BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] (341 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] gi|254547862|gb|ACT57578.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 332 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN Sbjct: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC Sbjct: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 >gi|315122411|ref|YP_004062900.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495813|gb|ADR52412.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 264/342 (77%), Positives = 298/342 (87%), Gaps = 1/342 (0%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 M+S+ K SS I T H+PVLLE+VIALL P+PGK+I+DATFGAGGYS SFC+MGS+ Sbjct: 1 MKSRYLKETSSPIDSTTNGHIPVLLEEVIALLKPSPGKIIVDATFGAGGYSHSFCQMGSS 60 Query: 61 VIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 VIALDRDP AV+ GQE M+DY K++ SLF+ATFS+L+DYVPD GVDG+VFDLGVSSMQID Sbjct: 61 VIALDRDPLAVAAGQEIMKDYIKKKISLFEATFSRLKDYVPDNGVDGIVFDLGVSSMQID 120 Query: 120 CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 CGDRGFSFQK GPLDMRMSCSG+SASDVVN A+VKDL RILGILGEEKQASRIAHAIVKR Sbjct: 121 CGDRGFSFQKHGPLDMRMSCSGVSASDVVNHADVKDLIRILGILGEEKQASRIAHAIVKR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ PFQTT+DLSSLIQ TVY NNRIHPATRSFQALRIFVN+EI EL +GL SAEKAL Sbjct: 181 RKHLPFQTTEDLSSLIQNTVYIRNNNRIHPATRSFQALRIFVNDEIRELEKGLLSAEKAL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG+LIVVSFHSLEDRLVKKFFASRSGKV AVRHMIPS+ HPAVFQS+TKKVV+PTQ D Sbjct: 241 KDGGVLIVVSFHSLEDRLVKKFFASRSGKVTAVRHMIPSHIHPAVFQSLTKKVVIPTQSD 300 Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 +A NRR+RSAKLR G+RT + ++D SF +L LP LSQFRG Sbjct: 301 IAKNRRARSAKLRVGIRTSAQPMKDLSFEYLAHLPALSQFRG 342 >gi|20808080|ref|NP_623251.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter tengcongensis MB4] gi|254479532|ref|ZP_05092851.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM 12653] gi|21759279|sp|Q8R9F9|RSMH_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|20516663|gb|AAM24855.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Thermoanaerobacter tengcongensis MB4] gi|214034534|gb|EEB75289.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM 12653] Length = 308 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEHLNINPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDEEAILAAKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DYK + F +++ + + + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKDYKN-VIYIKDNFKNIKEILRNLGIEKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + K+L R++ GEEK ASRIA IV+ R+ +TT L Sbjct: 124 MRMDKTSPFSAYDVVNRYSEKELERVIREYGEEKWASRIAKFIVEERKKGDIKTTSQLVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + S + HPA R+FQA+RI VN E+++L + L + L+ G + V++FHS Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQAIRIEVNEELKDLDRALEDMVEVLRGKGRIAVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + V + ITKK ++P++E+V N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPGLPCTCGKQPVIKIITKKPILPSKEEVEENPRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|228992654|ref|ZP_04152580.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus pseudomycoides DSM 12442] gi|228766986|gb|EEM15623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus pseudomycoides DSM 12442] Length = 317 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 7 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 67 NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETT 186 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F S I + + IT+K ++P+ E++ N R+ Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 307 RSAKLRIAEK 316 >gi|78043538|ref|YP_360897.1| S-adenosyl-methyltransferase MraW [Carboxydothermus hydrogenoformans Z-2901] gi|88909191|sp|Q3AAD7|RSMH_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77995653|gb|ABB14552.1| S-adenosyl-methyltransferase MraW [Carboxydothermus hydrogenoformans Z-2901] Length = 311 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 127/303 (41%), Positives = 175/303 (57%), Gaps = 6/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 HVPVLL + I LN G V +DAT G GG+S K V+ LD+D A++ + + Sbjct: 5 HVPVLLNETIEHLNLKAGGVYVDATLGGGGHSEEILKRADCRVVGLDQDEDALNHAAKRL 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + ++F ++ F ++ V VDGV+ DLGVSS Q+D +GFSFQ GPLDM Sbjct: 65 APFGDRFIPVKSNFRNIRKVVYRLGLDAVDGVLMDLGVSSFQLDNPLKGFSFQHDGPLDM 124 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +A+DVVN K+L RI GEE+ A +IA AIVKRR+ PF +T +L+ Sbjct: 125 RMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEE 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I + V HPA R FQA+RI VN+E+ L +GL A + LK GG ++V++FHSLE Sbjct: 185 IIRAVPAKARREKHPAKRVFQAIRIEVNDELSSLEEGLVGAVEVLKPGGRIVVITFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRLVK FF + + + ITKK +VP++E++ NRR+ SAKLRA Sbjct: 245 DRLVKNFFRREENPCICPKDFPMCVCGKKPRLKVITKKPLVPSEEEIEKNRRAHSAKLRA 304 Query: 314 GMR 316 + Sbjct: 305 AEK 307 >gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3] gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3] Length = 341 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +VIA L PA GKVILD TFGAGGY+++ G+NVIALDRDP A++ GQ + Sbjct: 19 HIPVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGANVIALDRDPNAIAGGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +L Q+ FS L + P+ G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 ANGGRLTLIQSQFSDLARHAPEGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSS 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN+A V DL RI G LGEEKQ RIA AI KRR PF+TT+DL+ LI+ Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKRRAEEPFRTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RH+ PA+F++I K +V + E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSERSGKAAGSRHLPMVEDKPAIFENIGKPMVAASDEEAEINPRARSAKLRAGLRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S LP L +L + G Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341 >gi|159185048|ref|NP_355067.2| S-adenosyl-methyltransferase MraW [Agrobacterium tumefaciens str. C58] gi|20138929|sp|P58745|RSMH_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159140322|gb|AAK87852.2| S-adenosyl methionine-dependent methytransferase [Agrobacterium tumefaciens str. C58] Length = 341 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 180/323 (55%), Positives = 232/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +VIA L PAPGK+ILD TFGAGGY+++ G+NVIALDRDP A++ G+ + Sbjct: 19 HIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQGANVIALDRDPTAIAGGEAMVV 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL Q+ FS L + P+ G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 ANGGRLSLIQSQFSDLAKHAPEDGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN+A V DL RI G LGEEKQ RIA AI K+R PF+TT+DL+ LI+ Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEEPFRTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELAQ L +AE++LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RH+ PA+F++I K ++ + E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSDRSGKAAGSRHLPMVEDKPAIFENIGKPMIAASDEEAELNPRARSAKLRAGLRTTA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S LP L +L + G Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341 >gi|228998700|ref|ZP_04158287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock3-17] gi|229006202|ref|ZP_04163888.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock1-4] gi|228755043|gb|EEM04402.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock1-4] gi|228761168|gb|EEM10127.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock3-17] Length = 317 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 7 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 67 NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETT 186 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F S I + + IT+K ++P+ E++ N R+ Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 307 RSAKLRIAEK 316 >gi|229086483|ref|ZP_04218655.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-44] gi|228696800|gb|EEL49613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-44] Length = 332 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 22 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSRLTEGGKLIAFDQDEIAIQ 81 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 82 NAKEKFSSYGDQFVTVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHH 141 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A +VVN + + L RI GEEK + +IA I R++ +TT Sbjct: 142 DAPLDMRMDQDASLTAYEVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKTIETT 201 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + + HPA R FQA+RI VN+E++ + L SA K +K GG + V Sbjct: 202 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIKMVKPGGRVSV 261 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F S I + + IT+K ++P++E++ N R+ Sbjct: 262 ITFHSLEDRICKTTFKRNSSTPQLPPGLPIIPDEFKPKLKLITRKPILPSEEELEENNRA 321 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 322 RSAKLRIAEK 331 >gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] Length = 332 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 147/328 (44%), Positives = 195/328 (59%), Gaps = 5/328 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + + H+PVL + + LL P G + +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MKPSDTRHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + D + +L Q FS L D + VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 AGGADLVADAGHRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R AP TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVAKVVRA-KPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F RS RH+ F ++K+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLTERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336 AKLR RT + P L ++ Sbjct: 300 AKLRGAERTEAPAHAAGDLPGWPTLASV 327 >gi|289578681|ref|YP_003477308.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9] gi|289528394|gb|ADD02746.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9] Length = 308 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 172/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ G+E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTKGKLIAIDRDLDAIKAGKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYKN-VKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L +++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M V + ITKK VVP++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|116253056|ref|YP_768894.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. viciae 3841] gi|262825308|sp|Q1ME25|RSMH_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115257704|emb|CAK08802.1| putative S-adenosyl-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 341 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 177/323 (54%), Positives = 225/323 (69%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+A L PAPGK ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLDEVLAALAPAPGKFILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLRLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 KFF+ R+GK RH+ ++ A F+++ K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFEAVGKPMVSASEAEAEINPRARSAKLRAGLRTYA 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|167040640|ref|YP_001663625.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514] gi|256752962|ref|ZP_05493788.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus CCSD1] gi|300914681|ref|ZP_07131997.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561] gi|307724085|ref|YP_003903836.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513] gi|262825863|sp|B0K3H8|RSMH_THEPX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166854880|gb|ABY93289.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514] gi|256748157|gb|EEU61235.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus CCSD1] gi|300889616|gb|EFK84762.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561] gi|307581146|gb|ADN54545.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513] Length = 308 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ RGFS+ K P+D Sbjct: 65 LKNYKN-VEYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + V + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|167037220|ref|YP_001664798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115639|ref|YP_004185798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|262825860|sp|B0K8J9|RSMH_THEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166856054|gb|ABY94462.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928730|gb|ADV79415.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 308 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ RGFS+ K P+D Sbjct: 65 LKNYKNA-EYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + V + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|222149144|ref|YP_002550101.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4] gi|263446656|sp|B9JY62|RSMH_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221736130|gb|ACM37093.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4] Length = 341 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 175/322 (54%), Positives = 230/322 (71%), Gaps = 1/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE VI L P+ GKVILD TFGAGGY+ + G++VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEPVIEALEPSAGKVILDGTFGAGGYTSAILDTGADVIALDRDPNAIAGGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +L FS L ++ P+ G+DG+V D+GVSSMQID +RGFSFQ++GPLDMRMS Sbjct: 79 ARAGRLTLHHTRFSTLDNFAPEGGLDGIVLDIGVSSMQIDEAERGFSFQRNGPLDMRMSG 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQ+ RIA AI KRR + PFQTT+DL+ +I+ Sbjct: 139 TGVSAADVVNRAKVGDLIRIFGFLGEEKQSGRIARAIEKRRVNHPFQTTRDLAGMIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAEALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RHM + PA F+ + K +V T+E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSDRSGKAAGSRHMPMAFERPATFEPVGKGMVTATEEEAEINPRARSAKLRAGIRTAH 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFR 340 +++ D S LP L + + Sbjct: 319 PAMKADFSIFDLPDLAEIERLG 340 >gi|297544901|ref|YP_003677203.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842676|gb|ADH61192.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 308 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEQILKRLTKGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYKN-VKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L +++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M V + ITKK VVP++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|15965937|ref|NP_386290.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti 1021] gi|307308247|ref|ZP_07587956.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C] gi|307319714|ref|ZP_07599139.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83] gi|20139051|sp|Q92NL4|RSMH_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15075206|emb|CAC46763.1| Probable SAM-dependent methytransferase [Sinorhizobium meliloti 1021] gi|306894645|gb|EFN25406.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83] gi|306901245|gb|EFN31851.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C] Length = 341 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 179/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+A L+PAPGK+ILD TFGAGGY+ + G++V+ALDRDP A++ GQ M Sbjct: 19 HIPVLLKEVLAALDPAPGKIILDGTFGAGGYASAILDAGADVVALDRDPTAIAAGQSMMH 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 ASGGRLKLVHSRFSDLAEHAPAQGLDGVVLDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR PF+TT+DL++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAETPFETTRDLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAHALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V ++E+ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFTPVGKPMVAASEEEASRNPRARSAKLRAGVRTEA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341 >gi|326391684|ref|ZP_08213209.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus JW 200] gi|325992262|gb|EGD50729.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus JW 200] Length = 308 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYKN-VEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA I K R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + + + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|307266529|ref|ZP_07548062.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii Rt8.B1] gi|306918448|gb|EFN48689.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii Rt8.B1] Length = 308 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLPTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYKN-VEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA I K R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + + + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|323706128|ref|ZP_08117697.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium xylanolyticum LX-11] gi|323534572|gb|EGB24354.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium xylanolyticum LX-11] Length = 310 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 8/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I L P + +D T G GG+S + +IA+DRD A+ Sbjct: 4 KHESVLLQETIEYLEIKPDGIYVDGTLGGGGHSYEILRRLDKGKLIAIDRDMDAIKAASI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + ++D + G++ + + DLGVSS Q+D RGFS+ PL Sbjct: 64 RLKDFNNT-TYIHDNYKNIKDILKKCGIESIDGALLDLGVSSYQLDEAQRGFSYMHDAPL 122 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A VVN + ++ +++ GEE A RIA IV+ R+ P +TT +L Sbjct: 123 DMRMDKESDITAEYVVNNYSEDEIAKVISDYGEELWAKRIAKFIVEERRRKPIKTTFELV 182 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + SK HPA R+FQA+RI VN E++ L + + GG + +++FH Sbjct: 183 DIIKKAIPASKRRTGPHPAKRTFQAIRIEVNEELKGLGDAIADFVDVMNPGGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + +++ + V + ITKK +VP++ ++ N RSRSAKL Sbjct: 243 SLEDRIVKNAYKKLEDPCTCPKNLPCTCGKKPVIKIITKKPIVPSEVEIKVNPRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris CGA009] gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009] Length = 332 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 145/328 (44%), Positives = 194/328 (59%), Gaps = 5/328 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + + H+PVL + + LL P G + +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MKPSDARHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPSAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + + + +L Q FS L D + VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 AGGADLVTEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R P TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK G L VV Sbjct: 181 KALADIVAKVVRA-KPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPSGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F A RS RH+ F ++K+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336 AKLR RT + P L ++ Sbjct: 300 AKLRGAERTESPAHAAGDLPGWPTLASV 327 >gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42] gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42] Length = 341 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 178/323 (55%), Positives = 228/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L+PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGAEVIALDRDPSAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L A FS L D+ P G+DGVV D+GVSSMQID +RGFSFQKSGPLDMRMS Sbjct: 79 AHAGRLRLIHAQFSNLGDHAPQGGLDGVVLDIGVSSMQIDEPERGFSFQKSGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR+ PF+TT+DL+ LI+ Sbjct: 139 TGVSAADVVNRAKVADLIRIFHFLGEENQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERTLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+G+ RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGRATGSRHLPAAHERAATFTAIGKPMVSASEAEAEANPRARSAKLRAGLRTDA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652] gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652] Length = 341 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 174/323 (53%), Positives = 225/323 (69%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQ+D +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DV+N+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 TGVSAADVLNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETVLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F ++ K +V ++ + N R+RSAKLRAG RT Sbjct: 259 KFFSDRAGKASGSRHLPAAHERAATFTAVGKSMVSASEAEAESNPRARSAKLRAGQRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|229162854|ref|ZP_04290811.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus R309803] gi|228620736|gb|EEK77605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus R309803] Length = 310 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFASYGEQFVTVKSNFRYLSEKLQELGIAEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAISMVKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPEEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|209884374|ref|YP_002288231.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5] gi|262824708|sp|B6JCF0|RSMH_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209872570|gb|ACI92366.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5] Length = 333 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 144/330 (43%), Positives = 203/330 (61%), Gaps = 5/330 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + + H+ VL + + L P G + +DATFGAGGYSR G+ VI +DRD A+ Sbjct: 1 MSAAVSRHISVLGREAVEFLAPRAGGIYVDATFGAGGYSRRILAVAGARVIGIDRDRTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + + +L Q FSQL + VDG+V D+GVSSMQ+D +RGFSF+ Sbjct: 61 AEAFDLVEQAEGRLTLVQDRFSQLDEVCASQNAPQVDGIVMDIGVSSMQLDRAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G SA+DVV A+ KDL I+ I GEE+ + +A AIV+ RQ P TT Sbjct: 121 QDGPLDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVRARQEKPILTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V+ + N IHPATR+FQALRIFVN E++EL L ++E+ LK GG L+VV Sbjct: 181 KVLADIVASVVHT-RPNDIHPATRTFQALRIFVNEELDELQSALHASERTLKPGGRLVVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDR+VK F +R+ + RHM F+ +TK+ VV + ++A N R+RS Sbjct: 240 TFHSLEDRIVKNFINARASRGGGSRHMPDVERTAPSFEILTKRPVVADENEIAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338 AKLRA RT S + D+ P L T+ + Sbjct: 300 AKLRAAERTANASHDADTSFDWPTLRTVMK 329 >gi|227822659|ref|YP_002826631.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234] gi|262825425|sp|C3MEN7|RSMH_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|227341660|gb|ACP25878.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234] Length = 341 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 178/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PV+L +V+A L PAPGKVILD TFGAGGY+ + G++VIALDRDP A++ GQ + Sbjct: 19 HIPVMLAEVLAALEPAPGKVILDGTFGAGGYTSAILDAGADVIALDRDPTAIAAGQPMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L + FS+L D+VP+ G+DG+VFD+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 AAGGRLRLIHSRFSELADHVPEGGLDGIVFDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR APF+TT++L++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAEAPFETTRNLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELANALFAAERVLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 FF RSGK RH+ A A F + K +V ++++ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARDATFTPVGKPMVAASEDEASRNPRARSAKLRAGVRTPA 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 D S +LP L +L++ G Sbjct: 319 ASPGNDLSIFNLPELASLARLGG 341 >gi|218235035|ref|YP_002368718.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264] gi|263446873|sp|B7H6Q4|RSMH_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218162992|gb|ACK62984.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264] Length = 310 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + LN P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLNIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|323701280|ref|ZP_08112955.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM 574] gi|323533882|gb|EGB23746.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL++ I LN P + +D T G G+S + G +I LD+DP A++ Sbjct: 1 MEFKHISVLLKESINGLNINPQGIYVDCTLGGAGHSTEILRRLGPGGRLIGLDQDPAAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++ + +F +A F ++ + + VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 NAEQRLQRFAGRFQAVRANFVGIKQVLAELGISTVDGVLFDLGVSSYQLDTPERGFSYMH 120 Query: 130 SGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +++ ++VN ++LT I+ GEE+ A RIA IV+ RQ P TT Sbjct: 121 DAELDMRMDPDQPTSAKELVNDLPEEELTNIIRKYGEERWAKRIASFIVRERQRRPITTT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ V ++ HPA R+FQALRI VNNE+ L ++ A + LK GG + V Sbjct: 181 GQLVEIIKAAVPANARREGPHPAKRTFQALRIAVNNELGILKGAIQGAVQVLKPGGRICV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR++K F + + + IT K + P E++A+N R+ Sbjct: 241 ITFHSLEDRIIKDTFKELANPCTCPPSFPVCNCGKQPQVKIITNKPIEPGAEELAYNPRA 300 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 301 RSAKLRIAEK 310 >gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS 571] gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571] Length = 346 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 146/328 (44%), Positives = 197/328 (60%), Gaps = 6/328 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PV+L +V+A L P LD TFGAGGY+R+ + VIA+DRDP A++ GQ Sbjct: 17 ARHLPVMLAEVLAHLAPKDAGTCLDGTFGAGGYTRAILEAANGRVIAIDRDPTAIAGGQA 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L FS L D +DGVV D+GVSSMQ+D DRGFSF++ GPL Sbjct: 77 LVEETGGRLTLVHERFSHLDQVAQDLGAAPLDGVVLDIGVSSMQLDEADRGFSFRRDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM+ G SA+D+V + +L ++ LGEE+ + +IA AIV R +P T L+ Sbjct: 137 DMRMANDGPSAADLVADLDEVELAHVIWTLGEERFSRQIARAIVNARAESPITRTTQLAD 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K V+ K +HPATR+FQALRI VN E++EL L +AE+ LK GG L+VV+FHSL Sbjct: 197 IVSKVVWA-KPGEMHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F + RS A RHM + F+ + K V P ++VA N R+RSAKLRA Sbjct: 256 EDRIVKNFLSHRSKAPSASRHMPQAEGPAPSFRLVAKGAVEPGSDEVAGNPRARSAKLRA 315 Query: 314 GMRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + D L LSQ RG Sbjct: 316 AERTDAPAHPDGDLAGLLP-ADLSQRRG 342 >gi|270307713|ref|YP_003329771.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS] gi|270153605|gb|ACZ61443.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS] Length = 349 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 184/313 (58%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ Sbjct: 2 TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ + L F+ L+D V G++FDLG+SSMQ+D + GFSFQ Sbjct: 62 LAAERLKGFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR S SA+D+VN + L+ ++ GEE + RIA AI+++R PF+TT Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYGLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+S+I+K V ++ RIHPATR+FQALRI VN E+ L L A+ L GG L+V+ Sbjct: 179 TELASVIEKAVGG-RHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK++F + + + H + I ++V+ P+ E+++ N RSR Sbjct: 238 SYHSLEDRIVKQYFQREAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVER 320 SAK+R R +E Sbjct: 298 SAKMRVAERIIEP 310 >gi|57234909|ref|YP_181088.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195] gi|88909197|sp|Q3Z9L1|RSMH_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57225357|gb|AAW40414.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195] Length = 349 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 185/313 (59%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ Sbjct: 2 TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ + L F+ L+D V G++FDLG+SSMQ+D + GFSFQ Sbjct: 62 LAAERLKCFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR S SA+D+VN ++ L+ ++ GEE + RIA AI+++R PF+TT Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYDLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+S+I+K V ++ RIHPATR+FQALRI VN E+ L L A+ L GG L+V+ Sbjct: 179 TELASVIEKAVGG-RHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK++F + + + H + I ++V+ P+ E+++ N RSR Sbjct: 238 SYHSLEDRIVKQYFQKEAKGCICPDDIPQCVCNHKPSLRLINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVER 320 SAK+R R ++ Sbjct: 298 SAKMRVAERIIQP 310 >gi|134298535|ref|YP_001112031.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1] gi|263446306|sp|A4J2A3|RSMH_DESRM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134051235|gb|ABO49206.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1] Length = 313 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 171/312 (54%), Gaps = 9/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + I L PG + +D T G G+S + ++ +D+DP A++ Sbjct: 1 MEFKHVSVLLHESIDGLKIKPGGIYVDCTLGGAGHSLEILRRLGPEGKLVGIDQDPAAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++++ QF Q F Q++ + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 NAAEKLQEFPGQFHAVQRNFFQIKQILREMAISEVDGILFDLGVSSYQLDTPERGFSYMH 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ISA ++VN + ++L I+ GE++ A RIA IVK R+ TT Sbjct: 121 DAELDMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKERKKRAIHTT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ V ++ HPA R+FQALRI VNNE+E L Q ++ A ALK+GG + V Sbjct: 181 GELVDIIKAAVPVGARREGPHPAKRTFQALRIAVNNELEILEQTMKDAVTALKSGGRISV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR++K F + + + +T K + P++E++ N R+ Sbjct: 241 ITFHSLEDRIIKDTFKELANPCTCPPAFPVCACGKQPQIKIVTGKPIQPSKEELEHNPRA 300 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 301 RSAKLRIAEKLN 312 >gi|206976726|ref|ZP_03237630.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97] gi|217961340|ref|YP_002339908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187] gi|229140568|ref|ZP_04269123.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST26] gi|229198030|ref|ZP_04324744.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1293] gi|263447288|sp|B7HM39|RSMH_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206745036|gb|EDZ56439.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97] gi|217067703|gb|ACJ81953.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187] gi|228585509|gb|EEK43613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1293] gi|228643129|gb|EEK99405.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST26] Length = 310 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVRSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|42783012|ref|NP_980259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987] gi|47565791|ref|ZP_00236830.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241] gi|222097364|ref|YP_002531421.1| s-adenosyl-methyltransferase mraw [Bacillus cereus Q1] gi|228987063|ref|ZP_04147188.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157497|ref|ZP_04285574.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 4342] gi|88911698|sp|P62468|RSMH_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447274|sp|B9IVZ5|RSMH_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42738939|gb|AAS42867.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987] gi|47557071|gb|EAL15400.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241] gi|221241422|gb|ACM14132.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Q1] gi|228625947|gb|EEK82697.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 4342] gi|228772657|gb|EEM21098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324327818|gb|ADY23078.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 310 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|229075675|ref|ZP_04208657.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-18] gi|229098389|ref|ZP_04229334.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-29] gi|228685006|gb|EEL38939.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-29] gi|228707451|gb|EEL59642.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-18] Length = 310 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|209550182|ref|YP_002282099.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM2304] gi|262825400|sp|B5ZWK2|RSMH_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209535938|gb|ACI55873.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 341 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 177/323 (54%), Positives = 228/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V++ L PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLDEVLSALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIASGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR+ PF+TT+DL+ LI+ Sbjct: 139 AGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|316933178|ref|YP_004108160.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1] gi|315600892|gb|ADU43427.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1] Length = 332 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 149/328 (45%), Positives = 193/328 (58%), Gaps = 5/328 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + H+ HVPVL + + LL P G V +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MSHSDSRHVPVLGPEAVGLLAPRDGGVYVDGTFGAGGYTRLILQTAGSRVIAIDRDPTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 G + + + +L Q FS L D + VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 VGGAGLVAEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVIDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R P TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVAKVVRA-KPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F A RS RH+ F + K+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLAKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336 AKLR RT + P L ++ Sbjct: 300 AKLRGAERTEAPAHAAGDLPGWPTLASV 327 >gi|49478448|ref|YP_037980.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar konkukian str. 97-27] gi|54036189|sp|Q6HEP6|RSMH_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49330004|gb|AAT60650.1| S-adenosyl-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 310 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|30022007|ref|NP_833638.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 14579] gi|75762006|ref|ZP_00741921.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206971097|ref|ZP_03232048.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134] gi|218899072|ref|YP_002447483.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842] gi|228902424|ref|ZP_04066578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 4222] gi|228909744|ref|ZP_04073567.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 200] gi|228922671|ref|ZP_04085971.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941007|ref|ZP_04103565.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954195|ref|ZP_04116223.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960136|ref|ZP_04121800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966872|ref|ZP_04127916.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar sotto str. T04001] gi|228973938|ref|ZP_04134513.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980527|ref|ZP_04140837.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis Bt407] gi|229047603|ref|ZP_04193193.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH676] gi|229071418|ref|ZP_04204640.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus F65185] gi|229081171|ref|ZP_04213681.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-2] gi|229111388|ref|ZP_04240941.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-15] gi|229129196|ref|ZP_04258169.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-Cer4] gi|229146490|ref|ZP_04274861.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST24] gi|229152116|ref|ZP_04280311.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1550] gi|229180194|ref|ZP_04307538.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 172560W] gi|229192088|ref|ZP_04319057.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 10876] gi|296504412|ref|YP_003666112.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171] gi|33301351|sp|Q819P8|RSMH_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446850|sp|B7IVF3|RSMH_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29897563|gb|AAP10839.1| S-adenosyl-methyltransferase mraW [Bacillus cereus ATCC 14579] gi|74490508|gb|EAO53809.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206733869|gb|EDZ51040.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134] gi|218540802|gb|ACK93196.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842] gi|228591414|gb|EEK49264.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 10876] gi|228603403|gb|EEK60880.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 172560W] gi|228631465|gb|EEK88099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1550] gi|228637123|gb|EEK93582.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST24] gi|228654433|gb|EEL10298.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-Cer4] gi|228672164|gb|EEL27455.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-15] gi|228702215|gb|EEL54691.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-2] gi|228711709|gb|EEL63662.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus F65185] gi|228723850|gb|EEL75205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH676] gi|228779347|gb|EEM27604.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis Bt407] gi|228785804|gb|EEM33808.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792971|gb|EEM40529.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar sotto str. T04001] gi|228799652|gb|EEM46605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805515|gb|EEM52106.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818686|gb|EEM64753.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837100|gb|EEM82441.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228850033|gb|EEM94864.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 200] gi|228857168|gb|EEN01674.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 4222] gi|296325464|gb|ADH08392.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171] gi|326941688|gb|AEA17584.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar chinensis CT-43] Length = 310 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|268610557|ref|ZP_06144284.1| S-adenosyl-methyltransferase MraW [Ruminococcus flavefaciens FD-1] Length = 313 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 8/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H+PV+L + I L P + +D T G G+S + +IALDRDP AV+ E Sbjct: 5 HIPVMLTECIEGLAIDPDGIYVDGTAGGAGHSSAIAAKLSEKGRLIALDRDPDAVAVATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + +S+++ + VDG++ DLGVSS Q+D G RGFS+ PL Sbjct: 65 RLSKFSNA-QVIHSNYSEIRSVLDRLEIDSVDGILMDLGVSSFQLDEGSRGFSYHTDAPL 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D+VN + +L RI+ GEEK + RIA I+K R+ AP +TT L+ Sbjct: 124 DMRMSKVGTSAADIVNTYSEAELARIMFEYGEEKFSRRIASNIIKAREKAPVETTLQLAD 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+++V +P ++FQALRI VN+E + L++GL A LK G L V++FHSL Sbjct: 184 IIRESVPQKARRDKNPCKKTFQALRIAVNSEFDHLSKGLEDAFYCLKPQGRLAVITFHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ FA+ + + + +K + +E++ N RSRSAKLR Sbjct: 244 EDRLVKQKFAAWCKGCICPPDFPQCVCGRKPEGRLVNRKPIEAGEEELENNNRSRSAKLR 303 Query: 313 AGMRTVE 319 R+ E Sbjct: 304 IIERSGE 310 >gi|229092966|ref|ZP_04224098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-42] gi|228690420|gb|EEL44205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-42] Length = 310 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|30263920|ref|NP_846297.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames] gi|47529351|ref|YP_020700.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames Ancestor'] gi|52141570|ref|YP_085259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus E33L] gi|65321245|ref|ZP_00394204.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Bacillus anthracis str. A2012] gi|118479138|ref|YP_896289.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis str. Al Hakam] gi|165872265|ref|ZP_02216902.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488] gi|167641107|ref|ZP_02399362.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193] gi|170709248|ref|ZP_02899669.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389] gi|177655554|ref|ZP_02936964.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174] gi|190566055|ref|ZP_03018974.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis Tsiankovskii-I] gi|196035938|ref|ZP_03103340.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W] gi|196038800|ref|ZP_03106108.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99] gi|196045790|ref|ZP_03113019.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108] gi|218905049|ref|YP_002452883.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820] gi|225865900|ref|YP_002751278.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102] gi|227813172|ref|YP_002813181.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684] gi|228916556|ref|ZP_04080122.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928967|ref|ZP_04091999.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935234|ref|ZP_04098060.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947638|ref|ZP_04109928.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123432|ref|ZP_04252636.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 95/8201] gi|229186159|ref|ZP_04313328.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BGSC 6E1] gi|229603937|ref|YP_002868154.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248] gi|254721453|ref|ZP_05183242.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A1055] gi|254735959|ref|ZP_05193665.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Western North America USA6153] gi|254754371|ref|ZP_05206406.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Vollum] gi|254756738|ref|ZP_05208767.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Australia 94] gi|301055409|ref|YP_003793620.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis CI] gi|33301354|sp|Q81WC3|RSMH_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77416580|sp|Q636A8|RSMH_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446803|sp|C3P688|RSMH_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446820|sp|C3L6F3|RSMH_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446828|sp|A0RHT9|RSMH_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446838|sp|B7JK06|RSMH_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446859|sp|C1EPT2|RSMH_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|30258564|gb|AAP27783.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames] gi|47504499|gb|AAT33175.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames Ancestor'] gi|51975039|gb|AAU16589.1| S-adenosyl-methyltransferase [Bacillus cereus E33L] gi|118418363|gb|ABK86782.1| S-adenosyl-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711941|gb|EDR17481.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488] gi|167510887|gb|EDR86278.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193] gi|170125855|gb|EDS94761.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389] gi|172080083|gb|EDT65180.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174] gi|190562974|gb|EDV16940.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis Tsiankovskii-I] gi|195991587|gb|EDX55553.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W] gi|196023230|gb|EDX61908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108] gi|196030523|gb|EDX69122.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99] gi|218537984|gb|ACK90382.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820] gi|225790748|gb|ACO30965.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102] gi|227005932|gb|ACP15675.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684] gi|228597335|gb|EEK54986.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BGSC 6E1] gi|228660208|gb|EEL15844.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 95/8201] gi|228812158|gb|EEM58489.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824399|gb|EEM70205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830774|gb|EEM76379.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843135|gb|EEM88217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268345|gb|ACQ49982.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248] gi|300377578|gb|ADK06482.1| S-adenosyl-methyltransferase MraW [Bacillus cereus biovar anthracis str. CI] Length = 310 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|229031550|ref|ZP_04187550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1271] gi|228729839|gb|EEL80819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1271] Length = 310 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTA 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|167636587|ref|ZP_02394881.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442] gi|170688833|ref|ZP_02880036.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465] gi|254683371|ref|ZP_05147231.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CNEVA-9066] gi|254743854|ref|ZP_05201537.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Kruger B] gi|167528010|gb|EDR90816.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442] gi|170667188|gb|EDT17948.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465] Length = 310 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPITPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|49186768|ref|YP_030020.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne] gi|49180695|gb|AAT56071.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne] Length = 310 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A D VN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDAVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|229117415|ref|ZP_04246791.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-3] gi|228666025|gb|EEL21491.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-3] Length = 310 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIELVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|253576122|ref|ZP_04853454.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14] gi|251844465|gb|EES72481.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14] Length = 324 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 170/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H+ VL E+ L P + +D T G GG+S G +IA D+D +A+ Sbjct: 1 MFHHITVLKEEATEGLRIKPDGIYVDCTLGGGGHSSVILSKLGPGGRLIAFDQDDWALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD----------KGVDGVVFDLGVSSMQIDCGDR 123 +E + Y ++ +L ++ F ++ + + VDGV+FDLGVSS Q D G+R Sbjct: 61 AKERLAAYADKLTLVKSNFRYIEQKLREIEGVPQLNGVPQVDGVLFDLGVSSPQFDEGER 120 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ PLDMRM S +A ++VN +++ RIL GEEK + IA I RR Sbjct: 121 GFSYNADAPLDMRMDQSAALTAREIVNTWPEREIARILFQYGEEKFSRWIAKVIADRRAQ 180 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT L LI++ + + + HPA RSFQALRI VN+E+ +GL +A + L Sbjct: 181 EPIETTGQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEEGLHAAIRCLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ FAS K + I +K +VP+++++ Sbjct: 241 EGRVSVITFHSLEDRICKQIFASYVEKCTCPPDFPMCVCGGKGSLKLINRKPIVPSEQEL 300 Query: 301 AFNRRSRSAKLRAGMR 316 A N R+RSAKLR + Sbjct: 301 ADNPRARSAKLRVAEK 316 >gi|150397291|ref|YP_001327758.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419] gi|150028806|gb|ABR60923.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419] Length = 362 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGKVILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 40 HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 99 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 100 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 159 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA I KRR APF+TT+DL++LI+ Sbjct: 160 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 219 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VVSFHSLEDR+VK Sbjct: 220 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 279 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V + E+ + N R+RSAKLRAG+RT Sbjct: 280 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 339 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 340 PSPGADLSIFNLPELASLARLGG 362 >gi|262831477|sp|A6UB93|RSMH_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 341 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGKVILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA I KRR APF+TT+DL++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VVSFHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V + E+ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341 >gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870] gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68] gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 6 str. 870] gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 9 str. C68] gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196] gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 6 str. 870] gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 9 str. C68] gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196] Length = 346 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGPVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|229174585|ref|ZP_04302115.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus MM3] gi|228608890|gb|EEK66182.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus MM3] Length = 310 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 338 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 162/322 (50%), Positives = 213/322 (66%), Gaps = 2/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L AP ++I+D TFGAGGY+ + + G++VI DRDP A++ G E Sbjct: 19 HIPVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGASVIGFDRDPEAIANGAEMAA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L A FS L ++V + +DG+V D+GVSSMQID +RGFSF + GPLDMRM+ Sbjct: 79 ASGGRLKLIHAQFSHLLEHVEEASLDGLVLDIGVSSMQIDEAERGFSFMRDGPLDMRMAQ 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +GISA+DVVN+A DLTRI GILGEE+ A RIA AI R PF TT+ L+ LI+K Sbjct: 139 AGISAADVVNRAKASDLTRIFGILGEERHAGRIARAIEAERAKHPFSTTRQLAGLIEKVS 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR +VN+E+ ELA L +AEKALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRRPQDKIHPATRVFQALRTYVNDELGELATALFAAEKALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF RSGK RH+ A F +I K+ VV +E+ N R+RSAKLRAG+R+ Sbjct: 259 RFFQDRSGKASGSRHLPAVQERKATFTAIGKQPVVAGEEECEANPRARSAKLRAGLRSDA 318 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + S + +P L G Sbjct: 319 PAGPTGS--DILPVPNLVALGG 338 >gi|319649673|ref|ZP_08003829.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2] gi|317398835|gb|EFV79517.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2] Length = 310 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H VLL++ + LN P V +D T G G+S + A D+D A++ Sbjct: 1 MFEHTTVLLKETVEGLNIHPDGVYVDCTLGGAGHSELILSQLSEKGKLYAFDQDDTAIAH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + +Y ++ ++ ++ F LQ+ + + VDGV++DLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLAEYGDRITIIKSNFKYLQEELANLGVSKVDGVLYDLGVSSPQLDTPERGFSYHND 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ISA DVVN+ +L +I GEEK + +IA I R+ +P +TT Sbjct: 121 APLDMRMDTGADISAYDVVNRWEYGELVKIFFRYGEEKFSKQIARKIEAAREVSPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + HPA R FQA+RI VN+E+ L A L G + V+ Sbjct: 181 QLVELIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEDSLHQAIDILNPNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + + + I +K ++P++E++ N R+R Sbjct: 241 TFHSLEDRICKAAFKKASETPNLPPGLPIIPDEYKPILKLINRKPILPSEEELEHNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|152976280|ref|YP_001375797.1| S-adenosyl-methyltransferase MraW [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|263446007|sp|A7GRP4|RSMH_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152025032|gb|ABS22802.1| S-adenosyl-methyltransferase MraW [Bacillus cytotoxicus NVH 391-98] Length = 310 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLLE+ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLEETVDGLDIKPNGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKDKFSSYGEQFIAVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R+ +TT Sbjct: 121 APLDMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYREKKKIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L +A + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEAAIEIVKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPELPPGLPIIPEEFKPKLKLITRKPILPSDVELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|304317210|ref|YP_003852355.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778712|gb|ADL69271.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 310 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 159/308 (51%), Gaps = 8/308 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL + I L P V +D T G GG+S + +IA+DRD A+ Sbjct: 1 MEFKHESVLLNETIEYLKVKPDGVYVDGTLGGGGHSYEILRRLPRGRLIAIDRDMDALYA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130 ++D+ + + +++ + + ++ + + DLGVSS Q+D RGFS+ Sbjct: 61 ASVRLKDFNN-VTYVHDNYKNIKNILKNIDIERIDGAILDLGVSSYQLDEVKRGFSYMHD 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A VVN + D+ RIL GEEK A RIA IV+ R+ +TT Sbjct: 120 APLDMRMDKGSALTAEHVVNNYSEDDIARILFDYGEEKWAKRIAKFIVEERKKRSIKTTF 179 Query: 190 DLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+K V SK HPA R+FQA+RI VN+E++ L + + G + ++ Sbjct: 180 QLVDIIKKAVPASKRRTGPHPAKRTFQAIRIEVNDELKGLDSAIDDFIDVMNPNGRIAII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDR+VK + +++ + V + ITKK V P +E++ N RSRS Sbjct: 240 TFHSLEDRIVKNMYKKLENPCTCPKNLPCTCGKKPVIKIITKKPVTPNKEELKTNPRSRS 299 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 300 AKLRVAEK 307 >gi|296133667|ref|YP_003640914.1| S-adenosyl-methyltransferase MraW [Thermincola sp. JR] gi|296032245|gb|ADG83013.1| S-adenosyl-methyltransferase MraW [Thermincola potens JR] Length = 319 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 175/315 (55%), Gaps = 9/315 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV+L++ I+ LN P + +D T G G+S K ++ +D+D A++ G++ Sbjct: 5 HVPVMLDESISHLNIKPDGIYVDCTLGGAGHSAEILKKIQPNGFLVGIDQDINAIAAGEK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++ + L + F++++D + + VDGV+FDLGVSS Q+D RGFS++ PL Sbjct: 65 RLKNIGSNYRLVHSNFNRIRDILEELGIYRVDGVLFDLGVSSYQLDQIQRGFSYKVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A +VN +L +I+ GEE+ A RIA IV+ R TT L Sbjct: 125 DMRMNPLEPVTARILVNGLTEDELAKIISEYGEERWARRIAKFIVEARAREEISTTGQLV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V + HPA R+FQALRI VN+E+ + LR A + L GG + V+SFH Sbjct: 185 EIIKNAVPAGARKEGPHPAKRTFQALRIAVNDELNKFKSALRDAIEVLAPGGRICVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+ K+ F + + + + + + IT K + P+ ++ N R+RSAK Sbjct: 245 SLEDRITKEMFRDLAKECVCPPEFPVCTCGTVPMLKIITNKPIEPSAAEIERNPRARSAK 304 Query: 311 LRAGMRTVERSIEDD 325 LR R V ++ E + Sbjct: 305 LRVAERLVLKNGEAE 319 >gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614] gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614] Length = 346 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 161/327 (49%), Positives = 222/327 (67%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL++V+ L P PG VI+D TFGAGGYSR+ ++G+ V+ +DRDP A++ GQE ++ Sbjct: 19 HVPVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGARVVGIDRDPDAIAGGQELVK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + L F+ L+ + G DGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 ASEGRLMLVPGQFADLETHARSCGFEGVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN+ VKDL R++G+LGEEK+A+ +AHAI K R+ PF T +L++LI+ Sbjct: 139 MEQAGPSAADVVNELPVKDLIRVIGLLGEEKRATTVAHAIDKARKEKPFTRTLELANLIE 198 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + K +IHPATR+FQALRI+VN E+ + A+ L +AE+ LK GG L++VSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAEALGAAERILKPGGRLVLVSFHSLED 258 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF R+ + RHM + PA F+ +T+K V + N R+RSAKLRAG Sbjct: 259 RIVKRFFQDRTRTRGGGSRHMPEEDVPPATFELLTRKAVEAASAETDINPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + E D +H +P L+ F G Sbjct: 319 RRTEAEARELD--IHQAGVPRLAAFHG 343 >gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1] gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1] gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M13/05/1] gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M644/93/1] gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M13/05/1] gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M644/93/1] Length = 346 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLTNAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|73748191|ref|YP_307430.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1] gi|147668966|ref|YP_001213784.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1] gi|289432241|ref|YP_003462114.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT] gi|88909198|sp|Q3ZZA4|RSMH_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446194|sp|A5FSB7|RSMH_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|73659907|emb|CAI82514.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1] gi|146269914|gb|ABQ16906.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1] gi|288945961|gb|ADC73658.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT] Length = 349 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 182/310 (58%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ Sbjct: 5 PHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPSAITLAA 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + L F+ L+D V G++FDLG+SSMQ+D + GFSFQ P Sbjct: 65 ERLKSFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDRQESGFSFQTEAP 124 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR S +A+D++N +V +L+ ++ GEE + RIA AI ++R PF+TT +L Sbjct: 125 LDMRFSPEQELTAADIINGYDVTELSDLIWKYGEEPFSRRIARAIAEKR---PFKTTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ I++ V ++ RIHPATR+FQALRI VN E+ L L A L GG L+V+S+H Sbjct: 182 AAAIERAVGG-RHGRIHPATRTFQALRIAVNEELSHLESALSQAHSLLGHGGRLVVISYH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK++F + + + H + I ++V+ P+ E+++ N RSRSAK Sbjct: 241 SLEDRIVKQYFQKEAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSRSAK 300 Query: 311 LRAGMRTVER 320 +R R +E Sbjct: 301 MRVAERIIEP 310 >gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445] gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445] Length = 346 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSGGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33] gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella neotomae 5K33] gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella neotomae 5K33] Length = 346 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 218/336 (64%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLILVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str. 16M] gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330] gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str. 9-941] gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar Abortus 2308] gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365] gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19] gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457] gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str. Tulya] gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str. 86/8/59] gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513] gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686] gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis M163/99/10] gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94] gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292] gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis M292/94/1] gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str. Rev.1] gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1] gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94] gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915] gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99] gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038] gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40] gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 4 str. 292] gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 2 str. 86/8/59] gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 3 str. Tulya] gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti B1/94] gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M163/99/10] gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis B2/94] gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 5 str. 513] gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 3 str. 686] gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. F5/99] gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M292/94/1] gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 1 str. Rev.1] gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M490/95/1] gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M] gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330] gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1 str. 9-941] gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus 2308] gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365] gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19] gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457] gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915] gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038] gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40] gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 4 str. 292] gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 2 str. 86/8/59] gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 3 str. Tulya] gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti B1/94] gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis B2/94] gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M163/99/10] gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. F5/99] gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 5 str. 513] gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 3 str. 686] gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M490/95/1] gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 1 str. Rev.1] gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M292/94/1] Length = 346 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|23098917|ref|NP_692383.1| hypothetical protein OB1462 [Oceanobacillus iheyensis HTE831] gi|22777145|dbj|BAC13418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 329 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 9/316 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + + +H VL E+ I L P + +D T G GG+S + A D+D Sbjct: 1 MGVEMFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A++ ++ + Y ++ Q+ F L++ + VDG++FDLGVSS Q+D GDRGFS Sbjct: 61 ALAAARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFS 120 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + LDMRM S SA +VVN+ + + L I GEEK + +IA I R+ Sbjct: 121 YNHDALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDI 180 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ + + HPA R FQALRI VN+E+E L A + + G Sbjct: 181 KTTHQLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHSLEDR+ K+ F S RH+ +H A F+ +T+K + ++ N Sbjct: 241 IAVITFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDEN 300 Query: 304 RRSRSAKLRAGMRTVE 319 RRSRSAKLR + E Sbjct: 301 RRSRSAKLRVIEKVSE 316 >gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A] gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A] gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28] gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90] Length = 347 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 9 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 68 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 69 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 128 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 129 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 188 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 189 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 248 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 249 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 308 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 309 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|160933348|ref|ZP_02080736.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753] gi|156867225|gb|EDO60597.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753] Length = 308 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 119/304 (39%), Positives = 172/304 (56%), Gaps = 7/304 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H+PVLL + I L P V +D T G GG+S + K +IA+D+DP A++ + Sbjct: 4 YHLPVLLRETIEGLAVKPDGVYVDGTAGGGGHSEAIAKRLSTGRLIAIDQDPDAIAAVTK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ +A FSQ+++ V VDGV+ D+GVSS Q+D +RGFS+ PL Sbjct: 64 RLADYPG-VTVCRANFSQMEEVVRSLGVDSVDGVLMDIGVSSHQLDTPERGFSYHSDAPL 122 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G A D+VN ++L IL GEE+ + RIA I R+ AP +TT L+ Sbjct: 123 DMRMSQEGPGAGDLVNSLPWQELAEILSRYGEERFSKRIAQGIAAAREQAPIETTFQLAE 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ + HPA ++FQALRI VN E++ L++GL +A LK GG L V++FHSL Sbjct: 183 IVKNAYPAAARRDGHPARKTFQALRIAVNGELDRLSEGLDAAFSLLKPGGRLAVITFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ AS + +T+K V ++ ++ N RSRSAKLR Sbjct: 243 EDRLVKRRMASWCQGCTCPPDFPVCVCGKTPSAELVTRKPVKASETELEKNPRSRSAKLR 302 Query: 313 AGMR 316 +R Sbjct: 303 VCIR 306 >gi|163941658|ref|YP_001646542.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis KBAB4] gi|229061524|ref|ZP_04198868.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH603] gi|229168659|ref|ZP_04296381.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH621] gi|263447259|sp|A9VU80|RSMH_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163863855|gb|ABY44914.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis KBAB4] gi|228614815|gb|EEK71918.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH621] gi|228717758|gb|EEL69408.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH603] Length = 310 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026] gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026] Length = 346 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 167/336 (49%), Positives = 217/336 (64%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAPKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIH ATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHSATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|33301401|sp|Q8ER53|RSMH_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 325 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 163/312 (52%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VL E+ I L P + +D T G GG+S + A D+D A++ Sbjct: 1 MFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y ++ Q+ F L++ + VDG++FDLGVSS Q+D GDRGFS+ Sbjct: 61 ARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S SA +VVN+ + + L I GEEK + +IA I R+ +TT Sbjct: 121 ALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTH 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + + HPA R FQALRI VN+E+E L A + + G + V+ Sbjct: 181 QLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S RH+ +H A F+ +T+K + ++ NRRSR Sbjct: 241 TFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 301 SAKLRVIEKVSE 312 >gi|258514333|ref|YP_003190555.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM 771] gi|257778038|gb|ACV61932.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM 771] Length = 311 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 172/306 (56%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PV+L +VI LN PG + +D T G G+S + + +I LD+DP A++ E Sbjct: 5 HKPVMLAEVIDGLNIRPGGIYVDCTLGGAGHSSAIAQKLDGRGLLIGLDQDPEALAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y FS++ + + VDG+++DLGVSS Q+D RGFS+ PL Sbjct: 65 RLAVYGALVKTVGRNFSEIASVLSSLNIESVDGILYDLGVSSYQLDNPSRGFSYMHEAPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ GI+A D+VN + + L I+ GEE+ ASRIA I++ R+ TT L Sbjct: 125 DMRMNPQSGITAGDLVNSLSQEKLAEIIQSYGEERWASRIAGFIIEERRHKNICTTGQLV 184 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ + HPA R+FQALRI VN E+E L Q LR K L+ GG + V++FH Sbjct: 185 QIIKKAIPAGARRDGPHPAKRTFQALRIAVNRELEILQQALRDGIKFLRTGGRICVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ F S + + + + IT K +VPT+ ++ N R+RSAK Sbjct: 245 SLEDRLVKEVFKSVAKGCICPPRLPVCLCGKQKELKIITGKPLVPTETELKDNPRARSAK 304 Query: 311 LRAGMR 316 LR R Sbjct: 305 LRIAER 310 >gi|251797883|ref|YP_003012614.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2] gi|262824736|sp|C6D563|RSMH_PAESJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247545509|gb|ACT02528.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2] Length = 316 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 173/315 (54%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VLLE+ + L PG + +D T G G+S G +IA D+D A+ Sbjct: 1 MFQHITVLLEEAVDGLAIKPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---------VVFDLGVSSMQIDCGDRG 124 + + Y ++ +L ++ F L++ + V ++FDLGVSS Q+D +RG Sbjct: 61 ARVRLAPYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM G +A D+VN ++++RIL + GEEK A IA IV+ R++A Sbjct: 121 FSYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIVQARENA 180 Query: 184 PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L+ L++ + ++ HPA RSFQALRI VN+E+ L A K ++ G Sbjct: 181 PIETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K+ FAS K + + +K +VPT++++ Sbjct: 241 GRISVITFHSLEDRICKQLFASYVEKCTCPPDFPKCVCGGTGKLRLVNRKPIVPTEQELE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 301 VNPRSRSAKLRVAEK 315 >gi|222086453|ref|YP_002544986.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter K84] gi|263446643|sp|B9JH59|RSMH_AGRRK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221723901|gb|ACM27057.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter K84] Length = 341 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 179/323 (55%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+ L PAPGK+ILD TFGAGGY+ + G+++IALDRDP A++ GQ + Sbjct: 19 HIPVLLKEVLEALAPAPGKLILDGTFGAGGYTSAILAAGADMIALDRDPTAIAAGQSMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + +L Q+ FSQL D+ P G+DGVV D+GVSSMQ+D +RGFSF K+GPLDMRMS Sbjct: 79 AHAGRLTLIQSQFSQLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFSKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN A + DL RI LGEEKQA RIAHAI KRR APF TT+DL+ LI+ Sbjct: 139 SGVSAADVVNHAKLADLIRIFVFLGEEKQAPRIAHAIEKRRAEAPFVTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFFA RSG+ RHM + A F I K ++ + + N R+RSAKLRAG+RT Sbjct: 259 KFFADRSGRAGGSRHMPMVHERLATFDPIGKPMISASDAEAEINPRARSAKLRAGLRTSV 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 ++ D S LP L +L + G Sbjct: 319 QAEAADLSIFDLPNLASLGKLGG 341 >gi|170759536|ref|YP_001786877.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str. Loch Maree] gi|263446098|sp|B1L164|RSMH_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169406525|gb|ACA54936.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA +VVN ++L RI GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENFSAYNVVNSYEEEELFRIFKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|150390647|ref|YP_001320696.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] gi|263433264|sp|A6TS69|RSMH1_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|149950509|gb|ABR49037.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] Length = 311 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 171/311 (54%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 +H VLL++ I L+ + +D T G G+S+ K+ +I +D+D A+S Sbjct: 1 MNFEHTSVLLKECIEALDIKENGIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALS 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++ + L F L + + +DGV+ DLGVSS Q+D +RGFS+ + Sbjct: 61 AAGERLEEHGTKVKLVHDNFHNLDKILENLEITTIDGVLLDLGVSSHQLDERERGFSYMQ 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G SA D+VN + K+L RI+ GE++ A RIA IV+ R+ AP +TT Sbjct: 121 DAPLDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQERELAPIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + +I+K V + + HPA R+FQA+RI VN E+E + + +A K +K GG + + Sbjct: 181 HQMVEVIKKAVPKGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAAKHMKPGGRIAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + + + +T+K ++P++ ++ N RS Sbjct: 241 ISFHSLEDRIVKNVFRRLQNPCVCPPQFPVCKCEKEQMVKIVTRKPILPSEAELEVNPRS 300 Query: 307 RSAKLRAGMRT 317 RSAKLR R Sbjct: 301 RSAKLRVAERV 311 >gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC 49188] gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC 49188] Length = 347 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 165/336 (49%), Positives = 216/336 (64%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L P G VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 9 NSQAEGAEVRHVPVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPT 68 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRG 124 A+ G+ + + + L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 69 AIEAGRAMEKQFPGRLDLVESRFSALDEAVSKVKGAGSKVDGVVLDIGVSSMQIDEAERG 128 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+DVVN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 129 FSFQKDGPLDMRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQP 188 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 189 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 248 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK++FA R+G RH+ ++ F K V PT E+ N Sbjct: 249 LVVVTFHSLEDRMVKRYFADRAGGSAGSRHLPETHVRLPSFTPAVKGAVGPTAEEEERNP 308 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 309 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|226313432|ref|YP_002773326.1| S-adenosyl-methyltransferase MraW [Brevibacillus brevis NBRC 100599] gi|263445821|sp|C0ZGB3|RSMH_BREBN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226096380|dbj|BAH44822.1| S-adenosyl-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 188/313 (60%), Gaps = 9/313 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + HV VL+++ + LN PG + +D T G G+S G +IA+D+D + Sbjct: 1 MTTLSFHHVTVLMDEAVQGLNIRPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAIDQDDW 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ +E + Y ++ +L ++ F ++D V D GVDGV+FDLGVSS Q+D G+RGFS Sbjct: 61 ALDNARERLASYMDRVTLVKSNFRHIKDIVKDLGLSGVDGVLFDLGVSSPQLDEGERGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM +SA D++N+ + +++ +I+ + GEEK + RIA IV++R+ P Sbjct: 121 YNADAPLDMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQRKKQPI 180 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 QTT +L LI++ + + + HPA R+FQA+RI VN+E++ + + A + L G Sbjct: 181 QTTGELVELIKEGIPAAARRTGPHPAKRTFQAIRIAVNDELDAFKEAVVDAIEVLNPEGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHSLEDR+ K+ + S I + + AV + IT+K ++P++E++ N Sbjct: 241 VSVITFHSLEDRICKQIYQDFSKGCTCPPAFPICTCGNKAVVKVITRKPILPSEEELEAN 300 Query: 304 RRSRSAKLRAGMR 316 +R+RSAKLR + Sbjct: 301 KRARSAKLRVAEK 313 >gi|253699149|ref|YP_003020338.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21] gi|263455964|sp|C6DZJ8|RSMH_GEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|251773999|gb|ACT16580.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21] Length = 312 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VL ++V+ L+P G V +D T G G++ +I DRD A++ ++ Sbjct: 6 HISVLPDEVLQALSPKSGGVYVDGTLGGAGHAGLILTASAPEGRLIGFDRDEEAIAVARQ 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + F+ + + + G+DG V DLGVSS Q+D +RGFSF PL Sbjct: 66 RLSVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G SA+D+VN +L RI+ GEE+ A R+A IVK R P +TT +L Sbjct: 126 DMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKARDERPIETTLELV 185 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + +K R+HPATR+FQALRI VN E++ L +GL+ LK GG V+SFH Sbjct: 186 DVIKGAIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLLSLLKQGGRGAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + I F+ +T+K + + +VA N RSRSAK Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICVCGRVPRFKLVTRKPITAGESEVAANPRSRSAK 305 Query: 311 LRAGMRT 317 LR + Sbjct: 306 LRVVEKI 312 >gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium KLH11] gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium KLH11] Length = 330 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 151/328 (46%), Positives = 201/328 (61%), Gaps = 6/328 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+ A + H+PVLL ++A + P V LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MAGAQTSSDKPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYTRGLLEAGAEKVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y ++ + Q FS + +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAADWAGGYGDRLVMQQGVFSCMDEYARD--LDGVVLDLGVSSMQLDQAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+VN+A L IL GEE+ + RIA AIV+ R P T Sbjct: 118 MKDGPLDMRMSQQGDSAADLVNEATEAQLADILFHYGEERASRRIARAIVRARAEDPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQ LRI VN E EEL QGL +AE+ALK GG L V Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFQGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF SR+GK A R+ F T+K V P +++ N R+ Sbjct: 238 VTFHSIEDRMVKRFFQSRAGKTGRANRYAPEMAQEQPQFTLKTRKAVGPDDQELEENPRA 297 Query: 307 RSAKLRAGMRTVERSIEDDS-FVHLPRL 333 RSAKLR +RT + E ++ + +P+L Sbjct: 298 RSAKLRVAVRTDAPAGEIEARAIGMPQL 325 >gi|308173479|ref|YP_003920184.1| S-adenosyl-dependent methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307606343|emb|CBI42714.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus amyloliquefaciens DSM 7] gi|328553591|gb|AEB24083.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus amyloliquefaciens TA208] gi|328911615|gb|AEB63211.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus amyloliquefaciens LL3] Length = 311 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++T+ +YK Q L ++ F L++ + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKQTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +A +VVN+ +DL RI GEEK + +IA I + R+ +P QTT Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + IT+K + ++E++ N R+R Sbjct: 241 TFHSLEDRMCKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|28211297|ref|NP_782241.1| S-adenosyl-methyltransferase MraW [Clostridium tetani E88] gi|42559471|sp|Q894B4|RSMH_CLOTE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28203737|gb|AAO36178.1| S-adenosyl-methyltransferase mraW [Clostridium tetani E88] Length = 310 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLL++ I LN + +D T G G+S K +I +D+D A+ Sbjct: 1 MEFKHISVLLDECIEGLNIKENGIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +++Y+ + F ++D + + VDG++ DLGVSS Q+D RGFS+ + Sbjct: 61 AASEKLKEYENVL-YKHSNFYHIKDILEELEVGKVDGILMDLGVSSYQLDEKSRGFSYMQ 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + PLDMRM+ A +VVN + L RI+ GEE+ A RI++ IV+ R++ +TT Sbjct: 120 NAPLDMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESRENKKIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + + HPA R+FQA+RI VN E+E L + + + K+LK+GG + + Sbjct: 180 GELVDIIKRAIPAKFRREGPHPAKRTFQAIRIEVNGELEILNKAIEDSVKSLKSGGRIAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + + IT+K + P++E+V N RS Sbjct: 240 ITFHSLEDRIVKNKFKELEDPCICPKDFPICTCGKEPLVKIITRKPIDPSKEEVEINPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIAEK 309 >gi|332654098|ref|ZP_08419842.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16] gi|332517184|gb|EGJ46789.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16] Length = 327 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 8/314 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72 H PVLL++ I LN P + LD T G G+SR + +I +DRD A+ Sbjct: 2 SETFTHRPVLLDECIEALNIRPDGIYLDGTLGRAGHSREIARRLTTGRLICVDRDQAALD 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q+ ++D+ ++ +L + F QL + GVDG++FDLGVSS Q+D G RGFS+ Sbjct: 62 AAQDRLKDWMDRVTLVHSNFDQLDAILDRLGLAGVDGMLFDLGVSSPQLDDGSRGFSYMA 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G++A+DVVNQ + ++L RIL GEE+ A IA AIV+RRQ P +TT Sbjct: 122 DAPLDMRMDRSEGLTAADVVNQWSQEELRRILSQYGEERYAPSIAAAIVRRRQDKPIETT 181 Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA RSFQA+RI VN+E+ + + +R+A L GG L V Sbjct: 182 LELVDIIKSAMPARALKEKQHPAKRSFQAIRIAVNDELASVDRMVRAAIPRLNKGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK A + + +K ++P++ +V N R+ Sbjct: 242 ITFHSLEDRIVKTDLAEFAKGCTCPPDFPVCVCGKTPDVKLTPRKPILPSEREVEENPRA 301 Query: 307 RSAKLRAGMRTVER 320 RSAKLR + + Sbjct: 302 RSAKLRVAEKLKDP 315 >gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str. Ether] gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 3 str. Ether] gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 3 str. Ether] Length = 346 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENAPLEDDLSLFGLPKLPETNEL 343 >gi|168180112|ref|ZP_02614776.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916] gi|182668973|gb|EDT80949.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916] Length = 309 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENFSAYNVVNNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|27381721|ref|NP_773250.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium japonicum USDA 110] gi|27354890|dbj|BAC51875.1| S-adenosyl-methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 387 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 150/325 (46%), Positives = 200/325 (61%), Gaps = 5/325 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 + H+PVL + I L P G + +DATFGAGGYSR+ G+ +IA+DRD A++ G Sbjct: 60 SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 119 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131 E + + +L + FS L D +GVD V + SSMQ+D RGFSF+ G Sbjct: 120 AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 179 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM +G +A+DVV +A+ DL I+ +LGEE+ + R+A AIV RQ PF TT+ L Sbjct: 180 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 239 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V K IHPATR+FQALRIFVN E+EEL L +AE+ LK GG L+VVSFH Sbjct: 240 ADLVGRVVRS-KPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 298 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F A RS RH+ FQ +T++ VV +++VA N R+RSAKL Sbjct: 299 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 358 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTL 336 RA RT + +DD PRL + Sbjct: 359 RAAERTSAPAHKDDQSSSWPRLSDV 383 >gi|42558979|sp|Q89FT9|RSMH_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 329 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 150/325 (46%), Positives = 200/325 (61%), Gaps = 5/325 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 + H+PVL + I L P G + +DATFGAGGYSR+ G+ +IA+DRD A++ G Sbjct: 2 SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131 E + + +L + FS L D +GVD V + SSMQ+D RGFSF+ G Sbjct: 62 AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM +G +A+DVV +A+ DL I+ +LGEE+ + R+A AIV RQ PF TT+ L Sbjct: 122 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V K IHPATR+FQALRIFVN E+EEL L +AE+ LK GG L+VVSFH Sbjct: 182 ADLVGRVVRS-KPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F A RS RH+ FQ +T++ VV +++VA N R+RSAKL Sbjct: 241 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 300 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTL 336 RA RT + +DD PRL + Sbjct: 301 RAAERTSAPAHKDDQSSSWPRLSDV 325 >gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840] gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840] Length = 346 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGSSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENSPLEDDLSLFGLPKLPETNEL 343 >gi|226948790|ref|YP_002803881.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str. Kyoto] gi|263446084|sp|C1FME6|RSMH_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226843346|gb|ACO86012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENLSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|148379426|ref|YP_001253967.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 3502] gi|153932097|ref|YP_001383805.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 19397] gi|153935599|ref|YP_001387355.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. Hall] gi|263446050|sp|A7FTX8|RSMH_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446073|sp|A5I1T3|RSMH_CLOBH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148288910|emb|CAL82997.1| S-adenosyl-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928141|gb|ABS33641.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 19397] gi|152931513|gb|ABS37012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. Hall] Length = 309 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA V+N ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|154685933|ref|YP_001421094.1| S-adenosyl-methyltransferase MraW [Bacillus amyloliquefaciens FZB42] gi|263446791|sp|A7Z4D7|RSMH_BACA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154351784|gb|ABS73863.1| YlxA [Bacillus amyloliquefaciens FZB42] Length = 311 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++T+ +YK Q L ++ F L++ + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKKTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +A +VVN+ +DL RI GEEK + +IA I + R+ +P QTT Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + IT+K + ++E++ N R+R Sbjct: 241 TFHSLEDRMCKMTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|15895401|ref|NP_348750.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum ATCC 824] gi|20139082|sp|Q97H81|RSMH_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15025123|gb|AAK80090.1|AE007714_3 Predicted S-adenosylmethionine-dependent methyltransferase, involved in cell envelope biogenesis YLXA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509547|gb|ADZ21183.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum EA 2018] Length = 312 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ Sbjct: 1 MEFNHVPVLLEETIENLNIKEDGIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +++YK + FS +++ + + VDG++ DLGVSS Q+D +RGFS+ Sbjct: 61 AASERLKEYKN-LTFVHDNFSNIKNILEELKIDKVDGILADLGVSSYQLDEPERGFSYMN 119 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA DV+N + + L I+ GEEK A RIA IV++R TT Sbjct: 120 DAPLDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFIVEKRSEEAINTT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA R+FQA+RI VN E+E L + + + LK+ G + + Sbjct: 180 FELVDIIKAAIPAKFRRQGPHPAKRTFQAIRIEVNQELEILNKTIEDSVDKLKSEGRICI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + M + + + IT+K + + ++ +N RS Sbjct: 240 ITFHSLEDRIVKNKYRELQDPCMCPKDIPMCVCGKKPKIKIITRKPIEASSYELEYNPRS 299 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 300 RSAKLRVAEKIN 311 >gi|168182383|ref|ZP_02617047.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf] gi|237794792|ref|YP_002862344.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str. 657] gi|263446362|sp|C3KV90|RSMH_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182674378|gb|EDT86339.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf] gi|229262949|gb|ACQ53982.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKERLKDYENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA V+N ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENLSAYGVINNYKEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|168186149|ref|ZP_02620784.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str. Eklund] gi|169295776|gb|EDS77909.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str. Eklund] Length = 309 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 161/310 (51%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ Sbjct: 1 MNFNHVPVLLEETIDSLNIKKDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++ Y+ + F L + + + VDG++ DLGVSS Q+D +RGFS+ Sbjct: 61 AAKNRLKGYEN-ITYVHNNFYNLAGILDELNVEKVDGILMDLGVSSYQLDTPERGFSYMN 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM+ GISA DVVN + DL RI+ GEE+ A +IA AIVK R P +TT Sbjct: 120 DAMLDMRMNTESGISAYDVVNGYSEDDLFRIIKNYGEERFARKIARAIVKERNEKPIETT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + HPA ++FQA+RI VN+E+E L + + L G + V+ Sbjct: 180 LQLVKIIRNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNKDGRISVI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR++K F + + + IT+K + P++ + N RSR Sbjct: 240 TFHSLEDRIIKTKFKELENPCTCPKEFPICVCGKKPIVKVITRKPIEPSEVERENNSRSR 299 Query: 308 SAKLRAGMRT 317 S+KLR + Sbjct: 300 SSKLRVAQKI 309 >gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13] gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. 83/13] gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653] gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. 83/13] gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653] Length = 346 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 166/336 (49%), Positives = 219/336 (65%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ ++I L PAPG VI+D TFGAGGY+R + G++VIA+DRDP Sbjct: 8 NSQAEGAEVRHVPVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGASAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVVVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|158320404|ref|YP_001512911.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs] gi|263446681|sp|A8MH28|RSMH_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158140603|gb|ABW18915.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs] Length = 311 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 168/308 (54%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLLE+ I LN + +D T G G+S K S+ +I +D+D A+ Sbjct: 4 KHVSVLLEECIENLNIKENGIYVDGTLGGAGHSSEIAKRLSDKGLLIGIDQDENAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + KE+ L + FS + + + G+DG++ DLGVSS Q+D DRGFS+ P Sbjct: 64 EKLTPMKERIKLVRDNFSNIDAILQNLEIDGIDGILLDLGVSSHQLDEADRGFSYMHDAP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA +VVN KDL I+ GEEK A RIA+ IV R+ P TT L Sbjct: 124 LDMRMDTRQAVSAMEVVNSYTEKDLENIIKNYGEEKWAKRIANFIVDFRKEEPITTTHQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + + + HPA R+FQA+RI VN E+E + + + A + L GG + +++F Sbjct: 184 VDVIKRAIPKGARIDGPHPAKRTFQAIRIEVNGELEIINKTIDDAVRNLNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F S + + IT+K +VPT+E++ N R+RSA Sbjct: 244 HSLEDRIVKNAFRDLSNPCICPPEFPICRCDRKPAVKIITRKPIVPTEEELELNPRARSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRVAEKI 311 >gi|327441162|dbj|BAK17527.1| predicted S-adenosylmethionine-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 316 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 167/313 (53%), Gaps = 9/313 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P + +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNINPDGIYVDCTLGGAGHSEYLVQQLSEKGRLICFDQDTTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + F L++ + +DG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKVRLADYLDRVIFVHSNFRYLKEELHKLNIHQIDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +SA VVN+ + ++L RI GEEK + ++A I + R+ AP +TT Sbjct: 121 APLDMRMDQTAELSAYHVVNEWSYENLVRIFFRYGEEKFSKQVARKIEQAREIAPVETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA R FQA+RI VN+E+ L A LK GG + V+ Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDLLKIGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S + H + + +++K ++P+ E++A N RSR Sbjct: 241 TFHSLEDRLTKTLFKEASSLPDLPPGLPVIPEHMKPILKLVSRKPILPSDEELAANNRSR 300 Query: 308 SAKLRAGMRTVER 320 SAKLR + ++ Sbjct: 301 SAKLRIAEKINDK 313 >gi|16078578|ref|NP_389397.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. 168] gi|221309385|ref|ZP_03591232.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. 168] gi|221313712|ref|ZP_03595517.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318634|ref|ZP_03599928.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. JH642] gi|221322908|ref|ZP_03604202.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. SMY] gi|1730600|sp|Q07876|RSMH_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1122760|emb|CAA92525.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|2633885|emb|CAB13387.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. subtilis str. 168] Length = 311 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++Y+ ++ VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLSDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S SA +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|118444716|ref|YP_878007.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT] gi|263446115|sp|A0Q055|RSMH_CLONN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118135172|gb|ABK62216.