dbj|BAK06347.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQ--- 84
              G  ++DAT G G  + +  KM         V  +D    A+      +    +    
Sbjct: 84  VRKGDTVVDATCGNGNDTFALLKMVSDETGRGRVYGMDIQDSAIDNTSSFLNMAVDTHEK 143

Query: 85  -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                FS+  +    +        V  V F+LG 
Sbjct: 144 ELVKLFSICHSRMEDI--VPKGSPVRLVAFNLGY 175


>gi|291438811|ref|ZP_06578201.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341706|gb|EFE68662.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQET 77
           +++ LL+   G  +LDA  G G    +  +    G  VI +DRDP  +   +  
Sbjct: 33 RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARAR 87


>gi|239930453|ref|ZP_04687406.1| hypothetical protein SghaA1_19676 [Streptomyces ghanaensis ATCC
          14672]
          Length = 257

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQET 77
           +++ LL+   G  +LDA  G G    +  +    G  VI +DRDP  +   +  
Sbjct: 30 RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARAR 84


>gi|119717022|ref|YP_923987.1| methyltransferase type 11 [Nocardioides sp. JS614]
 gi|119537683|gb|ABL82300.1| Methyltransferase type 11 [Nocardioides sp. JS614]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 30 ALLNPAPGKVILDATFGAGG--YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            L   PG+ +LD   GAGG  ++    + G++V+A D D   ++   E     KE   +
Sbjct: 7  DRLGLRPGERVLD--MGAGGGRHAFEMYRRGADVVAFDMDADELAGVLEIFGAMKENGEV 64

Query: 88 FQATFSQLQD 97
           +   + ++ 
Sbjct: 65 PEGANADIKQ 74


>gi|227510589|ref|ZP_03940638.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190241|gb|EEI70308.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 191

 Score = 39.7 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 14/112 (12%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   +     H   LL++ ++      G  ++D T G G  +    K+      V   D
Sbjct: 1   MNQLPNALQFSHQ--LLKEAVST-----GDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDYVPDK-GVDGVVFDLGV 113
               A+      ++         Q    + +++ + + D   +   +F+LG 
Sbjct: 54  IQQQALQHTISLLKKNLSSLQNVQLYKKSHAEIDNILDDNVRISAAIFNLGY 105


>gi|182626337|ref|ZP_02954092.1| conserved hypothetical protein [Clostridium perfringens D str.
           JGS1721]
 gi|177908356|gb|EDT70901.1| conserved hypothetical protein [Clostridium perfringens D str.
           JGS1721]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F     
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ V+ +V++LG 
Sbjct: 81  YIKEENVECIVYNLGY 96


>gi|325203836|gb|ADY99289.1| putative rRNA methylase [Neisseria meningitidis M01-240355]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|309378751|emb|CBX22577.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|18310063|ref|NP_561997.1| hypothetical protein CPE1081 [Clostridium perfringens str. 13]
 gi|18144742|dbj|BAB80787.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F     
Sbjct: 30  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 85

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 86  YIKEENVDCIVYNLGY 101


>gi|169342633|ref|ZP_02863677.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299275|gb|EDS81344.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +   ++  E        F   + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENF---KT 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|28210208|ref|NP_781152.1| putative rRNA methylase [Clostridium tetani E88]
 gi|28202644|gb|AAO35089.1| putative rRNA methylase [Clostridium tetani E88]
          Length = 192

 Score = 39.3 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
               G + +DAT G G  +   CK+      V + D    A+   ++ +      ++   
Sbjct: 23  KLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKLYQNNIHWAELI 82

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
               +  D    +    ++F+LG 
Sbjct: 83  LDGHENMDKYLKEEPKIILFNLGY 106


>gi|116334949|ref|YP_802444.1| hypothetical protein CRP_047 [Candidatus Carsonella ruddii PV]
 gi|116235230|dbj|BAF35078.1| hypothetical protein [Candidatus Carsonella ruddii PV]
          Length = 193

 Score = 39.3 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSNVI-ALDRDPFAVSC 73
               H  +L  +++        + +LD TFG GGY +    K    +I  +D    +   
Sbjct: 1   MKNKHTTILPNRLL-----YKKEYLLDFTFGCGGYIKNLILKQKFKIIYTIDVSQISYLI 55

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
             +    +   F L     +++        VD +++D G++S +I       +
Sbjct: 56  SNKIYNKFFFFFRLKIKNINKIFKRFNLINVDFIIYDQGINSYEIKNFYYKLN 108


>gi|326434165|gb|EGD79735.1| hypothetical protein PTSG_13091 [Salpingoeca sp. ATCC 50818]
          Length = 441

 Score = 39.3 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R  +             R  +P       ++ + KK   P  +++  N RSRSA+L+   
Sbjct: 386 RAAEDALRQM----QPPRWTLPPELE---YRCVWKKEAGPAGKELRRNPRSRSARLQMYE 438

Query: 316 RT 317
           R 
Sbjct: 439 RI 440


>gi|126651273|ref|ZP_01723480.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
 gi|126591802|gb|EAZ85885.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
          Length = 192

 Score = 39.3 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL+  +       G  ++DAT G  G+   F          V A D    AV      + 
Sbjct: 13  LLKDSVE-----EGDAVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLHRLL 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D+    +  +      ++ ++V    V   +F+LG 
Sbjct: 67  DHGLEHRVLVLNKGHEEVANFVHK-KVAAAIFNLGY 101


>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
 gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
          Length = 426

 Score = 39.3 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    S V+A+D D   +   QE ++  K   
Sbjct: 235 ALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        QD+   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|163942480|ref|YP_001647364.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4]
 gi|163864677|gb|ABY45736.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4]
          Length = 190

 Score = 39.3 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80
              G   +DAT G  G+   F          V   D    A+      ++ 
Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKK 67


>gi|255030879|ref|ZP_05302830.1| hypothetical protein LmonL_20366 [Listeria monocytogenes LO28]
          Length = 68

 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80
             G  ++DAT G  G+             +V+  D    A+      + +
Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLEN 67


>gi|255282303|ref|ZP_05346858.1| UbiE/COQ5 methyltransferase [Bryantella formatexigens DSM 14469]
 gi|255267251|gb|EET60456.1| UbiE/COQ5 methyltransferase [Bryantella formatexigens DSM 14469]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 8/149 (5%)

Query: 45  FGAG-GYS-RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102
            G G GYS  +  + G  VIALD++   +   ++ ++             + +     D 
Sbjct: 40  VGCGTGYSTLALLENGHKVIALDKNNECIEKAKKLLQQKGYSIGAMPD--ADVCFIENDV 97

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162
                  ++                              +     ++Q        +   
Sbjct: 98  VTREFYSEVLSDLQFDAVICWNVGSYWDKENVQFYVPYMLEYGLNIDQIKE----NVESS 153

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            GE    +    A +++      + T ++
Sbjct: 154 YGELILWNACKIATMRKVPMHIVERTGEI 182


>gi|312796682|ref|YP_004029604.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI
          454]
 gi|312168457|emb|CBW75460.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI
          454]
          Length = 206

 Score = 39.3 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           L P     +LD   G G + R F + G  V+ALDRD  A++   E 
Sbjct: 15 HLVPR-DGTVLDVACGRGRHVRWFAQRGHPVVALDRDAQALAALAEW 60


>gi|90419370|ref|ZP_01227280.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336307|gb|EAS50048.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 29  IALLNPAPGKVILDATFGAG-GYSRSFCKMG-SNVIALDRDPFAVSCGQETMR 79
           I L    P  V+LD   G G GYS +       +V++L++DP       E + 
Sbjct: 70  IQLAAIRPDDVVLD--VGCGTGYSSAVLSHLAGSVVSLEQDPDLAEAATENLA 120


>gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 458

 Score = 39.3 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
             +L ++ I  L     + ++DA  G G  G S +  K    V  +D  P A+   +E  
Sbjct: 297 TSILYDEAIKALALTKNETVVDAYCGVGTIGLSLA--KHAKEVRGMDIIPQAIENAKENA 354

Query: 79  RDYKEQFSLF 88
           R  +   + +
Sbjct: 355 RRIQANNTHY 364


>gi|308161050|gb|EFO63512.1| Met-10 protein [Giardia lamblia P15]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 14  HHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           H ++  H+  V            P  ++LD T G G ++    K    +N+I  D +P A
Sbjct: 224 HLSLAKHISQV----------IRPNDLVLDGTCGIGPHALLLAKRFNFTNLICNDLNPDA 273

Query: 71  VSCGQETMRDY--KEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +         + F    S L +  +P+K +  V+F L   S+ +    +GFS 
Sbjct: 274 YKSLKENINMNKVDHAITCFNEDVSSLLERLLPEKNLKAVIFSLPELSIDLLKAMKGFSG 333

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162
                         ++  D++ + +   L   +  
Sbjct: 334 IYCFLECFTRVPPHLAYYDLLLRCSESLLDDKMCT 368


>gi|161524353|ref|YP_001579365.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189350893|ref|YP_001946521.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC
          17616]
 gi|160341782|gb|ABX14868.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616]
 gi|189334915|dbj|BAG43985.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC
          17616]
          Length = 200

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
                +LD   G G ++R F   G  V+ALDRDP A++  +  
Sbjct: 29 VRAHGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAALRAI 72


>gi|301609194|ref|XP_002934152.1| PREDICTED: trimethylguanosine synthase-like [Xenopus (Silurana)
           tropicalis]
          Length = 845

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            V++DA  G GG +  F K G+ VIA+D DP  +   +     Y   ++    +  F  L
Sbjct: 689 GVVVDAFCGVGGNAIQFAKAGNRVIAVDIDPVKLDFARNNAEVYGVTDRIEFIRGDFMLL 748

Query: 96  QD 97
             
Sbjct: 749 AQ 750


>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
 gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
          Length = 429

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            + LL+P  G+ ILD    A  GG +    +     +V+A+D D   +S  +E ++    
Sbjct: 238 CVDLLDPQDGEQILD--LCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLNL 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              +         ++  D+  D ++ D   S+  +        +
Sbjct: 296 HAVVRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|15676645|ref|NP_273789.1| hypothetical protein NMB0747 [Neisseria meningitidis MC58]
 gi|7225976|gb|AAF41160.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325140096|gb|EGC62625.1| putative rRNA methylase [Neisseria meningitidis CU385]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPK-PLDAAIFNFGW 100


>gi|218767870|ref|YP_002342382.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491]
 gi|121051878|emb|CAM08184.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491]
 gi|319410117|emb|CBY90453.1| putative rRNA methyltransferase [Neisseria meningitidis WUE 2594]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPK-PLDAAIFNFGW 100


>gi|218283098|ref|ZP_03489188.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989]
 gi|218216119|gb|EEC89657.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989]
          Length = 175

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 30  ALLNP--APGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFS 86
             L P      + +DAT G G  +  F       V   +         +E + + +  F 
Sbjct: 10  EFLKPVLHKQAICVDATLGQGKDTDFFLSQNVHKVYGFEIQRDVFESTKERLGNQRTCF- 68

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
            F      +++Y+ +  VD ++F+ G 
Sbjct: 69  -FHVGHEHMEEYIHE-EVDAIIFNFGY 93


>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 323

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 11  SAIHHTIGDHVP----VLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIA 63
           + + + +G +VP     +L  V+  L+P PG  +LDA    GG   +          +IA
Sbjct: 97  ATLEYMMGYYVPQDAASMLPPVV--LDPKPGDRVLDACAAPGGKTTHLAQLMDNEGTLIA 154

Query: 64  LDRDPFAVSCGQETMRDYK 82
           +D DP  +   +  +    
Sbjct: 155 IDVDPDRMRALKSNLARCG 173


>gi|110802121|ref|YP_698470.1| hypothetical protein CPR_1148 [Clostridium perfringens SM101]
 gi|110682622|gb|ABG85992.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AVS  +   ++  E        F     
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVSSYKSKNKENVEVILDSHENFE---T 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|90413380|ref|ZP_01221373.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
 gi|90325622|gb|EAS42091.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
          Length = 294

 Score = 39.3 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGSN-VIALDRDPFAVSCGQETMRDYK 82
            +  L+     G+ I+D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGQTIID--FGCGSGILAIAALKLGAKKVIGIDIDPQAIQASRDNAERNG 206


>gi|326384262|ref|ZP_08205944.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197127|gb|EGD54319.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395]
          Length = 240

 Score = 39.3 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
            L+  PG  ++D   G G +S    + G++VIA D+
Sbjct: 4  DRLDVGPGVRVIDIGAGQGRHSYEMLRRGADVIAFDQ 40


>gi|329117650|ref|ZP_08246367.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020]
 gi|326908055|gb|EGE54969.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020]
          Length = 180

 Score = 39.3 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKE 83
           L++V+         + +DAT G G  +  F  +   VIA D    A+   ++ +   +  
Sbjct: 12  LKEVLT-----QDSLFVDATMGNGNDTLYFAPLVKEVIAFDIQEEALLATRKKLDAIHVN 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       +  Y     +DG +F+LG 
Sbjct: 67  NVQLILDGHQHVDKYTDK--IDGAIFNLGY 94


>gi|295398842|ref|ZP_06808836.1| rRNA methylase [Aerococcus viridans ATCC 11563]
 gi|294972932|gb|EFG48765.1| rRNA methylase [Aerococcus viridans ATCC 11563]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQ----- 84
               G  +LDAT G G  +    ++      V  LD    A++  ++ + +  +      
Sbjct: 16  KVHKGDHVLDATVGKGNDTLLLSQLVGQEGIVYGLDIQAQAIAFAEKRLSEEAKFKNTKL 75

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           F    +   Q+     D+ +   +F+LG 
Sbjct: 76  FVKNHSELDQV--IPTDEKLQSAIFNLGY 102


>gi|126642775|ref|YP_001085759.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          17978]
 gi|169632585|ref|YP_001706321.1| putative SAM-dependent methyltransferase [Acinetobacter baumannii
          SDF]
 gi|126388659|gb|ABO13157.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          17978]
 gi|169151377|emb|CAP00101.1| conserved hypothetical protein; putative SAM-dependent
          methyltransferase [Acinetobacter baumannii]
          Length = 194

 Score = 39.3 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     E  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70

Query: 79 RDYKEQFSLFQATFSQLQ 96
          +D   +F  +  +F    
Sbjct: 71 KD-DSKFIFYHESFEDFN 87


>gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
 gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LLNP  G+ +LDA    GG +    +    +V+ALD D   ++  QE +     Q +L  
Sbjct: 239 LLNPQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQATLHC 298

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           A    + ++   +  D ++ D+  ++      +    +
Sbjct: 299 APAENVHEWWDGQPFDAILADVPCTASGTMKRNPDIKW 336


>gi|261368779|ref|ZP_05981662.1| putative rRNA methylase [Subdoligranulum variabile DSM 15176]
 gi|282569124|gb|EFB74659.1| putative rRNA methylase [Subdoligranulum variabile DSM 15176]
          Length = 159

 Score = 39.3 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQET 77
           L  + +   + APG   +DAT G  G+   F          V+ALD  P AV      
Sbjct: 104 LCHEFLTA-HLAPGGFCIDATCGN-GHDTEFLCRLAGPQGRVLALDIQPRAVEATNAR 159


>gi|24380072|ref|NP_722027.1| hypothetical protein SMU.1697c [Streptococcus mutans UA159]
 gi|317455176|pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
           Methyltransferase From Streptococcus Mutans In Complex
           With Sah
 gi|317455177|pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
           Methyltransferase From Streptococcus Mutans In Complex
           With Sah
 gi|24378066|gb|AAN59333.1|AE014999_1 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 181

 Score = 39.3 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L +V+         + +DAT G G  +     +   V A D    A+   +E +     +
Sbjct: 13  LSQVLD-----KNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLEQLNIK 67

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                    Q  +    + +   +F+LG 
Sbjct: 68  NVQLILDGHQTINKYVTEPIRAAIFNLGY 96


>gi|229019986|ref|ZP_04176776.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273]
 gi|229026221|ref|ZP_04182581.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272]
 gi|228735067|gb|EEL85702.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272]
 gi|228741307|gb|EEL91517.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273]
          Length = 177

 Score = 39.3 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80
              G   +DAT G  G+   F          V   D    A+      +++
Sbjct: 4  AVKEGDYAIDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKE 54


>gi|260548967|ref|ZP_05823189.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
 gi|260408135|gb|EEX01606.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
          Length = 192

 Score = 38.9 bits (89), Expect = 1.00,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     E  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70

Query: 79 RDYKEQFSLFQATFSQLQ 96
          +D   +F  +  +F    
Sbjct: 71 KD-DSKFIFYHESFEDFN 87


>gi|300704486|ref|YP_003746089.1| hypothetical protein RCFBP_20290 [Ralstonia solanacearum
          CFBP2957]
 gi|299072150|emb|CBJ43482.1| conserved protein of unknown function,
          S-adenosyl-L-methionine-dependent methyltransferase
          domain [Ralstonia solanacearum CFBP2957]
          Length = 170

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 33 NPAPGK-VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           P P    +LD   G G ++R     G  V  LDRD  A++
Sbjct: 5  APLPAGARVLDVACGRGRHARWLAARGLRVTGLDRDADALA 45


>gi|227524748|ref|ZP_03954797.1| rRNA methylase [Lactobacillus hilgardii ATCC 8290]
 gi|227088102|gb|EEI23414.1| rRNA methylase [Lactobacillus hilgardii ATCC 8290]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   +     H+  LL++ ++      G  ++D T G G  +    K+      V   D
Sbjct: 1   MNQLPNALQFSHL--LLKEAVST-----GDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDY-VPDKGVDGVVFDLGV 113
               A+      +          Q    + +++ +    +  +   +F+LG 
Sbjct: 54  IQQQALQHTISLLEKNLSGLQNVQLYKKSHAEIDNVLDNNVRISAAIFNLGY 105


>gi|227513603|ref|ZP_03943652.1| rRNA methylase [Lactobacillus buchneri ATCC 11577]
 gi|227083119|gb|EEI18431.1| rRNA methylase [Lactobacillus buchneri ATCC 11577]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   +     H+  LL++ ++      G  ++D T G G  +    K+      V   D
Sbjct: 1   MNQLPNALQFSHL--LLKEAVST-----GDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDY-VPDKGVDGVVFDLGV 113
               A+      +          Q    + +++ +    +  +   +F+LG 
Sbjct: 54  IQQQALQHTISLLEKNLSGLQNVQLYKKSHAEIDNVLDNNVRISAAIFNLGY 105


>gi|302036875|ref|YP_003797197.1| putative dihydroneopterin aldolase and SAM-dependent
           methyltransferase [Candidatus Nitrospira defluvii]
 gi|190343289|gb|ACE75677.1| putative dihydroneopterin aldolase/SAM-dependent methyltransferase
           [Candidatus Nitrospira defluvii]
 gi|300604939|emb|CBK41272.1| putative Dihydroneopterin aldolase and SAM-dependent
           methyltransferase (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 309