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT] Length = 309 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 164/310 (52%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ Sbjct: 1 MNFNHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++DY+ + F L + + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 61 AAKERLKDYEN-VTYVHNNFYNLASILDELNVDKVDGILMDLGVSSYQLDTPERGFSYMK 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM+ +GISA DVVN + DL RI+ GEE+ + +IA AIVK R P +TT Sbjct: 120 DAMLDMRMNTENGISAYDVVNGYSEDDLFRIIKDYGEERFSRKIAKAIVKERNEKPVETT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + HPA ++FQA+RI VN+E+E L + + L G + V+ Sbjct: 180 LELVKIIKDVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNPNGRISVI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR++K F + V + +T+K + P + + N RSR Sbjct: 240 TFHSLEDRIIKTKFKELENPCTCPKEFPICVCGKKPVVKVVTRKPIEPNEFERENNSRSR 299 Query: 308 SAKLRAGMRT 317 S+KLR + Sbjct: 300 SSKLRVAQKI 309 >gi|262831532|sp|Q133W3|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 147/328 (44%), Positives = 197/328 (60%), Gaps = 5/328 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71 + + H+PVL + + LL P G V +D TFGAGGY+R + + VIA+DRD A+ Sbjct: 1 MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + ++ + +L + FS L D + VDGVV D+GVSSMQ+D DRGFSF+ Sbjct: 61 ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+DVV A+ DL I+ I GEEK + +A AI+ R+ AP TT Sbjct: 121 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ TV SK +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIV-ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F RS RH+ F +TK+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336 AKLR RT + D P L ++ Sbjct: 300 AKLRGAERTAAPAHRPDDLPGWPTLASV 327 >gi|257867494|ref|ZP_05647147.1| methyltransferase [Enterococcus casseliflavus EC30] gi|257873823|ref|ZP_05653476.1| methyltransferase [Enterococcus casseliflavus EC10] gi|257877573|ref|ZP_05657226.1| methyltransferase [Enterococcus casseliflavus EC20] gi|257801550|gb|EEV30480.1| methyltransferase [Enterococcus casseliflavus EC30] gi|257807987|gb|EEV36809.1| methyltransferase [Enterococcus casseliflavus EC10] gi|257811739|gb|EEV40559.1| methyltransferase [Enterococcus casseliflavus EC20] Length = 319 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H V+L++ + L P V +D T G G+S ++ A D+D A+ +E Sbjct: 6 HYTVMLQETVDGLKIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTAIDHAKE 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + ++ F L++ + VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 66 RLAPYVAKGMVTFIKSNFRYLKEALHQHGVSRVDGILYDLGVSSPQLDEAERGFSYHQDA 125 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A +VVNQ + L +I GEEK + +IA I + RQ P +TT + Sbjct: 126 PLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHPIETTGE 185 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + + HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 186 LVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEESLEQAIHLLAVNGRVSVIT 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + IT+K ++PT+E+VA N RSRS Sbjct: 246 FHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLITRKPLLPTEEEVAENNRSRS 305 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 306 AKLRIAEKIKE 316 >gi|91977868|ref|YP_570527.1| methyltransferase [Rhodopseudomonas palustris BisB5] gi|91684324|gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5] Length = 398 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 147/328 (44%), Positives = 197/328 (60%), Gaps = 5/328 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71 + + H+PVL + + LL P G V +D TFGAGGY+R + + VIA+DRD A+ Sbjct: 67 MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 126 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + ++ + +L + FS L D + VDGVV D+GVSSMQ+D DRGFSF+ Sbjct: 127 ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 186 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+DVV A+ DL I+ I GEEK + +A AI+ R+ AP TT Sbjct: 187 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 246 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ TV SK +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 247 KALADIV-ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 305 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F RS RH+ F +TK+ +V +VA N R+RS Sbjct: 306 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 365 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336 AKLR RT + D P L ++ Sbjct: 366 AKLRGAERTAAPAHRPDDLPGWPTLASV 393 >gi|239826514|ref|YP_002949138.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70] gi|263455972|sp|C5D8L5|RSMH_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239806807|gb|ACS23872.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70] Length = 310 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + L+ P + +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLHIKPDGIYVDCTLGGGGHSEYLLSQLSEDGRLFAFDQDDMAIEY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y++Q + + F L + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKKRLARYEKQVTFIRRNFRFLAEELTARGVHRVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ ++A D+VN ++L I GEEK + ++A I + R+ +TT Sbjct: 121 APLDMRMNREQSLTAYDIVNHWPYEELVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ + HPA R FQA+RI VN+E++ + + A LK+GG + V+ Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFKEAITQAIDLLKSGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + + ITKK +VP++E++ N R+R Sbjct: 241 TFHSLEDRICKVAFKEASQGPQLPPGLPLIPDQYRPALKIITKKPIVPSEEEIEHNHRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|254456040|ref|ZP_05069469.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp. HTCC7211] gi|207083042|gb|EDZ60468.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp. HTCC7211] Length = 336 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 118/335 (35%), Positives = 182/335 (54%), Gaps = 5/335 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 M + I + H PVLL+++I++ +P G +D TFG GGYS+ +++IALDRD Sbjct: 1 MEATIVSELQKHYPVLLKEIISVFSPQHGGTFIDCTFGQGGYSKKILDFENTSIIALDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + +++++F FSQL + ++ + GV+FDLG S QI +G S Sbjct: 61 VESEKIANKFKENFEDRFIFKNIKFSQLNNLKLKNENIRGVIFDLGYSYTQIKDPLKGLS 120 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ G L+M++ + SA D +N+ + K+L +I G+EK+ IA I+K R Sbjct: 121 FEADGKLNMQLGLNSYSAEDAINKLDEKELEKIFKFFGDEKEGKYIARNIIKERLKNKID 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + + + KN ++H AT+ FQALRIFVN EI EL GL +A K LK GG+L Sbjct: 181 TRALVEIIDKSKKR--KNFKVHNATKVFQALRIFVNKEISELIYGLINATKVLKKGGILG 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLED++VK FF S S R+ + +F I KK ++P+ E+V+ N S Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRYSPVTEQSETLFNLIQKKPILPSDEEVSENPPS 298 Query: 307 RSAKLRAGMRTVERSIEDDSFVH-LPRLPTLSQFR 340 RSAK R ++ + D + L + + Sbjct: 299 RSAKFRYVIKKSDFYNFDTDVENQFRNLIEIENYG 333 >gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1] gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1] Length = 346 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 165/336 (49%), Positives = 218/336 (64%), Gaps = 6/336 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +S HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+D DP Sbjct: 8 NSQAEGAEVRHVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDCDPT 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ G+ +++ + +L ++ FS L + V VDGVV D+GVSSMQID +RG Sbjct: 68 AIEAGRAMEKEFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + P Sbjct: 128 FSFQKDGPLDMRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL++ I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG Sbjct: 188 FTRTLDLANAIETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L++V+FHSLEDR+VK+FFA R+G RHM ++ F K V PT E+ N Sbjct: 248 LVIVTFHSLEDRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNP 307 Query: 305 RSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQF 339 R+RSAKLRAG+RT +EDD S LP+LP ++ Sbjct: 308 RARSAKLRAGIRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|325571379|ref|ZP_08146879.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus casseliflavus ATCC 12755] gi|325155855|gb|EGC68051.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus casseliflavus ATCC 12755] Length = 331 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 165/317 (52%), Gaps = 11/317 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 H H V+L++ + L+ P V +D T G G+S ++ A D+D A Sbjct: 12 HMADFQHYTVMLQETVDGLSIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTA 71 Query: 71 VSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125 + +E + Y K + ++ F L++ + VDG+++DLGVSS Q+D +RGF Sbjct: 72 IDHAKERLAPYVAKGMVTFIKSNFRYLKEALNQHGVSRVDGILYDLGVSSPQLDEAERGF 131 Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ + PLDMRM + +A +VVNQ + L +I GEEK + +IA I + RQ P Sbjct: 132 SYHQDAPLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHP 191 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I+ + + HPA R FQA+RI VN+E+ + L A L G Sbjct: 192 IETTGELVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEDSLEQAIHLLAVNG 251 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302 + V++FHSLEDR+VK F S + + IT+K ++PT+E+VA Sbjct: 252 RVSVITFHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLITRKPLLPTEEEVAE 311 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR + E Sbjct: 312 NNRSRSAKLRIAEKIKE 328 >gi|169827004|ref|YP_001697162.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus sphaericus C3-41] gi|263456365|sp|B1HPY0|RSMH_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168991492|gb|ACA39032.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus sphaericus C3-41] Length = 316 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 168/316 (53%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P V +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y E+ + + F L++ + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +A +VVNQ +DL RI GEEK + ++A I + R+SAP +TT Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V+ Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S ++ + + IT+K +VP+ E++ N R+R Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIVPSDEELEVNNRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ E Sbjct: 301 SAKLRVVEKINDKGRE 316 >gi|153938691|ref|YP_001390802.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. Langeland] gi|263446093|sp|A7GDE2|RSMH_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152934587|gb|ABS40085.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. Langeland] gi|295318872|gb|ADF99249.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. 230613] Length = 309 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKEKLKDYENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|229104481|ref|ZP_04235148.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-28] gi|228678923|gb|EEL33133.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-28] Length = 310 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPPLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|299534665|ref|ZP_07047997.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus fusiformis ZC1] gi|298730038|gb|EFI70581.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus fusiformis ZC1] Length = 316 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P V +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y E+ + + F L++ K VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKIRLAPYIERVTFIHSNFRYLKEELLAHGIKQVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +ASDVVNQ +DL RI GEEK + ++A I + R+ AP +TT Sbjct: 121 APLDMRMDQTATLTASDVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKIAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V+ Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S ++ + + IT+K ++P+ E++A N R+R Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIIPSDEELAVNNRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ E Sbjct: 301 SAKLRVVEKINDKGRE 316 >gi|167751501|ref|ZP_02423628.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702] gi|167655309|gb|EDR99438.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702] Length = 308 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 172/306 (56%), Gaps = 4/306 (1%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV Sbjct: 2 SEKPIHIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVK 61 Query: 73 CGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E ++DY + +TF + D + VDGV+ DLGVSS Q+D +RGFS+ + Sbjct: 62 AAEEKLKDYPHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDA 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L Sbjct: 122 PLDMRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V +P ++FQA+RI VN E++EL +G+ A + L GG L +++FH Sbjct: 182 AEIVKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSQGGRLAIITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 S+EDR+VK F +++ +K V ++E++A N RSRSAK Sbjct: 242 SIEDRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAK 301 Query: 311 LRAGMR 316 LR + Sbjct: 302 LRVIEK 307 >gi|205373089|ref|ZP_03225894.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4] Length = 311 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +H VLL + + L P + +D T G G+S G ++ A D+D A+ Sbjct: 1 MFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + Y ++ + ++ F L+ + + GVDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +SA +VVN+ + + L RI GEEK + +IA I R+ P +TT Sbjct: 121 APLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEAAREVNPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + + HPA R FQA+RI VN+E+ + + L GG + V+ Sbjct: 181 ELVELIKEGIPAPARRKGGHPAKRIFQAIRIAVNDELTAFEDSAKDGIQLLHKGGRMSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S I + + +T+K ++P+ E++A N RSR Sbjct: 241 TFHSLEDRICKNLFKEYSKGPELPPGLPIIPEGYEPKLKIVTRKPILPSDEELAHNNRSR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|289423186|ref|ZP_06425001.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius 653-L] gi|289156517|gb|EFD05167.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius 653-L] Length = 311 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 173/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 HV VLL++ I LN P +D T G G+S+ K +I D+D A++ Sbjct: 1 MEFKHVSVLLDECIDNLNINPDGTYVDCTMGGAGHSKEIAKRLGENGRLICFDQDINAIN 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129 +E + ++K++ L + F +++ + ++ +D + + DLGVSS Q+D RGFS+ Sbjct: 61 VAKERLAEFKDRVILVHSNFENIKEELLERNIDSIDGVLADLGVSSHQLDEAFRGFSYMN 120 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM + +SA DVVN + +DL RI+ GEE ASRIA IV+ R+ TT Sbjct: 121 DASLDMRMDDRNSMSAWDVVNTYSQEDLHRIIKDYGEENWASRIAQFIVEERKEKDINTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA R+FQA+RI VNNE+ + + + + + GG + + Sbjct: 181 FELVDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVIKKMIDDSVSMMNPGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + S + + S + + IT+K ++P+++++ N RS Sbjct: 241 ITFHSLEDRIVKNEYKYLSLDCICPPELPFCSCDKVSEVKIITRKPILPSKQEIEVNPRS 300 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 301 RSAKLRVAEK 310 >gi|42559481|sp|Q8GE08|RSMH_HELMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27262272|gb|AAN87417.1| methyltransferase [Heliobacillus mobilis] Length = 312 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLLE+V+ L P P + LD T G GG+S + + +I LD+DP A++ + Sbjct: 5 HIPVLLEEVLEALQPRPDGLYLDGTVGGGGHSAAILEKTAGQGRLIGLDQDPRALAAARI 64 Query: 77 TMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +Q +L ++ F QL ++ +DG++ D+GVSS Q+D +RGF+++ P Sbjct: 65 KLEKFADQVTLVRSNFRQLGSVVEELGQKGKIDGILLDIGVSSHQLDEAERGFTYRAEAP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQD 190 LDMRM+ G ++A+ ++N+ ++ RIL GEE+ + RIA I +R + TT Sbjct: 125 LDMRMNPDGAVTAAQILNEYPEGEIFRILWEYGEERWSKRIAQFIVNRRTEQPLASTTDL 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + ++ HPA R+FQALRI VN+E+ L + L +A AL G L V+SF Sbjct: 185 VDVIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALQEALPAALDALAPSGRLAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK FFA ++ M A + IT+K + ++E++ N RS+SA Sbjct: 245 HSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKIITRKPITGSEEELKINPRSQSA 304 Query: 310 KLRAGMRT 317 KLR + Sbjct: 305 KLRVAQKI 312 >gi|170755383|ref|YP_001781092.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str. Okra] gi|263446089|sp|B1IKR0|RSMH_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169120595|gb|ACA44431.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str. Okra] Length = 309 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKEKLKDYENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA V+N ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|71082740|ref|YP_265459.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91762838|ref|ZP_01264803.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|88909208|sp|Q4FPN5|RSMH_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71061853|gb|AAZ20856.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91718640|gb|EAS85290.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 336 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 123/336 (36%), Positives = 185/336 (55%), Gaps = 8/336 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 M + I + +H PVLL ++I+++ P G +D TFG GGY++ + VIALDRD Sbjct: 1 MIATIIPDVRNHYPVLLSEIISIITPQYGGTFIDCTFGQGGYTKRILNFPETKVIALDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + QE ++++ FSQL + + V+FDLG S QI +G S Sbjct: 61 SESSIKAQELQNSFEDRLLFKNIKFSQLNNLKLKHENIKAVIFDLGYSLNQIKDPKKGLS 120 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F G L+M+M + SA + +NQ + K+LT+I G+E + RIAH IV+ R Sbjct: 121 FDSIGELNMKMGINEFSAKEAINQLDEKELTKIFKYFGDEADSKRIAHNIVEDRSKREIT 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + + + ++ +N + H AT+ FQALRIFVN EI EL GL +A K +K G++ Sbjct: 181 TEELVRII--ESSKRKRNYKTHSATKIFQALRIFVNKEISELIYGLINAAKVVKKDGVIA 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLED++VK FF S S RHM + +F+S+ KK +VP+ +++ N S Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRHMPKTEEKLNLFKSVIKKPIVPSDKEIRENPPS 298 Query: 307 RSAKLRAGMRTVERSIED----DSFVHLPRLPTLSQ 338 RSAKLR ++ + + D F HL + LS+ Sbjct: 299 RSAKLRYVIKKEDFFDFETDILDKFKHLIDIENLSK 334 >gi|291484065|dbj|BAI85140.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. natto BEST195] Length = 311 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++ + ++ VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S SA +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|321315277|ref|YP_004207564.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5] gi|320021551|gb|ADV96537.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5] Length = 311 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++ + ++ VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +A +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|311068034|ref|YP_003972957.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942] gi|310868551|gb|ADP32026.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942] Length = 311 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + L+ P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLDIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + YK Q L ++ F L+D + ++ +DGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLSGYKGQLILIKSNFRYLKDCLNEQGITEIDGVLFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSAPLTAKEVVNEWRYEDLVRIFFRYGEEKFSKQIARKIEEARSKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + IT+K + ++E++ N R+R Sbjct: 241 TFHSLEDRICKATFKEMSSLPELPPGLPVIPEEFEPELKLITRKPITASEEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|322805771|emb|CBZ03336.1| rRNAsmall subunit methyltransferase H [Clostridium botulinum H04402 065] Length = 309 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN V +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKEKLKDYENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT Sbjct: 121 APLDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCRKEPQIKIITKKPIEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 301 AKLRVCRKI 309 >gi|153953806|ref|YP_001394571.1| S-adenosyl-methyltransferase MraW [Clostridium kluyveri DSM 555] gi|219854422|ref|YP_002471544.1| hypothetical protein CKR_1079 [Clostridium kluyveri NBRC 12016] gi|263447433|sp|B9E0V5|RSMH_CLOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146346687|gb|EDK33223.1| MraW [Clostridium kluyveri DSM 555] gi|219568146|dbj|BAH06130.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 309 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+PVLL++ I LN V +D T G GG+S K +IA+D+D A++ Sbjct: 1 MEFKHIPVLLKETIDSLNIKQDGVYVDCTLGGGGHSLEILKRLSDKGKLIAIDQDISAIN 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++++K F +Q + + VDG++ DLGVSS Q+D G RGFS+ K Sbjct: 61 WSEERLKNFKN-IIYVHDNFYNIQQILKELKIDKVDGIIMDLGVSSYQLDEGKRGFSYMK 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA ++VNQ N ++L RI+ GEE + RI+ IVK R+ +P TT Sbjct: 120 DAPLDMRMNRDSSLSAYEIVNQYNEEELCRIIRDYGEENFSRRISKFIVKAREESPISTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+K + HPA R+FQA+RI VN E++ L + + L GG + ++ Sbjct: 180 LQLVGIIKKAIPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR++K F + + + KK +VPT+E+ + N RS+ Sbjct: 240 TFHSLEDRIIKSKFKMLENPCTCPADFPICICGKKPIVKIVNKKPIVPTEEEKSINPRSK 299 Query: 308 SAKLRAGMRT 317 S+KLR R Sbjct: 300 SSKLRIAERI 309 >gi|291557117|emb|CBL34234.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum V10Sc8a] Length = 308 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 174/306 (56%), Gaps = 4/306 (1%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV Sbjct: 2 SEKPIHIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVK 61 Query: 73 CGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E ++DY + +TF + D + VDGV+ DLGVSS Q+D +RGFS+ + Sbjct: 62 AAEEKLKDYPHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDA 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L Sbjct: 122 PLDMRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V +P ++FQA+RI VN E++EL +G+ A + LKAGG L +++FH Sbjct: 182 AEIVKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLKAGGRLAIITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 S+EDR+VK F +++ +K V ++E++A N RSRSAK Sbjct: 242 SIEDRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAK 301 Query: 311 LRAGMR 316 LR + Sbjct: 302 LRVIEK 307 >gi|299131933|ref|ZP_07025128.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2] gi|298592070|gb|EFI52270.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2] Length = 333 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 143/330 (43%), Positives = 198/330 (60%), Gaps = 5/330 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + H+ VL + + L P G + +DATFGAGGYS+ + G+ VI +DRD AV Sbjct: 1 MSTASSRHISVLGREAVEFLAPHAGGIYVDATFGAGGYSKRILEVAGTRVIGIDRDRTAV 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + + ++ Q FS L + VDG+V D+GVSSMQ+D +RGFSF+ Sbjct: 61 AEAFDLVERAEGRLTVVQDRFSNLAEVCAAEGAPQVDGIVMDIGVSSMQLDRAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM G SA+DVV A+ KDL I+ I GEE+ + +A AIVK RQ P TT Sbjct: 121 HDGALDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVKARQDNPIVTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V + N IHPATR+FQALRIF+N E++EL L ++E+ALK GG L+VV Sbjct: 181 KALADIVSSVVRA-RPNEIHPATRTFQALRIFINEELDELQTALHASERALKPGGRLVVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F ASR+ + RH+ F+ +TK+ VV + A N R+RS Sbjct: 240 SFHSLEDRIVKNFLASRAKQGGGSRHLPEVEQIAPSFEILTKRPVVANDNETAVNPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338 AKLRA RT S +D P L ++ + Sbjct: 300 AKLRAAQRTANPSHHEDMSFDWPTLRSVMK 329 >gi|329770446|ref|ZP_08261828.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis M325] gi|328836569|gb|EGF86229.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis M325] Length = 310 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 169/307 (55%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLLE+ I LN + +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLEEAIEGLNIKDDGIYVDCTLGGAGHSLEILKKLTTGKLYAFDQDNVALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +Y ++ ++ F L++ + + VDGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KIKLSEYADKVVFIKSNFENLKEKLAEQNVYEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA +VVN+ + DL RI GEEK + +IA I K+R+ AP +TT Sbjct: 121 RLDMRMDTDASISAYEVVNEYSYHDLVRIFYRYGEEKFSKQIARNIEKKRELAPIETTFQ 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A +K GG + V++ Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFENSLEQAIDIVKVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S + +++ N + + IT+K + P+ +++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYAKNKEIPKNLPILPNESLSKLKLITRKPICPSDKELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVAE 307 >gi|210622330|ref|ZP_03293099.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275] gi|210154318|gb|EEA85324.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275] Length = 311 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 +HV VLL + I LN P V +D T G G+S+ K S+ I D+D A++ Sbjct: 1 MEFNHVSVLLNECIDNLNIKPDGVYVDCTMGGAGHSKEIVKRLSSDGLFIGFDQDKNAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + +Y ++ + F +++ + +DGV+ DLGVSS Q+D DRGFS+ + Sbjct: 61 TAKERLAEYSDRVKFVHSNFENIKEELEKIGVHKIDGVLADLGVSSHQLDEADRGFSYMQ 120 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM SA +VVN+ ++L +I+ GE+ A RIA IV+ R P +TT Sbjct: 121 DAPLDMRMDVRKDFSAYNVVNEYTEEELAKIIKDYGEDNWAKRIAKFIVEGRAEKPIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA R+FQA+RI VNNE+ + + + A + GG + + Sbjct: 181 GELVDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMIDDACSIMNPGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F S + M + + IT+K ++P+ E++ N RS Sbjct: 241 ITFHSLEDRIVKNEFKYLSLDCVCPPEMPFCQCDKVSEVKVITRKPILPSAEEIEMNPRS 300 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 301 RSAKLRVAEK 310 >gi|257870252|ref|ZP_05649905.1| methyltransferase [Enterococcus gallinarum EG2] gi|257804416|gb|EEV33238.1| methyltransferase [Enterococcus gallinarum EG2] Length = 319 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H V+L++ + L P + +D T G G+S ++ A D+D A+ +E Sbjct: 6 HYTVMLKETVDGLAIRPDGIYVDCTLGGAGHSEYLLSQLSEEGHLYAFDQDQKAIDHAKE 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + ++ F L++ + + V GV++DLGVSS Q+D +RGFS+ + Sbjct: 66 RLAPYVAKGMVTFIKSNFRYLKEALQQQGVDQVSGVLYDLGVSSPQLDEAERGFSYHQDA 125 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +A +VVNQ + L +I GEEK + +IA I + R + P +TT + Sbjct: 126 PLDMRMDQSAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERTRANKPIETTGE 185 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + + HPA R FQA+RI VN+E+ + + L A L+ G + V++ Sbjct: 186 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGVIEESLEQAIDLLEKNGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + S I V + IT+K ++P++E+V+ N RSRS Sbjct: 246 FHSLEDRIVKSTFKAYSTPKDVPPGLPIIPEEFQPVLKLITRKPLLPSEEEVSENNRSRS 305 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 306 AKLRIAEKMKE 316 >gi|295399706|ref|ZP_06809687.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius C56-YS93] gi|312111775|ref|YP_003990091.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1] gi|294978109|gb|EFG53706.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius C56-YS93] gi|311216876|gb|ADP75480.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1] Length = 310 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + L+ P +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLHINPDGTYVDCTLGGGGHSEYLLSQLSEKGRLFAFDQDDMAIEY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y++Q + + F L + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKKRLARYEKQVTFIRRNFRFLAEELAARGVHKVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ +A D+VN + L I GEEK + ++A I + R+ +TT Sbjct: 121 APLDMRMNREQPLTAYDIVNHWPYEKLVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L ++I++ + + + HPA R FQA+RI VN+E++ + + A LK+GG + V+ Sbjct: 181 ELVNIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFQEAITQAIDVLKSGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + ITKK +VP++E+VA N R+R Sbjct: 241 TFHSLEDRICKATFKKASQSPQLPPGLPLIPEQYRPTLKMITKKPIVPSEEEVAHNHRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|317057677|ref|YP_004106144.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7] gi|315449946|gb|ADU23510.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7] Length = 311 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 162/310 (52%), Gaps = 4/310 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H+PVLL + I L+ P + D T G G+SR K +I++DRDP AV+ Sbjct: 1 MEFKHIPVLLNECIEGLDIKPDGIYCDGTAGGAGHSREIAKRLTTGRLISVDRDPEAVAV 60 Query: 74 GQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++ + +G DG++ DLGVSS Q+D +RGFS+ P Sbjct: 61 ATERLSGLPATVVRGNYSELDEIFARLGIEGADGILMDLGVSSYQLDNAERGFSYHTDAP 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G+SA DVVN + + L RI+ G+EK + IA IV+ R+ P +TT +L+ Sbjct: 121 LDMRMSSEGLSARDVVNSYDERTLARIIFEYGDEKFSRNIAKKIVQVREDKPIETTLELA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V +P ++FQA+RI VN E+E L+ L A L AGG L +++FHS Sbjct: 181 EVIKSAVPQKVRREKNPCKKTFQAIRIEVNAELEHLSIALDKAFDLLNAGGRLCIITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+ F S + + IT+K + P+ + N+R+ SAKL Sbjct: 241 LEDRLVKQRFKSFCQGCICPPDFPVCVCGRTPRGKLITRKPIEPSDSENEENKRAHSAKL 300 Query: 312 RAGMRTVERS 321 R + Sbjct: 301 RIIEKIKNDP 310 >gi|187779894|ref|ZP_02996367.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC 15579] gi|187773519|gb|EDU37321.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 263 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLLE+ I LN + +D T G GG+S+ K +I +D+D A+ Sbjct: 1 MEFKHISVLLEETIDSLNIKEDGIYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSALK 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++DY+ + + + + + + VDG+V DLGVSS Q+D RGFS+ K Sbjct: 61 AAKERLKDYENVIYVHNNFYNIDSILEELDIEKVDGIVMDLGVSSYQLDEASRGFSYMKD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA DVVN ++L +IL GEEK + +IA IV+RR +TT Sbjct: 121 APLDMRMNRDENFSAYDVVNSYGEEELFKILKNYGEEKFSRKIARFIVERRTEKSIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++ Sbjct: 181 ELVEIIKKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F I + ITKK + P++E+ N RSRS Sbjct: 241 FHSLEDRIVKVKFKELEKPCTCPPSFPICVCGKKPQIKIITKKPMEPSKEEKEINSRSRS 300 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 301 AKLRVCRRI 309 >gi|269926721|ref|YP_003323344.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC BAA-798] gi|269790381|gb|ACZ42522.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC BAA-798] Length = 304 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 185/306 (60%), Gaps = 11/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ IALL+ P +DAT GAGG++ + V+ LD DP A+ Q Sbjct: 1 MHTSVLLDESIALLDIHPNGKYIDATLGAGGHAEKMLERSSPSGRVLGLDADPRAIELAQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ L F ++ + DGV+FDLG+SSMQ+D GFSF++ P Sbjct: 61 QRLGRFVGRYVLVHTNFRYIEQAATEHDFNPCDGVLFDLGISSMQVDAWAAGFSFRRDEP 120 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR + G +A+D++ +++ ++L RI+ GEE ++ +IA AI K + T Q + Sbjct: 121 LDMRFDPTSGKTAADIIRESSEQELARIIWEYGEEPKSRQIARAI-KSSREPIITTVQLV 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ ++VY K +RIHPATR+FQALRI VN+E++ L +GL A + L+ GG L+V+SFH Sbjct: 180 QAV--ESVYKGKRSRIHPATRTFQALRIAVNDELDALQEGLAGALRVLRVGGRLVVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F RS + ++ + H + +T+K +VP++E+V N RSRSAK Sbjct: 238 SLEDRIVKHFMRERSKGCICPPEQLVCTCNHRPEIKVLTRKPIVPSEEEVKVNPRSRSAK 297 Query: 311 LRAGMR 316 LRA + Sbjct: 298 LRAAEK 303 >gi|254500690|ref|ZP_05112841.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11] gi|222436761|gb|EEE43440.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11] Length = 346 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 159/327 (48%), Positives = 217/327 (66%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL +V+ L+P PG+V++D TFGAGGYSR + + V+ +DRDP A++ GQE + Sbjct: 19 HVPVLLNEVLEWLDPQPGEVMVDGTFGAGGYSRKLLERDATVVGIDRDPDAIAGGQELVT 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + L F+ L+ + + G DGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 QSDGRLILVPGQFADLETHARESGFDGVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN+ V+DL RI+G+LGEEK+A +AHAI R+ PF T +L++LI+ Sbjct: 139 MEQAGPSAADVVNELPVRDLIRIIGVLGEEKRAPSVAHAIDNARKEKPFSRTLELANLIE 198 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + K +IHPATR+FQALRI+VN E+ + AQ L +AE+ LK GG L++VSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAERILKPGGRLVLVSFHSLED 258 Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF R+ + RHM PA F+ +T+K V + N R+RSAKLRAG Sbjct: 259 RIVKRFFQDRTKTRGGGSRHMPEEEVPPATFEILTRKAVEARDMETDANPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + E D +H+ +P L+ F G Sbjct: 319 RRTEAPARELD--IHVAGVPRLAAFHG 343 >gi|182417987|ref|ZP_02949294.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521] gi|237667344|ref|ZP_04527328.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378158|gb|EDT75693.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521] gi|237655692|gb|EEP53248.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str. BoNT E BL5262] Length = 310 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 165/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 HV VLL + I LN + +D T G G+S K S +I +D+D A+ Sbjct: 1 MEFKHVSVLLNECIDGLNIKEDGIYVDCTLGGAGHSSHILKHLSKNGLLIGIDQDTDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++DY + F + + + + VDG++ DLGVSS Q+D +RGFS+ + Sbjct: 61 AAKERLKDYDN-VKYVHSNFYNIDSILNELGIEKVDGILMDLGVSSYQLDNAERGFSYMQ 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + SA ++N + ++L +I+ GEEK A RIA+ IV RR P +TT Sbjct: 120 DAPLDMRMNRDNDFSAYSIINDYSEEELYKIIRDYGEEKFAKRIANFIVNRRAEKPIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN+E++ L + + L G + + Sbjct: 180 FELVDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKDGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F R + + + KK + P++E++ N RS Sbjct: 240 ITFHSLEDRIVKLKFRELENPCTCPREFPMCICGKKPLVKVLNKKGIAPSKEEIEENPRS 299 Query: 307 RSAKLRAGMRT 317 RSAK+R + Sbjct: 300 RSAKVRVVEKV 310 >gi|229918544|ref|YP_002887190.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b] gi|263447045|sp|C4L5T9|RSMH_EXISA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229469973|gb|ACQ71745.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b] Length = 310 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H VL + I LN P V +D T G G+S K + A D+D A++ Sbjct: 1 MFEHETVLKMESIEGLNIKPDGVYVDCTLGGAGHSEEIAKRLTTGQLYAFDQDDVALAHA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + Y+ + + ++ F L++ + + VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 KERLAPYEGRVTFIKSNFVHLKEELAQRGVTKVDGVLFDLGVSSPQLDEAERGFSYNYDA 120 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SA VVN+ + +L RI GEEK + +IA I + R P +TT + Sbjct: 121 PLDMRMDRSRDFSAYHVVNEWSFGELARIFFTYGEEKFSKQIARKIEQARADKPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++ + ++ HPA R+FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 181 LVDLIKEAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVQDAIDLLAVNGRICVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F RS + + IT+K +V ++ ++ NRRSRS Sbjct: 241 FHSLEDRICKQVFKERSQHPPLPPGLPVIPKEFEPELKLITRKPIVASEGELEDNRRSRS 300 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 301 AKLRVAEK 308 >gi|255656635|ref|ZP_05402044.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-23m63] gi|296449909|ref|ZP_06891673.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08] gi|296878290|ref|ZP_06902299.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07] gi|296261179|gb|EFH08010.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08] gi|296430738|gb|EFH16576.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07] Length = 311 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A++ +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAINTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + +DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYEGRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + +TT +L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKTIETTGELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + + HPA R+FQA+RI VNNE+ + + + A + GG + +++FH Sbjct: 185 DIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + +H I + + IT+K ++P++E+V N RSRSAK Sbjct: 245 SLEDRIVKNAFKYLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEVEANPRSRSAK 304 Query: 311 LRAGMRT 317 LR + Sbjct: 305 LRVAEKI 311 >gi|197116881|ref|YP_002137308.1| S-adenosyl-methyltransferase MraW [Geobacter bemidjiensis Bem] gi|263447558|sp|B5EBP3|RSMH_GEOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|197086241|gb|ACH37512.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter bemidjiensis Bem] Length = 312 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VL ++V+ L+P G V +D T G G++ +I DRD A++ +E Sbjct: 6 HISVLPDEVLQALSPRSGGVYVDGTLGGAGHAGLILTASAPDGQLIGFDRDEEAIAVARE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + + F+ + + + G+DG V DLGVSS Q+D +RGFSF PL Sbjct: 66 RLQVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G SA+D+VN +L RI+ GEE+ A R+A IVK R P +TT L Sbjct: 126 DMRMDRSSGQSAADLVNTLPEGELYRIISEYGEERWAKRVASFIVKARDERPIETTLQLV 185 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ +K R+HPATR+FQALRI VN E++ L +GL LK GG V+SFH Sbjct: 186 DVIKGSIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLEGLLSLLKQGGRGAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + I F+ +T+K + + +VA N RSRSAK Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICICGRVPRFKLVTRKPITAGEAEVAANPRSRSAK 305 Query: 311 LRAGMRT 317 LR + Sbjct: 306 LRVVEKI 312 >gi|331269345|ref|YP_004395837.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925] gi|329125895|gb|AEB75840.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925] Length = 309 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 170/306 (55%), Gaps = 7/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSHILKRLSKRGKLIGIDQDVNALKAAK 63 Query: 76 ETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E +++Y + + + + D + + VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 64 ERLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAML 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA +VVN+ + ++L RI+ GEE+ A +IA AIVK+R+ P +TT DL Sbjct: 124 DMRMNTEESISAYNVVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLDLV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + HPA ++FQA+RI VN+E+E L + + K L G + V++FHS Sbjct: 184 KIIKNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNLDGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + V + IT+K + P++++ N RSRS+KL Sbjct: 244 LEDRIVKTKFKKLENPCTCPKEFPVCICGMKPVVKVITRKPLEPSEDEKENNSRSRSSKL 303 Query: 312 RAGMRT 317 R + Sbjct: 304 RVAQKI 309 >gi|295696471|ref|YP_003589709.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912] gi|295412073|gb|ADG06565.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912] Length = 315 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 189/311 (60%), Gaps = 10/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL +V+A+L P PG + +D T G GG++++ + +I +D+D A++ +E Sbjct: 5 HEPVLLHEVLAILQPRPGGLYVDGTLGGGGHAQAILEAAAPDGRLIGIDQDDEALTASKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + + + F ++++ + +GVDG++ D+G+SS Q+D +RGFS++ P Sbjct: 65 RLTPYGGRVTTVKGNFRRIKEILWGLGVIEGVDGILLDVGLSSPQVDEAERGFSYRSDAP 124 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG +A D+VN +L R++ GEE+ A+RIA AIV+RRQ +TT +L Sbjct: 125 LDMRMDLSGTLTARDIVNSWPEGELARVVRDYGEERWAARIAKAIVRRRQRQAIETTGEL 184 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + L+++ + ++ + HPA R+FQALRI VN+E+ L +G++ A + L+ GG L V++F Sbjct: 185 AELVKEAIPAAARRHGPHPARRTFQALRIAVNDELGALEEGVKGALEVLRPGGRLAVIAF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ A + + + + + I ++ +VP E++A N R+RSA Sbjct: 245 HSLEDRIVKRILAEEARSCICPPEAPVCTCGRRPRVRLIGRRPIVPGPEELARNPRARSA 304 Query: 310 KLRAGMRTVER 320 KLR R + Sbjct: 305 KLRGAERLAQE 315 >gi|255101826|ref|ZP_05330803.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-63q42] gi|255307693|ref|ZP_05351864.1| S-adenosyl-methyltransferase [Clostridium difficile ATCC 43255] Length = 311 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + +DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT +L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + + HPA R+FQA+RI VNNE+ + + + A + GG + +++FH Sbjct: 185 DVIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + +H I + + IT+K ++P++E++ N RSRSAK Sbjct: 245 SLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSAK 304 Query: 311 LRAGMRT 317 LR + Sbjct: 305 LRVAEKI 311 >gi|218133493|ref|ZP_03462297.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC 43243] gi|217990868|gb|EEC56874.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC 43243] Length = 312 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLL++ I LN P + +D T G GG+S K G +I +D+D A+ Sbjct: 1 MEFKHKSVLLDETIESLNIKPNGIYVDGTLGGGGHSYEIAKRLTDGGRLIGIDQDEDAIR 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + ++ ++ ++ + + + + + VDG++ D+GVSS Q+D +RGF++++ Sbjct: 61 AAKERLSEFADRVTIVRDNYCNMPKVLDELGVSKVDGILLDIGVSSYQLDEAERGFTYKQ 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN + +DL RI+ GE+K A IA IV+ RQ P +TT Sbjct: 121 DAPLDMRMDQRQEMTAKDIVNGYSEEDLYRIIRDYGEDKFAKNIAKHIVQARQIKPVETT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + HPA ++FQA+RI +N E+E L + + + L G L + Sbjct: 181 FELDEIIKAAIPMKFRATGGHPAKKTFQAIRIELNRELEVLDESIDAMTDLLNDNGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + IT+K +VP +E++ N+R+ Sbjct: 241 ITFHSLEDRIVKTRFRKNENPCTCPPDFPVCVCGKKPKGKVITRKPIVPDEEELEENKRA 300 Query: 307 RSAKLRAGMR 316 +S+KLR R Sbjct: 301 KSSKLRVFER 310 >gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2] gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2] Length = 345 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 135/321 (42%), Positives = 192/321 (59%), Gaps = 5/321 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PV+L +V+A L P +D TFGAGGY+R V+A+DRDP A++ G + Sbjct: 17 ARHLPVMLAEVLAHLAPKDAGRYVDGTFGAGGYTRGILNAADCRVLAIDRDPTAIAAGAD 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L FS+L + DGVV D+GVSSMQ+D +RGFSF++ GPL Sbjct: 77 LVAEAAGRLTLVNDRFSRLDAVAQEHDFSPLDGVVLDIGVSSMQLDQAERGFSFRRDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM +G SA+D+V + L ++ LGEE+ + IA AIVK R +P T L+ Sbjct: 137 DMRMGDTGPSAADLVATLDEVQLAHLIWSLGEERHSRPIARAIVKARDESPITRTAQLAE 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + + + K +HPATR+FQALRI VN E+ EL Q L +AE+AL GG L+VV+FHSL Sbjct: 197 IVSR-IVWQKPGEMHPATRTFQALRIAVNEELSELVQALVAAERALAPGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F ++R+ A RH+ + F+ + K VV P ++VA N R+RSAKLRA Sbjct: 256 EDRIVKTFLSNRAKAPSASRHLPQAEGPEPAFRLVAKGVVEPGPDEVAGNPRARSAKLRA 315 Query: 314 GMRTVERSIEDDSFVHLPRLP 334 RT + + L P Sbjct: 316 AERTNAPAHPGGDLMGLLPAP 336 >gi|212639664|ref|YP_002316184.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anoxybacillus flavithermus WK1] gi|263446761|sp|B7GGJ0|RSMH_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212561144|gb|ACJ34199.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anoxybacillus flavithermus WK1] Length = 313 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 163/306 (53%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL++ + LN +D T G G+S + A D+D A+ Q+ Sbjct: 7 HVTVLLKETVDGLNIKKDGTYVDCTLGGAGHSEYLLSQLSPEGRLFAFDQDDIAIRHAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y+ QF++ ++ F L+ VDG++FDLGVSS Q+D +RGFS+Q PL Sbjct: 67 RLERYRGQFTIIKSNFRYLKQQLALYGVHEVDGILFDLGVSSPQLDMPERGFSYQHEAPL 126 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A DVVN + L +I GEEK + IA I + R+ P +TT +L+ Sbjct: 127 DMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQTRKQKPIETTTELA 186 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + HPA R FQA+RI VN+E+ + + A LK GG + V++FH Sbjct: 187 EVIKEAIPAPARRTGGHPAKRVFQAIRIAVNDELRAFEEAIEQAIDLLKPGGRISVITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+ K F S I + + + ITKK +VP++E++ N R+RSAK Sbjct: 247 SLEDRICKIAFKQASETPHLPPGLPIIPDEYKPKLKIITKKPIVPSEEELQHNHRARSAK 306 Query: 311 LRAGMR 316 LR + Sbjct: 307 LRIAEK 312 >gi|254976251|ref|ZP_05272723.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-66c26] gi|255093637|ref|ZP_05323115.1| S-adenosyl-methyltransferase [Clostridium difficile CIP 107932] gi|255315386|ref|ZP_05356969.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-76w55] gi|255518051|ref|ZP_05385727.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-97b34] gi|255651167|ref|ZP_05398069.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-37x79] gi|260684233|ref|YP_003215518.1| S-adenosyl-methyltransferase MraW [Clostridium difficile CD196] gi|260687892|ref|YP_003219026.1| S-adenosyl-methyltransferase MraW [Clostridium difficile R20291] gi|306521014|ref|ZP_07407361.1| S-adenosyl-methyltransferase MraW [Clostridium difficile QCD-32g58] gi|260210396|emb|CBA64792.1| S-adenosyl-methyltransferase [Clostridium difficile CD196] gi|260213909|emb|CBE05954.1| S-adenosyl-methyltransferase [Clostridium difficile R20291] Length = 311 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + +DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGKLV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + + HPA R+FQA+RI VNNE+ + + + A + GG + +++FH Sbjct: 185 DIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNKGGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + +H I + + IT+K ++P++E++ N RSRSAK Sbjct: 245 SLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSAK 304 Query: 311 LRAGMRT 317 LR + Sbjct: 305 LRVAEKI 311 >gi|52080116|ref|YP_078907.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC 14580] gi|52785490|ref|YP_091319.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC 14580] gi|319646109|ref|ZP_08000339.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus sp. BT1B_CT2] gi|59799852|sp|Q65JY8|RSMH_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52003327|gb|AAU23269.1| putative methyltransferase [Bacillus licheniformis ATCC 14580] gi|52347992|gb|AAU40626.1| YlxA [Bacillus licheniformis ATCC 14580] gi|317391859|gb|EFV72656.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus sp. BT1B_CT2] Length = 312 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 168/312 (53%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H VLL++ + LN +D T G G+S ++A D+D A+ Sbjct: 1 MFEHTTVLLKETVDGLNVKEDGTYVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DY+ Q ++ F L+D + + VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLADYEGQVVFIKSNFRYLKDRLNEIGITKVDGVLFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S G+SA +VVN+ +DL +I GEEK + +IA I K R+ +P +TT Sbjct: 121 APLDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKAREQSPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELRVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + +K + ++E++ N R+R Sbjct: 241 TFHSLEDRICKSTFKDMSSPPELPHGLPVIPKEFEPKLKLVNRKPITASEEELEHNNRAR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 301 SAKLRIAEKARE 312 >gi|296331089|ref|ZP_06873563.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674244|ref|YP_003865916.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. spizizenii str. W23] gi|296151733|gb|EFG92608.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412488|gb|ADM37607.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. spizizenii str. W23] Length = 311 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDMALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++ + ++ VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEALSDYKGQLILIKSNFRYLKECLKEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +A +VVN +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLTAKEVVNDWRYEDLVRIFFKYGEEKFSKQIARKIEEARIKSPIQTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKSTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|164686379|ref|ZP_02210409.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM 16795] gi|164601981|gb|EDQ95446.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM 16795] Length = 311 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 169/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 +HV VLL++ I LN V +D T G G+S+ K S I D+D A++ Sbjct: 1 MEFNHVSVLLDECIDNLNIKEDGVYVDCTMGGAGHSKEIVKRLSKDGLFIGFDQDKNAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + +Y ++ + FS +++ + +DGV+ DLGVSS Q+D DRGFS+ Sbjct: 61 TAKERLAEYSDRVRFVHSNFSNIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMH 120 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM SA DVVN + L +I+ GE+ A RIA IV+ R+ P + T Sbjct: 121 DAPLDMRMDIRKPFSAYDVVNTYTEEQLAKIIKDYGEDNWAKRIAKFIVETREEKPIEKT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA R+FQA+RI VNNE+ + + + A + GG + + Sbjct: 181 GELVDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVINKMIDDAVSMMNKGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F S + I + + IT+K ++P++E+V N RS Sbjct: 241 ITFHSLEDRIVKNEFKELSLSCVCPPELPICRCDKVSEVKVITRKPILPSKEEVEANPRS 300 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 301 RSAKLRVAEK 310 >gi|126700272|ref|YP_001089169.1| S-adenosyl-methyltransferase MraW [Clostridium difficile 630] gi|123174036|sp|Q182Z2|RSMH_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115251709|emb|CAJ69544.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Clostridium difficile] Length = 311 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + +DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT +L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HPA R+FQA+RI VNNE+ + + + A + GG + +++FH Sbjct: 185 DVIKKAIPKKARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + +H I + + IT+K ++P++E++ N RSRSAK Sbjct: 245 SLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSAK 304 Query: 311 LRAGMRT 317 LR + Sbjct: 305 LRVAEKI 311 >gi|225019362|ref|ZP_03708554.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum DSM 5476] gi|224947993|gb|EEG29202.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum DSM 5476] Length = 307 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 7/307 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLLE+ + LN P + +D T G G+SR K + + DRDP A++ Sbjct: 1 MEFQHTSVLLEECLEGLNIRPDGIYVDGTTGGAGHSREIAKRLTTGRLYSFDRDPDAIAV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + Y L A FS + + VDGV+ DLGVSS Q+D +RGFS+ Sbjct: 61 ASERLAQYPCS-ELVHANFSTMDAELAKRGVNQVDGVLLDLGVSSFQLDTAERGFSYLND 119 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 G LDMRMS SG+SA ++VN ++L RI+ GEEK IA IV++R+ P +TT+ Sbjct: 120 GILDMRMSKSGLSAREMVNTYPAEELARIIRDYGEEKYYYSIAKNIVRQREVQPIETTRQ 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LS ++ ++ +P+ R+FQA+RI VN E++ L+QGL +A L +GG L+V++F Sbjct: 180 LSEIVNSSMPAKARREKNPSKRTFQAIRIAVNEELDSLSQGLENAFSVLSSGGRLVVITF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+F A + + + + KK ++P+++++A NRRS+SA Sbjct: 240 HSLEDRIVKQFNAKMCQGCICPPDFPICVCNNRPKARLVNKKPILPSEQELAHNRRSQSA 299 Query: 310 KLRAGMR 316 KLR + Sbjct: 300 KLRILEK 306 >gi|326791423|ref|YP_004309244.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM 5427] gi|326542187|gb|ADZ84046.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM 5427] Length = 311 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 173/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VLL + I L P +D T G G++R C + I +D+D A++ Sbjct: 1 MKFEHVSVLLNECIEGLAIKPNGTYVDGTLGGAGHARVVCNYLTEEGHFIGIDQDKNALA 60 Query: 73 CGQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++D K + S+ + F ++ + + +GVDG++ DLGVSS Q+D RGFS+ Sbjct: 61 VSTERLKDVKPKVSIVNSNFEKVAEVLEVLGIEGVDGMLIDLGVSSHQLDEPSRGFSYMH 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G +A +VVN ++L RI+ GEEK A RIA IV+ R+ P +TT Sbjct: 121 DAPLDMRMDQDGAYTAYEVVNDMAEEELFRIIKEYGEEKWAKRIAQFIVEERKQKPIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA R+FQA+RI VN E+E + +++ L +GG L + Sbjct: 181 YELVEVIKKAIPQGARKDGPHPAKRTFQAIRIAVNRELEIIEPTIKAIVDKLNSGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + H I + + IT+K ++P+ E++ N RS Sbjct: 241 ITFHSLEDRIVKHAFRNLENPCTCAPHIPICVCGKKPLVKVITRKPILPSDEEIEINPRS 300 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 301 RSAKLRIIEK 310 >gi|83858922|ref|ZP_00952444.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii HTCC2633] gi|83853745|gb|EAP91597.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii HTCC2633] Length = 334 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 144/331 (43%), Positives = 196/331 (59%), Gaps = 9/331 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCG 74 + H+PV+L++V+ L P G + +D TFGAGGY+R V+ +DRDP A Sbjct: 2 SDQPHIPVMLDEVLTHLQPRDGGLYVDGTFGAGGYTRGILGAADCRVLGIDRDPSARETA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + YK +F+ FS ++D + GVDGVV DLGVSSMQ+D +RGFSFQK G Sbjct: 62 ERMKPAYKGRFAFGFGPFSMMEDIIEAAGSSGVDGVVLDLGVSSMQLDQAERGFSFQKDG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS SG +A+D VN +L I + GEE+ A R A+AIV+ R+ P T L Sbjct: 122 PLDMRMSQSGPTAADAVNHLEAHELAAIFKVYGEERHARRAANAIVRAREVEPITRTLVL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + V K RIHPATRSFQ LRI+VN+E+ EL +GL++AE+ L+ G L+VV+FH Sbjct: 182 ADIIGRAV-GGKPGRIHPATRSFQGLRIYVNDELGELVRGLQAAERVLRPAGRLVVVTFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F R+G P F ++KK + T+ + A N RSRSA Sbjct: 241 SLEDRIVKTFLRERAGLTGGGSRHQPEIQAERDPSFALVSKKALSATEAEAAENPRSRSA 300 Query: 310 KLRAGMRTVERSI--EDDSFVHLPRLPTLSQ 338 KLRA +R + ED+ F +P L + Sbjct: 301 KLRAAIRNEHEAWPREDEGFAGVPSYRRLEE 331 >gi|39998167|ref|NP_954118.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA] gi|42559425|sp|P60396|RSMH_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39985113|gb|AAR36468.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA] gi|298507105|gb|ADI85828.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter sulfurreducens KN400] Length = 311 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H PV+ +V+ L+P PG V +D T G G++R + +I DRDP A+ Sbjct: 1 MTFSHRPVMPAEVLEYLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + + E+F FS++ + + GVDG + D+GVSS Q+D +RGFSF Sbjct: 61 VARERLALFGERFRPVPGNFSEMGRVLAELGVDGVDGFLLDVGVSSHQLDTAERGFSFLT 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ +A+D+VN N +L RI+ GEE+ A RIA IVK R P + T Sbjct: 121 DAPLDMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKARVDGPIERT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ + RIHPATR+FQALRI VN+E+ L +GL SA L+ GG +V Sbjct: 181 LQLVDIIKGAIPRGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGLLRPGGRGVV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + + + + +T + VV +VA N R+ Sbjct: 241 ISFHSLEDRIVKTMFRRYAQGCTCPKELPRCVCGGVPRLRILTGRPVVAGDVEVAENPRA 300 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 301 RSAKLRAAEK 310 >gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG 3301] gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG 3301] Length = 347 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 166/326 (50%), Positives = 215/326 (65%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L P G VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRVMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + +L ++ FS L D V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 QFPGRLNLVESRFSALDDAVSTVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+DVVN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK++FA R+G RH+ ++ A F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLASFTPAIKGAVGPTAEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 RT +EDD S LP+LP ++ Sbjct: 319 TRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|115524112|ref|YP_781023.1| methyltransferase [Rhodopseudomonas palustris BisA53] gi|115518059|gb|ABJ06043.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris BisA53] Length = 400 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 150/336 (44%), Positives = 200/336 (59%), Gaps = 9/336 (2%) Query: 11 SAIHH-TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDP 68 +++ H+ VL + + L P G V +DATFGAGGYSR+ + G+ VI +DRD Sbjct: 67 ASMSPPESVRHISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDR 126 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125 A++ G + + + +L ++ FSQL + + VDGVV D+GVSSMQ+D +RGF Sbjct: 127 TAIAGGFDLVEQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGF 186 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF+ GPLDMRM G SA++V+ A+ DL I I GEE+ + +A AIV R P Sbjct: 187 SFRFDGPLDMRMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPI 246 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+ L+ K V+ K IHPATRSFQ LRIFVN E++EL L +AE+ LK GG L Sbjct: 247 VTTKALADLVSKVVHS-KPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRL 305 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +VVSFHSLEDR+VK FFA R RH F +TK+ V P+ E+ A N R Sbjct: 306 VVVSFHSLEDRIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPR 365 Query: 306 SRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 +RSAKLRAG RT + + LP PTL+ G Sbjct: 366 ARSAKLRAGERTAAPAQPE---APLPHWPTLASVMG 398 >gi|307244139|ref|ZP_07526257.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM 17678] gi|306492510|gb|EFM64545.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM 17678] Length = 311 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 174/310 (56%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VLL + I LN P V +D T G G+SR K ++ D+D A++ Sbjct: 1 MEFNHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSREIAKRLSDKGRLVCFDQDINAIN 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ +++Y ++ L + F L++ + +DGV+ DLGVSS Q+D DRGFS+ Sbjct: 61 VAKDRLKEYNDRVVLVHSNFENLKEELESRGIFKIDGVLADLGVSSHQLDEADRGFSYMH 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +SA VVN+ + +DL I+ GEEK A RIA IVK R TT Sbjct: 121 DARLDMRMDDRASMSAWQVVNEYSQEDLYTIIKDYGEEKWAKRIAEFIVKERADHSIDTT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 DL +I+K + ++ + HPA R+FQA+RI VNNE+ + + +R A + GG + + Sbjct: 181 FDLVDVIKKAIPKGARIDGPHPAKRTFQAIRIEVNNELGVINKMIRDAVSMMNKGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + + IT+K ++P++E+V FN RS Sbjct: 241 ITFHSLEDRIVKNEFRDLNKDCICPPELPFCQCNKKSELKIITRKPILPSEEEVDFNPRS 300 Query: 307 RSAKLRAGMR 316 RS+KLR G + Sbjct: 301 RSSKLRVGEK 310 >gi|255527766|ref|ZP_05394619.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296186678|ref|ZP_06855080.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296187067|ref|ZP_06855466.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|255508553|gb|EET84940.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296048354|gb|EFG87789.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296048715|gb|EFG88147.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] Length = 309 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLLE+ I LN + +D T G GG+S K +I +D+D A+ Sbjct: 1 MEFKHVSVLLEETIDALNVKEDGIYVDCTLGGGGHSYEILKRLSPKGRLIGIDQDTAALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++ + + F + + + + + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 61 AAGDRLKQFNN-VTYVHNNFYNIDEILQELNIEKVDGIMMDLGVSSYQLDEAERGFSYMK 119 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA D+VN + + + +I+ GE+ A RIA IV+RR+ +TT Sbjct: 120 DAPLDMRMNRDSSTSAYDIVNFYSEEQIFKIIKEYGEDNFAKRIAKFIVQRREKETIKTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + HPA R+FQA+RI VN E++ L + + + L GG + ++ Sbjct: 180 LELVDIIRQAIPARFQKDGHPAKRTFQAIRIEVNRELQILDKAVEDSVNRLNKGGRIAII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR +K F + + I+KK + P+ E+ N RS+ Sbjct: 240 TFHSLEDRKIKVKFKQLENPCTCPPDFPMCVCGKKPLVKLISKKPIEPSIEESENNSRSK 299 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 300 SAKLRVAERI 309 >gi|254564005|ref|YP_003071100.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens DM4] gi|254271283|emb|CAX27295.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens DM4] Length = 351 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 146/331 (44%), Positives = 196/331 (59%), Gaps = 12/331 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ Sbjct: 16 EQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 75 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G + + + L Q F L + D VV D+GVSSMQID RGFSF++ Sbjct: 76 GADLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWVVLDIGVSSMQIDEAQRGFSFRQD 135 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT Sbjct: 136 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQ 195 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F Sbjct: 196 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 255 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRS Sbjct: 256 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 315 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339 AKLRAG RT + L + TL+ Sbjct: 316 AKLRAGERTDAPAPPP-----LSAIETLASL 341 >gi|126649733|ref|ZP_01721969.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905] gi|126593452|gb|EAZ87397.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905] Length = 316 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 168/316 (53%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P V +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVHQLSDKGRLICFDQDMTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y E+ + + F L++ + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +A +VVNQ +DL RI GEEK + ++A I + R+SAP +TT Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V+ Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S ++ + + I++K ++P+ E++ N R+R Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLISRKPILPSDEELEVNNRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ E Sbjct: 301 SAKLRVVEKINDKGRE 316 >gi|163854037|ref|YP_001642080.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1] gi|263456431|sp|A9VW37|RSMH_METEP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163665642|gb|ABY33009.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1] Length = 351 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 146/331 (44%), Positives = 196/331 (59%), Gaps = 12/331 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ Sbjct: 16 AQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 75 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G + + + L Q F L + D VV D+GVSSMQID RGFSF++ Sbjct: 76 GADLVTASGGRLRLVQGRFGDLDTLIADQDEPQADWVVLDIGVSSMQIDEAQRGFSFRQD 135 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT Sbjct: 136 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQ 195 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F Sbjct: 196 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 255 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRS Sbjct: 256 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 315 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339 AKLRAG RT + L + TL+ Sbjct: 316 AKLRAGERTDAPAPPP-----LSAIETLASL 341 >gi|218532980|ref|YP_002423796.1| S-adenosyl-methyltransferase MraW [Methylobacterium chloromethanicum CM4] gi|263456414|sp|B7KU77|RSMH_METC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218525283|gb|ACK85868.1| S-adenosyl-methyltransferase MraW [Methylobacterium chloromethanicum CM4] Length = 353 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 146/331 (44%), Positives = 197/331 (59%), Gaps = 12/331 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ Sbjct: 18 AQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 77 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G + + + + L Q F +L + D VV D+GVSSMQID RGFSF++ Sbjct: 78 GADLVNAFGGRLRLVQGRFGELDTLIADQNEAQADWVVLDIGVSSMQIDEAQRGFSFRQD 137 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP TT Sbjct: 138 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIVTTAQ 197 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F Sbjct: 198 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 257 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRS Sbjct: 258 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 317 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339 AKLRAG RT + L + TL+ Sbjct: 318 AKLRAGERTDAPAPPP-----LSAIETLASL 343 >gi|148257427|ref|YP_001242012.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. BTAi1] gi|263445839|sp|A5EPL2|RSMH_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146409600|gb|ABQ38106.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. BTAi1] Length = 331 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 143/333 (42%), Positives = 193/333 (57%), Gaps = 7/333 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71 + HVPVL + +A+L P G +DATFGAGGY+R + G+ VI +DRD A+ Sbjct: 1 MSTADPRHVPVLGPEAVAMLAPREGGTYIDATFGAGGYTRLILQSPGTRVIGIDRDSTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + + +L + FS + D VDG+V D+GVSSMQ+D RGFSF+ Sbjct: 61 AGGAALVAEAGARLTLVENRFSAIADICASLGLSQVDGIVMDVGVSSMQLDSAARGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +G +A+DVV QA +DL I+ I GEE+ + +A AIV R+ P TT Sbjct: 121 FDGPLDMRMGETGPTAADVVAQAAERDLADIIYIFGEERHSRAVARAIVAARKEQPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ + V K IHPATR+FQ LRI VN E++EL Q L +AE+ L GG L VV Sbjct: 181 RQLADIVARVVRS-KPGDIHPATRTFQGLRILVNEELDELEQALSAAEQVLAPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F A RS RH+ FQ + +K VV Q ++ N R+RS Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEIAQETPTFQLLNRKPVVADQSEIEANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AKLR RT + + PRL + RG Sbjct: 300 AKLRGAERTAAPARLPPASSSWPRLADV--LRG 330 >gi|240141491|ref|YP_002965971.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens AM1] gi|263456428|sp|C5ATZ5|RSMH_METEA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240011468|gb|ACS42694.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens AM1] Length = 351 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 143/323 (44%), Positives = 194/323 (60%), Gaps = 7/323 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ Sbjct: 16 EQARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRG 75 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G + + + L Q F L + D +V D+GVSSMQID RGFSF++ Sbjct: 76 GADLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWIVLDIGVSSMQIDEAQRGFSFRQD 135 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT Sbjct: 136 GPLDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQ 195 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+F Sbjct: 196 LADLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTF 255 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRS Sbjct: 256 HSLEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRS 315 Query: 309 AKLRAGMRTVERSIEDDSFVHLP 331 AKLRAG RT + S + + Sbjct: 316 AKLRAGERTDAPAPPPLSAIEML 338 >gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11] gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11] Length = 330 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 157/328 (47%), Positives = 210/328 (64%), Gaps = 6/328 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M++ + G HVPVLL ++A + P LD TFGAGGYSR + G+ +VI +DRD Sbjct: 1 MTTDRQTSSGPHVPVLLRPLLAAVAPVS-GRWLDGTFGAGGYSRGLLEAGADHVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q+ + DY + + Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQDWIGDYDGRLTFQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDMAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+V + + L IL + GEE+ + RIA AIVK R AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFMFGEERASRRIARAIVKARTEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + SK + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLQLAGIIESCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK A R+ P+ F +T+K V P E++A N RS Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEQEETPSQFTLVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333 RSA+LR G RT +E + + +P+L Sbjct: 298 RSARLRVGRRTDAAPVEISAKDIGMPQL 325 >gi|310659206|ref|YP_003936927.1| s-adenosyl-dependent methyltransferase activity on membrane-located substrates [Clostridium sticklandii DSM 519] gi|308825984|emb|CBH22022.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Clostridium sticklandii] Length = 310 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 173/309 (55%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 HV VLL + + +L+ P + +D T G G+S K +I D+D A+S Sbjct: 1 MEFKHVTVLLNEAVDILDIKPDGIYVDGTLGGAGHSLEIVKKLTSGKLICFDQDINAISA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ ++ L + F L++ + + +DG + DLGVSS Q+D +RGFS+ + Sbjct: 61 AKEKLKDFMDKTILVHSNFENLREELNKLGIETIDGFLVDLGVSSHQLDVPERGFSYMQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +SA DVVN + +L R++ GEE ++RIA IV+RR + P +TT Sbjct: 121 APLDMRMDNNAELSAYDVVNTYSEAELKRVIKDYGEENWSARIAKIIVERRTTMPIRTTF 180 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L I+ + ++ HPA R+FQA+RI VN E++ + + L +A + GG+L V+ Sbjct: 181 ELVDAIKAAIPKKMRDENQHPAKRTFQAIRIEVNRELDVIEKTLLAAVDMMNEGGVLAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F V + IT+K ++P++ +V N RSR Sbjct: 241 TFHSLEDRIVKNVFKKLQYSCTCPPEFPVCICNSKQVVEIITRKPILPSENEVEMNPRSR 300 Query: 308 SAKLRAGMR 316 SAKLRA + Sbjct: 301 SAKLRAARK 309 >gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21] gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21] Length = 312 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 134/311 (43%), Positives = 194/311 (62%), Gaps = 9/311 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL++V+ LNP PG V++DATFGAGGY+R+ + G+ V A DRDP A++ G+ Sbjct: 4 APHIPVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGATVHAFDRDPDAIASGRTW 63 Query: 78 M--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + L FS++ + + + VDGVV D+GVSSMQ+D RGF+F GP Sbjct: 64 RETEQTPPRLILHPHRFSEMLEVMRAAGVERVDGVVMDIGVSSMQLDQAHRGFAFSADGP 123 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D +N A + ++ GEE+Q+ R+A AIV R P +TT DL+ Sbjct: 124 LDMRMSQDGESAADFLNTAAESTIADVVYQYGEERQSRRVARAIVAAR---PLETTGDLA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K + +++ PATR+FQA+RI VN E++EL+QGL +AE L+ GG L VVSFHS Sbjct: 181 RVVRKALGHKPHDKKDPATRTFQAIRIHVNGELDELSQGLSAAEHLLREGGRLAVVSFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F S RH+ + VF ++ K + PT+ ++ N R+RS+ LR Sbjct: 241 LEDRIVKRFLREASSTPSGSRHVPMAAQVDPVFSPVS-KAIKPTEAEIDRNPRARSSVLR 299 Query: 313 AGMRTVERSIE 323 +RT + E Sbjct: 300 HAVRTAAPARE 310 >gi|295706376|ref|YP_003599451.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319] gi|294804035|gb|ADF41101.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319] Length = 311 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL++ LN P V +D T G G+S +IA D+D A++ Sbjct: 1 MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y ++ L ++ F L++ + + VDGV+FDLGVSS Q+D +RGFSF Sbjct: 61 AKEKLAPYLDRVILIKSNFRYLKEQLMEHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + + SA +VVN+ + L +I GEEK + +IA I R+S P +TT Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI+ + + HPA R FQA+RI VN+E++ + A +K GG + V+ Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + S I + IT+K ++P++E++ N+R+R Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKMKVITRKPILPSEEEIEENKRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIVEK 309 >gi|323489493|ref|ZP_08094720.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Planococcus donghaensis MPA1U2] gi|323396624|gb|EGA89443.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Planococcus donghaensis MPA1U2] Length = 312 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL + + LN P + +D T G G+S ++ D+D A++ Sbjct: 1 MFNHTTVLLHETVDGLNVRPDGIYVDCTLGGAGHSEYLVQQLSDQGHLYCFDQDATAIAH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +++Y + + A F L++ + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLQEYLHRITFIHANFKFLKEELEMHGVEKVDGILYDLGVSSPQLDTPERGFSYHND 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA VVN+ + +DL RI GEEK + +IA I R+ P +TT Sbjct: 121 APLDMRMDQSAELSAYHVVNEWSFEDLVRIFYRYGEEKFSKQIARKIEAAREKQPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L I+ + + HPA R FQA+RI VN+E+ L+ A L GG + V+ Sbjct: 181 QLVECIKDGIPAFARRKGGHPAKRVFQAIRIAVNDELGAAETSLQDAVSLLAIGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S ++ + + + IT+K ++P++E++ N RSR Sbjct: 241 TFHSLEDRLCKAIFKEASSLPELPPNLPVIPDGMEPILKLITRKPILPSEEELEHNNRSR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 301 SAKLRIAEKINE 312 >gi|263460426|sp|A5G8K8|RSMH_GEOUR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 312 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 124/307 (40%), Positives = 176/307 (57%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ V+ +VI L P G + +D T G GG++R + +I DRD A++ E Sbjct: 6 HISVMAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ L Q F+ L + + + +DG + D+GVSS Q+D RGFSFQ PL Sbjct: 66 RLAPYGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SASD+VN + DL RI+ GEE+ A RIA IVKRR+ +P +TT L Sbjct: 126 DMRMDVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLV 185 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V + R+HPATR+FQALRI VN+E+ L + L + + LK GG +V+SFH Sbjct: 186 DVIKGAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F S + + + + + IT K V+ + +V+ N RSRSA+ Sbjct: 246 SLEDRIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSAR 305 Query: 311 LRAGMRT 317 LRA + Sbjct: 306 LRAAEKI 312 >gi|257888481|ref|ZP_05668134.1| methyltransferase [Enterococcus faecium 1,141,733] gi|257824535|gb|EEV51467.1| methyltransferase [Enterococcus faecium 1,141,733] Length = 319 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 170/312 (54%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y + + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A V+N+ +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYPYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 303 SRSAKLRIAEKI 314 >gi|15615138|ref|NP_243441.1| hypothetical protein BH2575 [Bacillus halodurans C-125] gi|20139210|sp|Q9K9S0|RSMH_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|10175196|dbj|BAB06294.1| BH2575 [Bacillus halodurans C-125] Length = 310 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 178/309 (57%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VL + + LN P + +D T G G+S+ K G ++ A D+D +A+S Sbjct: 1 MFEHVTVLKNESVIGLNIKPDGIYVDCTLGGAGHSQEIVKQLTGGGHLYAFDQDQYALSH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +ET+ Y+ F+L ++ F +++ + + VDGV+FDLGVSS Q+D +RGFS+ + Sbjct: 61 AKETLSPYRGSFTLIESNFRYMREKLEELGVHHVDGVLFDLGVSSPQLDEDERGFSYHRD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ +SA +VVNQ + +L +I+ GEE+ A +IA I + R+ P +TT Sbjct: 121 APLDMRMNRSQSLSAYEVVNQWDFIELMKIISRYGEERFAKQIARKIEQSREKKPIRTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R+FQA+RI VN+E+ + L +A G + V+ Sbjct: 181 ELVDIIKEAIPAPARRTGGHPAKRTFQAIRIAVNDELGAFEEALEAAIDLTAPKGRICVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + A + ITKK +VPT E++ N R+R Sbjct: 241 TFHSLEDRICKEMFREASKGPDVPPGLPVIPEEYKATLKLITKKPIVPTAEEIELNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|110800523|ref|YP_696548.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC 13124] gi|110803229|ref|YP_699148.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101] gi|168206081|ref|ZP_02632086.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str. JGS1987] gi|168210772|ref|ZP_02636397.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str. ATCC 3626] gi|168215224|ref|ZP_02640849.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str. F4969] gi|168215494|ref|ZP_02641119.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC 8239] gi|169343521|ref|ZP_02864520.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str. JGS1495] gi|122958788|sp|Q0TP92|RSMH_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123047275|sp|Q0SRV9|RSMH_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110675170|gb|ABG84157.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC 13124] gi|110683730|gb|ABG87100.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101] gi|169298081|gb|EDS80171.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str. JGS1495] gi|170662388|gb|EDT15071.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str. JGS1987] gi|170711095|gb|EDT23277.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str. ATCC 3626] gi|170713370|gb|EDT25552.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str. F4969] gi|182382153|gb|EDT79632.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC 8239] Length = 310 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 HV VLL++ I LN + +D T G G+S +I D+D A+ Sbjct: 1 MEFKHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + Sbjct: 61 AAGERLKDYKN-VTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQ 119 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA ++VN + ++L RI+ GEEK A RIA IVK R+ +TT Sbjct: 120 DAPLDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN E+E +++ + K L GG + + Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + I++K + ++E++ FN RS Sbjct: 240 ITFHSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIIEK 309 >gi|261419308|ref|YP_003252990.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61] gi|297530722|ref|YP_003671997.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3] gi|319766124|ref|YP_004131625.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52] gi|261375765|gb|ACX78508.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61] gi|297253974|gb|ADI27420.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3] gi|317110990|gb|ADU93482.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52] Length = 310 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 175/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + LN P + +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGGGGHSEYLLSRLSARGKLFAFDQDEAAIMH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y Q F LQ+ + K VDGV+FDLGVSS Q+D +RGFS+Q Sbjct: 61 ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A+++VN+ ++L RI GEEK + ++A I + R++ P +TT Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRTRPIKTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ + HPA R FQALRI VN+E+E + L A + L +GG + V+ Sbjct: 181 ELVDVIKEAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLASGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + + + V + ITKK +VP++E++ NRR+R Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNRRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|147678204|ref|YP_001212419.1| S-adenosyl-methyltransferase MraW [Pelotomaculum thermopropionicum SI] gi|262824781|sp|A5D113|RSMH_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146274301|dbj|BAF60050.1| predicted S-adenosylmethionine-dependent methyltransferase [Pelotomaculum thermopropionicum SI] Length = 311 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L++V+ LN PG V +D T G G+ + K +I +DRDP A++ + Sbjct: 5 HRPVMLDEVLEGLNLKPGGVYVDCTVGGAGHGEAILKRTGAEGRLIGIDRDPEALAAAER 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L +A F + + GVDG++FDLGVSS Q+D RGFS+++ L Sbjct: 65 RLVPYGKRVDLVRANFEDIGKVLERLGQTGVDGILFDLGVSSYQLDNPARGFSYKRDSLL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA ++VN ++L RI+ GEE+ A RIA IV+ R+ +P +TT L+ Sbjct: 125 DMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEERKRSPIETTGRLA 184 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ HPA R+FQALRI VN E+E L LRSA + L+ GG + V+++H Sbjct: 185 EIIKKAIPAGARREGPHPARRTFQALRIAVNRELEVLGGALRSAVRVLRPGGRICVITYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + +T + VVP+ +V N R+RSAK Sbjct: 245 SLEDRIVKETFRRLASPCTCPKEFPACVCGGKKEIKIVTARPVVPSAGEVEENPRARSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|262831542|sp|Q07PU1|RSMH_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 150/331 (45%), Positives = 197/331 (59%), Gaps = 8/331 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSC 73 H+ VL + + L P G V +DATFGAGGYSR+ + G+ VI +DRD A++ Sbjct: 4 PESVRHISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAG 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G + + + +L ++ FSQL + + VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 64 GFDLVEQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFD 123 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA++V+ A+ DL I I GEE+ + +A AIV R P TT+ Sbjct: 124 GPLDMRMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKA 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ K V+ K IHPATRSFQ LRIFVN E++EL L +AE+ LK GG L+VVSF Sbjct: 184 LADLVSKVVHS-KPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK FFA R RH F +TK+ V P+ E+ A N R+RSAK Sbjct: 243 HSLEDRIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAK 302 Query: 311 LRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 LRAG RT + + LP PTL+ G Sbjct: 303 LRAGERTAAPAQPE---APLPHWPTLASVMG 330 >gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas manganoxydans SI85-9A1] gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas manganoxydans SI85-9A1] Length = 348 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 158/328 (48%), Positives = 209/328 (63%), Gaps = 7/328 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L P PG+VI+D TFGAGGY+R+ G++VIA+DRDP A++ + Sbjct: 17 ARHIPVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGADVIAIDRDPAAIATARGL 76 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Y + + + F LQ V + VDG+V D+GVSSMQ+D +RGFSFQK G Sbjct: 77 AEGYDGRLAPVEGRFGDLQRIVETQAEAAGGRVDGIVLDVGVSSMQLDEAERGFSFQKDG 136 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS +G SA+DVVN+ V DL R++GILGEEKQA R+A AI RR PF T DL Sbjct: 137 PLDMRMSGAGPSAADVVNRLKVGDLLRVIGILGEEKQAGRVARAIEARRLEQPFTRTLDL 196 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K V ++I PATRSFQ LRIFVN+E+ ELA+ L +AE+ LK GG L++VSFH Sbjct: 197 AGVIGKVVGRGPKDKIDPATRSFQGLRIFVNDELGELARALVAAERVLKPGGRLVIVSFH 256 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F RS RH+ F + + V T + N R+RSAKL Sbjct: 257 SLEDRIVKRFLRDRSSPPSGSRHLPDMAPATQTFVARNR-AVGATDAEAERNPRARSAKL 315 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQF 339 RAG+RT E + +D + LP+L+ Sbjct: 316 RAGIRTAEPARQDADELGFAGLPSLADL 343 >gi|291530304|emb|CBK95889.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum 70/3] Length = 308 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 172/306 (56%), Gaps = 4/306 (1%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV Sbjct: 2 SEKPIHIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVK 61 Query: 73 CGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E ++DY + +TF + D + VDGV+ DLGVSS Q+D +RGFS+ + Sbjct: 62 AAEEKLKDYPHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDA 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L Sbjct: 122 PLDMRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V +P ++FQA+RI VN E++EL +G+ A + L AGG L +++FH Sbjct: 182 AEIVKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSAGGRLAIITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 S+EDR+VK F +++ +K V ++E++ N RSRSAK Sbjct: 242 SIEDRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKTVTASEEELEVNNRSRSAK 301 Query: 311 LRAGMR 316 LR + Sbjct: 302 LRVIEK 307 >gi|146295951|ref|YP_001179722.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor saccharolyticus DSM 8903] gi|263446954|sp|A4XHZ6|RSMH_CALS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145409527|gb|ABP66531.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 307 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 120/309 (38%), Positives = 187/309 (60%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ + L P + +DATFG GG+S+ + S+ ++A+D+D A+ Sbjct: 1 MYEHIPVLLEESTSYLVTKPDGIYVDATFGLGGHSKKILEKLSSNGFLVAIDKDEEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+E + + + FS+L + ++ +DG++FDLGVSS+Q+D +RGFS+ Sbjct: 61 GKEKFKKCNN-IKIVHSPFSRLDEVLNFLKIDKIDGILFDLGVSSLQLDKPERGFSYNSD 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN+ + K+L RI+ GEE+ A +IA IVKRR+ P TT+ Sbjct: 120 SFLDMRMDKTSKLTAYDVVNKYSEKELERIIREYGEERYAKKIAKEIVKRREQKPITTTK 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ LI V K+ +PA R+FQA+RI VN E+EE+ L + + LK+GG + V+S Sbjct: 180 ELNDLINSVVPRPKDGS-NPAKRTFQAIRIEVNGELEEIKVALEKSIRFLKSGGRICVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + +TKK + PT+E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKYHSLECICPKDIPVCVCGKKKELNILTKKPITPTKEEIERNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKI 307 >gi|253681660|ref|ZP_04862457.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str. 1873] gi|253561372|gb|EES90824.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str. 1873] Length = 309 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 172/306 (56%), Gaps = 7/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSYILKRLSKKGKLIGIDQDINALKAAK 63 Query: 76 ETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E +++Y + + + + D + + VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 64 EKLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAVL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA ++VN+ + ++L RI+ GEE+ A +IA AIVK+R+ P +TT +L Sbjct: 124 DMRMNTEESVSAYNIVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA ++FQA+RI VN+E+E L + + K L + G + +++FHS Sbjct: 184 KIIKKVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNSHGRISIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + V + IT+K + P+QE+ N RS+S+KL Sbjct: 244 LEDRIVKNKFKELENPCTCPKEFPICICGMKPVVKVITRKPLEPSQEEKENNSRSKSSKL 303 Query: 312 RAGMRT 317 R R Sbjct: 304 RVAQRI 309 >gi|294501027|ref|YP_003564727.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551] gi|294350964|gb|ADE71293.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551] Length = 311 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL++ LN P V +D T G G+S +IA D+D A++ Sbjct: 1 MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y ++ L ++ F L++ + VDGV+FDLGVSS Q+D +RGFSF Sbjct: 61 AKEKLAPYLDRVILIKSNFRYLKEQLMKHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + + SA +VVN+ + L +I GEEK + +IA I R+S P +TT Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI+ + + HPA R FQA+RI VN+E++ + A +K GG + V+ Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + S I + IT+K ++P++E++ N+R+R Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKMKVITRKPILPSEEEIEENKRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIVEK 309 >gi|257899142|ref|ZP_05678795.1| methyltransferase [Enterococcus faecium Com15] gi|293571737|ref|ZP_06682756.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980] gi|257837054|gb|EEV62128.1| methyltransferase [Enterococcus faecium Com15] gi|291608194|gb|EFF37497.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980] Length = 319 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 171/312 (54%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y + + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 303 SRSAKLRIAEKI 314 >gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1] gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1] Length = 339 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 152/324 (46%), Positives = 214/324 (66%), Gaps = 3/324 (0%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L PA GK+ILD TFGAGGY+R+ + G++VIA+D+DP A++ G+ Sbjct: 14 APHLPVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGADVIAIDQDPDAIAGGKPL 73 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 +++ + L + FS++++ + +DG+V D+GVSSMQ+D +RGFSF++ GPLDMRM Sbjct: 74 AQEFAPRLRLERGRFSEMEEIAGEM-LDGIVLDVGVSSMQLDQAERGFSFRREGPLDMRM 132 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G SA+DVVN+ DL RI G+LGEE+ A RIA AI K R PF+TT DL+ L+++ Sbjct: 133 GQEGTSAADVVNKFKAGDLARIFGLLGEERHAGRIARAIEKGRAEKPFRTTGDLAELVER 192 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + ++IHPATR FQ LRIFVN+E+ ELA+ L +AE+ LK GG+L VV+FHSLEDR+ Sbjct: 193 VIGHRPTDKIHPATRVFQGLRIFVNDELGELARALFAAERLLKPGGILAVVTFHSLEDRI 252 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+F +RSG RH+ A VF+ K V P + + A N R+RSA LRA RT Sbjct: 253 VKRFLQARSGPQAQSRHLPEKAAAQPVFEKPM-KPVSPGEAETAENPRARSAHLRAARRT 311 Query: 318 VERS-IEDDSFVHLPRLPTLSQFR 340 + ++D +P L Q Sbjct: 312 AHPAGVQDFKLFGVPALFVTEQLG 335 >gi|257885174|ref|ZP_05664827.1| methyltransferase [Enterococcus faecium 1,231,501] gi|261206514|ref|ZP_05921214.1| methyltransferase [Enterococcus faecium TC 6] gi|289565424|ref|ZP_06445873.1| methylase MraW [Enterococcus faecium D344SRF] gi|294614715|ref|ZP_06694617.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636] gi|294618987|ref|ZP_06698482.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679] gi|257821026|gb|EEV48160.1| methyltransferase [Enterococcus faecium 1,231,501] gi|260079224|gb|EEW66915.1| methyltransferase [Enterococcus faecium TC 6] gi|289162753|gb|EFD10604.1| methylase MraW [Enterococcus faecium D344SRF] gi|291592453|gb|EFF24060.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636] gi|291594648|gb|EFF26030.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679] Length = 319 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 171/312 (54%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y + + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S +SA V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 303 SRSAKLRIAEKI 314 >gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278] gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278] Length = 331 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 140/328 (42%), Positives = 194/328 (59%), Gaps = 5/328 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71 + H+PVL + +A+L P G +DATFGAGGY+R G+ VIA+DRD A+ Sbjct: 1 MSTADPRHIPVLGPEAVAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRDSTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + + + +L ++ FS L + + VDG+V D+GVSSMQ+D RGFSF+ Sbjct: 61 AGGADLVGEANGRLTLVESRFSALAEICAAQAVGQVDGIVMDVGVSSMQLDTAARGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +G SA+DV+ QA+ +DL ++ I GEE+ + IA AIV R+ TT Sbjct: 121 FDGPLDMRMADTGPSAADVIAQASERDLADVIYIFGEERHSRGIARAIVAARKEQQITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ + V K IHPATR+FQALRI VN E++EL Q L +AE+ L G L VV Sbjct: 181 RQLADIVARVVRS-KPGDIHPATRTFQALRILVNEELDELEQALSAAERILPPSGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F A RS RH+ FQ + +K VV + + N R+RS Sbjct: 240 SFHSLEDRIVKTFLAERSKIGGGSRHLPEIAQQAPSFQLLNRKPVVADEAETVANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTL 336 AKLR RT + S PRL + Sbjct: 300 AKLRGAARTTAPAHPPSSSSAWPRLADV 327 >gi|225175505|ref|ZP_03729499.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1] gi|225168834|gb|EEG77634.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1] Length = 320 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++ ++ L P PG+V +D T G GG+SR+ + +IA+D+D A++ +E Sbjct: 6 HEPVLLQETLSALAPRPGEVFVDGTVGGGGHSRAILEKITPHGRLIAIDQDKNALAAAKE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ ++E + F+ LQD + + VDG++ D+GVSS Q+D G+RGFSF PL Sbjct: 66 TLAPWREHVTFVHNNFANLQDVLESEGVQKVDGILLDIGVSSHQLDEGERGFSFNTEAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF--QTTQD 190 DMRM+ G++A+ +VN+ + ++LTRIL GEE A RIA +V RR++ T Q Sbjct: 126 DMRMNRDKGVTAAQLVNELDAEELTRILRDYGEELWARRIAEFMVARRKNHGPIETTGQL 185 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + ++ HPA R+FQALRI VN+E+ L + + LK GG L V++F Sbjct: 186 VDVIKAAIPARARRRGPHPARRTFQALRIAVNDELGVLERAVNDGIDCLKTGGRLAVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VKK F R+ + + + A + +T K V ++++ N R+RSA Sbjct: 246 HSLEDRMVKKIFQHRAAGCQCPPGLPQCACGNQAHVKILTGKPVQAKEDELERNPRARSA 305 Query: 310 KLRAGMRTVE 319 KLRA ++ + Sbjct: 306 KLRAVIKVLN 315 >gi|291522688|emb|CBK80981.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7] Length = 313 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 94/313 (30%), Positives = 163/313 (52%), Gaps = 9/313 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL + I L+ + +D T G GG++ + + +I +D+D A+ Sbjct: 1 MTFQHYSVLLNETIEQLDIKENGIYVDGTLGGGGHASAVLQRLGETGRLIGIDQDAAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + ++ ++ ++ +S + + D GVDG+V DLGVSS Q+D +RGF++++ Sbjct: 61 AAGERLAPFGDKVTIVRSNYSAMPQVLADLGIHGVDGIVLDLGVSSYQLDTVERGFTYRE 120 Query: 130 SGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM + +VN +L ++ GE+K A IA IV R+ P +TT Sbjct: 121 DTVLDMRMDQRQTKTARDIVNDYTETELFHMIRDYGEDKFARNIAKHIVMAREKKPIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I+ + + HP+ +++QA+RI +N+E++ L L L G + V Sbjct: 181 GELNDIIRAAIPAKVRAKGGHPSKKTYQAIRIELNHELDVLKNTLDQMIDLLNDHGRICV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + IT+K ++P++E++ N RS Sbjct: 241 ITFHSLEDRIVKNIFNTNERPCTCPPSFPVCVCGKKSKGRVITRKPILPSEEELEVNSRS 300 Query: 307 RSAKLRAGMRTVE 319 +SAKLR R E Sbjct: 301 KSAKLRVFERIRE 313 >gi|20138864|sp|O07665|RSMH_ENTHR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2624083|emb|CAA74239.1| mraW [Enterococcus hirae] Length = 319 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 164/312 (52%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H V+L++ + LN P + +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGIYVDCTLGGAGHSEYLLSQLNTNGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG--VVFDLGVSSMQIDCGDRGFSFQ 128 + + Y K + +A F +L+ + + +++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKVRLAPYIEKGMVTFIKANFRELEAKIKEHVPQVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S +SA DVVN+ + +L +I GEEK + +IA I + R+ P QT Sbjct: 123 QDAPLDMRMDQSAPLSAYDVVNEYSYNELVKIFFRYGEEKFSKQIAREIERVRKIHPIQT 182 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + + HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKDVIPAPARRKGGHPAKRIFQAIRIAVNDELGAEEASLEQAIRLLKINGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + I +K ++P++E+++ N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVVPEEFQPELKLINRKPILPSEEELSENNR 302 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 303 SRSAKLRIAEKI 314 >gi|302874623|ref|YP_003843256.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] gi|307690766|ref|ZP_07633212.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] gi|302577480|gb|ADL51492.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] Length = 311 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 162/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLLE+ I L+ P + +D T G G+S K +I +D+D A++ Sbjct: 1 MEFKHVSVLLEECIEGLSIKPDGIYVDCTLGGAGHSFEIVKQLTSEGRLIGIDQDTNAIN 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++DY + F + + + + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 61 AAKEKLKDYNN-VTYVHDNFHNIGEILENLNIDKVDGILMDLGVSSHQLDVAERGFSYMK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA D+VN + + L +I+ GEEK A RIA IVK R +TT Sbjct: 120 DAPLDMRMNQERDFSAYDIVNTYSEEQLFKIIRDYGEEKFAKRIASFIVKNRNEKTIETT 179 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ + + HPA R+FQA+RI VN E+E L + + L G + + Sbjct: 180 FQLVEIIKNAIPAKARREGPHPAKRTFQAIRIEVNKELEILDKAINDGIDKLALDGRICI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + ++ + + I++K + + E++ +N RS Sbjct: 240 ITFHSLEDRIVKNIYKEQANPCTCPKEFPICICNRKPKVKIISRKPIEASAEELEYNPRS 299 Query: 307 RSAKLRAGMRT 317 RSAKLR + Sbjct: 300 RSAKLRVAEKI 310 >gi|241888447|ref|ZP_04775758.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379] gi|241864889|gb|EER69260.