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV----SCGQET 77
           P   +LD   G G ++      G  V A+DRD  A+       +E 
Sbjct: 140 PKGRVLDVAAGRGRHALHLLSHGMEVEAIDRDSLALTALKEAAEER 185


>gi|313894507|ref|ZP_07828071.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440903|gb|EFR59331.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 35  APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              KV++DAT G  G+   +     + G ++  +D    A++  +E ++       +   
Sbjct: 20  KKAKVVVDATCGN-GHDLLYLAKRAQKGCHLFGIDIQMKAINTSKELLKTNDIAPDVSLT 78

Query: 91  TFSQLQDYVPDKGVDGVVFDL 111
                 D      +   V DL
Sbjct: 79  FIHDSHDLALAHQLKDEVIDL 99


>gi|310828099|ref|YP_003960456.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612]
 gi|308739833|gb|ADO37493.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612]
          Length = 208

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 41  LDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ-----FSLFQATF 92
           +DAT G G  +    +       V + D    A+   ++ +     +     F     T 
Sbjct: 45  VDATAGTGADTCLLARSVGACGKVYSFDVQKEALKETEQRLSAEGLRDRVLLFHKGHETM 104

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
             + +   D  + G++F+LG 
Sbjct: 105 GSIPELRQDSKIMGIMFNLGY 125


>gi|261420271|ref|YP_003253953.1| methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|319767081|ref|YP_004132582.1| methyltransferase type 11 [Geobacillus sp. Y412MC52]
 gi|261376728|gb|ACX79471.1| Methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|317111947|gb|ADU94439.1| Methyltransferase type 11 [Geobacillus sp. Y412MC52]
          Length = 189

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 26 EKVIALLNPAPGKVILDATFGAG-GYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81
          ++ I++L+  P   I+D   G+G GY            V A+D  P  +   ++  + +
Sbjct: 26 QQAISMLSVKPNDTIVD--LGSGNGYFTIPLAQATNGKVYAIDVQPEMIQLLKKRAQQF 82


>gi|261364723|ref|ZP_05977606.1| putative rRNA methylase [Neisseria mucosa ATCC 25996]
 gi|288567020|gb|EFC88580.1| putative rRNA methylase [Neisseria mucosa ATCC 25996]
          Length = 189

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           LL++ +      P    LD T G G  +          G  V A D    A++  +  + 
Sbjct: 13  LLKQAL-----KPDARALDGTAGNGNDT-LMLARSIGSGGKVWAFDVQEQALANTRMRLE 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +    ++  L       L  ++ +  +D  VF+ G 
Sbjct: 67  EAGMADRVELILDGHENLATHIRE-PLDAAVFNFGW 101


>gi|260557274|ref|ZP_05829490.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          19606]
 gi|260409380|gb|EEX02682.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          19606]
          Length = 194

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     E  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70

Query: 79 RDYKEQFSLFQATFSQLQ 96
          +D   +F  +  +F    
Sbjct: 71 KD-DSKFIFYHESFEDFN 87


>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
 gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
          Length = 429

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            + LL+P  G+ ILD    A  GG +    +     +V+A+D D   +S  +E ++  K 
Sbjct: 238 CVDLLDPQNGEQILD--LCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLKL 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              +         ++  D+  D ++ D   S+  +        +
Sbjct: 296 HADVRVGDGRIPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|295676911|ref|YP_003605435.1| hypothetical protein BC1002_1861 [Burkholderia sp. CCGE1002]
 gi|295436754|gb|ADG15924.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 200

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
           APG  +LD   GAG ++R F  +G  V A+DRD  A+
Sbjct: 26 IAPGGAVLDVASGAGRHARFFASLGHPVTAIDRDAAAL 63


>gi|205374580|ref|ZP_03227375.1| putative rRNA methylase [Bacillus coahuilensis m4-4]
          Length = 190

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
              G +++DAT G  G+   +         +V A D    A+   +  ++     E  +
Sbjct: 17 AVDKGDIVIDATMGN-GHDTLYLAQLVGEEGHVFAFDIQNEAIDSTRMQLKKSGITEGVT 75

Query: 87 LFQATFSQLQD 97
          L       ++D
Sbjct: 76 LIHRGHEHVKD 86


>gi|325136027|gb|EGC58637.1| putative rRNA methylase [Neisseria meningitidis M0579]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|304387944|ref|ZP_07370117.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338041|gb|EFM04178.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|325131797|gb|EGC54497.1| putative rRNA methylase [Neisseria meningitidis M6190]
 gi|325133737|gb|EGC56393.1| putative rRNA methylase [Neisseria meningitidis M13399]
 gi|325137847|gb|EGC60422.1| putative rRNA methylase [Neisseria meningitidis ES14902]
 gi|325197969|gb|ADY93425.1| putative rRNA methylase [Neisseria meningitidis G2136]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|261392882|emb|CAX50463.1| putative rRNA methyltransferase [Neisseria meningitidis 8013]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|254674314|emb|CBA10098.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|316983733|gb|EFV62714.1| rRNA methylase family protein [Neisseria meningitidis H44/76]
 gi|325200565|gb|ADY96020.1| putative rRNA methylase [Neisseria meningitidis H44/76]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|254669738|emb|CBA03926.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|325144213|gb|EGC66520.1| putative rRNA methylase [Neisseria meningitidis M01-240013]
 gi|325206408|gb|ADZ01861.1| putative rRNA methylase [Neisseria meningitidis M04-240196]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|254804629|ref|YP_003082850.1| putative rRNA methylase [Neisseria meningitidis alpha14]
 gi|254668171|emb|CBA04853.1| putative rRNA methylase [Neisseria meningitidis alpha14]
 gi|325127866|gb|EGC50772.1| putative rRNA methylase [Neisseria meningitidis N1568]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|161869691|ref|YP_001598858.1| hypothetical protein NMCC_0711 [Neisseria meningitidis 053442]
 gi|161595244|gb|ABX72904.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSE-PLNAAIFNFGW 100


>gi|325290000|ref|YP_004266181.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965401|gb|ADY56180.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 200

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
            + G ++LD T G G  +  F          V A D    AV   ++ ++D    ++  +
Sbjct: 21  ISEGDLVLDCTAGLGRDT-LFLARLVGPRGKVYAFDIQDKAVEATKKLLQDEGLLKRVEV 79

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
            QA  + L++      +   VF+LG 
Sbjct: 80  LQADHADLRE-WIKTEIKAAVFNLGF 104


>gi|226224265|ref|YP_002758372.1| hypothetical protein Lm4b_01675 [Listeria monocytogenes Clip81459]
 gi|225876727|emb|CAS05436.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 192

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++D T G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDTTCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|256394198|ref|YP_003115762.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256360424|gb|ACU73921.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 252

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALD 65
          +VI  L   PG  ++D   G GGY        G+ +I +D
Sbjct: 51 EVIEALRLEPGTRLVDLACGRGGYGLEMAARTGATLIGID 90


>gi|6478279|gb|AAF13789.1|AF129501_4 unknown [Buchnera aphidicola]
          Length = 28

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVIL 41
           I  H PV+ +++I  L      + +
Sbjct: 3  DILKHFPVMKKELIQSLKIKKNGIYI 28


>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 430

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
            +      H        + LL+P  G+ ILD     GG +    +     +V+A+D D  
Sbjct: 230 TVQDASAQH-------CVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDEN 282

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +   +E +   ++Q  +        + +  DK  D ++ D   S+  +        +
Sbjct: 283 RLRRVKENLHRLQQQAEVKCGDGRYPEKWCGDKQFDRILLDAPCSATGVIRRHPDIKW 340


>gi|303228827|ref|ZP_07315641.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516539|gb|EFL58467.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK-----EQF 85
               V++DAT G  G+   +     +   ++  +D    AVS  +E +   K        
Sbjct: 20  KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            L  +    L   + +  +D ++F+LG 
Sbjct: 79  FLHNSHDIALHQEIKENTIDLIIFNLGY 106


>gi|329120638|ref|ZP_08249301.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460862|gb|EGF07196.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 200

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 35  APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETM--RDYKEQFSLF 88
             G   LD T G  G+              V A D  P A++  ++ +      +Q  L 
Sbjct: 24  KSGGRALDGTAGN-GHDTLLLAWLAGEDGIVWAFDVQPQALANTKDRLKTAGADKQVRLI 82

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
            A+ ++L DYV +  +D  +F+ G 
Sbjct: 83  CASHARLADYVAE-PLDAAMFNFGY 106


>gi|183982927|ref|YP_001851218.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
 gi|183176253|gb|ACC41363.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
          Length = 252

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
            L   PG  ++D   GAG ++    + G++V+A DRD   +      +R  
Sbjct: 7  DRLGIGPGATVIDVGCGAGRHAFEAYRCGADVVAFDRDAAELRAVDTMLRAM 58


>gi|261378773|ref|ZP_05983346.1| putative rRNA methylase [Neisseria cinerea ATCC 14685]
 gi|269144749|gb|EEZ71167.1| putative rRNA methylase [Neisseria cinerea ATCC 14685]
          Length = 188

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 36  PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
            G   LD T G  G+   F          V A D  P A++  Q  +++   + +     
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGILGKVWAFDIQPQALTLTQCRLKEAGYENAQLILD 78

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             +       + ++  +F+ G 
Sbjct: 79  GHENLKQYVSEPLNAAIFNFGW 100


>gi|317130009|ref|YP_004096291.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522]
 gi|315474957|gb|ADU31560.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522]
          Length = 192

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFS 86
               G V++DAT G G  +  F          V + D    A++  ++ + +        
Sbjct: 18  AVTEGDVVIDATAGKGNDT-LFLSKLVSNTGKVYSFDIQEAAITATRKKLAENNQDSNVQ 76

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL 111
           L      +L +Y+     + +   +
Sbjct: 77  LIHDGHEKLLNYLDQDDYENIAGAI 101


>gi|42783939|ref|NP_981186.1| hypothetical protein BCE_4893 [Bacillus cereus ATCC 10987]
 gi|42739869|gb|AAS43794.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 190

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)

Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRD 80
              G   +DAT G G  +            V   D    A+      +++
Sbjct: 17 AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKE 67


>gi|161936282|ref|YP_131495.2| ribosomal protein L11 methyltransferase [Photobacterium profundum
           SS9]
 gi|60390454|sp|Q6LLY5|PRMA_PHOPR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
          Length = 294

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK I+D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLVGKTIID--FGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRDNAERNG 206


>gi|46914918|emb|CAG21693.1| putative ribosomal protein L11 methyltransferase [Photobacterium
           profundum SS9]
          Length = 317

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK I+D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 172 CLEWLDGQDLVGKTIID--FGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRDNAERNG 229


>gi|295133869|ref|YP_003584545.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia
           profunda SM-A87]
 gi|294981884|gb|ADF52349.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia
           profunda SM-A87]
          Length = 411

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG  ++D   GAGG   +  +  +    VIALD
Sbjct: 216 VADFLDVKPGDRVVDTCAGAGGKSLHLAALMENKGQVIALD 256


>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
 gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
           turicensis z3032]
          Length = 425

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            + LL P  G+ ILD    A  GG +    +     NV+A+D D   +S   E ++  K 
Sbjct: 234 CVELLAPQNGETILD--LCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKRVKM 291

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +          +  D   D ++ D   S+  +        +
Sbjct: 292 RAEVKVGDGRFPATWCGDMQFDRILLDAPCSATGVIRRHPDIKW 335


>gi|303232176|ref|ZP_07318879.1| methyltransferase domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513282|gb|EFL55321.1| methyltransferase domain protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 191

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK-----EQF 85
               V++DAT G  G+   +     +   ++  +D    AVS  +E +   K        
Sbjct: 20  KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            L  +    L   + +  +D ++F+LG 
Sbjct: 79  FLHNSHDIALHQEIKENTIDLIIFNLGY 106


>gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
 gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
          Length = 283

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           DAT      G GG +R+    G+  VIA++RD  A+   ++  R Y  +  +        
Sbjct: 48  DATVIEIGPGPGGLTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDF 107

Query: 96  QDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
                 D     +V +L  +   +       +       DM +       ++ +
Sbjct: 108 DPTTMLDGARARIVANLPYNIATLLLTGWLTADPWPPWFDMMVLMFQREVAERI 161


>gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
 gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
          Length = 435

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL    GKV++DA    GG +    +  +   +IA+D+DP  +    E +          
Sbjct: 242 LLPDLDGKVVVDACAAPGGKTAHILERFNPKKLIAIDQDPKRIVRIGENLERLALNLDNV 301

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
           +   +    +   + VD +V D   S
Sbjct: 302 EILVADATTWQAQEPVDCIVLDAPCS 327


>gi|291532848|emb|CBL05961.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Megamonas hypermegale
           ART12/1]
          Length = 196

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-------QFSLF 88
           +I+DAT G G  +    +     + + A D    A+   +  +   K+         S  
Sbjct: 24  IIVDATAGNGNDTLFLAQNTLNNAQIYAFDIQKEAIENTKALLIKNKDNINLPLENISFI 83

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
             +   + +Y     +D  +F+LG 
Sbjct: 84  HDSHEHIDNY-IQTKIDIAIFNLGY 107


>gi|240141547|ref|YP_002966027.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|240011524|gb|ACS42750.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens AM1]
          Length = 216

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79
           P+LL ++I  L   PG   LD   G G GY  +  +     V+AL+ DP  +   +E + 
Sbjct: 68  PMLLARLIQALKIRPGTRALD--VGTGYGYGAAVLRQLGAEVVALESDPDLIGAARERLG 125

Query: 80  DYKEQFS 86
           D      
Sbjct: 126 DTVNLVQ 132


>gi|328954204|ref|YP_004371538.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
 gi|328454528|gb|AEB10357.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
          Length = 188

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 14/78 (17%)

Query: 13 IHHTIGDHVP----------VLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC---KMG 58
          ++     H P          +L +++I   L+  PG VILDA  G G  S+ F    K  
Sbjct: 1  MNQEKETHKPHQHAGRSSERLLNKEIILKELDIFPGAVILDAGCGNGYMSKEFSRMQKNS 60

Query: 59 SNVIALDRDPFAVSCGQE 76
            + ALD D  A+   ++
Sbjct: 61 GKIFALDPDKNAIEILRQ 78


>gi|224542049|ref|ZP_03682588.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524982|gb|EEF94087.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM
          15897]
          Length = 171

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 39 VILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
          + +D T G  G+ +++  +    V + D    A+   +E + D           F    D
Sbjct: 20 IGVDFTMGN-GHDTKALIECCKEVYSFDIQEEALIHTRELVGDKAHLIHDSHENFDHYVD 78


>gi|195953944|ref|YP_002122234.1| Methyltransferase type 12 [Hydrogenobaculum sp. Y04AAS1]
 gi|195933556|gb|ACG58256.1| Methyltransferase type 12 [Hydrogenobaculum sp. Y04AAS1]
          Length = 746

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 19/239 (7%)

Query: 56  KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
                V  +D D  A+S  ++    YK+ F L        +D          +FD  +  
Sbjct: 348 NKNCQVYGIDIDADAISYVKDR-GYYKDVFLLDLDYLQNTKDEYERFLQLKEMFDFIICG 406

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
             ++             +  ++   G     V N A++  +  +L       + +     
Sbjct: 407 NVLEHLKN--PTNALDFITSKLKFGGQVLVSVPNIAHMDIILNLLQ-----GRFNYSEFG 459

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I+       F     L  +      F K        +               +++ L   
Sbjct: 460 ILDNTHLRFFTKRSFLEWIK-NANEFYKEKGFKFDVKYLGG--------TTYISEFLEDI 510

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKV 292
           +        +I+   H LE           +G      +  +I S  +P +F+ I+ K+
Sbjct: 511 KVKYSNLYNMILSGNHDLEILQHIFVLTKINGLANTYNLNDLIESTEYPDIFKIISSKI 569


>gi|313668775|ref|YP_004049059.1| hypothetical protein NLA_14850 [Neisseria lactamica ST-640]
 gi|313006237|emb|CBN87699.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 188

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +V+       G   LD T G  G+   F          V ALD  P A++  +  ++
Sbjct: 13  LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWALDIQPQALNNTRCRLQ 66

Query: 80  DYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +       L       L+ YV +  ++  +F+ G 
Sbjct: 67  EAGYSNVRLILDGHENLKQYVSE-PLNAAIFNFGW 100


>gi|188584795|ref|YP_001916340.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349482|gb|ACB83752.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK--EQFSL 87
            + G  ++DAT G  G+ +        +   V A D    A+    + ++     E+  L
Sbjct: 21  ISQGDRVVDATCGN-GHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRL 79

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                 +L +   +  V  V+F+LG 
Sbjct: 80  LNKGHEKLIE-DVEGPVSCVMFNLGY 104


>gi|223043516|ref|ZP_03613561.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus capitis SK14]
 gi|314933913|ref|ZP_07841278.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus caprae C87]
 gi|222443004|gb|EEE49104.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus capitis SK14]
 gi|313654063|gb|EFS17820.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus caprae C87]
          Length = 187

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 39  VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQ 94
           +++DAT G G  +    +      V   D    A+   Q  + D+              Q
Sbjct: 23  IVIDATCGNGNDTLYLAEKVTNGFVYGFDIQKEAIDNTQLKVSDFNNVSLIQDSHENVKQ 82

Query: 95  LQDYVPDKGVDGVVFDLGV 113
                    +D  +F+LG 
Sbjct: 83  HVLERHLNLIDCAIFNLGY 101


>gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86
          G GG +R+    G+  VIA++RD  A++  +E    +  + +
Sbjct: 27 GPGGLTRALLTEGARKVIAIERDQRAIAALEEIAEHHPGRLT 68


>gi|84488917|ref|YP_447149.1| CbiT [Methanosphaera stadtmanae DSM 3091]
 gi|84372236|gb|ABC56506.1| CbiT [Methanosphaera stadtmanae DSM 3091]
          Length = 191

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 32/82 (39%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           VI+ +      V++D   G GG +  F K    + ++D +P A+   +  +  +  Q  +
Sbjct: 29  VISKVKLTDEDVVVDVGCGTGGLTLEFAKRAKKIYSIDMNPDAIKTTRANLEKFGLQNKV 88

Query: 88  FQATFSQLQDYVPDKGVDGVVF 109
                  L+     +    ++ 
Sbjct: 89  ELIEDEGLKALDHIEDFTKLMI 110


>gi|206901460|ref|YP_002250835.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus
           thermophilum H-6-12]
 gi|206740563|gb|ACI19621.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus
           thermophilum H-6-12]
          Length = 252