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379] Length = 311 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL + + L+ + +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLNEAVEGLDIKEDGIYVDCTLGGAGHSLEILKRLKNGKLYAFDQDNVALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + +Y ++ ++ F L++ + + VDGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KEKLAEYSDKVVFIKSNFVNLKEKLAEHGVNEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA +VVN+ + DL +I GEE + +IA I K+R+ P +TT + Sbjct: 121 RLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A + GG + V++ Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVSVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S S ++ I + + IT+K + P+ ++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYSKSKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVAQ 307 >gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 316 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 182/306 (59%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + L P PG V +DAT G GG++ + VIA D+D A++ + Sbjct: 5 HETVLLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEP 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R Y + +L +A F+++++ + VDGV+FDLGVSS Q D +RGFS+ GPL Sbjct: 65 LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A ++VN+ + ++L RI+ GEE+ A+ IA AI + R P +TT +L+ Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAITRARSKKPIETTTELA 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + + + + HPA R+FQA+RI VN+E+ L +G+ +A +AL+ GG L V++FH Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + + + + + +++K V P+ E++ N R+RSAK Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304 Query: 311 LRAGMR 316 LRA + Sbjct: 305 LRAFEK 310 >gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis ITI-1157] gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis ITI-1157] Length = 331 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 146/326 (44%), Positives = 198/326 (60%), Gaps = 6/326 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 + T H+PVLL ++ + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 4 ADHTPTDKPHIPVLLRPLLDAVRPVS-GTWLDGTFGAGGYTRGLLEAGADRVIGVDRDPL 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + +Y ++ + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K Sbjct: 63 AFEMAADWAAEYGDRLVMQPGVFSRMDEYASD--LDGVVLDLGVSSMQLDQAERGFSFMK 120 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G SA+D+VN A L IL GEE+ + RIA AIVK R AP TT Sbjct: 121 DGPLDMRMSQEGESAADLVNTATEAQLADILFHYGEERASRRIARAIVKARAEAPITTTL 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +++ + +K + HPATRSFQALRI VN E EEL QGL +AE+ALK GG L VV+ Sbjct: 181 RLAEIVESCLPRAKPGQSHPATRSFQALRIAVNAEYEELFQGLMAAERALKPGGKLAVVT 240 Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+EDR+VK+F +R+GK A R+ F T+K + P +++ N R+RS Sbjct: 241 FHSVEDRMVKRFLQARAGKTGRANRYAPEIQQDQPQFTLKTRKAIGPDAQELQDNPRARS 300 Query: 309 AKLRAGMRTVERSIEDDS-FVHLPRL 333 AKLR +RT + E D+ + +P + Sbjct: 301 AKLRVAVRTDAPAGEIDARAIGMPMI 326 >gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4] gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4] Length = 346 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 162/345 (46%), Positives = 223/345 (64%), Gaps = 14/345 (4%) Query: 9 MSSAIHHTI-------GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 M + ++ HVPVLL+ V+ L P PG+VI+D TFGAGGYSR+ + G++V Sbjct: 1 MMAQSTSSVDLEAGGPERHVPVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGASV 60 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQI 118 I +DRDP A++ GQ + + +L F+ L+ + VDGVV DLGVSSMQ+ Sbjct: 61 IGVDRDPDAIAGGQPLVEASDGRLTLVPGCFADLETHARSLGHDAVDGVVLDLGVSSMQL 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 D +RGFSF + GPLDMRM G SA+DVVN+ +V+DL RI+G+LGEEK+A+ +AHAI Sbjct: 121 DEAERGFSFLRDGPLDMRMEQEGPSAADVVNELSVRDLIRIIGVLGEEKRATTVAHAIDN 180 Query: 179 RRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF T +L++L++K + K +IHPATR+FQALRI+VN E+ + AQ L +AE Sbjct: 181 ARKEGPFTRTGELAALVEKVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAEN 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 LK GG L+VVSFHSLEDR+VK+F A RS RHM + P F+ +T+K + T Sbjct: 241 ILKPGGRLVVVSFHSLEDRIVKRFLADRSKTHAGGSRHMPETEVEPPTFELLTRKAIDGT 300 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 ++A N R+RSAKLRAG RT + D +H +P L+ F+G Sbjct: 301 DAEIAGNPRARSAKLRAGRRTTNPARSLD--IHAAGVPRLADFKG 343 >gi|78484904|ref|YP_390829.1| methyltransferase [Thiomicrospira crunogena XCL-2] gi|123555855|sp|Q31I68|RSMH_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78363190|gb|ABB41155.1| S-adenosyl-methyltransferase MraW [Thiomicrospira crunogena XCL-2] Length = 314 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 176/318 (55%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS +H PV+L + +A LN P + +D TFG GG+SR+ ++A+D Sbjct: 1 MSEIEQTGQSNHYPVMLSESVAGLNIDPNGIYIDCTFGRGGHSRAILNELGEQGRLLAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCG 121 +DP A+ D +F + +F LQ Y +DG++ DLGVSS Q+D Sbjct: 61 QDPEAIRYADANFDD--PRFEIQHGSFEALQQYCEARDWVGKIDGILIDLGVSSPQLDEA 118 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF +SGPLDMRM+ G+SA + + Q + K L ++L GEE+ + RIA I + Sbjct: 119 ERGFSFMRSGPLDMRMNPQTGLSAKEWLTQVDEKTLAQVLKQYGEERFSGRIARHIKEAV 178 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q QTT DL+ ++ K ++ ++ HPATR+FQA+RI VN E++ L L + LK Sbjct: 179 QEQKLQTTLDLAQVVTKASPKTEKHK-HPATRTFQAIRIAVNRELDVLKTVLEVSVAVLK 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L V+SFHSLEDR+VK+F +S K + I V + + K V P++E+ Sbjct: 238 TGGRLSVISFHSLEDRIVKQFIRDQSRIKDLFPDSPIQLEVVEPVIKKV-GKPVFPSKEE 296 Query: 300 VAFNRRSRSAKLRAGMRT 317 N RSRSA LR R Sbjct: 297 CQENPRSRSAVLRIAERI 314 >gi|311029920|ref|ZP_07708010.1| S-adenosyl-methyltransferase MraW [Bacillus sp. m3-13] Length = 312 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 167/312 (53%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + HV VLL + + LN +D T G G+S +IA D+D A+ Sbjct: 1 MFHHVTVLLNEAVEGLNIKEDGTYVDCTLGGAGHSSEIVKQLSDKGRLIAFDQDDHALEH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +Y ++ ++ F L++ + ++ VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKNVLHNYLDRVIFIKSNFKHLKEKLYEQGITKVDGVLFDLGVSSPQLDTPERGFSYHHE 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + SA DVVN+ + + L RI GEEK + +IA I + R+S P +TT Sbjct: 121 APLDMRMDMNSPLSAYDVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEEYRKSKPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HPA R FQA+RI VN+E+ + A LK GG + V+ Sbjct: 181 ELVEIIKDGIPAPARRTGGHPAKRVFQAIRIAVNDELGVFEDAIHQAIDVLKVGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S I + + IT+K ++P++E++ N R+R Sbjct: 241 TFHSLEDRMCKVAFKEKSQLPQLPPGLPIIPEEFQPILKLITRKPILPSEEELETNNRAR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + + Sbjct: 301 SAKLRIAEKAKD 312 >gi|182626151|ref|ZP_02953911.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str. JGS1721] gi|177908588|gb|EDT71113.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str. JGS1721] Length = 310 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 167/310 (53%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 HV VLL++ I LN + +D T G G+S +I D+D A+ Sbjct: 1 MEFKHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + Sbjct: 61 AAGERLKDYKN-VTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQ 119 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA ++VN + ++L RI+ GEEK A RIA IVK R+ ++T Sbjct: 120 DAPLDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIEST 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN E+E +++ + K L GG + + Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + I++K + ++E++ FN RS Sbjct: 240 ITFHSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIIEK 309 >gi|325265585|ref|ZP_08132276.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella denitrificans ATCC 33394] gi|324982933|gb|EGC18554.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella denitrificans ATCC 33394] Length = 323 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 168/317 (52%), Gaps = 10/317 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + +H+ VLL + + LN P + +D TFG GG+SR +I D+DP Sbjct: 1 MTTQSFEHITVLLNEAVDALNVRPSGIYVDGTFGRGGHSRLILSRLNEQGRLIVFDKDPA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ QE + ++ S+F FS + +DG +FDLG+SS QID RGFS Sbjct: 61 AIAVAQE-LARQDQRVSVFHQGFSHFDAACTELGISQIDGALFDLGISSPQIDDASRGFS 119 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G SA++ + A+ +++ ++ GEE+ + +IA AIV +R AP Sbjct: 120 FRFDAPLDMRMDTTRGESAAEWLMHADEQEIHEVIKNYGEERFSRQIARAIVAKRIEAPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ + + V S+ HPATR+FQA+RI++N E++E+AQ L L G L Sbjct: 180 HTTGQLAEIAAQCV-RSREKGQHPATRTFQAIRIYINRELDEVAQVLPQVTTRLNTHGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK+F S + A P I K + E++ +N Sbjct: 239 AVIAFHSLEDRIVKQFMREYSTHAPLPKWAAVREADLPKPPLRIVGKPIKAGAEELNYNP 298 Query: 305 RSRSAKLRAGMRTVERS 321 R+RSA LR RT Sbjct: 299 RARSAILRVAERTDGEF 315 >gi|229541208|ref|ZP_04430268.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1] gi|229325628|gb|EEN91303.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1] Length = 309 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL++ + L+ P + +D T G GG+S + G ++ A D+D A+ Sbjct: 1 MFQHKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLQQLTGGHLYAFDQDETAIQHA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + + + ++ F L+ + + VDG+++DLGVSS Q+D +RGFS+Q Sbjct: 61 KEKFAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDA 120 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A +VVN+ + L RI GEEK + +IA I R P +TT + Sbjct: 121 PLDMRMDLDTPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI++ + ++ HPA R FQA+RI VN+E+ L A LK GG + V++ Sbjct: 181 LADLIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K S + V + IT+K +VP E+V N RSRS Sbjct: 241 FHSLEDRICKNILKEYSSAGDLPHGLPVIPKEYEPVLKLITRKPIVPNDEEVGENNRSRS 300 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 301 AKLRIAEK 308 >gi|304404001|ref|ZP_07385663.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus YK9] gi|304346979|gb|EFM12811.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus YK9] Length = 317 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 168/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VL+E+ I L P + +D T G G+S G +IA D+D +A Sbjct: 1 MFQHVTVLMEEAIDGLAVKPDGIYVDCTLGGAGHSSGIVSRLGGGGRLIAFDQDDWAHDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----------GVDGVVFDLGVSSMQIDCGDR 123 + + ++ +L ++ F L+ + + VDG++FDLGVSS Q+D +R Sbjct: 61 ARIRLASSMDKVTLIKSNFRYLEQRLLECEGVPQKDGIPQVDGILFDLGVSSPQLDEAER 120 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ PLDMRM ++A D+VN + +D+ RIL GEEK A +IA I R + Sbjct: 121 GFSYNHDAPLDMRMDRDIALTAGDIVNTWDERDIARILMEYGEEKFARKIAREIGAARAN 180 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP +TT +L LI+ + + + HPA R+FQALRI VN+E++ L A + LK Sbjct: 181 APIETTGELVELIKAGIPAAARRTGGHPAKRTFQALRIAVNDELDAEEDALEQAIRCLKP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDV 300 GG V++FHSLEDR+ K+ FA K + + +K +VP++E++ Sbjct: 241 GGRASVITFHSLEDRICKQTFAKYLEKCSCPPDFPLCVCGGQGALKLVNRKPIVPSEEEL 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 EANPRARSAKLRVAEK 316 >gi|51892339|ref|YP_075030.1| S-adenosyl-methyltransferase MraW [Symbiobacterium thermophilum IAM 14863] gi|116241373|sp|Q67Q57|RSMH_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51856028|dbj|BAD40186.1| putative S-adenosylmethionine-dependent methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 318 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 170/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL++ + L PG +D T G GG++ + +I LD+D A+ + Sbjct: 5 HIPVLLQETMEALAVRPGGTYIDCTVGGGGHAAEILRRSSPDGRLIGLDQDENALRAAGD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +L + F + D DGV+ D+GVSS Q D G+RGFS+ PL Sbjct: 65 RLAPFGDRVTLVRTNFEHVADVADRLGLGAADGVLMDIGVSSHQFDEGERGFSYHHDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A+ +VN+ +++ R++ GEE+ ASRIA IV+ R+ P +TT L Sbjct: 125 DMRMDRTRPLTAAVLVNEWEEEEIARVIREYGEERWASRIAQFIVRARRQRPIETTGQLV 184 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN+E+ L +GL A + L+ GG L V++FH Sbjct: 185 EIIKAAIPASARREGGHPARRTFQAIRIAVNDELGALERGLEGALRVLRPGGRLAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ FA + + + + +T+K V + +V N RSRSA Sbjct: 245 SLEDRIVKQTFARWAKPCTCPPDLPVCVCGKAPLAEPVTRKPVRASGAEVKANPRSRSAT 304 Query: 311 LRAGMR 316 LRA ++ Sbjct: 305 LRAVVK 310 >gi|315924810|ref|ZP_07921027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pseudoramibacter alactolyticus ATCC 23263] gi|315621709|gb|EFV01673.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pseudoramibacter alactolyticus ATCC 23263] Length = 314 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 8/311 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV 71 G H+ VL ++ IA L G + +D T G GG+S + C+ + +I +D+D +A+ Sbjct: 4 DNQGKHITVLRDEAIAGLGIVRGGIYVDCTLGGGGHSEAICRALGHQGTLIGIDQDQYAL 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 S + +R + + F L+ + + + DG +FDLGVSS Q D +RGFS+ Sbjct: 64 SRAETRLRSQRCHKIFVRNNFVDLETVLDNAGIEKADGFLFDLGVSSFQFDQAERGFSYH 123 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM S +A VVN + +DL RIL GEEK + R+A AIVK R AP Sbjct: 124 HDGPLDMRMDRSRPLTAERVVNTYSQEDLKRILWGYGEEKMSGRVAAAIVKARAQAPITR 183 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + HPA ++FQALRI VN E+ L L++A L GG + V Sbjct: 184 TGQLAEIIKAAYPEKLKRKGHPAKKTFQALRIEVNGELRILNDALKAAIDRLNPGGRICV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLED+LVK+ F ++ + + + IT+K +VP++ ++A NRR+ Sbjct: 244 ITFHSLEDQLVKRLFTEQADPCICPPELPQCVCGRVPTIKKITRKPIVPSETELAANRRA 303 Query: 307 RSAKLRAGMRT 317 RSAKLR R Sbjct: 304 RSAKLRIAERI 314 >gi|217963812|ref|YP_002349490.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23] gi|290892188|ref|ZP_06555184.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-071] gi|263456353|sp|B8DH88|RSMH_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217333082|gb|ACK38876.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23] gi|290558311|gb|EFD91829.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-071] gi|307571615|emb|CAR84794.1| S-adenosyl-methyltransferase [Listeria monocytogenes L99] Length = 312 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|86749109|ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2] gi|123292796|sp|Q2IYL6|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86572137|gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2] Length = 337 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 142/332 (42%), Positives = 194/332 (58%), Gaps = 5/332 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAV 71 + H+PVL + + LL P G + LD TFGAGGYSR + + VIA+DRD A+ Sbjct: 1 MSEARPRHIPVLGPEAVTLLAPRDGGIYLDGTFGAGGYSRLILEAAATRVIAIDRDRSAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQ 128 + G + ++ + +L + FS L + +G V V D+GVSSMQ+D DRGFSF+ Sbjct: 61 AGGFDLVQGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSSMQVDQADRGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G +A+DVV +A+ DL I+ I GEEK + +A A++ R+ AP TT Sbjct: 121 QDGPLDMRMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARAVIAARKEAPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V K +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVASVVRA-KPGQIHPATRTFQALRIFVNEELDELYQALAAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDR+VK F A RS RH+ F +TK+ +VA N R+RS Sbjct: 240 TFHSLEDRIVKTFLAERSRVGGGSRHLPELAQAAPSFTVLTKRPTTAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLR G RT + D P L + + Sbjct: 300 AKLRGGERTAAPAHRPDDLPGWPTLAGVMKAG 331 >gi|319938119|ref|ZP_08012517.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1] gi|319806640|gb|EFW03289.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1] Length = 315 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 8/313 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H+ VLLE+ I LN + +D T G GG+S+ K ++ D+D A+ Sbjct: 1 MFNHISVLLEETIEGLNIKEDGIYVDCTLGGGGHSQEILKRLTTGHLYCFDQDQVAIEVA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + F++ + F ++ + + VDG+VFDLGVSS Q D G+RGFS+ Sbjct: 61 AKRLSQISDHFTIIYSNFKNMKSELNQLGVQKVDGIVFDLGVSSPQFDDGERGFSYNYDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA ++VN +L +I +EK + +IA AI + RQ P +TT + Sbjct: 121 KLDMRMDRNQTLSAYEIVNTYEFNELVKIFYKYADEKFSKQIARAIERHRQEKPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALRI VN+E+ + L + + GG + V++ Sbjct: 181 LVEIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELSVFEKALDDSLDCICVGGRIAVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLED++ K F + + M + FQ ITKK +V ++++ N RS S Sbjct: 241 FHSLEDKICKYTFNEVTKQPQLPMGMPIVPEYLKPRFQKITKKPIVAGEKELEENHRSHS 300 Query: 309 AKLRAGMRTVERS 321 AKLR R E Sbjct: 301 AKLRIIERVYENE 313 >gi|221133797|ref|ZP_03560102.1| S-adenosyl-methyltransferase MraW [Glaciecola sp. HTCC2999] Length = 310 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 175/308 (56%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I L P + +DATFG GG+S +IA DRDP A+ Q+ Sbjct: 6 HTSVLLHECIEGLAIKPDGIYIDATFGRGGHSSYILNALGEHGRLIAFDRDPAAIEAAQK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D +F++ + F+Q+ + VDGV+ DLGVSS Q+D RGFSF + GP Sbjct: 66 FVND--PRFTIVHSAFAQMDEVPLTAGLIDQVDGVLMDLGVSSPQLDDSSRGFSFLRDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +G+SA + A+ +D+ +++ GEEK RIAHAIV R P +T L Sbjct: 124 LDMRMDTSTGVSAEQWLAHADEQDIAQVIKEFGEEKFGKRIAHAIVNTRVHTPINSTLQL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++I + K+ HPATR+FQ +RI++N+E+++L GL++A K LK G L +SFH Sbjct: 184 AAIIAEA-MPVKDKHKHPATRAFQGIRIYINSELDQLRDGLKAAVKLLKPTGRLAAISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F +S +M A V + I K + P+ E+V+ N RSRS Sbjct: 243 SLEDRMVKRFMREQSKGKNVPHNMPILQAEIDADKVLKLI-GKAIKPSDEEVSNNPRSRS 301 Query: 309 AKLRAGMR 316 + LR + Sbjct: 302 SVLRVAEK 309 >gi|169824308|ref|YP_001691919.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328] gi|263447055|sp|B0S0Y9|RSMH_FINM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167831113|dbj|BAG08029.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328] Length = 312 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 165/311 (53%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 HVP+LL + I LN GK+ +D T G G+SR K +I D+D A+ Sbjct: 1 MEFKHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + ++ ++ + F +++ + + + VDG++ D+GVSS QID RGFS+ Sbjct: 61 AKQRLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S SA D+VN + +DL ++ +EK A RIA I R++ P TT Sbjct: 121 ADLDMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTF 180 Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + N + H A ++FQA+RI VN E++ L Q + + L G + + Sbjct: 181 ELVEVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLED++ K F R + + H + IT+K + P++E++ N R+ Sbjct: 241 ITFHSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKEELEQNSRA 300 Query: 307 RSAKLRAGMRT 317 RSAKLR + Sbjct: 301 RSAKLRVAEKI 311 >gi|16804080|ref|NP_465565.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes EGD-e] gi|224498509|ref|ZP_03666858.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes Finland 1988] gi|224501159|ref|ZP_03669466.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-561] gi|254827071|ref|ZP_05231758.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N3-165] gi|284802488|ref|YP_003414353.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578] gi|284995630|ref|YP_003417398.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923] gi|20138988|sp|Q8Y5L7|RSMH_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16411511|emb|CAD00119.1| lmo2041 [Listeria monocytogenes EGD-e] gi|258599454|gb|EEW12779.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N3-165] gi|284058050|gb|ADB68991.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578] gi|284061097|gb|ADB72036.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923] Length = 312 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|149181747|ref|ZP_01860239.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1] gi|148850595|gb|EDL64753.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1] Length = 310 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + +H VLL++ + L+ V +D T G G+S + D+D A+ Sbjct: 1 MFEHTTVLLKETVDGLDIKEDGVYVDCTLGGAGHSEYLVSQLGVTGKLYCFDQDQTAIDH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y ++ + ++ F +++ + + VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLAPYLDRVTFIRSNFRFIKEELAERGVHQVDGVMFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +A +VVNQ + L RI GEEK + +IA I R+ +TT Sbjct: 121 APLDMRMDLEGDLTAHEVVNQWPYEKLVRIFFRYGEEKFSKQIARKIEAAREIKSIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + + HPA R FQA+RI VN+E++ + + L + + LK G + V+ Sbjct: 181 ELVDLIKEGIPAPARRKGGHPAKRVFQAIRIAVNDELDAVEEALEKSIEILKPSGRISVI 240 Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + SG + + +A+ + +T+K ++P++E++ N R+R Sbjct: 241 TFHSLEDRITKTLFKEKASGPDLPHGLPVIPDAYKPELKLVTRKPILPSEEELERNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|46908277|ref|YP_014666.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype 4b str. F2365] gi|254826203|ref|ZP_05231204.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-194] gi|255520499|ref|ZP_05387736.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-175] gi|51316263|sp|Q71XX2|RSMH_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46881548|gb|AAT04843.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype 4b str. F2365] gi|293595444|gb|EFG03205.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-194] Length = 312 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|167854991|ref|ZP_02477765.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755] gi|167853839|gb|EDS25079.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755] Length = 312 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H+ VLL + + L P + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 SDSPKHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +F + + FS + D + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AEANTI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSF 118 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA + + Q +V DL +L GEE+ A RIA A+V +SA + Sbjct: 119 MRDGPLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEK 178 Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++ L + V K+ HPATRSFQA+RI++N+E++EL + L SA L G L Sbjct: 179 ISRTLQLVQIIADVVPFKDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++SFHSLEDR+VK+F +S + + S + + K ++P++ ++ N Sbjct: 239 SIISFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA LR + Sbjct: 299 PRSRSAVLRVAEK 311 >gi|69244718|ref|ZP_00602982.1| methyltransferase [Enterococcus faecium DO] gi|257879362|ref|ZP_05659015.1| methyltransferase [Enterococcus faecium 1,230,933] gi|257881772|ref|ZP_05661425.1| methyltransferase [Enterococcus faecium 1,231,502] gi|257890188|ref|ZP_05669841.1| methyltransferase [Enterococcus faecium 1,231,410] gi|257893516|ref|ZP_05673169.1| methyltransferase [Enterococcus faecium 1,231,408] gi|260558804|ref|ZP_05830993.1| methyltransferase [Enterococcus faecium C68] gi|293553181|ref|ZP_06673818.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039] gi|293560478|ref|ZP_06676970.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162] gi|293568304|ref|ZP_06679628.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071] gi|294621599|ref|ZP_06700764.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317] gi|314937875|ref|ZP_07845191.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04] gi|314941366|ref|ZP_07848259.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C] gi|314950125|ref|ZP_07853411.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082] gi|314951334|ref|ZP_07854388.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A] gi|314992835|ref|ZP_07858236.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B] gi|314997995|ref|ZP_07862890.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01] gi|68196309|gb|EAN10738.1| methyltransferase [Enterococcus faecium DO] gi|257813590|gb|EEV42348.1| methyltransferase [Enterococcus faecium 1,230,933] gi|257817430|gb|EEV44758.1| methyltransferase [Enterococcus faecium 1,231,502] gi|257826548|gb|EEV53174.1| methyltransferase [Enterococcus faecium 1,231,410] gi|257829895|gb|EEV56502.1| methyltransferase [Enterococcus faecium 1,231,408] gi|260075263|gb|EEW63576.1| methyltransferase [Enterococcus faecium C68] gi|291589016|gb|EFF20840.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071] gi|291598764|gb|EFF29816.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317] gi|291602591|gb|EFF32806.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039] gi|291605626|gb|EFF35068.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162] gi|313588007|gb|EFR66852.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01] gi|313592639|gb|EFR71484.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B] gi|313596551|gb|EFR75396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A] gi|313599789|gb|EFR78632.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C] gi|313642733|gb|EFS07313.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04] gi|313643566|gb|EFS08146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082] Length = 319 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 171/312 (54%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y + + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S +SA V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++ N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELTENNR 302 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 303 SRSAKLRIAEKI 314 >gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 332 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 189/313 (60%), Gaps = 8/313 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 H+PVLL++VI L+P G + +D TFGAGGYSR+ + + VIA DRDP A+ G Sbjct: 7 SAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GP Sbjct: 67 ALVEKYKGRLRLVNDCFSNIDHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGP 126 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P TT L+ Sbjct: 127 LDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G L VV+FHS Sbjct: 184 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHS 243 Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F +G+ RH VF S + V + ++A N R+RSA L Sbjct: 244 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATL 303 Query: 312 RAGMRTVERSIED 324 RA RT ED Sbjct: 304 RAVYRTETPFSED 316 >gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 332 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 190/313 (60%), Gaps = 8/313 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 H+PVLL++VI L+P G + +D TFGAGGYSR+ + + VIA DRDP A+ G Sbjct: 7 SAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66 Query: 76 ETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GP Sbjct: 67 SLVEKYKGRLRLVNDCFSNIGHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGP 126 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P TT L+ Sbjct: 127 LDMRMAQTGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK+ G L VV+FHS Sbjct: 184 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKSKGCLAVVTFHS 243 Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F +G+ RH VF S + V + ++A N R+RSA L Sbjct: 244 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATL 303 Query: 312 RAGMRTVERSIED 324 RA RT ED Sbjct: 304 RAVYRTETPFSED 316 >gi|297583942|ref|YP_003699722.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10] gi|297142399|gb|ADH99156.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10] Length = 317 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H VL E+ + L PG V +D T G GG+S + +IA D+D A++ Sbjct: 1 MFEHDTVLREETVEGLAIRPGGVYVDCTLGGGGHSERILQELGEDGKLIAFDQDESAIAH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ Y ++ + + F L++ + + VDG++FDLGVSS Q D +RGFS++ Sbjct: 61 AKERLKPYGDRLHIVKRNFRFLKEELEKLGYREVDGIIFDLGVSSPQFDVPERGFSYRFD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +A V+N+ + +DL +I GEEK A IA I K R++ P +TT Sbjct: 121 APLDMRMDQTSELTAHKVINEWSFEDLMKIFSRYGEEKFAKYIARKIEKYRETKPVETTF 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQA+RI VN+E+ + L A GG + V+ Sbjct: 181 ELVEIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELGVFEKALEDAVTMTAPGGRIAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S R M + V + I +K + +++ N RS Sbjct: 241 TFHSLEDRICKQLFRKLSQPPELPRGMPVVPEGYEPVLKLINRKPITANVDELDDNHRSH 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255] gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255] Length = 337 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 143/338 (42%), Positives = 205/338 (60%), Gaps = 9/338 (2%) Query: 9 MS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDR 66 MS + + H+PVLL ++ + P + +D TFGAGGYSR+ G++ + A+DR Sbjct: 1 MSIAQSYPPSSPHIPVLLTPILDSVKPIS-GIWVDGTFGAGGYSRAILDAGADTLYAIDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123 DP + ++ +DY + L TFS L +V + +DGVV D+GVSSMQ+D +R Sbjct: 60 DPEVFARAKKWAKDYDGRLKLIHGTFSDLDTHVKNAGTDLIDGVVLDIGVSSMQLDQAER 119 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF K GPLDMRM SG+SA+D+VN K L ++ + GEE+ + RIA IVK R++ Sbjct: 120 GFSFMKDGPLDMRMGQSGMSAADIVNSVEEKVLADLIYLYGEERASRRIARNIVKSRENL 179 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F+TT L +I+ ++ K + HPATR+FQALRI VN+E+ +L GLR+AE L+ GG Sbjct: 180 KFETTFQLVKVIEASLPRPKPGQTHPATRTFQALRIAVNDELGQLVSGLRAAENILREGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 LL VV+FHSLEDR+VK+F +RSG R+ A F+ I +K + ++++ Sbjct: 240 LLAVVTFHSLEDRIVKRFIQARSGNNPRGNRYQPEKTNDIATFEKIGRKAIAANKDEINS 299 Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQF 339 N R+RSAKLR R S E +F + LP+ L Q Sbjct: 300 NPRARSAKLRLARRLNTTSGEFSAFDIGLPK-FNLGQL 336 >gi|238022305|ref|ZP_04602731.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147] gi|237866919|gb|EEP67961.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147] Length = 324 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 170/324 (52%), Gaps = 12/324 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ A H+ VLL + + LN + +D TFG GG+SR ++ D Sbjct: 1 MNLAAKPKSFQHITVLLNEAVDALNIQENGIYVDGTFGRGGHSRLILSKLGEKGRLVVFD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 +DP A++ ++ + + S+ FS Q + + +DG +FDLG+SS QID Sbjct: 61 KDPQAIAVARD-LAAQDARVSVVHNGFSHFQAALDELGVAKIDGALFDLGISSPQIDDAS 119 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G SA+D + A+ ++ ++ GEE+ + IA AIV +R Sbjct: 120 RGFSFRFDAPLDMRMDTTRGQSAADWLAVASEDEINEVIKNYGEERFSRAIARAIVAQRG 179 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT L+ + + V ++ PATR+FQA+RIF+N E++E+ L A + L Sbjct: 180 ETPIDTTSKLAKIAAQCV-RTRERGQDPATRTFQAIRIFINRELDEIQAVLPQAVERLNL 238 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDRLVK+F + + + ++ ++I K + + E+ Sbjct: 239 GGRLAVIAFHSLEDRLVKQFIRQYATHAPLPKWAMVREADLPQPPLRAI-GKAIKASAEE 297 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 VA N R+RSA LR RT R Sbjct: 298 VAANPRARSAVLRVAERTAGRFDF 321 >gi|254831717|ref|ZP_05236372.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 10403S] Length = 312 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I + R+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERHREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|187934997|ref|YP_001886637.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str. Eklund 17B] gi|263446060|sp|B2TS30|RSMH_CLOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187723150|gb|ACD24371.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str. Eklund 17B] Length = 310 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 H+ VLL + + L+ + +D T G G+S + SN +I +D+D A+ Sbjct: 1 MEFKHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++ ++ + F + + + + VDG++ DLGVSS Q+D G RGFS+ K Sbjct: 61 AAKERLKRFEN-VKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + SA ++VN+ + +L +I+ GEE+ A RI++ IV RR P +TT Sbjct: 120 DAPLDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN+E++ L Q + LK GG + + Sbjct: 180 MELVDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + R + I++K + PT+E+V N RS Sbjct: 240 ITFHSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLISRKGIEPTKEEVEENPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIIEK 309 >gi|332288560|ref|YP_004419412.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179] gi|330431456|gb|AEC16515.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179] Length = 321 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 20/323 (6%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + ++ H VLL + + L P + +D TFG GG+SR + +IA+DR Sbjct: 1 MEQVTYSDPSHFTVLLNEAVDGLAIKPNGIYIDGTFGRGGHSRRILSLLGEHGRLIAIDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGD 122 DP A++ Q +FS+ FS++ + +DG++ DLGVSS Q+D + Sbjct: 61 DPQAIAAAQSI---QDPRFSIEHHNFSEINEICEKYQLIGKIDGILLDLGVSSPQLDQAE 117 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA+ + Q + DL +L GEE+ A RIA IV+ Q Sbjct: 118 RGFSFMQDGPLDMRMDTTKGLSAAQWLQQVSESDLAWVLKTFGEERFAKRIARNIVQFNQ 177 Query: 182 SAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 A T+ L+ +Q K HPATRSFQA+RIF+N+E+EEL + L +A Sbjct: 178 QAKLNGTEPLTRTLQLAQLIAQSIPLKEKHKHPATRSFQAIRIFINSELEELEKILTAAI 237 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVV 293 L G L ++SFHSLEDRLVK+F +S R + + + I K + Sbjct: 238 DVLAPQGRLSIISFHSLEDRLVKRFMKKQSKGDDIPRGLPLTEDQIERNQKLKII-GKAI 296 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+++++A N RSRSA LR R Sbjct: 297 MPSEQEIAVNSRSRSAVLRVAER 319 >gi|325684346|gb|EGD26515.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 314 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 165/313 (52%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Sbjct: 1 MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 Q D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGF Sbjct: 61 AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGF 120 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++ LDMRM A +VNQ + K L +L G+EK + +IA IV+RR+ P Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKP 180 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I++ + + + + HPA +SFQA+R+ VN+E++ L L A L GG Sbjct: 181 IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++F S ED++VK+ F S + + + + +K + ++E++A N Sbjct: 241 RISVITFQSSEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN 300 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 301 NRSHSAKLRVAEK 313 >gi|116873471|ref|YP_850252.1| S-adenosyl-methyltransferase MraW [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461323|sp|A0AKE1|RSMH_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116742349|emb|CAK21473.1| S-adenosyl-methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 312 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKMKLADYSDKVTFIKANFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPELPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|315283083|ref|ZP_07871351.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120] gi|313613270|gb|EFR87146.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120] Length = 312 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AEIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A +VN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTIVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|227550453|ref|ZP_03980502.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330] gi|257897144|ref|ZP_05676797.1| methyltransferase [Enterococcus faecium Com12] gi|293377368|ref|ZP_06623572.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1] gi|227180354|gb|EEI61326.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330] gi|257833709|gb|EEV60130.1| methyltransferase [Enterococcus faecium Com12] gi|292644060|gb|EFF62166.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1] Length = 319 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKSDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y + + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 303 SRSAKLRIAEKI 314 >gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum marinum IMCC1322] gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum marinum IMCC1322] Length = 334 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 150/329 (45%), Positives = 195/329 (59%), Gaps = 22/329 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 MS + H VLL +V+ L P GKV LDATFG GGYSR+ VIA+DRD Sbjct: 1 MSGQML-----HQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRD 55 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---------------KGVDGVVFDLG 112 P A++ GQ+ + +YK +F+L + FS++Q V +DG FDLG Sbjct: 56 PDAIARGQKMVAEYKPRFTLVEGCFSEMQSLVQSALVSTGSGSTSHADVPVLDGAAFDLG 115 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRI 172 V S Q+D DRGFSF++ GPLDMRMS SGISA+D+V D+ +IL GEEK + RI Sbjct: 116 VCSTQLDQADRGFSFRQDGPLDMRMSQSGISAADIVMTHEEHDIAQILWEYGEEKASRRI 175 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 A AIVK R +T L+++I + + +I PATRSFQALRI+VN E++EL L Sbjct: 176 AKAIVKARSETAISSTSQLAAIIHSVMPAKRPGQIDPATRSFQALRIYVNRELDELKSAL 235 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKK 291 ++E LK GG+L VVSFHSLEDR+VK+F ASRS RH PSN F+ +T+K Sbjct: 236 TTSEAMLKPGGILAVVSFHSLEDRIVKRFLASRSQIASQPSRHRPPSNGPAPTFELLTRK 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 + + N R+RSAKLR MRT Sbjct: 296 ALQAGTREREDNSRARSAKLRVAMRTNAP 324 >gi|300811319|ref|ZP_07091816.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497683|gb|EFK32708.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 314 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Sbjct: 1 MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 Q D + + L FS L++ + + DG+ +DLGVSS Q+D +RGF Sbjct: 61 AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGF 120 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++ LDMRM A +VNQ + K L +L G+EK + +IA IV+RR++ P Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKP 180 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I++ + + + + HPA +SFQA+R+ VN+E++ L L A L GG Sbjct: 181 IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++F SLED++VK+ F S + + + + +K + ++E++A N Sbjct: 241 RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN 300 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 301 NRSHSAKLRVAEK 313 >gi|313114876|ref|ZP_07800375.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii KLE1255] gi|310622826|gb|EFQ06282.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii KLE1255] Length = 321 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 111/315 (35%), Positives = 169/315 (53%), Gaps = 8/315 (2%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIAL 64 +A +H+PVLL + + L+ P LD T G G+SR + G +I+L Sbjct: 6 QAAFDPASFEHIPVLLNECLEGLSIDPAGTYLDGTAGGAGHSRQIALRLDAEKGGRLISL 65 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 D+DP AV + + ++ Q + + V+G + DLGVSS Q+D R Sbjct: 66 DQDPDAVQTARARLAGLPATVVQINFRYAGQALESLGIDKVNGALLDLGVSSHQLDDAAR 125 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFS++ PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R+++ Sbjct: 126 GFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPFAWQIAGRIVEARENS 185 Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L G Sbjct: 186 PIETTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPG 245 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G L V++FHSLEDRLVK F S A + IT+K + +++ Sbjct: 246 GRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANSQELE 305 Query: 302 FNRRSRSAKLRAGMR 316 NRRSRSA LR + Sbjct: 306 ENRRSRSAHLRVLEK 320 >gi|313123436|ref|YP_004033695.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279999|gb|ADQ60718.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 314 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Sbjct: 1 MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 Q D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGF Sbjct: 61 AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGF 120 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++ LDMRM A +VNQ + K L +L G+EK + +IA IV+RR+ P Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKP 180 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I++ + + + + HPA +SFQA+R+ VN+E++ L L A L GG Sbjct: 181 IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++F SLED++VK+ F S + + + + +K + ++E++A N Sbjct: 241 RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN 300 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 301 NRSHSAKLRVAEK 313 >gi|23012863|ref|ZP_00052852.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Magnetospirillum magnetotacticum MS-1] Length = 319 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 140/315 (44%), Positives = 191/315 (60%), Gaps = 8/315 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSC 73 ++ H+PVLL +VIA L P G +D TFGAGGYSR+ +V A+DRDP AV+ Sbjct: 2 SSLPPHIPVLLTEVIAALAPRDGGAYVDGTFGAGGYSRAILSAAACHVHAIDRDPSAVAR 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ +FS+ + F + + + VDG+ D+GVSSMQID +RGFSF K Sbjct: 62 GKTLEEASAGRFSMIEGRFGDMAALLRERGVNQVDGIALDIGVSSMQIDQPERGFSFAKD 121 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN +L I+ GEE+ + R+A AIV+ R+ F+ T + Sbjct: 122 GPLDMRMETKGPSAADMVNDTPEGELANIIYRYGEERLSRRVAKAIVEARRIKRFERTGE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I++ V S + I PATR+FQALRI VN+E+ EL +GL +AE L GG L VV+F Sbjct: 182 LAEVIRRVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAEHLLAPGGHLAVVTF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F SRSG+ +P N A F +++K + P QE+ N R+R Sbjct: 241 HSLEDRVVKSFLKSRSGEASRPSRHVPQAQDNGPAASFTLLSRKAIAPGQEESRANPRAR 300 Query: 308 SAKLRAGMRTVERSI 322 SAKLRA RT + Sbjct: 301 SAKLRAAARTEAPAW 315 >gi|288553170|ref|YP_003425105.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4] gi|288544330|gb|ADC48213.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4] Length = 311 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 163/309 (52%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV VL E+ + L P + +D T G G+S + ++ A D+D A+S Sbjct: 1 MFTHVTVLKEESVNGLAIKPDGIYVDCTLGGAGHSSLILEQLNDEGHLYAFDQDDTALSN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + YK +F+L ++ F L++ + VDGV+FDLGVSS Q+D +RGFS+ + Sbjct: 61 AEEVLAPYKGKFTLIRSNFRFLREELAKHGISKVDGVLFDLGVSSPQLDEAERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A VVN+ L I+ GEEK A +IA I RR+ +TT Sbjct: 121 AALDMRMDQTAPLTAHQVVNEWEFNRLVSIISRYGEEKFAKQIARKIEARREIKTIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQA+RI VN+E+ + L A G + V+ Sbjct: 181 ELVEIIKDAIPAPARRTGGHPAKRTFQAIRIAVNDELGSFEEALEDAITITNPKGRICVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F +S + + IT+K +V E++ N R+R Sbjct: 241 TFHSLEDRLCKEIFKEKSKGPDLPPGLPVIPEGFEPELKLITRKPIVAGNEELTANNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|160895291|ref|ZP_02076062.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50] gi|156862984|gb|EDO56415.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50] Length = 314 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 175/310 (56%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ I LN P V +D T G G+SR K ++I +D+D A++ Sbjct: 1 MEFKHTSVLLDETIENLNIKPNGVYMDGTLGGAGHSREIAKRLGSDGHLIGIDQDGEAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + +Y ++ ++ + + + + + VDG++ DLGVSS Q+D DRGF+++ Sbjct: 61 TAKERLAEYGDRITVVRDNYQNFKSILDELNISQVDGILLDLGVSSYQLDNADRGFTYRV 120 Query: 130 SGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + D+VN ++L IL GEE+ A IA+ IVK R++ +TT Sbjct: 121 DAPLDMRMDDRQTKTAKDIVNGYTEQELFHILKEYGEERFAKSIAYHIVKYRENKEIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 ++L+ +I+ ++ +N + HP+ ++FQA+RI +N+E+E L + LK GG L + Sbjct: 181 EELNDIIRGSIPAKVRNAQGHPSKQTFQAIRIELNHELEVLTNSIDGMIDCLKPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + + IT+K ++PT+E++ N RS Sbjct: 241 ITFHSLEDRIVKNAFRKNENPCICPPNFPVCTCGRKSKGKVITRKPILPTEEEMEINSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR + Sbjct: 301 KSAKLRVFEK 310 >gi|219870383|ref|YP_002474758.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis SH0165] gi|263456048|sp|B8F3A8|RSMH_HAEPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219690587|gb|ACL31810.1| S-adenosyl-methyltransferase MraW involved in cell envelope biogenesis [Haemophilus parasuis SH0165] Length = 312 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 169/313 (53%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H+ VLL + + L P + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 SDSPKHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +F + + FS + D + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AEANTI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSF 118 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA + + Q +V DL +L GEE+ A RIA A+V +SA + Sbjct: 119 MRDGPLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEK 178 Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++ L V K+ HPATRSFQA+RI++N+E++EL + L SA L G L Sbjct: 179 ISRTLQLAQIIADVVPFKDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++SFHSLEDR+VK+F +S + + S + + K ++P++ ++ N Sbjct: 239 SIISFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA LR + Sbjct: 299 PRSRSAVLRVAEK 311 >gi|16801213|ref|NP_471481.1| S-adenosyl-methyltransferase MraW [Listeria innocua Clip11262] gi|20139025|sp|Q929X6|RSMH_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16414661|emb|CAC97377.1| lin2147 [Listeria innocua Clip11262] Length = 312 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +Y ++ + ++ F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L +A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKYLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|188587754|ref|YP_001921594.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str. Alaska E43] gi|251777689|ref|ZP_04820609.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|263446056|sp|B2V4W0|RSMH_CLOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188498035|gb|ACD51171.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str. Alaska E43] gi|243082004|gb|EES47894.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 310 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 170/310 (54%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 H+ VLL + + L+ + +D T G G+S + SN +I +D+D A+ Sbjct: 1 MEFKHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++ ++ + F + + + + VDG++ DLGVSS Q+D G RGFS+ K Sbjct: 61 AAKERLKRFEN-VKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + SA ++VN+ + +L +I+ GEE+ A RI++ IV RR P +TT Sbjct: 120 DAPLDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN+E++ L Q + LK GG + + Sbjct: 180 MELVDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + R + +++K + PT+E+V N RS Sbjct: 240 ITFHSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLVSRKGIEPTKEEVEENPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIIEK 309 >gi|154252855|ref|YP_001413679.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans DS-1] gi|262824741|sp|A7HVT9|RSMH_PARL1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154156805|gb|ABS64022.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans DS-1] Length = 339 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 148/335 (44%), Positives = 209/335 (62%), Gaps = 6/335 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67 MS ++ H+PV+L V+ +L P G V +D TFGAGGY+R+ V+A+DRD Sbjct: 1 MSDNGQNSASPHIPVMLADVLDVLKPRDGGVYVDGTFGAGGYTRAILGSADCAVLAIDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 P A+ G+ ++ + +L + F ++ V + VDGVV D+GVSSMQ+D +RG Sbjct: 61 PTAILRGRALATEFAGRLTLIEGRFGDMKRLVRELGHGTVDGVVLDIGVSSMQLDQAERG 120 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQ+ GPLDMRM G SA+DVVN + DL RI+ + GEEK+A +A AIV RQ+A Sbjct: 121 FSFQQDGPLDMRMGGEGPSAADVVNHFDEADLARIIAVYGEEKRARAVARAIVAARQTAE 180 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L+ L+ ++ +RIHPATR+FQALRIFVN+E+ ELA+GL AE L GG Sbjct: 181 LHRTLELADLVASVIHRKPQDRIHPATRTFQALRIFVNDELGELARGLSGAEDLLHEGGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L VV+FHSLEDR+VK+F +R+G+ A R+M + F+ I K + ++E+V N Sbjct: 241 LAVVAFHSLEDRIVKRFLTARTGRAGRANRYMPERDEVAPSFREIAHKAMKASEEEVEIN 300 Query: 304 RRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLS 337 R+RSAKLRA RT ++ D + + +PTL Sbjct: 301 VRARSAKLRAAERTAAPALPLDLAALGFRAVPTLD 335 >gi|325679058|ref|ZP_08158652.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8] gi|324109182|gb|EGC03404.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8] Length = 319 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 164/309 (53%), Gaps = 4/309 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 HVPVLLE+ I L+ P + D T G G+S+ K +I++DRDP AV+ E Sbjct: 5 HVPVLLEECIEGLDIKPDGIYCDGTAGGAGHSKEIAKRLTTGRLISVDRDPEAVAVATER 64 Query: 78 MRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++ + + G DG++ DLGVSS Q+D +RGFS+ PLDMR Sbjct: 65 LAGLPATVVRGNYSELDEIFERLGLSGADGILMDLGVSSYQLDNAERGFSYHADAPLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G+SA DVVN + K L RI+ GEEK + IA IV+ RQ P +TT +L+ +I+ Sbjct: 125 MSSEGLSARDVVNGYDEKTLARIIFEYGEEKYSRSIARRIVEARQVRPIETTLELAEIIK 184 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 V +P ++FQA+RI VN E+E L+ L A L GG L +++FHSLEDR Sbjct: 185 TGVPQKVRREKNPCKKTFQAIRIEVNAELEHLSVALDKAFDLLNVGGRLCIITFHSLEDR 244 Query: 257 LVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 LVK+ F + + +T+K + PT+ + N+R+ SAKLR Sbjct: 245 LVKQRFRGFCQGCVCPPDFPVCVCGRTPRGRLVTRKPIEPTERENTENKRAHSAKLRIIE 304 Query: 316 RTVERSIED 324 + E + Sbjct: 305 KIKEEKDPN 313 >gi|163738706|ref|ZP_02146120.1| methyltransferase [Phaeobacter gallaeciensis BS107] gi|163741583|ref|ZP_02148974.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10] gi|161385317|gb|EDQ09695.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10] gi|161388034|gb|EDQ12389.1| S-adenosyl-L-methionine-dependent methyltransferase [Phaeobacter gallaeciensis BS107] Length = 335 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 157/328 (47%), Positives = 209/328 (63%), Gaps = 6/328 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M++ + G HVPVLL ++ + P LD TFGAGGYSR + G+ +VI +DRD Sbjct: 1 MTTDRPTSTGPHVPVLLRPLLKAVAPVS-GRWLDGTFGAGGYSRGLLEAGADHVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + DY + +L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAESWIGDYAGRLTLQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+V + + L IL + GEE+ + RIA AIVK R AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFLFGEERASRRIARAIVKARTEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + SK + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLQLAGIIEHCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK A R+ P+ F +T+K V P E++A N RS Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEVEETPSQFALVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333 RSA+LR G RT IE + + +P+L Sbjct: 298 RSARLRVGRRTEATPIEISAKDIGMPQL 325 >gi|297588285|ref|ZP_06946928.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516] gi|297573658|gb|EFH92379.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516] Length = 312 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 162/311 (52%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 HVP+LL + I LN GK+ +D T G G+SR K +I D+D A++ Sbjct: 1 MEFKHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALTV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +++Y ++ + F ++ + + VDG++ D+GVSS QID RGFS+ Sbjct: 61 AKERLKEYGDKVIFIKDNFKNIKSDLQNIGIEKVDGILMDIGVSSYQIDEDSRGFSYMHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A D+VN + +DL I+ EEK A RIA I R+ P TT Sbjct: 121 AVLDMRMDQTNPITAKDIVNTYSQEDLENIIFKYSEEKWAKRIAEFICNEREVKPINTTF 180 Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + N + H A ++FQA+RI VN E++ L Q + L G + + Sbjct: 181 ELVEVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDCIDLLNPEGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLED++ K F R + + H + IT+K + P+ E++ N R+ Sbjct: 241 ITFHSLEDKICKDIFKQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSTEELKQNSRA 300 Query: 307 RSAKLRAGMRT 317 RSAKLR + Sbjct: 301 RSAKLRVAEKI 311 >gi|220931744|ref|YP_002508652.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168] gi|263456084|sp|B8CWI8|RSMH_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219993054|gb|ACL69657.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168] Length = 311 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 174/312 (55%), Gaps = 10/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H PVLL++ + L + +DAT G GG++ K ++ VI +DRD A+ Sbjct: 1 MLEHKPVLLKESLDYLKCKENGIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIES 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++ Y F+ + + K VDG++FDLGVSS Q D +RGFS++K Sbjct: 61 VKKRLKKYS-SLRTVHDNFTNIPFILEQFNIKAVDGMLFDLGVSSPQFDNPERGFSYRKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + +A +VN + ++LT I GEE+ ASRIA+ I+K RQ P +TT Sbjct: 120 GPLDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKSRQHKPIKTTL 179 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+++I+ + S + HPA R+FQALRI N+E+ L + + K LK GG + ++ Sbjct: 180 QLTTIIKDAIPASARRKGGHPARRTFQALRIATNDELNILKKTINHVVKFLKPGGRICII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VKK F + + H + ITKK V P + +V N R+R Sbjct: 240 SFHSLEDRIVKKTFRELARDCVCPPDFPECVCDHKRKLKIITKKPVKPGENEVENNPRAR 299 Query: 308 SAKLRAGMRTVE 319 SA+LR R + Sbjct: 300 SARLRVAERVLN 311 >gi|312622933|ref|YP_004024546.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kronotskyensis 2002] gi|312203400|gb|ADQ46727.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kronotskyensis 2002] Length = 307 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 126/309 (40%), Positives = 188/309 (60%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN +IA+DRD A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + + +DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRKLEAYKN-VKIVHSSFSKVDEVLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN + +DL RI+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNYYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DLS LI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +S Sbjct: 180 DLSRLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|329766778|ref|ZP_08258308.1| ribosomal RNA small subunit methyltransferase H [Gemella haemolysans M341] gi|328839289|gb|EGF88871.1| ribosomal RNA small subunit methyltransferase H [Gemella haemolysans M341] Length = 311 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74 + H VLL + + LN + +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLNEAVEGLNIIEDGIYVDCTLGGAGHSLEILKQLKNGKLYAFDQDNIALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +Y ++ ++ F L++ + + GV GV++DLGVSS Q+D +RGFS+ Sbjct: 61 KNKLAEYSDKVVFIKSNFVNLKEKLAEHGVHEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA +VVN+ + DL +I GEE + +IA I K+R+ P +TT + Sbjct: 121 KLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A +K GG + V++ Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S + ++ I + + IT+K + P+ ++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYAKAKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVAE 307 >gi|226224647|ref|YP_002758754.1| hypothetical protein Lm4b_02062 [Listeria monocytogenes Clip81459] gi|254854022|ref|ZP_05243370.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-503] gi|254933469|ref|ZP_05266828.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262] gi|300765476|ref|ZP_07075457.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N1-017] gi|263456339|sp|C1KWZ4|RSMH_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225877109|emb|CAS05821.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607414|gb|EEW20022.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-503] gi|293585031|gb|EFF97063.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262] gi|300513787|gb|EFK40853.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N1-017] gi|332312491|gb|EGJ25586.1| Ribosomal RNA small subunit methyltransferase H [Listeria monocytogenes str. Scott A] Length = 312 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|312794111|ref|YP_004027034.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181251|gb|ADQ41421.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kristjanssonii 177R1B] Length = 307 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 193/309 (62%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + + +DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRRLEGYKN-IKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DV+N + +DL RI+ GEE+ A RIA AIV+RR++ P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LSSLI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +S Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + + ITKK +VP++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAQKV 307 >gi|56696072|ref|YP_166426.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3] gi|68565435|sp|Q5LU79|RSMH_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56677809|gb|AAV94475.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3] Length = 331 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 151/329 (45%), Positives = 208/329 (63%), Gaps = 7/329 (2%) Query: 9 MS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66 MS +A + H+PVLL ++A + P + LD TFGAGGY+R G+ VIA+DR Sbjct: 1 MSRTAAPPSDDPHIPVLLRPLLAAVAPVS-GIWLDGTFGAGGYTRGLLAAGADRVIAVDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A +DY ++ + Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFS Sbjct: 60 DPLAFELAAGWAKDYGDRLVMQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFS 117 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F K GPLDMRMS G SA+D+VN A DL IL GEE+ + RIA AIVK R AP + Sbjct: 118 FMKDGPLDMRMSQEGPSAADLVNTATEADLADILFHYGEERASRRIARAIVKARAEAPIE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L++L++ + K + HPATRSFQALRI VN E +EL +GL +AE+ALK GG L Sbjct: 178 TTLQLAALVESCLPRPKPGQSHPATRSFQALRIAVNAEYDELFEGLMAAERALKPGGKLA 237 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 VV+FHS+EDR+VK+F +R+G A R+ + F+ +++K + P +++A N R Sbjct: 238 VVTFHSIEDRMVKRFLQARAGRSGRANRYAPETVEDAPQFELLSRKAIGPDDQELAENPR 297 Query: 306 SRSAKLRAGMRTVERSIE-DDSFVHLPRL 333 +RSAKLR +RT + D + +P+L Sbjct: 298 ARSAKLRVALRTDAPAGAVDAKSIGMPQL 326 >gi|328472688|gb|EGF43546.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 220] Length = 315 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 170/312 (54%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + Sbjct: 301 SAKLRVIEKLSN 312 >gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ZM4] gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ZM4] Length = 332 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 136/312 (43%), Positives = 189/312 (60%), Gaps = 8/312 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PVLL++VI L+P G + +D TFGAGGYSR+ + + VIA DRDP A+ G Sbjct: 8 APHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAS 67 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GPL Sbjct: 68 LVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGPL 127 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P TT L+ Sbjct: 128 DMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLAK 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G L VV+FHSL Sbjct: 185 VIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHSL 244 Query: 254 EDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F +G+ RH VF S + V + ++A N R+RSA LR Sbjct: 245 EDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATLR 304 Query: 313 AGMRTVERSIED 324 A RT ED Sbjct: 305 AVYRTETPFSED 316 >gi|312128123|ref|YP_003992997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor hydrothermalis 108] gi|311778142|gb|ADQ07628.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor hydrothermalis 108] Length = 307 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + +DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRRLEAYKN-IKIVHSSFSKVDEVLESLGIAKIDGILFDFGVSSLQLDKQERGFSYSKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN + +DL RI+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DLSSLI V K+ HPA R+FQA+RI VN E+EE+ L + LK+GG + +S Sbjct: 180 DLSSLISSLVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKVALEKSLGFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + + ITKK +VP++E++ NRRS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKQLEIITKKPIVPSKEEIERNRRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAQKV 307 >gi|138894646|ref|YP_001125099.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans NG80-2] gi|196247745|ref|ZP_03146447.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16] gi|263455979|sp|A4IM00|RSMH_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134266159|gb|ABO66354.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans NG80-2] gi|196212529|gb|EDY07286.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16] Length = 310 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + LN P V +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLNVRPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + Y+EQ F LQ+ + VDG++FDLGVSS Q+D +RGFS+Q Sbjct: 61 ASERLARYREQVQFINRNFRFLQEELSALGIHAVDGILFDLGVSSPQLDEPERGFSYQHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A+++VN+ ++L RI GEEK + ++A I + R+ P +TT Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRKRPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ + HPA R FQALRI VN+E+E + L A + L GG + V+ Sbjct: 181 ELVEVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + + + V + ITKK VVP+ E++ N R+R Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPVVPSAEELERNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|313637016|gb|EFS02589.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL S4-171] Length = 312 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + + VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNEHGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|313622989|gb|EFR93285.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL J1-023] Length = 312 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +Y ++ + ++ F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAEYSDKVTFIKSNFRYMKETLNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L +A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|47093593|ref|ZP_00231351.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b H7858] gi|47018017|gb|EAL08792.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b H7858] gi|328466075|gb|EGF37248.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 1816] Length = 312 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A++ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAINN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|18310847|ref|NP_562781.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens str. 13] gi|20138978|sp|Q8XJ96|RSMH_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|18145529|dbj|BAB81571.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 310 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 HV VLL++ I LN + +D T G G+S +I D+D A+ Sbjct: 1 MEFKHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIRFDQDKDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + Sbjct: 61 AAGERLKDYKN-VTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQ 119 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA ++VN + ++L RI+ GEEK A RIA IVK R+ +TT Sbjct: 120 DAPLDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN E+E +++ + K L GG + + Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + I++K + ++E++ FN RS Sbjct: 240 ITFHSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIIEK 309 >gi|83942761|ref|ZP_00955222.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36] gi|83846854|gb|EAP84730.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36] Length = 330 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 146/331 (44%), Positives = 198/331 (59%), Gaps = 6/331 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS H PVLL ++A + P LD TFGAGGY+R G+ V+A+DRD Sbjct: 1 MSGPSDTPSAPHTPVLLRPLLAAVAPVS-GRWLDGTFGAGGYTRGLLDAGAAQVVAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q DY ++ + + FS++ DY D +DG+V DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV+ R+ AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L++ + SK + HPATRSFQALRI VNNE EL GL +AE+ALK GG L V Sbjct: 178 TLALAGLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G A F+ + +K + P +++ N RS Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 297 Query: 307 RSAKLRAGMRTVERSIEDD-SFVHLPRLPTL 336 RSAKLR +RT + D + +P + L Sbjct: 298 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGL 328 >gi|312876343|ref|ZP_07736328.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor lactoaceticus 6A] gi|311796837|gb|EFR13181.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor lactoaceticus 6A] Length = 307 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 192/309 (62%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + + +DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRRLEGYKN-IKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DV+N + +DL RI+ GEE+ A RIA AIV+RR++ P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LSSLI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +S Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK FF S + + + + + ITKK +VP++E++ N+RS S Sbjct: 239 FHSLEDRIVKGFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAQKV 307 >gi|313607742|gb|EFR83963.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL F2-208] Length = 312 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKSDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|302389508|ref|YP_003825329.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM 16646] gi|302200136|gb|ADL07706.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM 16646] Length = 313 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 173/310 (55%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H PVLLE+ I LL+P PG V +DAT G GG+ K VI +DRD AV Sbjct: 1 MEFYHKPVLLEETINLLDPKPGGVYVDATLGGGGHFSEILKRVGENGTVIGIDRDEDAVV 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++ F ++ V +GVDGV+FDLGVSS Q+D RGFS+ K Sbjct: 61 NARERFSQSPAA-TIVHDNFKNIKRIVYSLGLEGVDGVIFDLGVSSYQLDEESRGFSYIK 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +A DVVN+ +L +I+ GEE+ A RIA I ++R+ P +TT Sbjct: 120 DAPLDMRMDRNQDLTAKDVVNKMTKSELAKIIKEYGEERWADRIAEFICEKRKKKPIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQALRI+VN E+E L+ L+ A L GG + V Sbjct: 180 GELVEIIKAAIPARARRGGPHPAKRTFQALRIYVNGELEILSASLKDAVDILNPGGRICV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + + +T K V PTQ+++ N R+ Sbjct: 240 ITFHSLEDRIVKHTFRELAKGCTCPKDSPLCTCKSERALKILTPKPVCPTQDEIDANPRA 299 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 300 RSAKLRACEK 309 >gi|56419646|ref|YP_146964.1| S-adenosyl-methyltransferase MraW [Geobacillus kaustophilus HTA426] gi|68565432|sp|Q5L0Y4|RSMH_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56379488|dbj|BAD75396.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 310 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H VLL++ + LN P + +D T G+GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y Q F LQ+ + K VDGV+FDLGVSS Q+D +RGFS+Q Sbjct: 61 ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ +A+++VN ++L RI GEE+ + ++A I + R++ P +TT Sbjct: 121 APLDMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVRRTRPIKTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + + HPA R FQALRI VN+E+E + L A + L GG + V+ Sbjct: 181 ELVDVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + + V + ITKK +VP++E++ N R+R Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNHRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|291166340|gb|EFE28386.1| S-adenosyl-methyltransferase MraW [Filifactor alocis ATCC 35896] Length = 310 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 173/305 (56%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H PV+L + I +LN P + +D T G G+S K +IA D+D A+ + Sbjct: 5 HKPVMLNECIDMLNIVPSGIYVDGTLGGAGHSLEIVKRLDSGKLIAFDQDIEAIKNAKIK 64 Query: 78 MRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Y+++ L F ++ + + ++G++ DLGVSS Q+D +RGFS++ PLD Sbjct: 65 LKSYEDKVILIHDNFRNIKKSLEDIDIFRINGLLLDLGVSSYQLDSPERGFSYRYDAPLD 124 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ S SA +VN + +DL RI+ GEEK ASRIA IV+ R P TT +L Sbjct: 125 MRMNQSSQISAKYIVNTYSEEDLKRIIRDYGEEKWASRIAQFIVEERMKKPIDTTGELVQ 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HPA R+FQA+RI N+E++ + L SA + L GG++ V++FHS Sbjct: 185 IIKAAIPKKAREEEQHPAKRTFQAIRIETNHELDVIHDVLESAVELLLPGGVISVITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF S + + H A + +K +VP++E++ N RSRSAK+ Sbjct: 245 LEDRIVKNFFRDESTGCICSPEIPVCVCNHQARLRLAHRKPLVPSEEELRENPRSRSAKV 304 Query: 312 RAGMR 316 R ++ Sbjct: 305 RGAIK 309 >gi|313632482|gb|EFR99498.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL N1-067] Length = 312 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + ++ VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|257438103|ref|ZP_05613858.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii A2-165] gi|257199434|gb|EEU97718.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii A2-165] Length = 322 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 8/311 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPF 69 +HVPVLL + + L P LD T G G+SR + G +I+LD+DP Sbjct: 12 PASFEHVPVLLNECLDGLKIDPAGTYLDGTAGGAGHSRQIALRLNGEQGGRLISLDQDPD 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV + + ++ Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 72 AVQTARARLAGLPATVVQINFRYAGQALEQLGIETINGALLDLGVSSHQLDDAARGFSYR 131 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++AP +TT Sbjct: 132 ADAPLDMRMSQEGETAADLVNSESREELARILRDYGEEPFAWQIAGRIVEARETAPIETT 191 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V Sbjct: 192 LQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFAHLAPGGRLCV 251 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDRLVK F S A + IT+K + +++ NRRS Sbjct: 252 ITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANTQELEENRRS 311 Query: 307 RSAKLRAGMRT 317 RSA LR + Sbjct: 312 RSAHLRVLEKI 322 >gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601] gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601] Length = 330 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 145/326 (44%), Positives = 199/326 (61%), Gaps = 6/326 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 +A HVPVLL ++ + P +D TFGAGGY+R + G+ VI +DRDP Sbjct: 4 AADQDNGAPHVPVLLRPLLKAVAPVS-GTWVDGTFGAGGYARGLLEAGADKVIGIDRDPL 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A Q + DY ++ L + F+ + + G DGVV DLGVSSMQ+D +RGFSF K Sbjct: 63 AHQMAQAWIGDYGDRLELVEGNFADMDKVIS--GADGVVLDLGVSSMQLDIAERGFSFMK 120 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM SG SA+D+V + + L +L GEE+ + RIA AIVK R P +TT Sbjct: 121 DGPLDMRMEQSGESAADLVKRLDETALADVLYTYGEERASRRIARAIVKARDQEPIETTA 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LSS+++ + K + HPATRSFQALRI VN+E L +GL +AE+ALK GG L VV+ Sbjct: 181 RLSSIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAERALKPGGWLCVVT 240 Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+EDR+VK+FF +R+G+ RH + F+ +T+K V P E++A N R+RS Sbjct: 241 FHSVEDRMVKRFFQARTGRLDTVSRHAPVTETEAPRFELLTRKAVGPDDEELAANPRARS 300 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRL 333 A+LR G RT E +++P+L Sbjct: 301 ARLRIGKRTDAAPGEIGADKLNMPQL 326 >gi|302871361|ref|YP_003839997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis OB47] gi|302574220|gb|ADL42011.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis OB47] Length = 307 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ + L P + +DATFG GG+S+ + SN +IA+DRD A+ Sbjct: 1 MYEHMPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSNKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + +K + ++FS+L + + + +DG++FD GVSS+Q+D +RGFS+ + Sbjct: 61 GKRKLEVHKN-VKIVHSSFSKLDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNQE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN + KDL RI+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSEKDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LS+LI V K+ HPA R+FQA+RI VN+E++E+ L + + L++GG + +S Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNSELDEIKIALEKSLRFLRSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + I ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPICVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|47097273|ref|ZP_00234832.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a F6854] gi|254899261|ref|ZP_05259185.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes J0161] gi|254912599|ref|ZP_05262611.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria monocytogenes J2818] gi|254936926|ref|ZP_05268623.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900] gi|47014346|gb|EAL05320.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a F6854] gi|258609526|gb|EEW22134.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900] gi|293590591|gb|EFF98925.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria monocytogenes J2818] Length = 312 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 171/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIKKI 310 >gi|289435382|ref|YP_003465254.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171626|emb|CBH28172.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 312 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + ++ VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALSLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|313888490|ref|ZP_07822157.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845519|gb|EFR32913.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei ACS-146-V-Sch2b] Length = 312 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 168/307 (54%), Gaps = 8/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ I LN GK+ LD T G G+SR K +I +D+D A+ +E Sbjct: 5 HKSVLLDETIEGLNIREGKIYLDGTLGGAGHSREILKKLKGTGLLIGIDQDIEALEVAKE 64 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +YK F+L F + D + +DGV+ D+GVSS Q D +RGFS++ PLD Sbjct: 65 RLSNYKNVEFFNLNYINFEKALDELGIDKIDGVLLDIGVSSYQFDNPERGFSYRFDAPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ISA D+VN + ++TRI+ GEEK A+RIA IV R++ +TT +L Sbjct: 125 MRMDQELEISARDIVNTYSESEITRIIKEYGEEKWAARIAKFIVDERKTKNIETTFELVE 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + N HPA R+FQALRI VN E++ L + L GG + +++FHS Sbjct: 185 IIKNAIPASARRNGPHPAKRTFQALRIEVNRELDVLEDSIERFVHRLNPGGRIAIITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + I + + +T+K + ++E++ N+RS SAKL Sbjct: 245 LEDRIVKNAFKYLEKDCICPPSSPICTCDKKKEIKILTRKPITASEEELKENKRSHSAKL 304 Query: 312 RAGMRTV 318 R + Sbjct: 305 RIAEKLE 311 >gi|220925316|ref|YP_002500618.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS 2060] gi|263456456|sp|B8IMX2|RSMH_METNO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219949923|gb|ACL60315.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS 2060] Length = 339 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 135/316 (42%), Positives = 197/316 (62%), Gaps = 8/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 + H+PVLL++V + L G +++D TFGAGGY+R+ + VIA+DRDP A++ Sbjct: 4 MPPHIPVLLKEVRSALRLGEGPGIVVDGTFGAGGYTRAILEADPGQRVIAIDRDPTAIAT 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130 G+ + L Q F +L V +G++ V V D+GVSSMQ+D RGFSF++ Sbjct: 64 GRGLAAAMAGRLMLVQGRFGELDRLVRAQGIETVDGVVLDIGVSSMQLDQAQRGFSFRQD 123 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN+A+ +L I+ GEE++A +A AI++ R+ TT Sbjct: 124 GPLDMRMESGGTSAADLVNEASEAELADIIYHYGEERRARAVARAILEARRRGRIATTAT 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ V + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+F Sbjct: 184 LAEIVASVVRPEPGSGIHPATRTFQALRIAVNDELGELQRALHAAERILRPGGRLAVVTF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF++RSG+ ++ +P PA F +TK + P++ + N R+RS Sbjct: 244 HSLEDRIVKQFFSARSGRAVSASRHLPMAEKPAPRSFTLVTKGPIGPSEAEATANPRARS 303 Query: 309 AKLRAGMRTVERSIED 324 AKLRAG RT E Sbjct: 304 AKLRAGERTDAPIPEP 319 >gi|92116827|ref|YP_576556.1| methyltransferase [Nitrobacter hamburgensis X14] gi|91799721|gb|ABE62096.1| methyltransferase [Nitrobacter hamburgensis X14] Length = 399 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 150/343 (43%), Positives = 204/343 (59%), Gaps = 11/343 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN 60 + + M+++ HVPVL + +A+L P G V +DATFGAGGYSR+ + Sbjct: 61 SADGGRIMTASPV----RHVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTR 116 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQ 117 VI +DRD A++ G + + + +L + FS L VDG+V D+GVSSMQ Sbjct: 117 VIGIDRDRSAIAGGFALVEESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQ 176 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +D DRGFSF+ GPLDMRMS G +A+DVV +A+ DL I+ I GEE+++ +A AIV Sbjct: 177 LDEADRGFSFRLDGPLDMRMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIV 236 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ AP TT+ L+ ++ K V K + IHPATR+FQALRIFVN E++EL L +AE+ Sbjct: 237 AARRDAPVATTRALADIVSKVVRA-KPHEIHPATRTFQALRIFVNEELDELIAALAAAER 295 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ GG L VVSFHSLEDR+VK FFA R RH F +T++ V Q Sbjct: 296 VLRPGGRLAVVSFHSLEDRIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQ 355 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 E+V+ N R+RSAKLRA RT + DD P P+L+ Sbjct: 356 EEVSANPRARSAKLRAAERTAAPATADDG--ESPGWPSLANVM 396 >gi|2149901|gb|AAC45631.1| unknown [Enterococcus faecalis] Length = 319 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 103/319 (32%), Positives = 167/319 (52%), Gaps = 11/319 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69 + H VLL++ + L P V +D TFG G+S ++ A D+D Sbjct: 1 MMIEEFRHYTVLLKETVDGLQVKPDGVYVDCTFGGAGHSEYLLTQLNEHGHLYAFDQDQK 60 Query: 70 AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +RG Sbjct: 61 ALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ Sbjct: 121 FSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQ 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 181 PIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKN 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+VK F S + + IT+K ++P+ +++ Sbjct: 241 GRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELS 300 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSAKLR + R Sbjct: 301 ENNRSRSAKLRIAEKIKSR 319 >gi|256852642|ref|ZP_05558013.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8] gi|256711987|gb|EEU27024.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8] Length = 319 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 11/317 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 1 MMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQK 60 Query: 70 AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +RG Sbjct: 61 ALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ Sbjct: 121 FSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQ 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 181 PIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKN 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+VK F S + + IT+K ++P+ +++ Sbjct: 241 GRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELS 300 Query: 302 FNRRSRSAKLRAGMRTV 318 N RSRSAKLR + Sbjct: 301 ENNRSRSAKLRIAEKIK 317 >gi|29375571|ref|NP_814725.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis V583] gi|29343032|gb|AAO80795.1| conserved hypothetical protein TIGR00006 [Enterococcus faecalis V583] Length = 319 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 102/319 (31%), Positives = 166/319 (52%), Gaps = 11/319 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 1 MMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQK 60 Query: 70 AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +RG Sbjct: 61 ALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ Sbjct: 121 FSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQ 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 181 PIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKN 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+VK F S + + IT+K ++P+ +++ Sbjct: 241 GRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELS 300 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSAKLR + R Sbjct: 301 ENNRSRSAKLRIAEKIKSR 319 >gi|322421370|ref|YP_004200593.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18] gi|320127757|gb|ADW15317.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18] Length = 312 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VL ++V+ LL P G + +D T G G++ +I DRD A++ +E Sbjct: 6 HISVLPDEVLGLLAPKSGGIYVDGTLGGAGHAGLILAASAPQGQLIGFDRDAEAIAVAKE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +FQ FS + + + +DG V DLGVSS Q+D +RGFSFQ PL Sbjct: 66 RLAPFGDRVRIFQRNFSSIAQTLAEIGVDAIDGFVLDLGVSSHQLDKDERGFSFQADAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G SA+D+VN + +L RI+ GEE+ A R+A IVK R+ P +TT L Sbjct: 126 DMRMDRSSGPSAADLVNTLSEAELNRIIAEYGEERWAKRVASFIVKAREERPIETTMQLV 185 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + +K R+HPATR+FQ LRI VN E++ L GL K LK GG V+SFH Sbjct: 186 DIIKGAIPKAKWEERLHPATRTFQGLRIAVNEELKSLQLGLTDLLKLLKRGGRGAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + I ++ +TKK + ++++ N RSRSA+ Sbjct: 246 SLEDRIVKEAFRDAAAGCTCPKELPICVCGRVPQYKVLTKKALKAGEKELNANPRSRSAR 305 Query: 311 LRAGMRT 317 LR + Sbjct: 306 LRGIEKI 312 >gi|49474464|ref|YP_032506.1| S-adenosyl-methyltransferase MraW [Bartonella quintana str. Toulouse] gi|54036185|sp|Q6G116|RSMH_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49239968|emb|CAF26373.1| hypothetical protein BQ08940 [Bartonella quintana str. Toulouse] Length = 332 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 163/322 (50%), Positives = 209/322 (64%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G+ VIALDRDP AV GQ + Sbjct: 11 HIPVLLQPVLAGLMPLIGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAVREGQSLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL V + VD V+ D+GVSSMQ D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLMQMEFSQLDRVVEE-KVDAVILDIGVSSMQFDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A DVVN+ DL RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 130 TGFTAGDVVNRLKKDDLARIFKILGEERYAGRIARMIEKRRCVQPFLRTGDLAHAIEALV 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE LK GG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAESVLKPGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF++RSG R++ A PA F S+ K + ++E++ N RSRSA+LR G+RT Sbjct: 250 RFFSARSGGCRRSRYLPEIEAVPATFFSLFKGAITASKEELQQNPRSRSARLRIGIRTEA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + D + L ++ F G Sbjct: 310 ECLAKD--IKLFDFAEIASFEG 329 >gi|257413358|ref|ZP_04742795.2| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] gi|257203798|gb|EEV02083.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] Length = 315 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G GG+S K +I +D+D A+ E Sbjct: 8 HYSVLLNETIENLNIRPDGIYVDGTLGGGGHSYQILKRLGENGRLIGIDQDADAIQAAGE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + ++ + +L ++ ++ +++ + GVDG+V DLGVSS Q+D +RGF+++ P Sbjct: 68 RLAEFGNKATLIRSNYANMKEELHAIGVNGVDGIVLDLGVSSFQLDTPERGFTYREPDAP 127 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + DL RI+ GE+K A IA IVK RQ +T +L Sbjct: 128 LDMRMDDRQSQTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVKERQKKTIETAGEL 187 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + HPA R+FQA+RI +N+E+E L+ L L GG + +++F Sbjct: 188 TDIIRAAIPMKVQVTGGHPAKRTFQAIRIELNHELEVLSDHLDEMIDLLNPGGRICIITF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + IT+K ++P+++++ N RS+SA Sbjct: 248 HSLEDRIVKSNFKRNENPCTCPSDFPVCVCGKVSKGKVITRKPILPSEKELEENSRSKSA 307 Query: 310 KLRAGMR 316 KLR R Sbjct: 308 KLRVFER 314 >gi|294788560|ref|ZP_06753802.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453] gi|294483437|gb|EFG31122.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453] Length = 320 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 166/312 (53%), Gaps = 11/312 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 + H+ VLL + + LN V +D TFG GG+SR +I D+DP A+ Sbjct: 4 PSEFKHITVLLHEAVDALNIRADGVYVDGTFGRGGHSRLILSRLGESGRLIVFDKDPQAI 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 QE + ++ + FS Q + + +DG +FDLG+SS QID RGFSF Sbjct: 64 EVAQE-LAKQDKRVKVIHNGFSHFQVALKNDLGLNHIDGALFDLGISSPQIDDASRGFSF 122 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM G SA+D + A+ +++ ++ GEE+ + +IA AIV +R+ +P Sbjct: 123 RFDAPLDMRMDTTRGQSAADWLAIADEQEIHEVIKNYGEERFSRQIARAIVTQREDSPII 182 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+ + + V ++ PATR+FQA+RIF+N E++E+ L L GG L Sbjct: 183 TTNQLAKITAQVV-RTRERGQDPATRTFQAIRIFINRELDEIQAVLPQVVAHLNIGGRLA 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDRLVK+F + S + I P K + P+ +++A N R Sbjct: 242 VIAFHSLEDRLVKQFIRTHSTHAPLPKWAAIRETDLPQPPLLAVGKAIKPSDDEIAHNPR 301 Query: 306 SRSAKLRAGMRT 317 +RSA LR RT Sbjct: 302 ARSAVLRIAERT 313 >gi|83954000|ref|ZP_00962721.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1] gi|83841945|gb|EAP81114.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1] Length = 333 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 146/331 (44%), Positives = 198/331 (59%), Gaps = 6/331 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS H PVLL ++A + P LD TFGAGGY+R G+ V+A+DRD Sbjct: 4 MSGPSDTPSAPHTPVLLRPLLAAVAPVS-GRWLDGTFGAGGYTRGLLDAGAAQVVAVDRD 62 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q DY ++ + + FS++ DY D +DG+V DLGVSSMQ+D +RGFSF Sbjct: 63 PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV+ R+ AP T Sbjct: 121 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L++ + SK + HPATRSFQALRI VNNE EL GL +AE+ALK GG L V Sbjct: 181 TLALAGLVEGCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G A F+ + +K + P +++ N RS Sbjct: 241 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 300 Query: 307 RSAKLRAGMRTVERSIEDD-SFVHLPRLPTL 336 RSAKLR +RT + D + +P + L Sbjct: 301 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGL 331 >gi|317495032|ref|ZP_07953404.1| MraW methylase [Gemella moribillum M424] gi|316914804|gb|EFV36278.1| MraW methylase [Gemella moribillum M424] Length = 312 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 169/307 (55%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL + +A LN V +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLNEAVAGLNIKENGVYVDCTLGGAGHSLEILKQLTDGKLYAFDQDSVALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++DY ++ ++ F L++ + + VDGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KDKLKDYADKVVFIKSNFKNLREKLLEHGVTEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA ++VN+ + +L +I GEEK + +IA + K+R P +TT + Sbjct: 121 RLDMRMDTDAKISAYEIVNEYDYNELVKIFYRYGEEKFSKQIARNVEKKRLEKPIETTFE 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A +K G + V++ Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKKDGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S + + +++ A + IT+K + PT +++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYAKRKEIPKNLPILPEESLAKLKIITRKPIYPTDKELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRIAE 307 >gi|89099599|ref|ZP_01172474.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911] gi|89085752|gb|EAR64878.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911] Length = 310 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + DH VLLE+ +A L+ P V +D T G G+S + A D+D A+ Sbjct: 1 MFDHKTVLLEETVAGLDIKPDGVYVDCTMGGAGHSELILTQLSSRGKLYAFDQDETAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QE + Y ++ ++ ++ F L++ + VDGV++DLGVSS Q+D +RGFS+ Sbjct: 61 AQEKLSKYGDKITIIKSNFLHLKEELEKAGVTEVDGVLYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +SA +VVN +DL RI GEEK + +IA I R+ AP +TT Sbjct: 121 APLDMRMDKDASLSAYEVVNDWPYEDLVRIFFRYGEEKFSKQIARKIEAAREKAPIETTS 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA R FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEKSLEQAIDILKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + V + + +K ++P++E++ N R+R Sbjct: 241 TFHSLEDRICKATFKKASETPPLPPGLPIIPDEFKPVLKLVARKPILPSEEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|302386836|ref|YP_003822658.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] gi|302197464|gb|ADL05035.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] Length = 312 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 101/312 (32%), Positives = 173/312 (55%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 + +H VLL + I LN P + +D T G GG++ CK +I +D+D A+ Sbjct: 1 MMFEHKSVLLYETIDSLNVKPDGIYVDGTLGGGGHALEVCKRLGTYGRLIGIDQDGDAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++DY+++ ++ ++ + +Q + D + VDG+ DLGVSS Q+D +RGF++++ Sbjct: 61 AAAERLKDYEDKVTVVRSNYENIQTVLKDLGIEKVDGIYLDLGVSSYQLDKPERGFTYRE 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + +A+D++N + DL RI+ GE+K A IA IV+ RQ P +T Sbjct: 121 DDAPLDMRMDQRNEQTAADIINSYSEFDLYRIIRDYGEDKFAKNIAKHIVRARQGKPIET 180 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ +I++ + + HP+ R+FQA+RI +N E+E L + L + L GG L Sbjct: 181 TGELTEIIKEAIPARVRAVGGHPSKRTFQAIRIELNKELEVLNKSLDTMIDLLNPGGRLS 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK F + + + + IT+K +VP++E++ N+R Sbjct: 241 IITFHSLEDRMVKTRFRTNENPCICPSDFPVCVCGRKSKGKVITRKPIVPSEEEIEENKR 300 Query: 306 SRSAKLRAGMRT 317 S+S+KLR R Sbjct: 301 SKSSKLRVFERI 312 >gi|293391350|ref|ZP_06635684.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951884|gb|EFE02003.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D7S-1] Length = 322 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 172/325 (52%), Gaps = 18/325 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP AV+ Q+ +F + TFS++ VDG++ DLGVSS Q+D Sbjct: 61 RDPQAVAEAQKI---QDPRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM GISA++ + Q + +DL +L GEE+ A RIA IV Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + L+ +Q K+ HPATRSFQA+RI++N E++EL L+SA Sbjct: 178 KSAVQNGGEFLARTLQLAELIAQAVPFKDKYKHPATRSFQAIRIYINAELDELENVLQSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 L G L V+SFHSLEDR+VK+F +S + + + + + K + Sbjct: 238 LSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 +P++ ++ N R+RSA LR R Sbjct: 298 MPSEAEIVQNPRARSAVLRVAERIN 322 >gi|227555099|ref|ZP_03985146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22] gi|229548930|ref|ZP_04437655.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC 29200] gi|293382538|ref|ZP_06628472.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712] gi|293387861|ref|ZP_06632400.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613] gi|307268069|ref|ZP_07549457.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248] gi|307272003|ref|ZP_07553269.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855] gi|307275472|ref|ZP_07556614.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134] gi|307278960|ref|ZP_07560019.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860] gi|307289409|ref|ZP_07569363.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109] gi|312904551|ref|ZP_07763709.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635] gi|312906859|ref|ZP_07765856.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512] gi|312952739|ref|ZP_07771601.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102] gi|312978886|ref|ZP_07790612.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516] gi|227175767|gb|EEI56739.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22] gi|229305951|gb|EEN71947.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC 29200] gi|291080086|gb|EFE17450.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712] gi|291082708|gb|EFE19671.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613] gi|306499664|gb|EFM69027.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109] gi|306504347|gb|EFM73558.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860] gi|306507860|gb|EFM76988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134] gi|306511298|gb|EFM80302.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855] gi|306515710|gb|EFM84237.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248] gi|310627113|gb|EFQ10396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512] gi|310629255|gb|EFQ12538.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102] gi|310632064|gb|EFQ15347.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635] gi|311288323|gb|EFQ66879.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516] gi|315031725|gb|EFT43657.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0017] gi|315034218|gb|EFT46150.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0027] gi|315144374|gb|EFT88390.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2141] gi|315149512|gb|EFT93528.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0012] gi|315153065|gb|EFT97081.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0031] gi|315156838|gb|EFU00855.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0043] gi|315157624|gb|EFU01641.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0312] gi|315162946|gb|EFU06963.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0645] gi|315165146|gb|EFU09163.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1302] gi|315168045|gb|EFU12062.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1341] gi|315171926|gb|EFU15943.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1342] gi|315173297|gb|EFU17314.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1346] gi|315574267|gb|EFU86458.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309B] gi|315577395|gb|EFU89586.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0630] gi|315581578|gb|EFU93769.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309A] gi|327534575|gb|AEA93409.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis OG1RF] gi|329574359|gb|EGG55931.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1467] Length = 322 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 11/320 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 3 QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62 Query: 69 FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +R Sbjct: 63 KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREK 182 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+VK F S + + IT+K ++P+ ++ Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302 Query: 301 AFNRRSRSAKLRAGMRTVER 320 + N RSRSAKLR + R Sbjct: 303 SENNRSRSAKLRIAEKIKSR 322 >gi|295092968|emb|CBK82059.1| S-adenosyl-methyltransferase MraW [Coprococcus sp. ART55/1] Length = 311 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 171/305 (56%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S K G +I +D+D A++ + Sbjct: 5 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVKRLGEGGRLIGIDQDEDAIAAASK 64 Query: 77 TMRDYKEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ ++ + F ++ D + + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLEPYGDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + D+VN + +L RIL GEE+ A IA+ I K R++ +TT++L+ Sbjct: 125 DMRMDNRQTKTAKDIVNDYSEAELFRILKDYGEERYAKSIAYHICKYRENKVIETTEELN 184 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ ++N + HP+ ++FQA+RI +N E++ L + +L GG L +++FH Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + IT+K ++P + ++ N RS+S+K Sbjct: 245 SLEDRIVKLAFRKNENPCICPPNFPVCTCGRKPLGKVITRKPIIPGERELEENSRSKSSK 304 Query: 311 LRAGM 315 LR Sbjct: 305 LRVFE 309 >gi|224476281|ref|YP_002633887.1| S-adenosyl-methyltransferase MraW [Staphylococcus carnosus subsp. carnosus TM300] gi|262826678|sp|B9DPQ9|RSMH_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222420888|emb|CAL27702.1| putative MraW methylase family S-adenosyl-methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 311 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ ++IA+D+D A+ Sbjct: 1 MFHHVSVMLRETIDELNVKKDGVYVDCTLGGAGHALYLLNQLDENGHLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ +Q + + F Q+ + D VDG+ +DLGVSS Q+D +RGFS+ + Sbjct: 61 AKEVLKDHLDQVTFVHSNFRQINQILDDLDIDKVDGIYYDLGVSSPQLDVPERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + SA +VVN+ +DL RI GEEK + +IA I K R++ P +TT Sbjct: 121 ARLDMRMDQTQELSAYEVVNEWPYEDLVRIFYRYGEEKFSKQIARRIEKTRENEPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ HPA R FQA+RI VN+E++ L A + +K G + V+ Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELKAFEDSLEQAIERVKVHGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I + + + +K + ++ED+A N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKLKRVNRKPISASEEDLAENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|167772169|ref|ZP_02444222.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM 17241] gi|167665967|gb|EDS10097.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM 17241] Length = 311 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 8/311 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + HVPVLL+ + LN P + +D T G G+SR+ + G +IALD+DP A Sbjct: 1 MDELHFSHVPVLLDACLEGLNIRPDGIYVDGTAGGAGHSRAIAERLDGGRLIALDKDPDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 V+ + + ++ Q+ FS+L + + VDG++ DLGVSS Q+D +RGFS+ Sbjct: 61 VAVASSRLAPFGCA-TVVQSDFSELCTVLDKLGIEAVDGILLDLGVSSYQLDTPERGFSY 119 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ +G+SA DVVN + KDL R+ GEEK A IA I+K R P T Sbjct: 120 AHDAPLDMRMTKTGLSARDVVNTYSFKDLCRVFRDYGEEKFAPAIAKNILKSRTQRPIAT 179 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+++I ++ ++ +PA R FQA+RI VN E+ L+ L A + L+ GG + Sbjct: 180 TAELAAIIGASIPARARREGGNPAKRVFQAIRIEVNGELSSLSVFLGEAFERLRIGGRMA 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK+ FA+ + + + +K + + ++A N R Sbjct: 240 IITFHSLEDRMVKQRFAALCRGCTCPPDFPVCICGNQPRGRLLNRKPIEAGERELAANSR 299 Query: 306 SRSAKLRAGMR 316 S+SAKLR + Sbjct: 300 SKSAKLRVIEK 310 >gi|227517912|ref|ZP_03947961.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104] gi|227074666|gb|EEI12629.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104] Length = 322 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 165/318 (51%), Gaps = 11/318 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 3 QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62 Query: 69 FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +R Sbjct: 63 KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYGELVKIFFRYGEEKFSKQIAREIERVREK 182 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+VK F S + + IT+K ++P+ ++ Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302 Query: 301 AFNRRSRSAKLRAGMRTV 318 + N RSRSAKLR + Sbjct: 303 SENNRSRSAKLRIAEKIK 320 >gi|315304096|ref|ZP_07874497.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596] gi|313627537|gb|EFR96269.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596] Length = 312 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + ++ VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + HP R+FQA+RI VN+E+ + L A + GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLITPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPLGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVIEKI 310 >gi|229546836|ref|ZP_04435561.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322] gi|307290049|ref|ZP_07569973.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411] gi|312901052|ref|ZP_07760343.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470] gi|229308001|gb|EEN73988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322] gi|306498891|gb|EFM68385.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411] gi|311291878|gb|EFQ70434.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470] gi|315029678|gb|EFT41610.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4000] Length = 322 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 165/318 (51%), Gaps = 11/318 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 3 QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62 Query: 69 FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +R Sbjct: 63 KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREK 182 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+VK F S + + IT+K ++P+ ++ Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302 Query: 301 AFNRRSRSAKLRAGMRTV 318 + N RSRSAKLR + Sbjct: 303 SENNRSRSAKLRIAEKIK 320 >gi|223984258|ref|ZP_03634404.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM 12042] gi|223963789|gb|EEF68155.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM 12042] Length = 312 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 175/312 (56%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL++ I LN + +D T G GG+S + ++ A D D A++ Sbjct: 1 MTRHYSVLLQESIDALNCQSDGIYVDGTLGRGGHSLEIARRLQNGHLYAFDLDEQALAES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + +L +A F+Q+++ + VDGVV DLGVSS Q D G+RGFS++ Sbjct: 61 AQRLAEVSGRVTLIRANFAQMREELNARGVMSVDGVVMDLGVSSPQFDDGERGFSYRYDA 120 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM SA ++VN+ + K+L+ +L GEE + IA IV+ R P TT + Sbjct: 121 RLDMRMDQSQPRSAWNLVNELDEKELSALLWKYGEESYSRPIARQIVRARTLHPIDTTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+K + N + HPA ++FQALRI VN E+E L GLR+A +K GG + V++ Sbjct: 181 LVDVIKKALPAKVLNKKGHPAKQTFQALRIAVNGELESLETGLRAAMSLVKPGGRIAVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+ F S + PS F+ +++K ++P +E++A N RS Sbjct: 241 FHSLEDRIVKETFRQASSVEKTDPRIPLLPSQIRQPDFRLVSRKPILPGEEELAENNRSH 300 Query: 308 SAKLRAGMRTVE 319 SAKLR R + Sbjct: 301 SAKLRVLERIGD 312 >gi|84501746|ref|ZP_00999918.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597] gi|84390367|gb|EAQ02926.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597] Length = 331 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 137/326 (42%), Positives = 195/326 (59%), Gaps = 5/326 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+++ H+PVLL +I + P LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MAASAPSPDAPHIPVLLRPLIDRVAPVA-GTWLDGTFGAGGYARGLLEAGAEKVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + D + + Q F++L + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLALEMAGGWIGDCAGKLEIRQGNFAELDRIAGEM-LDGVVLDLGVSSMQLDLAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+VN DL ++ + GEE+ + RIA AIV+ R AP T Sbjct: 119 MKDGPLDMRMSQEGPSAADLVNTMAEGDLADVIYLYGEERASRRIARAIVRERAEAPIAT 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++ + +K + HPATR+FQALRI VN+E LA+GL +AE+AL+ GG L V Sbjct: 179 TLRLAGIVEGCLPRAKPGQSHPATRTFQALRIAVNDEYGALAEGLMAAERALRPGGQLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F RSG+ + F +T+K V P ++++ N R+ Sbjct: 239 VTFHSVEDRMVKRFLQLRSGRAGRANRFAPEAPEDKPRFTIVTRKAVGPDEDELEVNPRA 298 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSA+LR RT E + D + +P Sbjct: 299 RSARLRVARRTEEPAEPIDRKALGMP 324 >gi|293376042|ref|ZP_06622295.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909] gi|325844610|ref|ZP_08168253.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1] gi|292645343|gb|EFF63400.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909] gi|325489035|gb|EGC91422.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1] Length = 310 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H VLL + I L + +D T G GG+S K ++ + D+D FA+ Sbjct: 1 MFNHYSVLLRESIENLEIKEDGIYVDCTLGGGGHSSEILKRLTTGHLYSFDQDSFAIENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +++ + F++ ++ F L++ + +DG++FDLGVSS Q D +RGFS+ Sbjct: 61 TKRLKEIGDNFTIIKSNFVHLKEELNARGVMKIDGIIFDLGVSSPQFDTPERGFSYNHDA 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +SA ++VN+ K+L I + +EK + +IA AI + R+ P +TT + Sbjct: 121 KLDMRMDQEAELSAYEIVNEWEYKNLEYIFRVYSDEKFSKQIARAIERYREKQPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQALRI VN+E++ + L+ A L G + V++ Sbjct: 181 LVEIIKSAIPAPARRKGGHPAKRTFQALRIAVNDELKVFEKALKDAMDMLNVEGRVAVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K F RS R + F+ IT+K +V + ++ N RS S Sbjct: 241 FHSLEDRICKHMFKERSEAKDLPRGLPVIPQEFQPEFKLITRKPIVADETELTENNRSHS 300 Query: 309 AKLRAGMR 316 AKLR M+ Sbjct: 301 AKLRVAMK 308 >gi|223041547|ref|ZP_03611748.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202] gi|223017642|gb|EEF16052.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202] Length = 314 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MSDTLHKHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAHTI---TDPRFQIVHTAFSAIPQVCEDLGLIGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ ++Q +V+DL +L GEE+ A RIA AIV +++ Sbjct: 118 SFMRDGPLDMRMDTSKGLSAAEWLDQVSVEDLAWVLKEFGEERFAKRIATAIVNFNKTSG 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + T+ L + K+ HPATRSFQA+RIF+N+E++EL + L SA L G Sbjct: 178 QKITRTLQLAQIISDAVPFKDKHKHPATRSFQAIRIFINSELDELEKALNSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDV 300 L ++SFHSLEDR+VK+F S R + ++I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTI-GKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRVAEK 312 >gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I] gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I] Length = 330 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 149/333 (44%), Positives = 204/333 (61%), Gaps = 6/333 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+ G H+PVLL ++ + P LD TFGAGGY+R G+ VIA+DRD Sbjct: 1 MTDRPSAPSGPHIPVLLRPLLKAVAPVS-GRWLDGTFGAGGYTRGLLDAGADQVIAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y ++ L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAKPWAGQYGDRLILQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS SG SA+D++ + + IL GEE+ + RIA AIV+ R++ P T Sbjct: 118 MKDGPLDMRMSQSGPSAADLIAELTEAQIADILYHYGEERASRRIARAIVREREAEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLRLAGIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK A R+ PA F+ +T+K V P ++++A N R+ Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPEQEETPAQFELVTRKAVGPDEQELAENPRA 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQ 338 RSA+LR G RT + + +P+L + Sbjct: 298 RSARLRVGRRTNAAPGPISAKELGMPQLKETPK 330 >gi|254518688|ref|ZP_05130744.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA] gi|226912437|gb|EEH97638.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA] Length = 310 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 169/311 (54%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 HV VLL + I LN + +D T G GG+S K S +I +D+D A+ Sbjct: 1 MEFKHVSVLLNECIEGLNIKEDGIYVDGTLGGGGHSLEILKRLSKDGTLIGVDQDKDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++D+ + F + + + K +DG++ DLGVSS Q+D GDRGFS+ + Sbjct: 61 AAGERLQDFAN-VKFVHSNFYNIDSVLNNLEIKKIDGMLMDLGVSSYQLDEGDRGFSYMQ 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SA +V+N+ +++ RI+ GEEK A RIA IV+ R++ P +TT Sbjct: 120 DAPLDMRMNRESSLSAYEVINEYEEEEIYRIIRDYGEEKFAKRIARFIVENRENKPIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R+FQA+RI VN+E+ L + + L GG + + Sbjct: 180 LELVEIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELSILNKAIEDGVNRLNKGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + A + I++K + P++E+V N RS Sbjct: 240 ITFHSLEDRIVKLKFKELATSCTCPKEFPICVCGGKAKVKLISRKAIEPSKEEVEENPRS 299 Query: 307 RSAKLRAGMRT 317 RSAKLR R Sbjct: 300 RSAKLRVIERI 310 >gi|222528776|ref|YP_002572658.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM 6725] gi|263446717|sp|B9MQ93|RSMH_ANATD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222455623|gb|ACM59885.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM 6725] Length = 307 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN +IA+DRD A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS +L + + + +DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRKLEAYKN-VKIVHSSFSKVDELLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN + +DL +I+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LSSLI V K+ HPA R+FQA+RI VN E++E+ L + + L++GG + +S Sbjct: 180 ELSSLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|150016452|ref|YP_001308706.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB 8052] gi|263446053|sp|A6LTS0|RSMH_CLOB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149902917|gb|ABR33750.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB 8052] Length = 310 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 164/310 (52%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 HV VLL + I LN + +D T G G+S S +I +D+D A+ Sbjct: 1 MEFKHVSVLLNECIEALNIKENGIYVDGTLGGAGHSSHILSNLSKDGMLIGIDQDQDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++D++ + F + + D + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 61 AAKEKLKDFEN-VKYVHSNFYNIDSILNDLDIEKVDGILMDLGVSSYQLDEASRGFSYMK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + SA ++VN + L +I+ GEE+ A RIA+ I+ RR P +TT Sbjct: 120 DAPLDMRMNRENDFSAYNIVNNYDEDSLYKIIKDYGEERFAKRIANFIINRRIEKPIETT 179 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA R+FQA+RI VN+E++ L + + L GG + + Sbjct: 180 FELVDIIKAAIPAKMRREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKGGRMAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + ++I KK + PT+E++ N RS Sbjct: 240 ITFHSLEDRIVKLKFRELENPCTCPKEFPMCICGKSPLVKNIAKKGIAPTKEEIEENPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRVIEK 309 >gi|165975468|ref|YP_001651061.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|263446591|sp|B0BRG9|RSMH_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165875569|gb|ABY68617.1| S-adenosyl-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 313 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q + DL +L GEE+ A RIA A+V +S Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSVT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|154485082|ref|ZP_02027530.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC 27560] gi|149734035|gb|EDM50154.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC 27560] Length = 311 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL + I LN P + +D T G GG+S CK +I +D+D A+ + Sbjct: 4 KHVSVLLNETIDGLNINPDGIYVDGTLGGGGHSYEICKRLSDKGRLIGIDQDGEALEAAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++++++ +L ++ + ++ + D + VDG+V DLGVSS Q+D +RGFS++ P Sbjct: 64 ERLKEFEDKITLVRSNYCEIDTILKDLEIEKVDGIVLDLGVSSYQLDNLERGFSYKSDAP 123 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+DVVN + +L RI+ GE+K A IA IV R+ P +TT +L Sbjct: 124 LDMRMDQRQNKTAADVVNNYSENELFRIIRDYGEDKFAKNIAKHIVMARKEKPLETTAEL 183 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S +I+ ++ + HPA ++FQA+RI VN E+ L + L + L GG + V++F Sbjct: 184 SEIIKASIPMKFQAKGGHPAKKTFQAIRIEVNQELTVLKESLDTMIDHLNPGGRICVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K F + + IT+K ++P++E++ N+RS+S+ Sbjct: 244 HSLEDRITKIKFRENENPCTCPPDFPVCVCGKVSKGKVITRKPIIPSEEEMTENKRSKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|298293108|ref|YP_003695047.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506] gi|296929619|gb|ADH90428.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506] Length = 345 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 142/323 (43%), Positives = 200/323 (61%), Gaps = 6/323 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PVLL +V+ L P G + +D TFGAGGY+ + G++VIA+DRDP A+ GQ Sbjct: 17 ARHLPVLLAEVVEHLAPKDGGLYIDGTFGAGGYTSAILNAAGTSVIAIDRDPTAIEGGQG 76 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +L FS L + VDGVV D+GVSSMQID G+RGFSF++ GPL Sbjct: 77 LVAASGGRLTLVHERFSALDEVAAAQGIDAVDGVVLDIGVSSMQIDEGERGFSFRRDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D+V + + DL ++ GEE+ + +A AIV R+ AP + T L+ Sbjct: 137 DMRMSSEGPSAADLVAKLSETDLANLIFRFGEERHSRAVARAIVAARKEAPIERTLQLAD 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K V+ K + HPATR+FQALRI VN+E+ ELA+ L +AE+ LK GG L+VV+FHSL Sbjct: 197 IVAKVVWA-KPHEPHPATRTFQALRIAVNDELGELARALSAAERVLKPGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F A+R+ RHM + P F+ + + V P +E++A N R+RS++LRA Sbjct: 256 EDRIVKTFLANRAKAAAGSRHMPALQSAPPSFKLVARGAVEPGEEELARNPRARSSRLRA 315 Query: 314 GMRTVERSIEDDSFVH-LPRLPT 335 RT + LP +P Sbjct: 316 AERTEAPAHPAGDLSSLLPPVPD 338 >gi|298369646|ref|ZP_06980963.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014 str. F0314] gi|298282203|gb|EFI23691.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014 str. F0314] Length = 323 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 173/316 (54%), Gaps = 10/316 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P V +D TFG GG+SR +I D+DP A+ + Sbjct: 8 KHITVLLNEAVDALNIRPDGVYVDGTFGRGGHSRLILSRLGEEGRLIVFDKDPQAIVAAR 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y + S+ FS Q + + VDG +FDLGVSS QID G RGFSF+ P Sbjct: 68 K-LAAYDMRVSVVHDGFSVFQTALDELGIGKVDGALFDLGVSSPQIDEGGRGFSFRFDAP 126 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT+ L Sbjct: 127 LDMRMDPTRGMSAAEWIATASEQDLNEVIKNYGEERFSRQIARAIVAQREESPIDTTRKL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V ++ PATR+FQA+RIF+N E+EE+ L A LK GG L V++FH Sbjct: 187 AQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEIEAVLPQATGRLKEGGRLAVIAFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F +S R + + P K V P+ ++ N RSRSA Sbjct: 246 SLEDRIVKQFIKKQSQHAPLPRWVAVKEADLPQPPLRPVGKAVRPSDAEIQANPRSRSAV 305 Query: 311 LRAGMRTVERSIEDDS 326 LR RT + Sbjct: 306 LRVAERTAGSFNAEGK 321 >gi|262831538|sp|Q1QNV1|RSMH_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 149/332 (44%), Positives = 200/332 (60%), Gaps = 7/332 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + + HVPVL + +A+L P G V +DATFGAGGYSR+ + VI +DRD A+ Sbjct: 1 MTASPVRHVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + + +L + FS L VDG+V D+GVSSMQ+D DRGFSF+ Sbjct: 61 AGGFALVEESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRMS G +A+DVV +A+ DL I+ I GEE+++ +A AIV R+ AP TT Sbjct: 121 LDGPLDMRMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V K + IHPATR+FQALRIFVN E++EL L +AE+ L+ GG L VV Sbjct: 181 RALADIVSKVVRA-KPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK FFA R RH F +T++ V QE+V+ N R+RS Sbjct: 240 SFHSLEDRIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLRA RT + DD P P+L+ Sbjct: 300 AKLRAAERTAAPATADDG--ESPGWPSLANVM 329 >gi|104773820|ref|YP_618800.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983974|sp|Q1GAU0|RSMH_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460423|sp|Q04B77|RSMH_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|103422901|emb|CAI97563.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125484|gb|ADY84814.1| S-adenosyl-methyltransferase mraW [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 314 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL + I L P G +DATFG GG++R + N+I D+D +A+ Sbjct: 1 MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDT 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 Q D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGF Sbjct: 61 AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGF 120 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++ LDMRM A +VNQ + K L +L G+EK + +IA IV+RR+ P Sbjct: 121 SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKP 180 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I++ + + + HPA +SFQA+R+ VN+E++ L L A L GG Sbjct: 181 IETTFELVEIIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++F SLED++VK+ F S + + + + +K + ++E++A N Sbjct: 241 RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAEN 300 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 301 NRSHSAKLRVAEK 313 >gi|303250489|ref|ZP_07336686.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251832|ref|ZP_07338003.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249133|ref|ZP_07531140.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249209|ref|ZP_07531206.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251531|ref|ZP_07533438.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260461|ref|ZP_07542156.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649262|gb|EFL79447.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650477|gb|EFL80636.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854421|gb|EFM86617.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858733|gb|EFM90792.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860995|gb|EFM93001.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869864|gb|EFN01646.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 313 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|300854240|ref|YP_003779224.1| putative S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434355|gb|ADK14122.1| predicted S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 309 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 162/309 (52%), Gaps = 7/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HVPVLL + I LN + +D T G GG+S K +I +D D A++ Sbjct: 1 MKFKHVPVLLNETINSLNIKEDGIYVDCTLGGGGHSFEILKRLSDKGRLIGIDEDTSAIN 60 Query: 73 CGQETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + ++K + + ++ + + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 61 ATRERLNEFKNITYVHNNFYYIDEILEELKIDKVDGILMDLGVSSYQLDESERGFSYMKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ SA +V+N + ++L ++ GEE + RIA IV R+ AP QTT Sbjct: 121 APLDMRMNRDSSLSAYEVINNYSEENLYNVIRDYGEENFSKRIAKFIVAEREKAPIQTTL 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + HPA R+FQA+RI VN E++ L + + + K L GG + +++ Sbjct: 181 QLVDIIRNAIPARFQKEGHPAKRTFQAIRIEVNGELKILNKAVEDSVKRLNTGGRISIIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR++K F + + I KK ++PT+E+ N RS+S Sbjct: 241 FHSLEDRIIKTKFKKLENPCTCPPDFPLCVCGKKPIVKIINKKPIIPTKEEKEKNSRSKS 300 Query: 309 AKLRAGMRT 317 +KLR + Sbjct: 301 SKLRTAEKI 309 >gi|260589610|ref|ZP_05855523.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|331083033|ref|ZP_08332152.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539850|gb|EEX20419.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|330399770|gb|EGG79431.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 6_1_63FAA] Length = 313 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 168/312 (53%), Gaps = 9/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H VLLE+ + L P + +D T G GG+S + ++I +D+D A++ Sbjct: 1 MEFKHQSVLLEETVGNLRVKPDGIYVDGTLGGGGHSYAICQQLSAKGSLIGIDQDEAAIN 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++++KEQ ++ ++ + ++ + VDG+V DLGVSS Q+D +RGF++++ Sbjct: 61 AAGNRLQEFKEQVTIIRSNYCNMKRELQKIGITSVDGIVLDLGVSSYQLDNSERGFTYRE 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A ++VN+ + +L RI+ GE+K A IA I RQ +TT Sbjct: 121 DVPLDMRMDQRNPRTAKNIVNEYSENELYRIIRDYGEDKFAKNIAKHICMARQEKEIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + + HPA ++FQA+RI +N E++ L L + L G + + Sbjct: 181 GELIEIIKRAIPMKMRAVGGHPAKKTFQAIRIELNQELDVLRNSLDDMIELLNDQGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + IT+K ++P++E++ N+RS Sbjct: 241 ITFHSLEDRIVKTIFKRNENPCTCPPGFPVCVCGNQSKGKVITRKPILPSEEELEMNKRS 300 Query: 307 RSAKLRAGMRTV 318 +SAKLR R Sbjct: 301 KSAKLRVFERVK 312 >gi|53729126|ref|ZP_00134091.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207498|ref|YP_001052723.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae L20] gi|263440608|sp|A3MY82|RSMH_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126096290|gb|ABN73118.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 313 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 172/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + + +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---NDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q +V DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|302380517|ref|ZP_07268982.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3] gi|303234081|ref|ZP_07320730.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4] gi|302311460|gb|EFK93476.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3] gi|302495006|gb|EFL54763.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4] Length = 312 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 165/311 (53%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 HVP+LL + I LN GK+ +D T G G+SR K +I D+D A+ Sbjct: 1 MEFKHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + ++ ++ + F +++ + + + VDG++ D+GVSS QID RGFS+ Sbjct: 61 AKQRLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S SA D+VN + +DL ++ +EK A RIA I R++ P TT Sbjct: 121 ADLDMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTF 180 Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + N + H A ++FQA+RI VN E++ L Q + + L G + + Sbjct: 181 ELVEVIEKAIPKKVRVNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLED++ K F R + + H + IT+K + P+++++ N R+ Sbjct: 241 ITFHSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKDELMQNSRA 300 Query: 307 RSAKLRAGMRT 317 RSAKLR + Sbjct: 301 RSAKLRVAEKI 311 >gi|310828121|ref|YP_003960478.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612] gi|308739855|gb|ADO37515.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612] Length = 311 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 169/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L P +D T G GG+S CK +I +D+D FA+ Sbjct: 5 HTTVLLHETVDGLMIRPDGTYVDGTLGGGGHSELICKRLSADGTLIGIDQDDFALDYAGR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + L + F L++ + + +DG+++DLGVSS Q D RGFS+ GPL Sbjct: 65 RLAPYACRKQLVKNNFVHLKEVLGEAGVSQIDGIIYDLGVSSFQFDDETRGFSYHHDGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA +VVN + L ++L + GEE+ A RI +AI+K R++ P +TT +LS Sbjct: 125 DMRMDSGAELSAYEVVNAYPPERLKKVLQVYGEERFAGRIVNAIIKERETKPIETTLELS 184 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + + HPA +SFQA+R+ VN+E++ L + +ALK GG + +++FH Sbjct: 185 ELIKAAYPAKERFKEKHPARKSFQAIRLEVNHELDILEDAFSAGIEALKPGGRMCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK FF + + IT+K V+P E++ NRRSRSAK Sbjct: 245 SLEDRIVKHFFKDKQNPCTCPPEFPACVCGKKPEVRIITRKPVLPAPEEIEANRRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|307244811|ref|ZP_07526910.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253765|ref|ZP_07535619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258222|ref|ZP_07539965.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854256|gb|EFM86462.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863249|gb|EFM95189.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867682|gb|EFM99527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 313 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIEHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 NKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|224541552|ref|ZP_03682091.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM 15897] gi|224525519|gb|EEF94624.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM 15897] Length = 315 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 8/313 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + +H VLL++ I LN + +D T G GG+S + ++ D+D A+ Sbjct: 3 NMFEHYSVLLDETIDALNIKEDGIYVDCTLGGGGHSSRILEKLTTGHLYCFDQDAHAIEA 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E M + F++ A F +++ + VDG+VFDLGVSS Q D +RGFS+ Sbjct: 63 ARERMSQISDNFTIIHANFKEIKARLSMEGVYKVDGIVFDLGVSSPQFDNAERGFSYNTD 122 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ SA +VVN + +DL IL +EK A IA I K RQ P +TT Sbjct: 123 ARLDMRMNQEQPLSAYEVVNNYSYQDLVTILYKYADEKFAKSIARMIEKERQVKPIETTF 182 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +++K + ++ HPA R+FQA+RI VN+E+ + L + L GG + V+ Sbjct: 183 ELVEIVKKAIPARARRTGGHPAKRTFQAIRIEVNDELNVFERALTDSLDLLNVGGRVAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLED++ K F ++ M + F+ +T+K +V +++++ NRRS Sbjct: 243 SFHSLEDKITKYMFNEKTAVPDLPMGMPVIPEEYQPHFKKVTRKPIVADEKELSENRRSH 302 Query: 308 SAKLRAGMRTVER 320 SAKLR R + Sbjct: 303 SAKLRVIERIRDE 315 >gi|322384129|ref|ZP_08057847.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151209|gb|EFX44518.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL E+ + L+ P + +D T G G+S ++ALD+D A++ Sbjct: 1 MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124 Q + +Y+++ + + F +L+ VDG++FDLGVSS Q+D +RG Sbjct: 61 AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ LDMRM S +A +VN+ +++ RIL + GEEK + +IA +IVK R++ Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT +L +I++ + + + + HPA RSFQALRI VN+E+ L A + L G Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K+ FA GK + ++ + + +K + +++++A Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKSILKLVNRKPITASEKELA 300 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RSAKLR + Sbjct: 301 YNPRARSAKLRIAEK 315 >gi|240850900|ref|YP_002972300.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup] gi|263445977|sp|C6AEK6|RSMH_BARGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240268023|gb|ACS51611.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup] Length = 332 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 162/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+ + K G+ VIALDRDP A+S GQ + Sbjct: 11 HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTCALLKAGAEVIALDRDPHAISAGQSLVE 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLVQMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A DVVN +DL RI ILGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 130 TGFTAGDVVNHLKARDLARIFKILGEERYAGRIARMIEKRRVVQPFLRTGDLAYAIEALI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERILKPGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF+ RSG+ M R++ PA F + K + ++E++ N RSRSA+LR G+RT Sbjct: 250 RFFSFRSGECMRSRYLPEIKTAPATFFPLFKGGITASEEELQQNPRSRSARLRIGVRTEA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 ++ D + L L ++ F G Sbjct: 310 EALAAD--MKLFGLAEIASFEG 329 >gi|312134653|ref|YP_004001991.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis OL] gi|311774704|gb|ADQ04191.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis OL] Length = 307 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 121/309 (39%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ + L P + +DATFG GG+S+ + S+ +IA+DRD A+ Sbjct: 1 MYEHIPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSDKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ ++ +K + ++FS++ + + + +DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRKLKVHKN-VKIVHSSFSKVDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN + KDL +I+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQKDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LS+LI V K+ HPA R+FQA+RI VN E++E+ L + + L++GG + +S Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|315194065|gb|EFU24458.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS00] Length = 311 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNIKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31] gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31] Length = 322 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 146/311 (46%), Positives = 196/311 (63%), Gaps = 3/311 (0%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 + HV VLL +V+A L PG +++D TFGAGGY+R+ G++V A DRDP Sbjct: 9 NPEGASHVSVLLGEVVAALASGPGDMVIDGTFGAGGYTRAILATGASVTAFDRDPSVQRF 68 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E +F L Q FSQ+ +Y+ D VDGV DLGVSSMQ+D +RGFSF + GPL Sbjct: 69 AAEFSA-TDGRFRLIQDRFSQITEYLEDASVDGVTLDLGVSSMQLDEAERGFSFMRDGPL 127 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G +A+D+VN + +L RIL + GEE + RIA I+KRR+ PF T DL+ Sbjct: 128 DMRMGADGPTAADLVNDLDHTELARILYVYGEEHASRRIASFIIKRREERPFTRTLDLAH 187 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I++ + K ++HPATRSFQ LRI VN E++EL GL +AE+ LK GG L VV+FHSL Sbjct: 188 VIERALGGRKGAKVHPATRSFQGLRIAVNAELDELEAGLLAAERVLKPGGRLAVVTFHSL 247 Query: 254 EDRLVKKFFASRSGKVM-AVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK F A R+G+ RH+ P P FQ I+ K + P + ++A N R+RS+KL Sbjct: 248 EDRIVKNFLAERAGRTPGGSRHLPPVEAGAPPSFQLISSKAIAPGEAELAVNPRARSSKL 307 Query: 312 RAGMRTVERSI 322 RA +RT Sbjct: 308 RAAVRTTAPVW 318 >gi|315147940|gb|EFT91956.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4244] Length = 322 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 11/320 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 3 QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62 Query: 69 FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +R Sbjct: 63 KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM ++A +VVN + +L +I GEEK + +I I + R+ Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQITREIERVREK 182 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+VK F S + + IT+K ++P+ ++ Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302 Query: 301 AFNRRSRSAKLRAGMRTVER 320 + N RSRSAKLR + R Sbjct: 303 SENNRSRSAKLRIAEKIKSR 322 >gi|317129306|ref|YP_004095588.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM 2522] gi|315474254|gb|ADU30857.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM 2522] Length = 310 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VL E+ + LN V +D T G GG+S +I+ D+D A+S Sbjct: 1 MFEHETVLKEETVKGLNIHEDGVYVDCTLGGGGHSERIASMLGANGKLISFDQDEVALSH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + ++++ + F L+ ++ VDG VFDLGVSS Q D +RGFS++ Sbjct: 61 AKERLAPFRDKIIFVHSNFQYLKQELTHLGYSSVDGFVFDLGVSSPQFDEPERGFSYRFD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A +VVN +D+ +++ GEE+ A IA I K R+ +P +TT Sbjct: 121 APLDMRMDRGQSLTAYEVVNNWPFEDIMKVISRYGEERFAKHIARKIEKAREVSPIKTTF 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQA+RI VN+E+ Q L A G + V+ Sbjct: 181 ELVDIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFEQALYDAIDMTTEKGRIAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F ++S R + +H + KK ++ ++E++ N R++ Sbjct: 241 TFHSLEDRICKHVFKNKSTPKDLPRGLPVIPESHKPELMLVNKKPILASEEELENNSRAQ 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP 105476] gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476] Length = 332 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 168/322 (52%), Positives = 215/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ K G+ VIALDRDP A++ GQ + Sbjct: 11 HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTRALLKAGAQVIALDRDPHAIAAGQSLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLVHMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G SASDVVN KDL RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 130 TGFSASDVVNHLKAKDLARIFKILGEERYAGRIARMIEKRRAVQPFLRTGDLAYAIEALV 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERVLKAGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF SRSG+ M RH+ PA F + K + +E++ N RSRSA+LR G+RT Sbjct: 250 RFFVSRSGEGMRSRHLPEIKHSPATFFPLFKGGITANKEELQQNPRSRSARLRMGVRTNA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 ++ +D + L L ++ F G Sbjct: 310 EALAED--MKLFGLAEIASFEG 329 >gi|313905185|ref|ZP_07838553.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] gi|313469938|gb|EFR65272.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] Length = 326 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 163/310 (52%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLL + I L P + +D T G GG+S CK G +I +D+D A+ Sbjct: 1 MEFKHKSVLLTETIDHLAIKPEGIYVDGTLGGGGHSYEICKRLSGGGRLIGIDQDEDAIR 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q + YK++ ++ + + + + + VDG++ DLGVSS Q+D +RGF++++ Sbjct: 61 AAQARLAKYKDRVTILRGNYRNMVQMLAEIGVTSVDGILLDLGVSSYQLDTAERGFTYRE 120 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM SA DVVN + L +++ GEEK A IA I RQ P +TT Sbjct: 121 DTRLDMRMDRRQPFSAFDVVNSYTKEKLYQVIRDYGEEKFAENIAKHICLERQKKPVETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I+ + + N HPA R+FQA+RI VN E++ L L L GG L V Sbjct: 181 GELAEIIKGAIPAKLRANGGHPAKRTFQAIRIEVNAELDVLKDSLDGMIDILNDGGRLCV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + ++T+K +VPT E++ FN RS Sbjct: 241 ITFHSLEDRIVKNNFRRNENPCICPPQFPVCVCGKKSKGSTVTRKPIVPTAEEMEFNPRS 300 Query: 307 RSAKLRAGMR 316 +S+KLR R Sbjct: 301 KSSKLRVFER 310 >gi|332704509|ref|ZP_08424597.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio africanus str. Walvis Bay] gi|332554658|gb|EGJ51702.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio africanus str. Walvis Bay] Length = 328 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 13/325 (4%) Query: 8 TMSSAIHHTIGDH--VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVI 62 M H G+H + VLL + + L P PG LD T G GG+S + + G+ ++ Sbjct: 1 MMRELAHKEQGEHGHISVLLAETLEFLAPRPGGRYLDGTLGLGGHSEAILELAGQGAELL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 LDRD A+ + + + + L QA +S + + + +DG V DLG+SS+Q+D Sbjct: 61 GLDRDAQALERARTRLARFGQAAHLVQAPYSSFEAEMENLGWDLLDGAVLDLGISSLQVD 120 Query: 120 CGDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +RGFSF GPLDMRM AS +VN+A+ + L I+ LGEE A RIA AIV Sbjct: 121 LAERGFSFMAEGPLDMRMDPDSGAAPASQIVNKASCERLKEIIRDLGEEPMAGRIARAIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ +TT +L++++ + + + R HPATR+FQALR+ VN+E+EEL L Sbjct: 181 EARQDKEIETTLELAAIVARAYPAKWRRTARNHPATRTFQALRMAVNSELEELESFLSRI 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVV 294 L+ GG ++V+SFHSLEDRLVK F + K R + +TKK + Sbjct: 241 TDRLRPGGRVVVISFHSLEDRLVKWAFREDARKCRCPRTQPFCDCGGQPRLKLLTKKPLA 300 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 P+++++A N RSRSAKLRA R E Sbjct: 301 PSEQEMAANPRSRSAKLRAAERVGE 325 >gi|260437306|ref|ZP_05791122.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] gi|292810218|gb|EFF69423.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] Length = 313 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 94/308 (30%), Positives = 154/308 (50%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G G+S +I +D+D A+ Sbjct: 5 HKSVLLNECIENLNIKPDGIYVDGTLGGAGHSYHICERLSKKGRLIGIDQDEDAIRAATT 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +K++ ++ + +S +++ + VDG++ D+GVSS Q+D +RGF++++ Sbjct: 65 RLEPFKDRVTIVKDNYSNIKNVLVSLGIDKVDGILLDIGVSSYQLDNAERGFTYKEEDAP 124 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 SGI+A DVVN + +L R++ GEE+ A IA I R + TT L Sbjct: 125 LDMRMDRQSGITAQDVVNDYSEMELFRVIRDYGEEQFAKNIAKHICIERNKSRITTTGRL 184 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + N HPA ++FQA+RI VN E+ L + + + L G L +++F Sbjct: 185 TEIIKAAIPMKFRVNGGHPAKKTFQAIRIEVNRELYVLEESIDTMIDLLNDKGRLCIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + IT+K +VPT E++ N+R++S+ Sbjct: 245 HSLEDRIVKNKFRDNVNTCTCPPDFPVCVCGNRPKGVIITRKPIVPTDEEIEINKRAKSS 304 Query: 310 KLRAGMRT 317 KLR R Sbjct: 305 KLRVFERV 312 >gi|240948415|ref|ZP_04752793.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305] gi|240297241|gb|EER47799.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305] Length = 314 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MSDTLHKHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAHTI---TDPRFQIIHTAFSAIPQVCEDLDLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ ++Q +++DLT +L GEE+ A RIA AIV +++ Sbjct: 118 SFMRDGPLDMRMDTSKGLSAAEWLDQVSIEDLTWVLKEFGEERFAKRIATAIVNFNKTSS 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + T+ L + K+ HPATRSFQA+RIF+N+E++EL + L SA L G Sbjct: 178 QKITRTLQLAQIISDAVPFKDKHKHPATRSFQAIRIFINSELDELEKALNSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDV 300 L ++SFHSLEDR+VK+F S R + ++I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTI-GKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRVAEK 312 >gi|307256031|ref|ZP_07537819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865453|gb|EFM97348.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 313 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPIFESELNKNIPLKIIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|255971443|ref|ZP_05422029.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T1] gi|255974058|ref|ZP_05424644.1| mraW [Enterococcus faecalis T2] gi|256617913|ref|ZP_05474759.1| mraW [Enterococcus faecalis ATCC 4200] gi|256761747|ref|ZP_05502327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T3] gi|256957082|ref|ZP_05561253.1| mraW [Enterococcus faecalis DS5] gi|256960173|ref|ZP_05564344.1| mraW [Enterococcus faecalis Merz96] gi|256962585|ref|ZP_05566756.1| mraW [Enterococcus faecalis HIP11704] gi|257077878|ref|ZP_05572239.1| mraW [Enterococcus faecalis JH1] gi|257081242|ref|ZP_05575603.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol] gi|257083900|ref|ZP_05578261.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1] gi|257086348|ref|ZP_05580709.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis D6] gi|257089398|ref|ZP_05583759.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188] gi|257415608|ref|ZP_05592602.1| mraW [Enterococcus faecalis AR01/DG] gi|257418579|ref|ZP_05595573.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11] gi|257421238|ref|ZP_05598228.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98] gi|294780578|ref|ZP_06745941.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1] gi|300859663|ref|ZP_07105751.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD Ef11] gi|30179792|sp|O07104|RSMH_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|255962461|gb|EET94937.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T1] gi|255966930|gb|EET97552.1| mraW [Enterococcus faecalis T2] gi|256597440|gb|EEU16616.1| mraW [Enterococcus faecalis ATCC 4200] gi|256682998|gb|EEU22693.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T3] gi|256947578|gb|EEU64210.1| mraW [Enterococcus faecalis DS5] gi|256950669|gb|EEU67301.1| mraW [Enterococcus faecalis Merz96] gi|256953081|gb|EEU69713.1| mraW [Enterococcus faecalis HIP11704] gi|256985908|gb|EEU73210.1| mraW [Enterococcus faecalis JH1] gi|256989272|gb|EEU76574.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol] gi|256991930|gb|EEU79232.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1] gi|256994378|gb|EEU81680.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis D6] gi|256998210|gb|EEU84730.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188] gi|257157436|gb|EEU87396.1| mraW [Enterococcus faecalis ARO1/DG] gi|257160407|gb|EEU90367.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11] gi|257163062|gb|EEU93022.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98] gi|294452405|gb|EFG20844.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1] gi|300850481|gb|EFK78230.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD Ef11] gi|323480228|gb|ADX79667.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis 62] Length = 318 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 165/316 (52%), Gaps = 11/316 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVS 72 H VLL++ + L P V +D T G G+S ++ A D+D A++ Sbjct: 3 EEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALA 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSY 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P + Sbjct: 123 HQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIE 182 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L G + Sbjct: 183 TTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRI 242 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK F S + + IT+K ++P+ +++ N Sbjct: 243 SVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 302 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 303 RSRSAKLRIAEKIKSR 318 >gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius LAA1] gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius LAA1] Length = 316 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 183/306 (59%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + L P PG V +DAT G GG++ + G VIA D+D A++ + Sbjct: 5 HETVLLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEP 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R Y + +L +A F+++++ + VDGV+FDLGVSS Q D +RGFS+ GPL Sbjct: 65 LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A ++VN+ + ++L RI+ GEE+ A+ IA AI + R P +TT +L+ Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAIARARSKKPIETTTELA 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + + + + HPA R+FQA+RI VN+E+ L +G+ +A +AL+ GG L V++FH Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + + + + + +++K V P+ E++ N R+RSAK Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304 Query: 311 LRAGMR 316 LRA + Sbjct: 305 LRAFEK 310 >gi|94501904|ref|ZP_01308414.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65] gi|94425957|gb|EAT10955.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65] Length = 308 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ VLL + + LN P + +D TFG GG+++ VI +D+DP A++ Sbjct: 1 MSKHITVLLHEAVEALNQDPDGLYVDCTFGRGGHTKLLLDQLSEQGRVIGIDKDPRAIAT 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 GQE M ++F + +F+QL+++V + GV+ DLGVSS Q+D +RGFSF + Sbjct: 61 GQELMAQ-DQRFQICHGSFAQLREFVEAHGQGKELSGVLMDLGVSSPQLDEAERGFSFMQ 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ GI+A + + A+ +++ + GEE+ + R+A AIV+RR PF T Sbjct: 120 DGPLDMRMNTEAGITAQEWIATASEEEIANVFYEFGEERASRRLARAIVERRAIEPFTRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ +I+ + N+ HPATRSFQ LRIF+NNE+ +L L + L GG L+V+ Sbjct: 180 LDLAEVIKHAHPRWEKNK-HPATRSFQGLRIFLNNELGDLESVLDETVEMLAKGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F + + K + ++E+V N RSRS Sbjct: 239 SFHSLEDRIVKRFIRDKEKGPQLPPDLPIMEQDAPRPLKHIGKAIKASKEEVEQNVRSRS 298 Query: 309 AKLRAGMR 316 A +R + Sbjct: 299 AIMRVAEK 306 >gi|259047019|ref|ZP_05737420.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Granulicatella adiacens ATCC 49175] gi|259036338|gb|EEW37593.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Granulicatella adiacens ATCC 49175] Length = 314 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 103/313 (32%), Positives = 171/313 (54%), Gaps = 11/313 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H+ VLL + + L+ P + +D T G G+S+ ++ D+D A+ Sbjct: 1 MFKHITVLLHETVDALSIKPDGIYVDCTLGGAGHSQYLLSQLTTGHLYCFDQDMQAIQHA 60 Query: 75 QETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + + A F QL+ + VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 KARLAKEVSEGKVTFIHANFRQLKIELGKLGVSKVDGILYDLGVSSPQLDQIERGFSYHQ 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S ++A ++VN+ + +L RI GEEK + +IA I + R +TT Sbjct: 121 NAKLDMRMDQSAPLTAEEIVNEWSYDELVRIFYRYGEEKFSKQIARNIERIRAQHRIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ ++ ++ HPA R FQA+RI VN+E+ + L A + + GG + V Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAIRIAVNDELAAIEDSLEQAFEVVSVGGRISV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK F +S A +++ P+ A FQ + KK ++P+ E++ N R Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEKAPKNLPILPTEEEKAPFQLVNKKPILPSLEEITENSR 300 Query: 306 SRSAKLRAGMRTV 318 S+SAKLR + Sbjct: 301 SQSAKLRVIEKIK 313 >gi|167461086|ref|ZP_02326175.1| hypothetical protein Plarl_00698 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 317 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL E+ + L+ P + +D T G G+S ++ALD+D A++ Sbjct: 1 MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124 Q + +Y+++ + + F +L+ VDG++FDLGVSS Q+D +RG Sbjct: 61 AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ LDMRM S +A +VN+ +++ RIL + GEEK + +IA +IVK R++ Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT +L +I++ + + + + HPA RSFQALRI VN+E+ L A + L G Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K+ FA GK + + + + +K + +++++A Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKGILKLVNRKPITASEKELA 300 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RSAKLR + Sbjct: 301 YNPRARSAKLRIAEK 315 >gi|315026965|gb|EFT38897.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2137] Length = 322 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 11/320 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68 + H VLL++ + L P V +D T G G+S ++ A D+D Sbjct: 3 QMMTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQ 62 Query: 69 FAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A++ + ++ Y K Q + ++ F +++ + + VDG+++DLGVSS Q+D +R Sbjct: 63 KALAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAER 122 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM ++A +V N + +L +I GEEK + +IA I + R+ Sbjct: 123 GFSYHQDAPLDMRMDQDAPLTAREVGNTYSYSELVKIFFRYGEEKFSKQIAREIERVREK 182 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT +L +I+ + + HPA R FQA+RI VN+E+ + + L A L Sbjct: 183 QPIETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAK 242 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+VK F S + + IT+K ++P+ ++ Sbjct: 243 NGRISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSEL 302 Query: 301 AFNRRSRSAKLRAGMRTVER 320 + N RSRSAKLR + R Sbjct: 303 SENNRSRSAKLRIAEKIKSR 322 >gi|258438778|ref|ZP_05689931.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299] gi|257848037|gb|EEV72030.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299] Length = 311 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I + P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHCEQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|27467772|ref|NP_764409.1| hypothetical protein SE0854 [Staphylococcus epidermidis ATCC 12228] gi|30173015|sp|Q8CSX7|RSMH_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27315316|gb|AAO04451.1|AE016746_241 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|329730036|gb|EGG66427.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU144] gi|329736180|gb|EGG72452.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU028] Length = 311 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T +D+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|190149279|ref|YP_001967804.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262590|ref|ZP_07544221.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|263446582|sp|B3GZK0|RSMH_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189914410|gb|ACE60662.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872088|gb|EFN03801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 313 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPSGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|261867472|ref|YP_003255394.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412804|gb|ACX82175.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D11S-1] Length = 322 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 172/325 (52%), Gaps = 18/325 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP AV+ Q+ +F + TFS++ VDG++ DLGVSS Q+D Sbjct: 61 RDPQAVAEAQKI---QDSRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM GISA++ + Q + +DL +L GEE+ A RIA IV Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + L+ +Q K+ HPATRSFQA+RI++N E++EL L+SA Sbjct: 178 KSAVQNGGEFLARTLQLAELITQAVPFKDKYKHPATRSFQAIRIYINAELDELENVLQSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 L G L V+SFHSLEDR+VK+F +S + + + + + K + Sbjct: 238 LSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 +P++ ++ N R+RSA LR R Sbjct: 298 MPSEAEIVQNPRARSAVLRIAERIN 322 >gi|254486962|ref|ZP_05100167.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101] gi|214043831|gb|EEB84469.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101] Length = 330 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 144/326 (44%), Positives = 199/326 (61%), Gaps = 6/326 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M++A H PVLL ++A + P LD TFGAGGY+R G+ VIA+DRD Sbjct: 1 MTAASDTPSAPHTPVLLRPLLAAVAPVY-GRWLDGTFGAGGYTRGLLDAGADQVIAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A +Y ++ + Q FS++ +Y + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAASWAGEYGDRLIMQQGVFSRMDEYAQN--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV++R+ AP T Sbjct: 118 MRDGPLDMRMSQEGPSAADIVNEAEEEIIANILFQFGEERASRRIAKAIVRQREEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ L++ + SK + HPATRSFQALRI VNNE EL +GL +AE+ALK GG L V Sbjct: 178 TLELARLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFEGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G + P F +K + P +++ N RS Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEMESEPPQFIVKKRKAIGPDAQELEENPRS 297 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSAKLR +RT + D + +P Sbjct: 298 RSAKLRVAIRTDAPAGAVDAKSIGMP 323 >gi|302671225|ref|YP_003831185.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus B316] gi|302395698|gb|ADL34603.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus B316] Length = 313 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 95/313 (30%), Positives = 161/313 (51%), Gaps = 9/313 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H VLL + + LN P + LD T G G+S G ++ D+D A++ Sbjct: 1 MEFKHYSVLLHECLDNLNIKPDGIYLDGTLGGAGHSFHIAERLDKGGHLYGTDQDEDAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + ++ ++ + + + + GVDG++ DLGVSS Q+D +RGF++++ Sbjct: 61 AATKRLEPFSDRVTIIRDNYENAVTRLKNLGVTGVDGILLDLGVSSYQLDNAERGFTYKE 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A D+VN + ++ I+ GE+K A IA I R AP +TT Sbjct: 121 DVPLDMRMDQRQTLTARDIVNDYSETEIFHIIRDYGEDKFAKNIAKHICIERAKAPIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I+ + + HP+ R++QA+RI +N E++ L L L GG L V Sbjct: 181 FQLNDIIKAAIPAKMREKGGHPSKRTYQAIRIALNRELDVLQNSLDGFIDFLNPGGRLCV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F + + + + +T+K ++P+ +++A N+RS Sbjct: 241 ITFHSLEDRITKNNFRTNENPCTCPPNFPVCVCGKKSKGRVVTRKPILPSDQELAENKRS 300 Query: 307 RSAKLRAGMRTVE 319 +SAKLR + E Sbjct: 301 QSAKLRVFEKVSE 313 >gi|291544487|emb|CBL17596.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. 18P13] Length = 307 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 124/305 (40%), Positives = 169/305 (55%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VL E+ I L P + +D T G G++ K+ G +IALDRDP AV + Sbjct: 5 HISVLPEETIEGLGVKPDGIYVDGTVGGAGHALRIAKLLTDGGKLIALDRDPDAVKTADK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y Q+ FSQ++ + VDGV+ DLGVSS Q+D G RGFS+ PL Sbjct: 65 RLAQYPAVVV--QSNFSQIRQVLDSLGISLVDGVLLDLGVSSHQLDTGSRGFSYHVDAPL 122 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS +G+SA D+VN A+ ++L RIL GEEK A RI IV+ RQ P +TT L+ Sbjct: 123 DMRMSQTGVSARDLVNTASPEELVRILFEYGEEKFARRIVAEIVEARQKEPIETTLQLAE 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ V +P ++FQA+RI VN E++ L GL +A LK GG L V++FHSL Sbjct: 183 LIKAGVPAKARREKNPCKKTFQAIRIAVNGELDHLTSGLDAAFACLKPGGRLAVITFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ FA + H + + +K + E++ N RSRSAKLR Sbjct: 243 EDRLVKQKFAGWCKGCICPPDFPVCVCGHTPQGRLVNRKPIEAKPEELEENNRSRSAKLR 302 Query: 313 AGMRT 317 R+ Sbjct: 303 IIERS 307 >gi|295102284|emb|CBK99829.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii L2-6] Length = 322 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 171/314 (54%), Gaps = 8/314 (2%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALD 65 + +H+PVLL + + LN P LD T G G+SR G +++LD Sbjct: 8 AQFDPASFEHIPVLLNECLDGLNIDPAGTYLDGTAGGAGHSRQIALRLDGAKGGRLVSLD 67 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 +DP AV + + ++ Q + + + ++G + DLGVSS Q+D RG Sbjct: 68 QDPDAVQTARARLAGLPATVVQINFRYAGQALESLGIEKINGALLDLGVSSHQLDDAARG 127 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS++ PLDMRMS G +A+D+VN A+ ++L+RIL GEE A +IA IV+ R++AP Sbjct: 128 FSYRADAPLDMRMSQQGETAADLVNTASREELSRILRDYGEEPYAWQIAGRIVEARETAP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG Sbjct: 188 IETTLQLADIVAGAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302 L V++FHSLEDRLVK F S A + IT+K + ++++ Sbjct: 248 RLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADKQELEE 307 Query: 303 NRRSRSAKLRAGMR 316 NRRSRSA LR + Sbjct: 308 NRRSRSAHLRVLEK 321 >gi|57866678|ref|YP_188327.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis RP62A] gi|242242461|ref|ZP_04796906.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis W23144] gi|68565427|sp|Q5HQ13|RSMH_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57637336|gb|AAW54124.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis RP62A] gi|242234035|gb|EES36347.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis W23144] gi|319401527|gb|EFV89737.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis FRI909] Length = 311 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHND 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVNQ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T +D+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|160915591|ref|ZP_02077802.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991] gi|158432711|gb|EDP11000.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991] Length = 311 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL + + L + +D T G GG+S + ++ A DRD A+ Sbjct: 1 MSKHYSVLLSECLEGLAIRADGIYVDGTLGRGGHSAQILQRIPKGHLYAFDRDETAIKES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + F+L FS L++ + + +DG++ DLGVSS Q D G+RGFS++ Sbjct: 61 KERLLSIASNFTLIHNQFSMLKEELSNRGIYQIDGMLLDLGVSSPQFDDGERGFSYRYDA 120 Query: 132 PLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S A DVVN + +L RI GEEK A +IA I K+R P TT + Sbjct: 121 PLDMRMDQSQQKNAYDVVNSYDYHELVRIFYQYGEEKFAKQIAKNIEKQRAIKPIATTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ ++ N + HPA + FQA+RI VN+E++E+ L+ A L GG L V+S Sbjct: 181 LVEVIKASLPAKVLNKKGHPAKKVFQAIRIEVNDELKEIETVLQDAMDMLAVGGRLCVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK+ F RS + + P + ++ + +K ++ ++E++ N RS Sbjct: 241 FQSLEDRIVKEAFHERSTPKKVDKRIPMLPQDIETVDYRLVNRKPIIASEEELEENNRSH 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRIIERV 310 >gi|197302579|ref|ZP_03167634.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC 29176] gi|197298477|gb|EDY33022.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC 29176] Length = 326 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H+ VLL + + LN P + +DAT G GG++ C +I +D+D A+ Sbjct: 16 MAFEHISVLLYETVDGLNVKPDGIYVDATLGGGGHAYEVCSRLGSQGRLIGIDQDADAIR 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + E+ ++ ++ + ++ + VDG+ DLGVSS Q+D +RGFS++ Sbjct: 76 AAGKRLECFGEKVTIVRSNYCDMKQQLQKLGIDKVDGITVDLGVSSYQLDTAERGFSYRV 135 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D++N + +L R++ GE++ A IA IV R+ AP +TT Sbjct: 136 DAPLDMRMDQRQKMTARDIINDYSESELYRVIRDYGEDRFAKNIAKHIVAERKKAPIETT 195 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I + + HP+ R+FQA+RI +N+E++ L L + L GG L + Sbjct: 196 GQLNEIISHAIPMKVRKTSGHPSKRTFQAIRIELNHELDVLRDTLDDMIELLNPGGRLCI 255 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F H + + + IT+K ++P++E++ N RS Sbjct: 256 ITFHSLEDRIVKSSFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEVNSRS 315 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 316 KSAKLRIFER 325 >gi|126741287|ref|ZP_01756965.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6] gi|126717605|gb|EBA14329.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6] Length = 330 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 155/330 (46%), Positives = 203/330 (61%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRD 67 M++ + G H+PVLL ++A + P LD TFGAGGY+R + G S VI +DRD Sbjct: 1 MTTDQNTANGPHIPVLLRPLLAAVAPVS-GRWLDGTFGAGGYTRGLLEEGASQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q +Y ++ L + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAQPWATEYGDRLLLQEGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG SA+D+V L IL GEE+ + RIA AIVK R P T Sbjct: 118 MRDGPLDMRMSQSGPSAADLVANLEEAQLADILFQFGEERASRRIAKAIVKARAEEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+S+++ + SK + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLQLASIVEGCLPRSKPGQSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK A R+ F+ +T+K V P E++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPELEEVETQFELVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPT 335 RSA+LR G RT E + +P+L Sbjct: 298 RSARLRVGRRTMAEPVAISGKELGMPQLKE 327 >gi|57650291|ref|YP_186055.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus COL] gi|151221301|ref|YP_001332123.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. Newman] gi|68565417|sp|Q5HGQ2|RSMH_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826643|sp|A6QG79|RSMH_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57284477|gb|AAW36571.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus COL] gi|150374101|dbj|BAF67361.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. Newman] Length = 311 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHRVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|15924169|ref|NP_371703.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus Mu50] gi|15926762|ref|NP_374295.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus N315] gi|21282791|ref|NP_645879.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MW2] gi|49483342|ref|YP_040566.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA252] gi|49486019|ref|YP_043240.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MSSA476] gi|148267671|ref|YP_001246614.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH9] gi|150393729|ref|YP_001316404.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH1] gi|156979500|ref|YP_001441759.1| hypothetical protein SAHV_1169 [Staphylococcus aureus subsp. aureus Mu3] gi|161509356|ref|YP_001575015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140649|ref|ZP_03565142.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314966|ref|ZP_04838179.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733582|ref|ZP_04867747.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005966|ref|ZP_05144567.2| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425233|ref|ZP_05601658.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053] gi|257427893|ref|ZP_05604291.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322] gi|257430526|ref|ZP_05606908.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus subsp. aureus 68-397] gi|257433287|ref|ZP_05609645.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus E1410] gi|257436129|ref|ZP_05612176.1| methylase MraW [Staphylococcus aureus subsp. aureus M876] gi|257795765|ref|ZP_05644744.1| methylase MraW [Staphylococcus aureus A9781] gi|258415989|ref|ZP_05682259.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763] gi|258419736|ref|ZP_05682703.1| methylase MraW [Staphylococcus aureus A9719] gi|258444516|ref|ZP_05692845.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115] gi|258447651|ref|ZP_05695795.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus A6300] gi|258449493|ref|ZP_05697596.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224] gi|258451877|ref|ZP_05699898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948] gi|258454872|ref|ZP_05702836.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937] gi|262048753|ref|ZP_06021635.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30] gi|262051681|ref|ZP_06023900.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3] gi|269202794|ref|YP_003282063.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ED98] gi|282892665|ref|ZP_06300900.1| methylase MraW [Staphylococcus aureus A8117] gi|282903731|ref|ZP_06311619.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus C160] gi|282905495|ref|ZP_06313350.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260] gi|282908470|ref|ZP_06316300.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910752|ref|ZP_06318555.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913955|ref|ZP_06321742.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M899] gi|282916429|ref|ZP_06324191.1| methylase MraW [Staphylococcus aureus subsp. aureus D139] gi|282918877|ref|ZP_06326612.1| methylase MraW [Staphylococcus aureus subsp. aureus C427] gi|282919960|ref|ZP_06327689.1| methylase MraW [Staphylococcus aureus A9765] gi|282924000|ref|ZP_06331676.1| methylase MraW [Staphylococcus aureus subsp. aureus C101] gi|282929224|ref|ZP_06336799.1| methylase MraW [Staphylococcus aureus A10102] gi|283770241|ref|ZP_06343133.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283957922|ref|ZP_06375373.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus A017934/97] gi|284024103|ref|ZP_06378501.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 132] gi|293500988|ref|ZP_06666839.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424] gi|293509946|ref|ZP_06668655.1| methylase MraW [Staphylococcus aureus subsp. aureus M809] gi|293526535|ref|ZP_06671220.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M1015] gi|294848172|ref|ZP_06788919.1| methylase MraW [Staphylococcus aureus A9754] gi|295407117|ref|ZP_06816918.1| methylase MraW [Staphylococcus aureus A8819] gi|295427665|ref|ZP_06820297.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276145|ref|ZP_06858652.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MR1] gi|297208179|ref|ZP_06924609.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245997|ref|ZP_06929856.1| methylase MraW [Staphylococcus aureus A8796] gi|297591377|ref|ZP_06950015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MN8] gi|300912257|ref|ZP_07129700.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH70] gi|304381261|ref|ZP_07363914.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|42560201|sp|P60392|RSMH_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560202|sp|P60393|RSMH_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560203|sp|P60394|RSMH_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|48474288|sp|P60485|RSMH_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54036187|sp|Q6GA33|RSMH_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54036188|sp|Q6GHQ6|RSMH_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826623|sp|A7X1B8|RSMH_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826627|sp|A6U0Z9|RSMH_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826631|sp|A5IS65|RSMH_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826654|sp|A8Z3M0|RSMH_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831474|sp|Q2FHQ8|RSMH_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2149891|gb|AAC45622.1| unknown [Staphylococcus aureus] gi|13700978|dbj|BAB42274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246949|dbj|BAB57341.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus Mu50] gi|21204229|dbj|BAB94927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241471|emb|CAG40157.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244462|emb|CAG42890.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147740740|gb|ABQ49038.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH9] gi|149946181|gb|ABR52117.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH1] gi|156721635|dbj|BAF78052.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368165|gb|ABX29136.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728452|gb|EES97181.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271690|gb|EEV03828.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053] gi|257274734|gb|EEV06221.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322] gi|257278654|gb|EEV09273.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus subsp. aureus 68-397] gi|257281380|gb|EEV11517.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus E1410] gi|257284411|gb|EEV14531.1| methylase MraW [Staphylococcus aureus subsp. aureus M876] gi|257789737|gb|EEV28077.1| methylase MraW [Staphylococcus aureus A9781] gi|257839325|gb|EEV63799.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763] gi|257844321|gb|EEV68703.1| methylase MraW [Staphylococcus aureus A9719] gi|257850009|gb|EEV73962.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115] gi|257853842|gb|EEV76801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus A6300] gi|257857481|gb|EEV80379.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224] gi|257860485|gb|EEV83312.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948] gi|257863255|gb|EEV86019.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937] gi|259160416|gb|EEW45441.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3] gi|259163209|gb|EEW47769.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30] gi|262075084|gb|ACY11057.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ED98] gi|269940673|emb|CBI49052.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282313972|gb|EFB44364.1| methylase MraW [Staphylococcus aureus subsp. aureus C101] gi|282316687|gb|EFB47061.1| methylase MraW [Staphylococcus aureus subsp. aureus C427] gi|282319869|gb|EFB50217.1| methylase MraW [Staphylococcus aureus subsp. aureus D139] gi|282322023|gb|EFB52347.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M899] gi|282325357|gb|EFB55666.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327532|gb|EFB57815.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330787|gb|EFB60301.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260] gi|282589183|gb|EFB94280.1| methylase MraW [Staphylococcus aureus A10102] gi|282594676|gb|EFB99660.1| methylase MraW [Staphylococcus aureus A9765] gi|282595349|gb|EFC00313.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus C160] gi|282764662|gb|EFC04787.1| methylase MraW [Staphylococcus aureus A8117] gi|283460388|gb|EFC07478.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283470389|emb|CAQ49600.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ST398] gi|283790071|gb|EFC28888.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus A017934/97] gi|285816861|gb|ADC37348.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus 04-02981] gi|290920607|gb|EFD97670.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M1015] gi|291095993|gb|EFE26254.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424] gi|291467396|gb|EFF09913.1| methylase MraW [Staphylococcus aureus subsp. aureus M809] gi|294824972|gb|EFG41394.1| methylase MraW [Staphylococcus aureus A9754] gi|294967970|gb|EFG43998.1| methylase MraW [Staphylococcus aureus A8819] gi|295128023|gb|EFG57657.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886918|gb|EFH25821.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177161|gb|EFH36415.1| methylase MraW [Staphylococcus aureus A8796] gi|297576263|gb|EFH94979.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MN8] gi|300886503|gb|EFK81705.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH70] gi|304340244|gb|EFM06185.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438444|gb|ADQ77515.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH60] gi|312829573|emb|CBX34415.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130970|gb|EFT86954.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196909|gb|EFU27252.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|329313847|gb|AEB88260.1| Ribosomal RNA small subunit methyltransferase H [Staphylococcus aureus subsp. aureus T0131] gi|329725033|gb|EGG61529.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21189] gi|329727402|gb|EGG63858.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21172] Length = 311 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|172057976|ref|YP_001814436.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum 255-15] gi|263447041|sp|B1YIU3|RSMH_EXIS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171990497|gb|ACB61419.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum 255-15] Length = 312 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 8/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H VL + I LN P + +D T G G+S K ++ A D+D A++ Sbjct: 1 MFEHETVLKWESIKGLNIKPDGIYVDCTLGGAGHSEEIVKQLTTGHLYAFDQDDVALAHA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y+ +F+L ++ F L++ + + VDG++FDLGVSS Q+D G+RGFS+ Sbjct: 61 AERLAAYEGRFTLIKSNFVHLKEELEARSVTKVDGILFDLGVSSPQLDEGERGFSYNFDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA +VVN+ DL RIL GEEK + +IA I K R+ AP +TT + Sbjct: 121 RLDMRMDQTSPLSAYEVVNEWPYNDLVRILFTYGEEKFSKQIARKIEKAREIAPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + ++ HPA R+FQA+RI VN+E+ + + A L GG L V++ Sbjct: 181 LVELIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVYQAIDLLAVGGRLCVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F +S + + + +T+K + +++ NRRSRS Sbjct: 241 FHSLEDRMCKQAFKEKSSLPELPQGLPMIPKEFEPELRLVTRKPITAGDDELDDNRRSRS 300 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 301 AKLRIVEKMKE 311 >gi|251810609|ref|ZP_04825082.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876390|ref|ZP_06285257.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis SK135] gi|251805769|gb|EES58426.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295415|gb|EFA87942.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis SK135] gi|329734446|gb|EGG70759.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU045] Length = 311 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T +D+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|163746120|ref|ZP_02153479.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45] gi|161380865|gb|EDQ05275.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45] Length = 327 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 148/320 (46%), Positives = 201/320 (62%), Gaps = 6/320 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL ++ + P V LD TFGAGGY+R F + G+ VIA+DRDP A E Sbjct: 11 HTPVLLRPILTAVAPVE-GVWLDGTFGAGGYTRGFLEAGAARVIAVDRDPLAFEMAAEWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ ++ Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K GPLDMRMS Sbjct: 70 GDFGDRITMQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDQAERGFSFMKDGPLDMRMS 127 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A + + IL GEE+ + RIA +IV+ R+ AP TT +L+ L++ Sbjct: 128 QDGPSAADLVNEAEEEIIANILFQYGEERASRRIAKSIVRAREVAPITTTLELAKLVEGC 187 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQALRI VNNE EL QGL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 188 LPRSKPGQSHPATRSFQALRIAVNNEYGELFQGLMAAERALKPGGKLAVVTFHSVEDRMV 247 Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G P+ F ++K + P +++ N RSRSAKLR RT Sbjct: 248 KRFLTARAGAGGNANRFAPALEQEAPQFTLKSRKAIGPDAQELDENPRSRSAKLRVATRT 307 Query: 318 VERSIEDD-SFVHLPRLPTL 336 S E D + +P + + Sbjct: 308 DAPSGEIDAKSIGMPMVRGI 327 >gi|299821551|ref|ZP_07053439.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601] gi|299817216|gb|EFI84452.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601] Length = 313 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL + + +L+ P + +DAT G G+S ++ A D+D A+ + Sbjct: 6 KHDTVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLNKKGHLYAFDQDQTAIDHAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y + ++ F +++ + + VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 66 ERLAPYTGSVTFVKSNFRFMKEALAEHGVTEVDGILYDLGVSSPQLDVRERGFSYHQDAE 125 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A +VVN+ +DL RI GEEK + +IA I +RR +TT +L Sbjct: 126 LDMRMDQEQSLTAKEVVNEWRYEDLVRIFFQYGEEKFSKQIAREIERRRSEKTIETTGEL 185 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HP R FQA+RI VN+E++ +++ L A LK G + V++F Sbjct: 186 VDIIKTAIPAPARRKGGHPGKRVFQAIRIAVNDELDAVSESLEKALLLLKTNGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F ++ R + + + F+ +T+K ++P++ ++A N R+RSA Sbjct: 246 HSLEDRITKQLFKQKTTAQETPRGLPVIPDEYQPDFELVTRKPILPSEAEMATNNRARSA 305 Query: 310 KLRAGMR 316 KLR + Sbjct: 306 KLRVIAK 312 >gi|258423777|ref|ZP_05686663.1| methylase MraW [Staphylococcus aureus A9635] gi|257846009|gb|EEV70037.1| methylase MraW [Staphylococcus aureus A9635] Length = 311 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVEGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|152968667|ref|YP_001333776.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893062|ref|YP_002917796.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae NTUH-K2044] gi|262044874|ref|ZP_06017917.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012015|ref|ZP_08307232.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3] gi|263456196|sp|A6T4M5|RSMH_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150953516|gb|ABR75546.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545378|dbj|BAH61729.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037843|gb|EEW39071.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534004|gb|EGF60656.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3] Length = 313 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FSQL +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---DDPRFSIVHGPFSQLAEYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVI-AAAMPVKDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|270291462|ref|ZP_06197684.1| methylase MraW [Pediococcus acidilactici 7_4] gi|304385176|ref|ZP_07367522.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM 20284] gi|270280308|gb|EFA26144.1| methylase MraW [Pediococcus acidilactici 7_4] gi|304329370|gb|EFL96590.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM 20284] Length = 317 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 169/315 (53%), Gaps = 11/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T H VLLE+ +A LN V +D T G GG+S+ ++ + D+D A+ Sbjct: 2 TEFKHTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127 Q+ + Y +Q + +A F L++ + +G+D +++DLGVSS Q D RGFS+ Sbjct: 62 YNQDHLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM S +A VVN+ + DL RI GEEK A ++A I K R+ P Sbjct: 122 RYDAPLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPIV 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA R FQA+RI VN+E+ L + L A L G + Sbjct: 182 TTGELVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK+ F ++ + F+ + +K +VP+++++ NR Sbjct: 242 SVITFQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPHFKLVNRKPIVPSEDELKENR 301 Query: 305 RSRSAKLRAGMRTVE 319 R+ SAKLR + E Sbjct: 302 RAHSAKLRIIEKLQE 316 >gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45] gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45] Length = 330 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 145/333 (43%), Positives = 198/333 (59%), Gaps = 10/333 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 +A HVPVLL ++ + P +D TFGAGGYSR + G+ VI +DRDP Sbjct: 4 AADTSDNAPHVPVLLRPLLDAVAPVS-GTWVDGTFGAGGYSRGLLEAGADRVIGIDRDPL 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A E + Y + L + F+ + YV G DGVV DLGVSSMQ+D +RGFSFQ+ Sbjct: 63 AHRMAAEWIGSYGGRLELVEGNFADMDQYVS--GADGVVLDLGVSSMQLDIAERGFSFQR 120 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM +G SA+++V + + L +L GEE+ + RIA AIVK R+ P +TT Sbjct: 121 DGPLDMRMEQAGESAAELVKRLDETTLADVLYTYGEERASRRIARAIVKAREQEPIETTA 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS++++ + K + HPATRSFQALRI VN+E L +GL +AEKALK GG L VV+ Sbjct: 181 RLSAIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAEKALKPGGFLCVVT 240 Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+EDR+VK+F +RSG+ R+ A F ++T+K + P +++A N RSRS Sbjct: 241 FHSVEDRMVKRFLQARSGRLGAVSRYAPVVEAEEPQFVTMTRKAIGPDDDELAANPRSRS 300 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 A+LR G RT + P + Q RG Sbjct: 301 ARLRIGQRTSADPGDVS-----PDTLNMPQLRG 328 >gi|302332784|gb|ADL22977.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JKD6159] Length = 311 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQAAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVVPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|315639624|ref|ZP_07894764.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus italicus DSM 15952] gi|315484585|gb|EFU75041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus italicus DSM 15952] Length = 318 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 101/315 (32%), Positives = 165/315 (52%), Gaps = 11/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VL ++ + L P + +D T G G+S ++ A D+D A+ Sbjct: 1 MEFQHYTVLKKETVEGLAIKPDGIYVDCTLGGAGHSEYLLSQLGPDGHLYAFDQDQKALD 60 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ ++ + K Q + ++ F +L+ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 FAKQRLQSFVDKGQVTFIKSNFRELKSKLAELDVMKVDGILYDLGVSSPQLDEAERGFSY 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM S SA D+VN + +L +I GEEK + +IA I + R + P + Sbjct: 121 HQDAPLDMRMDQSASFSAHDLVNTYSYNELVKIFFRYGEEKFSKQIAREIERVRANQPIE 180 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + ++ HPA R FQA+RI VN+E+ + + L A + L G + Sbjct: 181 TTSELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIELLAIHGRI 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDRLVK F S + + + + I +K + ++ ++ N Sbjct: 241 SVITFHSLEDRLVKNMFKEYSQVKELPPGLPVIPDEYQPMLTVINRKPITASELELEENN 300 Query: 305 RSRSAKLRAGMRTVE 319 RSRSAKLR + E Sbjct: 301 RSRSAKLRIVEKVKE 315 >gi|56964129|ref|YP_175860.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16] gi|115311580|sp|Q5WFG1|RSMH_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56910372|dbj|BAD64899.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16] Length = 314 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ VL E+ + L PG V +D T G GG+S ++ A D+D A+S Sbjct: 1 MFSHITVLKEESVNGLAVKPGGVYVDCTLGGGGHSERILTALAGEGHLYAFDQDEAALSF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + +KE + ++ F +++ + + VDG++FDLGVSS Q+D RGFS+ + Sbjct: 61 AAEKLSRFKENITFIRSNFRHIKEELRMRGVDKVDGILFDLGVSSPQLDEASRGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN L I+ GEEK + +IA I R P +TT Sbjct: 121 APLDMRMDQSASLTAREVVNTWPFAKLHSIISRYGEEKFSKQIARKIEAYRLKQPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R+FQA+RI VN+E+ L + L GG + V+ Sbjct: 181 ELVDIIKEAIPAPARRAGGHPAKRTFQAIRIAVNDELGAFEDALTDGFELLNEGGRMAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F ++ + + A F ITKK +V E++ N R+R Sbjct: 241 TFHSLEDRLCKQMFKEKTKLPDLPKGLPIIPADQKAPFALITKKPIVANDEEIKANNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIIEK 309 >gi|289551038|ref|YP_003471942.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis HKU09-01] gi|315658534|ref|ZP_07911406.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis M23590] gi|289180570|gb|ADC87815.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis HKU09-01] gi|315496863|gb|EFU85186.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis M23590] Length = 311 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN P V +D T G G++ ++IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKPDGVYVDCTLGGAGHALYLLNQLNDEGHLIAIDQDTTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKAHLHKVTFVHNNFRELTHILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + SA +VVN+ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDRTQTLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEAHRELQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K G + V+ Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I + + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKLKRVNRKPITATEEDLNQNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|328957120|ref|YP_004374506.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4] gi|328673444|gb|AEB29490.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4] Length = 318 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 170/312 (54%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T +H VLL + + L+ +P + +D T G G+S ++ A D+D A+ Sbjct: 2 TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLDENGHLFAFDQDERAIE 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +Y K + +A F +++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 62 NAKVRLAEYVEKGMVTFIKANFRNIKEELTERGINEVDGILYDLGVSSPQLDEAERGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM ++A DVVN+ + DL RI GEEK + +IA I R+ P + Sbjct: 122 HQDAPLDMRMDTDAPLTAKDVVNEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKPIE 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L LI+ + + HPA R FQA+RI VN+E+ + L A + L GG + Sbjct: 182 TTSELVELIKSGIPAPARRKGGHPAKRVFQAIRIAVNDELSSVEDSLEQAIELLAIGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK F S R + + + IT+K ++P++E++A N Sbjct: 242 SVISFHSLEDRIVKTIFKDHSKGPELPRGLPVIPDGFLPELKLITRKPILPSEEELAVNN 301 Query: 305 RSRSAKLRAGMR 316 RSRSAKLR + Sbjct: 302 RSRSAKLRIAEK 313 >gi|260912995|ref|ZP_05919480.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pasteurella dagmatis ATCC 43325] gi|260632985|gb|EEX51151.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pasteurella dagmatis ATCC 43325] Length = 321 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 117/324 (36%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNKQNTFSSPEHITVLLNEAVDGLALKERGIYIDGTFGRGGHSRLILSKLSDNGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEANKI---QDARFHIEHNSFSAIPEICEKLGLTGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SAS+ + Q + DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSESDLAWVLKTFGEERFAKRIASAIVNYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + L+ +Q K+ HPATRSFQA+RIF+N E++EL L+SA Sbjct: 178 KSAQQNGSGPLTRTLQLAELIAQSVPFKDKHKHPATRSFQAIRIFINAELDELESVLQSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293 L G L ++SFHSLEDR+VK F +S + + Q++ K + Sbjct: 238 LSVLAPEGRLSIISFHSLEDRMVKHFMRKQSKGESLPKGLPLREDQIKRSQTLKTIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 +P++E+ A N RSRSA LR + Sbjct: 298 MPSEEEQANNPRSRSAVLRVAEKI 321 >gi|82750786|ref|YP_416527.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus RF122] gi|123549021|sp|Q2YXE3|RSMH_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82656317|emb|CAI80731.1| S-adenosyl-methyltransferase [Staphylococcus aureus RF122] Length = 311 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++++ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKKVLKEHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + I +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRINRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|329924124|ref|ZP_08279357.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5] gi|328940856|gb|EGG37166.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5] Length = 317 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL ++ L P + +D T G G+S +IALD+D +A++ Sbjct: 1 MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E M+ Y ++ +L + F L++ VDG++FDLGVSS Q D G+RG Sbjct: 61 AREAMKPYADRITLVKTNFRDLEEVLRSEVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR + Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P QTT +L +I++ + + + HPA RSFQA RI VN+E+ L A + L G Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ F S K + + +K ++P+ E++ Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 ESNPRARSAKLRIAEK 316 >gi|229019122|ref|ZP_04175956.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1273] gi|229025365|ref|ZP_04181783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1272] gi|228735950|gb|EEL86527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1272] gi|228742138|gb|EEL92304.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1273] Length = 302 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 9/300 (3%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 ++ + L+ P +D T G GG+S G +IA D+D A+ +E Y Sbjct: 2 KETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSYG 61 Query: 83 EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ PLDMRM Sbjct: 62 EQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMDQ 121 Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 ++A DVVN + + L RI GEEK + +I I R++ +TT +L LI++ Sbjct: 122 DAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELVELIKEG 181 Query: 199 VYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + HPA R FQA+RI VN+E++ + L SA +K GG + V++FHSLEDR+ Sbjct: 182 IPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDRI 241 Query: 258 VKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K F S I + + IT+K ++P+ ++ N R+RSAKLR + Sbjct: 242 CKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAEK 301 >gi|225028107|ref|ZP_03717299.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353] gi|224954577|gb|EEG35786.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353] Length = 315 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 167/306 (54%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H ++LE+VI L P + +D T G G+S K +I +D+D A+ + Sbjct: 5 HKSIMLEEVIESLAIKPNGIYVDGTLGGAGHSSEIVKRLGEDGRLIGIDQDGEAIEAATK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ YK++ ++ ++ ++Q+++ + D VDG++ DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLKPYKDKVTIVRSNYAQMKEVLRDLGIPKVDGILLDLGVSSYQLDNAERGFTYREDVPL 124 Query: 134 DMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + D+VN + +L I+ GE+K A IA IV+ RQ P +TT L Sbjct: 125 DMRMDQRQTKTAKDIVNDYSEMELYHIIRNYGEDKFAKNIAKHIVQARQKTPIETTGQLI 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI +N+E++ L L L G + +++FH Sbjct: 185 EVIKAAIPKKVRATGGHPAKKTFQAIRIELNHELDVLKNNLEDMIDLLNDEGRIAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + IT+K +VP +E++ N RS+SAK Sbjct: 245 SLEDRIVKNIFRTSERPCICPPEFPVCVCGRVSKGKVITRKPIVPGKEELEENSRSKSAK 304 Query: 311 LRAGMR 316 LR R Sbjct: 305 LRVFER 310 >gi|332187132|ref|ZP_08388872.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17] gi|332012832|gb|EGI54897.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17] Length = 326 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 135/316 (42%), Positives = 197/316 (62%), Gaps = 10/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS A++ H+PVLL++V+ L PG+ +D TFGAGGY+R+ G+ VIA DRDP Sbjct: 1 MSPAVND--APHIPVLLDEVLDALAILPGETHVDGTFGAGGYTRAMLGRGAKVIAFDRDP 58 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ GQ ++ +L FS L + VDGVV D+GVSSMQ+D +RGFSFQ Sbjct: 59 DAIANGQALIQAEPG-LALVHREFSGLDQA-LEAQVDGVVLDIGVSSMQLDQAERGFSFQ 116 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +G SA+D +N A+ + +L GEE ++ R+A AIV R T Sbjct: 117 GDGPLDMRMAQAGESAADFLNTADEAAIADVLYHYGEEPRSRRVAQAIVAARPLMR---T 173 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++++++ + + +++ PATR+FQA+RI VN E+EELA+GL +AE+ALK GG L +V Sbjct: 174 GELAAVVRRALGYRPHDKKDPATRTFQAIRIHVNRELEELAEGLAAAERALKPGGRLAIV 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+FF R+G++ +P A F ++ K V ++A N R+ Sbjct: 234 TFHSLEDRMVKRFFRERAGQLPGGSRHLPQQVAAQAPSFTAV-GKAVRAGAAELARNPRA 292 Query: 307 RSAKLRAGMRTVERSI 322 RSA LR RT + Sbjct: 293 RSATLRFATRTESPAW 308 >gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 333 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 133/312 (42%), Positives = 190/312 (60%), Gaps = 7/312 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PVLL++VI L+P G + +D TFGAGGYSR+ + + VIA DRDP A+ G Sbjct: 8 APHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAS 67 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GPL Sbjct: 68 LVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGPL 127 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM+ +G+SA +++N A KD+ +L + GEE+Q+ R+A AIV+ +A + L+ Sbjct: 128 DMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIVR--GTAFKRRLFRLAK 185 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G L VV+FHSL Sbjct: 186 VIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHSL 245 Query: 254 EDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F +G+ RH VF S + V + ++A N R+RSA LR Sbjct: 246 EDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATLR 305 Query: 313 AGMRTVERSIED 324 A RT ED Sbjct: 306 AVYRTETPFSED 317 >gi|194014300|ref|ZP_03052917.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061] gi|194013326|gb|EDW22891.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061] Length = 310 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + LN +D T G G+S +I D+D A+ Sbjct: 1 MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + D K ++ F L++ + ++ VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AREKLADSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S SA VVN+ +DL RI GEEK + +IA I + R+ AP +TT Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E++ + L A + L G + V+ Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + IT+K +V +++++ N R+R Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|114570636|ref|YP_757316.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10] gi|123127593|sp|Q0AMV9|RSMH_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114341098|gb|ABI66378.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10] Length = 334 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 132/332 (39%), Positives = 196/332 (59%), Gaps = 9/332 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 ++ H+PV++ +V+ L P G + +D TFGAGGYSR +I +DRDP Sbjct: 2 SVAPHIPVMMSEVLHALEPRSGALYIDGTFGAGGYSRGILSAADCKLIGIDRDPAVQPTA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++ +F+ +A FS + + VDG+V D+GVSSMQID +RGFSF + G Sbjct: 62 TQLVQASGGRFAFAEAPFSAMGEVLASRGIDQVDGIVLDIGVSSMQIDQAERGFSFMRKG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM+ SG +A+D VN+ +L I + GEE+++ RIA I R A +TT L Sbjct: 122 PLDMRMAASGPTAADAVNRLKEAELADIFYVYGEERRSRRIAKFICTARAEAKIETTDRL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + K+++IHPAT+ FQALRIFVN+E+ ELA+ L ++E+ L G L+VV+FH Sbjct: 182 AEIVTRAT-GGKHSKIHPATKVFQALRIFVNDELGELARALEASERLLAPLGRLVVVTFH 240 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F SR+G R+ A P F +T++ V + E+ A N R+RS Sbjct: 241 SLEDRMVKTFLRSRAGLAGGGGSRYEPAVEAGPAPSFSLLTRRAVSASDEEAAENPRARS 300 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLRA +R + D +H +P L++ Sbjct: 301 AKLRAAIRNEAPAWSDSPSLHTSIVP-LARLE 331 >gi|320179644|gb|EFW54593.1| rRNA small subunit methyltransferase H [Shigella boydii ATCC 9905] Length = 313 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN PG + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPGGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|300774256|ref|ZP_07084123.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum ATCC 33861] gi|300758935|gb|EFK55764.