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETMRDYKEQFSLF 88
           ++L+   G +ILD   G G ++    K G   I +DR    +   + E  +D       +
Sbjct: 38  SILSIKRGHLILDLGCGFGRHTLELGKRGYRTIGIDRSEDLIEIAKEEAKKDRVFNVEFY 97

Query: 89  QATFSQLQDYVPDKGVDGVVF 109
              +  ++       V   ++
Sbjct: 98  VMEYKDIEKLGYKFDVVFSLY 118


>gi|307152137|ref|YP_003887521.1| type 11 methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982365|gb|ADN14246.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822]
          Length = 265

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           L++  PG+ ILDA  G G +S    K    V+A+D     +   Q+ 
Sbjct: 40 KLMDIQPGETILDAGCGPGVHSIRLAKKNIKVLAIDISKTMLREAQKR 87


>gi|258438327|ref|ZP_05689611.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257848371|gb|EEV72362.1| conserved hypothetical protein [Staphylococcus aureus A9299]
          Length = 187

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
             P  ++ DAT G G  +    +     +V   D    A+   ++ ++D+          
Sbjct: 18  ITPESIVADATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                  +      +D  +F+LG 
Sbjct: 78  ENIEHHINDAHKGHIDAAIFNLGY 101


>gi|189349594|ref|YP_001945222.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC
          17616]
 gi|189333616|dbj|BAG42686.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC
          17616]
          Length = 356

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            ++D   G  GYS          +    D D  A+    E       QF
Sbjct: 28 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQF 76


>gi|149372985|ref|ZP_01891941.1| putative sun protein [unidentified eubacterium SCB49]
 gi|149354345|gb|EDM42912.1| putative sun protein [unidentified eubacterium SCB49]
          Length = 403

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           L+P PG+ I+DA  GAGG   +     +    +I++D
Sbjct: 219 LDPKPGQRIVDACAGAGGKSLHISEMMENKGQLISMD 255


>gi|206969833|ref|ZP_03230787.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206735521|gb|EDZ52689.1| conserved hypothetical protein [Bacillus cereus AH1134]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|30264819|ref|NP_847196.1| hypothetical protein BA_5002 [Bacillus anthracis str. Ames]
 gi|47530304|ref|YP_021653.1| hypothetical protein GBAA_5002 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187638|ref|YP_030891.1| hypothetical protein BAS4647 [Bacillus anthracis str. Sterne]
 gi|65322120|ref|ZP_00395079.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
 gi|165869764|ref|ZP_02214422.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167633949|ref|ZP_02392272.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638131|ref|ZP_02396409.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170685777|ref|ZP_02877000.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170705366|ref|ZP_02895830.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177651183|ref|ZP_02934014.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568308|ref|ZP_03021216.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817544|ref|YP_002817553.1| hypothetical protein BAMEG_5036 [Bacillus anthracis str. CDC 684]
 gi|229604073|ref|YP_002869027.1| hypothetical protein BAA_5015 [Bacillus anthracis str. A0248]
 gi|254687560|ref|ZP_05151416.1| hypothetical protein BantC_27450 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725125|ref|ZP_05186908.1| hypothetical protein BantA1_22099 [Bacillus anthracis str. A1055]
 gi|254736863|ref|ZP_05194569.1| hypothetical protein BantWNA_16981 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741898|ref|ZP_05199585.1| hypothetical protein BantKB_12908 [Bacillus anthracis str. Kruger
           B]
 gi|254754504|ref|ZP_05206539.1| hypothetical protein BantV_18637 [Bacillus anthracis str. Vollum]
 gi|254757337|ref|ZP_05209364.1| hypothetical protein BantA9_03431 [Bacillus anthracis str.
           Australia 94]
 gi|30259494|gb|AAP28682.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47505452|gb|AAT34128.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181565|gb|AAT56941.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164714593|gb|EDR20112.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513948|gb|EDR89316.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167530750|gb|EDR93452.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170129491|gb|EDS98354.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170670241|gb|EDT20981.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172083009|gb|EDT68071.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190560564|gb|EDV14541.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006163|gb|ACP15906.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229268481|gb|ACQ50118.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F          V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           L   +   L   +P+     V G +F+LG        I       +      L   M+  
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134

Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166
           GI    + +      + R  +    EE
Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
 gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
          Length = 455

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 31  LLNPAPGKVILDATFGA--GG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQ 84
           LL+P PG+V++D    A  GG   +          + A D D   +   QE +       
Sbjct: 260 LLDPKPGEVVID--LCAAPGGKTEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRCGISI 317

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +F     +  + +     D V+ D   +S      ++   ++
Sbjct: 318 VKIFNEDARKATEILGRNIADKVLVDAPCTSSGTIMKNQELRWR 361


>gi|241758659|ref|ZP_04756773.1| methylase protein [Neisseria flavescens SK114]
 gi|241321170|gb|EER57366.1| methylase protein [Neisseria flavescens SK114]
          Length = 189

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LDAT G  G+              V A D    A+   Q  ++
Sbjct: 13  LLRQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQSKALMQTQGRLK 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     + +L       L  Y+ +  +D  VF+ G 
Sbjct: 67  ENGVDGRVALIHGGHENLLSYIDE-PLDAAVFNFGW 101


>gi|332522836|ref|ZP_08399088.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314100|gb|EGJ27085.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176]
          Length = 182

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQATFSQL 95
             +++DAT G G  +  F      + A D    A+   +E + +   E   L Q    ++
Sbjct: 19  NSILVDATMGNGNDTLYFAPKVKRLYAFDVQEKALQVTREKLQKAQLENVQLIQDGHEKV 78

Query: 96  QDYVPDKGVDGVVFDLGV 113
            DY+    VD  +F+LG 
Sbjct: 79  DDYLDQ--VDAAIFNLGY 94


>gi|218905984|ref|YP_002453818.1| hypothetical protein BCAH820_4872 [Bacillus cereus AH820]
 gi|218536553|gb|ACK88951.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80
              G   +DAT G  G+   F          V   D    A+      +++
Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKE 67


>gi|329664270|ref|NP_001192627.1| trimethylguanosine synthase [Bos taurus]
 gi|297482318|ref|XP_002692697.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296480654|gb|DAA22769.1| hypothetical protein BOS_13850 [Bos taurus]
          Length = 852

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93
               I+DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F 
Sbjct: 689 ESGTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEIYGVVDKIEFICGDFL 748

Query: 94  QL 95
           QL
Sbjct: 749 QL 750


>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 426

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
             LN   G++ILD     GG +    +      V+A+D D   +    + ++  +   ++
Sbjct: 237 DFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNATV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   +++   +  D ++ D   S+  +        +
Sbjct: 297 ICGDARNPEEWWQGEKFDRILLDAPCSATGVIRRHPDIKW 336


>gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|50401583|sp|Q8ES75|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768
 gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 459

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL +K +   N     V++DA  G G  S    +    V  ++  P A+   +       
Sbjct: 296 VLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEING 355

Query: 83  EQ 84
             
Sbjct: 356 MN 357


>gi|297588509|ref|ZP_06947152.1| MraW methylase family SAM-dependent methyltransferase [Finegoldia
           magna ATCC 53516]
 gi|297573882|gb|EFH92603.1| MraW methylase family SAM-dependent methyltransferase [Finegoldia
           magna ATCC 53516]
          Length = 179

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 39  VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           + LD TFG G  S     +  N  V   D     +   ++   D  +  +     F +  
Sbjct: 23  ICLDMTFGNGNDSYKMLSINENIEVYGFDVQKSCIDNARKI--DNLKVINDSHLNFEKYT 80

Query: 97  DYVPDKGVDGVVFDLG 112
           +   D  V  + +  G
Sbjct: 81  NEKIDFAVFNLGYLPG 96


>gi|87240722|gb|ABD32580.1| SAM (and some other nucleotide) binding motif; WW/Rsp5/WWP
           [Medicago truncatula]
          Length = 681

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           G  ++D   GAGG +  F +   +V+A+D DP  +   +     Y+
Sbjct: 515 GGTLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYR 560


>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
 gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
          Length = 426

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +    ++V+A+D D   +    E +     +  +
Sbjct: 237 EYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLERLNLKAQV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   +++   +  D ++ D   S+  +        +
Sbjct: 297 ICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|315924793|ref|ZP_07921010.1| rRNA methylase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621692|gb|EFV01656.1| rRNA methylase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQA 90
           PG   LDAT G G  +    +       V   D    A++  ++ + +  +      +  
Sbjct: 22  PGDSALDATVGTGEDACFLAEAVGATGRVYGFDIQKAALTMARDKLAERQWAGPVHWYHQ 81

Query: 91  TFSQL---QDYVPDKGVDGVVFDLGV 113
               L    + V D  +   +F+LG 
Sbjct: 82  GHETLGTVPEIVQDSRIRAAMFNLGY 107


>gi|302871656|ref|YP_003840292.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574515|gb|ADL42306.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 314

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 3   SKSCKTMSSAIHHTIGDHVP-VLLEKVIALLNPAPGKVILD-ATFGAGGYSRSFCKMGS- 59
           SK+   +   +    G H   VL  + I      PG  +LD  T G+G        + + 
Sbjct: 135 SKTIVRLDPGMAFGTGTHESTVLCLEAIQN-YVKPGMNVLDVGT-GSG-----ILAIAAK 187

Query: 60  -----NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
                 V+A+D D  AV   +E       +  + +    +  +   D  V  +V D+ + 
Sbjct: 188 KLLAKRVLAVDIDEVAVKVAKENANLNGVEIEIKKNNLVEGIEEKFDIVVANIVADIIIR 247

Query: 115 SMQIDCGDRG 124
                     
Sbjct: 248 LSTYVNRVLK 257


>gi|161525683|ref|YP_001580695.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|160343112|gb|ABX16198.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            ++D   G  GYS          +    D D  A+    E       QF
Sbjct: 31 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQF 79


>gi|237809272|ref|YP_002893712.1| 50S ribosomal protein L11 methyltransferase [Tolumonas auensis DSM
           9187]
 gi|259534600|sp|C4LAF1|PRMA_TOLAT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|237501533|gb|ACQ94126.1| ribosomal protein L11 methyltransferase [Tolumonas auensis DSM
           9187]
          Length = 292

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYKEQF 85
           +  L+   GK ++D  FG G    +    K+G+  VI +D DP A+   ++  +      
Sbjct: 150 LDSLDLK-GKTLVD--FGCGSGILAIAALKLGAERVIGIDIDPQAIEASRDNAQ------ 200

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
                   QL+ Y+P+        D+ V+++  
Sbjct: 201 --RNGVSDQLELYLPEDQPKNFQADIVVANILA 231


>gi|167574653|ref|ZP_02367527.1| ribosomal protein L11 methyltransferase [Burkholderia oklahomensis
           C6786]
          Length = 300

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +         +V  +D DP AV   ++     +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGSVTGIDIDPQAVEAARQNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVAY 217


>gi|302841478|ref|XP_002952284.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f.
          nagariensis]
 gi|300262549|gb|EFJ46755.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f.
          nagariensis]
          Length = 272

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 13/46 (28%)

Query: 31 LLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDP 68
           L P PG  ++D         T     +  +  K    V+A D+DP
Sbjct: 38 ALAPEPGWTVVDCCAAPGNKTT-----HLAAIMKNQGRVLAFDKDP 78


>gi|29840531|ref|NP_829637.1| hypothetical protein CCA00774 [Chlamydophila caviae GPIC]
 gi|29834880|gb|AAP05515.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 198

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 36  PGKVILDATFGAGGYSR------SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           PG  ++DAT G G   +         K    +IA D    A++                 
Sbjct: 27  PGDTVVDATCGNG---KDCLILARLLKGKGKLIAYDVQKEALNRTALLCSKSLSPEERSV 83

Query: 90  ATFSQL-QDYVPDKGVDGVVFDLGV 113
             F ++  +++ + G     ++LG 
Sbjct: 84  IEFKEMSHEHINEAGAKLFHYNLGY 108


>gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1]
 gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1]
          Length = 403

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG  ++D   GAGG   +  +  +    VIA+D
Sbjct: 216 VADFLDVKPGMKVVDVCAGAGGKTLHLAALMENKGQVIAMD 256


>gi|196041491|ref|ZP_03108784.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196027739|gb|EDX66353.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 13/146 (8%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
               G   +DAT G G  +            V   D    A+      +++ +  E+  L
Sbjct: 17  AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKEKELFERTVL 76

Query: 88  FQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCSG 141
              +   L   +P+     V G +F+LG        I       +      L   M+  G
Sbjct: 77  VHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPEG 135

Query: 142 ISASDVVNQANVKDLTRI-LGILGEE 166
           I    + +      + R  +    EE
Sbjct: 136 IIVLVIYHGHPEGQVERDAVLKFAEE 161


>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
          Length = 449

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
           +LNP PG+VI+D     GG   +     K    + A D D   +   +E +     +   
Sbjct: 254 ILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDKTRMKRLKEFVNRMGIKIVK 313

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  +  + + ++  D V+ D   +S      +    ++
Sbjct: 314 PIIKDGRKAPEILGEEIADRVLLDAPCTSSGTIGKNPELRWR 355


>gi|28378064|ref|NP_784956.1| methyltransferase (putative) [Lactobacillus plantarum WCFS1]
 gi|28270898|emb|CAD63803.1| methyltransferase (putative) [Lactobacillus plantarum WCFS1]
          Length = 197

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78
           L+ +V+      PG  ++DAT G  G+   +         +V   D    A+      + 
Sbjct: 22  LMNQVVN-----PGDHVIDATVGN-GHDTVYLAKLVGTTGHVDGFDIQSAAIEATTTALD 75

Query: 79  -RDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGV 113
                 Q +L+Q     + D    D+ +   VF+LG 
Sbjct: 76  KAALTHQVTLWQTGHEHIADKIAADQPIKCAVFNLGY 112


>gi|167837954|ref|ZP_02464813.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           MSMB43]
          Length = 300

 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            +  L     PG+ +LD  +G G    +         +V  +D DP AV   ++     +
Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGSVTGIDIDPQAVEAARQNSERNR 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 TDVAY 217


>gi|289192404|ref|YP_003458345.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanocaldococcus sp. FS406-22]
 gi|288938854|gb|ADC69609.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanocaldococcus sp. FS406-22]
          Length = 186

 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          VP+  E++    I  LN     V++D   G+GG +    +    V A+D    A+   ++
Sbjct: 19 VPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIARRCKFVYAIDYLEDAIEVTKQ 78

Query: 77 TMRDYK 82
           +  + 
Sbjct: 79 NLAKFN 84


>gi|13541750|ref|NP_111438.1| precorrin-6Y methylase [Thermoplasma volcanium GSS1]
 gi|48428139|sp|Q97A64|CBIT_THEVO RecName: Full=Probable cobalt-precorrin-6Y
          C(15)-methyltransferase [decarboxylating]
 gi|14325163|dbj|BAB60088.1| precorrin-8w decarboxylase [Thermoplasma volcanium GSS1]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 21 VPVLLEK-----VIALLNPAPGKVILD-ATFGAGG----YSRSFCKMGSNVIALDRDPFA 70
          +P + ++      +  L    G   LD  T G G      SR        +IALDRD  A
Sbjct: 25 IP-MTKEEIRLISLNRLGVRNGGHFLDIGT-GTGSVAVDMSR-LAGPNGKIIALDRDEKA 81

Query: 71 VSCGQETM 78
          +   +  +
Sbjct: 82 IKLARINL 89


>gi|169829678|ref|YP_001699836.1| SAM-dependent methyltransferase [Lysinibacillus sphaericus C3-41]
 gi|168994166|gb|ACA41706.1| SAM-dependent methyltransferase [Lysinibacillus sphaericus C3-41]
          Length = 192

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL+  +       G  ++DAT G  G+   F          V A D    AV      + 
Sbjct: 13  LLKDSVE-----EGDTVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKKAVDATLHRLL 66

Query: 80  DYKEQFS--LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D   +    +      ++ +++    V   +F+LG 
Sbjct: 67  DQSLEHRALVLNKGHEEVANFIHK-PVAAAIFNLGY 101


>gi|305667349|ref|YP_003863636.1| putative sun protein [Maribacter sp. HTCC2170]
 gi|88709397|gb|EAR01630.1| putative sun protein [Maribacter sp. HTCC2170]
          Length = 403

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG+ ++D   GAGG   +  +  +    +IALD
Sbjct: 216 VSEFLDVQPGQRVVDTCAGAGGKTLHLAALMQNKGQLIALD 256


>gi|254820874|ref|ZP_05225875.1| hypothetical protein MintA_13150 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 252

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
            L   P   ++D   GAG ++    + G++V+A DRD   +      +R   + 
Sbjct: 7  DRLGIGPSSKVIDVGCGAGRHAFEAYRRGADVVAFDRDEDELRSVDTILRAMADN 61


>gi|269797986|ref|YP_003311886.1| rRNA methylase [Veillonella parvula DSM 2008]
 gi|269094615|gb|ACZ24606.1| putative rRNA methylase [Veillonella parvula DSM 2008]
          Length = 191

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 39  VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           V++DAT G  G+   +     +   ++  +D    A+   +E ++       +       
Sbjct: 24  VVVDATCGN-GHDLLYLSKRAQKACHLYGIDIQMKAIKTSKELLQSNDIAPEVSLTFIHD 82

Query: 95  LQDYVPDKGVDGVVFDL 111
             D      +   V DL
Sbjct: 83  SHDLAVAHQLKDEVIDL 99


>gi|238019301|ref|ZP_04599727.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748]
 gi|237864000|gb|EEP65290.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748]
          Length = 191

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 39  VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKE----QFSLFQA 90
           V++DAT G  G+   +     + G ++  +D    A++  QE ++          +    
Sbjct: 24  VVVDATCGN-GHDLLYLAERARKGCHLYGIDIQMKAINSSQELLQSNDIAEDVSLTFIHD 82

Query: 91  TFSQ-LQDYVPDKGVDGVVFDLGV 113
           +  + L + + D+ +D ++F+LG 
Sbjct: 83  SHDRALVNQLKDEVIDLMIFNLGY 106


>gi|325478511|gb|EGC81624.1| putative rRNA methylase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 181

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 41  LDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +D T G G  S           ++A D    A    +  + + +  F     + + +  Y
Sbjct: 23  VDMTAGNGNDSLFILDKIKAKRLVAFDIQKEAEEATKNLLGEREN-FLFILDSHANIDQY 81

Query: 99  VPDKGVDGVVFDLGV 113
              K +D  V++LG 
Sbjct: 82  -IKKKIDLAVYNLGY 95


>gi|322420924|ref|YP_004200147.1| rRNA methylase [Geobacter sp. M18]
 gi|320127311|gb|ADW14871.1| rRNA methylase [Geobacter sp. M18]
          Length = 195

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK 82
            PG + +DAT G G  + +           V A D    A+S  +E +    
Sbjct: 26 VRPGDLAVDATCGNGFDT-ALLAQLAGETGRVWAFDVQARAISATRELLEREG 77


>gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 242

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           P    V++DA  GAGG S +F K G    V A+++DP  ++C +   + Y          
Sbjct: 72  PKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKDPAVLACAKHNAKIYG--VQSKITW 129

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151
           F         + +   + DLG  S+       G    +S  +    +    S   +  + 
Sbjct: 130 FEG----DCFEILKTHLKDLGFYSVVFASPPWGGPGYRSDEVFNLQTMEPYSLGHLYREY 185

Query: 152 NVKDLTRILG 161
           +      +L 
Sbjct: 186 SAFSKHIVLY 195


>gi|184159316|ref|YP_001847655.1| putative tellurite resistance protein-related protein
          [Acinetobacter baumannii ACICU]
 gi|332872577|ref|ZP_08440546.1| methyltransferase domain protein [Acinetobacter baumannii
          6014059]
 gi|183210910|gb|ACC58308.1| putative tellurite resistance protein-related protein
          [Acinetobacter baumannii ACICU]
 gi|322509227|gb|ADX04681.1| SAM-dependent methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323519256|gb|ADX93637.1| putative tellurite resistance protein-related protein
          [Acinetobacter baumannii TCDC-AB0715]
 gi|332739263|gb|EGJ70121.1| methyltransferase domain protein [Acinetobacter baumannii
          6014059]
          Length = 194

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     +  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTDRF 70

Query: 79 RDYKEQFSLFQATFSQLQ 96
          +D   +F  +  +F    
Sbjct: 71 KD-DSKFIFYHESFEDFN 87


>gi|303242307|ref|ZP_07328793.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302590146|gb|EFL59908.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 189

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
              H   +H    +E+         G  ++DAT G G  +    K+     +V + D   
Sbjct: 9   TQSHKYIEHF---VEE---------GDTVIDATAGNGSDTVFLAKLVGESGHVYSFDVQQ 56

Query: 69  FAVSCGQETMR--DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            A+    E +   D +++  L       L +Y     V  V+F+LG 
Sbjct: 57  IALDRTAEKLDSLDLRDRVDLINDGHENLDNY-VKSKVKAVMFNLGY 102


>gi|160881322|ref|YP_001560290.1| methyltransferase type 11 [Clostridium phytofermentans ISDg]
 gi|160429988|gb|ABX43551.1| Methyltransferase type 11 [Clostridium phytofermentans ISDg]
          Length = 247

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 4/140 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            +  L    GK ILD   G GGYSR   + G+ V A+D   F ++      ++     + 
Sbjct: 35  TLQQLGNVSGKRILDLGCGEGGYSRELAQRGALVTAIDCSEFFINYSTNKAKEQGLHITH 94

Query: 88  FQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           F      L D   +         ++ D       ++   R           +   C    
Sbjct: 95  FIRNSCDLYDIQDNYFDIVLCSMMLMDCENLDGTVNEIARVLKSGGKVFASVLHPCFKGK 154

Query: 144 ASDVVNQANVKDLTRILGIL 163
             +   + N   +  +    
Sbjct: 155 DINWTGEGNESMVVFVKNYF 174


>gi|55379669|ref|YP_137519.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55232394|gb|AAV47813.1| methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 252

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 28 VIALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
          V+ LL+P PG+ +LD   G G G+ +      G+ V+ +  D  A    Q         F
Sbjct: 25 VVDLLDPHPGEQVLD--VGCGTGHLTAEIADSGAEVVGI--DASAEMVAQARDAYPTLTF 80

Query: 86 SL 87
            
Sbjct: 81 EQ 82


>gi|148717309|dbj|BAF63640.1| hypothetical protein [Crassostrea gigas]
          Length = 342

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 46  GAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK 102
           G G +SR   K+     + A+D D F++   ++ +     +          QL +   +K
Sbjct: 167 GFGKHSREVAKLYPRSKITAIDMDQFSIDNAKKELTKSGLKNIEYLCMKGGQLPEKWANK 226

Query: 103 GVDGVVFDLGVSSMQIDCGDRGF 125
               ++ D+   S ++D   +G 
Sbjct: 227 FDFVIINDVLHDSYEVDEILKGI 249


>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
 gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
          Length = 429

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            + LL+P  G+ ILD    A  GG +    +     +V+A+D D   +   +E ++  + 
Sbjct: 238 CVDLLDPQDGEQILD--LCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLRL 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              + Q      Q +  DK  D ++ D   S+  +        +
Sbjct: 296 HAEVKQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Alteromonadales
           bacterium TW-7]
 gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Alteromonadales
           bacterium TW-7]
          Length = 431

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
            L P    VILDA    GG +    +   ++V+ALD D   +   ++ +        L  
Sbjct: 242 FLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRIGLGADLQC 301

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              SQ   +  D+  D ++ D+  S+  +        +
Sbjct: 302 GDASQPHTWWDDEQFDRILLDVPCSATGVIRRHPDIKW 339


>gi|255085586|ref|XP_002505224.1| predicted protein [Micromonas sp. RCC299]
 gi|226520493|gb|ACO66482.1| predicted protein [Micromonas sp. RCC299]
          Length = 226

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG--------------SNVIALDRDPFAVSCGQETMR- 79
            PG  ++DAT G G  + +  ++                 V+A D    A++  +  +R 
Sbjct: 40  RPGDTVVDATMGNGWDTVALARILADLDASPAGDASKPGRVVAFDVQEDALTSTRARVRE 99

Query: 80  ----DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               D   +  L   +  +++++V    V  V F+LG 
Sbjct: 100 MLTPDQASRVDLVLKSHERMEEHVRTDAVGVVCFNLGY 137


>gi|83748247|ref|ZP_00945273.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551]
 gi|207722880|ref|YP_002253314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|207743515|ref|YP_002259907.1| hypothetical protein RSIPO_01694 [Ralstonia solanacearum IPO1609]
 gi|83725088|gb|EAP72240.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551]
 gi|206588064|emb|CAQ18644.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206594913|emb|CAQ61840.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 188

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 28 VIALLNPAPGK-VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          V+    P P    +LD   G G ++R     G  V  LDRD  A++
Sbjct: 18 VVRWAAPLPAGARVLDIACGRGRHARWLAARGLRVTGLDRDADALA 63


>gi|90581289|ref|ZP_01237086.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
 gi|90437528|gb|EAS62722.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
          Length = 294

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 23/144 (15%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDSQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAE--- 203

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
                       L+ Y+P     G+  D+ V+++      R  S      +         
Sbjct: 204 -----RNGVSDNLELYLPQDQPQGIQADVVVANILAG-PLRELSPVIKSLVKDGGD---- 253

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
                ++         +     +E
Sbjct: 254 ---LAISGVLESQAADVSTYYSDE 274


>gi|125974460|ref|YP_001038370.1| methyltransferase type 11 [Clostridium thermocellum ATCC 27405]
 gi|256005184|ref|ZP_05430152.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360]
 gi|281418987|ref|ZP_06250005.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|125714685|gb|ABN53177.1| Methyltransferase type 11 [Clostridium thermocellum ATCC 27405]
 gi|255990838|gb|EEU00952.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360]
 gi|281407444|gb|EFB37704.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|316941597|gb|ADU75631.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313]
          Length = 244

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I      PG  ILD   G+GGYS    K G  V A+D +   V   ++   +     + F
Sbjct: 25  IKNCAGKPGGKILDVACGSGGYSVELAKEGYLVTAVDIEEEMVEKVKKKASENGLSINAF 84

Query: 89  QATFSQLQDYVPDKGVDGVVF 109
           +    +L+  + ++       
Sbjct: 85  KCDMRELEKKIGERFDTIFCI 105


>gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 246

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 26 EKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
          E+V+ L+     PAPG  ILD   G G ++R   + G  V  +D    A+   +E     
Sbjct: 26 EQVVDLIERLVRPAPGSEILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERAEAE 85

Query: 82 K 82
           
Sbjct: 86 G 86


>gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 431

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
            L P     ILDA    GG +    +   + V+ALD D   +   ++ +        L  
Sbjct: 242 FLEPKDDDTILDACAAPGGKTCHILELADAEVLALDSDATRLERVKQNLTRIGLGADLQC 301

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              SQ   +  +K  D ++ D+  S+  +        +
Sbjct: 302 GDASQPHTWWDEKQFDRILLDVPCSATGVIRRHPDIKW 339


>gi|146319324|ref|YP_001199036.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33]
 gi|146321528|ref|YP_001201239.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33]
 gi|223934023|ref|ZP_03625977.1| putative rRNA methylase [Streptococcus suis 89/1591]
 gi|253752355|ref|YP_003025496.1| rRNA methylase [Streptococcus suis SC84]
 gi|253754181|ref|YP_003027322.1| rRNA methylase [Streptococcus suis P1/7]
 gi|253756115|ref|YP_003029255.1| rRNA methylase [Streptococcus suis BM407]
 gi|302024304|ref|ZP_07249515.1| rRNA methylase [Streptococcus suis 05HAS68]
 gi|330833292|ref|YP_004402117.1| SAM-dependent methyltransferase [Streptococcus suis ST3]
 gi|145690130|gb|ABP90636.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33]
 gi|145692334|gb|ABP92839.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33]
 gi|223897312|gb|EEF63719.1| putative rRNA methylase [Streptococcus suis 89/1591]
 gi|251816644|emb|CAZ52285.1| putative rRNA methylase [Streptococcus suis SC84]
 gi|251818579|emb|CAZ56413.1| putative rRNA methylase [Streptococcus suis BM407]
 gi|251820427|emb|CAR47091.1| putative rRNA methylase [Streptococcus suis P1/7]
 gi|292558957|gb|ADE31958.1| Putative rRNA methylase [Streptococcus suis GZ1]
 gi|319758759|gb|ADV70701.1| SAM-dependent methyltransferase [Streptococcus suis JS14]
 gi|329307515|gb|AEB81931.1| SAM-dependent methyltransferase [Streptococcus suis ST3]
          Length = 184

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 41  LDATFGAGGYSRSFC-KMGSNVIALDRDPFAV-SCGQETMRDYKEQFSLFQATFSQLQDY 98
           +DAT G  G+   F  +    V+A D    A+ +  ++  +       L       L  Y
Sbjct: 23  VDATMGN-GHDTLFLAQRAGKVVAFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQY 81

Query: 99  VPDKGVDGVVFDLGV 113
           V +      +F+LG 
Sbjct: 82  VDE--CKAAIFNLGY 94


>gi|319951686|ref|YP_004162953.1| fmu (sun) domain protein [Cellulophaga algicola DSM 14237]
 gi|319420346|gb|ADV47455.1| Fmu (Sun) domain protein [Cellulophaga algicola DSM 14237]
          Length = 408

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG+ ++D   GAGG   +  +  +    +IA+D
Sbjct: 216 VAEFLDVKPGQRVIDTCAGAGGKTLHIAALMENKGQLIAMD 256


>gi|289165160|ref|YP_003455298.1| methyltransferase [Legionella longbeachae NSW150]
 gi|288858333|emb|CBJ12201.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 261

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 3/138 (2%)

Query: 37  GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFS 93
            + ILD   G G  + +   +     VI LD+D   +   Q   +       S      +
Sbjct: 38  DESILDVGCGDGKITAAIANLVPNGKVIGLDKDITTIKFAQAKFQPTNHNNLSFLHGDVT 97

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
           Q+ +      +        V        +   + +++G + + +     +  D +N+ + 
Sbjct: 98  QISELGKFDLIVSFSCLHFVKDQYTALINIRNNLKENGHIILMLYRKCKAQWDALNKTSA 157

Query: 154 KDLTRILGILGEEKQASR 171
                      +      
Sbjct: 158 NKKWSHYFENYDLGYYEY 175


>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14]
 gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
          Length = 426

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    + V+A+D D   +    E +       
Sbjct: 235 AVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++  A     + +      D ++ D   S+  +        +
Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKW 336


>gi|148236727|ref|NP_001085693.1| trimethylguanosine synthase 1 [Xenopus laevis]
 gi|49119211|gb|AAH73206.1| MGC80481 protein [Xenopus laevis]
          Length = 837

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
            +++DA  G GG +  F K G+ VIA+D DP  +   +     Y 
Sbjct: 681 GLVVDAFCGVGGNAIQFAKAGNRVIAVDIDPAKLDFARNNAEVYG 725


>gi|311106099|ref|YP_003978952.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
 gi|310760788|gb|ADP16237.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
          Length = 668

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 39/173 (22%), Gaps = 5/173 (2%)

Query: 50  YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA-TFSQLQDYVPDKGVDGVV 108
           + +   K    V A DRD  A +         +   +  Q  T   +     +       
Sbjct: 6   HIQHILKRDGRVAAFDRDKIAQAMAAAGQSTGELDLAGAQTLTDGVIAALAGNPCPGVET 65

Query: 109 FDLGV--SSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEE 166
               V  + +Q        ++        R+     +  DV +        R   +    
Sbjct: 66  IQNRVEEALVQAGHWRTARAYIVHREQHARLRSLRHTLVDVESAMEEYLDQRDWRVNANA 125

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH-PATRSFQALR 218
            Q   +   I+              +    +     +   IH           
Sbjct: 126 NQGYSLGGLILN-VAGKVTANYWLSNVFAPEAGRAHREGDIHIHDLDMLSGYC 177


>gi|294793728|ref|ZP_06758865.1| putative rRNA methylase [Veillonella sp. 3_1_44]
 gi|294455298|gb|EFG23670.1| putative rRNA methylase [Veillonella sp. 3_1_44]
          Length = 191

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 39  VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           V++DAT G  G+   +     +   ++  +D    A+   +E ++       +       
Sbjct: 24  VVVDATCGN-GHDLLYLSKRAQKACHLYGIDIQMKAIKTSKELLQSNDIAPEVSLTFIHD 82

Query: 95  LQDYVPDKGVDGVVFDL 111
             D      +   V DL
Sbjct: 83  SHDLAVAHQLKDEVIDL 99


>gi|282850215|ref|ZP_06259594.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|294791867|ref|ZP_06757015.1| SAM-dependent methyltransferase, MraW methylase family [Veillonella
           sp. 6_1_27]
 gi|282579708|gb|EFB85112.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|294457097|gb|EFG25459.1| SAM-dependent methyltransferase, MraW methylase family [Veillonella
           sp. 6_1_27]
          Length = 191

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 39  VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           V++DAT G  G+   +     +   ++  +D    A+   +E ++       +       
Sbjct: 24  VVVDATCGN-GHDLLYLSKRAQKACHLYGIDIQMKAIKTSKELLQSNDIAPEVSLTFIHD 82

Query: 95  LQDYVPDKGVDGVVFDL 111
             D      +   V DL
Sbjct: 83  SHDLAVAHQLKDEVIDL 99


>gi|330443800|ref|YP_004376786.1| rRNA methylase [Chlamydophila pecorum E58]
 gi|328806910|gb|AEB41083.1| rRNA methylase [Chlamydophila pecorum E58]
          Length = 193

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 34 PAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRD 80
            PG  ++DAT G G  S       +    ++  D    A+   Q+    
Sbjct: 24 VVPGDTVVDATCGRGLDSLVLARLLQGEGKLVVYDIQQEALESAQKLFMH 73


>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
 gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
          Length = 476

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           V+ LL+P PG +++D     GG S       K    VIA+D
Sbjct: 275 VVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315


>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
 gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
          Length = 476

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           V+ LL+P PG +++D     GG S       K    VIA+D
Sbjct: 275 VVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315


>gi|255039364|ref|YP_003089985.1| Methyltransferase type 11 [Dyadobacter fermentans DSM 18053]
 gi|254952120|gb|ACT96820.1| Methyltransferase type 11 [Dyadobacter fermentans DSM 18053]
          Length = 243

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 4  KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIA 63
          K  +TM       +  HV    ++VI          I+D   G G Y+ SF   G  V  
Sbjct: 22 KIKQTMIPVSSPYVRRHV----KEVIDFAGIKKSDRIIDVACGMGKYTLSFLAQGYKVEG 77

Query: 64 LD 65
          LD
Sbjct: 78 LD 79


>gi|254172289|ref|ZP_04878965.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
 gi|214034185|gb|EEB75011.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
          Length = 443

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +L+P PG+ ++D     GG   +          + A D D   +   ++ +R    + + 
Sbjct: 245 ILSPEPGETVVDLAAAPGGKTAHMAELMGNEGKIYAFDIDSERIKRMRQILRWAGVEIAE 304

Query: 88  FQA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +     +  + + ++  D V+ D   +S      +    ++
Sbjct: 305 VRKLDGRKAPEVLGEEIADRVLLDAPCTSDGTIAKNPELRWR 346


>gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489]
          Length = 403

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
             L+  PG+ ++D   GAGG   +  +  +    +IALD
Sbjct: 218 HFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQLIALD 256


>gi|145590568|ref|YP_001152570.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282336|gb|ABP49918.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
          Length = 165

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%)

Query: 24 LLEKV---IALLNPAPGKVILDATFGAG-GYS-RSFCKMGSNVIALDRDP 68
          +L++V   +  L+   G+ ++D   GAG GYS R     G  V A+D DP
Sbjct: 1  MLDEVFADLDSLDL--GQSVVD--IGAGFGYSTRYLLSRGLRVCAVDVDP 46


>gi|89075352|ref|ZP_01161774.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
 gi|89048901|gb|EAR54470.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
          Length = 294

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 23/144 (15%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAEKVIGIDIDPQAILASRDNAE--- 203

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
                       L+ Y+P     G+  D+ V+++      R  S      +         
Sbjct: 204 -----RNGVSDNLELYLPQDQPQGIQADIVVANILAG-PLRELSPVIKSLVKDGGD---- 253

Query: 143 SASDVVNQANVKDLTRILGILGEE 166
                ++         +     +E
Sbjct: 254 ---LAISGVLESQAADVSTYYSDE 274


>gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
 gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
          Length = 472

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
           +L+P PG  ++D     GG   +     K    + A D D   +   +  +R        
Sbjct: 273 ILDPKPGMTVVDLAAAPGGKTSHIAELMKNHGRIYAFDIDRVRIKRMRMILRRMGITIVR 332

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +F+    +    + ++  D V+ D   +S      +    ++
Sbjct: 333 IFEKDAREAPRILGEEIADRVLLDAPCTSTGTIAKNPELRWR 374


>gi|290968314|ref|ZP_06559856.1| rRNA methylase family protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781673|gb|EFD94259.1| rRNA methylase family protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 190