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum ATCC 33861] Length = 303 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 163/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + HVPV+L++ I L+ P V +D TFG GG+SR K + A D+DP A+ Sbjct: 2 SNVYHVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALE 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E+F+L F L++ K VDG++ DLGVSS Q D DRGFS + Sbjct: 62 NTIA-----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRF 116 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A V+N +DL RI G+ GE A +A +V R SAP +T Sbjct: 117 DADLDMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETV 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+K V K ++ H + FQALRI VN E+E L + L LK G L+V+ Sbjct: 177 AGLKEVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVM 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK F A K + + P FQ IT+K + ++E+++ N RSRS Sbjct: 235 SYHSLEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRS 292 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 293 AKLRVAEK 300 >gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp. indica ATCC 9039] gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp. indica ATCC 9039] Length = 355 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 152/327 (46%), Positives = 202/327 (61%), Gaps = 9/327 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQE 76 HVPVL E+V+A L+ G LDATFGAGGY+R+ + ++V+A+DRDP A++ G+ Sbjct: 17 ARHVPVLREEVVAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRA 76 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L FS L D DG+VFD+GVSSMQ+D +RGFSF+ GPL Sbjct: 77 LEAESAGRLILAHGRFSTLADIAAAEGIPAFDGIVFDIGVSSMQLDQPERGFSFRGEGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D+VN A+ + L I GEE+ + RIA AIV R PF TT+ L+ Sbjct: 137 DMRMESRGPSAADLVNTADEQRLADIFYYFGEERASRRIARAIVTDRAHTPFTTTRQLAE 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI + V K IHPATR FQALRI VN E+ EL + L +AE L+ GG L+VV+FHSL Sbjct: 197 LIAR-VNPGKPGDIHPATRVFQALRIAVNEELLELVRALAAAEALLREGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+F A+RSG+ AV +P P F K+ V+P+ E++A N R+RSAKL Sbjct: 256 EDRIVKQFLAARSGRGQAVSRPLPGEPALAPPTFILPGKQPVLPSPEEIAVNPRARSAKL 315 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338 R G+RT + +S L L TL + Sbjct: 316 RFGLRTAAPARGLES--GLLPLATLPE 340 >gi|157147494|ref|YP_001454813.1| S-adenosyl-methyltransferase MraW [Citrobacter koseri ATCC BAA-895] gi|263446032|sp|A8ALL4|RSMH_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157084699|gb|ABV14377.1| hypothetical protein CKO_03293 [Citrobacter koseri ATCC BAA-895] Length = 314 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 15/318 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL++ + LN P + +D TFG GG+SR ++A+DRDP Sbjct: 1 MMMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A++ Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAQAI---NDPRFSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 118 SFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG Sbjct: 178 MTRTKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F +S + + + ++P +E+VA Sbjct: 237 LSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGKLMPGEEEVA 296 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RS+ LR RT Sbjct: 297 ENPRARSSVLRIAERTNA 314 >gi|206580699|ref|YP_002240446.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342] gi|288937146|ref|YP_003441205.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22] gi|290512569|ref|ZP_06551935.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55] gi|263456192|sp|B5Y1V5|RSMH_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206569757|gb|ACI11533.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342] gi|288891855|gb|ADC60173.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22] gi|289774910|gb|EFD82912.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55] Length = 313 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FSQL DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIVHGPFSQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVI-AAAMPVKDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|227538294|ref|ZP_03968343.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Sphingobacterium spiritivorum ATCC 33300] gi|227241809|gb|EEI91824.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Sphingobacterium spiritivorum ATCC 33300] Length = 303 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 163/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + HVPV+L++ I L+ P V +D TFG GG+SR K + A D+DP A+ Sbjct: 2 SNVYHVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALE 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E+F+L F L++ K VDG++ DLGVSS Q D DRGFS + Sbjct: 62 NTIA-----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRF 116 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A V+N +DL RI G+ GE A +A +V R SAP +T Sbjct: 117 DADLDMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETV 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+K V K ++ H + FQALRI VN E+E L + L LK G L+V+ Sbjct: 177 AGLKEVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVM 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK F A K + + P FQ IT+K + ++E+++ N RSRS Sbjct: 235 SYHSLEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRS 292 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 293 AKLRVAEK 300 >gi|256003312|ref|ZP_05428303.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 2360] gi|281417697|ref|ZP_06248717.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20] gi|255992602|gb|EEU02693.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 2360] gi|281409099|gb|EFB39357.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20] gi|316940267|gb|ADU74301.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 1313] Length = 313 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 109/313 (34%), Positives = 164/313 (52%), Gaps = 11/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PVLLE+ I+ L P V +D T G G+S K +I LD+D FA+ Sbjct: 1 MEFQHKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIK 60 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127 QE + + L F +++ ++ ++ DLGVSS Q+D RGFS+ Sbjct: 61 TSQEKLAQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K PLDMRM G +A +VN+ +++ RI+ GEEK ASRIA IV+ R+ + Sbjct: 121 NKDAPLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIE 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + S + HPA R+FQALRI VNNE+ LA+ + + LK GG Sbjct: 181 TTGELVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRF 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + + + +K +VP ++++ N Sbjct: 241 CIITFHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENP 300 Query: 305 RSRSAKLRAGMRT 317 R+RSAKLR + Sbjct: 301 RARSAKLRVLEKI 313 >gi|332768872|gb|EGJ99051.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2930-71] Length = 312 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 2 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 118 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE A RIA AIV+R + P Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTR 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 238 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 297 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 298 RARSSVLRIAERTNA 312 >gi|239996439|ref|ZP_04716963.1| S-adenosyl-methyltransferase MraW [Alteromonas macleodii ATCC 27126] Length = 313 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 13/312 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 + H+ VLL++ I L P + +DATFG GG+S +IA DRDP A+ Sbjct: 4 PSEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQAI 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + FS+ + F + + + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 64 KAAERFADDKR--FSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSF 121 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA+D + A +D+T+++ GEEK RIAHAIV R+ P Sbjct: 122 LRDGPLDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPIT 181 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ +I + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L Sbjct: 182 RTAQLAKIIDEAV-PVKDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNR 304 V+SFHSLEDRLVK+F +S ++ + A + + K + P+++++A N Sbjct: 241 VISFHSLEDRLVKRFIKDQSKGKSVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNV 300 Query: 305 RSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 301 RSRSSVLRVAEK 312 >gi|302391523|ref|YP_003827343.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM 5501] gi|302203600|gb|ADL12278.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM 5501] Length = 311 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+PVLL + I LL+ + +D T G GG++ +I +D+D A+ + Sbjct: 4 EHIPVLLTETIELLDCKEDGIYVDCTVGGGGHAVEIADKLTTDGTLIGIDQDLAAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132 E++ + + + L + + + + G+D V +FDLG SS QID RGFS+Q P Sbjct: 64 ESLSNAECKVELVRDNYKNIDRVLNRFGIDSVDGLLFDLGFSSHQIDTAQRGFSYQYEAP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+D+VN + +LT I+ GEEK ASRIA IV+ RQ PF+ T +L Sbjct: 124 LDMRMDQRASRTAADLVNDLSQSELTDIIAEYGEEKWASRIAEFIVRYRQDKPFKLTTEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+ + + + HPA R+FQALRI VNNE+E L + L LK+GG + ++F Sbjct: 184 VETIKAAIPAGARRSGPHPAKRTFQALRIAVNNELEVLTKTLDKIVPLLKSGGRMAFITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + A + ITKK + Q+++ N R+RSA Sbjct: 244 HSLEDRIVKHKFKELAQDCICPPDFPVCACDEEAEVEIITKKPITAQQKEIDDNPRARSA 303 Query: 310 KLRAGMR 316 KLRA + Sbjct: 304 KLRAAEK 310 >gi|261367518|ref|ZP_05980401.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM 15176] gi|282570299|gb|EFB75834.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM 15176] Length = 307 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL+ + L P + LD T G G+S K +I+LD+DP AV+ E Sbjct: 5 HIPVLLQPCLDGLAIDPTGIYLDGTAGGAGHSMQIAKRLTTGRLISLDQDPDAVAVATER 64 Query: 78 MRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ Q + ++ + V+G + DLGVSS Q+D RGFS+ PLDMR Sbjct: 65 LKGLPAQVVQANFRDAARVLAELSIPAVNGALLDLGVSSHQLDDAARGFSYHADAPLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G +A+D+VN + ++LTRIL GEE A +IA IV R P TT L+ L+ Sbjct: 125 MSQQGPTAADLVNTLDREELTRILRDYGEEPYAWQIAGKIVATRAEQPITTTLQLADLVA 184 Query: 197 KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V ++ + +PA R+FQA+RI VN+E++ L +GL + L GG L V++FHSLED Sbjct: 185 SAVPPAERRKAKNPARRTFQAIRIAVNSELDVLNEGLDAIFNCLAPGGRLCVITFHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RLVK F + + I + + IT+K + E++ NRR+RSAKLR Sbjct: 245 RLVKNKFRRWAQRCTCPPEQPICTCGGVPKAKLITRKPIEADAEELEHNRRARSAKLRVL 304 Query: 315 MRT 317 + Sbjct: 305 EKV 307 >gi|284919862|emb|CBG32917.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli 042] Length = 312 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 2 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 118 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 238 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 297 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 298 RARSSVLRIAERTNA 312 >gi|160944903|ref|ZP_02092130.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii M21/2] gi|158444087|gb|EDP21091.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii M21/2] Length = 321 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 8/310 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDPF 69 +H+PVLL + + L P LD T G G+SR G +I+LD+DP Sbjct: 11 PASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPD 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV + + ++ Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 71 AVQTARSRLAGLPATVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYR 130 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++AP TT Sbjct: 131 ADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVEARETAPILTT 190 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V Sbjct: 191 LQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCV 250 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDRLVK F S A + IT+K + +++ NRRS Sbjct: 251 ITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRS 310 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 311 RSAHLRVLEK 320 >gi|145297477|ref|YP_001140318.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp. salmonicida A449] gi|263446607|sp|A4SI48|RSMH_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|142850249|gb|ABO88570.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp. salmonicida A449] Length = 312 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 14/312 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 +H+ VLL + + L P + +D TFG GG+SR + +IA+DRDP A++ Sbjct: 5 AEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIAEA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F + FS + Y+ ++ VDG + DLGVSS Q+D +RGFSF K Sbjct: 65 AKI---QDPRFEIVHGPFSGIVSYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G SA+ + +A+V D+ +L GEE+ A +IA AIV R + P+ T+ Sbjct: 122 GPLDMRMDPTSGQSAAQWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTR 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I + V SK H ATRSFQA+RI++N+E++E+ L A +AL G L V+S Sbjct: 182 QLAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQALAPEGRLSVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK F R + + A A + + K + P++ +V N RSR Sbjct: 241 FHSLEDRLVKHFIRKHEKGPEVPRGIPLTEAQLAGGRKLKSVGKALKPSEHEVTENSRSR 300 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 301 SSVLRVAQRLAE 312 >gi|329728859|gb|EGG65280.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21193] Length = 311 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ ++A+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLLAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|322513875|ref|ZP_08066954.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinobacillus ureae ATCC 25976] gi|322120274|gb|EFX92221.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinobacillus ureae ATCC 25976] Length = 313 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 167/315 (53%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTAHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSERGRLIATDRDPS 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + + +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---TDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + G LDMRM G+SA++ + Q +V DL +L GEE+ A RIA A+ +S Sbjct: 118 SFMRDGSLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVFSYNKSTT 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + ++ L K+ HPATRSFQA+RIF+N+E++EL + L+SA L G Sbjct: 178 DKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + S + + K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKTIGKAIMPSEAEIE 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANPRSRSAVLRIAEK 312 >gi|268319710|ref|YP_003293366.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785] gi|262398085|emb|CAX67099.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785] Length = 340 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 13/329 (3%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 M M+S+ H VLL + I LNP G + +DATFG GG++R + Sbjct: 11 MTISQKTWMTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNK 70 Query: 61 --VIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVF 109 VI D+D +A+S +E+ + + L F L++ G+DG+ + Sbjct: 71 GTVIGFDQDEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYY 130 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSS Q D +RGFS++ LDMRM S A +VN + K+L+ +L G+EK Sbjct: 131 DLGVSSPQFDQPERGFSYRFDARLDMRMDQSQELDAYTMVNTWSQKELSDVLYKYGDEKF 190 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227 + +IA IV RR+ P TT DL +I+ + + + HPA +SFQA+R+ VNNE+ Sbjct: 191 SRQIARKIVDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELVV 250 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 L + L A K LK GG + V++F S ED++VKK F S + + + Sbjct: 251 LQESLEEAIKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRL 310 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I++K ++ + +++ N RS SAKLR + Sbjct: 311 ISRKPIMASSDELEENNRSHSAKLRVAEK 339 >gi|117620544|ref|YP_858331.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|263446603|sp|A0KPY0|RSMH_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117561951|gb|ABK38899.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 312 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 174/312 (55%), Gaps = 14/312 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 +H+ VLL + + L P + +D TFG GG+SR + +IA+DRDP A++ Sbjct: 5 AEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIAEA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F + FS + Y+ ++ VDG + DLGVSS Q+D +RGFSF K Sbjct: 65 AKI---QDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G SA++ + +A+V D+ +L GEE+ A +IA AIV R + P+ T+ Sbjct: 122 GPLDMRMDPTSGQSAAEWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTR 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I + V SK H ATRSFQA+RI++N+E++E+ L A + L G L V+S Sbjct: 182 QLAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQVLAPEGRLSVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK F + + A A + + K + P++ +V N RSR Sbjct: 241 FHSLEDRLVKHFIRKHEKGPEVPHGIPLTEAQLAGGRKLKSVGKALKPSEHEVNENSRSR 300 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 301 SSVLRVAQRLAE 312 >gi|329667562|gb|AEB93510.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii DPC 6026] Length = 322 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 170/321 (52%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R + VI D+ Sbjct: 1 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60 Query: 67 DPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ G+DG+ +DLGVSS Q Sbjct: 61 DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S A +VN + K+L+ +L G+EK + +IA I Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + + + HPA +SFQA+R+ VNNE+ L + L A Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVKIPRGMPMVPADSKPTLRLISRKPIMA 300 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321 >gi|269838022|ref|YP_003320250.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM 20745] gi|269787285|gb|ACZ39428.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 128/305 (41%), Positives = 181/305 (59%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L + + LL PG +DATFG GG++R+ + V+ALD DP AV+ + Sbjct: 20 HQPVMLAESLNLLQVRPGGRYIDATFGGGGHTRAILEASSPDGRVLALDADPAAVARAEA 79 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F+Q+ VDGV+ DLG SS QID RGFSFQ+ GPL Sbjct: 80 LAEEVGPRLTVRHGNFAQIARLARAAGFDAVDGVLMDLGFSSFQIDEPSRGFSFQRPGPL 139 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR + G SA ++VN + DL+RI+ GEE +A RIA AIV R+ P +TT L+ Sbjct: 140 DMRFDPTTGSSAREIVNTWDEADLSRIIFEYGEEPKARRIARAIVAARRERPIETTDHLA 199 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++++ V + IHPATR+FQALRI VN E+E L QGL A L GG L+V++FHS Sbjct: 200 AIVEQAVGGRRGRAIHPATRTFQALRIAVNRELEVLEQGLAGALDVLAPGGRLVVIAFHS 259 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK++F + + + + H A + +T K + PT+ + A N RSRSA+L Sbjct: 260 LEDRIVKQYFRTEARDCICPPETPVCVCGHRARLRVVTPKPLRPTEAEQALNPRSRSARL 319 Query: 312 RAGMR 316 RA R Sbjct: 320 RAAER 324 >gi|323144058|ref|ZP_08078702.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066] gi|322416171|gb|EFY06861.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066] Length = 316 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 128/311 (41%), Positives = 173/311 (55%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +A LN P + +DATFG GG+SR K + ALDRD A+ + Sbjct: 5 HIPVLLNETLAGLNINPDGIYVDATFGRGGHSREILKRLNKNGRLYALDRDLSAIEAAKS 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E+FS+ A FSQL++ D V+G++ D+GVSS Q+D RGFSF K GP Sbjct: 65 IA---DERFSIVHARFSQLKEVCEDFGILGKVNGILMDIGVSSPQLDDASRGFSFDKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S I A+ +VN + KDL I GEE+ A ++A+AIV++R+ PF TT L Sbjct: 122 LDMRMDQSAKIDAALIVNTYDAKDLAYIFKTYGEERFAGKVANAIVRQREKTPFTTTLAL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI ++ K H ATR FQALRI VN+E+EEL L + L G L V+SFH Sbjct: 182 ADLISASI-PGKPGPKHKATRCFQALRIAVNSELEELKSALDGSIDVLDKDGRLCVISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS----ITK--KVVVPTQEDVAFNRR 305 SLEDR+VK F S R + ++ A + + K + T +++ N R Sbjct: 241 SLEDRIVKTFIRENSEGPKLPRGLPITDEELAELKLKSCTLQKISGAIKATDAEISQNPR 300 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 301 SRSAVLRVAAR 311 >gi|291525276|emb|CBK90863.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629] Length = 314 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 164/313 (52%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VL ++ I LN P + +D T G G+S K +I +D+D A+ Sbjct: 1 MEFKHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ- 128 E + ++ ++ ++ ++ +S +++ + + VDG++ DLGVSS Q+D RGF+++ Sbjct: 61 AAGERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRS 120 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM +A D+VN + DL RI+ GE+K A IA IV RQ T Sbjct: 121 EDAPLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITT 180 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ +I+ + + HP+ R++QA+RI +N+E++ L L L GG + Sbjct: 181 TGELNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDSLDDMIDLLNPGGRIC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK F + + IT+K ++P+++++ N R Sbjct: 241 IITFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSR 300 Query: 306 SRSAKLRAGMRTV 318 S+SAKLR + Sbjct: 301 SKSAKLRVFEKND 313 >gi|82775489|ref|YP_401836.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae Sd197] gi|309787242|ref|ZP_07681854.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617] gi|88909218|sp|Q32K10|RSMH_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|81239637|gb|ABB60347.1| putative apolipoprotein [Shigella dysenteriae Sd197] gi|308924820|gb|EFP70315.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617] Length = 313 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 175/314 (55%), Gaps = 15/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTCGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTV 318 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTN 312 >gi|148265993|ref|YP_001232699.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4] gi|146399493|gb|ABQ28126.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4] Length = 303 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 173/303 (57%), Gaps = 9/303 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 + +VI L P G + +D T G GG++R + +I DRD A++ E + Sbjct: 1 MAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAERLAP 60 Query: 81 YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y E+ L Q F+ L + + + +DG + D+GVSS Q+D RGFSFQ PLDMRM Sbjct: 61 YGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SG SASD+VN + DL RI+ GEE+ A RIA IVKRR+ +P +TT L +I+ Sbjct: 121 DVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLVDVIK 180 Query: 197 KTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V + R+HPATR+FQALRI VN+E+ L + L + + LK GG +V+SFHSLED Sbjct: 181 GAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F S + + + + + IT K V+ + +V+ N RSRSA+LRA Sbjct: 241 RIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSARLRAA 300 Query: 315 MRT 317 + Sbjct: 301 EKI 303 >gi|227889751|ref|ZP_04007556.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849615|gb|EEJ59701.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 322 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 170/321 (52%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R + VI D+ Sbjct: 1 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60 Query: 67 DPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ G+DG+ +DLGVSS Q Sbjct: 61 DEYAISMAKESFAKELQVGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S A +VN + K+L+ +L G+EK + +IA I Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + + + HPA +SFQA+R+ VNNE+ L + L A Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321 >gi|229013103|ref|ZP_04170268.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides DSM 2048] gi|229134728|ref|ZP_04263537.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST196] gi|228648774|gb|EEL04800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST196] gi|228748357|gb|EEL98217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides DSM 2048] Length = 302 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 9/300 (3%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 ++ + L+ P +D T G GG+S G +IA D+D A+ +E Y Sbjct: 2 KETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSYG 61 Query: 83 EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 EQF ++ F L + + + VDG++FDLGVSS Q+D +RGFS+ PLDMRM Sbjct: 62 EQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMDQ 121 Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 ++A DVVN + + L RI GEEK + +I I R++ +TT +L LI++ Sbjct: 122 DAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELVELIKEG 181 Query: 199 VYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + HPA R FQA+RI VN+E++ + L SA +K GG + V++FHSLEDR+ Sbjct: 182 IPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDRI 241 Query: 258 VKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K F S I + + IT+K ++P+ ++ N R+RSAKLR + Sbjct: 242 CKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAEK 301 >gi|24111527|ref|NP_706037.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301] gi|30061649|ref|NP_835820.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T] gi|42559469|sp|Q83SN7|RSMH_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24050285|gb|AAN41744.1| putative apolipoprotein [Shigella flexneri 2a str. 301] gi|30039891|gb|AAP15625.1| putative apolipoprotein [Shigella flexneri 2a str. 2457T] gi|281599444|gb|ADA72428.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Shigella flexneri 2002017] gi|313646535|gb|EFS10996.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T] gi|332762256|gb|EGJ92523.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2747-71] gi|332762643|gb|EGJ92908.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 4343-70] gi|332764928|gb|EGJ95156.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-671] gi|333009116|gb|EGK28572.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-218] gi|333022474|gb|EGK41712.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-304] Length = 313 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|261405657|ref|YP_003241898.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10] gi|261282120|gb|ACX64091.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10] Length = 317 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 170/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL ++ L P + +D T G G+S +IALD+D +A++ Sbjct: 1 MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E M+ Y ++ SL + F L++ VDG++FDLGVSS Q D G+RG Sbjct: 61 AREAMKPYADRISLVKTNFRDLEEVLRREVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR + Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P QTT +L +I++ + + + HPA RSFQA RI VN+E+ L A + L G Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ F S K + + +K ++P+ E++ Sbjct: 241 GRISVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 ESNPRARSAKLRIAEK 316 >gi|170768458|ref|ZP_02902911.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627] gi|170122562|gb|EDS91493.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627] Length = 313 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLSEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L V Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|330828037|ref|YP_004390989.1| ribosomal RNA small subunit methyltransferase H [Aeromonas veronii B565] gi|328803173|gb|AEB48372.1| Ribosomal RNA small subunit methyltransferase H [Aeromonas veronii B565] Length = 312 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 14/312 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 +H+ VLL + + L P V +D TFG GG+SR + +IA+DRDP A++ Sbjct: 5 AEHITVLLHEAVEGLAIKPDGVYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIAEA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F + FS + Y+ ++ VDG + DLGVSS Q+D +RGFSF K Sbjct: 65 AKI---QDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G SA++ + +A+V D+ +L GEE+ A +IA AIV R + P+ T+ Sbjct: 122 GPLDMRMDPTSGQSAAEWLAKADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTR 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I + V SK H ATRSFQA+RI++N+E++E+ L A + L G L V+S Sbjct: 182 QLAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALEVLAPHGRLSVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK F + + A A + + K + P+ +V+ N RSR Sbjct: 241 FHSLEDRLVKHFIRKHEKGPEVPYGIPLTEAQLAGGRKLKSVGKALKPSDHEVSENSRSR 300 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 301 SSVLRVAERLAE 312 >gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella thessalonicensis L13] Length = 314 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 131/304 (43%), Positives = 187/304 (61%), Gaps = 7/304 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H+PVLL+++ L G + +DATFG GGY+R+ + VIA+DRDP A+ ++ Sbjct: 1 MHIPVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y ++ +FQ FS L V V+ VVFD GVSS QID +RGFSF+ GPLD Sbjct: 61 KAQYPDRLFVFQGVFSDLPSIVEKVPVEKVDGVVFDFGVSSYQIDTPERGFSFRFEGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D+VN + +DL ++ GEE ++ RIA AIV+ R+ P QTT +L++L Sbjct: 121 MRMSGEGESAADIVNTYSEEDLANVIYTYGEEYRSRRIARAIVELRKVKPIQTTLELANL 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + + HPAT +FQALRI VNNE+ E+ +GL+ AE L G L+ V+FHSLE Sbjct: 181 IKSRV-GGRPDAQHPATLTFQALRIKVNNELIEIERGLKFAEDFLSTDGRLVAVTFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F +S + ++P P F + K + P++ +++ N RSRSA+LR Sbjct: 240 DRVVKSFLRQKSVRKQKQSRLLPGEKVPSPPSFHDLYPKGIAPSETEISANPRSRSARLR 299 Query: 313 AGMR 316 A +R Sbjct: 300 AAVR 303 >gi|332799086|ref|YP_004460585.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter sp. Re1] gi|332696821|gb|AEE91278.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter sp. Re1] Length = 320 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 171/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVP+LL K I +L+P PG V +DAT G GG+ R K I +D+D A+S +E Sbjct: 5 HVPILLHKTIEMLDPKPGGVYVDATLGGGGHFRELLKKAEYEGTFIGIDQDEVAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L F L+ + + +DG++FDLGVSS Q D G RGFS+ K PL Sbjct: 65 NFSKFSYDIRLIHDNFYNLKKIIKENKLSEIDGILFDLGVSSYQFDEGSRGFSYNKDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN+ + +L +I+ GEE A RIA I + R TT +L Sbjct: 125 DMRMDQRKTLSAKDVVNKMSRDELKQIISEYGEESWAGRIADFICEARSRKEITTTGELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQALRI+VN E+E L ++ A + LK GG + V++FH Sbjct: 185 EIIKNAIPARARRKGGHPARKTFQALRIYVNEELEILDSSIKDAVELLKPGGRICVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + +I + H V + +T K + P+QE++ N R+RSAK Sbjct: 245 SLEDRIVKNAFKLLATACICPKEALICTCNHTKVLKVLTSKPIYPSQEEIESNPRARSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRVAQK 310 >gi|331701055|ref|YP_004398014.1| ribosomal RNA small subunit methyltransferase H [Lactobacillus buchneri NRRL B-30929] gi|329128398|gb|AEB72951.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus buchneri NRRL B-30929] Length = 315 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 161/314 (51%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 + HV VLL + + LN P +DAT G GG++ + ++ + D+D A++ Sbjct: 2 SEFKHVTVLLNEAVKGLNINPDGTYVDATLGGGGHTTKILEQLTNGHLYSFDQDEEAIAY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + +Y + +L F L+ + + +DG+V+DLGVSS Q D RGFS++ Sbjct: 62 NRQHLAEYIEAGKLTLIHDNFRHLKSALQNVDVSGIDGIVYDLGVSSPQFDEAGRGFSYR 121 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM A +VN+ + L RI GEEK A IA I R+ P T Sbjct: 122 FDARLDMRMDQDNPIDAWKIVNEWPYEKLVRIFYRYGEEKFAKSIARRIETVRREHPIDT 181 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I++ + + + + HPA + FQA+RI VN+E+ L L A L G + Sbjct: 182 TNDLVEVIKEGIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQALDLLNVNGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLEDRLVK F + S + I F+SIT+K +VPT+ ++ N R Sbjct: 242 VITFQSLEDRLVKTMFKEKTSLPELPPNLPIIPEGIKPKFKSITRKPIVPTEAELEENHR 301 Query: 306 SRSAKLRAGMRTVE 319 S SAKLR R Sbjct: 302 SHSAKLRIIERIKN 315 >gi|160935714|ref|ZP_02083089.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC BAA-613] gi|158441458|gb|EDP19168.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC BAA-613] Length = 315 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 173/312 (55%), Gaps = 8/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + + H VLL + + LN PG + +D T G GG++ CK +I +D+D A Sbjct: 1 MEESTFVHKSVLLYETVGSLNIKPGGLYVDGTLGGGGHAYEVCKRLGSGKLIGIDQDADA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + ++++ ++ ++ ++ +++ + + +GVDG+ DLGVSS Q+D RGF++ Sbjct: 61 IEAAGKRLLPFQDKVTIVRSNYANIKEVLKELEIEGVDGIYLDLGVSSYQLDTASRGFTY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM +A+ ++N + +L RI+ GE+ A IA IV+ R P + Sbjct: 121 REDAPLDMRMDQRNDVTAAHIINTYSEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +I+ + + HPA R+FQA+RI N+E+E L Q + + L GG L Sbjct: 181 TTGELAEIIKGAIPARVRATGGHPAKRTFQAIRIECNHELEVLEQSIDTMIDLLNPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + +++K ++P++E++ N Sbjct: 241 SIITFHSLEDRIVKSRFRLNENPCICPHDFPVCVCGRKSKGKVVSRKPILPSEEELEENS 300 Query: 305 RSRSAKLRAGMR 316 RS+SAKLR R Sbjct: 301 RSKSAKLRVFER 312 >gi|15799766|ref|NP_285778.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933] gi|15829340|ref|NP_308113.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. Sakai] gi|16128075|ref|NP_414624.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|82542686|ref|YP_406633.1| S-adenosyl-methyltransferase MraW [Shigella boydii Sb227] gi|89106965|ref|AP_000745.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. W3110] gi|91209146|ref|YP_539132.1| S-adenosyl-methyltransferase MraW [Escherichia coli UTI89] gi|110640295|ref|YP_668023.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536] gi|157154775|ref|YP_001461252.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A] gi|157159553|ref|YP_001456871.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS] gi|168751408|ref|ZP_02776430.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113] gi|168755690|ref|ZP_02780697.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401] gi|168764039|ref|ZP_02789046.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501] gi|168771306|ref|ZP_02796313.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486] gi|168776926|ref|ZP_02801933.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196] gi|168781967|ref|ZP_02806974.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076] gi|168789609|ref|ZP_02814616.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869] gi|168801509|ref|ZP_02826516.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508] gi|170021562|ref|YP_001726516.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739] gi|170079721|ref|YP_001729041.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. DH10B] gi|170679711|ref|YP_001742204.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5] gi|187731396|ref|YP_001878892.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94] gi|188494231|ref|ZP_03001501.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638] gi|191167757|ref|ZP_03029564.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A] gi|191174644|ref|ZP_03036126.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11] gi|193065897|ref|ZP_03046958.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22] gi|193070829|ref|ZP_03051762.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019] gi|194429383|ref|ZP_03061908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171] gi|194439418|ref|ZP_03071495.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1] gi|195939298|ref|ZP_03084680.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4024] gi|208807673|ref|ZP_03250010.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4206] gi|208812612|ref|ZP_03253941.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4045] gi|208821818|ref|ZP_03262138.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4042] gi|209400403|ref|YP_002268690.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4115] gi|209917275|ref|YP_002291359.1| S-adenosyl-methyltransferase MraW [Escherichia coli SE11] gi|217324681|ref|ZP_03440765.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14588] gi|218547539|ref|YP_002381330.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ATCC 35469] gi|218552665|ref|YP_002385578.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI1] gi|218557022|ref|YP_002389935.1| S-adenosyl-methyltransferase MraW [Escherichia coli S88] gi|218693551|ref|YP_002401218.1| S-adenosyl-methyltransferase MraW [Escherichia coli 55989] gi|218703342|ref|YP_002410861.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMN026] gi|237704231|ref|ZP_04534712.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA] gi|238899483|ref|YP_002925279.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli BW2952] gi|253774888|ref|YP_003037719.1| S-adenosyl-methyltransferase MraW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037497|ref|ZP_04871574.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43] gi|254160204|ref|YP_003043312.1| S-adenosyl-methyltransferase MraW [Escherichia coli B str. REL606] gi|254791219|ref|YP_003076056.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14359] gi|256020080|ref|ZP_05433945.1| S-adenosyl-methyltransferase MraW [Shigella sp. D9] gi|256025396|ref|ZP_05439261.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 4_1_40B] gi|260842318|ref|YP_003220096.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260853295|ref|YP_003227186.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260866235|ref|YP_003232637.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|261226839|ref|ZP_05941120.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. FRIK2000] gi|261255243|ref|ZP_05947776.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. FRIK966] gi|291280907|ref|YP_003497725.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli O55:H7 str. CB9615] gi|293403154|ref|ZP_06647251.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1412] gi|293408175|ref|ZP_06652015.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354] gi|293417958|ref|ZP_06660580.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185] gi|293476742|ref|ZP_06665150.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088] gi|297516902|ref|ZP_06935288.1| S-adenosyl-methyltransferase MraW [Escherichia coli OP50] gi|298378684|ref|ZP_06988568.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1302] gi|300816120|ref|ZP_07096343.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1] gi|300821913|ref|ZP_07102057.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7] gi|300900887|ref|ZP_07119024.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1] gi|300905491|ref|ZP_07123255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1] gi|300919637|ref|ZP_07136128.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1] gi|300923135|ref|ZP_07139195.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1] gi|300931791|ref|ZP_07147091.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1] gi|300938477|ref|ZP_07153217.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1] gi|300949900|ref|ZP_07163863.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1] gi|300955948|ref|ZP_07168281.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1] gi|300984504|ref|ZP_07176996.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1] gi|301028563|ref|ZP_07191794.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1] gi|301303818|ref|ZP_07209938.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1] gi|301330140|ref|ZP_07222807.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1] gi|301646394|ref|ZP_07246276.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1] gi|306815320|ref|ZP_07449469.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101] gi|307136683|ref|ZP_07496039.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|307311467|ref|ZP_07591109.1| S-adenosyl-methyltransferase MraW [Escherichia coli W] gi|309796072|ref|ZP_07690484.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7] gi|312970176|ref|ZP_07784358.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70] gi|331661128|ref|ZP_08362060.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206] gi|331661456|ref|ZP_08362380.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143] gi|331666319|ref|ZP_08367200.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271] gi|331681467|ref|ZP_08382104.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299] gi|332281230|ref|ZP_08393643.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Shigella sp. D9] gi|42559423|sp|P60391|RSMH_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560200|sp|P60390|RSMH_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909217|sp|Q326F3|RSMH_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122425027|sp|Q1RGB3|RSMH_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122958600|sp|Q0TLQ7|RSMH_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826583|sp|B2U287|RSMH_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446391|sp|A7ZHH3|RSMH_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446421|sp|B7LFV2|RSMH_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446425|sp|B5YZB8|RSMH_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446445|sp|B7M125|RSMH_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446449|sp|C5W331|RSMH_ECOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446457|sp|C6UM45|RSMH_ECOBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446461|sp|C4ZQ04|RSMH_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446465|sp|B1XC59|RSMH_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446468|sp|A7ZW34|RSMH_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446964|sp|B1IR96|RSMH_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446972|sp|B7N7V5|RSMH_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446978|sp|B6HZ59|RSMH_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446983|sp|B1LG19|RSMH_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447462|sp|B7MAK5|RSMH_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447500|sp|B7LWH0|RSMH_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447897|sp|A1A7C7|RSMH_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12512785|gb|AAG54386.1|AE005185_3 putative apolipoprotein [Escherichia coli O157:H7 str. EDL933] gi|40850|emb|CAA38859.1| unnamed protein product [Escherichia coli] gi|42318|emb|CAA36283.1| unnamed protein product [Escherichia coli str. K-12 substr. W3110] gi|1786270|gb|AAC73193.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|13359542|dbj|BAB33509.1| putative apolipoprotein [Escherichia coli O157:H7 str. Sakai] gi|21321963|dbj|BAB96650.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K12 substr. W3110] gi|81244097|gb|ABB64805.1| putative apolipoprotein [Shigella boydii Sb227] gi|91070720|gb|ABE05601.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli UTI89] gi|110341887|gb|ABG68124.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536] gi|157065233|gb|ABV04488.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS] gi|157076805|gb|ABV16513.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A] gi|169756490|gb|ACA79189.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739] gi|169887556|gb|ACB01263.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. DH10B] gi|170517429|gb|ACB15607.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5] gi|187428388|gb|ACD07662.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94] gi|187767771|gb|EDU31615.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196] gi|188014531|gb|EDU52653.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113] gi|188489430|gb|EDU64533.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638] gi|189000502|gb|EDU69488.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076] gi|189356993|gb|EDU75412.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401] gi|189359899|gb|EDU78318.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486] gi|189365898|gb|EDU84314.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501] gi|189370778|gb|EDU89194.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869] gi|189376342|gb|EDU94758.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508] gi|190902183|gb|EDV61925.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A] gi|190905079|gb|EDV64736.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11] gi|192926484|gb|EDV81117.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22] gi|192955859|gb|EDV86329.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019] gi|194412603|gb|EDX28900.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171] gi|194421677|gb|EDX37687.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1] gi|208727474|gb|EDZ77075.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4206] gi|208733889|gb|EDZ82576.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4045] gi|208741941|gb|EDZ89623.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4042] gi|209161803|gb|ACI39236.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4115] gi|209746626|gb|ACI71620.1| putative apolipoprotein [Escherichia coli] gi|209746628|gb|ACI71621.1| putative apolipoprotein [Escherichia coli] gi|209746630|gb|ACI71622.1| putative apolipoprotein [Escherichia coli] gi|209746632|gb|ACI71623.1| putative apolipoprotein [Escherichia coli] gi|209910534|dbj|BAG75608.1| S-adenosyl-methyltransferase [Escherichia coli SE11] gi|217320902|gb|EEC29326.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14588] gi|218350283|emb|CAU95966.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli 55989] gi|218355080|emb|CAQ87687.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia fergusonii ATCC 35469] gi|218359433|emb|CAQ96971.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli IAI1] gi|218363791|emb|CAR01451.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli S88] gi|218430439|emb|CAR11305.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli UMN026] gi|226840603|gb|EEH72605.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43] gi|226902143|gb|EEH88402.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA] gi|238863507|gb|ACR65505.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli BW2952] gi|242375918|emb|CAQ30599.1| 16S rRNA m[4]C1402 methyltransferase [Escherichia coli BL21(DE3)] gi|253325932|gb|ACT30534.1| S-adenosyl-methyltransferase MraW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972105|gb|ACT37776.1| S-adenosyl-methyltransferase [Escherichia coli B str. REL606] gi|253976314|gb|ACT41984.1| S-adenosyl-methyltransferase [Escherichia coli BL21(DE3)] gi|254590619|gb|ACT69980.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli O157:H7 str. TW14359] gi|257751944|dbj|BAI23446.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257757465|dbj|BAI28962.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257762591|dbj|BAI34086.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|260450711|gb|ACX41133.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1] gi|281177302|dbj|BAI53632.1| S-adenosyl-methyltransferase [Escherichia coli SE15] gi|290760780|gb|ADD54741.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli O55:H7 str. CB9615] gi|291321195|gb|EFE60637.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088] gi|291430069|gb|EFF03083.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1412] gi|291430676|gb|EFF03674.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185] gi|291472426|gb|EFF14908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354] gi|294492092|gb|ADE90848.1| S-adenosyl-methyltransferase MraW [Escherichia coli IHE3034] gi|298281018|gb|EFI22519.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1302] gi|299878407|gb|EFI86618.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1] gi|300306673|gb|EFJ61193.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1] gi|300317168|gb|EFJ66952.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1] gi|300355651|gb|EFJ71521.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1] gi|300402641|gb|EFJ86179.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1] gi|300413277|gb|EFJ96587.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1] gi|300420590|gb|EFK03901.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1] gi|300450732|gb|EFK14352.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1] gi|300456546|gb|EFK20039.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1] gi|300460451|gb|EFK23944.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1] gi|300525513|gb|EFK46582.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7] gi|300531327|gb|EFK52389.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1] gi|300840945|gb|EFK68705.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1] gi|300843845|gb|EFK71605.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1] gi|301075364|gb|EFK90170.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1] gi|305850982|gb|EFM51437.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101] gi|306908446|gb|EFN38944.1| S-adenosyl-methyltransferase MraW [Escherichia coli W] gi|307629656|gb|ADN73960.1| S-adenosyl-methyltransferase MraW [Escherichia coli UM146] gi|308120314|gb|EFO57576.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7] gi|309700293|emb|CBI99581.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli ETEC H10407] gi|310337674|gb|EFQ02785.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70] gi|315059305|gb|ADT73632.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli W] gi|315134776|dbj|BAJ41935.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1] gi|315253156|gb|EFU33124.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 85-1] gi|315285172|gb|EFU44617.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 110-3] gi|315300017|gb|EFU59255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 16-3] gi|315616139|gb|EFU96758.1| S-adenosyl-methyltransferase MraW [Escherichia coli 3431] gi|320172827|gb|EFW48059.1| rRNA small subunit methyltransferase H [Shigella dysenteriae CDC 74-1112] gi|320183631|gb|EFW58474.1| rRNA small subunit methyltransferase H [Shigella flexneri CDC 796-83] gi|320190395|gb|EFW65045.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. EC1212] gi|320197467|gb|EFW72081.1| rRNA small subunit methyltransferase H [Escherichia coli WV_060327] gi|320200399|gb|EFW74985.1| rRNA small subunit methyltransferase H [Escherichia coli EC4100B] gi|320642121|gb|EFX11472.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str. G5101] gi|320658207|gb|EFX25936.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663516|gb|EFX30800.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str. USDA 5905] gi|320668828|gb|EFX35623.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str. LSU-61] gi|323157851|gb|EFZ43954.1| S-adenosyl-methyltransferase MraW [Escherichia coli EPECa14] gi|323160120|gb|EFZ46081.1| S-adenosyl-methyltransferase MraW [Escherichia coli E128010] gi|323176390|gb|EFZ61982.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1180] gi|323181779|gb|EFZ67192.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1357] gi|323190236|gb|EFZ75512.1| S-adenosyl-methyltransferase MraW [Escherichia coli RN587/1] gi|323380137|gb|ADX52405.1| S-adenosyl-methyltransferase MraW [Escherichia coli KO11] gi|323935134|gb|EGB31501.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1520] gi|323939878|gb|EGB36078.1| S-adenosyl-methyltransferase MraW [Escherichia coli E482] gi|323945711|gb|EGB41759.1| S-adenosyl-methyltransferase MraW [Escherichia coli H120] gi|323950922|gb|EGB46799.1| S-adenosyl-methyltransferase MraW [Escherichia coli H252] gi|323955280|gb|EGB51053.1| S-adenosyl-methyltransferase MraW [Escherichia coli H263] gi|323960028|gb|EGB55674.1| S-adenosyl-methyltransferase MraW [Escherichia coli H489] gi|323964822|gb|EGB60289.1| S-adenosyl-methyltransferase MraW [Escherichia coli M863] gi|323970754|gb|EGB66008.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA007] gi|323975754|gb|EGB70850.1| S-adenosyl-methyltransferase MraW [Escherichia coli TW10509] gi|324012284|gb|EGB81503.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 60-1] gi|324017757|gb|EGB86976.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 117-3] gi|324112505|gb|EGC06482.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii B253] gi|324118432|gb|EGC12326.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1167] gi|325496018|gb|EGC93877.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ECD227] gi|326345198|gb|EGD68941.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. 1125] gi|326346948|gb|EGD70682.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. 1044] gi|327255060|gb|EGE66663.1| S-adenosyl-methyltransferase MraW [Escherichia coli STEC_7v] gi|330909929|gb|EGH38439.1| rRNA small subunit methyltransferase H [Escherichia coli AA86] gi|331052170|gb|EGI24209.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206] gi|331061371|gb|EGI33334.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143] gi|331066530|gb|EGI38407.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271] gi|331081688|gb|EGI52849.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299] gi|332095373|gb|EGJ00396.1| S-adenosyl-methyltransferase MraW [Shigella boydii 5216-82] gi|332098926|gb|EGJ03877.1| S-adenosyl-methyltransferase MraW [Shigella boydii 3594-74] gi|332103582|gb|EGJ06928.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Shigella sp. D9] gi|332341414|gb|AEE54748.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMNK88] gi|333010578|gb|EGK30011.1| S-adenosyl-methyltransferase MraW [Shigella flexneri VA-6] gi|333011470|gb|EGK30884.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-272] gi|333021712|gb|EGK40961.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-227] Length = 313 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|218687959|ref|YP_002396171.1| S-adenosyl-methyltransferase MraW [Escherichia coli ED1a] gi|263446439|sp|B7MNU1|RSMH_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218425523|emb|CAR06306.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli ED1a] Length = 313 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGTYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|300768848|ref|ZP_07078742.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493581|gb|EFK28755.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 319 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 162/312 (51%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + G ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLGGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y + Q + ++ F+ L+ + + VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S +A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F S + ++ +++K VVP+ ++ NR Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301 Query: 305 RSRSAKLRAGMR 316 R+RSAKLRA R Sbjct: 302 RARSAKLRAIER 313 >gi|157692188|ref|YP_001486650.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus SAFR-032] gi|263446003|sp|A8FCX3|RSMH_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157680946|gb|ABV62090.1| S-adenosyl-methyltransferase [Bacillus pumilus SAFR-032] Length = 310 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 161/309 (52%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + LN +D T G G+S +I D+D A+ Sbjct: 1 MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + K ++ F L++ + ++ VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AREKLAGSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S SA VVN+ +DL RI GEEK + +IA I + R+ AP +TT Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E++ + L A + L G + V+ Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + IT+K +V +++++ N R+R Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|157826956|ref|YP_001496020.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389] gi|167011836|sp|A8GVV6|RSMH_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157802260|gb|ABV78983.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389] Length = 305 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 125/306 (40%), Positives = 181/306 (59%), Gaps = 5/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74 H+PV+L +++ L P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MQQPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E +YK++F + F + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + +N A KDL ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + + +I PAT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VHSCI-GFRKGKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A + + IT K +P+ ++++ N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKL 299 Query: 312 RAGMRT 317 RA + Sbjct: 300 RAAKKI 305 >gi|117622368|ref|YP_851281.1| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1] gi|331640535|ref|ZP_08341683.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|331645192|ref|ZP_08346303.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605] gi|331650979|ref|ZP_08352007.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718] gi|331671601|ref|ZP_08372399.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280] gi|331680655|ref|ZP_08381314.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591] gi|115511492|gb|ABI99566.1| S-adenosyl-methyltransferase [Escherichia coli APEC O1] gi|331040281|gb|EGI12488.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|331045949|gb|EGI18068.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605] gi|331051433|gb|EGI23482.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718] gi|331071446|gb|EGI42803.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280] gi|331072118|gb|EGI43454.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591] Length = 346 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 36 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 95 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 96 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 152 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 153 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 212 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 213 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 271 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 272 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 331 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 332 RARSSVLRIAERTNA 346 >gi|209746624|gb|ACI71619.1| putative apolipoprotein [Escherichia coli] gi|320647484|gb|EFX16279.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str. 493-89] gi|320652818|gb|EFX21056.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str. H 2687] Length = 313 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNRKQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str. Houston-1] gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1] Length = 346 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 161/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G+ VIALDRDP A+ GQ + Sbjct: 25 HIPVLLQPVLAGLIPLVGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAIREGQSLVD 84 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 85 EFFPRLRLVQGNFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN+ +L RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 144 TGFTAADVVNRLKSDELARIFKILGEERYARRIARMIEKRRCVQPFLRTGDLAHAIEVLV 203 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK Sbjct: 204 GRKSGERIHPATRVFQALRIYVNDEIGELARGLFAAERVLKPGGRLGVVSFHSLEDRMVK 263 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF++RSG+ + R++ PA F + K + +E++ N RSRSA+LR G+RT Sbjct: 264 RFFSARSGESVRSRYLPEIEMAPATFFPLFKGGITANKEELERNPRSRSARLRIGVRTEA 323 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + D + L L ++ F G Sbjct: 324 ECLFAD--MKLFGLAKIASFEG 343 >gi|238924611|ref|YP_002938127.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656] gi|263433305|sp|C4ZD30|RSMH2_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|238876286|gb|ACR75993.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656] Length = 314 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 164/313 (52%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VL ++ I LN P + +D T G G+S K +I +D+D A+ Sbjct: 1 MEFKHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ- 128 E + ++ ++ ++ ++ +S +++ + + VDG++ DLGVSS Q+D RGF+++ Sbjct: 61 AAGERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRS 120 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM +A D+VN + DL RI+ GE+K A IA IV RQ T Sbjct: 121 EDAPLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITT 180 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ +I+ + + HP+ R++QA+RI +N+E++ L L L GG + Sbjct: 181 TGELNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRIC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK F + + IT+K ++P+++++ N R Sbjct: 241 IITFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSR 300 Query: 306 SRSAKLRAGMRTV 318 S+SAKLR + Sbjct: 301 SKSAKLRVFEKND 313 >gi|42518892|ref|NP_964822.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533] gi|41583178|gb|AAS08788.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533] Length = 322 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 170/321 (52%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R + VI D+ Sbjct: 1 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60 Query: 67 DPFAVSCGQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ G+DG+ +DLGVSS Q Sbjct: 61 DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S A +VN + K+L+ +L G+EK + +IA I Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + + + HPA +SFQA+R+ VN+E+ L + L A Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321 >gi|332686267|ref|YP_004456041.1| rRNA small subunit methyltransferase H [Melissococcus plutonius ATCC 35311] gi|332370276|dbj|BAK21232.1| rRNA small subunit methyltransferase H [Melissococcus plutonius ATCC 35311] Length = 316 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 168/313 (53%), Gaps = 11/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL++ I LN P + +D T G GG+S+ ++ D+D A++ Sbjct: 3 ETFNHQTVLLKETINELNINPNGIYVDCTLGGGGHSQYLLSKLSEKGHLYVFDQDEMALT 62 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 + + Y K+ + +A F L++ + +K V DG+ +DLGVSS Q+D +RGFS+ Sbjct: 63 AASKRLAPYVEKQMVTFIKANFRLLKEKLFEKHVFQVDGIFYDLGVSSPQLDEAERGFSY 122 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM + +A ++VN + ++L ++ EEK + +IA I + R + Q Sbjct: 123 HHDAPLDMRMDQTSSLTAYEIVNHYSYENLVKVFFRYSEEKFSKQIAREIERVRLNQTIQ 182 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+K + + HPA R FQA+RI VN+E+ + L A + L G + Sbjct: 183 TTGELVEIIKKVIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEVSLEQAIELLNKNGRI 242 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK F S S + + + + ITKK ++P++E+ N Sbjct: 243 GVITFHSLEDRIVKNMFKSYSTPKDLPPGLPVVPEEYQPILKVITKKPIIPSEEEQKQNN 302 Query: 305 RSRSAKLRAGMRT 317 RSRSAKLR + Sbjct: 303 RSRSAKLRIAEKI 315 >gi|91791714|ref|YP_561365.1| S-adenosyl-methyltransferase MraW [Shewanella denitrificans OS217] gi|123061331|sp|Q12SD4|RSMH_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91713716|gb|ABE53642.1| methyltransferase [Shewanella denitrificans OS217] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 171/314 (54%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLKETVDGLNIQPDGIYIDGTFGRGGHSRHVLSHLGPNGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV + +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLADYVAELGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK + IA I R+ P Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGAVNVLAPHGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 + ++SFHSLEDR+VK+F S + + A + + K + P++ +V Sbjct: 237 MSIISFHSLEDRMVKRFMRRHSQGESVPHGLPITEAEINKSKKLKTLGKAMKPSEIEVEQ 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRVAER 310 >gi|121535927|ref|ZP_01667723.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans Nor1] gi|121305498|gb|EAX46444.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans Nor1] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 169/306 (55%), Gaps = 8/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ +A L P + +D T G GG+S +I +D+DP A++ GQ Sbjct: 8 HKTVLLEESVAALVTNPAGIYVDCTLGGGGHSALIASRLSPEGWLIGIDQDPAAIAAGQA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L + FS L + + VDGV+FDLGVSS Q+D RGFS+ + PL Sbjct: 68 RLAGASCRIDLVRDNFSNLSRILTTLGIESVDGVLFDLGVSSHQLDVAQRGFSYMQDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ISA DVVN + DLTRI+ GEE+ A RIA IV+ R +AP TT L+ Sbjct: 128 DMRMDPSAPISAYDVVNTYSEDDLTRIIRDYGEERWARRIAQFIVQARMTAPICTTGQLT 187 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + + + HPA R+FQA+RI VNNE+ L +A + LK GG + +++FH Sbjct: 188 DIIKRAIPAAARRDGPHPAKRTFQAIRIEVNNELSILQDAFITAVQFLKCGGRICIITFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+ K S + + + H I K + PT E++ N R+RSAKL Sbjct: 248 SLEDRIAKHTLQSLAKGCVCPPQLPICVCHNKPKLKILGKPITPTAEELDDNHRARSAKL 307 Query: 312 RAGMRT 317 R + Sbjct: 308 RVAEKV 313 >gi|215485248|ref|YP_002327679.1| S-adenosyl-methyltransferase MraW [Escherichia coli O127:H6 str. E2348/69] gi|312966210|ref|ZP_07780436.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75] gi|263447451|sp|B7UID2|RSMH_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|215263320|emb|CAS07635.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli O127:H6 str. E2348/69] gi|312289453|gb|EFR17347.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLASGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|291616264|ref|YP_003519006.1| MraW [Pantoea ananatis LMG 20103] gi|291151294|gb|ADD75878.1| MraW [Pantoea ananatis LMG 20103] gi|327392716|dbj|BAK10138.1| S-adenosyl-methyltransferase MraW [Pantoea ananatis AJ13355] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 173/318 (54%), Gaps = 19/318 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 QENYKHTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSRLILAQLGASGKLIAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEIK---DPRFSIVHGPFSALADYVAERELVGRIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + QA D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGHSAAEWLKQAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L Sbjct: 179 RTKELAEVI-AAATPIKDKFKHPATRSFQAIRIWINSELEEIDTALKGAVEVLAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F +S R + + + K +VP +V Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPRGLPMTEQQLNALGGRQLTLLGK--MVPGDAEVK 295 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RS+ LR RT Sbjct: 296 ENPRARSSVLRIAERTDA 313 >gi|319939729|ref|ZP_08014086.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus anginosus 1_2_62CV] gi|319811067|gb|EFW07378.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus anginosus 1_2_62CV] Length = 316 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGKNGHLYAFDQDQTAIEHAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVNQ + DL RI GE+K + +IA I + R+ +TT + Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKLIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +T+K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPENLQPKMKLVTRKPILPSKEELDNNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAQKV 314 >gi|194434429|ref|ZP_03066691.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012] gi|194417345|gb|EDX33452.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012] gi|332098043|gb|EGJ03016.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 155-74] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATSVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPVGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|295104209|emb|CBL01753.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii SL3/3] Length = 321 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 8/310 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDPF 69 +H+PVLL + + L P LD T G G+SR G +I+LD+DP Sbjct: 11 PASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPD 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV + + ++ Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 71 AVQTARSRLAGLPATVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYR 130 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++AP TT Sbjct: 131 ADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVETRETAPILTT 190 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V Sbjct: 191 LQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCV 250 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDRLVK F S A + IT+K + +++ NRRS Sbjct: 251 ITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRS 310 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 311 RSAHLRVLEK 320 >gi|157151600|ref|YP_001449889.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str. Challis substr. CH1] gi|262826721|sp|A8AVS9|RSMH_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157076394|gb|ABV11077.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str. Challis substr. CH1] Length = 316 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + Q F L+ + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIEKGMVTFVQDNFRHLKLQLEKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA VVN + DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + I++K ++P+ E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAEELELNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKV 314 >gi|125973496|ref|YP_001037406.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC 27405] gi|263446119|sp|A3DE34|RSMH_CLOTH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125713721|gb|ABN52213.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC 27405] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 166/313 (53%), Gaps = 11/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PVLLE+ I+ L P V +D T G G+S K +I LD+D FA+ Sbjct: 1 MEFQHKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIK 60 Query: 73 CGQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127 QE + + K + L F +++ ++ ++ DLGVSS Q+D RGFS+ Sbjct: 61 TSQEKLVQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K PLDMRM G +A +VN+ +++ RI+ GEEK ASRIA IV+ R+ + Sbjct: 121 NKDAPLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIE 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + S + HPA R+FQALRI VNNE+ LA+ + + LK GG Sbjct: 181 TTGELVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRF 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + + + +K +VP ++++ N Sbjct: 241 CIITFHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENP 300 Query: 305 RSRSAKLRAGMRT 317 R+RSAKLR + Sbjct: 301 RARSAKLRVLEKI 313 >gi|315222117|ref|ZP_07864026.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211] gi|315188743|gb|EFU22449.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211] Length = 316 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S + A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGENGRLYAFDQDQTAIEHAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVNQ + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +T+K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLQPKMKLVTRKPILPSKEELDNNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAQKV 314 >gi|297616973|ref|YP_003702132.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM 12680] gi|297144810|gb|ADI01567.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM 12680] Length = 307 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPVLLE+ +++L P V +D T G GG+ + +I +D+D A+ + Sbjct: 1 MHVPVLLEEAVSMLALQPDGVYVDCTVGGGGHLACLVQKLGEKATIIGIDKDAKALEEAR 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + L F +LQ + + G+V DLGVSS Q+D RGFS+Q+ GP Sbjct: 61 KKLANVSSKLILIHGDFRRLQVILKMHGISEIHGIVLDLGVSSFQLDDASRGFSYQEEGP 120 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VN+ + + L I+ LGEE+ A RIA IV+ RQ P TT +L Sbjct: 121 LDMRMNTDQQLSAWHLVNEWSEERLALIIRELGEERYARRIAREIVRERQQRPINTTFEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ V HPA R+FQALRI VN E+E L + L A + L + G + V++FH Sbjct: 181 VEVIKRAVPAQAKKDKHPARRTFQALRIAVNEELEALEEVLPQAVEVLASEGRIAVITFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK FF S + + + H A + +TK+ + PT+ ++A N RSRSAK Sbjct: 241 SLEDRIVKTFFKRESLGCLCPSDQPVCTCNHRARLKIVTKRPITPTEAELARNPRSRSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRIAEKI 307 >gi|74310701|ref|YP_309120.1| S-adenosyl-methyltransferase MraW [Shigella sonnei Ss046] gi|88909219|sp|Q3Z5S7|RSMH_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|73854178|gb|AAZ86885.1| putative apolipoprotein [Shigella sonnei Ss046] gi|323165965|gb|EFZ51745.1| S-adenosyl-methyltransferase MraW [Shigella sonnei 53G] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AVATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|242278175|ref|YP_002990304.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM 2638] gi|263446206|sp|C6BYH4|RSMH_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|242121069|gb|ACS78765.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM 2638] Length = 324 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 130/322 (40%), Positives = 179/322 (55%), Gaps = 11/322 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALD 65 M S H VLL +VI L P PG LD T G G+S + K G+ + LD Sbjct: 1 MESKKLIPEEVHTSVLLNEVIEWLAPKPGGRYLDGTLGMAGHSSAILKIAGEGAELAGLD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGD 122 RD A+ E + + ++ F FS+ + D + VDGVV DLGVSS+ +D + Sbjct: 61 RDEQALELAGERLAPFGDRAHRFHLAFSKFEAALDELGWDTVDGVVLDLGVSSLHLDHAE 120 Query: 123 RGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF K GPLDMRM +G AS +VN+ + DL RIL + GEE AS+I AI+ R Sbjct: 121 RGFSFIKDGPLDMRMDPAGGMPPASSIVNKGSYSDLNRILKLYGEEPLASKITKAIIAAR 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + TT L+S+++K + +R HPAT++FQ LRI VN+E+EEL L + Sbjct: 181 EEEKITTTLQLASIVEKAYPAKRRALSRTHPATKTFQGLRIAVNSELEELKTFLDRIPER 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQ 297 L G + ++SFHSLEDR+VKK F ++S I + + +T+K V+PT+ Sbjct: 241 LSPGARVAIISFHSLEDRIVKKTFKAQSQSCDCPPMQPICTCGKVKLMNVLTRKPVLPTE 300 Query: 298 EDVAFNRRSRSAKLRAGMRTVE 319 E++ N RSRSAKLR RT E Sbjct: 301 EEMKVNTRSRSAKLRVAERTGE 322 >gi|293402027|ref|ZP_06646166.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304419|gb|EFE45669.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 311 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL++ I L+ + +D T G GG+S K ++ A DRD A+ Sbjct: 1 MNKHYSVLLQESIEGLHIQHDGIYVDGTLGRGGHSCEILKQIPDGHLYAFDRDASAIEES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131 + + F+ + FS L++ + GV+ + V DLGVSS Q D +RGFS++ Sbjct: 61 TPRLLQVADNFTCIHSPFSHLKEELSAYGVNRIDGLVLDLGVSSPQFDEAERGFSYRFDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +A ++VN + +DL +I GEE A +IA I K+R P +TT + Sbjct: 121 PLDMRMDQSQALNAYEIVNTWSYQDLVKIFYTYGEETFAKQIARNIEKKRIDKPIRTTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ ++ N + HPA + FQA+RI VN+E+ EL + L+ A + L G + V+S Sbjct: 181 LVDVIKASLPAKVLNKKGHPAKKVFQAIRIAVNDELRELEEVLQEALQMLNPHGRICVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK+ F + S + + PS+ A ++ I KK + +E++ N RS Sbjct: 241 FQSLEDRIVKEAFQTASRPKQYDKRIPILPSDMEEAPYKLINKKPITAQEEELMENNRSH 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRIIERI 310 >gi|261338924|ref|ZP_05966782.1| hypothetical protein ENTCAN_05122 [Enterobacter cancerogenus ATCC 35316] gi|288318749|gb|EFC57687.1| S-adenosyl-methyltransferase MraW [Enterobacter cancerogenus ATCC 35316] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYVDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L V Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLSKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRVAERTNA 313 >gi|189423747|ref|YP_001950924.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ] gi|263447561|sp|B3E3Z0|RSMH_GEOLS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189420006|gb|ACD94404.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ] Length = 313 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 171/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VL +V+ L P PG LD T G GG+S + +I +DRDP A++ E Sbjct: 6 HLSVLAREVMEQLAPRPGGTYLDGTLGGGGHSELILEKIGPDGLLIGIDRDPAALAAASE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG---VSSMQIDCGDRGFSFQKSGPL 133 +R + F Q +F L + + +G++ + L VSS Q+D +RGFSF+ GPL Sbjct: 66 RLRRFGSCFRPLQGSFGDLAELLKQEGINTLDGLLLDLGVSSHQLDTDERGFSFRLDGPL 125 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA+D++ + +L +I+ GEE+ A +IA IV+ RQ P TT L+ Sbjct: 126 DMRMDRSCGDSAADLLQDCSAGELEQIIKEFGEERWAKKIALRIVQTRQETPITTTLQLA 185 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+ T+ + RIHPATR+FQALRI VN E+E++ QG+R+ ALKAGG + V+SFH Sbjct: 186 DLVAGTIPRRFHEERIHPATRTFQALRIAVNQELEQVEQGIRAGIAALKAGGRIAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + M + +T + V+ E+ N R+RSAK Sbjct: 246 SLEDRIVKHLFREAATGCTCPPRMPYCVCNKKPQLRILTGRPVIAGPEETDRNPRARSAK 305 Query: 311 LRAGMR 316 LRA + Sbjct: 306 LRAAEK 311 >gi|332142432|ref|YP_004428170.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str. 'Deep ecotype'] gi|263446686|sp|B4RWY7|RSMH_ALTMD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|327552454|gb|AEA99172.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str. 'Deep ecotype'] Length = 313 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 13/312 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H+ VLL++ I L P + +DATFG GG+S +IA DRDP A+ Sbjct: 4 PNEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEKGRLIAFDRDPQAI 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + FS+ + F + + + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 64 KAAERFADDKR--FSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSF 121 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA+D + A +D+T+++ GEEK RIAHAIV R+ P Sbjct: 122 LRDGPLDMRMDTSRGQSAADWLASAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKDTPIT 181 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ +I + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L Sbjct: 182 RTAQLAKIIDEAV-PVKDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNR 304 V+SFHSLEDRLVK+F +S + ++ + A + + K + P+++++A N Sbjct: 241 VISFHSLEDRLVKRFIKDQSKGKVVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNV 300 Query: 305 RSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 301 RSRSSVLRVAEK 312 >gi|319406014|emb|CBI79645.1| S-adenosyl-methyltransferase [Bartonella sp. AR 15-3] Length = 332 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 164/322 (50%), Positives = 211/322 (65%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGYSR+ G+ VIALDRDP AV GQ + Sbjct: 11 HIPVLLQSVLAGLAPLAGAKVIDGTFGAGGYSRALLNAGAEVIALDRDPQAVREGQALVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L QA FSQL D++ + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 QFFPRLRLVQAEFSQL-DHIVEGLVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN V DL ++ LGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 130 TGFTAADVVNYLKVDDLAQLFKTLGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIEALI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 N IHPATR FQALRI+VNNE+ ELA L + E+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGNHIHPATRVFQALRIYVNNELNELACALFAVERVLKAGGRLAVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KF ++RSG R++ + PA F + K V TQE++ N R+RSA+LR G+RT E Sbjct: 250 KFLSARSGHKKGSRYLPEIKSVPATFIPLYKGVKTATQEELQKNPRARSARLRIGVRTQE 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 +I D + L L ++ F G Sbjct: 310 AAIAAD--MKLFGLAEIAHFEG 329 >gi|254993138|ref|ZP_05275328.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-064] Length = 308 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 168/306 (54%), Gaps = 9/306 (2%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQET 77 VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 1 ETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIK 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + DY ++ + +A F +++ + ++G+ DG+++DLGVSS Q+D +RGFS+ + LD Sbjct: 61 LADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALD 120 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 121 MRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVD 180 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HP R+FQA+RI VN+E+ + L A LK GG + V++FHS Sbjct: 181 IIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+ K F + + + + F+ T+K +VP++E++ N R+RSAKL Sbjct: 241 LEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKL 300 Query: 312 RAGMRT 317 R + Sbjct: 301 RVIEKI 306 >gi|110804146|ref|YP_687666.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 5 str. 8401] gi|123147294|sp|Q0T8B5|RSMH_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110613694|gb|ABF02361.1| putative apolipoprotein [Shigella flexneri 5 str. 8401] Length = 313 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEDEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|196230915|ref|ZP_03129776.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] gi|196225256|gb|EDY19765.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] Length = 332 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 124/304 (40%), Positives = 177/304 (58%), Gaps = 7/304 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H VLL + + L PAPGKVI+D T G GG++ + G+ VI D+DP A++ + Sbjct: 27 YHESVLLAETVERLAPAPGKVIVDGTLGGGGHTAALLAAGAQVIGFDQDPEALAFAGRKL 86 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ QF +F++ + + + +DG + DLGVSS Q+D +RGFSF GPLDM Sbjct: 87 AEFGGQFRPVHTSFAKAGEALDQLGVEKIDGAMLDLGVSSRQLDAPERGFSFMHDGPLDM 146 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + ISA+D+VN L +I GEE A +IA +V+ R APF+TT L+ Sbjct: 147 RMDPTNLISAADLVNTMAGDQLEKIFRNYGEEPAARKIAAHLVRDRLVAPFRTTLQLAQA 206 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +++R HPATR FQALRI VN E+E L GL + L GG L +++FHSLE Sbjct: 207 VERVV--PRHSRTHPATRVFQALRIAVNRELEALTLGLEQFSQRLAPGGRLAIITFHSLE 264 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK FF R+ + + +P +F++IT K VV + + N RSRSAKLR Sbjct: 265 DRIVKVFFKERAAAFIDRPEWPEARPNPIHIFKAITGKPVVASDAEQRANPRSRSAKLRV 324 Query: 314 GMRT 317 R Sbjct: 325 VERI 328 >gi|163816702|ref|ZP_02208065.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759] gi|158447959|gb|EDP24954.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759] Length = 311 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 171/305 (56%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S G +I +D+D A++ + Sbjct: 5 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVRRLGEGGKLIGIDQDEDAIAAATK 64 Query: 77 TMRDYKEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK++ ++ + F ++ D + + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLEPYKDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A D+VN+ +L RIL GEE+ A IA+ I K RQ TT++L+ Sbjct: 125 DMRMDNRQSKTAKDIVNEYPEAELFRILRDYGEERYAKSIAYHICKYRQDKEIDTTEELN 184 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ ++N + HP+ ++FQA+RI +N E++ L + +L GG L +++FH Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + IT+K ++P + ++ N RS+S+K Sbjct: 245 SLEDRIVKTAFRKNENPCICPPNFPVCTCGRKSRGRVITRKPIIPGERELIENSRSKSSK 304 Query: 311 LRAGM 315 LR Sbjct: 305 LRVFE 309 >gi|91205355|ref|YP_537710.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C] gi|122425755|sp|Q1RJ43|RSMH_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91068899|gb|ABE04621.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C] Length = 305 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 125/306 (40%), Positives = 182/306 (59%), Gaps = 5/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74 H+PV+L +++ L P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MQQPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E +YK++F + F + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + +N A KDL ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ + + +I PAT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSCI-GFRKGKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A + + IT K +P+ ++++ N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKL 299 Query: 312 RAGMRT 317 RA + Sbjct: 300 RAAKKI 305 >gi|227885013|ref|ZP_04002818.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972] gi|301048472|ref|ZP_07195498.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1] gi|227837842|gb|EEJ48308.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972] gi|300299686|gb|EFJ56071.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1] gi|307551926|gb|ADN44701.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli ABU 83972] Length = 313 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV D+ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|313680156|ref|YP_004057895.1| S-adenosyl-methyltransferase mraw [Oceanithermus profundus DSM 14977] gi|313152871|gb|ADR36722.1| S-adenosyl-methyltransferase MraW [Oceanithermus profundus DSM 14977] Length = 286 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 172/304 (56%), Gaps = 19/304 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 + T H PVLL + + LLN P V +DATFG GG++R + G V+A+D+DP A Sbjct: 1 MTLTETTHEPVLLHESLDLLNVQPEGVYVDATFGGGGHTRGIVERGGQVVAIDQDPDAHE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D + V G++ DLGVSS D +RGFS+Q+ GP Sbjct: 61 RAERLGGVAIRFVRSNFRDLEAVLDALGVPSVQGILADLGVSSYHFDDPERGFSYQREGP 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G +A++VVN ++L ++ GEE+Q+ RIA AIV+ R+ AP TT L+ Sbjct: 121 LDMRMGHEGPTAAEVVNTLGEEELAELIWRYGEERQSRRIARAIVEARKEAPIATTTQLA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ V F K HPA ++FQALRI+VN+E+ L L +A + L GG L+V+SFHS Sbjct: 181 EIVRRAVGFRKAG--HPARKTFQALRIYVNDELGALEALLEAAGRVLAPGGRLVVISFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK F F+ +TKK ++P E+ A N R+RSAKLR Sbjct: 239 MEDRIVKHFLKG-----------------DPRFRVLTKKPLMPGPEEAARNPRARSAKLR 281 Query: 313 AGMR 316 AG R Sbjct: 282 AGER 285 >gi|308181002|ref|YP_003925130.1| cell division protein MraW [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046493|gb|ADN99036.1| cell division protein MraW [Lactobacillus plantarum subsp. plantarum ST-III] Length = 319 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y + Q + ++ F+ L+ + + VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S +A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F S + ++ +++K VVP+ ++ NR Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301 Query: 305 RSRSAKLRAGMR 316 R+RSAKLRA R Sbjct: 302 RARSAKLRAIER 313 >gi|28378805|ref|NP_785697.1| cell division protein MraW [Lactobacillus plantarum WCFS1] gi|38258035|sp|Q88V76|RSMH_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28271642|emb|CAD64548.1| cell division protein MraW [Lactobacillus plantarum WCFS1] Length = 319 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLEGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y + Q + ++ F+ L+ + + VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S +A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F S + ++ +++K VVP+ ++ NR Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301 Query: 305 RSRSAKLRAGMR 316 R+RSAKLRA R Sbjct: 302 RARSAKLRAIER 313 >gi|330686332|gb|EGG97937.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU121] Length = 311 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVN+ + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A +K G + V+ Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIGLVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T ED+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRIAE 308 >gi|297539600|ref|YP_003675369.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301] gi|297258947|gb|ADI30792.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301] Length = 316 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 111/318 (34%), Positives = 163/318 (51%), Gaps = 13/318 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 S + H+ VLLE+ + L V +D TFG GG+SR + +IA DR Sbjct: 1 MSELSLNTNSHITVLLEEAVQALAIKADGVYVDGTFGRGGHSRKILEKLGSSGRLIAFDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 D A+ +E +FS+ + F+ +Q + + VDG++ DLG+SS QID R Sbjct: 61 DLKAIESSKEI---TDPRFSMVHSHFAGMQAELSEMGVSKVDGILLDLGISSPQIDDASR 117 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQ 181 GFSF+ PLDMRM SG +A+D + + L ++ GEE+ A +IA I +R Sbjct: 118 GFSFRYDAPLDMRMDQSSGQTAADFLANTTEQHLGEVIKNYGEERFAKQIARAIITERND 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L+ ++ V + + +PATR+FQALRI+VN E+EEL+ + L Sbjct: 178 GRAITTTGQLAKVVAGAVTRFEPGQ-NPATRTFQALRIYVNQELEELSLTMPQCLALLAP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDV 300 G L V+SFHSLEDR+VK+F + + + A + K + P+ ++V Sbjct: 237 QGRLAVISFHSLEDRIVKQFIRDQENRDDLPANFPVRAADLPQPKLKGVGKTIKPSTKEV 296 Query: 301 AFNRRSRSAKLRAGMRTV 318 N RSRSA LR RT Sbjct: 297 KANPRSRSAVLRVAERTN 314 >gi|218698505|ref|YP_002406134.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI39] gi|263446431|sp|B7NHI8|RSMH_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218368491|emb|CAR16226.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli IAI39] Length = 313 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQFGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|161504759|ref|YP_001571871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|262826357|sp|A9MQD1|RSMH_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160866106|gb|ABX22729.1| hypothetical protein SARI_02882 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 313 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQAI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRVLGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|291529266|emb|CBK94852.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1] Length = 314 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 159/313 (50%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VL ++ I LN P + +D T G G+S K +I +D+D A+ Sbjct: 1 MEFKHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++ ++ ++ ++ +S +++ + + VDG++ DLGVSS Q+D RGF+++ Sbjct: 61 AAGERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRS 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + ++A D+VN + DL RI+ GE+K A IA IV RQ T Sbjct: 121 EDAPLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITT 180 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ +I+ + + HP+ R++QA+RI +N+E++ L L L GG + Sbjct: 181 TGELNEIIKAAIPKKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRIC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK F + + IT+K ++P+++++ N R Sbjct: 241 IITFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSR 300 Query: 306 SRSAKLRAGMRTV 318 S+SAKLR + Sbjct: 301 SKSAKLRVFEKND 313 >gi|239636344|ref|ZP_04677346.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603] gi|239597699|gb|EEQ80194.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603] Length = 311 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVN+ + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K G + V+ Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T ED+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRIAE 308 >gi|262282191|ref|ZP_06059960.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA] gi|262262645|gb|EEY81342.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA] Length = 316 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + Q F L+ + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIEKGMVTFVQDNFRHLKLQLKKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA VVN + DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDMLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + I++K ++P+ E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAEELELNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKV 314 >gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130] gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130] Length = 394 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 158/331 (47%), Positives = 208/331 (62%), Gaps = 8/331 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 + H+PV+LE+V+ L P G I+DATFGAGGYSR+ G+ VI +DRDP AV+ Sbjct: 57 MSTPDQPHIPVMLEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGATVIGIDRDPDAVA 116 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q + ++ +L FSQL + VDGVV D+GVSSMQID +RGFSF + Sbjct: 117 AAQPMLAEFDGSLTLHHGRFSQLDKICRSAGHETVDGVVADIGVSSMQIDQAERGFSFLR 176 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM SG SA+DVVN DLTR++GILGEE+QASR++ IV+ R PF+TT Sbjct: 177 DGPLDMRMEQSGPSAADVVNLLPRNDLTRVIGILGEERQASRVSAQIVEDRAKRPFETTL 236 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+SL++K + ++IHPATR+FQALRIFVN E+++LAQ L +AE+ L GG L+VV+ Sbjct: 237 QLASLVEKVLSRKAKDKIHPATRTFQALRIFVNGELDQLAQALLAAERVLVPGGRLVVVT 296 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK F R+ + RHM + F I + + + + N R+RSA Sbjct: 297 FHSLEDRLVKIFLKDRAEQASGSRHMPVVDITTPTFNQIKRGAISASAAEAEINPRARSA 356 Query: 310 KLRAGMRTVERSI-----EDDSFVHLPRLPT 335 KLR +RT E +D S LPRLP Sbjct: 357 KLRWAVRTEEPPRVNSNGDDLSIFGLPRLPD 387 >gi|313899190|ref|ZP_07832710.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2] gi|312956013|gb|EFR37661.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2] Length = 311 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 164/310 (52%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL + I L + +D T G GG+S ++ A DRD A+ Sbjct: 1 MMKHYSVLLHESIDNLAIHSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEKS 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + + +L + FS L+ + + G+DG+V DLGVSS Q D RGFS++ Sbjct: 61 RERLAQIGDNVTLIHSNFSNLKRELTARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA VVN+ ++L RI GEE A +IA I K R+ P +TT Sbjct: 121 PLDMRMDQSQKLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKAREVKPIETTFA 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + N + HPA + FQA+RI VN+E+ EL LR A + L GG L V+S Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQLVLRDALELLHVGGRLCVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK F+S S + + P + A ++ + KK + T+E++ N RS Sbjct: 241 FQSLEDRIVKDTFSSCSKPKQYDKRIPILPQDMEAAPYRLLNKKPITATEEELRENMRSH 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRCIERI 310 >gi|118581697|ref|YP_902947.