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 39  VILDATFGAGGYSRSFC-KMGS---NVIALDRDPFAVSCGQETMRD---YKEQFSLFQAT 91
           +++D T G  G+   F  +  +    + A D    AV   ++ ++    + EQ  L Q +
Sbjct: 25  IVVDMTCGN-GHDTLFLRERLAPRATLYAFDIQEPAVQATKKRLQQAGKWDEQVILRQGS 83

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             +L  ++ D  +D  VF+LG 
Sbjct: 84  HEKLI-HMIDAEIDICVFNLGY 104


>gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
 gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
          Length = 282

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           D T      G GG +R+    G+  VIA++RD  A+   +E  R Y  +  +   
Sbjct: 48  DVTVIEIGPGPGGLTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHG 102


>gi|169840261|ref|ZP_02873449.1| hypothetical protein cdivTM_24525 [candidate division TM7
           single-cell isolate TM7a]
          Length = 28

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 289 TKKVV-VPTQEDVAFNRRSRSAKLRAGMR 316
            KK +   T +  A+N RSRSAKLR  ++
Sbjct: 1   NKKPLDGATYD--AYNPRSRSAKLRGALK 27


>gi|17562972|ref|NP_504045.1| hypothetical protein R08E5.3 [Caenorhabditis elegans]
 gi|1938442|gb|AAB52277.1| Hypothetical protein R08E5.3 [Caenorhabditis elegans]
          Length = 365

 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 8   TMSSAIHHTIGDHVPV--LL----EKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGS- 59
           TMS A+H     HV V  +L      V+  L    G V +LD   G G +S    +    
Sbjct: 146 TMSQALHE---KHV-VADMLPDIGNGVVEKLE--AGGVRVLDVGCGGGFHSSLLAEQYPK 199

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQF---SLFQATFSQLQDYVPDKGVDGVVFD 110
            + + LD    A+   ++        F      +    ++ +   D     ++FD
Sbjct: 200 SHFVGLDIGEDAIRQAKQRKTKSGAAFNNLEFIECDAGKMPEIWTDSFDLVLIFD 254


>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
 gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
          Length = 451

 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           LNP PG++++D     GG   +     K    + A D D   +   +E ++    +    
Sbjct: 257 LNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFDIDKMRMKRLKEFVQRMGIKIVKP 316

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  + + ++  D V+ D   +S      +    ++
Sbjct: 317 IIKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWR 357


>gi|206561759|ref|YP_002232524.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|226710058|sp|B4E5V2|PRMA_BURCJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|198037801|emb|CAR53745.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 300

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 28  VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82
            +  L  +  PG+ +LD  +G G    +          VI +D DP AV   ++     +
Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212

Query: 83  EQFSL 87
            + + 
Sbjct: 213 AEVTY 217


>gi|170731925|ref|YP_001763872.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           MC0-3]
 gi|226710057|sp|B1JVC0|PRMA_BURCC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169815167|gb|ACA89750.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 28  VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82
            +  L  +  PG+ +LD  +G G    +          VI +D DP AV   ++     +
Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212

Query: 83  EQFSL 87
            + + 
Sbjct: 213 AEVTY 217


>gi|254246385|ref|ZP_04939706.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184]
 gi|124871161|gb|EAY62877.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184]
          Length = 300

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 28  VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82
            +  L  +  PG+ +LD  +G G    +          VI +D DP AV   ++     +
Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212

Query: 83  EQFSL 87
            + + 
Sbjct: 213 AEVTY 217


>gi|107021680|ref|YP_620007.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116688626|ref|YP_834249.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|123072432|sp|Q1BZC1|PRMA_BURCA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223397|sp|A0K4C9|PRMA_BURCH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|105891869|gb|ABF75034.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116646715|gb|ABK07356.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 300

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 28  VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82
            +  L  +  PG+ +LD  +G G    +          VI +D DP AV   ++     +
Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212

Query: 83  EQFSL 87
            + + 
Sbjct: 213 AEVTY 217


>gi|253576645|ref|ZP_04853973.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844059|gb|EES72079.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 198

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ-------FSLFQA 90
           +DAT G G  +    K       V A D  P A++  +  +                  A
Sbjct: 25  VDATAGTGADTLFLAKACGPKGRVFAFDIQPQALALTKARLDKEPADSIAGVTLLQASHA 84

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
             + +        +  V+F+LG 
Sbjct: 85  DMAAVLPADVHGRLGAVMFNLGY 107


>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
 gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
          Length = 422

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81
           ++   LL P   + ILD    A  GG +    ++    +V+A+D D   ++  +E +   
Sbjct: 236 QRCAELLAPQNNEQILD--LCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRL 293

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           K   ++        + +  +   D ++ D   S+  +        +
Sbjct: 294 KLHATVKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
 gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           HI4320]
          Length = 422

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81
           ++   LL P   + ILD    A  GG +    ++    +V+A+D D   ++  +E +   
Sbjct: 236 QRCAELLAPQNNEQILD--LCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRL 293

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           K   ++        + +  +   D ++ D   S+  +        +
Sbjct: 294 KLHATVKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|320094507|ref|ZP_08026280.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978570|gb|EFW10140.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 271

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           G GG + +   +G  V+A+DRD  A +     +R + 
Sbjct: 108 GVGGDALAIAGLGLRVLAVDRDQDASAAAAINLRHFD 144


>gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum]
          Length = 425

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 28  VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
              +L P P   ILD         T     +  +  K    ++A+D+ P  V+  ++   
Sbjct: 221 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 275

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  +  + Q   ++L D    +  D ++ D   S
Sbjct: 276 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 310


>gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum]
          Length = 516

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 28  VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
              +L P P   ILD         T     +  +  K    ++A+D+ P  V+  ++   
Sbjct: 312 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 366

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  +  + Q   ++L D    +  D ++ D   S
Sbjct: 367 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 401


>gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 359

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           V  LLNP P   ILD   G G YS    +   +V+A D     V   ++  + Y +    
Sbjct: 167 VTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQKRYADHIEF 226

Query: 88  F 88
            
Sbjct: 227 C 227


>gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 431

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
            L+P  G  ILDA    GG +    +   ++V+ALD D   +   ++ +        L  
Sbjct: 242 YLDPQNGDSILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERIGLGADLQC 301

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              SQ   +  ++  D ++ D+  S+  +        +
Sbjct: 302 GDASQPHTWWDEEQFDRILLDVPCSATGVIRRHPDIKW 339


>gi|162457317|ref|YP_001619684.1| methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161167899|emb|CAN99204.1| Methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 792

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             L    G VILD   GAGG++      G +V+  D     ++   +  +D  ++ +  Q
Sbjct: 579 ERLGVEKGAVILDLACGAGGHAIEIASRGYSVVGYDLSLAMLARAADEAQDRGQKLNFLQ 638

Query: 90  ATFSQL 95
               ++
Sbjct: 639 GDMREM 644


>gi|86159623|ref|YP_466408.1| type 12 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776134|gb|ABC82971.1| Methyltransferase type 12 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 198

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
          L  ++  L   P    LD   G G ++      G  V  +D  P A++  ++   D    
Sbjct: 25 LSALVEGLRARPPGRALDLGCGRGAHAVYLASHGWKVTGVDLVPAALAKARQRATDAGVD 84

Query: 85 FSLFQATFSQLQDY 98
                  ++L   
Sbjct: 85 VQFLDGDVTRLDTL 98


>gi|302539087|ref|ZP_07291429.1| methyltransferase [Streptomyces sp. C]
 gi|302447982|gb|EFL19798.1| methyltransferase [Streptomyces sp. C]
          Length = 253

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ----- 89
            PG  +LDA  G G ++      G  V+ +DRD   +   +E            Q     
Sbjct: 45  QPGSRLLDAPCGHGRHANVLASRGYRVVGVDRDERFLEMAREESVKMGVAVDYRQVDLRE 104

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVN 149
             F +  D           FD       +    R         LDM      I +    +
Sbjct: 105 MAFEEEFDAAVSWYSSFGYFDDETDRDILRRYRRALRPGGRFLLDMHSPYRHIPSVLANH 164

Query: 150 QANVKDLTR 158
             +V  L R
Sbjct: 165 DMHVDVLRR 173


>gi|288549259|gb|ADC52819.1| putative L-glutaminyl-2-N-methyltransferase [Streptomyces
           platensis]
          Length = 253

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           PG  +LDA  G G ++      G  V+ +DRD   ++  +        Q         ++
Sbjct: 46  PGMDLLDAPCGHGRHANVLASRGYRVVGIDRDERFLAMARNEAEKTGAQVDYRHVDLREM 105

Query: 96  -----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ 150
                 D           FD       +    R         LDM      I +    + 
Sbjct: 106 SFAAEFDAAVSWYSSFGYFDDDTDRDILRRYRRALRPGGRFLLDMHSPYRHIPSVLANHD 165

Query: 151 ANVKDLTR 158
            +V  L R
Sbjct: 166 MHVDILRR 173


>gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae]
          Length = 426

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81
           ++ + LL P  G+ ILD    A  GG +    ++     V+A+D D   +   QE +   
Sbjct: 236 QRCVELLAPKNGEYILD--LCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNRV 293

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           K    +      +  +++     D ++ D   S+  +        + + 
Sbjct: 294 KLHARVIVGDGRKPLEWISGAKFDRILLDAPCSATGVIRRHPDIKWLRK 342


>gi|114320671|ref|YP_742354.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227065|gb|ABI56864.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 194

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 41  LDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK-----EQFSLFQAT 91
           +DAT G  G+   F         +V A D  P A++  ++ +R           +    T
Sbjct: 25  VDATAGN-GHDTVFLADQVGASGHVWAFDIQPTALAATRQRLRARGLASRATLVAAGHET 83

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
            ++        G+  V+F+LG 
Sbjct: 84  LAEHLPPQVQGGLAAVMFNLGY 105


>gi|300775571|ref|ZP_07085432.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910]
 gi|300505598|gb|EFK36735.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910]
          Length = 401

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            L+   G+ ++DA  GAGG   +  +  K    +IALD   + ++  +   +        
Sbjct: 219 FLDVKEGQRVVDACAGAGGKTLHLAALMKNKGQIIALDIFDWKLAELKRRAKRAGAHNIE 278

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144
            +            +  D ++ D   S + +   +    ++       R+       
Sbjct: 279 TRMISDNKVIKRLHEKADRLLIDAPCSGLGVLKRNPDSKWKIDQDFIDRIKKEQQQI 335


>gi|254247810|ref|ZP_04941131.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124872586|gb|EAY64302.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 200

 Score = 37.4 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          G  +LD   G G ++  F   G  V+ALDRDP A++  +  
Sbjct: 32 GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAALRAI 72


>gi|107028724|ref|YP_625819.1| methyltransferase type 12 [Burkholderia cenocepacia AU 1054]
 gi|116690117|ref|YP_835740.1| methyltransferase type 12 [Burkholderia cenocepacia HI2424]
 gi|105897888|gb|ABF80846.1| Methyltransferase type 12 [Burkholderia cenocepacia AU 1054]
 gi|116648206|gb|ABK08847.1| Methyltransferase type 12 [Burkholderia cenocepacia HI2424]
          Length = 200

 Score = 37.4 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          G  +LD   G G ++  F   G  V+ALDRDP A++  +  
Sbjct: 32 GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAALRAI 72


>gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 426

 Score = 37.4 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +    + ++A+D D   +    + ++  + + 
Sbjct: 235 SINYLTPKDGELILDCCAAPGGKTAHILERTQDAQIVAIDCDDSRLKRVHDNLQRLQLKA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +      + +D+   +  D ++ D   S+  +        +
Sbjct: 295 QVICGDARKPKDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|90019826|ref|YP_525653.1| hypothetical protein Sde_0177 [Saccharophagus degradans 2-40]
 gi|89949426|gb|ABD79441.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 260

 Score = 37.4 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 16/72 (22%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVI--------ALDRDP 68
            PV   +V+A     PG  ++D   G GGY             +V            +D 
Sbjct: 55  KPV---EVLAFSGVKPGDKVIDL-LGGGGYYTELLSHVVGADGHVYLVNSPLFVNFTKDQ 110

Query: 69  FAVSCGQETMRD 80
            A       +++
Sbjct: 111 IAERLANNRLKN 122


>gi|78065162|ref|YP_367931.1| ribosomal protein L11 methyltransferase [Burkholderia sp. 383]
 gi|123569367|sp|Q39JS9|PRMA_BURS3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|77965907|gb|ABB07287.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia sp. 383]
          Length = 300

 Score = 37.4 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 28  VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82
            +  L  +  PG+ +LD  +G G    +          VI +D DP AV   ++      
Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNH 212

Query: 83  EQFSL 87
              + 
Sbjct: 213 ADVTY 217


>gi|327404248|ref|YP_004345086.1| type 11 methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327319756|gb|AEA44248.1| Methyltransferase type 11 [Fluviicola taffensis DSM 16823]
          Length = 255

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ------------- 75
           +A L PA     LD   GAG +SR+    G +V   D  P ++   +             
Sbjct: 48  VAYLKPAQNSTALDLACGAGRHSRALASHGLHVSGCDLSPNSIEEAKRVSDSSLTFFVHD 107

Query: 76  --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
             E + +  +       +F   +D   +  V   ++D
Sbjct: 108 MREKLDNQYQYVFNLFTSFGYFEDISQNALVLKSIYD 144


>gi|330830946|ref|YP_004393898.1| ribosomal protein L11 methyltransferase [Aeromonas veronii B565]
 gi|328806082|gb|AEB51281.1| Ribosomal protein L11 methyltransferase [Aeromonas veronii B565]
          Length = 292

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFC-----KMGS-NVIALDRDPFAVSCGQETMRDYK 82
           +  L+ A GK ++D  FG G            K+G+  VI +D DP A+   ++      
Sbjct: 150 LDGLDLA-GKTVVD--FGCG---SGILGIAALKLGAARVIGIDIDPQAIQASRDNAARNG 203


>gi|312143433|ref|YP_003994879.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
 gi|311904084|gb|ADQ14525.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
          Length = 255

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 24 LLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
          LL++  + L     +  +LD   G G Y+ +    G  VI +D D   ++  +    
Sbjct: 24 LLDQTFSYLKNDKKQTKLLDVGCGTGSYAVALAGKGYQVIGIDLDSEMIALAKNKQA 80


>gi|269103647|ref|ZP_06156344.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163545|gb|EEZ42041.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 294

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNG 206


>gi|198282338|ref|YP_002218659.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246859|gb|ACH82452.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 202

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
           VI  L   PG  +LD   G G ++ +  +      ++  D D   ++         +   
Sbjct: 31  VIRALGVKPGITVLDLCCGDGYFTAALARQVEDGRILGFDLDEQMLAAAASVCAGLENC- 89

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFD 110
           +  Q     L   +P+     ++ +
Sbjct: 90  TFLQGDAMALHRLLPEPVDYCLMAN 114


>gi|169841872|ref|ZP_02874981.1| Methyltransferase [candidate division TM7 single-cell isolate TM7a]
          Length = 78

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162
           VD ++ D+GVSS Q+D   RGFS++    LDMRM  S  ISA +VVN  + K++  I+  
Sbjct: 9   VDRILMDIGVSSNQLDNAKRGFSYRFEARLDMRMDSSLKISAYEVVNDFSEKEIADIIYK 68

Query: 163 LGEEKQASRI 172
            GEE ++ +I
Sbjct: 69  YGEEPKSRKI 78


>gi|115352184|ref|YP_774023.1| type 12 methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282172|gb|ABI87689.1| Methyltransferase type 12 [Burkholderia ambifaria AMMD]
          Length = 200

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          G  +LD   G G ++R F   G  V+ALDRDP +++  +  
Sbjct: 32 GGAVLDVAAGGGRHARWFASHGHPVVALDRDPASLAALRAI 72


>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
 gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
          Length = 426

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P   ++ILD     GG +    +    + V+A+D D   +    E +       
Sbjct: 235 AVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++  A     + +      D ++ D   S+  +        +
Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKW 336


>gi|328953125|ref|YP_004370459.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453449|gb|AEB09278.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 298

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 12/60 (20%)

Query: 25  LEKVIALLNPAPGKVILD-ATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSCGQETM 78
           LE+V    +  P + +LD  T G G            ++G+ V+A+D DP A++  +E +
Sbjct: 152 LEEVTYNWSQHPPRWVLDVGT-GTG-----ILGLAAARLGARVLAIDVDPEALAAARENI 205


>gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
 gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
          Length = 311

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           V  LLNP P   ILD   G G YS    +   +V+A D     V   ++  + Y +    
Sbjct: 119 VTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQKRYADHIEF 178

Query: 88  F 88
            
Sbjct: 179 C 179


>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
 gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
          Length = 429

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            +A L P  G+ ILD    A  GG +    +      V+A+D D   +S   + ++    
Sbjct: 238 CVAFLAPQNGEQILD--LCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKRLGM 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             ++ Q        +  ++  D ++ D   S+  +        +
Sbjct: 296 NATVKQGDGRYPLQWCGEQQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|330444964|ref|ZP_08308618.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328493082|dbj|GAA03115.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 294

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK I+D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGKTIID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNG 206


>gi|289167359|ref|YP_003445628.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6]
 gi|288906926|emb|CBJ21760.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6]
          Length = 440

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 23  VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  L+      ++DA     T G      +F K    +  +D  P A+   +  
Sbjct: 276 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 330

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +     F          ++ +P    +G   D
Sbjct: 331 AKRMG--FDNTHYEVGTAEEIIPRWYKEGYRAD 361


>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 426

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    + V+A+D D   +    E +       
Sbjct: 235 AVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++  A     + +      D ++ D   S+  +        +
Sbjct: 295 TVLCADARYPEQWWKGDKFDRILLDAPCSATGVIRRHPDIKW 336


>gi|312144062|ref|YP_003995508.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus']
 gi|311904713|gb|ADQ15154.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus']
          Length = 389

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL ++    +     K I D   G+G  S+S       +  +D D  A++  +E 
Sbjct: 232 VLYKEAKKYIKNPDAKTIYDLYCGSGTISQSIADNAKKIYGIDIDEEAINRAREN 286


>gi|257469878|ref|ZP_05633970.1| Transcriptional regulator (ArsR family) protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|317064107|ref|ZP_07928592.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689783|gb|EFS26618.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 251

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
          ++I LL     +VI D   G GG++    +    VIA+DR
Sbjct: 18 EIIELLPIEDNQVIADLGCGTGGFTEIISEKVRQVIAVDR 57


>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 429

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            +A L P  G+ ILD    A  GG +    +     +V+A+D D   +S   + ++    
Sbjct: 238 CVAFLAPQNGEHILD--LCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKRLGM 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           + ++ Q        +  ++  D ++ D   S+  +        +
Sbjct: 296 KATVKQGDGRYPAQWCDEQQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|163848211|ref|YP_001636255.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222526119|ref|YP_002570590.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163669500|gb|ABY35866.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl]
 gi|222449998|gb|ACM54264.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl]
          Length = 271

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 27/85 (31%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I  L     + +LD   G G +S +    G  V+ LD     ++  Q    D        
Sbjct: 38  IDALGLRGVETVLDVACGGGRHSLALAARGWTVVGLDAAASVIAHAQAAATDQGLNVEFV 97

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                QL  +     V  +   LG 
Sbjct: 98  TGDMRQLPYHERFDVVLLMNSSLGF 122


>gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 308

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +    + V+A+D D   ++   + ++    Q 
Sbjct: 118 AIEYLQPQAGELILDCCAAPGGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQA 177

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +  A     + +      D ++ D   S+  +        +
Sbjct: 178 KVLCADARYPEKWWDGDKFDRILLDAPCSATGVIRRHPDIKW 219


>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
 gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
          Length = 429

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G++ILD     GG +    +     +V+A+D D   +    E ++  K   
Sbjct: 238 SVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQRLKLSA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            + Q    + Q +  D+  D ++ D   S+  +        +
Sbjct: 298 EVKQGDGREPQMWAGDRIFDRILLDAPCSATGVIRRHPDIKW 339


>gi|117620314|ref|YP_857842.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166223392|sp|A0KNJ1|PRMA_AERHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|117561721|gb|ABK38669.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 292

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFC-----KMGS-NVIALDRDPFAVSCGQETMRDYK 82
           +  L+ A GK ++D  FG G            K+G+  VI +D DP A+   ++      
Sbjct: 150 LDGLDLA-GKTVVD--FGCG---SGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNG 203


>gi|281411985|ref|YP_003346064.1| glycosyl transferase family 2 [Thermotoga naphthophila RKU-10]
 gi|281373088|gb|ADA66650.1| glycosyl transferase family 2 [Thermotoga naphthophila RKU-10]
          Length = 1044

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 1/137 (0%)

Query: 43  ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102
            T G G +S       ++V  +D DP ++       +DY  +   F+             
Sbjct: 522 GT-GTGAFSIELALREADVTGIDIDPTSIELAIRISKDYNVENVEFKVGDGFKLTESFKP 580

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162
               + F++GV     D        Q        +     S S V   A           
Sbjct: 581 QEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTAKETAQKLGAWE 640

Query: 163 LGEEKQASRIAHAIVKR 179
            G E+    +   I + 
Sbjct: 641 YGFERDFLTLEPLIRRA 657


>gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS
          2060]
 gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS
          2060]
          Length = 283

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFS 86
          G GG +R+    G+  VIA++RDP A+    E    Y  + +
Sbjct: 56 GPGGLTRALLAEGAARVIAIERDPRALPALAEIAAHYPGRLT 97


>gi|320105974|ref|YP_004181564.1| type 11 methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319924495|gb|ADV81570.1| Methyltransferase type 11 [Terriglobus saanensis SP1PR4]
          Length = 202

 Score = 37.0 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMR 79
          L ++++   N  PG  ILDA     GY R      + G  V ALD DP AV   ++   
Sbjct: 15 LFDQILRG-NILPGMRILDA---GCGYGRNLVHLLREGCEVFALDADPAAVEHVRQLSA 69


>gi|302756219|ref|XP_002961533.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii]
 gi|300170192|gb|EFJ36793.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii]
          Length = 205

 Score = 37.0 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           V++DA  G GG +  F     +VIA+D+DP  ++  +     Y    +       F QL
Sbjct: 45  VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQL 103


>gi|302775726|ref|XP_002971280.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii]
 gi|300161262|gb|EFJ27878.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii]
          Length = 205

 Score = 37.0 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           V++DA  G GG +  F     +VIA+D+DP  ++  +     Y    +       F QL
Sbjct: 47  VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQL 105


>gi|15643519|ref|NP_228565.1| galactosyltransferase-related protein [Thermotoga maritima MSB8]
 gi|4981283|gb|AAD35838.1|AE001745_5 galactosyltransferase-related protein [Thermotoga maritima MSB8]
          Length = 1044

 Score = 37.0 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 1/137 (0%)

Query: 43  ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102
            T G G +S       ++V  +D DP ++       +DY  +   F+             
Sbjct: 522 GT-GTGAFSIELALREADVTGIDIDPTSIELAIRISKDYNVENVEFKVGDGFKLTESFKP 580

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162
               + F++GV     D        Q        +     S S V   A           
Sbjct: 581 QEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTAKETAQKLGAWE 640

Query: 163 LGEEKQASRIAHAIVKR 179
            G E+    +   I + 
Sbjct: 641 YGFERDFLTLEPLIRRA 657


>gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT]
 gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 328

 Score = 37.0 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
              PG +++D   G G +S    K G+ VIA+D++P A    +E  R  +    + +   
Sbjct: 163 QVRPGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLDVEIREGDA 222

Query: 93  SQLQD 97
           S L +
Sbjct: 223 SSLTE 227


>gi|148269317|ref|YP_001243777.1| glycosyl transferase family protein [Thermotoga petrophila RKU-1]
 gi|147734861|gb|ABQ46201.1| glycosyl transferase, family 2 [Thermotoga petrophila RKU-1]
          Length = 991

 Score = 37.0 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 1/137 (0%)

Query: 43  ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102
            T G G +S       ++V  +D DP ++       +DY  +   F+             
Sbjct: 522 GT-GTGAFSIELALREADVTGIDIDPTSIELAIRISKDYNVENVEFKVGDGFKLTESFKP 580

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162
               + F++GV     D        Q        +     S S V   A           
Sbjct: 581 QEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTAKETAQKLGAWE 640

Query: 163 LGEEKQASRIAHAIVKR 179
            G E+    +   I + 
Sbjct: 641 YGFERDFLTLEPLIRRA 657


>gi|307710372|ref|ZP_07646812.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564]
 gi|307618849|gb|EFN97985.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564]
          Length = 367

 Score = 37.0 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 23  VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  L+      ++DA     T G      +F K    +  +D  P A+   +  
Sbjct: 207 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 261

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +     F          ++ +P    +G   D
Sbjct: 262 AKRMG--FDNTHYEAGTAEEIIPRWYKEGYRAD 292


>gi|195392497|ref|XP_002054894.1| GJ22549 [Drosophila virilis]
 gi|194152980|gb|EDW68414.1| GJ22549 [Drosophila virilis]
          Length = 466

 Score = 37.0 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           G VI+DA  G GG +  F    S VIA+D D   ++  ++    Y    +     A F Q
Sbjct: 297 GDVIVDAFCGCGGNAIQFANTCSRVIAIDIDANKLAMAKQNALIYGVAHKIEFVHADFLQ 356

Query: 95  L 95
            
Sbjct: 357 F 357


>gi|126180109|ref|YP_001048074.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125862903|gb|ABN58092.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 210

 Score = 37.0 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAG-GY-SRSFCKM-GSNVIALDRDPFAVSCGQET 77
           PV+ E+ +A        + LD   G+G G+ S +  +    ++IALD DP      + T
Sbjct: 20 YPVIAEQALAWSGIR-DGIALD--LGSGPGHLSVALAEKSNLSIIALDADPATSRIARTT 76

Query: 78 MRDYKEQFSLFQATFSQLQ 96
               ++          + 
Sbjct: 77 AAGCGDRVIPVTGDVHCMP 95


>gi|326201088|ref|ZP_08190960.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
 gi|325988656|gb|EGD49480.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
          Length = 241

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 26  EKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           ++ +  L      P K +LD   G GGYS    + G NV A+D D   V   +   ++  
Sbjct: 19  KEQLDFLKEIAGKPPKSVLDIACGTGGYSLELDRRGYNVTAVDLDKEMVRRLEVKAKENN 78

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVF 109
           +     Q    +LQ+ + D        
Sbjct: 79  QSVKFMQGNMLELQNKISDSFDLVFCI 105


>gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
 gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
          Length = 287

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           D T      G GG +R+    G+  VIA++RD  A+   +E    Y  +  +  A   + 
Sbjct: 48  DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|296164985|ref|ZP_06847540.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899633|gb|EFG79084.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 252

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
            L   P   ++D   GAG ++    + G++V+A DRD   +      +R   +
Sbjct: 7  DRLGIGPATKVIDVGCGAGRHAFEAYRRGADVVAFDRDADELRAVDTILRAMAD 60


>gi|145223449|ref|YP_001134127.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145215935|gb|ABP45339.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 207

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 46  GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103
           G G  ++   +      V A+D DP  +    E +  Y  +  L Q + + L   +    
Sbjct: 47  GYG--TQLILERFGAATVDAVDLDPAMIRRAGERLARYGNRVRLVQGSATDLSTALDAGD 104

Query: 104 VDG-VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRIL-G 161
                VFD G+     D  +      +      R     ++A  +   +  +        
Sbjct: 105 GSYGAVFDFGIVHHIPDWRNAVAEVARVLAPGGRFYFDEVTAHALARPSYKRLFDHPTED 164

Query: 162 ILGEEKQASRIAHA 175
               E+ +  +AH 
Sbjct: 165 RFSAEQFSDELAHH 178


>gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
 gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
          Length = 451

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 23  VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  L+      ++DA     T G      +F K    +  +D  P A+   +  
Sbjct: 291 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 345

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +     F          ++ +P    +G   D
Sbjct: 346 AKRMG--FDNIHYEAGTAEEIIPRWYKEGYRAD 376


>gi|197337515|ref|YP_002158416.1| biotin biosynthesis protein BioC [Vibrio fischeri MJ11]
 gi|197314767|gb|ACH64216.1| biotin biosynthesis protein BioC [Vibrio fischeri MJ11]
          Length = 273

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 42/165 (25%), Gaps = 5/165 (3%)

Query: 52  RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            +  K G+ V+A D     +   +E   D+    +  Q     L     +         L
Sbjct: 72  EALLKRGARVVAFDLSSVMLEKAKERCGDHN--ITYIQGDAEDLPFMDDEFDGVVSSLAL 129

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASR 171
                             +    +  +    S  ++    +  DL + +         S 
Sbjct: 130 QWCQDLSVPLREMRRISHNKSKVIFSTLLDGSLFELKKAWSKVDLYQHVNDF---ITPSM 186

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216
           +  A+ +   +        +       +   K+ +   AT     
Sbjct: 187 VKIALAQSECNNFTLHCTSVEMTYSSALALMKDLKGIGATHLPNG 231


>gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
 gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
          Length = 287

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           D T      G GG +R+    G+  VIA++RD  A+   +E    Y  +  +  A     
Sbjct: 48  DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|91784217|ref|YP_559423.1| hypothetical protein Bxe_A1584 [Burkholderia xenovorans LB400]
 gi|91688171|gb|ABE31371.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 199

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
           A G  +LD   GAG ++R F  +G  V A+DRD  A++
Sbjct: 25 VAAGGAVLDVACGAGRHARFFAALGHPVTAIDRDAAALA 63


>gi|75866785|gb|AAI05288.1| METT5D1 protein [Homo sapiens]
          Length = 99

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 16 TIGD-HVPVLLEKVIALLNPAPGK 38
          T+   H+PV++++V+  L+P  G+
Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQ 90


>gi|89895091|ref|YP_518578.1| hypothetical protein DSY2345 [Desulfitobacterium hafniense Y51]
 gi|219669504|ref|YP_002459939.1| rRNA methylase [Desulfitobacterium hafniense DCB-2]
 gi|89334539|dbj|BAE84134.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539764|gb|ACL21503.1| putative rRNA methylase [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +  PG + LD T G G  +    +       V A D    A+   Q  +++ +    +  
Sbjct: 19  SIQPGDIALDLTAGRGRDTLFLAQLVGAEGRVHAFDVQEVALQETQRLLKEQQMAERVHL 78

Query: 90  ATFSQLQDYVP-DKGVDGVVFDLGV 113
             +   +        V   +F+LG 
Sbjct: 79  YHWDHGRLLEKVQDPVQAAMFNLGY 103


>gi|158315916|ref|YP_001508424.1| hypothetical protein Franean1_4131 [Frankia sp. EAN1pec]
 gi|158111321|gb|ABW13518.1| hypothetical protein Franean1_4131 [Frankia sp. EAN1pec]
          Length = 78

 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           ILDAT G G Y+    + G+ +I  D+ P  V+  ++ 
Sbjct: 35 TILDATRGPGFYAEELTRRGARIIGFDQSPVMVALTRKL 73


>gi|308471212|ref|XP_003097837.1| hypothetical protein CRE_12932 [Caenorhabditis remanei]
 gi|308239142|gb|EFO83094.1| hypothetical protein CRE_12932 [Caenorhabditis remanei]
          Length = 362

 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 9   MSSAIHHTIGDH-VPVLLEKVIALL--NPAPGKV-ILDATFGAGGYSRSFCKMGS--NVI 62
           MS A+H     H +P ++  +   +      G V +LD   G G +S    +     + +
Sbjct: 143 MSQALHE---KHVIPDMIPAIGNGIVEKLESGGVRVLDVGCGGGFHSSLLAEQYPKAHFV 199

Query: 63  ALDRDPFAVSCGQETMRDYKEQF---SLFQATFSQLQDYVPDKGVDGVVFD 110
            LD    A++  ++        F      +    ++ +   D     ++FD
Sbjct: 200 GLDIGADAINQAKKRKTKSGGIFNNLEFIECDAGKMPEIWTDSFDLVLIFD 250


>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
 gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score = 37.0 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL  + I        + ++DA  G G  S +F K    V A++  P A+   +E  R  +
Sbjct: 294 VLYHEAIQAAGLTGDETVVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQ 353


>gi|21231131|ref|NP_637048.1| biotin synthesis protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768861|ref|YP_243623.1| biotin synthesis protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112767|gb|AAM40972.1| biotin synthesis protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574193|gb|AAY49603.1| biotin synthesis protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 236

 Score = 37.0 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 20/169 (11%)

Query: 20  HVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAV 71
           H PV+L +  A+L   P     + +LDA  G+G   R   +      + V  +D  P  +
Sbjct: 29  HNPVMLAEQRAMLALLPTDLRSQHVLDAGCGSG---RYMLQALQRGAAQVTGVDLSPEML 85

Query: 72  SCGQETMR--DYKEQFSLFQATFSQLQ--DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                 +        FSL Q +  QL   D + D  V G+V              R  + 
Sbjct: 86  QRAAHELAQRWPATCFSLQQGSLEQLPVADAMADITVCGLVVGHLPRLWTALEQLRRVTR 145

Query: 128 QKSGPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIA 173
                L   +   G +     D         +     +       S  A
Sbjct: 146 IGGSVLCSDVHPIGHALGWRRDFKADGQHYAIRHTQHLYS--HWHSACA 192


>gi|323136513|ref|ZP_08071595.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylocystis sp. ATCC 49242]
 gi|322398587|gb|EFY01107.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylocystis sp. ATCC 49242]
          Length = 238

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPF--AVSCG 74
           L +++    P PG+  LD   G  GYS +        V+AL+ DP   A +  
Sbjct: 86  LARLLQGAAPRPGEKALD--IGGAGYSAAILSGLVGEVVALESDPELAARARA 136


>gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
 gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
          Length = 287

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           DAT      G GG +R+   +G+ +VIA++RD  A+   +E    Y  + ++  A  +  
Sbjct: 48  DATVVEIGPGPGGLTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|331270275|ref|YP_004396767.1| hypothetical protein CbC4_2103 [Clostridium botulinum BKT015925]
 gi|329126825|gb|AEB76770.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 192

 Score = 37.0 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--- 57
           M+      ++++++         L ++ IA+       + +DAT G G  +     +   
Sbjct: 1   MDDVEKNFLTNSMN---------LAKE-IAIKKLQHKDIAVDATMGNGNDTVFLASLVGD 50

Query: 58  GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              V + D    A+   ++ + D   K    L       +  Y+ +  V  V+F+LG 
Sbjct: 51  SGTVYSFDVQKEAIDNTRKKIIDNEIKTNIQLIHDGHENIDKYINE-DVKLVMFNLGY 107


>gi|298705468|emb|CBJ28743.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 379

 Score = 37.0 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
           ++     +G H+       + LL P  G+ ILD   G G  +      G  V+ +D
Sbjct: 62  NAGFVPELGKHL-------LDLLAPRDGERILDVGCGDGVLTAEIKARGCRVVGID 110


>gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895]
 gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 37.0 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 28  VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
            ++ L P  G+ ILD    A  GG +    +      V+A+D D   +S   + ++    
Sbjct: 237 CVSFLAPQNGEKILD--LCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKRLGM 294

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           + ++ Q        +  ++  D ++ D   S+  +        +
Sbjct: 295 KATVKQGDGRYPAQWCGEQKFDRILLDAPCSATGVIRRHPDIKW 338


>gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
 gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
          Length = 449

 Score = 37.0 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
           +L+P PG  ++D     GG   +          + A D D   ++  ++ +R        
Sbjct: 252 ILDPKPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRTGVRNAR 311

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +++    +  D + ++  D V+ D   SS      +    ++
Sbjct: 312 IYREDSRKAPDILGEEIADRVLLDAPCSSDGTIMKNPDLRWR 353


>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536]
 gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
          Length = 429

 Score = 37.0 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G+ ILD   G GG +    ++     V+A+D D   +S   + ++    + 
Sbjct: 238 CMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++ Q        +  ++  D ++ D   S+  +        +
Sbjct: 298 TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKW 339


>gi|163756471|ref|ZP_02163584.1| putative sun protein [Kordia algicida OT-1]
 gi|161323579|gb|EDP94915.1| putative sun protein [Kordia algicida OT-1]
          Length = 404

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG  ++D   GAGG   +  +  +   N+I+LD
Sbjct: 219 VSEFLDVKPGMKVVDTCAGAGGKSLHLAALMENKGNLISLD 259


>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
 gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
 gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
 gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
          Length = 426

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +  S   V+ALD D   +    E ++    Q  +
Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   + +   +  D ++ D   S+  +        +
Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6]
 gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           CMCP6]
          Length = 426

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +  S   V+ALD D   +    E ++    Q  +
Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   + +   +  D ++ D   S+  +        +
Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|319936445|ref|ZP_08010861.1| rRNA methylase [Coprobacillus sp. 29_1]
 gi|319808560|gb|EFW05112.1| rRNA methylase [Coprobacillus sp. 29_1]
          Length = 175

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 39 VILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          + +D T G  G+ +    +    V A D    A+   Q+ +   ++
Sbjct: 20 IGVDMTMGN-GHDTLFLLQHCQKVYAFDIQRQAIEKTQKLIGYNRD 64


>gi|158320607|ref|YP_001513114.1| putative rRNA methylase [Alkaliphilus oremlandii OhILAs]
 gi|158140806|gb|ABW19118.1| putative rRNA methylase [Alkaliphilus oremlandii OhILAs]
          Length = 189