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379] gi|262824775|sp|A1AU69|RSMH_PELPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118504407|gb|ABL00890.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379] Length = 313 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75 H+ V+ E+V+ L+P PG LD T G GG++ + G +I +DRD A+ Sbjct: 6 HLSVMPEEVLRFLSPRPGGCYLDGTLGGGGHAALVAERCAPGGGTLIGMDRDLEALKAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + L F+ + + +DG V DLGVSS Q+D RGFSFQ+ G Sbjct: 66 ERLSRFGDAVRLLHGNFADIATRLDSLGVDALDGFVLDLGVSSHQLDTARRGFSFQQEGA 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG +A+D+VN+ +L RI+ GEE+ A RIA IV+ R AP + T L Sbjct: 126 LDMRMDGDSGETAADLVNRLPEHELERIIREYGEERWAKRIASFIVRARSEAPIENTLRL 185 Query: 192 SSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + +K R+HPATR+FQALRI VN+E+E L +GL+SA LK GG +V+SF Sbjct: 186 VDIIKGAIPKAKWEERLHPATRTFQALRIAVNHELESLERGLKSAIDRLKPGGRGVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + R++ + +T + V T+E++ N RSRSA Sbjct: 246 HSLEDRIVKHVFREYAAGCTCPRNLPVCVCGRQPRVRVLTGRPVTATEEELRDNPRSRSA 305 Query: 310 KLRAGMR 316 KLRA + Sbjct: 306 KLRAVEK 312 >gi|315646023|ref|ZP_07899144.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453] gi|315278784|gb|EFU42098.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453] Length = 317 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 168/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL ++ L P + +D T G G+S +IALD+D +A++ Sbjct: 1 MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSNGRLIALDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---------VPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E M+ Y ++ +L + F L++ VDG++FDLGVSS Q D G+RG Sbjct: 61 AREVMKPYVDRITLVKTNFRDLEEVLRIEVGVDENGQPQVDGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYEYGEEKFSRRIAKVIVERRVQG 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + + HPA RSFQA RI VN+E+ L A + L G Sbjct: 181 PIHTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFKDALHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ F S K + + +K ++P+ E++ Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSVEEI 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 ESNPRARSAKLRIAEK 316 >gi|153809802|ref|ZP_01962470.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174] gi|149833980|gb|EDM89060.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174] Length = 313 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 163/310 (52%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H VLLE+ I L P +D T G G+++ I +D+D A+ Sbjct: 1 MEFKHKSVLLEETIDGLRVKPDGTYVDGTLGGAGHAQEVCRRLSAKGRFIGIDQDQDAIV 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + Y ++ + ++ + + + + + + VDG+V DLGVSS Q+D +RGF+++ Sbjct: 61 AASERLSAYGDRVQIIRSNYCYMANELKNLGIQKVDGIVLDLGVSSYQLDNEERGFTYRV 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A+D+VN + ++L RI+ GE+K A IA IV R AP QTT Sbjct: 121 DAPLDMRMDQRQSRTAADIVNGYDERELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I++++ HPA R+FQA+RI +N E++ L + L L GG + + Sbjct: 181 GELTEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + IT+K ++P++ ++ N RS Sbjct: 241 ITFHSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPSETEMEENPRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|160880611|ref|YP_001559579.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] gi|263433295|sp|A9KM86|RSMH2_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|160429277|gb|ABX42840.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] Length = 317 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 175/314 (55%), Gaps = 9/314 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 ++ H+ VLL++ I LN P + +D T G GG++ K I +D+D Sbjct: 2 SLEEKEFKHISVLLQETIDSLNIKPDGIYVDGTLGGGGHAYEVLKRLSPKGRYIGIDQDE 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ + + ++ +Q ++ ++ + ++ + D VDG++ DLGVSS Q+D +RGF Sbjct: 62 DAIAAAGKRLSEFSDQVTIVRSNYCNMKQVLKDLGIDKVDGILLDLGVSSYQLDTPERGF 121 Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++++ PLDMRM +A D+VN+ + +++ RI+ GE+K A IA IV+ R P Sbjct: 122 SYRENAPLDMRMDNRNSLTARDIVNEYSEQEIYRIIRDYGEDKFAKNIAKHIVRMRSEKP 181 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L+ I+ + + N HPA ++FQA+RI +N+E+E L L LK G Sbjct: 182 LETTDELTEAIKAAIPMKIRMNTGHPAKKTFQAIRIELNHELEVLTNTLEDMIDLLKEDG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302 L +++FHSLEDR+VK F + + ITKK ++P+++++ + Sbjct: 242 RLSIITFHSLEDRIVKAAFRKNENPCVCPPNFPVCVCNRKPKGIHITKKPILPSEQELEY 301 Query: 303 NRRSRSAKLRAGMR 316 N+RS+SAKLR + Sbjct: 302 NKRSKSAKLRVFEK 315 >gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1] gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1] Length = 313 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 138/313 (44%), Positives = 196/313 (62%), Gaps = 9/313 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 H PVLL++V+A + P+P I+DATFGAGGYSR+ + G+ V A DRDP A+ GQ Sbjct: 1 MTAPHTPVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGARVYAFDRDPNAIRDGQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ + SL FS +++ + VD VV D+GVSSMQ+D G+RGF+F GP Sbjct: 61 GMVAEFDGRLSLHAERFSSMREEMTRIGVPQVDAVVMDIGVSSMQLDQGERGFAFSADGP 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS +G SA+D +N A+ + +L GEE+Q+ R+A AIV R P +TT DL+ Sbjct: 121 LDMRMSQAGESAADFLNTADEAAIADVLYQYGEERQSRRVARAIVAAR---PLETTGDLA 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K + +++ PATRSFQA+RI VN+E+ EL GL +AE L+ GG+L VVSFHS Sbjct: 178 RVVRKALGHKPHDKKDPATRSFQAVRIHVNDELGELRAGLNAAETLLREGGVLAVVSFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+F SG AV +P P F ++ K + P+ ++ N RSRS+ Sbjct: 238 LEDRIVKRFLKEASGAGRAVSRHLPGEVPGPPPTFTRVS-KAIRPSGAEIERNPRSRSSI 296 Query: 311 LRAGMRTVERSIE 323 LR +RT + E Sbjct: 297 LRHAIRTSAPARE 309 >gi|322387149|ref|ZP_08060759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus infantis ATCC 700779] gi|321141678|gb|EFX37173.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus infantis ATCC 700779] Length = 316 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 168/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV V+L + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F L+D + D +DG+ +DLGVSS Q+D +RGFS++K+ Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKNA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREQKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEVSTVKVPKGLPFIPDDLKPKMELVSRKPILPSKEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|317501224|ref|ZP_07959429.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090030|ref|ZP_08338919.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897400|gb|EFV19466.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402492|gb|EGG82061.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 3_1_46FAA] Length = 311 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VLL + + LN P V +DAT G GG++ C+ I +D+D A+ Sbjct: 1 MAFEHVSVLLNETVDGLNVKPDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ + E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D +RGFS++ Sbjct: 61 AAGERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRV 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN+ + +L R++ GE+K A IA IV+ R+ P +TT Sbjct: 121 DAPLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVEERRKNPIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I + + HP+ R+FQA+RI +N+E++ L + L + L GG + + Sbjct: 181 GQLNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F H + + IT+K ++P++ + N RS Sbjct: 241 ITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|26246015|ref|NP_752054.1| S-adenosyl-methyltransferase MraW [Escherichia coli CFT073] gi|300981119|ref|ZP_07175365.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1] gi|30173069|sp|Q8FL68|RSMH_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|26106412|gb|AAN78598.1|AE016755_98 S-adenosyl-methyltransferase mraW [Escherichia coli CFT073] gi|300409021|gb|EFJ92559.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1] gi|315294723|gb|EFU54066.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 153-1] Length = 313 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV D+ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+ + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|324008349|gb|EGB77568.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 57-2] Length = 313 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDRRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|218780979|ref|YP_002432297.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans AK-01] gi|263447357|sp|B8FBS6|RSMH_DESAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218762363|gb|ACL04829.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans AK-01] Length = 326 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 127/308 (41%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV V+ ++V++LL+PAPG V++D TFG GG++R+ + +I D D AV+ Q Sbjct: 5 HVSVMKQEVLSLLSPAPGHVVVDGTFGGGGHARAILERILPDGLLIGTDLDEDAVTNAQA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 D + F +F FS ++ + G +G+V DLGVS ++ RGFSFQ+ PL Sbjct: 65 CFADVQNNFRIFHDNFSNIRAVLDQCGLAGANGIVLDLGVSLHLLEKSGRGFSFQREEPL 124 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM S G A DVVN + +L RI GEE+QA RIA IV+RR+ P T+ L Sbjct: 125 DMRMDGSGGGPKAMDVVNAYSQDELARIFLEYGEERQAKRIARRIVQRREDEPITTSGRL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V K RIHPATR FQALRI VNNE+ L + L + L GG L ++SFH Sbjct: 185 ADIVASAV-KGKPGRIHPATRVFQALRIHVNNELAHLEKFLETCLDCLLPGGRLCIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ FA+ + + + +TKKVV P+Q +V N SRSAK Sbjct: 244 SLEDRIVKRRFAALAQGCTCPPDFPVCICGNQPKVKILTKKVVKPSQAEVEKNPMSRSAK 303 Query: 311 LRAGMRTV 318 +RA + Sbjct: 304 IRAMEKLA 311 >gi|73662901|ref|YP_301682.1| S-adenosyl-methyltransferase MraW [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88909221|sp|Q49WW1|RSMH_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72495416|dbj|BAE18737.1| putative methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 311 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L++ I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLKETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLGDEGRLIAIDQDTTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F ++ + + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRKITEILNDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVN+ + L RI GEEK + +IA I + R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWEFEKLVRIFHRYGEEKFSKQIARRIEQNREQKPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ L A A+K G + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSLEQAIDAVKMDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K ++ T ED+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPIIATDEDLEENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|301026110|ref|ZP_07189585.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1] gi|300395681|gb|EFJ79219.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1] Length = 313 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A+S Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIS 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|254557010|ref|YP_003063427.1| cell division protein MraW [Lactobacillus plantarum JDM1] gi|254045937|gb|ACT62730.1| cell division protein MraW [Lactobacillus plantarum JDM1] Length = 319 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 161/312 (51%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y + Q + ++ F+ L+ + + VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S +A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERVVQPIV 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F S + ++ +++K VVP+ ++ NR Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPDYRLVSRKPVVPSDAEIEANR 301 Query: 305 RSRSAKLRAGMR 316 R+RSAKLRA R Sbjct: 302 RARSAKLRAIER 313 >gi|331265736|ref|YP_004325366.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5] gi|326682408|emb|CBZ00025.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5] Length = 316 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 169/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y KE + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKEMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + ++A I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQVARKIEQARELKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEIPKGLPFIPDELKPKMELVSRKPILPSKEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|70726737|ref|YP_253651.1| S-adenosyl-methyltransferase MraW [Staphylococcus haemolyticus JCSC1435] gi|88909220|sp|Q4L5N0|RSMH_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68447461|dbj|BAE05045.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 311 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I L+ + +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L D + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTDILKNLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + SA +VVNQ + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQQLSAYEVVNQWPYEALVKIFYRYGEEKFSKQIARRIETHREHQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I A+ + + +K + T D+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATDTDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|116492952|ref|YP_804687.1| S-adenosyl-methyltransferase MraW [Pediococcus pentosaceus ATCC 25745] gi|122265584|sp|Q03EX7|RSMH_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116103102|gb|ABJ68245.1| SAM-dependent methyltransferase for cell envelope biogenesis [Pediococcus pentosaceus ATCC 25745] Length = 314 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H VLLE+ + L+ + +D T G GG+SR ++ + D+D A+ Sbjct: 2 TEFKHTTVLLEETVNGLDVKEDGIYVDCTLGGGGHSRLILSKLGENGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 Q+ + +Y K Q + ++ F L++ + GVDGV++DLGVSS Q D RGFS+ Sbjct: 62 YNQKNLAEYVAKGQVTFVKSNFRNLKNELNHLGIDGVDGVLYDLGVSSPQFDDAGRGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + +A +VVN+ + DL RI GEEK + ++A I R+ P + Sbjct: 122 RFDAPLDMRMDQTQKLNAREVVNEWSYNDLVRIFFRYGEEKYSKQVARKIESTREEKPIE 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ LI+ + ++ HPA + FQA+RI VN+E+ L + L A + L G + Sbjct: 182 TTGELADLIKSAIPAAARRTGGHPAKKIFQAIRIAVNDELGALEESLEQALQILNPAGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK+ F ++ I + ++ I +K ++P+++++ NR Sbjct: 242 SVITFQSLEDRLVKRMFKEQTEIGDLPAGLPIIPDDMKPKYKLINRKPIIPSEDELEENR 301 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 302 RSHSAKLRIIEK 313 >gi|326797507|ref|YP_004315326.1| ribosomal RNA small subunit methyltransferase H [Sphingobacterium sp. 21] gi|326548271|gb|ADZ76656.1| Ribosomal RNA small subunit methyltransferase H [Sphingobacterium sp. 21] Length = 303 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 167/310 (53%), Gaps = 16/310 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 G H+PV+L++ I L P V +D TFG GG+S + + +IA D+DP A++ Sbjct: 2 DNGYHLPVMLQECIEALAIKPNGVYVDVTFGGGGHSSAIIQHLGEEGRLIAFDQDPDALN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E+F+L F L++ K VDG++ DLGVSS Q D +RGFS + Sbjct: 62 NA-----LPDERFTLIHQNFRYLKNNLRLQGLKQVDGILADLGVSSHQFDEAERGFSIRF 116 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM G A ++N + +DL RI G+ GE + A +A IV R S P T Sbjct: 117 DADLDMRMDRVGELDAKGILNSYSEEDLHRIFGMYGEVQNAKSLAKVIVTSRLSRPINTV 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL S++ K V K N+ + FQALRI VN E+E L + L A+ LK GG L+V+ Sbjct: 177 SDLKSIVSKLVPRGKENK--YYAQLFQALRIEVNKELEALQEFLVQAQAVLKPGGRLVVM 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK F A K + + P F +++K ++ +++++ N R+RS Sbjct: 235 SYHSLEDRLVKNFMAKGKFKGEVEKDFYGNEIKP--FMLVSRKAIIASEDEIRQNNRARS 292 Query: 309 AKLRAGMRTV 318 AKLR + Sbjct: 293 AKLRVAEKLN 302 >gi|325578829|ref|ZP_08148876.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus parainfluenzae ATCC 33392] gi|325159653|gb|EGC71785.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus parainfluenzae ATCC 33392] Length = 322 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 121/325 (37%), Positives = 172/325 (52%), Gaps = 18/325 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTTQNSFSAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ ++ +F + +FS + D +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGFSF K GPLDMRM G+SA++ + Q +V DLT +L GEE+ A RIA AIV+ Sbjct: 118 DRGFSFMKDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + A T+ LS Q K+ HPATRSFQA+RI++N E++EL L SA Sbjct: 178 KRAIKNGTECLSRTSQLAELIAQAVPFKDKHKHPATRSFQAIRIYINAELDELESVLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 L G L ++SFHSLEDR+VK F +S R + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMRKQSKGDDIPRGLPLREDQIQRNQKLKIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 P++ +++ N RSRSA LR R Sbjct: 298 QPSEAEISANPRSRSAVLRIAERVK 322 >gi|327484905|gb|AEA79312.1| rRNA small subunit methyltransferase H [Vibrio cholerae LMA3894-4] Length = 316 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|320450513|ref|YP_004202609.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01] gi|320150682|gb|ADW22060.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01] Length = 286 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 129/308 (41%), Positives = 185/308 (60%), Gaps = 25/308 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M++ I +H+PVL E+V+ LL PG+V +DAT G G+++ + G VI LD+DP Sbjct: 1 MNA-----ITEHIPVLYEEVLNLLQVRPGQVYVDATLGGAGHTKGILERGGLVIGLDQDP 55 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ + F ++ V G++ DLGVSS ++ RGFS+Q Sbjct: 56 EAVARARALGLPGLRVFQQNFRHLKEVLQEAGVSQVAGILADLGVSSFHLEDPKRGFSYQ 115 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G +A +VVN ++DL RIL LGEEKQA RIA AIV+RR+ AP +TT Sbjct: 116 REGPLDMRMGEEGPTAYEVVNTLPLEDLRRILRDLGEEKQAHRIAKAIVERRRKAPIRTT 175 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ V F K HPA ++FQA+R++VN+E+ L + LR AE+ L GG L+V+ Sbjct: 176 LELAEVVRQAVGFRKAG--HPARKTFQAIRMYVNDELGALEEFLRQAEEVLAPGGRLLVI 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDR+VK+F S + +TKK + P+ E+VA N RSRS Sbjct: 234 TFHSLEDRVVKRFLKESS------------------LKVLTKKPITPSPEEVAKNPRSRS 275 Query: 309 AKLRAGMR 316 AKLRA + Sbjct: 276 AKLRAAEK 283 >gi|270292146|ref|ZP_06198361.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143] gi|270279674|gb|EFA25516.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143] Length = 316 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + D + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQDAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQGASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|153802806|ref|ZP_01957392.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|254226626|ref|ZP_04920206.1| conserved hypothetical protein [Vibrio cholerae V51] gi|124121671|gb|EAY40414.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125620845|gb|EAZ49199.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 316 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|291550007|emb|CBL26269.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14] Length = 311 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VLL + + LN P + +DAT G GG++ C +I +D+D A+ Sbjct: 1 MAFEHVSVLLHETVDGLNVKPDGIYVDATLGGGGHAYEVCTKLGEQGRLIGIDQDADAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + E+ ++ ++ + ++ + + VDG+ DLGVSS Q+D +RGFS++ Sbjct: 61 AAGKRLEGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGITVDLGVSSYQLDTAERGFSYRV 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN + +L R++ GE++ A IA IV R P +TT Sbjct: 121 DAPLDMRMDQRQKMTARDIVNDYSESELYRVIRDYGEDRFAKNIAKHIVAERAKGPIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I + + HP+ R+FQALRI +N+E++ L L L GG L + Sbjct: 181 GQLNEIISHAIPMKIQKTSGHPSKRTFQALRIELNHELDVLRDTLDDMIDLLNPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + H + + + IT+K ++P++E++ N RS Sbjct: 241 ITFHSLEDRIVKSSFRKNENPCICPSHFPVCVCGNVSKGKVITRKPILPSEEELTVNSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|62178687|ref|YP_215104.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|68565397|sp|Q57TD8|RSMH_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|62126320|gb|AAX64023.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 312 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 2 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ DG++ DLGVSS Q+D +RGFSF Sbjct: 62 VAQTI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFM 118 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 238 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRELRALGKLMPGEKEVAENP 297 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 298 RARSSVLRIAERTNA 312 >gi|121728362|ref|ZP_01681391.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675217|ref|YP_001217911.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O395] gi|153214084|ref|ZP_01949218.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153826882|ref|ZP_01979549.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153830362|ref|ZP_01983029.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229521240|ref|ZP_04410660.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80] gi|229524395|ref|ZP_04413800.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis VL426] gi|229528604|ref|ZP_04417994.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)] gi|262168390|ref|ZP_06036087.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27] gi|262190392|ref|ZP_06048652.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93] gi|297581036|ref|ZP_06942961.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385] gi|121629353|gb|EAX61784.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124115510|gb|EAY34330.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|146317100|gb|ABQ21639.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148874169|gb|EDL72304.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739298|gb|EDM53554.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|227014303|gb|ACP10513.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae O395] gi|229332378|gb|EEN97864.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)] gi|229337976|gb|EEO02993.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis VL426] gi|229341772|gb|EEO06774.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80] gi|262023282|gb|EEY41986.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27] gi|262033732|gb|EEY52212.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93] gi|297534862|gb|EFH73698.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385] Length = 316 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|317132992|ref|YP_004092306.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense YUAN-3] gi|315470971|gb|ADU27575.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense YUAN-3] Length = 312 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H VLL + I L P V +D T G GG+S + + +IALD DP AV Sbjct: 5 YHQSVLLHESIEALAIRPDGVYVDGTAGGGGHSAAIAAGLES-GRLIALDADPDAVRAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + + Q+ F ++ + D VDG++ DLGVSS Q D RGFS++ P Sbjct: 64 ERLAPFGSKACVVQSNFRDMKRVLADLGIAEVDGILLDLGVSSHQFDTPARGFSYRADAP 123 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS SG+ A +++ A+ +L RIL GEE+ A RIA AI KRR++ P +TT +LS Sbjct: 124 LDMRMSQSGLGARELLATASYAELVRILREYGEERFAPRIAAAICKRRETKPLETTFELS 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+++ HPA ++FQALR+ VN E+E L+ L A L+ GG L +++FHS Sbjct: 184 ELVREAYPAPARRSGHPARKTFQALRMAVNGELESLSVLLDDALALLRPGGRLCIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F S + + + + K+ V+P+ E++ N+RSRSA+L Sbjct: 244 LEDRMVKQRFLSWAQGCICPPDFPVCVCGRKPQVRVVYKRGVLPSAEEIEANQRSRSARL 303 Query: 312 RAGMRTV 318 R + Sbjct: 304 RVAEKLE 310 >gi|229514038|ref|ZP_04403500.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21] gi|229349219|gb|EEO14176.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21] Length = 316 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 173/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ L A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALCGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|307711383|ref|ZP_07647801.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321] gi|307616801|gb|EFN95983.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321] Length = 316 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQTRLHEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|168464328|ref|ZP_02698231.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443193|ref|YP_002039352.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|262826395|sp|B4SU42|RSMH_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194401856|gb|ACF62078.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632559|gb|EDX51013.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 313 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQAI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|223043777|ref|ZP_03613820.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14] gi|222442874|gb|EEE48976.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14] Length = 311 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++++ + + F +L + + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKVVLKEHLHKVTFVHNNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ HPA R FQA+RI VN+E+ + A +++ G + V+ Sbjct: 181 QLVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I + + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|254491294|ref|ZP_05104474.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxidans DMS010] gi|224463423|gb|EEF79692.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxydans DMS010] Length = 312 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 181/314 (57%), Gaps = 10/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + +H+PVLL + IA L+ LDATFG GG+SR+ + ++ LDRDP Sbjct: 1 MTESHSEHLPVLLNETIAALSVKADGKYLDATFGRGGHSRAILALLSDDGRLLGLDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 AV+ G++ + +F++ FS++ + +DG++ D+GVSS Q+D +RGF Sbjct: 61 AVATGKQ-LAQQDNRFAIEYCAFSEMATAAHARLWQNNIDGILMDIGVSSPQLDDAERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K GPLDMRM+ + GISA++ + A + D+ ++ LGEE+ RIA AIV+ R P Sbjct: 120 SFSKDGPLDMRMNPNAGISAAEWLATAEMDDIAHVIKTLGEERYGKRIARAIVETRDENP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L+ K S+ HPATR+FQA+RIF+NNE+EEL L A L GG Sbjct: 180 ITTTKQLADLVDKA-SPSREKHKHPATRTFQAIRIFINNELEELTLALEQALDVLAVGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+FF + H + I K + ++ ++A N Sbjct: 239 LVVISFHSLEDRIVKRFFRDEARGDDFPAHFPVTVEQLNPRLKIIGKAIKASETELADNP 298 Query: 305 RSRSAKLRAGMRTV 318 R+RSA LR + Sbjct: 299 RARSAVLRVAEKLA 312 >gi|121602081|ref|YP_989236.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583] gi|263445982|sp|A1UTD3|RSMH_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120614258|gb|ABM44859.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583] Length = 331 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 156/320 (48%), Positives = 209/320 (65%), Gaps = 2/320 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE V+A L P G ++D TFGAGGY+R+ G+NV ALDRDP A+ G+ + Sbjct: 11 HIPVLLEPVLAGLAPLSGATVIDGTFGAGGYTRALLNAGANVTALDRDPHAIREGKPLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L Q FSQL + + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 QFFPRLRLVQTEFSQLDRVIEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SASDVVN + DL +I ILGEE+ +SRIA I KRR+ PF T+DL+ I+ + Sbjct: 130 TGLSASDVVNHLKIDDLIQIFRILGEERHSSRIAKMIEKRRRIRPFLRTRDLAHEIEVLI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+E+ EL +GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDELNELTRGLFAAERVLKAGGRLGVVSFHSLEDRIVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ SG R++ + PA F + K ++E++ N R+RSA+LR G+RT Sbjct: 250 KFFSFCSGNRKGSRYLPEVESAPATFFPLFKGGKTASEEELQKNPRARSARLRIGIRTQV 309 Query: 320 RSIEDD-SFVHLPRLPTLSQ 338 ++E D L + Sbjct: 310 DAMEADMKLFGLKEIANFES 329 >gi|322713140|gb|EFZ04711.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 312 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 2 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ DG++ DLGVSS Q+D +RGFSF Sbjct: 62 VAQTI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFM 118 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 179 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 238 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 297 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 298 RARSSVLRIAERTNA 312 >gi|222031913|emb|CAP74651.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli LF82] gi|312944688|gb|ADR25515.1| S-adenosyl-methyltransferase MraW [Escherichia coli O83:H1 str. NRG 857C] Length = 313 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIYGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|239623438|ref|ZP_04666469.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521469|gb|EEQ61335.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 168/312 (53%), Gaps = 8/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + H VLL + + LN PG + +D T G GG++ CK +I +D+D A Sbjct: 1 MEEQAFVHKSVLLYETVGSLNIKPGGIYVDGTLGGGGHAYEVCKRLGSGRLIGIDQDADA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +K++ ++ ++ + ++ + + VDG+ DLGVSS Q+D RGF++ Sbjct: 61 IEAAGRRLEHFKDKVTIVRSNYENIRTVLNELGLLKVDGIYLDLGVSSYQLDTASRGFTY 120 Query: 128 QKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM + + D+VN +L RI+ GE+ A IA IV+ R P + Sbjct: 121 REDAPLDMRMDQRNTTTAADIVNTYTEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +I+ + + HPA R+FQA+RI N+E++ L Q + + + L GG L Sbjct: 181 TTGELAEIIKAAIPARVRATGGHPAKRTFQAIRIECNHELDVLEQSIDTMIELLNPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + + +++K ++P++E++ N Sbjct: 241 SIITFHSLEDRIVKNRFRTNENPCICPHEFPVCVCGRKSKGKVVSRKPILPSKEELEENS 300 Query: 305 RSRSAKLRAGMR 316 RS+SAKLR R Sbjct: 301 RSKSAKLRVFER 312 >gi|295109202|emb|CBL23155.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162] Length = 314 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 165/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H VLL++ I L+ P + +D T G G++ I +D+D A+ Sbjct: 1 MEFKHKSVLLDETIEGLSIRPDGIYVDGTLGGAGHASEVCQRLSAKGRFIGIDQDQDAII 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + Y+++ ++ ++ + + + + + + V+G+V DLGVSS Q+D +RGF+++ Sbjct: 61 AASERLAAYEDRVTIIRSNYCYMVNELKNLGIQKVNGIVLDLGVSSYQLDNEERGFTYRV 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A+D+VN + K+L RI+ GE+K A IA IV R AP QTT Sbjct: 121 DAPLDMRMDQRQSRTAADIVNGYDEKELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I++++ HPA R+FQA+RI +N E++ L + L L GG + + Sbjct: 181 GELTEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + IT+K ++P+ ++ N RS Sbjct: 241 ITFHSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKESKGKVITRKPILPSAVEMEENPRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|332969039|gb|EGK08079.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella kingae ATCC 23330] Length = 321 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 108/313 (34%), Positives = 167/313 (53%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ +H+ VLL + +A LN P V +D TFG GG+SR +I D+DP Sbjct: 1 MNTQTFEHITVLLHEAVAALNIQPNGVYVDGTFGRGGHSRLILSQLGEQGRLIVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ Q+ + + S+ F+ + + +DG +FDLG+SS Q+D G RGFS Sbjct: 61 AIEVAQK-LAQQDARVSVVHNGFATFEAACTNLGLDKIDGALFDLGISSPQVDDGSRGFS 119 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G SA++ + A+ +++ ++ GEE+ + +IA IV +R +P Sbjct: 120 FRFDAPLDMRMDTTRGQSAAEWLAVASEQEIHEVIKNYGEERFSRQIARTIVAQRSESPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+++ + V S+ ATR+FQA+RIF+N E++E+ Q L L GG L Sbjct: 180 NTTRQLAAITAQCV-RSRERGQDRATRTFQAIRIFINRELDEVEQVLPQVVNRLNVGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK+F S + I P + K + ++V N Sbjct: 239 AVIAFHSLEDRIVKQFMRQHSSHAPLPKWAAIKEADLPQPPLQLIGKASKASVQEVQHNP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 299 RARSAVLRVAERT 311 >gi|149910619|ref|ZP_01899257.1| S-adenosyl-methyltransferase [Moritella sp. PE36] gi|149806347|gb|EDM66322.1| S-adenosyl-methyltransferase [Moritella sp. PE36] Length = 313 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 122/307 (39%), Positives = 182/307 (59%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + +A L+ P + +D TFG GG+SR +IA+DRDP A++ G+ Sbjct: 7 HVSVLLNETVAGLDLKPDGIYIDGTFGRGGHSRFILSQLGENGRLIAIDRDPEAIAVGEA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ +F + FS + DY+ +K +DGV+ DLGVSS Q+D RGFSF + GP Sbjct: 67 -LKLEDPRFDIVHGPFSGIADYMENKGLTGHIDGVLLDLGVSSPQLDDASRGFSFLRDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + GISA+ + A+ D+ +L + GEE+ A +IA A+V R PF+TT L Sbjct: 126 LDMRMDPTSGISAAKWLATADYDDIVWVLKVFGEERFARKIARAVVFDRDDKPFETTSQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +SLI + V SK HPATRSFQA+RI++N+E+EE+ + L A + LK+GG L V+SFH Sbjct: 186 ASLICRVVPKSKKETKHPATRSFQAIRIYINSELEEIERALAGALQCLKSGGRLSVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F ++ + K++ P+++++ N R+RS+ Sbjct: 246 SLEDRIVKQFIRKQARGKEVPYGLPIMQEEIDKTRTMKAIGKMLKPSEDELELNPRARSS 305 Query: 310 KLRAGMR 316 LR + Sbjct: 306 VLRVAEK 312 >gi|293364229|ref|ZP_06610955.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|307702416|ref|ZP_07639372.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|291317075|gb|EFE57502.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|307623998|gb|EFO02979.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037] Length = 316 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|56412392|ref|YP_149467.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361328|ref|YP_002140963.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|68565445|sp|Q5PDH4|RSMH_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826422|sp|B5BLG4|RSMH_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56126649|gb|AAV76155.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092803|emb|CAR58229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 313 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQAI---SDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193] gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193] Length = 330 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 152/330 (46%), Positives = 203/330 (61%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M++ G HVPVLL ++ + P LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MTTDRPTPSGPHVPVLLRPLLKAVAPVS-GRWLDGTFGAGGYTRGLLEAGAEQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q DY ++ L + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAQPWAADYGDRLVLQEGVFSKMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG SA+D+V + + L IL GEE+ + RIA +IVK R+ P T Sbjct: 118 MRDGPLDMRMSQSGPSAADLVAELSEVQLADILFHFGEERASRRIAKSIVKTRELEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI+ + +K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLQLAKLIEGCLPRAKPGKSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+ K A R+ P+ F+ +T+K V P +++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGRANRYAPEVAEIPSQFELVTRKAVGPDDDELAENPRS 297 Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPT 335 RSA+LR G RT + +P+L Sbjct: 298 RSARLRVGRRTDAAPVPISAKDLSMPQLKE 327 >gi|251792015|ref|YP_003006735.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus NJ8700] gi|263446623|sp|C6AKG2|RSMH_AGGAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247533402|gb|ACS96648.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus NJ8700] Length = 322 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 172/325 (52%), Gaps = 18/325 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + +H VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTHLNAFSSVEHSTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGKLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP AV+ Q+ +F + TFS++ + +DG++ DLGVSS Q+D Sbjct: 61 RDPKAVAEAQKI---QDPRFQIEHNTFSEILSICEKRGLVGKIDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF K GPLDMRM GISA++ + Q + +DL +L GEE+ A +IA AIV Sbjct: 118 ARGFSFMKDGPLDMRMDDSKGISAAEWLQQVSEQDLAWVLKTFGEERFAKKIAKAIVNYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA ++ L+ +Q K+ HPATRSFQA+RIF+N E++EL + L+SA Sbjct: 178 KSAVQNGSEFLTRTLQLAELIAHTVPFKDKHKHPATRSFQAIRIFINAELDELEKVLQSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 L G L V+SFHSLEDR+VK F +S + + Q + K + Sbjct: 238 LTVLAPAGRLSVISFHSLEDRMVKHFMRKQSQGREIPKGLPLREDQIQRNQTLKVIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 +PT ++A N R+RSA LR R Sbjct: 298 MPTDAEIAQNPRARSAVLRVAERLN 322 >gi|289168599|ref|YP_003446868.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6] gi|288908166|emb|CBJ23008.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6] Length = 316 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + N+ HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKNKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|295688554|ref|YP_003592247.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756] gi|295430457|gb|ADG09629.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756] Length = 311 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 144/317 (45%), Positives = 200/317 (63%), Gaps = 11/317 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS+A H+ VLL++V+ L PG V++D TFGAGGY+R+ G++VI DRDP Sbjct: 1 MSAA------PHISVLLDEVVEALGAGPGDVVVDGTFGAGGYTRAVLATGASVIGFDRDP 54 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D +F L QA FS++ D + + VDGV+ DLGVSSMQ+D +RGFSF Sbjct: 55 TVQRFTEGLPAD---RFRLIQARFSEMLDELGPESVDGVMLDLGVSSMQLDQAERGFSFM 111 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM +G +A+D+VN + +L RIL + GEE + RIA I++RR+ PF+ T Sbjct: 112 RDGPLDMRMGDTGPTAADLVNTLDHAELARILYVYGEEHASRRIASFILRRREERPFERT 171 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ +I++ V K ++HPATRSFQ LRI VN+E+ EL GL +AE+ LK GG L+VV Sbjct: 172 LDLAEVIERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVV 231 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F A R+G+ FQ I+ K + P + ++A N R+ Sbjct: 232 TFHSLEDRIVKAFLAERAGRTPGGSRHAPPVQAGAQPSFQLISNKAIAPGEAELAANPRA 291 Query: 307 RSAKLRAGMRTVERSIE 323 RS+KLRA +RT E Sbjct: 292 RSSKLRAAVRTEAPVWE 308 >gi|295098586|emb|CBK87676.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 313 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRVEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L + Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|322375922|ref|ZP_08050433.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300] gi|321279190|gb|EFX56232.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300] Length = 316 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGTYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|197265544|ref|ZP_03165618.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243799|gb|EDY26419.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 313 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 120/315 (38%), Positives = 178/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIAHAIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15] gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000] gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15] gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000] Length = 311 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 146/317 (46%), Positives = 205/317 (64%), Gaps = 11/317 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS+A H+ VLL++V+ L+ PG V++D TFGAGGY+R+ G++V+A DRDP Sbjct: 1 MSAA------PHISVLLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGASVVAFDRDP 54 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D +F L QA FS++ D + + V+GV+ DLGVSSMQ+D +RGFSF Sbjct: 55 TVRQFAANLPAD---RFRLVQARFSEMLDELGPESVEGVMLDLGVSSMQLDQAERGFSFM 111 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM +G +A+D+VN + +L +IL + GEE + RIA I++RR+ PF+ T Sbjct: 112 RDGPLDMRMGDTGPTAADLVNTLDHAELAKILYVYGEEHASRRIASFILRRREERPFERT 171 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ +I++ V K ++HPATRSFQ LRI VN+E+ EL GL +AE+ LK GG L+VV Sbjct: 172 LDLAEVIERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVV 231 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F A R+GK P A A FQ I+ K + P++ ++A N R+ Sbjct: 232 TFHSLEDRIVKAFLAERAGKAPGGSRHAPPVAAGAAPSFQLISNKAIAPSEAELAVNPRA 291 Query: 307 RSAKLRAGMRTVERSIE 323 RS+KLRA +RT E Sbjct: 292 RSSKLRAAVRTDAPVWE 308 >gi|296313573|ref|ZP_06863514.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC 43768] gi|296839874|gb|EFH23812.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC 43768] Length = 319 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 12/320 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I H+ VLL + + L + +D TFG GG+SR +I D+DP Sbjct: 2 IGAESYRHITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQ 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ +E + ++ + F Q + D VDG +FDLG+SS QID G RGFS Sbjct: 62 AIAVAEE-LARSDKRVGVVHGGFVSFQTALDDLGIGKVDGALFDLGISSPQIDDGSRGFS 120 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P Sbjct: 121 FRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L Sbjct: 181 DTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKQGGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+VK+F S R + ++ + + + + P + ++A N Sbjct: 240 AVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAEIAAN 298 Query: 304 RRSRSAKLRAGMRTVERSIE 323 R+RSA LR RT E Sbjct: 299 PRARSAVLRVAERTAGPIPE 318 >gi|237807292|ref|YP_002891732.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187] gi|262825943|sp|C4LA17|RSMH_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237499553|gb|ACQ92146.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187] Length = 308 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 179/308 (58%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P + +D TFG GG+SR + + A+DRDP AV+ + Sbjct: 2 EHITVLLQEAVDGLAIRPDGIYVDGTFGRGGHSRLILQQLGPQGRLYAIDRDPQAVAVAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F + FS L +Y+ ++ VDG++ DLGVSS Q+D +RGFSF G Sbjct: 62 EW---QDPRFEIISGPFSSLHEYMAERGLLGKVDGLLLDLGVSSPQLDEAERGFSFMNDG 118 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA++ + A+V D+ +L GEE+ A+RIA AIV R + P+ T+ Sbjct: 119 PLDMRMDPLHGESAAEWLLHADVDDIAWVLRTYGEERFANRIARAIVADRVTTPYTRTRQ 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V + ++ HPATRSFQALRI VN E++E+ + L+++ L GG L V+SF Sbjct: 179 LAEMIARVVPNKEKHK-HPATRSFQALRIHVNQELKEIEETLKASLSVLAPGGRLAVISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F + + R + + Q++ K + P +V+ N RSRS Sbjct: 238 HSLEDRIVKQFIRQQEKGIQPPRGLPITEDQIRKTQTLHSVGKAIKPADSEVSDNVRSRS 297 Query: 309 AKLRAGMR 316 + LR R Sbjct: 298 SVLRVAER 305 >gi|295425110|ref|ZP_06817815.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM 11664] gi|295065169|gb|EFG56072.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM 11664] Length = 315 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 13/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG+++ +I D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKDGGLYVDATFGGGGHAKYLLSKLNTGTLIGFDQDEYAIKA 60 Query: 74 GQETM-----RDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + L FS L+ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKLNFTDLLQEDSNPRLQLVHDNFSHLEQDLVKLGYPDGIDGIYYDLGVSSPQFDQAERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM S A +VNQ++ +DL IL G+EK + +IAH IV++R+ Sbjct: 121 FSYRYNARLDMRMDQSKELDAYQLVNQSSQRDLANILYKYGDEKFSRQIAHRIVEKRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L +I++ + + HPA +SFQALR+ VN+E+E L L A K L+ Sbjct: 181 PIETTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELEVLQTSLEEAVKLLRPK 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + + + +K + + ++ Sbjct: 241 GRISVITFQSDEDKIVKKIFKKYSEVEVPRGMPMIPDGMKPTLRLVNRKPITASALELEN 300 Query: 303 NRRSRSAKLRAGMRT 317 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEKI 315 >gi|261211507|ref|ZP_05925795.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341] gi|262404723|ref|ZP_06081278.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586] gi|260839462|gb|EEX66088.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341] gi|262349755|gb|EEY98893.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586] Length = 316 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S+ + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSEWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|258625131|ref|ZP_05720048.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603] gi|262166452|ref|ZP_06034189.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223] gi|262170644|ref|ZP_06038322.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451] gi|258582582|gb|EEW07414.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603] gi|261891720|gb|EEY37706.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451] gi|262026168|gb|EEY44836.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223] Length = 316 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|307704193|ref|ZP_07641116.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597] gi|307622224|gb|EFO01238.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597] Length = 316 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|315633809|ref|ZP_07889098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Aggregatibacter segnis ATCC 33393] gi|315477059|gb|EFU67802.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Aggregatibacter segnis ATCC 33393] Length = 322 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 171/323 (52%), Gaps = 18/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 MS + +H VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MSHLNAFSSAEHATVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP AV Q+ +F + + FS + +DG++ DLGVSS Q+D Sbjct: 61 RDPKAVVEAQKI---QDSRFHIEHSAFSDILPICEKLNLVGKIDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA++ + + +DL +L GEE+ A +IA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDDSKGMSAAEWLQHVSEQDLAWVLKTFGEERFAKKIASAIVNYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + L+ +Q K+ HPATRSFQA+RIF+N+E++EL + L+SA Sbjct: 178 KSAVQNGGECLTRTLQLAELIAQTVPFKDKHKHPATRSFQAIRIFINSELDELEKVLQSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 L GG L ++SFHSLEDR+VK F +S + + Q + K + Sbjct: 238 LTVLAPGGRLSIISFHSLEDRMVKHFMRKQSQGEDIPKGLPLREDQIQRNQTLKVIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+ E++A N R+RSA LR R Sbjct: 298 MPSDEEIAQNPRARSAVLRIAER 320 >gi|319899165|ref|YP_004159258.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73] gi|319403129|emb|CBI76687.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73] Length = 346 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 162/325 (49%), Positives = 212/325 (65%), Gaps = 3/325 (0%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PVLL+ V+A + P G ++D TFGAGGYSR+ G+ VIALDRDP A+ GQ Sbjct: 22 VERHIPVLLQSVLAGIAPLAGARVIDGTFGAGGYSRALLNAGAEVIALDRDPLAIREGQA 81 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + L QA FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMR Sbjct: 82 LVDQFFPRLHLIQAKFSQLDRIV-EGEVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMR 140 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ +G +A+DVVN V DL ++ LGEE+ A RIA I KRR PF T DL+ I+ Sbjct: 141 MAQTGFTAADVVNYLKVDDLAQLFKTLGEERYAGRIARMIDKRRYVRPFLRTIDLAHAIE 200 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKA G L VVSFHSLEDR Sbjct: 201 TLIGRKPGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAEGRLAVVSFHSLEDR 260 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VKKF ++RSG R++ + PA F + K V TQE++ N R+RSA+LR G+R Sbjct: 261 MVKKFLSARSGYKKGSRYLPEIKSVPATFVPLFKGVKTATQEELQQNPRARSARLRIGVR 320 Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341 T E +I D + L L +++F G Sbjct: 321 TQEAAIAAD--MKLFGLAEIARFEG 343 >gi|237729380|ref|ZP_04559861.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2] gi|226909109|gb|EEH95027.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2] Length = 313 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVI-AAAMPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGKMMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|16763510|ref|NP_459125.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550685|ref|ZP_02344442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989993|ref|ZP_02571093.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230399|ref|ZP_02655457.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168234884|ref|ZP_02659942.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243465|ref|ZP_02668397.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262195|ref|ZP_02684168.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820886|ref|ZP_02832886.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449989|ref|YP_002044090.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469862|ref|ZP_03075846.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735661|ref|YP_002113138.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248687|ref|YP_002145106.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243393|ref|YP_002214072.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386674|ref|ZP_03213286.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351459|ref|YP_002225260.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855634|ref|YP_002242285.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224581963|ref|YP_002635761.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911177|ref|ZP_04655014.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20139016|sp|Q8ZRU8|RSMH_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826349|sp|B5F7V6|RSMH_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826360|sp|B5FI64|RSMH_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826371|sp|B5R2L6|RSMH_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826385|sp|B5RH56|RSMH_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826391|sp|B4TJ79|RSMH_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826413|sp|C0Q5H8|RSMH_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826460|sp|B4TXH0|RSMH_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16418619|gb|AAL19084.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408293|gb|ACF68512.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456226|gb|EDX45065.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711163|gb|ACF90384.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212390|gb|ACH49787.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197292032|gb|EDY31382.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937909|gb|ACH75242.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603772|gb|EDZ02317.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271240|emb|CAR36028.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324445|gb|EDZ12284.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331448|gb|EDZ18212.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335013|gb|EDZ21777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337535|gb|EDZ24299.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342387|gb|EDZ29151.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348778|gb|EDZ35409.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707437|emb|CAR31710.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466490|gb|ACN44320.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245353|emb|CBG23142.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991798|gb|ACY86683.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156748|emb|CBW16223.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911089|dbj|BAJ35063.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222306|gb|EFX47378.1| rRNA small subunit methyltransferase H [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128440|gb|ADX15870.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621816|gb|EGE28161.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626486|gb|EGE32829.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987073|gb|AEF06056.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 313 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|229822998|ref|ZP_04449068.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271] gi|229787811|gb|EEP23925.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271] Length = 314 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 167/314 (53%), Gaps = 11/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + + L+ P V +D T G G+++ ++ A D+D A++ Sbjct: 1 MEFKHETVLLHETVDGLDIKPDGVYVDCTLGGAGHAQYLLGQLGPQGHLYAFDQDMTAIN 60 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + DY K Q + F L+ + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 NAKLKLADYVEKGQVTFIHQNFRHLKQALEELGISQVDGIYYDLGVSSPQLDVAERGFSY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM+ SA +VVN+ +DL IL GEEK A RIA AI +RR P + Sbjct: 121 GQEARLDMRMNQEQALSAYEVVNEWPYEDLVHILYRYGEEKFAKRIARAIEERRAQRPIE 180 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +++ + ++ HPA RSFQA+RI VN+E+ + L A LK G + Sbjct: 181 TTTELAEIVKMAIPAATRRTGGHPAKRSFQAIRIAVNDELGAVEDSLEQALTLLKPEGRV 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDRLVK+ F S + R + A F + +K +V + E++ N Sbjct: 241 SVITFHSLEDRLVKQLFKEVSQEPEVPRGLPVLPGQMQAPFTLVNRKPIVASPEELEANN 300 Query: 305 RSRSAKLRAGMRTV 318 RSRSAKLR + Sbjct: 301 RSRSAKLRILRKNS 314 >gi|169334628|ref|ZP_02861821.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM 17244] gi|169259345|gb|EDS73311.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM 17244] Length = 308 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 167/306 (54%), Gaps = 8/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VL ++ I +LN + +D T G G+S CK S I +D+D F + Sbjct: 2 KHISVLYQETIDMLNIKEDGIYVDGTMGGAGHSLGICKKLSEEGIFIGIDQDDFVFDRAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + F +++ + D +DG++ DLGVSS QID RGFSF+K GP Sbjct: 62 VRLESTDCKKEFVKGNFHDIKEILMDLGIDKIDGMMADLGVSSFQIDDETRGFSFKKDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA ++VN + +DL R++ GEE+ A IA I+K R+ P +TT +L Sbjct: 122 LDMRMDKSKSFSAKELVNTYSYEDLRRVISEYGEEQFAGNIAKHILKNREEKPIETTYEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI VN+EI+ L Q + L GG L V++FH Sbjct: 182 VEIIKNAIPKKFHQMKHPAKKTFQAIRIEVNDEIDALKQSVEDMIDVLDKGGRLAVITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VKK F+ + + + + +T+K ++PT+E++ N RSRSAK Sbjct: 242 SLEDRIVKKVFSEYAKGCTCPKEFPVCVCGNTPKVKVLTRKPLLPTEEEIEANPRSRSAK 301 Query: 311 LRAGMR 316 LR + Sbjct: 302 LRVIEK 307 >gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2] gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2] Length = 321 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 160/317 (50%), Positives = 209/317 (65%), Gaps = 6/317 (1%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ +++ + +L Sbjct: 2 IDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEKEFPGRLNLV 61 Query: 89 QATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLDMRMS G S Sbjct: 62 ESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLDMRMSSRGPS 121 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 A+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ I+ V + Sbjct: 122 AADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANAIETLVGRNP 181 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLEDR+VK+FFA Sbjct: 182 KDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLEDRMVKRFFA 241 Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 R+G RHM ++ F K V PT E+ N R+RSAKLRAG+RT +E Sbjct: 242 DRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAGIRTENPPLE 301 Query: 324 DD-SFVHLPRLPTLSQF 339 DD S LP+LP ++ Sbjct: 302 DDLSLFGLPKLPETNEL 318 >gi|296101245|ref|YP_003611391.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055704|gb|ADF60442.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 313 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L + Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|114045888|ref|YP_736438.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7] gi|123030979|sp|Q0HZS4|RSMH_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113887330|gb|ABI41381.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7] Length = 313 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGENGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV + +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK A IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK+F S + + + + K ++P+ E++ Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|15642406|ref|NP_232039.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587636|ref|ZP_01677400.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153818411|ref|ZP_01971078.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822223|ref|ZP_01974890.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227082532|ref|YP_002811083.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2] gi|229507529|ref|ZP_04397034.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286] gi|229512275|ref|ZP_04401754.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33] gi|229519411|ref|ZP_04408854.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9] gi|229607035|ref|YP_002877683.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236] gi|254849531|ref|ZP_05238881.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio cholerae MO10] gi|255746918|ref|ZP_05420863.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101] gi|262161539|ref|ZP_06030649.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1] gi|298500231|ref|ZP_07010036.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757] gi|20139220|sp|Q9KPF9|RSMH_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504940|sp|C3LQV4|RSMH_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9656982|gb|AAF95552.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548146|gb|EAX58219.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126511044|gb|EAZ73638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126520233|gb|EAZ77456.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227010420|gb|ACP06632.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2] gi|229344100|gb|EEO09075.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9] gi|229352240|gb|EEO17181.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33] gi|229355034|gb|EEO19955.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286] gi|229369690|gb|ACQ60113.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236] gi|254845236|gb|EET23650.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio cholerae MO10] gi|255735320|gb|EET90720.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101] gi|262028850|gb|EEY47504.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1] gi|297540924|gb|EFH76978.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757] Length = 316 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|210608682|ref|ZP_03287959.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787] gi|210152939|gb|EEA83945.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787] Length = 311 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 167/311 (53%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 + +H VLLE+ + LN P + +D T G GG++ I +D+D A+ Sbjct: 1 MVFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAYEVCKHLNNKGRFIGIDQDEAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D+ E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D +RGFS++ Sbjct: 61 AAGSRLIDFGERVTIVRSNYCDMKSKLQELGIDKVDGIVLDLGVSSYQLDTAERGFSYRV 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN+ + DL RI+ GE+K A IA IV R+ P +TT Sbjct: 121 DAPLDMRMDRRQKMTAKDIVNEYSEMDLFRIIRDYGEDKFAKNIAKHIVLEREKGPIETT 180 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I++ + HPA R+FQA+RI +N E+E L + L + L G + + Sbjct: 181 GQLIEIIKRAIPMKFQKTAGHPAKRTFQAIRIELNRELEVLRESLDDMIELLNKDGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F H + + + IT+K ++P+ E++ N RS Sbjct: 241 ITFHSLEDRIVKGIFRKNENPCTCPPHFPVCVCGNESKGRVITRKPILPSAEELEENSRS 300 Query: 307 RSAKLRAGMRT 317 +SAKLR RT Sbjct: 301 KSAKLRIFERT 311 >gi|315611782|ref|ZP_07886704.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC 49296] gi|315316197|gb|EFU64227.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC 49296] Length = 316 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTAE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|309776027|ref|ZP_07671019.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 3_1_53] gi|308916309|gb|EFP62057.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 3_1_53] Length = 311 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 163/310 (52%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL++ I L + +D T G GG+S ++ A DRD A+ Sbjct: 1 MMKHYSVLLQESIDNLAIRSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + +L + FS ++ + G+DG+V DLGVSS Q D RGFS++ Sbjct: 61 RERLTRIGSNVTLIHSNFSNVKSELEARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA VVN+ ++L RI GEE A +IA I K R++ P +TT + Sbjct: 121 PLDMRMDQSQQLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKARETKPIETTLE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + N + HPA + FQA+RI VN+E+ EL LR A L GG L V+S Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQMVLRDALALLHVGGRLCVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK F + S + + P + A ++ + KK + T++++ N RS Sbjct: 241 FQSLEDRIVKDTFVACSKPKQYDKRLPILPQDMEEAPYRLVNKKPITATEDELRENMRSH 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRCIERI 310 >gi|16759115|ref|NP_454732.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140665|ref|NP_804007.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052857|ref|ZP_03345735.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426162|ref|ZP_03358912.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585689|ref|ZP_03367515.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213858022|ref|ZP_03384993.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20139004|sp|Q8Z9H4|RSMH_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25302091|pir||AE0517 conserved hypothetical protein STY0140 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501405|emb|CAD01277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136289|gb|AAO67856.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 313 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 120/315 (38%), Positives = 179/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIAHAIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|91776629|ref|YP_546385.1| methyltransferase [Methylobacillus flagellatus KT] gi|123078758|sp|Q1GYZ3|RSMH_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91710616|gb|ABE50544.1| methyltransferase [Methylobacillus flagellatus KT] Length = 321 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 173/320 (54%), Gaps = 11/320 (3%) Query: 9 MSSAIHH----TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 MS+ I H + HV VLLE+ + L+ P V +D TFG GG+SR + + Sbjct: 1 MSAGISHVPAAQVSQHVTVLLEEAVEALSIKPDGVYVDGTFGRGGHSRKILEKLGAQGRL 60 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 +ALDRD A+ Q + A +Q+ + + VDGV+ DLG+SS QID G Sbjct: 61 VALDRDLAAIQAAQGIQDARFKIVHSHFAAMAQVLASLNIQQVDGVLLDLGISSPQIDEG 120 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KR 179 +RGFSF+ GPLDMRM G +A++ + A ++LTR++ GEE+ A +IA AIV +R Sbjct: 121 ERGFSFRFDGPLDMRMDQSRGQTAAEFIATATEQELTRVIKEYGEERFAKQIARAIVAQR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L+ ++ V + + PATR+FQALRIF+N E+EEL+ L L Sbjct: 181 AGGMDISTTGQLAKIVAGAVPKVEPGQ-DPATRTFQALRIFINQELEELSLTLPQCLSLL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQE 298 G L V+SFHSLEDR+VK+F + H + + + + V P+++ Sbjct: 240 APQGRLAVISFHSLEDRIVKRFIRGEQDRDNLPAHFPVRASDLPQPRLVAIGRAVRPSED 299 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 +V N RSRSA LR RT Sbjct: 300 EVRRNPRSRSAVLRVAERTA 319 >gi|256841653|ref|ZP_05547159.1| MraW methylase [Parabacteroides sp. D13] gi|301310871|ref|ZP_07216800.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3] gi|256736547|gb|EEU49875.1| MraW methylase [Parabacteroides sp. D13] gi|300830934|gb|EFK61575.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3] Length = 305 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 166/307 (54%), Gaps = 17/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HVPV+L + + L+ P + +D TFG GG+SR K G + D+D A Sbjct: 8 YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSGGELYGFDQDADA----- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F+ ++ F L +++ VDG++ DLGVSS D DRGFSF+ G Sbjct: 63 EHNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 123 TLDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++ Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAK Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298 Query: 311 LRAGMRT 317 LR + Sbjct: 299 LRIAEKV 305 >gi|288904625|ref|YP_003429846.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus gallolyticus UCN34] gi|288731350|emb|CBI12901.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus gallolyticus UCN34] Length = 316 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P V +DAT G G+S ++ A D+D A+ Q Sbjct: 7 HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYAFDQDQTAIDNAQI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K Q + + F L + +DG+++DLGVSS Q+D +RGFS++K Sbjct: 67 RLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA DVVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQARKVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLALVNRKPILPSEEELEVNNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKV 314 >gi|52425730|ref|YP_088867.1| S-adenosyl-methyltransferase MraW [Mannheimia succiniciproducens MBEL55E] gi|115311583|sp|Q65RX8|RSMH_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52307782|gb|AAU38282.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 322 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 167/324 (51%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 MS + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MSEQNTFSSPEHITVLLHEAVDGLALKDKGIYIDGTFGRGGHSRLILSKLTENGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ +E +F + +FS + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAAAEEI---QDSRFHIEHNSFSAIPYICEKLGLVGKIDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA+ + Q +DL +L GEE+ A RIAHAIV Sbjct: 118 ERGFSFMKDGPLDMRMDTSKGLSAAQWLQQVTEEDLAWVLKTFGEERFAKRIAHAIVNYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA T+ L+ + K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVQNGTEPLTRTLPLAELIAQAVPFKDKHKHPATRSFQAIRIFINSELDELESVLHSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 L G L V+SFHSLEDR+VK F +S + + + + K + Sbjct: 238 LTVLAPEGRLSVISFHSLEDRMVKHFMRKQSKGESIPKGLPLREDQINRNRTLKVIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P + +V N RSRSA LR R Sbjct: 298 QPKESEVFANPRSRSAVLRVAERI 321 >gi|169348415|ref|ZP_02866353.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552] gi|169293884|gb|EDS76017.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552] Length = 309 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 162/309 (52%), Gaps = 8/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + DHV VLL + I LN + +D T G GG+S K ++ D+D A+ Sbjct: 1 MFDHVTVLLNEAIEGLNINEDGIYVDCTLGGGGHSCEILKRLTTGHLYCFDQDYTAIEAA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + + + +++ + F +++ + + VDG++FDLGVSS Q D G RGFS+ Sbjct: 61 KKRLSEISDNYTIIYSNFVNIKEKLEELNVHKVDGILFDLGVSSPQFDTGSRGFSYNYDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + A +VN + + L IL +EK A RIA I + R + P +TT + Sbjct: 121 RLDMRMDINNPLDAYYIVNNWSYEQLVEILFKYADEKFAKRIARKIEQARSNKPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALRI VN+E+ + L+ A L + G + V++ Sbjct: 181 LVEIIKEAIPAAARRKGGHPAKRTFQALRIAVNDELNVFDRALKDALDLLNSKGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLED++ K F + + H ++ I KK +V + E++ N R+ S Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPEHLLPKYKLINKKAIVASDEELEMNHRAHS 300 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 301 AKLRIIERV 309 >gi|314933355|ref|ZP_07840720.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87] gi|313653505|gb|EFS17262.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87] Length = 311 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++++ + + + F +L + + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKVVLKEHLHKVTFVHSNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ HPA R FQA+RI VN+E+ + A +++ G + V+ Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNINGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I + + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|254291793|ref|ZP_04962578.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422305|gb|EDN14267.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 316 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESLGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|306830125|ref|ZP_07463309.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249] gi|304427651|gb|EFM30747.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249] Length = 316 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLLEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|237654092|ref|YP_002890406.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T] gi|237625339|gb|ACR02029.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T] Length = 311 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 170/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + L +D TFG GG+SR+ + +IA DRDP A++ GQ Sbjct: 7 HVSVLLSEAVDALAIRADGFYVDGTFGRGGHSRAVLQRLGPQGRLIAFDRDPLAIAAGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +L + FS L D + + VDGV+ DLGVSS Q+D RG SF+ PL Sbjct: 66 --GVGDARLTLVHSAFSALDDELARLGVQAVDGVLLDLGVSSPQLDDAARGMSFRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G + ++ + +A+V +T ++ GEE+ A IA AI R TT L+ Sbjct: 124 DMRMDTSRGQTVAEWLAEASVGQITEVIREYGEERFAHAIAKAIANARAGGAVATTGQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K V + + HPATR+FQALRIF+N E+EEL++ L L+ GG L V+SFHS Sbjct: 184 ALVEKAVRTREPGQ-HPATRTFQALRIFINQELEELSRVLPVCVSRLRPGGRLAVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S + R + A + + K + P++ +VA N R+RSA L Sbjct: 243 LEDRIVKRFMRDESRPPVLPRRLPVRAADLPAPRLQLVGKAMRPSEAEVAANPRARSAVL 302 Query: 312 RAGMRTVER 320 R RT Sbjct: 303 RVAERTEAP 311 >gi|161612464|ref|YP_001586429.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|204927221|ref|ZP_03218423.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|262826399|sp|A9MZL1|RSMH_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161361828|gb|ABX65596.1| hypothetical protein SPAB_00154 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|204323886|gb|EDZ09081.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322615941|gb|EFY12858.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620725|gb|EFY17585.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623923|gb|EFY20760.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627371|gb|EFY24162.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630678|gb|EFY27442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638102|gb|EFY34803.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640588|gb|EFY37239.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647729|gb|EFY44214.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648078|gb|EFY44545.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656890|gb|EFY53176.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657400|gb|EFY53672.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663719|gb|EFY59919.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666552|gb|EFY62730.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672289|gb|EFY68401.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676399|gb|EFY72470.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679508|gb|EFY75553.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686163|gb|EFY82147.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195007|gb|EFZ80193.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200084|gb|EFZ85171.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201095|gb|EFZ86164.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209492|gb|EFZ94425.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212256|gb|EFZ97080.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216561|gb|EGA01287.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323225810|gb|EGA10030.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228648|gb|EGA12777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236738|gb|EGA20814.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239761|gb|EGA23808.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242191|gb|EGA26220.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249385|gb|EGA33301.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252282|gb|EGA36133.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256628|gb|EGA40358.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262997|gb|EGA46547.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265482|gb|EGA48978.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271730|gb|EGA55148.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 313 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|307708181|ref|ZP_07644648.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261] gi|307615627|gb|EFN94833.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261] Length = 316 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|301300385|ref|ZP_07206587.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851987|gb|EFK79669.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius ACS-116-V-Col5a] Length = 314 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 166/309 (53%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P +D T G GG+S + + D+D A++ + Sbjct: 5 KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ E + + ++ F + + + + + DG+++DLGVSS Q D DRGFS+ Sbjct: 65 DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + ++ HPA ++FQA+RI VN+E+ L + L A L GG + V+ Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F ++ + ++ ++ IT+K +VP+++++ N R+ Sbjct: 245 TFQSLEDRLVKVMFKQKTNLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRIIEK 313 >gi|163790543|ref|ZP_02184972.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7] gi|159874146|gb|EDP68221.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7] Length = 318 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 169/312 (54%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +H VLL + + L+ +P + +D T G G+S ++ A D+D A+ Sbjct: 2 TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLNEKGHLYAFDQDDRALE 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +Y K + +A F ++D + + K VDG+++DLGVSS Q+D +RGFS+ Sbjct: 62 NAKIRLAEYVEKGMVTFIKANFRYIKDELANLGIKEVDGILYDLGVSSPQLDEAERGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM ++A +V+N+ + DL RI GEEK + +IA I R+ + Sbjct: 122 HQDAPLDMRMDTDAPLTAKEVINEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKLIE 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L LI+ + + HPA R FQA+RI VN+E+ + L A + L GG + Sbjct: 182 TTSELVELIKAGIPAPARRKGGHPAKRVFQAVRIAVNDELSSVEDSLEQAIELLAIGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK F S R + + + IT+K ++P+++++ N Sbjct: 242 SVISFHSLEDRIVKSIFKDHSKGPELPRGLPVVPDGFLPELKLITRKPILPSEQELEVNN 301 Query: 305 RSRSAKLRAGMR 316 RSRSAKLR + Sbjct: 302 RSRSAKLRIAEK 313 >gi|322386906|ref|ZP_08060530.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus cristatus ATCC 51100] gi|321269188|gb|EFX52124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus cristatus ATCC 51100] Length = 316 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I L+ + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETIDQLDVRSDGIYVDATLGGAGHSEYLLSKLGDKGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIERGMVTFIKDNFRNLKTRLNEVGVEKIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A VVNQ DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEAALTAYQVVNQYPYNDLVRIFFKYGEDKFSKQIARKIEQAREIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L GG + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVGGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLQPKLELVSRKPILPSKEELEANNRAHSA 306 Query: 310 KLRAGMRTVE 319 KLR + E Sbjct: 307 KLRVARKVHE 316 >gi|323171245|gb|EFZ56893.1| S-adenosyl-methyltransferase MraW [Escherichia coli LT-68] Length = 313 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 175/315 (55%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + Q ++P +E++A N Sbjct: 239 ISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEMAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|253997377|ref|YP_003049441.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8] gi|253984056|gb|ACT48914.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8] Length = 360 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 168/315 (53%), Gaps = 15/315 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + H+ VLL + + L+ P + +D TFG GG+SR +IA DRD A Sbjct: 49 SSAVHAHITVLLNEAVRALDIKPNGIYVDGTFGRGGHSRKILAQLGDAGRLIAFDRDLAA 108 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + G+ +F+L + F+ ++ + + + VDG++ DLG+SS QID +RGFSF Sbjct: 109 IEAGKAI---DDPRFTLVHSHFADMRKRLAELGVQHVDGILLDLGISSPQIDEAERGFSF 165 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPF 185 + PLDMRM SG +A+D + + + L ++ GEE+ A IA I +R Sbjct: 166 RYDAPLDMRMDQSSGETAADFLGRTTEQQLAEVIKNYGEERFAKSIARAIIAERNDGRAI 225 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ ++ V + + +PATR+FQALRIFVN E+EEL+ + + L G L Sbjct: 226 TTTGQLAQIVAGAVTRFEPGQ-NPATRTFQALRIFVNQELEELSLTMPQCLELLAPHGRL 284 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFN 303 ++SFHSLEDR+VK+F + + + ++ +S+ K V P+ E+V N Sbjct: 285 AIISFHSLEDRMVKQFIRGQEDRDDLPANFPVRAADLPQPRLKSV-GKAVKPSDEEVRSN 343 Query: 304 RRSRSAKLRAGMRTV 318 RSRSA LR RT Sbjct: 344 PRSRSAVLRVAERTS 358 >gi|227891048|ref|ZP_04008853.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867137|gb|EEJ74558.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 323 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 166/309 (53%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P +D T G GG+S + + D+D A++ + Sbjct: 14 KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 73 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ E + + ++ F + + + + + DG+++DLGVSS Q D DRGFS+ Sbjct: 74 DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 133 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 134 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 193 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + ++ HPA ++FQA+RI VN+E+ L + L A L GG + V+ Sbjct: 194 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 253 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S + + ++ ++ IT+K +VP+++++ N R+ Sbjct: 254 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 313 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 314 SAKLRIIEK 322 >gi|30248986|ref|NP_841056.1| methyltransferase family protein [Nitrosomonas europaea ATCC 19718] gi|42559461|sp|Q82VT1|RSMH_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|30138603|emb|CAD84894.1| Methyltransferase family [Nitrosomonas europaea ATCC 19718] Length = 317 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 18/314 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVPVLLE+ LN + +DATFG GG+SR +IA D+DP A+S + Sbjct: 1 MHVPVLLEEAADALNIRADGIYVDATFGRGGHSRLILSRLGESGRLIAFDKDPAAISAAR 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E+F +++Q++ + +DG++ DLGVSS+Q+D RGFSF+ GP Sbjct: 61 SI---RDERFQAVHGSYAQIRTALESLSVSRIDGILLDLGVSSIQLDEASRGFSFRHDGP 117 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + +L ++ GEE+ A +IA AIV + P TT L Sbjct: 118 LDMRMDSSRGKTAAEWLATVTETELKEVIRTYGEERYAGQIAGAIVMAQTRQPIVTTFQL 177 Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ V + ++ R HPATR+FQA+RI +N E+EEL+ L + L A G L+V+S Sbjct: 178 AEIVAAVVRKFGHRDGRQHPATRTFQAIRIHLNQELEELSVTLPQCVELLNANGRLVVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK+F ++G R + + Q I KK + P + +VA N Sbjct: 238 FHSLEDRIVKRFMRMQAGTDTLPRKLPVRDEESRMHSRQTLQIIGKK-IRPGENEVAANP 296 Query: 305 RSRSAKLRAGMRTV 318 R+RSA +R + Sbjct: 297 RARSAVMRVAEKLE 310 >gi|306832860|ref|ZP_07465994.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338] gi|304424999|gb|EFM28131.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338] Length = 338 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 105/321 (32%), Positives = 166/321 (51%), Gaps = 15/321 (4%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIA 63 K M++ H H+ VLL + + +L+ P + +DAT G G+S ++ A Sbjct: 21 KGMTTDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPTGHLYA 75 Query: 64 LDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQI 118 D+D A+ Q ++DY K Q + + F L +DG+++DLGVSS Q+ Sbjct: 76 FDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLVSNLAMHGVTEIDGILYDLGVSSPQL 135 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFS++K LDMRM+ SA DVVN + DL RI GE+K + +IA I Sbjct: 136 DERERGFSYKKDASLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIE 195 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 196 QARTVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAI 255 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L G + V++FHSLEDRL K+ F S + + +K ++P+ Sbjct: 256 ELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLTLVNRKPILPS 315 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 +E++ N RS SAKLR + Sbjct: 316 EEELEVNNRSHSAKLRVARKV 336 >gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans OCh 114] gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans OCh 114] Length = 330 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 145/327 (44%), Positives = 195/327 (59%), Gaps = 7/327 (2%) Query: 9 MSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66 MS+A T H+PVLL ++ + P V LD TFGAGGY+R + G+ VIA+DR Sbjct: 1 MSAAATADTTSPHIPVLLPAILDAVAPVQ-GVWLDGTFGAGGYTRGLLEAGADRVIAVDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + Y + FS++ Y +DGVV DLGVSSMQ+D +RGFS Sbjct: 60 DPLAFEMAADWAGSYGTRLVQQPGVFSEMDTY--AVALDGVVLDLGVSSMQLDLAERGFS 117 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F + GPLDMRMS G SA+D+VN+A+ + L IL GEE+ + RIA AI+ R AP Sbjct: 118 FMRDGPLDMRMSQEGPSAADIVNEASAETLANILFQYGEERASRRIAKAILTERALAPIT 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+ +I++ + +K + HPATRSFQALRI VN+E EL QGL +AE+ALK GG L Sbjct: 178 TTLHLAGIIERCLPRAKPGQSHPATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLA 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 VV+FHS+EDR+VK+F +R+G F ++K +V +VA N R Sbjct: 238 VVTFHSVEDRMVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADDAEVAANPR 297 Query: 306 SRSAKLRAGMRTVERS-IEDDSFVHLP 331 +RSAKLR +RT + + D V +P Sbjct: 298 ARSAKLRIAVRTQAPAGVIDAKSVGMP 324 >gi|332976270|gb|EGK13132.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Desmospora sp. 8437] Length = 317 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H V+ E+ + L PG + +D T G G+S + +I LD+D A+ Sbjct: 1 MFRHETVMREEAVDGLLVRPGGIYVDCTLGGAGHSLLIAERLGKDGILIGLDQDDRALQA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ Q L ++ F +L++ + VDGV+FD+GVSS Q+D G+RGFS+Q Sbjct: 61 ASDRLKGADCQVHLIKSNFRRLEEVLGRLGLDRVDGVLFDIGVSSPQLDEGERGFSYQHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +A DVVN + +++ IL GEEK + RIA IV+ R P +TT Sbjct: 121 APLDMRMDPDGELTARDVVNDWSEEEIAHILFRYGEEKFSRRIARKIVETRSQYPIETTG 180 Query: 190 DLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I++ + + HPA RSFQA+RI VN+E+ +GL A ++L +GG + V+ Sbjct: 181 ELAAVIKEGIPAPARRKGPHPARRSFQAIRIAVNDELNAFEEGLEQAVRSLNSGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+FF ++ + + + ITKK + P+ + N R+R Sbjct: 241 TFHSLEDRICKRFFQEKARGCICPPDFPVCTCGKTPELRIITKKSLQPSAAETGRNPRAR 300 Query: 308 SAKLRAGMRTVE 319 SA+LR + E Sbjct: 301 SARLRIAEKCEE 312 >gi|325205481|gb|ADZ00934.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M04-240196] Length = 328 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 15/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ + + + + P + + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAE 294 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 +A N R+RSA LR RT E Sbjct: 295 IAANPRARSAVLRVAERTAGPIPE 318 >gi|146310292|ref|YP_001175366.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638] gi|263447009|sp|A4W6I5|RSMH_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145317168|gb|ABP59315.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638] Length = 313 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 17/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTSVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---DDPRFSFVHGPFSALADYVSERDLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ ++ GEE+ RIA IV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLLTAEEADIAWVIKTFGEERFGKRIARGIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L + Sbjct: 180 TKELAEVVTAAT-PVKDKFKHPATRTFQAVRIWVNSELEEIELALKSSLGVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F +S + + + K ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEDQLRKLGGRYLRVLGK-MMPGEEEVAEN 297 Query: 304 RRSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 298 PRARSSVLRIAERTNA 313 >gi|283835144|ref|ZP_06354885.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220] gi|291069444|gb|EFE07553.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220] Length = 313 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAKTI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVI-AAAMPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGKMMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|90962030|ref|YP_535946.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius UCC118] gi|122448863|sp|Q1WT95|RSMH_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|90821224|gb|ABD99863.1| S-adenosyl-methyltransferase [Lactobacillus salivarius UCC118] gi|300214731|gb|ADJ79147.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus salivarius CECT 5713] Length = 314 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P +D T G GG+S + + D+D A++ + Sbjct: 5 KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + E + + ++ F + + + + + DG+++DLGVSS Q D DRGFS+ Sbjct: 65 DKFEEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + ++ HPA ++FQA+RI VN+E+ L + L A L GG + V+ Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S + + ++ ++ IT+K +VP+++++ N R+ Sbjct: 245 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRIIEK 313 >gi|222151001|ref|YP_002560154.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus JCSC5402] gi|263456379|sp|B9EB47|RSMH_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222120123|dbj|BAH17458.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus JCSC5402] Length = 310 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + HV VLLE+ + LN P + +D T G G+S K ++I++D+D A+ Sbjct: 1 MFHHVTVLLEETVDQLNIDPNGIYVDCTLGGAGHSLYLVKQLQEGHLISIDQDQTAIDNA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY ++ + + F L D + + VDG+++DLGVSS Q+D G+RGFS+ + Sbjct: 61 HIILKDYLDKVTFVKDNFRNLSDILAHLDIQKVDGILYDLGVSSPQLDVGERGFSYHQEA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA +VVN + L I GEEK + +IA I R+ P +TT + Sbjct: 121 KLDMRMDQTQTLSAYEVVNTWPYEKLVSIFFRYGEEKFSKQIARKIEAERELKPIETTTE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + A ++K GG + V++ Sbjct: 181 LVEIIKAAIPAPARRTGGHPAKRVFQAIRIAVNDELGAFESSIEQAIDSVKPGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S R + + + IT+K + + E++ N R+RS Sbjct: 241 FHSLEDRLCKQVFQEYSKGPDIPRGLPVVPPEYQPKLKKITRKPITSSNEELEHNNRARS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVVE 307 >gi|167630120|ref|YP_001680619.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum Ice1] gi|263456105|sp|B0TGB2|RSMH_HELMI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167592860|gb|ABZ84608.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum Ice1] Length = 313 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 179/312 (57%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + H+PVLL +V+ +L P P V LD T G GG+S + + VI LD+DP A++ Sbjct: 1 MVFHHIPVLLHQVLEVLKPRPEGVYLDGTVGGGGHSAAILQKLSGRGRVIGLDQDPAALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + ++ +L ++ F + V + +DG++ D+GVSS Q+D +RGF+++ Sbjct: 61 AAGRKLASFGDRVTLVRSNFRHIGAVVAELGLTGKIDGILLDIGVSSHQLDEAERGFTYR 120 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 PLDMRM+ +AS ++N+A ++ RIL GEE+ A RIA IVKRR P + Sbjct: 121 MDAPLDMRMNPESALTASKLLNEAPEGEIARILRDYGEERWAKRIAQFIVKRRALQPLER 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + + + ++ HPA R+FQALRI VN+E+ L + L +A +AL GG L Sbjct: 181 TGELVDIIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALEEALPAALEALAPGGRLA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK FFA ++ + + + + ITKK +V + E++ N R Sbjct: 241 VISFHSLEDRIVKSFFAEQARGCLCPPDFPVCACGNRPKVKIITKKPLVGSDEEMRANPR 300 Query: 306 SRSAKLRAGMRT 317 ++SAKLRA + Sbjct: 301 AQSAKLRAAEKI 312 >gi|313884959|ref|ZP_07818711.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola ACS-139-V-Col8] gi|312619650|gb|EFR31087.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola ACS-139-V-Col8] Length = 318 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 179/312 (57%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + I L+ P + +D T G G++ + ++ A D+D A+ Sbjct: 2 ENFKHTSVLLHETIDQLDINPNGIYVDCTLGGAGHAAYLLSLLSPKGHLYAFDQDMNAIK 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127 Q+ + DY K+Q + A F+QL++ + ++GV + +DLGVSS Q+D +RGFS+ Sbjct: 62 NAQDRLHDYIEKDQVTFIHANFAQLKEQLAERGVSYVDGIYYDLGVSSPQLDQAERGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 +K PLDMRM+ +A ++VN+ + + +I+ GEE+ A RI AI + R++ P + Sbjct: 122 KKEAPLDMRMNQEDKLTAYEIVNEWPYEKIVKIIDHYGEERFAKRITRAIEQARKNKPIE 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ ++++ + ++ + HPA R+FQA+RI VN+E+ + L A LK GG + Sbjct: 182 TTLELAEIVKEAIPAATRRSGGHPAKRTFQAIRIAVNDELNVIETSLNQAFTLLKVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+ F +S + ++ A F + +K ++ +QE++ N Sbjct: 242 SVISFHSLEDRIVKQLFRDKSSRPDLPPNLPILPERTEADFALVNRKPILASQEELDENN 301 Query: 305 RSRSAKLRAGMR 316 RSRSAKLR R Sbjct: 302 RSRSAKLRVIQR 313 >gi|148994362|ref|ZP_01823605.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP9-BS68] gi|147927293|gb|EDK78326.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP9-BS68] Length = 316 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQVRLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARDVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQSMDMLTLDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|306830621|ref|ZP_07463786.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427129|gb|EFM30236.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 324 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 106/321 (33%), Positives = 169/321 (52%), Gaps = 15/321 (4%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIA 63 K M++ H H+ VLL + + +L+ P V +DAT G G+S ++ A Sbjct: 7 KGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGTTGHLYA 61 Query: 64 LDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 D+D A+ Q ++DY K Q + + F L + +DG+++DLGVSS Q+ Sbjct: 62 FDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQL 121 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFS++K PLDMRM+ SA +VVN + DL RI GE+K + +IA I Sbjct: 122 DERERGFSYKKDAPLDMRMNRDQDLSAYNVVNTYDYHDLVRIFFKYGEDKFSKQIARKIE 181 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 182 QARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAI 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L G + V++FHSLEDRL K+ F S + + +K ++P+ Sbjct: 242 ELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLALVNRKPILPS 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 +E++ N RS SAKLR + Sbjct: 302 EEELEVNNRSHSAKLRVARKV 322 >gi|325977602|ref|YP_004287318.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177530|emb|CBZ47574.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 324 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 107/321 (33%), Positives = 169/321 (52%), Gaps = 15/321 (4%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIA 63 K M++ H H+ VLL + + +L+ P V +DAT G G+S ++ A Sbjct: 7 KGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYA 61 Query: 64 LDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 D+D A+ Q ++DY K Q + + F L + +DG+++DLGVSS Q+ Sbjct: 62 FDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQL 121 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFS++K PLDMRM+ SA DVVN + DL RI GE+K + +IA I Sbjct: 122 DERERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIE 181 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 182 QARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAI 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L G + V++FHSLEDRL K+ F S + + +K ++P+ Sbjct: 242 ELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKLALVNRKPILPS 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 +E++ N RS SAKLR + Sbjct: 302 EEELEVNNRSHSAKLRVARKV 322 >gi|332203501|gb|EGJ17568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA47368] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ QE Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQE 66 Query: 77 TMR--DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLALYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|183599909|ref|ZP_02961402.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827] gi|188022184|gb|EDU60224.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 118/318 (37%), Positives = 164/318 (51%), Gaps = 16/318 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLNEQGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A+ QE +F + FS + +YV ++ +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQEI---DDPRFMIKHGPFSAIAEYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA + A D+ +L GEE+ A RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMNAQADDIAWVLKTFGEERFAKRIAKAIVERNHNPE 177 Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T + + V K HPATRSFQA+RI++N+E+EE+ Q L A L Sbjct: 178 ETPLTRTRELAELIAKVSPIKERHKHPATRSFQAIRIYINSELEEIEQALEGAVSVLAPE 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQED 299 G L V+SFHSLEDRLVK+F S + + A + + P+ + Sbjct: 238 GRLSVISFHSLEDRLVKRFIRQNSKGPSVPAGIPLTEAQIRELGVAKLREVGKMKPSDAE 297 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N R+RS+ LR RT Sbjct: 298 IDENPRARSSVLRFAQRT 315 >gi|319424760|gb|ADV52834.