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY---KEQFS 86
               G + +DAT G G  +    +       V + D    A+   +E + ++        
Sbjct: 18  KIKQGNIAIDATMGNGNDTVFLARSVGISGKVYSFDVQEIALRNTKEKITEHHLKGYDIQ 77

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L       +  Y  +  VD V+F+LG 
Sbjct: 78  LINDGHENINQY-IEGLVDVVMFNLGY 103


>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 426

 Score = 37.0 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    + V+A+D D   ++  +E +       
Sbjct: 235 SVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGRLNLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +         ++   +  D ++ D   S+  +        +
Sbjct: 295 DVICGDARSPDEWWNGEDFDRILLDAPCSATGVIRRHPDIKW 336


>gi|196012774|ref|XP_002116249.1| hypothetical protein TRIADDRAFT_60151 [Trichoplax adhaerens]
 gi|190581204|gb|EDV21282.1| hypothetical protein TRIADDRAFT_60151 [Trichoplax adhaerens]
          Length = 313

 Score = 37.0 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 12/143 (8%)

Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV-- 221
           G           I ++   +     + + S   +    ++N            L      
Sbjct: 172 GNPLPYIHTQIIIDRKSYKSEQTIARGIISSFAQLAAHAQNKDGKLGQSLKHPLCCQTII 231

Query: 222 -NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN- 279
            N +         +  K       L+ +++ S         F+S +G++      +    
Sbjct: 232 TNGQQFTFMCYQLNTLKTNNIEKGLVNMAWASD----TMDLFSSYNGEIDINEKCLKYIA 287

Query: 280 ----AHPAVFQSITKKVVVPTQE 298
                 P  F+ I KK V  ++E
Sbjct: 288 QFFVNKPIPFKVIKKKSVKASEE 310


>gi|327279228|ref|XP_003224359.1| PREDICTED: trimethylguanosine synthase-like [Anolis carolinensis]
          Length = 943

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93
              +I+DA  G GG S  F   G  VIA+D DP  +         Y   +Q       F 
Sbjct: 782 KSDIIVDAFCGVGGNSIQFALAGKRVIAIDIDPVKIRLAHNNAEVYGVADQIEFICGDFM 841

Query: 94  QL 95
           +L
Sbjct: 842 KL 843


>gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 437

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86
            LLN  P + ILD     GG +    ++   +   +A+D DP  +   +E +     Q S
Sbjct: 244 NLLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLTRLGHQAS 303

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           L     S+ + +   +  D ++ D   S+  I        + +  
Sbjct: 304 LICGDASEPKAWWDGEQFDRILLDAPCSATGIIRRHPDIKWLRKS 348


>gi|294828297|ref|NP_713534.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293386148|gb|AAN50552.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 343

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 45  FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           FG GG   ++ +  +      VIALD D  A+    +
Sbjct: 171 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATK 207


>gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
 gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
          Length = 286

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+   +G+  VIA++RD  A+   QE    Y  +  +  A
Sbjct: 57  GPGGLTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCA 102


>gi|242243021|ref|ZP_04797466.1| rRNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|242233479|gb|EES35791.1| rRNA methyltransferase [Staphylococcus epidermidis W23144]
          Length = 187

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
                +++DAT G G  +  F +   N  V   D    A+    + ++DY          
Sbjct: 18  INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKIKDYSNVKLIQSGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                         +D  +F+LG 
Sbjct: 78  ENAKLHIPAQYHGHIDAAIFNLGY 101


>gi|261403589|ref|YP_003247813.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanocaldococcus vulcanius M7]
 gi|261370582|gb|ACX73331.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanocaldococcus vulcanius M7]
          Length = 180

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          VP+  E++    I  LN     V++D   G+GG +    K    V A+D    A+   Q+
Sbjct: 13 VPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIAKRCKFVYAIDYLDDAIELTQQ 72

Query: 77 TMRDYK 82
           +  + 
Sbjct: 73 NLAKFN 78


>gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
 gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           DAT      G GG +R+   MG+  VIA++RD  A+   +E    Y  + ++  A  +Q 
Sbjct: 48  DATVIEIGPGPGGLTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|304440266|ref|ZP_07400156.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371315|gb|EFM24931.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 181

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 41  LDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDY 98
           +DAT G G  + S  K   ++V + D    A+    E ++ + +++++L   + S +  Y
Sbjct: 23  VDATLGNGNDTYSILKYTDAHVTSFDIQEMALESSLEKLKTFSRDRYNLILDSHSNMDRY 82

Query: 99  VPDKGVDGVVFDLGV 113
           + D   D +VF+ G 
Sbjct: 83  LKD-SPDLIVFNTGY 96


>gi|120435407|ref|YP_861093.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii
           KT0803]
 gi|117577557|emb|CAL66026.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii
           KT0803]
          Length = 403

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           ++V  LL+  PG  ++D   GAGG   +  +  +    +IALD
Sbjct: 214 QRVAELLDVKPGMRVVDTCAGAGGKTLHLAALMENKGQIIALD 256


>gi|302870918|ref|YP_003839554.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
          obsidiansis OB47]
 gi|302573777|gb|ADL41568.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
          obsidiansis OB47]
          Length = 264

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 51 SRSFCKMGSNVIALDRDPFAVSCG-QETMRDYKEQFSLFQATFSQLQDY 98
          + SF + G+ V A+D+D  A+    Q+    +K++ + F+   +  ++ 
Sbjct: 31 ALSFLENGAKVFAIDKDREAIEDASQDFFDKFKDRITFFECDLADAKEI 79


>gi|229845963|ref|ZP_04466075.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae
           7P49H1]
 gi|229810967|gb|EEP46684.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae
           7P49H1]
          Length = 254

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 19/169 (11%)

Query: 22  PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L +++       LL    GK +LD   G GG+ + + K G + VI  D     +   
Sbjct: 24  PISLNEIVEKPTMLSLLPDLKGKKLLDLGCGTGGHLQLYLKRGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVV---------FDLGVSSMQIDCGD 122
           ++ ++       +FSL+     +L +                    F   ++S+      
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPMEKLAELPECHFDVITSSFAFHYIEDFPALLASIANKLKP 143

Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASR 171
            G                G        +  V          GE  +   
Sbjct: 144 NGILVFSQEHPITTCHKEGDRWEKNDKKQQVAYRLNHYREEGERNRNWF 192


>gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 278

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105
           G GG +R+  K G+ V A++RD   +    E    + +Q  +      ++ +        
Sbjct: 56  GPGGLTRALLKAGAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEHV 115

Query: 106 GVVFDLGVSSMQIDCGDR 123
            +V +L  +         
Sbjct: 116 HIVANLPYNVGTALLIRW 133


>gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
           V++ + +ALL P PG+ ILD   G G ++    ++G+ V+ ++ D
Sbjct: 281 VMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGD 325


>gi|125544200|gb|EAY90339.1| hypothetical protein OsI_11916 [Oryza sativa Indica Group]
          Length = 690

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
            +++D   G GG +  F     +VIA+D DP  + C Q
Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQ 550


>gi|115453397|ref|NP_001050299.1| Os03g0396900 [Oryza sativa Japonica Group]
 gi|14029021|gb|AAK52562.1|AC079853_15 Unknown protein [Oryza sativa Japonica Group]
 gi|108708634|gb|ABF96429.1| WW domain-containing protein, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113548770|dbj|BAF12213.1| Os03g0396900 [Oryza sativa Japonica Group]
 gi|215737194|dbj|BAG96123.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625074|gb|EEE59206.1| hypothetical protein OsJ_11156 [Oryza sativa Japonica Group]
          Length = 690

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
            +++D   G GG +  F     +VIA+D DP  + C Q
Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQ 550


>gi|45656700|ref|YP_000786.1| zinc binding dehydrogenase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45599936|gb|AAS69423.1| zinc binding dehydrogenase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 348

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 45  FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           FG GG   ++ +  +      VIALD D  A+    +
Sbjct: 176 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATK 212


>gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761717|ref|ZP_04759804.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|62900473|sp|Q5NMX2|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374025|gb|EER63558.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 278

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105
           G GG +R+  K G+ V A++RD   +    E    + +Q  +      ++ +        
Sbjct: 56  GPGGLTRALLKAGAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEHV 115

Query: 106 GVVFDLGVSSMQIDCGDR 123
            +V +L  +         
Sbjct: 116 HIVANLPYNVGTALLIRW 133


>gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator]
          Length = 978

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           +I+DA  GAGG +  F    + VIA+D DP  +   +   + Y    +       F +L
Sbjct: 813 IIIDAFCGAGGNTIQFALTCNKVIAIDIDPIKIELAKHNAKIYGVDNKIEFIVGNFLEL 871


>gi|194036729|ref|XP_001927911.1| PREDICTED: trimethylguanosine synthase [Sus scrofa]
          Length = 851

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++    Q  F QL
Sbjct: 691 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFIQGDFLQL 749


>gi|86141310|ref|ZP_01059856.1| hypothetical protein MED217_04812 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831869|gb|EAQ50324.1| hypothetical protein MED217_04812 [Leeuwenhoekiella blandensis
           MED217]
          Length = 249

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 12/194 (6%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ------ETMRDYK 82
           I++LNP   + ILD   G G  + +  + G+ ++ +D     +   +      E +    
Sbjct: 22  ISMLNPQKDERILDLGCGTGELTAAIAESGAQLVGIDASQEMIDAAKAQFKNIEFITARG 81

Query: 83  EQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           E F   +   +   +        P+  +  +  +L +    +       +         R
Sbjct: 82  ESFIDQERYDAIFSNATLHWILNPEAAISAMYSNLKIGGRLLLEMGGAGNIDTIIKALSR 141

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +                           E+         + +R        T  +  L  
Sbjct: 142 VLEEKGYFKQSRTINWYFPKLGTYCYFLEKSGFQVTFAHLYERPTKLKDPETGIIDWLKM 201

Query: 197 KTVYFSKNNRIHPA 210
              ++  +   H A
Sbjct: 202 FAKHYFTDIPEHEA 215


>gi|315441657|ref|YP_004074534.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Mycobacterium sp. Spyr1]
 gi|315265312|gb|ADU02053.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Mycobacterium sp. Spyr1]
          Length = 208

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 46 GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
          G G  S+   +      + ALD DP  +   ++ +     + +L + + + L
Sbjct: 47 GYG--SQLVLQRFGADRIDALDLDPTMIDRARKRLAPCGNRVTLVRGSATDL 96


>gi|148826444|ref|YP_001291197.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE]
 gi|148716604|gb|ABQ98814.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE]
          Length = 254

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 24/219 (10%)

Query: 22  PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I       LL    GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++       +FSL+     +L +           FD+  SS           + ++ 
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAELPESH------FDVITSSFAFH-------YIENF 130

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           P  +      +S++  +  +    +T      GE  + +     +  R      +  ++ 
Sbjct: 131 PALLSTIHDKLSSNGTLIFSQEHPITTCHKE-GERWEKNDKKQQVAYRLNHYREEGKRNR 189

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +   Q    + +              +I    E     Q
Sbjct: 190 NWFKQPFQTYHRTTATIINNLIHAGFQIEQMEEPMLADQ 228


>gi|332969910|gb|EGK08912.1| rRNA methylase [Desmospora sp. 8437]
          Length = 200

 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
            PG   +DAT G G  +    +       V   D    A+   +E +R+     + +L +
Sbjct: 19  NPGSFAVDATVGNGNDTLFLARAVGVSGLVHGFDIQQEALDRTEERLREAGLAGRVTLHR 78

Query: 90  ATFSQLQDY---VPDKGVDGVVFDLGV 113
           A   Q+ +         V  V+F+LG 
Sbjct: 79  AGHEQMAETLPPDWRGKVRAVMFNLGY 105


>gi|195110597|ref|XP_001999866.1| GI24763 [Drosophila mojavensis]
 gi|193916460|gb|EDW15327.1| GI24763 [Drosophila mojavensis]
          Length = 453

 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           VI+DA  G GG +  F      VIA+D D   ++  ++    Y    +     A F Q 
Sbjct: 287 VIVDAFCGCGGNAIQFANTCGRVIAIDIDLKKLAMAKQNASIYGVAHKIDFVHADFLQF 345


>gi|213612333|ref|ZP_03370159.1| hypothetical protein SentesTyp_07409 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 24

 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 16 TIGDHVPVLLEKVIALLNPAPG 37
              H  VLL++ +  LN  P 
Sbjct: 3  ENFKHTTVLLDEAVNGLNIRPD 24


>gi|256810827|ref|YP_003128196.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanocaldococcus fervens AG86]
 gi|256794027|gb|ACV24696.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanocaldococcus fervens AG86]
          Length = 180

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          +P+  E++    I  LN     V++D   G+GG +    +    V A+D +  A++  ++
Sbjct: 13 IPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIARRCKFVYAIDYEEEAINLTKQ 72

Query: 77 TMRDYK 82
           +  + 
Sbjct: 73 NLAKFN 78


>gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 449

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQF-S 86
           +L+P PG  ++D     GG ++   ++  N   + A D D   +   Q  +R    +   
Sbjct: 252 ILDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRRTGVRIAK 311

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +++    +  + + +K  D V+ D   SS      +    ++
Sbjct: 312 IYREDSRKAPEILGEKIADRVLLDAPCSSDGTIMKNPDLRWR 353


>gi|77919975|ref|YP_357790.1| rRNA methylase domain-containing protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77546058|gb|ABA89620.1| rRNA methylase domain protein [Pelobacter carbinolicus DSM 2380]
          Length = 232

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR 79
           LLE V+      PG + +D T G  G+   F          V+A D    A+      + 
Sbjct: 42  LLEPVL-----IPGGLAVDLTAGN-GHDTLFLWSRVGAEGQVLAFDVQSQALLNTSRRLS 95

Query: 80  DYKEQFS 86
           +      
Sbjct: 96  EAGATVQ 102


>gi|304404973|ref|ZP_07386633.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9]
 gi|304345852|gb|EFM11686.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9]
          Length = 196

 Score = 36.6 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 36  PGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAVSCGQETMRDYKEQ-------- 84
           PG  ++DAT G G  +R   ++ G    V A D    A+   +E +   +++        
Sbjct: 20  PGDAVIDATAGNGVDTRFLAELVGPRGAVYAFDIQEAALLATRERLAPLEDEGRLPALQL 79

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                   +          +  V+F+LG 
Sbjct: 80  VLDSHERMAAHVQPKHAGAIAAVMFNLGY 108


>gi|169836849|ref|ZP_02870037.1| hypothetical protein cdivTM_07039 [candidate division TM7
          single-cell isolate TM7a]
          Length = 249

 Score = 36.6 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
          +++I  LNP   + ILD   G G  ++   K    V+ LD
Sbjct: 24 KELIEWLNPKKDEYILDLGCGDGVLTKEISKYRCKVLGLD 63


>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
 gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
          Length = 426

 Score = 36.6 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    + V+A+D D   +    + +   + + 
Sbjct: 235 SVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        +++      D ++ D   S+  +        +
Sbjct: 295 DVICGDARYPEEWWMGDKFDRILLDAPCSATGVIRRHPDIKW 336


>gi|312134220|ref|YP_004001558.1| short-chain dehydrogenase/reductase sdr [Caldicellulosiruptor
          owensensis OL]
 gi|311774271|gb|ADQ03758.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
          owensensis OL]
          Length = 264

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
          + SF + G+ V A+D+D  A+    +   D+ ++F      F 
Sbjct: 31 ALSFLENGARVFAIDKDREAIEDASQ---DFFDKFKDRITFFE 70


>gi|225859667|ref|YP_002741177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
 gi|225721520|gb|ACO17374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
          Length = 451

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 23  VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  +V+  L+ +    ++DA     T G      +F K    +  +D  P A+   +  
Sbjct: 291 VLYSEVVKALDVSKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 345

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +     F          ++ +P    +G   D
Sbjct: 346 AKRMG--FDNTHYEAGTAEEIIPRWYKEGYRAD 376


>gi|331235580|ref|XP_003330450.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309440|gb|EFP86031.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 340

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           ++D   GAGG S  F      VIA+D+DP  +   +   + Y 
Sbjct: 134 VVDGFCGAGGNSIQFAMTCDKVIAIDKDPNKIKLARSNAKIYG 176


>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
 gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
          Length = 431

 Score = 36.6 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P   ++ILD     GG +    +      V+A+D D   ++   E +   K   
Sbjct: 235 AVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLARLKLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           ++  A      D+   +  D ++ D   S+  +        +
Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKW 336


>gi|88812777|ref|ZP_01128023.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231]
 gi|88790015|gb|EAR21136.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231]
          Length = 235

 Score = 36.6 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
              +I+D   G G ++    + G  V+ +D  P  +   +  +  + E+F  F
Sbjct: 69  DDSLIVDVPCGTGRHAEVLLEQGHRVVGVDVSPAMLEVARRKLSRFGERFRTF 121


>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           FL6-60]
          Length = 430

 Score = 36.6 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
            +      H        + LL+P  G+ ILD     GG +    +     +V+A+D D  
Sbjct: 230 TVQDASAQH-------SVDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDES 282

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +   +E ++  ++   +         ++   +  D ++ D   S+  +        +
Sbjct: 283 RLKRVRENLQRLQQHAEIRCGDGRTPDEWARGRQFDRILLDAPCSATGVIRRHPDIKW 340


>gi|254463953|ref|ZP_05077364.1| UbiE/COQ5 methyltransferase familiy protein [Rhodobacterales
          bacterium Y4I]
 gi|206684861|gb|EDZ45343.1| UbiE/COQ5 methyltransferase familiy protein [Rhodobacterales
          bacterium Y4I]
          Length = 258

 Score = 36.6 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE 83
            L P PG  ILD   G G  +    +      +V  LD  P  ++  ++ ++    
Sbjct: 30 DALAPQPGDRILDLGCGNGLLTEELARATGPAGHVTGLDASPDMLAAARQRLQGRSN 86


>gi|30017517|gb|AAP12939.1| putative PRIP-interacting protein, 5'-partial [Oryza sativa
           Japonica Group]
          Length = 282

 Score = 36.6 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
            +++D   G GG +  F     +VIA+D DP  + C Q
Sbjct: 105 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQ 142


>gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555]
 gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016]
 gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555]
 gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 281

 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 25/218 (11%)

Query: 25  LEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           L+ ++   +      +++      T      ++   K    V A++ D   ++  +E ++
Sbjct: 32  LQDILEGTDINKNDFVIEIGPGVGTL-----TKELLKRAKKVCAIELDSDLIAILKEELK 86

Query: 80  DYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
            Y   F L       +   + + D+    +V +L                 K     + +
Sbjct: 87  HYPN-FELIHKDVLKTNFNEIIKDESSIKIVANLPY--YITTPIISKILNNKYNFKTLTI 143

Query: 138 SCSGISASDVV---NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
                    ++   N      L+ ++    + +   +++             + +  S +
Sbjct: 144 MIQKEVGERMISEPNCKRYGALSLLVQYYCDVEVLRKVSPYAF-------IPSPKVESIV 196

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           I+ T   +   +I      F+ +R   N   + L   L
Sbjct: 197 IKLTKLNNPRVKIKSEDLFFRIIRCSFNMRRKTLWNAL 234


>gi|48477962|ref|YP_023668.1| methyltransferase [Picrophilus torridus DSM 9790]
 gi|48430610|gb|AAT43475.1| methyltransferase [Picrophilus torridus DSM 9790]
          Length = 173

 Score = 36.2 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 28  VIALLNPAPGKVILDATFGAG-GY-SRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKE 83
           V+ ++N  P   I+D  FGAG GY S  F        V A++ D  A+S   E + D K 
Sbjct: 21  VLEVMNIQPDDRIID--FGAGDGYYSILFSNFLRCGYVYAIENDDEAISMINERINDNK- 77

Query: 84  QFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           +  +       ++           V  D+      ++    
Sbjct: 78  KVQVINGDLCDMELPEHNKAFFSNVFHDIECRDKLMEKIVN 118


>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score = 36.2 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L+P PG+ ++D     GG   +     K    + A D D   +   ++ ++    +    
Sbjct: 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKP 314

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  + + ++  D V+ D   +S      +    ++
Sbjct: 315 LVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWR 355


>gi|325958455|ref|YP_004289921.1| type 11 methyltransferase [Methanobacterium sp. AL-21]
 gi|325329887|gb|ADZ08949.1| Methyltransferase type 11 [Methanobacterium sp. AL-21]
          Length = 191

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 26  EKVIALLNPAPGKVILDATFGAG-GY----SRSFCKMGSNVIALDRDPFAVS-CGQETMR 79
           E+++ ++N   G   LDA  G G GY    +         + ALD  P ++    +E   
Sbjct: 21  EEILDVINLKSGDKFLDA--GCGDGYVSIEASKLVGSNGKIFALDVYPESIEGVAKEVKE 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
              E      A  +       D     ++ ++
Sbjct: 79  KGIENLEPILADVTDSIPLDDDSVDAVLMSNV 110


>gi|271969629|ref|YP_003343825.1| SAM-dependent methyltransferase [Streptosporangium roseum DSM
          43021]
 gi|270512804|gb|ACZ91082.1| SAM-dependent methyltransferase, putative [Streptosporangium
          roseum DSM 43021]
          Length = 258

 Score = 36.2 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
          + LL+P PG+ I+D   G G  +      G+ V+ +D
Sbjct: 31 VELLDPQPGERIVDLGCGTGVLTAEITSRGARVLGID 67


>gi|150401405|ref|YP_001325171.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanococcus aeolicus Nankai-3]
 gi|150014108|gb|ABR56559.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanococcus aeolicus Nankai-3]
          Length = 187

 Score = 36.2 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          VP+  E++    I  L   P  V++D   G+GG +    K    V A+D    A++  ++
Sbjct: 20 VPITKEEIRAVSIGKLQLKPNDVVVDIGCGSGGMTVEIAKRCKFVYAIDGSDNAINTTKK 79

Query: 77 TMRDYK 82
           +  + 
Sbjct: 80 NLERFN 85


>gi|326789507|ref|YP_004307328.1| methyltransferase type 11 [Clostridium lentocellum DSM 5427]
 gi|326540271|gb|ADZ82130.1| Methyltransferase type 11 [Clostridium lentocellum DSM 5427]
          Length = 282

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 24  LLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           ++EK IA +N   A G  +LD   G G Y+   C+ G +V  +D    +++  + +    
Sbjct: 55  MIEKTIAFINKRIAKGSTVLDLGCGPGLYTERLCESGHSVTGIDFSENSINYARGSAERK 114

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
             +       F  ++          +  ++G  S
Sbjct: 115 GLEIDYVCKNFFDMEYDGCYDVAMQIYGEIGTFS 148


>gi|217967500|ref|YP_002353006.1| methyltransferase type 11 [Dictyoglomus turgidum DSM 6724]
 gi|217336599|gb|ACK42392.1| Methyltransferase type 11 [Dictyoglomus turgidum DSM 6724]
          Length = 252

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
           L    G +ILD   G G ++    K G   I +DR    +   +E  +  K      +  
Sbjct: 40  LAIKRGYLILDLGCGFGRHTLELGKRGYRAIGIDRSEDLIEIAKEEAKKEKVFNVEFYIM 99

Query: 91  TFSQLQDYVPDKGVDGVVF 109
            +  ++       V   ++
Sbjct: 100 EYKDIEKLGYKFDVVFSLY 118


>gi|149279337|ref|ZP_01885468.1| methyltransferase [Pedobacter sp. BAL39]
 gi|149229863|gb|EDM35251.1| methyltransferase [Pedobacter sp. BAL39]
          Length = 243

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L++ + A L PA    ILD   G G +S    K G +V  +D     +   Q+  +    
Sbjct: 30  LIDNLSAYLKPAADARILDIACGRGRHSIYLNKKGYDVTGIDLSEQNIKYAQQFEKKNLH 89

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
            F       S +  +     +             ++
Sbjct: 90  FFVHDMRKLSFINYFDFAMNLFTSFGYFDTEKEHVN 125


>gi|224136780|ref|XP_002326943.1| predicted protein [Populus trichocarpa]
 gi|222835258|gb|EEE73693.1| predicted protein [Populus trichocarpa]
          Length = 215

 Score = 36.2 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
          G  I+D   G GG +  F +   +VIA+D DP  +   
Sbjct: 52 GDTIIDCFTGVGGNAIQFAQRYKHVIAIDIDPKKIDYA 89


>gi|158313747|ref|YP_001506255.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158109152|gb|ABW11349.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 304

 Score = 36.2 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           L  APG  I+D   G+G +S +  + G  V  +D    A+   +                
Sbjct: 74  LGLAPGSRIIDVPCGSGRHSLALAERGHRVTGVDLSAEAIEHARRAAAATGTAVEFVLGD 133

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             ++           +    G 
Sbjct: 134 MREIAPSGSFDAAVCLGNSFGY 155


>gi|306820623|ref|ZP_07454252.1| SAM-dependent methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551354|gb|EFM39316.1| SAM-dependent methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 186

 Score = 36.2 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 29  IALLNPAPG----KVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDY 81
           I  L         K+ +DAT G G  + +  +       + A D    A+   +  +   
Sbjct: 9   IQKLIIKSNLEDVKIAIDATLGNGKDTITIRETFGKKVKIYAFDIQRDAIERSKRNIPVE 68

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 F     +  D   ++ V  V+F+LG 
Sbjct: 69  YHDNIEFIQDSHEFIDKYVEEKVQLVMFNLGY 100


>gi|297852270|ref|XP_002894016.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339858|gb|EFH70275.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 36.2 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F      VIA+D DP  +   Q     Y   ++    +  F  L
Sbjct: 389 GIVIDCFTGVGGNAIQFASRRHYVIAIDLDPKKIDLAQHNAAIYGVADKIDFVKGDFFDL 448


>gi|329725493|gb|EGG61973.1| putative rRNA methylase [Staphylococcus epidermidis VCU144]
          Length = 187

 Score = 36.2 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
                +++DAT G G  +  F +   N  V   D    A+    +  +DY          
Sbjct: 18  INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDYSNVKLIQSGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                         +D  +F+LG 
Sbjct: 78  ENAKLHIPAQHHGCIDAAIFNLGY 101


>gi|27468352|ref|NP_764989.1| hypothetical protein SE1434 [Staphylococcus epidermidis ATCC 12228]
 gi|251811142|ref|ZP_04825615.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875819|ref|ZP_06284686.1| rRNA methylase family protein [Staphylococcus epidermidis SK135]
 gi|27315898|gb|AAO05033.1|AE016748_267 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805362|gb|EES58019.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294844|gb|EFA87371.1| rRNA methylase family protein [Staphylococcus epidermidis SK135]
 gi|329737178|gb|EGG73432.1| putative rRNA methylase [Staphylococcus epidermidis VCU028]
          Length = 187

 Score = 36.2 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89
                +++DAT G G  +  F +   N  V   D    A+    +  +DY          
Sbjct: 18  INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDYSNVKLIQSGH 77

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                         +D  +F+LG 
Sbjct: 78  ENAKLHIPAQHHGCIDAAIFNLGY 101


>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
 gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score = 36.2 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +    + V+A+D D   +    + +   + + 
Sbjct: 235 AIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +        +++   +  D ++ D   S+  +        +
Sbjct: 295 DVICGDARYPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336


>gi|332193981|gb|AEE32102.1| S-adenosylmethionine-dependent methyltransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 538

 Score = 36.2 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F      VIA+D DP  +   +     Y   ++    +  F  L
Sbjct: 370 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 429


>gi|163787432|ref|ZP_02181879.1| Cyclopropane-fatty-acyl-phospholipid synthase [Flavobacteriales
           bacterium ALC-1]
 gi|159877320|gb|EDP71377.1| Cyclopropane-fatty-acyl-phospholipid synthase [Flavobacteriales
           bacterium ALC-1]
          Length = 254

 Score = 36.2 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL- 87
           + +L+P P + ILD   G G  + S  K   N+I +D  P  ++  +    + +      
Sbjct: 23  VDVLDPKPEETILDLGCGTGELTYSISKKTLNIIGMDYSPEMIASAKVNFPEIQFFVKDA 82

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
               F    D +        + D       +   
Sbjct: 83  ANFNFDIQFDSIFSNATLHWILDYKSCVKSMYHN 116


>gi|42571775|ref|NP_973978.1| WW domain-containing protein [Arabidopsis thaliana]
          Length = 538

 Score = 36.2 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F      VIA+D DP  +   +     Y   ++    +  F  L
Sbjct: 368 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 427


>gi|77920262|ref|YP_358077.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM
          2380]
 gi|77546345|gb|ABA89907.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM
          2380]
          Length = 193

 Score = 36.2 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
            +H+ V  EK+IA L+  PG+ +LDA  G G  ++ F +       V AL  DP A
Sbjct: 16 SSEHL-VEKEKIIANLSIQPGQKVLDAGCGNGYMAKEFARQVGSSGRVYAL--DPDA 69


>gi|296270988|ref|YP_003653620.1| type 12 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296093775|gb|ADG89727.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833]
          Length = 258

 Score = 35.8 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 3/124 (2%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           + LL+P PG+ +LD   G G  +      G++V+ +D    + +  +  M  Y       
Sbjct: 31  LDLLDPKPGERVLDLGCGTGVLTAEIAARGAHVLGID---ASRAMIEAAMAKYPGLEFTV 87

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
                    +  D                        + +  G     M  +G  AS + 
Sbjct: 88  GDAHDFTVAHPYDAVFSNAALHWMSRDPDAVISCVRMALRPGGRFIAEMGGAGNCASLIS 147

Query: 149 NQAN 152
               
Sbjct: 148 AMKT 151


>gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 221

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQETMRDYKEQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+VIA+D DP   A++     +     +       F Q
Sbjct: 62  GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 121

Query: 95  L 95
           L
Sbjct: 122 L 122


>gi|297157316|gb|ADI07028.1| hypothetical protein SBI_03907 [Streptomyces bingchenggensis BCW-1]
          Length = 353

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
           V+  L+  PG   LD   G G    +  +       VI +D DP  V   +    D  
Sbjct: 118 VLDELDIRPGHTALDMGCGPGTDLAALAEAVTPSGTVIGIDADPEMVDRARGRTADLP 175


>gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana]
          Length = 239

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQETMRDYKEQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+VIA+D DP   A++     +     +       F Q
Sbjct: 80  GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 139

Query: 95  L 95
           L
Sbjct: 140 L 140


>gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 513

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VL  + +  LNP     ++DA  G G  G++ +  K   +V  +D  P ++   +E  + 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374

Query: 81  YKEQFSLFQATFSQLQDYVPDKG 103
                        + +  +P+  
Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395


>gi|260581738|ref|ZP_05849535.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127]
 gi|260095331|gb|EEW79222.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127]
          Length = 254

 Score = 35.8 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 22/164 (13%)

Query: 22  PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I       LL    GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++       +FSL+     +L +                +   I+      S     
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPMEKLAELPESHFDVITS---SFAFHYIENFPTLLSTIHDK 140

Query: 132 PLDMR---------MSCSGISASDVVNQANVKDLTRILGILGEE 166
                         ++               + +   L    EE
Sbjct: 141 LSSNGTLIFSQEHPITTCHKEGERWEKNDKKQQVAYRLNHYREE 184


>gi|170746537|ref|YP_001752797.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653059|gb|ACB22114.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 370

 Score = 35.8 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK 82
           P  G+ I+D   G GG + +       G+ +IA D DP  ++   E +R   
Sbjct: 165 PRAGETIVDLCAGGGGKTLALAAETGNGARLIATDGDPRRLAPIHERLRRSG 216


>gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
          Length = 513

 Score = 35.8 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VL  + +  LNP     ++DA  G G  G++ +  K   +V  +D  P ++   +E  + 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374

Query: 81  YKEQFSLFQATFSQLQDYVPDKG 103
                        + +  +P+  
Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395


>gi|148550480|ref|YP_001270582.1| type 12 methyltransferase [Pseudomonas putida F1]
 gi|148514538|gb|ABQ81398.1| Methyltransferase type 12 [Pseudomonas putida F1]
          Length = 207

 Score = 35.8 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 41  LDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYKEQFSLFQATFSQLQDYV 99
           +D   G+G  +R+  + G +V+A+DR+P A+       +     +       F  ++   
Sbjct: 45  VDLGCGSGNETRALLQAGWDVLAIDREPAAIEMVHAIGLDHPAAKLETATQWFESIEALP 104

Query: 100 PDKGVDGVVFDLGVSSMQIDCG 121
           P   +   +          +  
Sbjct: 105 PSSLIHAGMALPFCHPDHFEKF 126


>gi|153003173|ref|YP_001377498.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026746|gb|ABS24514.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 437

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 35  APGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYK 82
            PGK ++DA  GAGG S +     +   ++ ALD D   +   ++  R   
Sbjct: 237 RPGKTVVDACAGAGGKSLALAMEMRNKGSLHALDTDEGRLDDAKKRARRAG 287


>gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF
 gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 513

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VL  + +  LNP     ++DA  G G  G++ +  K   +V  +D  P ++   +E  + 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374

Query: 81  YKEQFSLFQATFSQLQDYVPDKG 103
                        + +  +P+  
Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395


>gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 513

 Score = 35.8 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VL  + +  LNP     ++DA  G G  G++ +  K   +V  +D  P ++   +E  + 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374

Query: 81  YKEQFSLFQATFSQLQDYVPDKG 103
                        + +  +P+  
Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395


>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
 gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
          Length = 430

 Score = 35.8 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +P PG+ +LDA    GG +    +    +   +A+D D   +   QE +        +  
Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGLTAKVIH 299

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              +  + + P+   D ++ D   S+  +        +
Sbjct: 300 GDAAAPEQWWPEGQFDRILLDAPCSATGVIRRHPDIKW 337


>gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 513

 Score = 35.8 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VL  + +  LNP     ++DA  G G  G++ +  K   +V  +D  P ++   +E  + 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374

Query: 81  YKEQFSLFQATFSQLQDYVPDKG 103
                        + +  +P+  
Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395


>gi|218887204|ref|YP_002436525.1| rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758158|gb|ACL09057.1| putative rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 243

 Score = 35.8 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 10/128 (7%)

Query: 41  LDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           +D T G  G+   F          V A D  P A++   E +           A   +  
Sbjct: 72  VDGTAGN-GHDTLFLARLVGARGLVHAFDVQPRALARTAERLASEG--LEERVALHGRGH 128

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDL 156
           + +        V+   +S+   +    GF       +  R   +  +   ++       L
Sbjct: 129 EELAAALASHGVWPPRISAAMFNL---GFLPGSDRSVTTRPETTLTALEALLPMMAPGGL 185

Query: 157 TRILGILG 164
             +    G
Sbjct: 186 ISLHVYAG 193


>gi|332717012|ref|YP_004444478.1| 3-oxoacyl-acyl-carrier-protein reductase [Agrobacterium sp. H13-3]
 gi|325063697|gb|ADY67387.1| 3-oxoacyl-acyl-carrier-protein reductase [Agrobacterium sp. H13-3]
          Length = 246

 Score = 35.8 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%)

Query: 53  SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112
           +    G+ VIA DRD  AV+   E      +  ++     + LQ  + D      V D+ 
Sbjct: 24  ALVAQGARVIAFDRDIEAVAALAEGFGGACDPVAVDLGDATALQAVMKDVANRFEVIDIL 83

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMR 136
           V++  +    +  +        + 
Sbjct: 84  VNNAGVLSPHKLGATTLDDWHRLM 107


>gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
 gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
          Length = 284

 Score = 35.8 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           G GG +R+    G+ +VIA++RD  A+   +E    Y ++ ++     +   
Sbjct: 57  GPGGLTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFD 108


>gi|332522818|ref|ZP_08399070.1| ribosomal RNA large subunit methyltransferase A family protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314082|gb|EGJ27067.1| ribosomal RNA large subunit methyltransferase A family protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 273

 Score = 35.8 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 14/204 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+   LE + + L P     ILD   G G YSR+  +     ++A D    ++    +  
Sbjct: 74  HI---LEAISSYLQPDKNTTILDVACGEGYYSRALAQTPNHQILAFDLSKESILLAAK-- 128

Query: 79  RDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +D   + + F    ++L       D + D        +            +  +      
Sbjct: 129 KDLLNRVTWFVGDLAKLPLADQSVDIILDVFSPAHYQEFQRVLKPTGKIIKVVTASDHLK 188

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
              +++ S IS+ D  NQ+ +    +               + I ++  S   Q T    
Sbjct: 189 ELRQVAASQISSKDYSNQSVITHFAQAFPDYA--ISHHSHTYPINQKDLSDFTQMTPLFF 246

Query: 193 SLIQKTVYFSKNNRIHPATRSFQA 216
           ++  K +       I  A     A
Sbjct: 247 NVDTKQIEMESIREITIAADILIA 270


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.133    0.413 

Lambda     K      H
   0.267   0.0409    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,755,626,520
Number of Sequences: 14124377
Number of extensions: 159645143
Number of successful extensions: 369659
Number of sequences better than 10.0: 3330
Number of HSP's better than 10.0 without gapping: 2667
Number of HSP's successfully gapped in prelim test: 663
Number of HSP's that attempted gapping in prelim test: 358396
Number of HSP's gapped (non-prelim): 3430
length of query: 341
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 202
effective length of database: 2,879,505,227
effective search space: 581660055854
effective search space used: 581660055854
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 81 (35.8 bits)