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens 200] Length = 313 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 169/314 (53%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV D +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--SDDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK A IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIVR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK+F S + + + + K ++P+ E++ Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|119944895|ref|YP_942575.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37] gi|262825199|sp|A1SU11|RSMH_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119863499|gb|ABM02976.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37] Length = 315 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 124/317 (39%), Positives = 182/317 (57%), Gaps = 12/317 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + L + +D TFG GG+SR +IA+DRDP A+ Sbjct: 1 MAKHTTVLLDEAVNGLGLKTDGIYVDGTFGRGGHSRHILGQLGAQGRLIAIDRDPRAIET 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ M++ +F++ FS L +Y+ + +DGV+ DLGVSS QID DRGFSF + Sbjct: 61 GEALMKE-DPRFTIIHGPFSGLAEYIKELGLAGQIDGVLLDLGVSSPQIDDADRGFSFMR 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + GISA+ + +A+V D+ +L GEEK A RIA AIV R PF T Sbjct: 120 DGPLDMRMDPTSGISAAQWLAKADVDDIGWVLKTFGEEKFAFRIARAIVADRTETPFLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI++ + + + HPATRSFQA+RI+VN+E+EE+ + L A + L GG L V+ Sbjct: 180 LQLAQLIER-LCPKREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALEILAIGGQLSVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + + A +++ K + P+ E++ N R+ Sbjct: 239 SFHSLEDRIVKRFIRKQEKGREYPPGLPLTEAQMQHGKTLKSLAKALKPSAEEINENTRA 298 Query: 307 RSAKLRAGMRTVERSIE 323 RS+ LR + E E Sbjct: 299 RSSVLRVAQKIAEPESE 315 >gi|325128828|gb|EGC51687.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis N1568] Length = 328 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 169/323 (52%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + + +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVVSEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|237738334|ref|ZP_04568815.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC 9817] gi|229420214|gb|EEO35261.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC 9817] Length = 313 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL + I L V LD T G GG+S K ++I++D+D A+ + Sbjct: 8 YHIPVLYRECIDNLVINKDGVYLDCTLGGGGHSEGILKELSDKGHLISIDQDQQAIDFAK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y +++ +F+ F L + G D ++ D+GVSS Q+D +RGFS++ Sbjct: 68 KRLEKYGKKWQVFKNNFENLDMVLYMAGYDKVDGILMDIGVSSTQLDDPERGFSYRYDTR 127 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S SA +VVN+ + L +I+ GEE+ A +IA I + R +TT +L Sbjct: 128 LDMRMNRSNPLSAYEVVNEYPEEKLAKIIFEYGEERNARKIAKFICEARTEKNIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + + + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FH Sbjct: 188 VAIIKRA--YPERAQKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + I A + IT+K +VP E+V FN R+ S+K Sbjct: 246 SLEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITRKPIVPEGEEVEFNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRVVERI 312 >gi|225860373|ref|YP_002741882.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Taiwan19F-14] gi|303255210|ref|ZP_07341284.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455] gi|262825688|sp|C1CPL0|RSMH_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225727237|gb|ACO23088.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Taiwan19F-14] gi|302597843|gb|EFL64915.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + + +K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVARKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|258620868|ref|ZP_05715902.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573] gi|258586256|gb|EEW10971.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTAS-----FQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQNI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|168333718|ref|ZP_02691971.1| S-adenosyl-methyltransferase MraW [Epulopiscium sp. 'N.t. morphotype B'] Length = 311 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H+ VLL + I LN + +D T G G++ C+ ++ +D+D A++ Sbjct: 1 MEFNHISVLLNECIEGLNIKTNGIYVDGTLGGAGHATEICRHLNSEGTLVGIDQDAIAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + + + F+ + + + +DG++ DLGVSS Q+D +RGFS+ + Sbjct: 61 TAEARLAEAANRVLVIKXNFANVDAVLEELEIDKIDGMLLDLGVSSYQLDEAERGFSYMR 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM+ SA DVVN +L ++ GEEK A RIA IV+ R S+ TT Sbjct: 121 DAKLDMRMNQDAKFSAFDVVNSYTEDELAVVIKNFGEEKWARRIAKFIVEARASSSIDTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA R+FQA+RI VN EI+ +A ++ L GG L + Sbjct: 181 YELVEIIKKAIPKAARLEGGHPAKRTFQAIRIEVNKEIDIIAPAIKEIVAHLNVGGRLAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + ITKK ++P+++++ N RS Sbjct: 241 ITFHSLEDRIVKHTFRELENPCTCPSNFPICVCNKKSQVKVITKKPILPSEQELENNSRS 300 Query: 307 RSAKLRAGMRT 317 +SAKLR + Sbjct: 301 KSAKLRIVEKI 311 >gi|114327101|ref|YP_744258.1| S-adenosyl-methyltransferase MraW [Granulibacter bethesdensis CGDNIH1] gi|122327917|sp|Q0BV17|RSMH_GRABC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114315275|gb|ABI61335.1| S-adenosyl-methyltransferase mraW [Granulibacter bethesdensis CGDNIH1] Length = 334 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 139/310 (44%), Positives = 188/310 (60%), Gaps = 9/310 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 H + G HVPVLL +V+ L+PAPG V LD TFG GGY+R+ S V A+DRDP A+ Sbjct: 18 HSSTGTHVPVLLNEVLETLSPAPGGVFLDGTFGGGGYTRAILDTAEDSTVWAVDRDPAAI 77 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128 + G+ Y+ + L Q FSQ+ + D+GV+ +V D+GVSS QID DRGFSF+ Sbjct: 78 TRGEALAARYRGRLHLIQGNFSQMASLLTDRGVNALDGIVLDIGVSSFQIDDPDRGFSFR 137 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G SA+D++ + ++ IL LGEE+++ +IA AIV R P TT Sbjct: 138 TDGPLDMRMAGEGTSAADLIARLPEAEIANILYELGEERKSRQIARAIVSARAEEPITTT 197 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+S+I+ V + + I PATRSFQALRI VN+E+ EL + L+ A L+ GG L++V Sbjct: 198 GRLASIIRCVVPPDR-SGIDPATRSFQALRIAVNDELGELERALQQATNLLQPGGRLVIV 256 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+F +G + P F+ IT K V P + N R Sbjct: 257 SFHSLEDRIVKRFMNDAAGNAPSPSRYDPRGLVARTEPRFRLITSKAVRPGTAEQNANPR 316 Query: 306 SRSAKLRAGM 315 SRSA+LRA Sbjct: 317 SRSARLRAIE 326 >gi|325134878|gb|EGC57511.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M13399] Length = 328 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|223933600|ref|ZP_03625580.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591] gi|253752421|ref|YP_003025562.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84] gi|253754247|ref|YP_003027388.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7] gi|253756181|ref|YP_003029321.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407] gi|302024366|ref|ZP_07249577.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05HAS68] gi|330833363|ref|YP_004402188.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3] gi|262827260|sp|C6GW75|RSMH_STRS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827309|sp|C5VZR6|RSMH_STRSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827338|sp|C6GPU1|RSMH_STRSX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831434|sp|A4VX71|RSMH_STRSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831441|sp|A4W3H4|RSMH_STRS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223897726|gb|EEF64107.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591] gi|251816710|emb|CAZ52352.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84] gi|251818645|emb|CAZ56480.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407] gi|251820493|emb|CAR47246.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7] gi|319758827|gb|ADV70769.1| S-adenosyl-methyltransferase MraW [Streptococcus suis JS14] gi|329307586|gb|AEB82002.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + +L+ P + +DAT G G+S G ++ A D+D A+ Sbjct: 6 NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 65 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y K Q + + F L+ + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 66 IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 125 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G +A DVVN + DL RI GE+K + +IA I + R P +TT Sbjct: 126 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 185 Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 186 ELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDRL K+ F S + + A + + +K ++P+QE++ N R+ S Sbjct: 246 TFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPILPSQEELEANNRAHS 305 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 306 AKLRVAKKV 314 >gi|319408832|emb|CBI82489.1| S-adenosyl-methyltransferase [Bartonella schoenbuchensis R1] Length = 356 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 166/331 (50%), Positives = 221/331 (66%), Gaps = 6/331 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G++VIALDRDP A+ GQ Sbjct: 24 ETESHIPVLLQPVLAALVPLAGAKVIDGTFGAGGYTRALLDAGADVIALDRDPHAIREGQ 83 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDM Sbjct: 84 LLVDQFFPRLRLVQMEFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDM 142 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM+ +G +ASDVVN V +L+ + +LGEE+ A RIA I KRR+ PF T DL++ I Sbjct: 143 RMAQTGFTASDVVNCLKVNELSHMFRVLGEERHAGRIARMIEKRRRIRPFLRTCDLANAI 202 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V +RIHPATR FQALRI+VN+E+ EL +GL +AEK LKAGG L VVSFHSLED Sbjct: 203 EVLVGRKPGDRIHPATRVFQALRIYVNDELGELTRGLLAAEKVLKAGGRLGVVSFHSLED 262 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VKKFF++RSG+ R++ + PA F + K V +E+V N R+RSAKLR G+ Sbjct: 263 RIVKKFFSARSGEGGRSRYLPEIKSSPATFLPLFKGVKTANEEEVQKNPRARSAKLRVGI 322 Query: 316 RTVE---RSIED--DSFVHLPRLPTLSQFRG 341 RT E R+ ED + + L L ++ F+G Sbjct: 323 RTQEDVIRTQEDVIKADMELFGLAEITSFKG 353 >gi|315652174|ref|ZP_07905171.1| exopolyphosphatase [Eubacterium saburreum DSM 3986] gi|315485569|gb|EFU75954.1| exopolyphosphatase [Eubacterium saburreum DSM 3986] Length = 311 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 +H VLL++VI LN P +D T G G++ K G +I +D+D A+ Sbjct: 1 MNFNHKSVLLDEVIESLNIKPDGYYVDGTLGGAGHALEVIKRLKGGRLIGIDQDADAIKA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + DYK + + + + ++D + VDG+ DLGVSS Q+D DRGF+++ Sbjct: 61 ATERLIDYKNRVIIVRDNYVNIEDILKREGIDKVDGIYVDLGVSSYQLDTADRGFTYRFD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ASD+VN + +L ++ GE++ A IA IV+ R +TT Sbjct: 121 APLDMRMDDRNELKASDIVNNYSEAELFHVIRDYGEDRFAKNIAKHIVEYRNKKKIETTF 180 Query: 190 DLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + HPA R+FQA+RI +N E+E L + + LK GG L V+ Sbjct: 181 ELVDIIKSAIPMKIQVTGGHPAKRTFQAIRIELNKELEVLKDSIDVMIELLKPGGRLSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+ F + + + + + IT+K V+P++E++ N R++ Sbjct: 241 TFHSLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAVLPSKEELEENSRAK 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVFEK 309 >gi|37527526|ref|NP_930870.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp. laumondii TTO1] gi|42559441|sp|Q7N139|RSMH_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|36786961|emb|CAE16035.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp. laumondii TTO1] Length = 314 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 171/320 (53%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MANSHFKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS+L Y +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIEVAKAI---TDPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV Q P Sbjct: 118 SFMRDGPLDMRMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T+ L+ LI + K HPAT+SFQA+RI++N+E+EE+ Q L A + L G Sbjct: 178 ITRTKALADLIAQA-SPIKEKHKHPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + +SI K + P++E+ Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGK--MKPSEEE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR + E Sbjct: 295 VADNPRARSSVLRFAEKVSE 314 >gi|332362961|gb|EGJ40750.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK49] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+C +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNCDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|325288822|ref|YP_004265003.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus glycolicus DSM 8271] gi|324964223|gb|ADY55002.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus glycolicus DSM 8271] Length = 310 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 164/310 (52%), Gaps = 8/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H VLL++ + + +D TFG GG+SR + S +IA D+D A Sbjct: 1 MAFEHTSVLLKETVDSVLTKADGTYVDCTFGGGGHSRLLLEKLSDQAKLIAFDQDEKAYL 60 Query: 73 CGQETMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + K F D V G++FDLGVSS Q+D +RGFS++ Sbjct: 61 NARCRFAGDKRVIFFRRNFVHMENTLDTEGLLPVTGIMFDLGVSSPQLDEAERGFSYRHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S SA+++VN + +LTRI+ GEEK ASRI+ IV+ R+ +TT Sbjct: 121 APLDMRMDRSAEFSAAELVNGWDEAELTRIIRAYGEEKWASRISKFIVEARKEQEIKTTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ V + HPA R+FQALRI VN E++ LA+ L A + L +GG L V+ Sbjct: 181 RLVEIIKAAVPAGARKEGPHPAKRTFQALRIAVNRELDVLAEALDQALRCLDSGGRLAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR VK+ G+ + + A + IT+K V+P+ E++ N RSR Sbjct: 241 TFHSLEDRTVKEKILEWLGRCTCPQGFPVCTCGARAQVKQITRKPVIPSNEEIENNPRSR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVVEKI 310 >gi|257467026|ref|ZP_05631337.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 313 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ + Sbjct: 8 YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + +Q+S+FQ F + VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 68 KRLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 127 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + A + +TKK ++P+++++ N R+ S+K Sbjct: 246 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 305 Query: 311 LRAGMRTV 318 LR R Sbjct: 306 LRVVERLA 313 >gi|120597213|ref|YP_961787.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1] gi|146291586|ref|YP_001182010.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32] gi|262826531|sp|A4Y2M8|RSMH_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826576|sp|A1REY8|RSMH_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120557306|gb|ABM23233.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1] gi|145563276|gb|ABP74211.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32] Length = 313 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV D +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--SDDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + A ++D+ + GEEK A IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK+F S + + + + K ++P+ E++ Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|15676324|ref|NP_273460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis MC58] gi|20139199|sp|Q9K0Z0|RSMH_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|7225634|gb|AAF40850.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325140926|gb|EGC63433.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis CU385] Length = 328 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + RIA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|121635455|ref|YP_975700.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis FAM18] gi|262825519|sp|A1KVM4|RSMH_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120867161|emb|CAM10928.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|325132957|gb|EGC55634.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M6190] gi|325138945|gb|EGC61495.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ES14902] gi|325144950|gb|EGC67233.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240013] Length = 328 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|34499806|ref|NP_904021.1| S-adenosyl-methyltransferase MraW [Chromobacterium violaceum ATCC 12472] gi|42559445|sp|Q7NPZ1|RSMH_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34105656|gb|AAQ62010.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 320 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 171/322 (53%), Gaps = 10/322 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL + + L P V +D TFG GG+SR +IA D+DP Sbjct: 1 MSTPTFVHRTVLLTEAVDALAIRPDGVYVDCTFGRGGHSRLILSKLGPSGRLIAFDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + + +F++ F L + GVDGV+ DLGVSS QID G RGFS Sbjct: 61 AIAVA-DRLAAEDSRFNIVHNGFETLSAELARLGVAGVDGVLMDLGVSSPQIDDGSRGFS 119 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G++A++ + A+ D+ ++ GEE+ A +IA AIV +R +P Sbjct: 120 FRFDAPLDMRMDTTRGVTAAEWLATADEADIREVIKTYGEERFARKIAAAIVAQRDESPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT++L+ L+ + V + + PATR+FQA+RIFVN E++EL L A + L GG L Sbjct: 180 TTTRELAVLVGQNVRTREPGQ-DPATRTFQAIRIFVNRELDELKAVLPQAARLLNEGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK + S + M+ + + K + E+V N Sbjct: 239 AVISFHSLEDRIVKLYLRDVSSEEKLPAWAMVRAADMAQPPIDLVGKAIRAGDEEVRENP 298 Query: 305 RSRSAKLRAGMRTVERSIEDDS 326 R+RSA +R RT E D+ Sbjct: 299 RARSAIMRVAQRTAAPWREGDA 320 >gi|169832477|ref|YP_001693854.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Hungary19A-6] gi|262826832|sp|B1I953|RSMH_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168994979|gb|ACA35591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Hungary19A-6] Length = 316 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQEREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQ++RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQSIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|58337113|ref|YP_193698.1| S-adenosyl-methyltransferase MraW [Lactobacillus acidophilus NCFM] gi|227903687|ref|ZP_04021492.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|68565411|sp|Q5FKV7|RSMH_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58254430|gb|AAV42667.1| cell division protein [Lactobacillus acidophilus NCFM] gi|227868574|gb|EEJ75995.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 315 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 160/314 (50%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS- 72 H VLL + I L P + +DATFG GG+++ +I D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNDGLYVDATFGGGGHAKYLLSKIDTGTLIGFDQDEYAIKS 60 Query: 73 ----CGQETMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 D + + L FS L++ G+DG+ +DLGVSS Q D DRG Sbjct: 61 AELNFANLLKPDSEPKLQLVHDNFSNLEENLVKLGYTDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM+ A +VN + K+L IL G+EK + +IAH IV++R+ Sbjct: 121 FSYRYNARLDMRMNQDQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHKIVEKRKEK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I+ + + HPA +SFQALR+ VN+E++ L L A K L+ G Sbjct: 181 PIVTTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + + +K +V + ++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFIPDDMKPTLKLVNRKPIVASDSELEN 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|262831557|sp|A9M2I4|RSMH_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 328 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 171/323 (52%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|322377105|ref|ZP_08051597.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334] gi|321281818|gb|EFX58826.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334] Length = 316 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLEVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|15601999|ref|NP_245071.1| S-adenosyl-methyltransferase MraW [Pasteurella multocida subsp. multocida str. Pm70] gi|20139143|sp|Q9CPB4|RSMH_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12720349|gb|AAK02218.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 321 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 172/323 (53%), Gaps = 18/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ H + H+ VLL + +A L + +D TFG GG+SR +IA+D Sbjct: 1 MNDKDHFSSPAHITVLLNEAVAGLALKEKGIYIDGTFGRGGHSRLILSRLADNGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + VDG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAKTI---QDPRFHIEHRSFSDIPRICERLNLVGKVDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SAS+ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSEQDLAWVLKTFGEERFAKRIAQAIVNYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + A T+ LS +Q K+ HPATRSFQA+RIF+N E++EL L+SA Sbjct: 178 KQALQHGTEPLSRTLQLAELIANAVPFKDKHKHPATRSFQAIRIFINAELDELESVLKSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVV 293 + L G L ++SFHSLEDR+VK F +S + + + Q + K + Sbjct: 238 VQVLAPQGRLAIISFHSLEDRMVKHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +PT+++ N RSRSA LR + Sbjct: 298 MPTEQEQQQNPRSRSAVLRVAEK 320 >gi|153854700|ref|ZP_01995950.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814] gi|149752804|gb|EDM62735.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814] Length = 311 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ C+ ++I +D+D A+ Sbjct: 4 EHKSVLLNETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIIGIDQDEAAIEAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 VRLKDFGEKVTIIRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA IV R + P +TT L Sbjct: 124 LDMRMDRRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAARGTNPIETTGQL 183 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ ++ + HPA R+FQA+RI +N E++ L L + L GG L +++F Sbjct: 184 TEIIRASIPMKYQKKSGHPAKRTFQAIRIELNRELDVLKNSLDDMIEILNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + +T+K ++P++E++ +N RS+SA Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPPDFPVCVCGKVSKGCVVTRKPILPSEEELEYNSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|146319398|ref|YP_001199110.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05ZYH33] gi|146321602|ref|YP_001201313.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 98HAH33] gi|145690204|gb|ABP90710.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus suis 05ZYH33] gi|145692408|gb|ABP92913.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus suis 98HAH33] gi|292559026|gb|ADE32027.1| methyltransferase [Streptococcus suis GZ1] Length = 323 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + +L+ P + +DAT G G+S G ++ A D+D A+ Sbjct: 13 NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 72 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y K Q + + F L+ + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 73 IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 132 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G +A DVVN + DL RI GE+K + +IA I + R P +TT Sbjct: 133 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 192 Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 193 ELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVI 252 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDRL K+ F S + + A + + +K ++P+QE++ N R+ S Sbjct: 253 TFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPILPSQEELEANNRAHS 312 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 313 AKLRVAKKV 321 >gi|332366385|gb|EGJ44136.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK355] Length = 316 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|320547904|ref|ZP_08042187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus equinus ATCC 9812] gi|320447444|gb|EFW88204.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus equinus ATCC 9812] Length = 319 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++ A D+D A+ Q Sbjct: 10 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPNGHLYAFDQDQTAIDNAQI 69 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K Q + + F L + +DG+++DLGVSS Q+D +RGFS++K Sbjct: 70 RLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 129 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A DVVN + DL RI GE+K + +IA I + RQ P +TT + Sbjct: 130 PLDMRMNREQDLTAYDVVNTYDYHDLVRIFYKYGEDKFSKQIARKIEQARQVKPIETTTE 189 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 190 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLVVDGRISVIT 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +K ++P+QE++ N RS SA Sbjct: 250 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLALVNRKPILPSQEELEANNRSHSA 309 Query: 310 KLRAGMRT 317 KLR + Sbjct: 310 KLRVARKV 317 >gi|320084363|emb|CBY94156.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 346 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 36 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 95 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 96 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 152 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 153 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 212 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 213 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 271 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + A + ++P +++VA N Sbjct: 272 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENP 331 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 332 RARSSVLRIAERTNA 346 >gi|197105793|ref|YP_002131170.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1] gi|262824815|sp|B4RFS8|RSMH_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|196479213|gb|ACG78741.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1] Length = 310 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 140/311 (45%), Positives = 193/311 (62%), Gaps = 5/311 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 HVPVL+++V+ L PAPG+ I+D TFGAGGY+R+ G++V+A DRDP + Sbjct: 1 MTTPHVPVLMQEVVDALAPAPGRTIIDGTFGAGGYTRAILATGASVVAFDRDPTVRRFAE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D +F L +A FS++ + + + DGV DLGVSSMQ+D +RGFSF + GPLDM Sbjct: 61 GLPAD---RFRLVEARFSEMDEVLGEGAADGVALDLGVSSMQLDQAERGFSFMQDGPLDM 117 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG +A+D+VN A +L RI + GEE+++ RIA AI +RR+ PF T +L+ I Sbjct: 118 RMGASGPTAADLVNTAEPAELARIFFVYGEERESRRIARAIARRREEQPFTRTLELADFI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +K + + +IHPATR+FQ LRI VN E+ EL GL +AE+ LK G L VV+FHSLED Sbjct: 178 EKALGGRRGAKIHPATRAFQGLRIAVNEELSELEAGLAAAERVLKPEGRLCVVTFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F + R+G+ A FQ + P++ +VA N R+RSAKLRA Sbjct: 238 RIVKSFLSVRAGRTPAGSRHAPPVRQGPAPSFQLLFNGARGPSETEVAANPRARSAKLRA 297 Query: 314 GMRTVERSIED 324 +RT D Sbjct: 298 AVRTDAPVWRD 308 >gi|259501653|ref|ZP_05744555.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners DSM 13335] gi|302191140|ref|ZP_07267394.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners AB-1] gi|259166938|gb|EEW51433.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners DSM 13335] Length = 315 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 1 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|150009093|ref|YP_001303836.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC 8503] gi|167011834|sp|A6LEV0|RSMH_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149937517|gb|ABR44214.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC 8503] Length = 305 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 17/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPV+L + + L+ P + +D TFG GG+SR K + + D+D A Sbjct: 8 YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA----- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F+ ++ F L +++ VDG++ DLGVSS D DRGFSF+ G Sbjct: 63 EHNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 123 TLDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++ Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAK Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298 Query: 311 LRAGMRT 317 LR + Sbjct: 299 LRIAEKV 305 >gi|283783869|ref|YP_003363734.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter rodentium ICC168] gi|282947323|emb|CBG86868.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter rodentium ICC168] Length = 313 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALAEYVAERNLTGRIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + + + ++P +++VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGRELRALGKLMPGEKEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|228474969|ref|ZP_04059697.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119] gi|314936659|ref|ZP_07844006.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp. hominis C80] gi|228270954|gb|EEK12342.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119] gi|313655278|gb|EFS19023.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp. hominis C80] Length = 311 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L++ I L+ + +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +RD+ + + F +L D + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A DVVN + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|323340611|ref|ZP_08080863.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus ruminis ATCC 25644] gi|323091734|gb|EFZ34354.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus ruminis ATCC 25644] Length = 316 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 167/312 (53%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +HV VLL + + LN P V +D T G GG+++ + + D+D A+ Sbjct: 2 TEFEHVTVLLNEAVEGLNIKPDGVYVDCTLGGGGHTKKILSELSEKGRLYSFDQDQTAID 61 Query: 73 CGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++ K + +L ++ F + + + VDG+V+DLGVSS Q D G+RGFS+ Sbjct: 62 YNEEQLKNEIEKGRLTLIKSNFRNIASELEKRDVLSVDGIVYDLGVSSPQFDVGERGFSY 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q LDMRM + +A +VN+ + DL RI GEEK A IA I K RQ+ + Sbjct: 122 QHDAVLDMRMDQTNDLTAETIVNEWSYNDLVRIFVRYGEEKFAKSIARRIEKDRQNERIK 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L LI++ + ++ HPA + FQA+RI VN+E+ L + L A L G + Sbjct: 182 TTGQLVELIKEGIPAKARRKGGHPAKKVFQAIRIAVNDELGVLEESLEEAFGLLSLHGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F + S + + F+ I KK ++PT+E++ N Sbjct: 242 SVITFQSLEDRLVKSMFREKTSLPELPPGLPVIPREMQPEFKLINKKPILPTEEELENNH 301 Query: 305 RSRSAKLRAGMR 316 R+ SAKLR + Sbjct: 302 RAHSAKLRIIEK 313 >gi|307126547|ref|YP_003878578.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B] gi|306483609|gb|ADM90478.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B] Length = 316 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|300715300|ref|YP_003740103.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661] gi|299061136|emb|CAX58243.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661] Length = 313 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 170/315 (53%), Gaps = 15/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN + LD TFG GG+SR + A+DRDP A+ Sbjct: 2 QDNFKHTTVLLDEAVNGLNIKSDGIYLDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F + FS L DY + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFQIIHGPFSALADYADELGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SAS + QA D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTKGQSASQWLLQAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL G L Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALTALAPEGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFN 303 V+SFHSLEDR+VK+F +S + + A A K ++P E+V N Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLAKLGGRHLKAFGKMMPGDEEVKEN 297 Query: 304 RRSRSAKLRAGMRTV 318 R+RS+ LR RT Sbjct: 298 PRARSSVLRVAERTA 312 >gi|260767165|ref|ZP_05876108.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972] gi|260617839|gb|EEX43015.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972] Length = 316 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 168/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ESFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + G+ SD + QA++ D+T ++ GE+K A RIA AIV R++ Sbjct: 120 KDGPLDMRMDPTSGMPVSDWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++ +V Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTQEQIRALGSADLKTVGKAIKPSEHEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 A N RSRS+ LR + Sbjct: 300 AMNPRSRSSVLRIAEK 315 >gi|332305217|ref|YP_004433068.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172546|gb|AEE21800.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica 4H-3-7+YE-5] Length = 311 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T H+ VLL++ + L+ P V LDATFG GG+S+ +IALDRDP A+ Sbjct: 3 TQTSHLSVLLQESLDGLSIKPDGVYLDATFGRGGHSKQILTQLSDKGRLIALDRDPSAIK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS+++D + + G++ DLGVSS Q+D +RGFSF Sbjct: 63 SAKAL--ANDPRFSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ G SA+ + A +D+ +++ GEEK RIAH IV RQ AP T Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQQAPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I V K+ HPATRSFQ +RI++N+E++E+ GL+SA +L +GG L V Sbjct: 181 TAQLAEIIDIAV-PVKDKFKHPATRSFQGIRIYINSELDEIRTGLKSALNSLNSGGRLSV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRR 305 +SFHSLEDRLVK+F +S + + + +++ K + P+ E+++ N R Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQSEIDSHKALKAIGKAIKPSSEELSRNVR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR + Sbjct: 300 ARSSVLRVAEK 310 >gi|257451725|ref|ZP_05617024.1| methyltransferase [Fusobacterium sp. 3_1_5R] Length = 313 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ + Sbjct: 8 YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y +Q+S+FQ F + VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 68 KRLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 127 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + A + +TKK ++P+++++ N R+ S+K Sbjct: 246 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 305 Query: 311 LRAGMRTV 318 LR R Sbjct: 306 LRVVERLA 313 >gi|315918163|ref|ZP_07914403.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans ATCC 25563] gi|313692038|gb|EFS28873.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans ATCC 25563] Length = 318 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ + Sbjct: 13 YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + +Q+S+FQ F + VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 73 KRLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 132 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + A + +TKK ++P+++++ N R+ S+K Sbjct: 251 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 310 Query: 311 LRAGMRTV 318 LR R Sbjct: 311 LRVVERLA 318 >gi|301155878|emb|CBW15347.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus parainfluenzae T3T1] Length = 320 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 170/320 (53%), Gaps = 18/320 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + +H+ VLL + + L + +D TFG GG+SR +IA+DRDP A Sbjct: 4 SFSAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAIDRDPRA 63 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFS 126 ++ ++ +F + +FS + D +DG++ DLGVSS Q+D DRGFS Sbjct: 64 IAEAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFS 120 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F K GPLDMRM G+SA++ + Q +V DLT +L GEE+ A RIA AIV+ +SA Sbjct: 121 FMKDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKSAVK 180 Query: 186 QTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T+ LS Q K+ HPATRSFQA+RI++N E++EL L SA L Sbjct: 181 NGTECLSRTSQLAELIAQAVPFKDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLA 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQE 298 G L ++SFHSLEDR+VK F +S R + Q I K + P++ Sbjct: 241 PEGRLSIISFHSLEDRMVKHFMRKQSKGEDIPRGLPLREDQIQRNQKLKIIGKAIQPSEA 300 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 +++ N RSRSA LR R Sbjct: 301 EISANPRSRSAVLRIAERVK 320 >gi|255015714|ref|ZP_05287840.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 2_1_7] Length = 305 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 17/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPV+L + + L+ P + +D TFG GG+SR K + + D+D A Sbjct: 8 YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA----- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F+ ++ F L +++ VDG++ DLGVSS D DRGFSF+ G Sbjct: 63 EHNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 123 ALDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++ Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAK Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298 Query: 311 LRAGMRT 317 LR + Sbjct: 299 LRIAEKV 305 >gi|218768820|ref|YP_002343332.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis Z2491] gi|20139195|sp|Q9JSY9|RSMH_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121052828|emb|CAM09176.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|308388613|gb|ADO30933.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis alpha710] gi|325130837|gb|EGC53570.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis OX99.30304] gi|325136978|gb|EGC59575.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M0579] gi|325208773|gb|ADZ04225.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis NZ-05/33] Length = 328 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 171/323 (52%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|125718671|ref|YP_001035804.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis SK36] gi|262827313|sp|A3CPZ9|RSMH_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125498588|gb|ABN45254.1| S-adenosyl-methyltransferase mraW, putative [Streptococcus sanguinis SK36] gi|324994098|gb|EGC26012.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK678] Length = 316 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|148988090|ref|ZP_01819553.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP6-BS73] gi|168494684|ref|ZP_02718827.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC3059-06] gi|147926554|gb|EDK77627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP6-BS73] gi|183575411|gb|EDT95939.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC3059-06] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLRPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|117924071|ref|YP_864688.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1] gi|263456390|sp|A0L5N9|RSMH_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117607827|gb|ABK43282.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1] Length = 313 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 169/315 (53%), Gaps = 14/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLL++ +A L P G LD TFG GG+SR + VI LDRD A++ Sbjct: 1 MSFQHTTVLLQETVAALAPQRGGCYLDGTFGGGGHSRLLLEQCAPTGRVIGLDRDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 GQ + + +L +A F+Q+ + + + DG + DLGVSS Q+D +RGFSF + Sbjct: 61 NGQALVAQMAGRLTLVKAPFAQVAEVLQQLEIAALDGAMLDLGVSSHQLDTAERGFSFIR 120 Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 SGPLDMRM +A+ ++N + L I GEE+ A RIA +VK RQ PF T Sbjct: 121 SGPLDMRMDGDSTTPTAAALLNTLDADALADIFFHYGEERHARRIARMVVKVRQQHPFTT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL+ I +RIHPATR FQ LRI VN E+++L Q L LK GG L V Sbjct: 181 TTDLAERI--AHMTPGYSRIHPATRVFQGLRIAVNEELQQLEQALSVLIGLLKPGGHLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAV--FQSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+ F + R + + A + + K + P++ ++ N Sbjct: 239 ISFHSLEDRIVKRLFRDAAKPPEDPVLRGLPIAQAQRPKATLKLVHNKPLTPSEAEIEQN 298 Query: 304 RRSRSAKLRAGMRTV 318 R+RSAKLR + Sbjct: 299 PRARSAKLRVAQKLA 313 >gi|325686943|gb|EGD28967.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK72] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A DVVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|332358033|gb|EGJ35866.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1056] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A DVVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGATDESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|261391925|emb|CAX49387.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 8013] Length = 328 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|332364602|gb|EGJ42371.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1059] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|291615182|ref|YP_003525339.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus ES-1] gi|291585294|gb|ADE12952.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus ES-1] Length = 308 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L + +D TFG GG+SR + ++ALD+DP AV+ +E Sbjct: 7 HATVLLNEAVEALRVKADGIYVDCTFGRGGHSRLILEKLGERGRLVALDKDPMAVAAARE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L + F L + + + VDGV+ DLGVSS Q+D RGFSF+ PL Sbjct: 67 I---GDARFQLQHSGFEHLGEVLRGLGIEKVDGVLLDLGVSSPQLDDESRGFSFRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A++ + A+ +L ++ GEE+ A +IA AIV RQ TT+ LS Sbjct: 124 DMRMDTSRGQTAAEWLATADEGELAEVIRDYGEERFARQIARAIVAARQERAILTTKQLS 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + +PATR+FQA+RI++N E+EEL L LKAGG + V+SFHS Sbjct: 184 DIVAQCVRTREPGK-NPATRTFQAVRIYINRELEELESVLPQCVDHLKAGGRMAVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + +++ + + K + + E+VA N R+RSA L Sbjct: 243 LEDRMVKHFMRDMAQGDKLPKNVPIRAVDVPQGKMRLAGKPIYASAEEVAANPRARSAVL 302 Query: 312 RAGMR 316 R R Sbjct: 303 RVAER 307 >gi|225574511|ref|ZP_03783121.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM 10507] gi|225038298|gb|EEG48544.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM 10507] Length = 336 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 9/313 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 ++ H VLLE+ I L P + +D T G G++ CK I +D+D A Sbjct: 21 NNMEFKHKSVLLEETIDGLRVKPDGIYVDGTLGGAGHAVEVCKKLSAKGRFIGIDQDQDA 80 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +RD+ ++ ++ ++ + + + + VDG++ DLGVSS Q+D +RGF++ Sbjct: 81 IIAANERLRDFGDRITIIRSNYCYAVKELRERGIQQVDGILLDLGVSSYQLDNPERGFTY 140 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM +A D+VN ++L RI+ GE+K A IA IV R P + Sbjct: 141 RVDAPLDMRMDQRASQTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVMERARKPIE 200 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +I++ + + HPA R+FQA+RI +N+E++ L L L G + Sbjct: 201 TTGELTEVIRRAIPMKMQAAGGHPAKRTFQAIRIELNHELDVLRDSLDEMVDILSDRGRI 260 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + IT+K ++P+++++ N Sbjct: 261 CIITFHSLEDRIVKTIFRKNENPCTCPSNFPVCVCGKKSKGKVITRKPILPSEDEMEENP 320 Query: 305 RSRSAKLRAGMRT 317 R++SAKLR RT Sbjct: 321 RAKSAKLRIFERT 333 >gi|90407776|ref|ZP_01215954.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3] gi|90311136|gb|EAS39243.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3] Length = 313 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 185/315 (58%), Gaps = 12/315 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H+ VLL++ + L + +DATFG GG+SR K +IA+DRDP A+ Sbjct: 1 MVEHITVLLDEAVNGLAIKEEGIYIDATFGRGGHSRHILKQLGPKGRLIAIDRDPRAIVT 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +FS+ FS L +YV + +DGV+ DLGVSS Q+D +RGFSF + Sbjct: 61 A-ELLMQEDARFSIIHGPFSDLANYVKELGLAGQIDGVLLDLGVSSPQLDEAERGFSFMR 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +GISA+ + +A+V+D++ +L GEEK A RIA AIV R+ PF T Sbjct: 120 DGPLDMRMDPTTGISAAQWLAKADVEDISWVLKTFGEEKFAYRIARAIVADREETPFLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL++LI + + + + HPATRSFQA+RI+VN+E+EE+ + L A L GLL V+ Sbjct: 180 LDLANLISR-LCPKREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALDILAIDGLLSVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + ++A + K + P+ ++ N+RS Sbjct: 239 SFHSLEDRIVKRFIRKQEKGREYPPGLPLTDAQMQSGKTMKAQGKALKPSAGEIEQNKRS 298 Query: 307 RSAKLRAGMRTVERS 321 RS+ LR +T + Sbjct: 299 RSSVLRVAKKTAQPE 313 >gi|326803777|ref|YP_004321595.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae ACS-120-V-Col10a] gi|326650961|gb|AEA01144.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae ACS-120-V-Col10a] Length = 318 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 17/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H H+ VLL++ + LN +D T G GG++ + A D Sbjct: 1 MTETFH-----HITVLLKETVDDLNVKEDGSYVDCTLGGGGHTSYLLSKLSAKGRLYAFD 55 Query: 66 RDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120 +D A++ +E D Q +L A F+QL++ + + VDG+++DLGVSS Q+D Sbjct: 56 QDIQAINHAKERFADAIAAGQLTLIHANFAQLEEQLAQRGVKQVDGILYDLGVSSPQLDD 115 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM S +A ++VN + DL RIL GEEK A IA I R Sbjct: 116 RERGFSYKQDAPLDMRMDQSQTLTAKEIVNDWSYVDLVRILKRYGEEKFAKAIARNIENR 175 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ A T +L +I++ + ++ HPA RSFQA+RI VN+E+ + L A + Sbjct: 176 RQKAAITRTSELVEIIKEAIPAPARRKGGHPAKRSFQAIRIAVNDELGAIESSLSQALQL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPT 296 +K G + +SF SLEDR+VK F S + S A F+ + KK + P+ Sbjct: 236 IKVEGRIAAISFQSLEDRIVKVMFKEASTVDNLPSQLPLLESQLPQAKFRLVNKKPIYPS 295 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 QE++ N R++SAKLR R E Sbjct: 296 QEELDKNSRAQSAKLRVIERVSE 318 >gi|309799924|ref|ZP_07694128.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302] gi|308116451|gb|EFO53923.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV V+L + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQLRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSKEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|260584184|ref|ZP_05851932.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC 700633] gi|260158810|gb|EEW93878.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC 700633] Length = 313 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 174/313 (55%), Gaps = 11/313 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + HV VLL + + L P + +D T G G+S ++ D+D A+ Sbjct: 1 MFKHVTVLLHETVDNLEVKPDGIYVDCTLGGAGHSEYLLGQLTTGHLYCFDQDMNAIDNA 60 Query: 75 QETMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++++ + + + A F +Q + + K VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 KIRLKNFIDEGKVTFIHANFRMIQKKLNELGIKKVDGILYDLGVSSPQLDQIERGFSYHQ 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + ++A +++N+ + +L RI GEEK + +IA I + RQ +TT Sbjct: 121 NAILDMRMDQTAPLTAKEIINEWSYDELVRIFYRYGEEKFSKQIARNIERIRQDHGIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ ++ ++ HPA R FQA+RI VN+E+ + L A L+ GG + V Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAVRIAVNDELAAVEDSLEQAFDLLEVGGRISV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK F +S +++ P A F+ IT+K ++PT+E++ N R Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEQGPKNLPILPGQLESANFKLITRKPILPTEEEMQENSR 300 Query: 306 SRSAKLRAGMRTV 318 S+SAKLR R Sbjct: 301 SQSAKLRVIERVK 313 >gi|325697683|gb|EGD39568.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK160] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062] gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062] Length = 346 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 156/329 (47%), Positives = 211/329 (64%), Gaps = 7/329 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL++V + PAPG VI+D TFGAGGYS +F + G++VI +DRDP A+ G+ Sbjct: 17 ARHIPVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGASVIGIDRDPDAIRDGRAL 76 Query: 78 MRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L F L+++ VDGVV DLGVSSMQ+D RGFSF+ GPLD Sbjct: 77 EQASDGRLKLVHGQFVDLEEHARALGHDAVDGVVMDLGVSSMQLDQAARGFSFRFDGPLD 136 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G SA+DVVN KDLTRI+G+LGEEK+AS ++HAI + R+ PF+TT +L+ + Sbjct: 137 MRMEQDGPSAADVVNTMERKDLTRIIGLLGEEKRASSVSHAICQAREEKPFETTLELARV 196 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+K V K IHPATR+FQALRI+VN E+ + A L +AE+ L+ GG L+VV+FHSL Sbjct: 197 IEKVVKRNPKKASIHPATRTFQALRIYVNGELHQAAGALAAAERILRPGGRLVVVTFHSL 256 Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+F A R + RHM + P F+ I K + E+V+ N R+RSA+LR Sbjct: 257 EDRIVKRFLADRCKTRGGGSRHMPEVDIPPPTFEFIVKGNQDASVEEVSENPRARSARLR 316 Query: 313 AGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AG R + D +H +P L+ F G Sbjct: 317 AGRRLDSPARPLD--IHEAGVPRLASFHG 343 >gi|254673389|emb|CBA08689.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha275] gi|319411060|emb|CBY91460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis WUE 2594] Length = 328 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 113/319 (35%), Positives = 173/319 (54%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL++ + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLDEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ + + + + P + + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAE 294 Query: 300 VAFNRRSRSAKLRAGMRTV 318 +A N R+RSA LR RT Sbjct: 295 IAANPRARSAVLRVAERTA 313 >gi|317058284|ref|ZP_07922769.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R] gi|313683960|gb|EFS20795.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R] Length = 318 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ + Sbjct: 13 YHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y +Q+S+FQ F + VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 73 KRLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 132 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + A + +TKK ++P+++++ N R+ S+K Sbjct: 251 SLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSK 310 Query: 311 LRAGMRTV 318 LR R Sbjct: 311 LRVVERLA 318 >gi|227529006|ref|ZP_03959055.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351018|gb|EEJ41309.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 11/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T HV VLL + +A LN P +DAT G GG+S + + + D+D A+ Sbjct: 2 TEFKHVTVLLNEAVAGLNIRPDGTYVDATLGGGGHSSAILNQLTTGRLYSFDQDQTAIRY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ ++ + + L + F L + VDG+V+DLGVSS Q D RGFS++ Sbjct: 62 NQQHLKKFIDDGRSILIEDNFRNLGTALAKNGVKSVDGIVYDLGVSSPQFDDAQRGFSYK 121 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ SA +VVN+ + L +IL GEE+ A +IA I +RR+S P +T Sbjct: 122 LDAPLDMRMNQQQALSAMNVVNEWPYEKLVKILYRYGEERFAKQIARKIERRRESKPIKT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ + HPA ++FQA+RI VN+E+ L L A + L GG + Sbjct: 182 TFELVDVIKEAIPAAARRHGGHPAKKTFQAIRIAVNDELGALEDSLEQALELLNVGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F + + + F+ I KK ++P+QE++A N Sbjct: 242 VITFQSLEDRLVKTMFHEKVSLADELPPGLPVIPPEMQPKFKLINKKPILPSQEELANNH 301 Query: 305 RSRSAKLRAGMRTV 318 R+ SAKLR R Sbjct: 302 RAHSAKLRIIERIK 315 >gi|325695197|gb|EGD37098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK150] Length = 316 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A DVVN + +DL RI GE+K + +IA I + R +TT + Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKLIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VNNE+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNNELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+QE++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSQEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|167622387|ref|YP_001672681.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4] gi|262826525|sp|B0TQM9|RSMH_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167352409|gb|ABZ75022.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4] Length = 315 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 173/308 (56%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P + +D TFG GG+SR + +IA+DRDP A++ + Sbjct: 6 EHLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F + F QL DYV D +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 66 QFKDDSR--FQIVHGGFGQLADYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+ + +A ++D+ + GEEK + IA I R+ APF T++ Sbjct: 124 PLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F S + + + + K + P+ E++ N R+RS Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEEEINKSRKLKGVGKAIKPSAEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAQR 310 >gi|304386665|ref|ZP_07368947.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC 13091] gi|304339250|gb|EFM05328.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC 13091] Length = 328 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ ATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDSATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ + + + + P + + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGR-ALKPGEAE 294 Query: 300 VAFNRRSRSAKLRAGMRTV 318 +A N R+RSA LR RT Sbjct: 295 IAANPRARSAVLRVAERTA 313 >gi|218281029|ref|ZP_03487608.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989] gi|218217710|gb|EEC91248.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989] Length = 308 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 7/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +H+ VLL + I +L + +D T G GG+S K ++ A D D A+ Sbjct: 2 EHISVLLNESIDMLQIKEDGIYVDCTLGRGGHSSEILKRLTSGHLYAFDCDQNAIDESMP 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ +QF+L + F L+ + +GV+ + DLGVSS Q D RGFS++ L Sbjct: 62 RLKAIGDQFTLIHSPFENLKSELAKRGVNFVDGIFMDLGVSSPQFDDAQRGFSYRWDARL 121 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S A VVN + +DL RIL GEE A +IA I K R+ AP +TT +L Sbjct: 122 DMRMDQSQELDAYVVVNTYDKEDLIRILKRYGEEPFAQKIADKICKAREIAPIETTFELV 181 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI VN+E+E+L L L G + V++FH Sbjct: 182 DVIKSALPAAVLRKKGHPAKQTFQAIRIEVNHELEQLETVLHDGLTMLNPHGRMAVITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ F + + + +Q + +K V+ + E++ N R+ SAKL Sbjct: 242 SLEDRIVKEIFKEVAVAKKVNKRLPQVGTENLEYQLVNRKPVLASSEELEMNNRAHSAKL 301 Query: 312 RAGMR 316 R + Sbjct: 302 RGIEK 306 >gi|325142966|gb|EGC65323.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 961-5945] Length = 328 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17025] gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17025] Length = 331 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 149/329 (45%), Positives = 204/329 (62%), Gaps = 5/329 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68 +A H+PVLL ++A + P V LD TFGAGGY+R + G+ VI +DRDP Sbjct: 1 MAAAETGRRPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ Q+ Y ++ L TFSQL D + +DGVV DLGVSSMQ+D DRGFSFQ Sbjct: 60 LALEMAQDWAGAYGDRLRLVAGTFSQL-DVHAGEPLDGVVLDLGVSSMQLDQADRGFSFQ 118 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 K GPLDMRMS G SA+D+VN+A+ + L IL GEE+ + RIA AIV+ R + P T Sbjct: 119 KDGPLDMRMSQQGESAADLVNEASEETLADILYHYGEERASRRIARAIVEARAAGPITRT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+ALK GG L VV Sbjct: 179 LHLAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALKPGGRLAVV 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+F RS G+ R+ + A A F ++ + P + ++A N R+R Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAEAARFTLPLRRAISPDEAELADNPRAR 298 Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 SA+LR G+RT + D + +P +P Sbjct: 299 SARLRVGVRTDAPAGPVDPQVLGMPLIPK 327 >gi|225858187|ref|YP_002739697.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585] gi|298254744|ref|ZP_06978330.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502138|ref|YP_003724078.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|262826820|sp|C1CBB2|RSMH_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225720978|gb|ACO16832.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585] gi|298237733|gb|ADI68864.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|255068190|ref|ZP_05320045.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256] gi|255047532|gb|EET42996.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256] Length = 317 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 169/313 (53%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+ VLL + + L + +D TFG GG+SR +I D+DP Sbjct: 1 MSNAEYQHITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ Q+ + + + ++ FS Q D + + +DG +FDLG+SS QID G RGFS Sbjct: 61 AIEAAQK-LAEQDGRVTVVHDRFSSFQTTLDKLDIEEIDGALFDLGISSPQIDDGARGFS 119 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P Sbjct: 120 FRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRTESPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+ L+ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L Sbjct: 180 DTTRKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMGRLKQGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK+F S R + P K + P E+ A N Sbjct: 239 AVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 299 RARSAVLRVAERT 311 >gi|148983740|ref|ZP_01817059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP3-BS71] gi|149013058|ref|ZP_01833924.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP19-BS75] gi|168484209|ref|ZP_02709161.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1873-00] gi|194398555|ref|YP_002037018.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54] gi|225856075|ref|YP_002737586.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031] gi|262825679|sp|C1CIJ8|RSMH_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826787|sp|B5E6Z2|RSMH_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4009486|gb|AAC95454.1| YllC [Streptococcus pneumoniae G54] gi|147763093|gb|EDK70035.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP19-BS75] gi|147923887|gb|EDK74999.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP3-BS71] gi|172042545|gb|EDT50591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1873-00] gi|194358222|gb|ACF56670.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54] gi|225724871|gb|ACO20723.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031] gi|301799463|emb|CBW32003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae OXC141] gi|332077620|gb|EGI88081.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA41301] gi|332202242|gb|EGJ16311.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA41317] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|327467238|gb|EGF12742.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK330] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQRAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|257463543|ref|ZP_05627936.1| methyltransferase [Fusobacterium sp. D12] gi|317061098|ref|ZP_07925583.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12] gi|313686774|gb|EFS23609.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12] Length = 313 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ + Sbjct: 8 YHIPVLYEETLENLLWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDASAIAFCK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y +Q+S+FQ F + VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 68 KRLEKYGKQWSVFQNNFENIDIVSYLAGLDKVDGILMDIGVSSTQLDDGERGFSYRYDAK 127 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVNQ +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 128 LDMRMNAEQELSAYEVVNQYAEQDLVRILFEYGEERYAKKIAAFICENRKEKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + + HPA ++FQA+R+ VN E+E L ++ + + LK G L +++FH Sbjct: 188 VAIIKRA--YPERAAKHPAKKTFQAIRMEVNRELEVLETAIQKSVELLKPKGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + A + ITKK ++P++E+V N R+ S+K Sbjct: 246 SLEDRLVKTVFKDLARACKCPPELPVCVCGGKAKVKIITKKPILPSEEEVGKNNRAHSSK 305 Query: 311 LRAGMRTV 318 LR R Sbjct: 306 LRIVERLA 313 >gi|149018026|ref|ZP_01834485.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP23-BS72] gi|147931590|gb|EDK82568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP23-BS72] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|254805557|ref|YP_003083778.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14] gi|254669099|emb|CBA07673.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14] Length = 328 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|331090606|ref|ZP_08339457.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401046|gb|EGG80641.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 2_1_46FAA] Length = 311 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLLE+ + LN P + +D T G GG++ CK + I +D+D A+ Sbjct: 1 MTFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAFEVCKQLSDKGSFIGIDQDEAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +RD+ E+ ++ ++ + ++ + VDG+V DLGVSS Q+D +RGFS++ Sbjct: 61 AAGIRLRDFGERVTIVRSNYCDMKLQLQKLGIDKVDGIVLDLGVSSYQLDTAERGFSYRV 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN + +L RI+ GE+K A IA IV R+ +TT Sbjct: 121 DVPLDMRMDRRQEMTAKDIVNTYSEMELYRIIRDYGEDKFAKNIAKHIVLEREKGSIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I++ + + N HPA R+FQA+RI +N E++ L L L G + + Sbjct: 181 GQLIEIIKRAIPMKFQKNGGHPAKRTFQAIRIELNRELDVLRDSLDEMIDMLNENGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F H + + + IT+K ++P+ E++ +N RS Sbjct: 241 ITFHSLEDRIVKSIFRRNENPCTCPSHFPVCVCGNESKGKVITRKPILPSAEELEYNSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|324992001|gb|EGC23923.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK405] gi|325688754|gb|EGD30763.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK115] gi|327490522|gb|EGF22303.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1058] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|227874385|ref|ZP_03992569.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Oribacterium sinus F0268] gi|227839793|gb|EEJ50239.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Oribacterium sinus F0268] Length = 311 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H +++E+ + LN + +D T G GG+S + +I +D+D A+ E Sbjct: 5 HKSIMVEECMEGLNIKKDGIYVDGTLGGGGHSFHILERLGEKGQLIGIDQDEDAILAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +Q + + + + + + VDG++ DLGVSS Q D +RGFS++ PL Sbjct: 65 RLKPFAKQLHIIRDNYEHFPEILSSLSIEKVDGILLDLGVSSHQFDEEERGFSYRFDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA D+VN + L I+ GE+K A IA IV RQ P +TT++L+ Sbjct: 125 DMRMDQRQDFSAKDLVNSYSESSLFHIIRDYGEDKFAKNIAKHIVLARQEKPIETTKELA 184 Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + HPA R+FQA+RI +N E+E L L+S +AL GG + ++SFH Sbjct: 185 EIISHAIPMKFRLQGGHPAKRTFQAIRIALNRELEVLENSLKSMIEALNPGGRICIISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + ++ + I++K + P++E++ N R++SAK Sbjct: 245 SLEDRIVKRSFKEAENPCICPPDFPVCTCGRKSLGKVISRKAICPSEEEMEENPRAKSAK 304 Query: 311 LRAGMRT 317 LR RT Sbjct: 305 LRIFERT 311 >gi|261345652|ref|ZP_05973296.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM 4541] gi|282566134|gb|EFB71669.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM 4541] Length = 317 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 166/320 (51%), Gaps = 16/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNLKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A+ QE +F + FS + DY ++ +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQEI---DDPRFMIKHGPFSAIADYAEEEGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA+ + A D+ +L GEE+ A RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAQWLMTAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177 Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + T + + V K+ HPATRSFQA+RI++N+E+EE+ + L A L Sbjct: 178 EEPLTRTRHLAELIAKVSPMKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPE 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQED 299 G L V+SFHSLEDRLVK+F S + + A + + P+ + Sbjct: 238 GRLSVISFHSLEDRLVKRFIRQHSSGPSVPPGIPLTEAQIKELGAAKLRGLGKMKPSDSE 297 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 + N R+RS+ LR R E Sbjct: 298 IDENPRARSSVLRFAERAPE 317 >gi|116334056|ref|YP_795583.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus brevis ATCC 367] gi|122269260|sp|Q03QH0|RSMH_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116099403|gb|ABJ64552.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus brevis ATCC 367] Length = 314 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 HV VLL++ +A L P V +D T G GG+S+ + ++ A D+D A++ +E Sbjct: 6 HVTVLLKEAVAGLAIKPTGVYVDCTLGGGGHSQRILEQLTTGHLYAFDQDQTAITYNEEH 65 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y + + + ++ F Q+Q + ++ VDG+++DLGVSS Q D DRGFS+Q P Sbjct: 66 LKTYLDAGKLTFIKSNFRQIQTELTERGITQVDGILYDLGVSSPQFDEADRGFSYQHDAP 125 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SA VVN+ + DL RI GEEK A IA AI + R+ AP TT L Sbjct: 126 LDMRMDQSQKLSAWIVVNEWSFNDLLRIFHRYGEEKFAKPIARAIERHREQAPIDTTGQL 185 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA + FQA+RI VN+E+ L L A L G + V++F Sbjct: 186 VEIIKEGIPAAARRHGGHPAKKVFQAIRIAVNDELGALEDSLEQAVSLLDVNGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F +S + + F+ + K ++P++E++A N R+ SA Sbjct: 246 QSLEDRLVKTMFREQSSLPELPHGIPVIPDNLQPDFKLVNHKPILPSEEELAVNHRAHSA 305 Query: 310 KLRAGMRTV 318 KLR + Sbjct: 306 KLRILEKIK 314 >gi|261823024|ref|YP_003261130.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163] gi|261607037|gb|ACX89523.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163] Length = 314 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 177/314 (56%), Gaps = 18/314 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN G +D TFG GG+SR ++A+DRDP A+ Sbjct: 3 ENYKHTSVLLDEAVNGLNIRSGGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS + DYV ++ +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAKAI---DDPRFSIIHGPFSAMADYVAERGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A L G L V Sbjct: 180 TKELAELI-AAASPVREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F +S + + A + + KK ++P++E+VA Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEAQLRSQGGQTLKPVGKK-LMPSEEEVAE 297 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 298 NPRARSSVLRFAER 311 >gi|85712541|ref|ZP_01043589.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145] gi|85693675|gb|EAQ31625.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145] Length = 315 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 13/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H+ VLLE+ I L P + +DATFG GG++R+ VIALD+DP Sbjct: 1 MTEQNAPHISVLLEESIRALVTDPDGIYIDATFGRGGHTRALLSKLSPKGRVIALDQDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ Q E+FS+ FS L + V G++FDLGVSS Q+D +RGF Sbjct: 61 AIASAQAL--ADDERFSIIHTPFSDLAHIIEQQQLAHQVTGILFDLGVSSPQLDDAERGF 118 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+D ++ A D+T +L GEE+ A +IA AIV R+ P Sbjct: 119 SFMRDGPLDMRMDSSRGETAADWLSYAEEDDITYVLKTYGEERFARKIARAIVHDREQKP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+ L+ LI + V + ++ HPATRSFQA+RI VN E+E++ L ++ ALK G Sbjct: 179 FTRTRQLAELIGRLVPSKEKHK-HPATRSFQAIRIHVNRELEQIEDALEASLTALKEDGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L+V+SFHSLEDR+VK+F + S + + A + + K + P+ ++ Sbjct: 238 LVVISFHSLEDRIVKRFMRTHSQPKQVPPGLPITEAELNKDRRLALESKAIKPSAAELEL 297 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR R Sbjct: 298 NPRARSSVLRIARRLAH 314 >gi|324991745|gb|EGC23677.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK353] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLRDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|327472730|gb|EGF18157.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK408] Length = 316 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|114564962|ref|YP_752476.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB 400] gi|122298407|sp|Q07WH7|RSMH_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114336255|gb|ABI73637.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB 400] Length = 313 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 167/314 (53%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLNETVDGLNIQSDGIYIDGTFGRGGHSRHVLSHLGENGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL +YV + ++GV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLAEYVEELGLTGKINGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK + IA I R+ P Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALAVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F S + A + + K + P+ ++ Sbjct: 237 LSVISFHSLEDRMVKRFIRRHSQGESVPHGLPIMEAELNKSRKLKAVSKALKPSDAELEL 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRVAER 310 >gi|127514389|ref|YP_001095586.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4] gi|262826527|sp|A3QIM9|RSMH_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126639684|gb|ABO25327.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4] Length = 313 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 173/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + +A LN P + +D TFG GG+SR K +IA+DRDP A++ ++ Sbjct: 7 HLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQAIAAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ F QL YV D +DG++FD GVSS Q+D +RGFSF + GP Sbjct: 67 FADDAR--FSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + +A ++D+ + GEEK A IA I R PF T++L Sbjct: 125 LDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIARVSKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + A + + K + P+ E++ N R+RS+ Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPLTEAEINKTRLLKAVGKAIKPSAEEIDRNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|301793586|emb|CBW35963.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV104] gi|332204336|gb|EGJ18401.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA47901] Length = 316 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + + A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIHQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|253988586|ref|YP_003039942.1| S-adenosyl-methyltransferase MraW [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780036|emb|CAQ83197.1| s-adenosyl-l-methionine-dependent methyltransferase [Photorhabdus asymbiotica] Length = 314 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MANSHFKHTSVLLDEAVNGLNIRKDGIYIDGTFGRGGHSRLILSQLGMEGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIETAKSI---TDPRFSIIHGPFSELAHYVENAGLTGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA++ + +A D+ +L GEE+ A RIA AIV R Q P Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIAKAIVTRNQEEP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T+ L+ LI + K HPATRSFQA+RI++N+E+EE+ Q L A + L G Sbjct: 178 ITRTKVLADLIAQA-SPVKEKYKHPATRSFQAIRIYINSELEEIEQALDGALQVLAPRGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + +SI K + P++ + Sbjct: 237 LSVISFHSLEDRIVKRFIRHNSRGPQVPAGLPLTEEQLKAQGGRSLKSIGK--MKPSENE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR + E Sbjct: 295 VADNPRARSSVLRFAEKVSE 314 >gi|268591763|ref|ZP_06125984.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131] gi|291312724|gb|EFE53177.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131] Length = 317 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 169/322 (52%), Gaps = 20/322 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A+ Q +F + FS + +YV ++ +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQTI---DDPRFMIKHGPFSAIAEYVEEEGLVGQIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA + A D+ +L GEE+ A RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMDAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177 Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + T + + V K+ HPATRSFQA+RI++N+E+EE+ + L A L Sbjct: 178 EEPLTRTRHLAELIAKVSPMKDRHKHPATRSFQAIRIYINSELEEIEKALEGAMNVLAPQ 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQ 297 G L V+SFHSLEDRLVK+F S + + A A + + K + P++ Sbjct: 238 GRLSVISFHSLEDRLVKRFIRKNSKGPSVPAGIPLTEAQIKELGAAQLRDLGK--MKPSE 295 Query: 298 EDVAFNRRSRSAKLRAGMRTVE 319 ++ N R+RS+ LR + E Sbjct: 296 NEIDENPRARSSVLRFAEKAAE 317 >gi|315181138|gb|ADT88052.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii NCTC 11218] Length = 316 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 167/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ESFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + G+ S + QA++ D+T ++ GE+K A RIA AIV R++ Sbjct: 120 KDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++ +V Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTQEQIRALGSADLRTVGKAIKPSEHEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 A N RSRS+ LR + Sbjct: 300 AMNPRSRSSVLRIAEK 315 >gi|327459305|gb|EGF05651.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1] Length = 316 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|319947571|ref|ZP_08021801.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus australis ATCC 700641] gi|319746259|gb|EFV98522.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus australis ATCC 700641] Length = 316 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSQLSEKGHLYAFDQDQHAIDNAEK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + +DG+ +DLGVSS Q+D RGFS++K Sbjct: 67 RLAPYVEKGMVTFIKDNFRNLQARLQELGVNEIDGICYDLGVSSPQLDERSRGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNQEASLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L GG + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVGGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +++K ++P+QE++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLKPKMELVSRKPILPSQEELEKNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|322391390|ref|ZP_08064860.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus peroris ATCC 700780] gi|321145816|gb|EFX41207.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus peroris ATCC 700780] Length = 316 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV V+L + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F L+D + D +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +++K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMGLVSRKPILPSKEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|261365120|ref|ZP_05978003.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996] gi|288566552|gb|EFC88112.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996] Length = 317 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+ VLL + + L + +D TFG GG+SR +I D+DP Sbjct: 1 MSNAEYQHITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ Q+ + + + ++ FS Q D + + +DG +FDLG+SS QID G RGFS Sbjct: 61 AIEAAQK-LAEQDGRVTVVHDGFSSFQTTLDKLGIEEIDGALFDLGISSPQIDDGARGFS 119 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G+SA+D + A+ +DL ++ GEE+ + +IA AIV +R P Sbjct: 120 FRFDAPLDMRMDPTRGMSAADWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+ L+ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L Sbjct: 180 DTTRKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMGRLKEGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK+F S R + P K + P E+ A N Sbjct: 239 AVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 299 RARSAVLRVAERT 311 >gi|148556856|ref|YP_001264438.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1] gi|262826617|sp|A5VDD4|RSMH_SPHWW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148502046|gb|ABQ70300.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1] Length = 322 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 193/313 (61%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T HVPVL+++VIA L PA G+ +D TFGAGGY+R+ + G+ V A DRDP A++ G+ Sbjct: 3 TTAPHVPVLIDEVIAGLEPATGETHVDGTFGAGGYTRALLQAGARVYAFDRDPDAIAEGR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + L FS++ + + ++ VDGV D+GVSSMQ+D DRGFSFQ GP Sbjct: 63 ALEDGQDGRLILVPERFSRMAEALNERGIDQVDGVTLDIGVSSMQLDRADRGFSFQADGP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM SG+SA+D VN A+ ++ +L LGEE +A R+A AIV+ R P T +L+ Sbjct: 123 LDMRMEKSGMSAADFVNTADEAEIADVLHDLGEEPRARRVARAIVQAR---PITRTSELA 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + + PATR+FQA+RI +N E++EL QGL +AE+ L+ GG L VVSFHS Sbjct: 180 EVVRRALGHKPHEKKDPATRTFQAIRIHLNAELDELEQGLAAAERVLRPGGRLAVVSFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +EDR+VK+F RSG A +P F+++ K V + ++A N RSRSA Sbjct: 240 IEDRIVKRFLRDRSGATPAGSRHLPDARAGGPRPSFEAVA-KPVRAGEAELARNPRSRSA 298 Query: 310 KLRAGMRTVERSI 322 LR RT Sbjct: 299 TLRVARRTAAAPW 311 >gi|309803099|ref|ZP_07697196.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 11V1-d] gi|308164607|gb|EFO66857.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 11V1-d] Length = 315 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 1 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLRPTLKIISRKPIVATDKELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|148996748|ref|ZP_01824466.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP11-BS70] gi|168576735|ref|ZP_02722593.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae MLV-016] gi|307066994|ref|YP_003875960.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pneumoniae AP200] gi|147757323|gb|EDK64362.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP11-BS70] gi|183577531|gb|EDT98059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae MLV-016] gi|306408531|gb|ADM83958.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pneumoniae AP200] Length = 316 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLIRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|319404518|emb|CBI78123.1| S-adenosyl-methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 349 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 162/325 (49%), Positives = 212/325 (65%), Gaps = 3/325 (0%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PVLL+ V+A L P G ++D TFGAGGYS + G+ VIALDRDP A+ GQ Sbjct: 25 VERHIPVLLQSVLAELAPLAGSKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + L QA FSQL D++ ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMR Sbjct: 85 LVDQFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A+DVVN DL ++ GEE+ A RIA I KRR PF T DL+ ++ Sbjct: 144 MGQIGFTAADVVNYLKADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAVE 203 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR Sbjct: 204 SLIGRKPGDHIHPATRVFQALRIYVNNELAELACGLFAAERVLKAGGRLAVVSFHSLEDR 263 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VKKFF++RSG R++ + PA F + K V PTQE++ N R+RSA+LR G+R Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQQNPRARSARLRMGVR 323 Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341 T E +I D + L L + +F G Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346 >gi|256390851|ref|YP_003112415.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM 44928] gi|256357077|gb|ACU70574.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM 44928] Length = 316 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 125/314 (39%), Positives = 179/314 (57%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 T H+PV+LE+ + +L P PG V+LDAT G GG+S +F + +I LDRDP A Sbjct: 2 TSATHIPVMLERCVEILGPALERPGAVVLDATLGLGGHSEAFLRRFPDVRLIGLDRDPQA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + E+ +L A + ++ D + + G +FDLGVSS+Q+D +RGF++ Sbjct: 62 LEASGRRLAPFGERATLVHAVYDEIPDVLERLGVAELSGTLFDLGVSSLQLDMRERGFAY 121 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM GI+A+D+VN D+ RIL GEE+ A RIA IV R+ PF Sbjct: 122 SYDAPLDMRMDSSRGITAADIVNTYPAADIARILRDYGEERFARRIADRIVAEREKEPFT 181 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT LS L++ ++ ++ HPA R+FQALRI VN+E+ L + L +A A GG + Sbjct: 182 TTARLSDLVRDSIPAATRRTGGHPAKRAFQALRIAVNDELPVLERALPAAVAATGLGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA S + + F+ +T+ PT + A N R Sbjct: 242 AVLSYHSLEDRLVKRVFAKASESAAPPGLPVVPEQYQPKFRLLTRGAEPPTDAETAENPR 301 Query: 306 SRSAKLRAGMRTVE 319 + SAKLRA R E Sbjct: 302 AASAKLRAAERVRE 315 >gi|114777870|ref|ZP_01452801.1| methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551861|gb|EAU54401.1| methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 331 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 162/310 (52%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H+PVL + I + P +D TFG GG+SR ++A DRDP AV+ Sbjct: 6 EYSEHIPVLRDAFIDAIFSDPDGCYVDCTFGRGGHSRQLLARLSEKGRLLAFDRDPDAVA 65 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+E + +F++ A F++L + V G+ FDLGVSS Q+D RGFSF++ Sbjct: 66 AGEE-LAQQDARFAIEHADFARLGEVLDARGWCQVTGIGFDLGVSSPQVDQAQRGFSFRQ 124 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G S + + ++L IL G+E+ A RIA AI+K TT Sbjct: 125 DGPLDMRMDTTQGQPLSRRLEHVSERELIDILRRFGDERYAQRIARAILKAMHDGALTTT 184 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 DL + V + HPATR+FQALRI+VN+E++++ G+ +A L+ GG L V Sbjct: 185 SDLENACFHAVPKQARYGSTHPATRTFQALRIWVNDEMQQIDDGISAAVDHLQPGGRLAV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHS EDR ++ +R M + + KK V P + +VA N RS Sbjct: 245 ISFHSGEDRRIRDLIEARVHACTCPPQMPVCVCGKKPTMRWLQKKPVRPDEGEVAANPRS 304 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 305 RSSMLRVAQR 314 >gi|306824545|ref|ZP_07457891.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433332|gb|EFM36302.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 316 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELVANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|170748783|ref|YP_001755043.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans JCM 2831] gi|263456464|sp|B1LYT9|RSMH_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170655305|gb|ACB24360.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans JCM 2831] Length = 353 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 134/313 (42%), Positives = 188/313 (60%), Gaps = 8/313 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 HVPVLL +V+ L G +D TFGAGGY+R+ V+A+DRDP A++ GQ Sbjct: 23 PHVPVLLAEVVEALGT-EGGTAVDGTFGAGGYTRALLAADPALQVVAIDRDPTAIAGGQA 81 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + L F L + + VD VV D+GVSSMQ+D +RGFSF+ GPL Sbjct: 82 LVAESGGRLRLLPGRFGDLDGLLAEAGIAQVDRVVLDIGVSSMQLDAPERGFSFRSDGPL 141 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM+C G SA+D+VN+A+ L I+ GEE+++ +A I++ R+ +TT L+ Sbjct: 142 DMRMACDGPSAADLVNEADETVLADIIYHFGEERRSRAVARTILEARRRGRIETTAQLAE 201 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 L+ V + IHPATR+FQ LRI VN+E+ EL + L +AE+ L+ GG L VV+FHSL Sbjct: 202 LVAGVVRTEPGSHIHPATRTFQGLRIAVNDELGELVRALHAAERVLRPGGRLAVVTFHSL 261 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+FFA+RSG+ +P F+ +TK V+P + + A N R+RSAKL Sbjct: 262 EDRIVKQFFAARSGRSAQGSRHLPGGPVETVRSFRPVTKGPVLPGEAETARNPRARSAKL 321 Query: 312 RAGMRTVERSIED 324 RA RT E Sbjct: 322 RAAERTESDVPEP 334 >gi|295398679|ref|ZP_06808703.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563] gi|294973114|gb|EFG48917.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563] Length = 316 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 163/310 (52%), Gaps = 11/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +D T G G+S +IA D+D A+ ++ Sbjct: 7 HISVLLNESVDGLAIKPNGIYVDCTLGGAGHSSKIAAALSDEGRLIAFDQDLVAIGNAEK 66 Query: 77 TMRDYKE--QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + +L F +Q + + GVDG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 VLAAEIESGKVTLVHNNFRHIQSELEKMGITGVDGILYDLGVSSPQLDEIERGFSYHQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A ++N DL RI GEEK + +IA I +RR T++ Sbjct: 127 PLDMRMDQTQALTAETIINDWEYNDLVRIFYRYGEEKFSKQIARKIEQRRADHRITRTEE 186 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++++ + ++ HPA R FQA+RI VN+E+ + L A L GG + +S Sbjct: 187 LVDIVKEAIPAPARRKGGHPAKRIFQAVRIAVNDELGAIEDSLEQALNLLNVGGRVSAIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDR+VK+ F S ++ NA A F+ + +K + ++E++A+N R++S Sbjct: 247 FQSLEDRIVKQMFKDASTGEELPANLPVINADIEAPFKLVNRKPIYASEEELAYNSRAQS 306 Query: 309 AKLRAGMRTV 318 AKLR R Sbjct: 307 AKLRIIERIK 316 >gi|312871660|ref|ZP_07731752.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 3008A-a] gi|311092885|gb|EFQ51237.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 3008A-a] Length = 315 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 1 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K Q SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKKSFSEVLKANSKPQLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQVPDSLKPTLKIISRKPIVATNKELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|319900359|ref|YP_004160087.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108] gi|319415390|gb|ADV42501.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108] Length = 306 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 106/315 (33%), Positives = 162/315 (51%), Gaps = 16/315 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR K G ++ D+D Sbjct: 1 MKEEQTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILTRLKDGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L +++ VD ++ DLGVSS D RGFS Sbjct: 61 A-----ERNIVNDPHFTFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSQRGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G +A+DVVN + + L I + GE K + ++A I K R + Sbjct: 116 FRFDGELDMRMNKRAGTTAADVVNNCSEEHLADIFYLYGELKNSRKLASVIAKARAAQKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN+E+E L + L +A +ALK GG L Sbjct: 176 TTIGEFLDIIKP--LFGREREKKELAKVFQALRIEVNHEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPR 291 Query: 306 SRSAKLRAGMRTVER 320 SRSAKLR + + Sbjct: 292 SRSAKLRIAEKVERK 306 >gi|303259429|ref|ZP_07345406.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP-BS293] gi|303261184|ref|ZP_07347133.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS292] gi|303263511|ref|ZP_07349434.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397] gi|303265804|ref|ZP_07351702.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457] gi|303267765|ref|ZP_07353567.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458] gi|302638021|gb|EFL68507.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS292] gi|302639363|gb|EFL69821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP-BS293] gi|302642461|gb|EFL72806.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458] gi|302644712|gb|EFL74961.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457] gi|302647284|gb|EFL77508.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397] Length = 316 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 168/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKSKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|167754606|ref|ZP_02426733.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402] gi|237733759|ref|ZP_04564240.1| S-adenosyl-methyltransferase mraW [Mollicutes bacterium D7] gi|167705438|gb|EDS20017.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402] gi|229383097|gb|EEO33188.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. D7] Length = 314 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + DHV VLL++ + LN + +D T G G+S + K ++ D+D A+ Sbjct: 1 MFDHVTVLLKEAVEGLNIKADGIYVDCTLGGAGHSCAILKQLTTGHLYCFDQDQTAIEAA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ + F +++ + + VDG++FDLGVSS Q D G RGFS+ Sbjct: 61 RLRLDAVGNNYTIIYSNFVNIKEKLNELGVTRVDGILFDLGVSSPQFDTGSRGFSYNYDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S A +VN + + IL +EK A +IA I ++RQ P +TT + Sbjct: 121 RLDMRMDTSNPLDAYAIVNTWPYERIVEILYKYADEKFAKQIARKIEQKRQIRPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + F++ HPA R+FQALRI VN+E+ + L+ + L GG + V++ Sbjct: 181 LVDIIKDAIPAFARRKGGHPAKRTFQALRIAVNDELNVFDRALKDSLDLLNVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLED++ K F + K + + + F+ I KK +V ++E++ N R+ S Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPDYLQPRFKLINKKAMVASKEELEVNHRAHS 300 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 301 AKLRIIER 308 >gi|327404192|ref|YP_004345030.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola taffensis DSM 16823] gi|327319700|gb|AEA44192.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola taffensis DSM 16823] Length = 308 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 153/310 (49%), Gaps = 10/310 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFA 70 ++ HVPV+L++ + L P + +D TFG GG+SR+ +I D+DP A Sbjct: 3 NNDATYHVPVMLQECLDGLVINPDGIYVDVTFGGGGHSRAIFEKLSPKGKLIVFDQDPDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + E + A + VDG++ DLGVSS Q D RGFS + + Sbjct: 63 RANAWE--APNFHFVAANFAFLRNHLRVMGIPAVDGILADLGVSSHQFDDAKRGFSIRSN 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ +G +A+ +V + + L I GE + A +VK R + +TT Sbjct: 121 EVLDMRMNQAGDFTAAKIVQTYDEEQLAAIFRKYGELDHPFKTAVELVKARNKSKIKTTG 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L + K+++ + FQALRI VN E++ L + L +LK G L+V+S Sbjct: 181 ELMEALMPVAPKFKDHK--FFAQVFQALRIEVNQEMDVLEKFLLQTADSLKPDGRLVVMS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK S + P F+ I +K ++P++E++ N R+RSA Sbjct: 239 YHSLEDRLVKNLMKRGSLDGSIEKDFFGKVLKP--FEEINRKPILPSEEEIQRNTRARSA 296 Query: 310 KLRAGMRTVE 319 KLR R + Sbjct: 297 KLRIAKRVED 306 >gi|328945057|gb|EGG39213.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1087] Length = 316 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKDASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|262383993|ref|ZP_06077129.1| methylase MraW [Bacteroides sp. 2_1_33B] gi|262294891|gb|EEY82823.1| methylase MraW [Bacteroides sp. 2_1_33B] Length = 305 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 167/307 (54%), Gaps = 17/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPV+L + + L+ P + +D TFG GG+SR K + + D+D A Sbjct: 8 YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSRKILKRLGSEGELYGFDQDADA----- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F+ ++ F L +++ VDG++ DLGVSS D DRGFSF+ G Sbjct: 63 EHNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+D+VN + L + + GE K + ++A +VK R++ +T ++ Sbjct: 123 ALDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIEE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++ Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAK Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298 Query: 311 LRAGMRT 317 LR + Sbjct: 299 LRIAEKV 305 >gi|323350327|ref|ZP_08085992.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis VMC66] gi|322123512|gb|EFX95183.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis VMC66] Length = 316 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|255037275|ref|YP_003087896.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM 18053] gi|254950031|gb|ACT94731.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM 18053] Length = 305 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 8/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + HVPV+L + + L P + +D TFG GG+SR+ + ++ D+DP A Sbjct: 1 MDSPSTYHVPVMLSECLEGLQIQPDGIYVDVTFGGGGHSRAILEKLTTGRLLVFDQDPDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 S E D + F + V+G++ DLGVSS QI+ +RGFS + Sbjct: 61 ASNALEFKDDQRFTFIPANFRHLKRYLKLNKAPLVNGILADLGVSSHQINTPERGFSTRF 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM+ + +A +V+ + +L RILG+ GE A A AI+ R ++ +T Sbjct: 121 DADLDMRMNPNIEKTAREVLKTRSAAELQRILGMYGEVTNARTAAEAIIAARYNSQIETV 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL ++ + + N+ + FQALRI VN+E+ L + L + L G L+V+ Sbjct: 181 NDLKGILMRYAPKHRENK--YFAQVFQALRIEVNDELAVLEEFLAQVPEVLAPDGRLVVM 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK + + + P +S+T+K + T E++A N R+RS Sbjct: 239 SYHSLEDRLVKNYIQKGKFYGEVEKDFYGNEIKP--LKSVTRKPIEATAEEIAVNPRARS 296 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 297 AKLRIAEK 304 >gi|152996635|ref|YP_001341470.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1] gi|263456400|sp|A6VYK6|RSMH_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150837559|gb|ABR71535.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1] Length = 312 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 182/314 (57%), Gaps = 9/314 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + T+ +H+ V+L + + +L + +D TFG GG++R ++ D+DP A Sbjct: 1 MTKTMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFS 126 + G+ + +FS+ Q +F+ + +++ + VDGV+ DLGVSS QID +RGFS Sbjct: 61 IGHGK-LLEQEDARFSIVQDSFANMAEHITNVFGVDRVDGVMMDLGVSSPQIDDAERGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM+ G SA++ + + KD+ ++ GEE+ + RIA AI + R P Sbjct: 120 FMNDGPLDMRMNPDKGQSAAEWIATVSEKDMADVMYQYGEERFSRRIAKAICEYRSHTPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT LS +I + + + +PATR+FQ +RI++NNE+ +L GL +A +ALK GG L Sbjct: 180 LTTLQLSKIIAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEIGLEAAAQALKVGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK+F ++ RH+ NAH + K + P+Q +V+ N R Sbjct: 239 AVISFHSLEDRIVKRFMKLQAKGPELPRHLPIRNAHLDIKFKTVGKAIKPSQSEVSENVR 298 Query: 306 SRSAKLRAGMRTVE 319 SRSA LR R + Sbjct: 299 SRSAVLRVLERVSD 312 >gi|257468236|ref|ZP_05632332.1| methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317062518|ref|ZP_07927003.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC 49185] gi|313688194|gb|EFS25029.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC 49185] Length = 313 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 169/317 (53%), Gaps = 13/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M I H+PVL + I L + LD T G GG+S K +I++D Sbjct: 1 MEEIISE---YHIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISID 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 +D A+ ++ + Y ++ +F+ F L + +DG++ D+GVSS Q+D + Sbjct: 58 QDQQAIDFAKKRLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPE 117 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS++ LDMRM+ + SA +VVN+ + + L +IL GEE+ + RIA I + R+ Sbjct: 118 RGFSYRYDTKLDMRMNQNNPLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEARE 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT +L ++I++ + + HPA ++FQA+RI VN E+E L + + A +LK Sbjct: 178 IKKIETTGELVAIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKV 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L +++FHSLEDRLVK F + I A + ITKK ++P +V Sbjct: 236 GGRLGIITFHSLEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEV 295 Query: 301 AFNRRSRSAKLRAGMRT 317 FN R+ S+KLR R Sbjct: 296 EFNNRAHSSKLRVVERI 312 >gi|86148532|ref|ZP_01066819.1| S-adenosyl-methyltransferase [Vibrio sp. MED222] gi|218708478|ref|YP_002416099.1| S-adenosyl-methyltransferase MraW [Vibrio splendidus LGP32] gi|263505899|sp|B7VIZ5|RSMH_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85833678|gb|EAQ51849.1| S-adenosyl-methyltransferase [Vibrio sp. MED222] gi|218321497|emb|CAV17449.1| S-adenosyl-methyltransferase mraW [Vibrio splendidus LGP32] Length = 316 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM +GI S + +A++ D+T ++ GE+K A RIA I+ +++ Sbjct: 120 KDGPLDMRMDPTTGIPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 + V+SFHSLEDR+VK+F S + + K + P++++V Sbjct: 240 ISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPIGKAIKPSKDEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DENTRSRSSVLRIAEK 315 >gi|296877054|ref|ZP_06901095.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC 15912] gi|296431915|gb|EFH17721.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC 15912] Length = 316 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ + Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFDQDQHAIENAKI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + + F L++ + D ++G+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPFIEKGMVTFIKDNFRHLKERLNDIGVTEINGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + I +K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELINRKPILPSEEELEENNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|327462427|gb|EGF08752.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1057] Length = 316 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPEGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + + + F L+ + + + +DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P++E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKEELESNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|87122635|ref|ZP_01078512.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121] gi|86162093|gb|EAQ63381.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121] Length = 313 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 178/315 (56%), Gaps = 10/315 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + +I H+ V+L + + L P +D TFG GG+SR + ++ D+DP A Sbjct: 1 MTESIPVHISVMLNESVEDLITDPNGNYIDGTFGRGGHSRLVLQKLENGKLLGFDKDPVA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGF 125 + G+ + +F + Q +F+ + Y+ +DGV+ DLGVSS Q+D +RGF Sbjct: 61 IEYGKA-LEGEDARFQIVQDSFASMDQYIASHLDESGKLDGVLMDLGVSSPQLDDAERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF GPLDMRM+ G+SA+ + QA K++ ++ GEE+ + RIA AI + R Sbjct: 120 SFMNDGPLDMRMNPGVGLSAAQWIAQAKEKEIADVMYQYGEERFSRRIAKAICEYRAHTE 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+++++ + + +PATR+FQ +RIF+NNE+ +L GL SA ALK GG Sbjct: 180 ILTTLQLANIVKDANPAWEKGK-NPATRAFQGIRIFINNELGDLETGLESAANALKVGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F + S RH+ N ++ K + P++++V N Sbjct: 239 LVVISFHSLEDRIVKRFMKTMSKGPDLPRHLPIRNTELSIKFKTIGKAIKPSKQEVDDNV 298 Query: 305 RSRSAKLRAGMRTVE 319 RSRSA +R R + Sbjct: 299 RSRSAVMRVLERVSD 313 >gi|240126238|ref|ZP_04739124.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|254494330|ref|ZP_05107501.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291] gi|268595426|ref|ZP_06129593.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|268597236|ref|ZP_06131403.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|268599411|ref|ZP_06133578.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|268682771|ref|ZP_06149633.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|268684819|ref|ZP_06151681.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|291043143|ref|ZP_06568866.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] gi|262831552|sp|B4RQD7|RSMH_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226513370|gb|EEH62715.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291] gi|268548815|gb|EEZ44233.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|268551024|gb|EEZ46043.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|268583542|gb|EEZ48218.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|268623055|gb|EEZ55455.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|268625103|gb|EEZ57503.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|291012749|gb|EFE04732.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] Length = 318 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 171/324 (52%), Gaps = 15/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +I AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S + ++ + + + + P + + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGR-ALKPGEAE 294 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 +A N R+RSA LR RT E Sbjct: 295 IAANPRARSAVLRVAERTAGPIPE 318 >gi|113971906|ref|YP_735699.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4] gi|122943466|sp|Q0HE75|RSMH_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113886590|gb|ABI40642.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4] Length = 313 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV + +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK A IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK+F S + + + + K ++P+ E++ Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|262527565|sp|P62471|RSMH_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 315 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H VLL + I LNP G + +DATFG GG++R + VI D+D +A+S Sbjct: 1 MKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISM 60 Query: 74 GQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E+ + + L F L++ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L+ +L G+EK + +IA IV RR+ Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT DL +I+ + + + HPA +SFQA+R+ VN+E+ L + L A K LK G Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + I++K ++ + +++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|329921076|ref|ZP_08277599.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G] gi|328934983|gb|EGG31472.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G] Length = 315 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 13/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE- 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 77 ----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++F SLED++VKK F S + ++ + I++K +V T +++ N RS Sbjct: 245 VITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEENNRS 304 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 305 HSAKLRVAEK 314 >gi|212712749|ref|ZP_03320877.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM 30120] gi|212684665|gb|EEB44193.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM 30120] Length = 317 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 168/320 (52%), Gaps = 16/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A+ QE +F + FS + DYV ++ +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQEI---NDPRFMIKHGPFSAIADYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA + A D+ +L GEE+ + RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTRGQSAQQWLMTAEADDIAWVLKTFGEERFSKRIARAIVERNHNPE 177 Query: 185 FQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + T + + V K+ HPATRSFQA+RI++N+E+EE+ + L A L Sbjct: 178 EEPLTRTRHLAELIAKVSPIKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPE 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQED 299 G L V+SFHSLEDRLVK+F S + + A + + P++ + Sbjct: 238 GRLSVISFHSLEDRLVKRFIRQNSTGPSVPAGIPLTEAQIKELGAAKLRALGKMKPSELE 297 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 + N R+RS+ LR R VE Sbjct: 298 IDENPRARSSVLRFAERAVE 317 >gi|109899828|ref|YP_663083.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c] gi|123170716|sp|Q15Q09|RSMH_PSEA6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109702109|gb|ABG42029.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c] Length = 311 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+ VLL++ I L P V LDATFG GG+++ +IALDRDP A+ Sbjct: 3 TQPSHLSVLLQESIDGLAIKPDGVYLDATFGRGGHTKQILSQLSPNGRLIALDRDPSAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQ 128 + D + FS+ FS+++D + + G++ DLGVSS Q+D +RGFSF Sbjct: 63 AAKALADDAR--FSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ G SA+ + A +D+ +++ GEEK RIAH IV RQ AP T Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQEAPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I V K+ HPATRSFQ +RI++N+E++E+ GL++A +L +GG L V Sbjct: 181 TAQLAEIIDLAV-PVKDKFKHPATRSFQGIRIYINSELDEIRTGLKAALNSLNSGGRLSV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFNRR 305 +SFHSLEDRLVK+F +S + + A + K + P+ ++++ N R Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQAEIDSHKAMKAIGKAIKPSSDELSRNVR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR + Sbjct: 300 ARSSVLRVAEK 310 >gi|319892166|ref|YP_004149041.1| rRNA small subunit methyltransferase H [Staphylococcus pseudintermedius HKU10-03] gi|317161862|gb|ADV05405.1| rRNA small subunit methyltransferase H [Staphylococcus pseudintermedius HKU10-03] gi|323464735|gb|ADX76888.1| S-adenosyl-methyltransferase MraW [Staphylococcus pseudintermedius ED99] Length = 311 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ VLL++ + LN V +D T G G+S+ +IA+D+D A++ Sbjct: 1 MFHHISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSDEGRLIAIDQDMTAINH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ + + F L + + + VDG+++DLGVSS Q+D +RGFS+Q + Sbjct: 61 AKEKLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLGVSSPQLDVPERGFSYQHN 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + SA +VVN + + L +I GEEK + +IA I RRQ P +TT Sbjct: 121 AKLDMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFSKQIARKIEARRQQQPIETTF 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL + I++ + ++ HPA R FQA+RI VN+E+ L A +K G + V+ Sbjct: 181 DLVACIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELAAFEDSLEQAIDHVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K +V D+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTPKLKRVNRKPIVADATDLEDNHRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC 15264] gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC 15264] Length = 317 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 141/310 (45%), Positives = 186/310 (60%), Gaps = 5/310 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H PVLL +V+ L P G VI+DATFGAGGY+R+ G+ VIALDRDP Sbjct: 4 APHAPVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGATVIALDRDPTVQPHADAV 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 D+ +F+L + FS L D D +DG+VFD+GVSSMQ+D +RGFSF + GPLD Sbjct: 64 ANDHPGRFTLVRTPFSGLADAFADSGAARLDGIVFDIGVSSMQLDEAERGFSFMRDGPLD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D+VN + L IL G+E+Q+ RIA AI++RR PF T DL+ + Sbjct: 124 MRMSRDGDSAADIVNTWDHGPLAHILKQYGDERQSGRIATAILRRRTVQPFTRTLDLADV 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ + + HPATR+FQALRI VN+E+ EL GL++AE AL GG L VV+FHSLE Sbjct: 184 VERALGGRRGAPTHPATRTFQALRIAVNDELGELTAGLQAAEAALSPGGRLAVVTFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F R+G P F K + ++A N R+RSAKLR Sbjct: 244 DRIVKAFLTERTGNAPGGSRHAPMAVETRKPSFTLSFKGAREAGEAELAANPRARSAKLR 303 Query: 313 AGMRTVERSI 322 A +RT + Sbjct: 304 AAVRTDAPAW 313 >gi|238855278|ref|ZP_04645597.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3] gi|260664637|ref|ZP_05865489.1| MraW methylase [Lactobacillus jensenii SJ-7A-US] gi|282932429|ref|ZP_06337854.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|313471907|ref|ZP_07812399.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153] gi|238832170|gb|EEQ24488.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3] gi|239529171|gb|EEQ68172.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153] gi|260561702|gb|EEX27674.1| MraW methylase [Lactobacillus jensenii SJ-7A-US] gi|281303378|gb|EFA95555.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] Length = 317 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 167/314 (53%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 T H VLL + I LN + +DATFG GG++R +N ++ D+D +A++ Sbjct: 3 TNFKHTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAINA 62 Query: 74 GQETMRD-----YKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ D ++ + FS L + G+DG+ +DLGVSS Q D DRG Sbjct: 63 AKDNFYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPDRG 122 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM+ A VVN + L IL G+EK + +IA IV+RRQ Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQQK 182 Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L LI++ + +K HPA +SFQA+R+ VN+E++ L L+ A + LK G Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLKPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + + + +K ++ T ++A Sbjct: 243 GRISVITFQSHEDKIVKKIFKQNSEVEVPRGIPVIPDNLKPKLKLVNRKPILATASELAD 302 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 303 NNRSHSAKLRVAEK 316 >gi|322391027|ref|ZP_08064531.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus parasanguinis ATCC 903] gi|321142257|gb|EFX37731.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus parasanguinis ATCC 903] Length = 316 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ + Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFDQDQHAIENAKI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + + F L++ + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPFIEKGMVTFIKDNFRHLKERLNELGVTEIDGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNSYDYHDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + + +K ++P++E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVNRKPILPSEEELEENNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|261378431|ref|ZP_05983004.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685] gi|269145209|gb|EEZ71627.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685] Length = 319 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 171/321 (53%), Gaps = 13/321 (4%) Query: 13 IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 + T G H+ VLL + + L V +D TFG GG+SR +I D+DP Sbjct: 1 MSETEGYQHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDTGRLIVFDKDP 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +E + ++ S+ F+ Q + D VDG +FDLGVSS QID RGF Sbjct: 61 QAIAVAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAVRGF 119 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRTENP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ + + V ++ PATR+FQA+RIF+N E+EE+ L LK GG Sbjct: 180 IDTTGKLAKIAAENV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKEGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L V++FHSLEDR+VK+F S R + ++ +++ K + P +E+ Sbjct: 239 LAVIAFHSLEDRIVKQFVRKYSQHAPLPRWAAVREADLPEPPLKAV-GKAIKPCEEETVA 297 Query: 303 NRRSRSAKLRAGMRTVERSIE 323 N R+RSA LR RT E Sbjct: 298 NPRARSAVLRVAERTAGPIPE 318 >gi|117922183|ref|YP_871375.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3] gi|262826555|sp|A0L1Q0|RSMH_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117614515|gb|ABK49969.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3] Length = 313 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV + +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK A IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTILAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK+F S + + + + K ++P+ E++ Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|154505717|ref|ZP_02042455.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149] gi|153794014|gb|EDN76434.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149] Length = 315 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 168/318 (52%), Gaps = 12/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M ++ H VLLE+ + L P + +DAT G GG++ I +D Sbjct: 1 MEDSM---AFKHTSVLLEETVDGLKVKPDGIYVDATLGGGGHAYEVASRLSDKGRFIGID 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 +D A+ + + E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D + Sbjct: 58 QDADAIEAAGARLSGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGIVIDLGVSSYQLDTAE 117 Query: 123 RGFSFQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS++ PLDMRM + + D+VN + +L R++ GE+K A IA IV R Sbjct: 118 RGFSYRTDAPLDMRMDQRQTTTAKDIVNDYSEAELYRVIRDYGEDKFAKNIAKHIVMERG 177 Query: 182 SAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P +TT L+ +I++ + + HP+ R+FQA+RI +N E++ L + L L Sbjct: 178 KHPIETTGQLNEVIRRAIPMKFQKTSGHPSKRTFQAIRIELNRELDVLRETLDDMIDMLN 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHSLEDR+VK F H + + + IT+K ++P++E+ Sbjct: 238 PGGRICIITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGNISKGKVITRKPILPSEEE 297 Query: 300 VAFNRRSRSAKLRAGMRT 317 + +N RS+SAKLR R+ Sbjct: 298 LMYNSRSKSAKLRIFERS 315 >gi|126172646|ref|YP_001048795.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155] gi|152998944|ref|YP_001364625.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185] gi|160873530|ref|YP_001552846.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195] gi|217971625|ref|YP_002356376.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223] gi|304411651|ref|ZP_07393263.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183] gi|307306297|ref|ZP_07586042.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175] gi|262826489|sp|B8E4L2|RSMH_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826490|sp|A3CZL3|RSMH_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826491|sp|A6WIC3|RSMH_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826492|sp|A9KY21|RSMH_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125995851|gb|ABN59926.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155] gi|151363562|gb|ABS06562.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185] gi|160859052|gb|ABX47586.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195] gi|217496760|gb|ACK44953.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223] gi|304349839|gb|EFM14245.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183] gi|306911170|gb|EFN41597.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175] gi|315265760|gb|ADT92613.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS678] Length = 313 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQVLQQLGENGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV + +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK A IA I R P Sbjct: 118 SFMRDGPLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + SK HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKSKERNKHPATRVFQAIRIYINSELDQIDQALEGAVNVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F S + + + K ++P+ E++ Sbjct: 237 LSVISFHSLEDRIVKRFIRRHSQGESVPHGFPVTEDQINKSRKLRAVGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|291542210|emb|CBL15320.1| S-adenosyl-methyltransferase MraW [Ruminococcus bromii L2-63] Length = 307 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 168/304 (55%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLLE+ + L + +D T G GG+S +I++D+DP A+ E Sbjct: 5 HIPVLLEQAVDALAVKENGIYVDGTAGGGGHSSEILSRLTTGKLISIDQDPDAILTLTER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + + F+ + + + VDGV+ D+GVSS Q+D +RGFSF + PLD Sbjct: 65 FKKNENSIII-KGNFADMVSLLHSRGVGRVDGVLLDIGVSSHQLDTAERGFSFHEDAPLD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG +A+++VN +L RIL + GEEK A I + IVK R P +TT +L+ + Sbjct: 124 MRMSQSGTTAAELVNTLPAGELRRILSVYGEEKFAVAIVNGIVKARAEKPIETTLELAEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I++ V HPA +SFQALRI VN+E+ L +GL A + L +GG L V++FHSLE Sbjct: 184 IKENVPQRVRRDGHPARKSFQALRIAVNDELGVLERGLDGAFELLGSGGRLAVITFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+ AS + + + + +K V + ++ N R+RSAKLR Sbjct: 244 DRIVKQKMASWCQGCTCPKDFPVCVCGNKPKAKLVVRKPVCANETELRNNPRARSAKLRI 303 Query: 314 GMRT 317 + Sbjct: 304 CEKI 307 >gi|253580157|ref|ZP_04857424.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA] gi|251848676|gb|EES76639.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA] Length = 311 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 151/310 (48%), Gaps = 8/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H VLLE+ I L+ P + +D T G G++ I +D+D A+ Sbjct: 1 MEFKHKSVLLEETIEGLDIKPDGIYVDGTLGGAGHAGEVCRKLSAKGRFIGIDQDQDAII 60 Query: 73 CGQETMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + YK+ Q VDG++ DLGVSS Q+D +RGF+++ Sbjct: 61 AASERLAPYKQATIIRSNYCYMVQELAARGIYKVDGILLDLGVSSYQLDNEERGFTYRVD 120 Query: 131 GPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + D+VN K+L RI+ GE+K A IA IV RQ P TT Sbjct: 121 APLDMRMDQRQTQTAGDIVNGYEEKELYRIIRDYGEDKFAKNIAKHIVAARQVKPITTTG 180 Query: 190 DLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I++++ + HPA R+FQA+RI +N E++ L L L GG L ++ Sbjct: 181 ELTEIIRESIPMKMQVKSGHPAKRTFQAIRIELNRELDVLRDSLDGMIDILDDGGRLCII 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + IT+K ++P + ++ N RS+ Sbjct: 241 TFHSLEDRIVKTIFRKNENPCTCPSDFPVCVCGKKSKGKVITRKPILPGETEMEENPRSK 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRIFERV 310 >gi|325956496|ref|YP_004291908.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus 30SC] gi|325333061|gb|ADZ06969.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus 30SC] Length = 315 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 162/314 (51%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG++R +I D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKS 60 Query: 74 GQETMRD-----YKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L F+ LQ + G+DG+ +DLGVSS Q D DRG Sbjct: 61 AKLNFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L IL G+EK + +IAH IV+RR+ Sbjct: 121 FSYRYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIAHKIVERRKDK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQALR+ VN+E++ L L A K L+ G Sbjct: 181 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + + +K + + ++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEK 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|283379446|dbj|BAI66129.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae] gi|283379452|dbj|BAI66134.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae] Length = 314 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 12/317 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLL + + L V +D TFG GG+SR +I D+DP A++ Sbjct: 1 ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ Sbjct: 61 VAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRF 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT Sbjct: 120 DAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V+ Sbjct: 180 RKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+F S + ++ + + + + P + ++A N R+ Sbjct: 239 AFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGR-ALKPGEAEIAANPRA 297 Query: 307 RSAKLRAGMRTVERSIE 323 RSA LR RT E Sbjct: 298 RSAVLRVAERTAGPIPE 314 >gi|229827494|ref|ZP_04453563.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC 49176] gi|229788432|gb|EEP24546.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC 49176] Length = 322 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 12/323 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 MS I H+P++LE+VI L+ P + +D T G GG+S K G +I + Sbjct: 2 FMSENIE---FKHIPIMLEEVIEGLDIKPNGIYVDGTLGGGGHSYEIAKRLVSGGRLIGI 58 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 D+D A+ + ++ ++ + ++ ++Q+ + + VDG++ DLGVSS Q+D Sbjct: 59 DQDEAAIKAAGARLSEFGDRVIIVRSNYAQMVSVLQSLGIEQVDGILLDLGVSSHQLDNA 118 Query: 122 DRGFSFQKSGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ + LDMRM + +VN + +LTRI+ GE++ A++I I+ R Sbjct: 119 ERGFSYMEDALLDMRMDRRQEKTARDIVNYYSQAELTRIIRDYGEDRFAAKIVAKIIDFR 178 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ P +TT +L+ +I+ + HPA R+FQA+RI +N E+ L + + L Sbjct: 179 ENKPVETTGELAEIIKSAIPVKYRLTGGHPAKRTFQAIRIELNRELGVLEESIEGMLDIL 238 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298 GG + V++FHSLEDR+VK F + ++K ++P+ E Sbjct: 239 SDGGRMAVIAFHSLEDRIVKSAFKKAESPCTCPPDFPICVCGKKSKGFVASRKPLIPSDE 298 Query: 299 DVAFNRRSRSAKLRAGMRTVERS 321 + N R++S+KLR +R E + Sbjct: 299 ETERNPRAKSSKLRIFVRKREEN 321 >gi|197285925|ref|YP_002151797.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320] gi|227356432|ref|ZP_03840820.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906] gi|262824977|sp|B4F119|RSMH_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194683412|emb|CAR44158.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320] gi|227163542|gb|EEI48463.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906] Length = 315 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 168/320 (52%), Gaps = 18/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTTNNFSHTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ E +FS+ FS ++ Y+ + VDGV+ DLGVSS Q+D +RGF Sbjct: 61 AIAVANEI---DDPRFSIIHGPFSNIEHYINELGLSGKVDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM +G SA+ + A D+T +L GEE+ A RIA AIV R ++ Sbjct: 118 SFMRDGPLDMRMDPTTGQSAAQWLMNAEEDDITWVLKTFGEERFAKRIARAIVARNKTEE 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + K HPATRSFQA+RI++N+E++E+ + L+ A L G Sbjct: 178 PLTRTKQLADLISEASPVKERHKHPATRSFQAIRIYINSELDEIEKALKGAVSILAPAGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299 L V+SFHSLEDRLVK+F S + + + SI K + PT + Sbjct: 238 LSVISFHSLEDRLVKRFIRDESKGPVVPAGIPLTEEQIKALGSARLSSIHK--MKPTGVE 295 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 V N R+RS+ LR R E Sbjct: 296 VEENPRARSSVLRVAQRIEE 315 >gi|84394442|ref|ZP_00993158.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01] gi|84374941|gb|EAP91872.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01] Length = 316 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 164/316 (51%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM +G+ S + +A++ D+T ++ GE+K A RIA I+ +++ Sbjct: 120 KDGPLDMRMDPTTGVPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 + V+SFHSLEDR+VK+F S + + K + P++++V Sbjct: 240 ISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEDQIKALGSADLKPIGKAIKPSKDEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DENTRSRSSVLRIAEK 315 >gi|225023749|ref|ZP_03712941.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC 23834] gi|224943631|gb|EEG24840.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC 23834] Length = 318 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 172/321 (53%), Gaps = 12/321 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HV VLL + + L PG V +D TFG GG+SR ++ D+DP Sbjct: 1 MSAQELAHVTVLLHEAVDALEVKPGGVYVDGTFGRGGHSRLILSKLGANGRLVVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ ++ + + ++ + FS Q + + VDG +FDLGVSS QID +RGFS Sbjct: 61 AIAVARQ-LAEVDKRVQVVHGGFSGFQVALKGLGIEAVDGALFDLGVSSPQIDDAERGFS 119 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G +A+ + +A +++ ++ GEE+ S+IA AIV++RQ P Sbjct: 120 FRYDAPLDMRMDTTRGQTAAQWLAEAGEEEIREVIRDYGEERFNSQIARAIVQQRQERPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ L + V ++ PATR+FQA+RIF+N E+EE++ L A LK GG L Sbjct: 180 LTTGQLAQLAAQAV-RTRERGQDPATRTFQAIRIFINRELEEISAVLPQAAGYLKTGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+VK+F S + ++ S + I K + + A N Sbjct: 239 AVIAFHSLEDRIVKQFIRRHSRPTPLPKWVMVRESERPEPPLREI-GKAQRASAAETAAN 297 Query: 304 RRSRSAKLRAGMRTVERSIED 324 R+RSA LR RT ++ Sbjct: 298 PRARSAVLRVAERTAGEFADE 318 >gi|28897226|ref|NP_796831.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus RIMD 2210633] gi|153839039|ref|ZP_01991706.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810] gi|260366064|ref|ZP_05778530.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030] gi|260878319|ref|ZP_05890674.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034] gi|260896408|ref|ZP_05904904.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus Peru-466] gi|260899187|ref|ZP_05907582.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037] gi|33301414|sp|Q9AJH1|RSMH_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13537263|dbj|BAB40616.1| hypothetical protein [Vibrio parahaemolyticus] gi|28805435|dbj|BAC58715.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747467|gb|EDM58415.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810] gi|308087564|gb|EFO37259.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus Peru-466] gi|308093183|gb|EFO42878.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034] gi|308107133|gb|EFO44673.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037] gi|308111365|gb|EFO48905.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030] Length = 316 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 170/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV+ R++ + Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L G Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|15900265|ref|NP_344869.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae TIGR4] gi|111657194|ref|ZP_01407969.1| hypothetical protein SpneT_02001591 [Streptococcus pneumoniae TIGR4] gi|262827209|sp|P0CB58|RSMH_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14971807|gb|AAK74509.1| yllC protein [Streptococcus pneumoniae TIGR4] Length = 316 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQACLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVVRKI 314 >gi|24375712|ref|NP_719755.1| S-adenosyl-methyltransferase MraW [Shewanella oneidensis MR-1] gi|30173050|sp|Q8E9P0|RSMH_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24350646|gb|AAN57199.1|AE015855_10 conserved hypothetical protein TIGR00006 [Shewanella oneidensis MR-1] Length = 313 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 170/314 (54%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ +F + F QL DYV D +DGV+ DLGVSS Q+D +RGF Sbjct: 60 AIEAAKQF--ADDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+ + +A ++D+ + GEEK A IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+DL+ LI + + +K HPATR FQA+RI++N+E++++ Q L A L G Sbjct: 178 FLRTKDLADLIAR-ITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK+F S + + + + K ++P+ E++ Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIER 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NARARSSVLRIAER 310 >gi|83592294|ref|YP_426046.1| s-adenosyl-methyltransferase MraW [Rhodospirillum rubrum ATCC 11170] gi|123753270|sp|Q2RVT6|RSMH_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83575208|gb|ABC21759.1| methyltransferase [Rhodospirillum rubrum ATCC 11170] Length = 326 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 137/324 (42%), Positives = 193/324 (59%), Gaps = 16/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 M++ + H PV+L++V++ L P + +D TFG GGYSR + VIA+DRD Sbjct: 1 MNA-----LTPHFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERADCRVIAIDRD 55 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRG 124 P A G ++ +F+L F ++ +DGV DLGVSSMQ+D +RG Sbjct: 56 PAARVRGAALEAEFPGRFTLLSGCFGDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERG 115 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQK GPLDMRM G +A+D+VN + L IL GEE+++ +AHAIV+RR P Sbjct: 116 FSFQKDGPLDMRMGQQGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAETP 175 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL+++I+ V S++ I PATRSFQALRI VN+E+ EL + L ++E+ L+AGG Sbjct: 176 FSRTADLATVIRGVVRKSRDG-IDPATRSFQALRIVVNDELGELERALGASERLLRAGGR 234 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQE 298 L+VV+FHSLEDR+VK F R G+ V +P P FQ+++++ V P Sbjct: 235 LVVVAFHSLEDRIVKAFVRQRCGESEGVSRHLPQASNAGAGNPPPSFQAVSRRAVKPLDA 294 Query: 299 DVAFNRRSRSAKLRAGMRTVERSI 322 + N RSRSA+LRA RT + Sbjct: 295 ETRVNPRSRSARLRAVERTEFPAW 318 >gi|312871981|ref|ZP_07732063.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2062A-h1] gi|311092558|gb|EFQ50920.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2062A-h1] Length = 315 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 1 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|226323690|ref|ZP_03799208.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758] gi|225207874|gb|EEG90228.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758] Length = 311 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H VLL++ I LN P + +D T G GG++ + I +D+D A+ Sbjct: 1 MAFKHKSVLLDETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLNNKGSFIGIDQDAAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D+ E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D DRGFS++ Sbjct: 61 AAGTRLSDFGERVTIIRSNYCDMKSRLHEKGIDKVDGIVLDLGVSSYQLDTADRGFSYRV 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM SA ++VN + DL RI+ GE+K A IA IV R+ P +TT Sbjct: 121 DAPLDMRMDTRQTLSAKEIVNGYSEMDLFRIIRDYGEDKFAKNIAKHIVMAREKGPIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I++++ + HPA R+FQA+RI N E+E L L L GG + + Sbjct: 181 GQLAEIIRQSIPMKFQKMSGHPAKRTFQAIRIECNRELEVLRDSLDDMIDILNPGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + ITKK ++P++E++ N RS Sbjct: 241 ITFHSLEDRIVKGIFKKNENPCTCPSTFPVCVCGKVSKGKVITKKPILPSEEEMEVNSRS 300 Query: 307 RSAKLRAGMRT 317 +SAKLR R Sbjct: 301 KSAKLRIFERV 311 >gi|90020487|ref|YP_526314.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40] gi|123277667|sp|Q21MH7|RSMH_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89950087|gb|ABD80102.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40] Length = 312 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 170/311 (54%), Gaps = 12/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + L P +D TFG GG+SR+ + +D+DP AV+ Sbjct: 2 NESPHFSVLLQESVESLVVDPAGTYVDGTFGRGGHSRAILAKLGPEGKLFGIDKDPEAVA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 G+ + +F + +F+ L+ G+ GV+ DLGVSS Q+D +RGFS Sbjct: 62 VGKA-LEAEDSRFRIVHGSFADLKHIDLLQADFAAGGLSGVLVDLGVSSPQLDVAERGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM+ G++A++ +N A +D+ ++L GEE+ + +A AIV+RR+ PF Sbjct: 121 FMNDGPLDMRMNTEAGMTAAEWINTAKQEDIAQVLWEYGEERFSRHMAKAIVERREIKPF 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T D + +++ + + HPATR+FQA+RIF+N E+E+L Q L + L GG Sbjct: 181 TRTHDFAEVVKAANRKWEKGK-HPATRAFQAVRIFINRELEDLRQLLDDSVSVLAPGGRF 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFHSLEDR+VK+FF +S + + + I K + ++ N R Sbjct: 240 VVISFHSLEDRMVKRFFRDQSMGKQFPKGLPVTEEMKKQNLKIIGKALKAGDTELTQNIR 299 Query: 306 SRSAKLRAGMR 316 SRSA +R G R Sbjct: 300 SRSAVMRVGER 310 >gi|59712816|ref|YP_205592.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri ES114] gi|68565406|sp|Q5E2P2|RSMH_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|59480917|gb|AAW86704.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Vibrio fischeri ES114] Length = 316 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 18/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 HV VLL + I L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +F++ FS L+ YV + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAKTI---TDPKFTIIHGPFSGLKQYVEELDLVGKIDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR---RQSA 183 K GPLDMRM + GI S + +A+V+D+T ++ GE+K A RIA IV ++ Sbjct: 119 MKDGPLDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYLENEENE 178 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T L+ LI + S + HPATR+FQA RI++N+E++E+ L+ A L G Sbjct: 179 PLTRTSQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299 L V+SFHSLEDR+VK F S + + K + PT+ + Sbjct: 239 RLSVISFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 V N RSRS+ LR R Sbjct: 299 VNENVRSRSSVLRIAER 315 >gi|227327098|ref|ZP_03831122.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 314 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 176/314 (56%), Gaps = 18/314 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS + +YV + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AARAI---DDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A L G L V Sbjct: 180 TKELAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F +S + + +++ KK ++P++E+VA Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEEEVAE 297 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 298 NPRARSSVLRFAER 311 >gi|317046889|ref|YP_004114537.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b] gi|316948506|gb|ADU67981.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b] Length = 313 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 121/315 (38%), Positives = 172/315 (54%), Gaps = 15/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNALNIREDGIYIDGTFGRGGHSRLILAQLGANGQLLAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++ +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEIK---DSRFSIVHGPFSALAEYVSERGLNGKIDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI++N+E+EE+ L+ A L GG L Sbjct: 179 RTKELAEVI-AAATPVKDKFKHPATRSFQAIRIWINSELEEIDIALKGALSVLAPGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFN 303 V+SFHSLEDRLVK+F +S + + + T +VP +VA N Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTETQLKALGGRELKTLGKMVPGDAEVADN 297 Query: 304 RRSRSAKLRAGMRTV 318 R+RS+ LR RT Sbjct: 298 PRARSSVLRIAERTA 312 >gi|311280938|ref|YP_003943169.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1] gi|308750133|gb|ADO49885.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1] Length = 313 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A + Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPEATA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS L DY ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDPRFSIVHGPFSALADYAAERSLTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L + Sbjct: 180 TKELAEVI-AAATPVKDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLDVLAPGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDR+VK+F +S + + Q ++P +E+VA N Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGKLMPGEEEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRIAERTNA 313 >gi|254292761|ref|YP_003058784.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814] gi|254041292|gb|ACT58087.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814] Length = 336 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 138/334 (41%), Positives = 191/334 (57%), Gaps = 9/334 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + G H+PVLLE V+ L P G+V +D T+G GGYSR+ V+A+DRDP A+ Sbjct: 1 MTQE-GTHIPVLLEPVVEALAPTDGRVYIDGTYGGGGYSRAVMAVADCTVLAVDRDPDAM 59 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + F +L + VDGV+ DLGVSS QID +RGFSF Sbjct: 60 QRAWDH-AGKDPRLKPAPGRFGELDLAARAAGHEYVDGVMLDLGVSSYQIDQAERGFSFM 118 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G SA+D VN + KDL I GEE + RIA IVKRR F T Sbjct: 119 RDGPLDMRMEQHGPSAADAVNLLSEKDLASIFHFYGEEPASRRIAKFIVKRRDEEKFTRT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL++LI+ +V + + HPATR FQALR++VN+E+ EL + L ++E+ + +GG L+VV Sbjct: 179 LDLANLIESSVGGRRGKKTHPATRVFQALRLYVNDELGELVRALVASEEIITSGGRLVVV 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F R G + P F+ + +K + PT E+VA N RS Sbjct: 239 TFHSLEDRIVKTFLRERGGAMGGGSRHAPEAPAGKSPTFELVARKAIDPTDEEVAGNPRS 298 Query: 307 RSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 RS+KLR +RT + + S ++ R+P+L Sbjct: 299 RSSKLRWAIRTDAPTWGEKSGLN-SRIPSLDVLE 331 >gi|168490031|ref|ZP_02714230.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195] gi|182683307|ref|YP_001835054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14] gi|221231213|ref|YP_002510365.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC 700669] gi|298230654|ref|ZP_06964335.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str. Canada MDR_19F] gi|262827179|sp|B8ZL51|RSMH_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827224|sp|B2ISQ2|RSMH_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182628641|gb|ACB89589.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14] gi|183571591|gb|EDT92119.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195] gi|220673673|emb|CAR68164.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC 700669] gi|332075180|gb|EGI85650.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA17570] Length = 316 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLRETGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVVRKI 314 >gi|154494023|ref|ZP_02033343.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC 43184] gi|154086283|gb|EDN85328.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC 43184] Length = 308 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 161/309 (52%), Gaps = 17/309 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 + HVPV+L + + L+ P V +D TFG GG+SR + D+D A Sbjct: 4 KEVCYHVPVMLHESLEGLDIQPSGVYVDVTFGGGGHSREILNRLNDEGELYGFDQDADAE 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 +F ++ F L +++ VDG++ DLGVSS D DRGFSF Sbjct: 64 KN-----IPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G +A+D+VN + L + + GE K A ++A +V+ R+ + Sbjct: 119 RFDGALDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIE 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T D +I+ + K+ + FQALRI VN+E+ L + L+ + LK GG L+ Sbjct: 179 TIADFLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLV 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDRLVK F + + + A + + P F+ + KV+VP+ E++ N RS Sbjct: 237 VITYHSLEDRLVKNFLKTGNFEGKAEQDFFGNIRSP--FRLVNNKVIVPSDEEIERNPRS 294 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 295 RSAKLRIAE 303 >gi|253583641|ref|ZP_04860839.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725] gi|251834213|gb|EES62776.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725] Length = 313 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 169/317 (53%), Gaps = 13/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M I H+PVL + I L + LD T G GG+S K +I++D Sbjct: 1 MEEIISE---YHIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISID 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 +D A+ ++ + Y ++ +F+ F L + +DG++ D+GVSS Q+D + Sbjct: 58 QDQQAIDFAKKRLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPE 117 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS++ LDMRM+ + SA +VVN+ + + L +IL GEE+ + RIA I + R+ Sbjct: 118 RGFSYRYDTKLDMRMNQNNSLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEARE 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT +L ++I++ + + HPA ++FQA+RI VN E+E L + + A +LK Sbjct: 178 IKKIETTGELVAIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKI 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L +++FHSLEDRLVK F + I A + ITKK ++P +V Sbjct: 236 GGRLGIITFHSLEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEV 295 Query: 301 AFNRRSRSAKLRAGMRT 317 FN R+ S+KLR R Sbjct: 296 EFNNRAHSSKLRVVERI 312 >gi|59801880|ref|YP_208592.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA 1090] gi|268601983|ref|ZP_06136150.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|268604315|ref|ZP_06138482.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|268687198|ref|ZP_06154060.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] gi|293398479|ref|ZP_06642657.1| methylase MraW [Neisseria gonorrhoeae F62] gi|68565408|sp|Q5F6K7|RSMH_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|59718775|gb|AAW90180.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268586114|gb|EEZ50790.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|268588446|gb|EEZ53122.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|268627482|gb|EEZ59882.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] gi|291610950|gb|EFF40047.1| methylase MraW [Neisseria gonorrhoeae F62] Length = 318 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 171/324 (52%), Gaps = 15/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS A H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGA---ESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +I AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V ++ PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S + ++ + + + + P + + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGR-ALKPGEAE 294 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 +A N R+RSA LR RT E Sbjct: 295 IAANPRARSAVLRVAERTAGPIPE 318 >gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246] gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246] Length = 307 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTTKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K + + + IT K + P+ ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKEDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|332076775|gb|EGI87237.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA17545] Length = 316 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217] gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217] Length = 330 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 139/321 (43%), Positives = 200/321 (62%), Gaps = 6/321 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG 74 H+PVLL ++A + P V LD T GAGGY+R + G+ V+ +DRDP A+ Sbjct: 9 NTAPHIPVLLRPLLAAVAPVR-GVWLDGTLGAGGYARGLLEAGADQVVGVDRDPLALEMA 67 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E +Y ++ L Q F+Q+ DY D +DGVV DLGVSSMQ+D +RGFSF + GPLD Sbjct: 68 REWGAEYGDRLRLVQGNFAQMDDYAAD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLD 125 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G +A+D+VN + +L IL + GEE+ + RIA AIVK R+ P ++T L+ + Sbjct: 126 MRMSQDGPTAADLVNTTDEAELADILYLYGEERASRRIARAIVKAREVTPIESTLQLTGI 185 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ + SK + H ATRSFQA+RI VN+E L +GL +AE+AL+ GG L VV+FHS+E Sbjct: 186 VERCLPRSKPGQAHVATRSFQAIRIAVNDEYGSLIEGLEAAERALRPGGQLAVVTFHSIE 245 Query: 255 DRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F RS G RH F ++K + P +++A N R+RSA+LR Sbjct: 246 DRMVKRFMQLRSGGGGTGSRHAPEIEREAPQFSLKSRKAIGPDDDELAVNPRARSARLRV 305 Query: 314 GMRTVERSIEDD-SFVHLPRL 333 +RT R+ + S + +P L Sbjct: 306 AVRTDVRAGRTERSQLGMPML 326 >gi|224536607|ref|ZP_03677146.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus DSM 14838] gi|224521698|gb|EEF90803.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus DSM 14838] Length = 306 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 161/315 (51%), Gaps = 16/315 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 ++ + HVPVLL+ + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MNEELTYHVPVLLKPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A F ++ F L + Y + VD ++ DLGVSS D +RGFS Sbjct: 61 AEQN-----IVDNPHFIFVRSNFRYLHNFLRYHDIEEVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G +A+D++N + + L I + GE K + ++A +VK R Sbjct: 116 FRFDGALDMRMNKRAGDTAADIINTYDEERLADIFYLYGELKNSRKLASVLVKARAGQKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 TTIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNMMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPR 291 Query: 306 SRSAKLRAGMRTVER 320 SRSAKLR + E Sbjct: 292 SRSAKLRIAEKKGEE 306 >gi|157803594|ref|YP_001492143.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str. McKiel] gi|167011837|sp|A8EYC5|RSMH_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157784857|gb|ABV73358.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str. McKiel] Length = 308 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 121/303 (39%), Positives = 178/303 (58%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 H+PV+L +++A L P GK LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MQQSHIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++Y +F + F+ + +K DG+V DLGVSSMQ+D DRGFSF PLD Sbjct: 61 ERIKQNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDSPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + +N K+L I+ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAKRIVEYRKTARINSTGKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI++N+E+ EL + L + + L G L++VSFHSLE Sbjct: 181 VRNSI-GFRKGKIDPATKTFQAIRIYINDELRELERFLANVQNILNKDGRLVIVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A P + IT K P+ ++V N R+RSAKL Sbjct: 240 DRIVKHFFKENSEKPVARSKYSKDNPVIDPNKWLKIITNKAEAPSDKEVELNVRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|323491037|ref|ZP_08096229.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG 20546] gi|323314701|gb|EGA67773.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG 20546] Length = 316 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 114/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLDENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y D VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIIHGPFSGMAEYAADYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + GI S + +A++ D+T ++ GE+K RIA AIV R++ Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHVRRIAKAIVAYRENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++++V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSADLKPVGKAIKPSKQEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EHNARSRSSVLRIAEK 315 >gi|184155045|ref|YP_001843385.1| cell division protein [Lactobacillus fermentum IFO 3956] gi|227514829|ref|ZP_03944878.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260663589|ref|ZP_05864478.1| methylase MraW [Lactobacillus fermentum 28-3-CHN] gi|263458139|sp|B2GB73|RSMH_LACF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183226389|dbj|BAG26905.1| cell division protein [Lactobacillus fermentum IFO 3956] gi|227086819|gb|EEI22131.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260551815|gb|EEX24930.1| methylase MraW [Lactobacillus fermentum 28-3-CHN] Length = 314 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + +A L P V +DAT G GG+S K ++ + D+D A+ Q Sbjct: 5 NHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQA 64 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + +L Q F L+ + D+ +DG+V+DLGVSS Q D RGFS+Q Sbjct: 65 NLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA VVN+ + ++L RIL GEEK A +IA AI + RQ P QTT + Sbjct: 125 PLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTME 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++++ + ++ + HPA +SFQA+RI VN+E+ L L A LK GG + V++ Sbjct: 185 LANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK F S + + F+ I KK V+PT++++ N R+ S Sbjct: 245 FQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQPDFKLINKKPVLPTEDELKVNHRAHS 304 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 305 AKLRVIER 312 >gi|253689961|ref|YP_003019151.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum PC1] gi|262824751|sp|C6DEV1|RSMH_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|251756539|gb|ACT14615.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 176/314 (56%), Gaps = 18/314 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS + +YV + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAKAI---DDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A L G L V Sbjct: 180 TKELAELI-AAASPVREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F +S + + +++ KK ++P++ +VA Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAE 297 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 298 NPRARSSVLRFAER 311 >gi|306821091|ref|ZP_07454707.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550784|gb|EFM38759.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 309 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H VLL + + LN G +DATFG GG+S +N + D+D A+ G Sbjct: 4 NHKSVLLYETVDSLNVKEGNTYVDATFGGGGHSGYLLSKANNINLYVFDQDEEAIKNGMN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ + ++ + + + DLGVSS Q+D +RGFS+ PL Sbjct: 64 NFAG-NNNIHFINTNFVNIKSALYERKITKIDGLIADLGVSSYQLDNAERGFSYMNDAPL 122 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A DVVN + + L+ I+ GEE A +IA IV RR TT +L Sbjct: 123 DMRMDKNSPLTAYDVVNNYSKEQLSDIIRRYGEENWADKIAQVIVDRRGQKSIDTTFELV 182 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ HPA R+FQA+RI VNNEI+ L + L A + L +GG L V++FH Sbjct: 183 DVIEKAIPKKLRDKNKHPAKRTFQAIRIEVNNEIKILEKFLCDAFELLSSGGRLSVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK F G + + ITKK +VP+ E++ N RSRSAK Sbjct: 243 SLEDRAVKNIFKELVGGCICPKEFPICMCNRKEEATIITKKPIVPSDEELKNNPRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVIEKI 309 >gi|119512962|ref|ZP_01632023.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414] gi|119462375|gb|EAW43351.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414] Length = 302 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HVPVL ++V+ L PG LDAT G GG+SR + + + A+D+D A+ Q+ Sbjct: 15 HVPVLSQEVVEGLAVRPGGHYLDATVGGGGHSRLILEAATDVRLTAIDQDEDALGAAQKH 74 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ ++ + FS + DG++ DLGVSS +D +RGFSF+ + LDMRM Sbjct: 75 LAEFGDRVEFIHSNFSAYK--YSPNTFDGILADLGVSSYHLDQPERGFSFRHAANLDMRM 132 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +A+DV+N+ + +L I GEE+ + RIA IV+ + TT+ ++ Sbjct: 133 NQQQSLTAADVINEWDEAELADIFFKYGEERLSRRIARRIVE--KRPFETTTELAEAIAY 190 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + RIHPATR FQALRI VN+E++ L L A AL GG + ++SFHSLEDR Sbjct: 191 SVPRQYRYGRIHPATRVFQALRIVVNDELKALETFLDQAPNALVPGGRIAIISFHSLEDR 250 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK + S + + +TKK + +E++A N RSRSAKLR R Sbjct: 251 PVKHGLRNSS-----------------LLKVLTKKPITAKEEELANNPRSRSAKLRIAQR 293 Query: 317 TV 318 Sbjct: 294 VD 295 >gi|50122745|ref|YP_051912.1| S-adenosyl-methyltransferase MraW [Pectobacterium atrosepticum SCRI1043] gi|54036180|sp|Q6D0H5|RSMH_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49613271|emb|CAG76722.1| S-adenosyl-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 314 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 18/314 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS + DYV + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAKAI---DDSRFSIIHGPFSAMADYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P Sbjct: 120 RDGPLDMRMDPTRGSSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+SLI + HPATRSFQA+RI++N+E+EE+ + L A L G L V Sbjct: 180 TKELASLI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F +S + + + + KK ++P++ +VA Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKPVGKK-LMPSEAEVAE 297 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 298 NPRARSSVLRFAER 311 >gi|315038044|ref|YP_004031612.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL 1112] gi|312276177|gb|ADQ58817.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL 1112] gi|327183324|gb|AEA31771.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus amylovorus GRL 1118] Length = 315 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG++R +I D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKS 60 Query: 74 GQETMRD-----YKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L F+ LQ + G+DG+ +DLGVSS Q D DRG Sbjct: 61 AKLNFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L IL G+EK + +IA IV+RR+ Sbjct: 121 FSYRYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIARKIVERRKDK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQALR+ VN+E++ L L A K L+ G Sbjct: 181 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + + +K + + ++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEK 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|168486616|ref|ZP_02711124.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1087-00] gi|168490752|ref|ZP_02714895.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC0288-04] gi|183570380|gb|EDT90908.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1087-00] gi|183574822|gb|EDT95350.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC0288-04] gi|301801259|emb|CBW33934.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV200] gi|327390750|gb|EGE89090.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA04375] Length = 316 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVVRKI 314 >gi|255010082|ref|ZP_05282208.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis 3_1_12] gi|313147877|ref|ZP_07810070.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12] gi|313136644|gb|EFR54004.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12] Length = 304 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 I HVPVLL++ + +N P +D TFG GG+SR G ++ D+D A Sbjct: 5 EITYHVPVLLKESVDAMNITPDGTYVDVTFGGGGHSREILSRLGNGGRLLGFDQDEDA-- 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E F+ ++ F L + Y +GVD ++ DLGVSS D +RGFSF+ Sbjct: 63 ---ERNIVNDPHFTFVRSNFRYLHNFLRYHDIEGVDSILADLGVSSHHFDDSERGFSFRF 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ GI+A+DVVN + L I + GE K + ++A IVK R +T Sbjct: 120 DGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARSGQKIETI 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+ Sbjct: 180 GEFLEVVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + + + P F+ + KV+VP +E++A N RSRS Sbjct: 238 TYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEEEIARNPRSRS 295 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 296 AKLRIAEK 303 >gi|153814616|ref|ZP_01967284.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756] gi|145848110|gb|EDK25028.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756] Length = 311 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +HV VLL + + LN V +DAT G GG++ C+ I +D+D A+ Sbjct: 1 MAFEHVSVLLNETVDGLNVKLDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ + E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D +RGFS++ Sbjct: 61 AAGERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRV 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN+ + +L R++ GE+K A IA IV R+ P +TT Sbjct: 121 DAPLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVAERRKNPIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I + + HP+ R+FQA+RI +N+E++ L + L + L GG + + Sbjct: 181 GQLNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F H + + IT+K ++P++ + N RS Sbjct: 241 ITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str. Iowa] gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa] Length = 307 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K + + + IT K + P+ ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|319407511|emb|CBI81159.1| S-adenosyl-methyltransferase [Bartonella sp. 1-1C] Length = 349 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 163/325 (50%), Positives = 212/325 (65%), Gaps = 3/325 (0%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PVLL+ V+A L P G ++D TFGAGGYS + G+ VIALDRDP A+ GQ Sbjct: 25 VERHIPVLLQSVLAELAPLAGAKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + L QA FSQL D++ ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMR Sbjct: 85 LVDQFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A+DVVN DL ++ GEE+ A RIA I KRR PF T DL+ I+ Sbjct: 144 MGQIGFTAADVVNYLRADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIE 203 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR Sbjct: 204 SLIGRKLGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAGGRLAVVSFHSLEDR 263 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VKKFF++RSG R++ + PA F + K V PTQE++ N R+RSA+LR G+R Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQHNPRARSARLRMGVR 323 Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341 T E +I D + L L + +F G Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346 >gi|312873217|ref|ZP_07733273.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2052A-d] gi|312874604|ref|ZP_07734628.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2053A-b] gi|325911728|ref|ZP_08174135.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D] gi|311089834|gb|EFQ48254.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2053A-b] gi|311091228|gb|EFQ49616.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2052A-d] gi|325476494|gb|EGC79653.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 3 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 63 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 243 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 302 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 303 NNRSHSAKLRVAEK 316 >gi|170728860|ref|YP_001762886.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908] gi|262826580|sp|B1KKY5|RSMH_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169814207|gb|ACA88791.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908] Length = 313 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 118/317 (37%), Positives = 172/317 (54%), Gaps = 14/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + +A LN + +D TFG GG+SR K +IA+DRDP Sbjct: 1 MSQEFA-HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ D + FS+ F QL YV + +DGV+ D GVSS Q+D +RGF Sbjct: 60 AIEAAKQFADDAR--FSIVHGGFGQLATYVEELGLKGKIDGVLLDFGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+D + +A V+D+ + GEEK + IA I R+ P Sbjct: 118 SFLRDGPLDMRMDNSQGETAADWLARAEVEDMAWVFKTYGEEKNSRHIARCIAADREKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T++L+ LI + + SK HPATR FQA+RI++N+E+E++ Q L A L G Sbjct: 178 FLRTKELADLIAR-ISKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F S + + A + + K + P+ E++ Sbjct: 237 LSVISFHSLEDRMVKRFIRRHSQGESVPHGLPITEAEINKTRLLKGVGKAIKPSDEEIER 296 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR R Sbjct: 297 NTRARSSVLRVAQRLEH 313 >gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis HTCC2503] gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis HTCC2503] Length = 331 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 138/319 (43%), Positives = 201/319 (63%), Gaps = 7/319 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL+ VI L+P PG++++D TFGAGGY+R + G+ +IA DRDP A++ G+ R Sbjct: 5 HQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGATIIAFDRDPTAIAAGRSLER 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + +L +A FS L + ++GVVFD GVSSMQ+D +RGFSF+ GPLDMRM Sbjct: 65 ECGDALTLVEAPFSALAE-HVAPPINGVVFDFGVSSMQLDRPERGFSFRAEGPLDMRMG- 122 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G A+D VNQA L + GEE+++ +A IV +R++ PF+TT L+++ + + Sbjct: 123 AGRPAADFVNQAEEAALADVFYHYGEERRSRALARRIVAQRETTPFETTAQLAAVAEAVL 182 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRI VN+E+ E+ + L +AEK L GG L+ VSFHSLEDR+VK Sbjct: 183 GT--RDKIHPATRMFQALRILVNDELGEIVRALIAAEKVLAEGGRLVAVSFHSLEDRIVK 240 Query: 260 KFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +FF G+ A RH P + F + K + + ++A N R+RSA+LRAG+RT Sbjct: 241 RFFQVTEGRAQTASRHEPPVDKILPRFAPL-GKALSADEAEIAGNPRARSARLRAGVRTA 299 Query: 319 ERSIE-DDSFVHLPRLPTL 336 + ++ + LP L Sbjct: 300 APPTDWTEAALAQLGLPAL 318 >gi|310779075|ref|YP_003967408.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926] gi|309748398|gb|ADO83060.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926] Length = 314 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 169/306 (55%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVL + I L G V LD T G GG+S K +I++D+D A+ Sbjct: 9 YHIPVLYRETIENLVKNEGGVYLDCTLGGGGHSEGILKALSEKGKLISIDQDQQALDFAG 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y +++ ++ F L + +DG++ D+GVSS Q+D +RGFS++ Sbjct: 69 ERLGKYGKKWESYKDNFENLDTVLYLAGYDKIDGILMDIGVSSTQLDDPERGFSYRFDTK 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + +SA +VVNQ L++I+ GEE+ A +IA I + R P +TT DL Sbjct: 129 LDMRMNKNAKVSAYEVVNQYEEGRLSKIIYDYGEERHARKIARLICEIRAEKPIETTGDL 188 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + HPA ++FQA+RI VN E++ L + + A ALK GG L +++FH Sbjct: 189 VEIIKRAYKG--KSPKHPAMKTFQAIRIEVNRELDVLERSIDKAINALKPGGRLAIITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F S + + + A + IT+K + P +++ FN+R+RS+K Sbjct: 247 SLEDRMVKNKFKEMSVDCICPPELPVCRCDNKAKVKIITRKPITPKDDELKFNKRARSSK 306 Query: 311 LRAGMR 316 LR R Sbjct: 307 LRVVER 312 >gi|149001556|ref|ZP_01826529.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS69] gi|149006085|ref|ZP_01829814.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP18-BS74] gi|237649375|ref|ZP_04523627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI 1974] gi|237821592|ref|ZP_04597437.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI 1974M2] gi|147760014|gb|EDK67003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS69] gi|147762441|gb|EDK69402.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP18-BS74] Length = 316 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYRDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVVRKI 314 >gi|332982167|ref|YP_004463608.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON] gi|332699845|gb|AEE96786.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON] Length = 312 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 168/307 (54%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PVL+E+V+ ++ G + +D T G GG++ C+ +I +D+D A++ Sbjct: 5 YHKPVLVEEVMQYMSCRKGGIYIDGTIGGGGHALEICRRIDGDGLLIGIDKDDEALAHAA 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ET+++Y L + F ++ V VDGV+ DLGVSS Q+D RGFS+ Sbjct: 65 ETLKEYSSCVRLIKGDFRYMKALVNGIEVNEVDGVLLDLGVSSHQLDDAGRGFSYNAEAV 124 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +A DVVN + K L I+ GEE+ A RIA IVK RQ P +TT L Sbjct: 125 LDMRMDKQQLLTAKDVVNTYDEKRLYEIIKDYGEERWAKRIASFIVKERQRYPIETTGQL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + + + HPA R+FQA+RI VN+E+ + +GL A LK GG L V+SF Sbjct: 185 VEVIKRAIPAAARREGPHPARRTFQAIRIEVNDELNSIKEGLIQAMDCLKPGGRLCVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRLVK F + + V +TKK V+ T ++V N R+RSA Sbjct: 245 HSLEDRLVKDTFRRWQNPCTCPPDTPLCVCGNKPVAAIVTKKPVIATPDEVESNPRARSA 304 Query: 310 KLRAGMR 316 KLR + Sbjct: 305 KLRVCEK 311 >gi|325912968|ref|ZP_08175341.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B] gi|325477648|gb|EGC80787.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 3 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 63 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 243 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 302 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 303 NNRSHSAKLRVAEK 316 >gi|298531025|ref|ZP_07018426.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira thiodismutans ASO3-1] gi|298509048|gb|EFI32953.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira thiodismutans ASO3-1] Length = 319 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 180/320 (56%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M + H PV+LEKV+ LL PAPG LD T G GG+S + K +++ +D Sbjct: 1 MQAQ-ELADYTHQPVMLEKVLELLAPAPGGRYLDGTLGLGGHSLAILKACKGECSILGMD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 D A+ E + + + + Q F Q+Y+ + G+DG + DLG+SS+Q+D + Sbjct: 60 MDQEALELVAENLEEQQGGLHMVQDAFHNFQEYLQELQWPGLDGALLDLGMSSLQLDKKE 119 Query: 123 RGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +GFSF GPLDMRM + AS +V A+ L +I+ LGEE A RIA AI++ R Sbjct: 120 KGFSFIHDGPLDMRMGLAQGFPPASSLVQNASFSRLKQIIYELGEEPMAPRIARAIIQAR 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + +P TT +L+ ++++ + R HPAT++FQALR+ N E+E L L Sbjct: 180 EKSPINTTLELARIVEQAYPAQRRRAARNHPATKTFQALRMATNKELESLQDFLEKIAPW 239 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQ 297 L+ G L+V+SFHSLEDR+VK++ ++ + + S +H + +T+K + ++ Sbjct: 240 LRPGARLVVISFHSLEDRMVKQYLRRQASDCICPPRSPVCSCSHRKTLEILTRKPLTASE 299 Query: 298 EDVAFNRRSRSAKLRAGMRT 317 +++ N RSRSAKLRA R Sbjct: 300 REISRNPRSRSAKLRAAQRV 319 >gi|227113994|ref|ZP_03827650.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 314 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 18/314 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS + +YV + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAKAI---DDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A L G L V Sbjct: 180 TKELAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F +S + + +++ KK ++P++ +VA Sbjct: 239 ISFHSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAE 297 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 298 NPRARSSVLRFAER 311 >gi|162447417|ref|YP_001620549.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] gi|263433262|sp|A9NFP3|RSMH1_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|161985524|gb|ABX81173.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] Length = 299 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 168/304 (55%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + I LN P + +DAT G GG+S K ++ A D+D +A+ E Sbjct: 2 KHISVLLNESIEGLNIKPNGIYVDATLGGGGHSLEILKKLDKGHLYAFDQDAYAIGRATE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + Q+ FS +++ + + VDG++FDLG+SS QID RGFS+ K L Sbjct: 62 RLKDFSNK-TFIQSNFSFIKEKLNELGIYQVDGIIFDLGLSSFQIDDETRGFSYLKDYDL 120 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A ++VN + L I G+E+ A +IA IV RR P TT +L Sbjct: 121 DMRMNKDATLTAKEIVNTYERQKLADIFRAYGDEENAWKIAGMIVDRR---PLNTTLELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + +K + H A R FQALRI VN E+E L + L SA + L GG L +++F S Sbjct: 178 EITDIA---NKGMKGHSAKRVFQALRIEVNKELEVLERALNSALELLNIGGRLSIITFQS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED++VK F+ + S +++ + IT+K V+P++ ++ N RSRSAKLR Sbjct: 235 LEDKMVKSFYKTHSQMD-YPKNIDIRTFPKPPLKIITRKPVLPSEIELEHNSRSRSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 IAEK 297 >gi|218296762|ref|ZP_03497468.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23] gi|218242851|gb|EED09385.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23] Length = 286 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 181/308 (58%), Gaps = 25/308 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M + +H+PVL ++ + LL PG+V +DAT G G++R + G VIALD+DP Sbjct: 1 MEAT-----TEHIPVLYQEALDLLRVQPGQVYVDATLGGAGHTRGILERGGRVIALDQDP 55 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV + + ++ + V G++ DLGVSS ++ RGFS+Q Sbjct: 56 EAVERAKALSHPNLLAYRANFRHLKEVLKEAGVEEVAGILADLGVSSFHLEDPRRGFSYQ 115 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G +A +VVN ++DL RIL LGEE+QA RIA AIV+ R+ A +TT Sbjct: 116 QEGPLDMRMGLEGPTAEEVVNTLPLEDLYRILRDLGEERQAYRIAKAIVEARRKARIRTT 175 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ V F HPA ++FQALRI+VN+E+ L + LR AE+ L GG L+V+ Sbjct: 176 TELAEIVRRAVGF--RAAGHPARKTFQALRIYVNDELNALEEFLRQAEEVLAPGGRLVVI 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDR+VK+F + + +TKK + P+QE++A N R+RS Sbjct: 234 AFHSLEDRIVKRFLRE------------------SRLKVLTKKPLTPSQEEMAKNPRARS 275 Query: 309 AKLRAGMR 316 AKLRA + Sbjct: 276 AKLRAAEK 283 >gi|157963630|ref|YP_001503664.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345] gi|262826529|sp|A8H992|RSMH_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157848630|gb|ABV89129.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345] Length = 315 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P + +D TFG GG+SR + +IA+DRDP A++ + Sbjct: 6 EHLSVLLAETVAGLNIRPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F + F QL DYV D +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 66 QFKDDSR--FQIVHGGFGQLADYVEDLGLKGQIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+ + +A ++D+ + GEEK + IA I R+ APF T+D Sbjct: 124 PLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKD 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALAVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F S + + A + + K + P+ E+V N R+RS Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEAEINKSRKLKAMGKAIKPSVEEVERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|188532894|ref|YP_001906691.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99] gi|263447020|sp|B2VD83|RSMH_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188027936|emb|CAO95793.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99] Length = 313 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 121/317 (38%), Positives = 179/317 (56%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H H VLL++ + LN + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 HDTFKHTTVLLDEAVNGLNIKSDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFTIIHGPFSALAEYAEERGLKGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALTAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 ++SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQIPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|253998164|ref|YP_003050227.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4] gi|253984843|gb|ACT49700.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4] Length = 321 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 13/311 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV VLLE+ +A L P + +D TFG GG+SR + ++ LDRD AVS Sbjct: 13 VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +FS+ FS+L + + VDGV+ DLG+SS QID G+RGFSF+ Sbjct: 73 ARSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTT 188 GPLDMRM G +A++ + +A+ + LT ++ GEE+ A ++A AIV R TT Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGDALTTT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + + PATR+FQALRIF+N E+EEL+ L AL GG L V+ Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F S + + + + K + P+ ++ N RSR Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308 Query: 308 SAKLRAGMRTV 318 SA LR RT Sbjct: 309 SAVLRVAERTE 319 >gi|256545404|ref|ZP_05472767.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC 51170] gi|256398965|gb|EEU12579.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC 51170] Length = 306 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 161/306 (52%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K +I LD+D A+ +E Sbjct: 5 HKSVLLNETIENLNIKEDGIYADLTLGKGGHSKEILKKLSPNGLLIGLDQDKDAIKAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ F F +++ + + G + + + D+GVSS QID GDRGFS+ K GPL Sbjct: 65 NLKDFSNVL-YFNENFENIENVLDEAGFNRIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A +VN ++ +L +I GEE+ + IA AIV R+ TT L Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWKIFSEYGEERYSKTIAKAIVDYRKMHEINTTLQLR 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ K+V S+ HP R FQALRI VN E+E L L L G L V++FHS Sbjct: 184 NIVMKSVNTSEA---HPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKNGRLCVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S K + H + I+KK ++P+++++ N RS SAKL Sbjct: 241 LEDRIVKNKFKEMSKKCICPPDFPVCVCNHEKKVKLISKKPILPSKDELKNNNRSHSAKL 300 Query: 312 RAGMRT 317 R R Sbjct: 301 RVCERI 306 >gi|241895696|ref|ZP_04782992.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871063|gb|EER74814.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 314 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T HV VLL + I LN P V +DAT G GG+S+ + + D+D A++ Sbjct: 2 TEFKHVTVLLREAIDGLNVQPDGVYVDATLGGGGHSKLLASRLSTGKLWSFDQDETAITY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128 QE + D + + Q F L D + + V +V+DLGVSS Q D G RGFS+ Sbjct: 62 NQEHLADEIAAGKVAFIQDNFRHLHDALMAEDVSTIDGIVYDLGVSSPQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM ++A VVN+ + +L RI GEEK A +IA I R+ P +T Sbjct: 122 YDAPLDMRMDQSQSLTARTVVNEWSFHELLRIFSRYGEEKFAKQIARKIEHEREIKPIET 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L ++I+ ++ ++ HPA R+FQA+RI VN+E+ + + L A L G + Sbjct: 182 TFELVNIIKDSIPAAARRKGGHPAKRTFQAIRIAVNDELGAVEESLAQALDMLNVHGRIA 241 Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDRLVK F + S + I F+ + +K ++P+ E++A NRR Sbjct: 242 VITFHSLEDRLVKTMFKEKVSIPDLPAGLPIIPEEMQPDFKLVVRKPILPSDEELATNRR 301 Query: 306 SRSAKLRAGMRTV 318 + SAKLR R Sbjct: 302 AHSAKLRIIERIK 314 >gi|259416349|ref|ZP_05740269.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B] gi|259347788|gb|EEW59565.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B] Length = 329 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 150/330 (45%), Positives = 198/330 (60%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+ G HVPVLL+ ++ + P LD TFGAGGY++ G+ VI +DRD Sbjct: 1 MTDRTAAPSGPHVPVLLKPLLEAVAPV-TGRWLDGTFGAGGYTKGLLAAGAEQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q+ +Y + L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQDWAEEYGARLVLQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+V + L IL GEE+ + RIA AIV+ R P T Sbjct: 118 MKDGPLDMRMSQDGSSAADLVAELTEVQLADILYSFGEERASRRIAKAIVRERALEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+ K P P+ F+ +T+K V P ++++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRFAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 RSA LR G RT +E + +P+L Sbjct: 298 RSALLRVGRRTDAAPVEITAKELSMPQLKE 327 >gi|294674965|ref|YP_003575581.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23] gi|294473982|gb|ADE83371.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23] Length = 304 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 163/312 (52%), Gaps = 16/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I HVPVLL + I L G + +D TFG GG+S+ + +++ + D+DP Sbjct: 2 ITTAETYHVPVLLHESIDGLAIKSGGIYVDVTFGGGGHSKEILRRLDEKAHLYSFDQDPD 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFS 126 A ++F+ ++ F L++++ GVD + + DLGVSS D RGFS Sbjct: 62 AEKN-----IVNDDRFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM+ G +A++++N + + L I I GE K A +IA I K R Sbjct: 117 FRFDAPLDMRMNKRAGTTAAEILNTYDEEQLADIFYIYGELKNARKIASIIAKTRNEKKI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT DL S +K F + + FQALRI VN+E++ L + L A+ L GG L Sbjct: 177 ETTGDLMSATEK--LFQREREKKEMAKMFQALRIEVNHEMDALKEMLNGAKDLLGEGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+++HSLEDR+VK + + + + P F+ I KV+VP+ E+ N R Sbjct: 235 SVITYHSLEDRIVKNMMKAGNVEGKIKQDFFGRIEAP--FRLINNKVIVPSDEEQQQNPR 292 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 293 SRSAKLRIAEKI 304 >gi|308185651|ref|YP_003929782.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea vagans C9-1] gi|308056161|gb|ADO08333.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea vagans C9-1] Length = 313 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 172/318 (54%), Gaps = 19/318 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGRLIAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFSIIHGPFSALAEYVAERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + A D+ +L GEE+ + RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFSKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L Sbjct: 179 RTRELAEVI-SVAMPVKDKFKHPATRSFQAIRIWINSELEEIDIALKGAVEVLAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F +S + + + + K + P +V+ Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEVS 295 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RS+ LR +T Sbjct: 296 ENPRARSSVLRIAEKTDA 313 >gi|313200234|ref|YP_004038892.1| s-adenosyl-methyltransferase mraw [Methylovorus sp. MP688] gi|312439550|gb|ADQ83656.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. MP688] Length = 321 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 119/310 (38%), Positives = 170/310 (54%), Gaps = 13/310 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV VLLE+ +A L P + +D TFG GG+SR + ++ LDRD AVS Sbjct: 13 VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q +FS+ FS+L + + VDGV+ DLG+SS QID G+RGFSF+ Sbjct: 73 AQSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTT 188 GPLDMRM G +A++ + +A+ + LT ++ GEE+ A ++A AIV R TT Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGNALTTT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + + PATR+FQALRIF+N E+EEL+ L AL GG L V+ Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F S + + + + K + P+ ++ N RSR Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308 Query: 308 SAKLRAGMRT 317 SA LR RT Sbjct: 309 SAVLRVAERT 318 >gi|114330281|ref|YP_746503.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91] gi|123321952|sp|Q0AJD3|RSMH_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114307295|gb|ABI58538.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91] Length = 317 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 113/318 (35%), Positives = 176/318 (55%), Gaps = 18/318 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + LN G + +D T+G GG+SR +IA D+DP A+S + Sbjct: 1 MHISVLLEEAVDALNIQKGGIYVDGTYGRGGHSRLILSRLDKSGQLIAFDKDPAAISEAR 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + E+F ++++ + + VDG++ DLGVSS+Q+D RGFSF+ GP Sbjct: 61 SIL---DERFQAVHSSYAGMYTALQSLGINRVDGILLDLGVSSIQLDEASRGFSFRHDGP 117 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + A+ +L I+ GEE+ A +IA AIV + P TT L Sbjct: 118 LDMRMDSSRGKTAAEWLTMASETELKEIIRTYGEERYAGQIASAIVMEQARQPISTTLRL 177 Query: 192 SSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ V +++R HPATR+FQA+RI +N E+EEL+ L + L GG L+V+S Sbjct: 178 AEIVAAVVRKRGHRDDRQHPATRTFQAIRIHLNQELEELSMTLPQCVELLNTGGRLVVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-----HPAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK+F ++G R + + + I KK + P ++V+ N Sbjct: 238 FHSLEDRIVKRFMRMQTGTDTLPRRLPIREEESRLHNQQKLRIIGKK-IRPGSDEVSANP 296 Query: 305 RSRSAKLRAGMRTVERSI 322 R+RSA +R + R+ Sbjct: 297 RARSAVMRVAEKLETRNA 314 >gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish 7] gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7] Length = 307 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 182/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E + Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K + + + IT K + P+ ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|149201994|ref|ZP_01878968.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035] gi|149145042|gb|EDM33071.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035] Length = 330 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 148/322 (45%), Positives = 197/322 (61%), Gaps = 6/322 (1%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73 + H+PVLL +IA + P V LD T GAGGY+R+ G+ VI +DRDP A Sbjct: 8 KSNAPHIPVLLRPLIAAVAPVQ-GVWLDGTLGAGGYARALLDAGADQVIGVDRDPLAHDM 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q +Y ++ L F+Q+ DY D +DGVV DLGVSSMQ+D +RGFSF K GPL Sbjct: 67 AQGWGAEYGDRLRLVLGNFAQMDDYATD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPL 124 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D+VN A DL IL + GEE+ + RIA AIVK R AP +TT L+ Sbjct: 125 DMRMSQEGPSAADLVNTAEESDLADILYLYGEERASRRIARAIVKARTEAPIETTLHLAG 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI++ + SK + H ATRSFQA+RI VN+E L GL +AE+ALK GG L VV+FHS+ Sbjct: 185 LIERCLPRSKPGQAHAATRSFQAIRIAVNDEYGALIAGLEAAERALKEGGQLAVVTFHSI 244 Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+F +RS G RH F ++K + P E++A N R+RSA+LR Sbjct: 245 EDRIVKRFLTARSGGGGTGSRHAPEITREEPQFTLKSRKAIGPDDEELAVNPRARSARLR 304 Query: 313 AGMRTVERSIEDD-SFVHLPRL 333 RT + + + + + +P L Sbjct: 305 VATRTDAPAGQSERAALGVPML 326 >gi|149914518|ref|ZP_01903048.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b] gi|149811311|gb|EDM71146.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b] Length = 331 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 142/326 (43%), Positives = 194/326 (59%), Gaps = 6/326 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPF 69 + H+PVLL ++ + P V +D T GAGGY+R + G+ VI +DRDP Sbjct: 5 AQAPDPSAPHIPVLLRPLLEAVAPVE-GVWIDGTLGAGGYTRGLLEAGAQTVIGVDRDPL 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ Y ++ L Q FS + + D VDGVV DLGVSSMQ+D +RGFSF + Sbjct: 64 ALEMAALWGAAYGDRLVLVQDIFSNMDAHASD--VDGVVLDLGVSSMQLDRAERGFSFMR 121 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G +A+D+VN A+ +L IL + GEE+ + RIA AI++ R S TT Sbjct: 122 DGPLDMRMSQQGPTAADLVNTADEGELADILYLYGEERASRRIARAILRERASGDIDTTL 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + K ++HPATRSFQALRI VN+E EL GL +AE+ALK GG L VV+ Sbjct: 182 HLARIIESCLPRPKPGQVHPATRSFQALRIAVNDEFGELVAGLEAAERALKPGGKLAVVT 241 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+EDR+VK+F ++S G RH PA F +K + P + ++A N RSRS Sbjct: 242 FHSIEDRMVKRFLQAKSAGGGGGSRHAPAMRPEPAEFDVTQRKAIGPDKSELAENPRSRS 301 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRL 333 AKLR +RT + D + +P L Sbjct: 302 AKLRVAIRTDAAATPADRKAIGMPLL 327 >gi|300361452|ref|ZP_07057629.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03] gi|300354071|gb|EFJ69942.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03] Length = 315 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H VLL + I LNP + +DATFG GG++R + VI D+D +A+S Sbjct: 1 MKFKHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISM 60 Query: 74 GQETMRDY-----KEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E+ + + + L F L+ + G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKESFAEELKPGAEPKLILVHDNFCHLKKNLVELGISDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L+ IL G+EK + +IA IV RR+ Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT DL +I+ + + + HPA +SFQA+R+ VNNE+ L + L A K L+ G Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + I++K ++ + +++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|227524041|ref|ZP_03954090.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088780|gb|EEI24092.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 315 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 10/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 5 KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R Y ++ +L F ++ + D+ +DG+V+DLGVSS Q D RGFS++ Sbjct: 65 HLRQYVENDKLTLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM A V+N+ + L RI GEEK + +IA I + R+ P TT D Sbjct: 125 HLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +LI++ + ++ + HPA + FQA+RI VN+E+ L L + + L GG + V++ Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK F ++ ++ ++ IT+K ++P ++++A N R+ S Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNHRAHS 304 Query: 309 AKLRAGMRTV 318 AKLR RT Sbjct: 305 AKLRIIERTK 314 >gi|315653716|ref|ZP_07906636.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners ATCC 55195] gi|315489078|gb|EFU78720.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners ATCC 55195] Length = 315 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 167/314 (53%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K S ++I D+D +A+ Sbjct: 1 MEFKHYSVLLHETIDNLNLKSDGVYVDATFGGGGHASYLLKQLSNVHLIGFDQDEYAIEL 60 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 121 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 181 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F SLED++VKK F S + ++ + I++K +V T +++ Sbjct: 241 GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|310642996|ref|YP_003947754.1| ribosomal RNA small subunit methyltransferase h [Paenibacillus polymyxa SC2] gi|309247946|gb|ADO57513.1| Ribosomal RNA small subunit methyltransferase H [Paenibacillus polymyxa SC2] Length = 316 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 170/315 (53%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H+ VL E+ LN + +D T G G+S +IA D+D +A++ Sbjct: 1 MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---------KGVDGVVFDLGVSSMQIDCGDRG 124 +E + Y+ + SL ++ F LQD + + V G++FDLGVSS Q D G+RG Sbjct: 61 AREKLSAYEGKISLVKSNFRHLQDKLAELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S +A ++VN+ ++ RIL GEEK + RIA +V+RR + Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWPEAEIARILFQYGEEKFSRRIAKIMVERRMNK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + + HPA RSFQALRI VN+E+ L L A + L G Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDTLHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K F K + + + + + +K +V +++++ Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILDDKMVGDLKLVNRKPIVASEQELE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 301 LNPRSRSAKLRVAEK 315 >gi|304396555|ref|ZP_07378436.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB] gi|304356064|gb|EFM20430.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB] Length = 313 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 172/318 (54%), Gaps = 19/318 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L Sbjct: 179 RTRELAEVISIA-MPVKDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F +S + + + + K + P +V+ Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEVS 295 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RS+ LR +T Sbjct: 296 ENPRARSSVLRIAEKTDA 313 >gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b] gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b] Length = 308 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 173/310 (55%), Gaps = 10/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 + H PVL ++V+ + V +D T G GG++ + S V+A+D+D A+ Sbjct: 1 MEYHKPVLFDEVMDNIITDKDAVYVDCTLGGGGHTEGILENSSKNSKVVAIDQDVQAIEF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y + +FQ F + V + VD ++ D+GVSS Q+D RGFS++ Sbjct: 61 AKKRLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRILMDIGVSSNQLDNAKRGFSYRFE 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ISA +V+N + K+L I+ GEE ++ +IA IV+ R+ +TT Sbjct: 121 ARLDMRMDSNLKISAYEVINNFSEKELADIIYKYGEEPKSRKIAKKIVEYRKIKAIETTT 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++ K++ K+ + HPA R+FQA+RIFVN E+E L++ L A K L G L+V++ Sbjct: 181 ELADIVIKSIG--KSMKRHPAKRTFQAIRIFVNKELEILSETLDKAVKLLGKNGKLLVIT 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F I ++ + ITKK +V + ++A N R+ S Sbjct: 239 FHSLEDRIVKEKFREYENPCTCPPDIPICVCGKQSLGKVITKKPIVAKELELAENNRAHS 298 Query: 309 AKLRAGMRTV 318 AKLR R+ Sbjct: 299 AKLRIFERSE 308 >gi|298377152|ref|ZP_06987106.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19] gi|298266136|gb|EFI07795.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19] Length = 305 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 165/307 (53%), Gaps = 17/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPV+L + + L+ P + +D TFG GG+S K + + D+D A Sbjct: 8 YHVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSCEILKRLGSEGELYGFDQDADA----- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F+ ++ F L +++ VDG++ DLGVSS D DRGFSF+ G Sbjct: 63 EHNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 123 ALDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGD 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++ Sbjct: 183 FLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAK Sbjct: 241 HSLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAK 298 Query: 311 LRAGMRT 317 LR + Sbjct: 299 LRIAEKV 305 >gi|160946332|ref|ZP_02093541.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270] gi|158447448|gb|EDP24443.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270] Length = 310 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 164/310 (52%), Gaps = 8/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 +H+P++L +VI L+ P + +D T G G+S K +I +D+D A+S Sbjct: 1 MEFNHIPIMLNEVIDNLDIKPNGIYVDLTVGGAGHSTEILKRIKNGKLICVDQDEEALSV 60 Query: 74 GQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + +++ F + DY VDGV+ D+GVSS QID G RGFS+ Sbjct: 61 ARDRLLKISDNVLFYKSNFENFKEILDYFGIDKVDGVLLDIGVSSYQIDNGQRGFSYMID 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM SA DVVN N +DL I GEEK RI IV R+ +TT Sbjct: 121 APLDMRMDRDLKKSAFDVVNYYNSEDLEYIFYNYGEEKWTKRIVEFIVNYRKEKLIETTF 180 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN E+E + + + + L G L ++ Sbjct: 181 ELVDIIERAIPKAVRAKGGHPAKRVFQAIRIEVNRELEVIKKVIPDIVERLNKNGRLCII 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + + + + + +TKK +VP++E++ N RS+ Sbjct: 241 TFHSLEDRIVKDSFKELARGCICPKELYVCVCNNKPKIKILTKKPLVPSEEEMNRNPRSK 300 Query: 308 SAKLRAGMRT 317 S+KLR + Sbjct: 301 SSKLRICSKI 310 >gi|49084936|gb|AAT51240.1| PA4420 [synthetic construct] Length = 314 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D Sbjct: 1 MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121 +DP A+ G+ + +F + Q +F++L D V + VDGV+ DLGVSS Q+D Sbjct: 56 KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RR Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF+ T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + + + K ++E Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA +R + Sbjct: 294 ELKANPRSRSAVMRVAEK 311 >gi|20139121|sp|Q9AJG9|RSMH_VIBPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13537266|dbj|BAB40618.1| hypothetical protein [Vibrio proteolyticus] Length = 316 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 114/316 (36%), Positives = 168/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ESFQHISVLLHESIEGLAIKPDGIYIDGTFGRGGHSRTILSQLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y VDGV+FDLGVSS Q+D +RGFSF Sbjct: 63 EAKTI---DDPRFTIVHGPFSGIAHYAKQHGLAGKVDGVLFDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R++ + Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A + L G Sbjct: 180 LKRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAEILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESQGPQVPHGIPMTEAQIQALGSANMKAIGKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 ELNPRSRSSVLRIAEK 315 >gi|254230425|ref|ZP_04923805.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|262395267|ref|YP_003287121.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|151937058|gb|EDN55936.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|262338861|gb|ACY52656.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] Length = 316 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 166/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---NDPRFTIIHGPFSGIAEYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R+ + Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EMNPRSRSSVLRIAEK 315 >gi|116629844|ref|YP_815016.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus gasseri ATCC 33323] gi|238853964|ref|ZP_04644321.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4] gi|311110516|ref|ZP_07711913.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22] gi|122273218|sp|Q042P4|RSMH_LACGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116095426|gb|ABJ60578.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus gasseri ATCC 33323] gi|238833409|gb|EEQ25689.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4] gi|311065670|gb|EFQ46010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22] Length = 315 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H VLL + I LNP + +DATFG GG++R + VI D+D +A+S Sbjct: 1 MKFKHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISM 60 Query: 74 GQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E+ + + + L F L++ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKESFAEELKPGAEPKLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L+ IL G+EK + +IA IV RR+ Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT DL +I+ + + + HPA +SFQA+R+ VNNE+ L + L A K LK G Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + I++K ++ + +++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|282851645|ref|ZP_06261010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1] gi|282557613|gb|EFB63210.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1] Length = 315 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H VLL + I LNP + +DATFG GG++R + VI D+D +A+S Sbjct: 1 MKFKHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISM 60 Query: 74 GQETMRDY-----KEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 +E+ + + + L F L++ G+DG+ +DLGVSS Q D +RG Sbjct: 61 AKESFAEELKPGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L+ IL G+EK + +IA IV RR+ Sbjct: 121 FSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT DL +I+ + + + HPA +SFQA+R+ VNNE+ L + L A K LK G Sbjct: 181 PIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + I++K ++ + +++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEE 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|90423689|ref|YP_532059.1| methyltransferase [Rhodopseudomonas palustris BisB18] gi|123275305|sp|Q216E6|RSMH_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|90105703|gb|ABD87740.1| methyltransferase [Rhodopseudomonas palustris BisB18] Length = 330 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 144/328 (43%), Positives = 197/328 (60%), Gaps = 8/328 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PVL ++ + LL P G V +DATFGAGGYS + VI +DRD A++ G + Sbjct: 5 SRHIPVLGQEAVGLLAPRDGGVYVDATFGAGGYSGLILAAADTRVIGIDRDRTAIAGGFD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +L + FS L + +G DGVV D+GVSSMQ+D +RGFSF+ +GPL Sbjct: 65 LVERSGGRLTLVEDRFSNLAEVCAAQGAGLVDGVVMDVGVSSMQLDQSERGFSFRLAGPL 124 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM SG SA+DV+ A+ +L I+ I GEE+ + +A AIV R P TT+ L+ Sbjct: 125 DMRMGQSGPSAADVIAVASEAELANIIYIFGEERHSRAVARAIVAARAIEPITTTRALAD 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K V+ K IHPATR+FQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSL Sbjct: 185 IVGKVVHA-KPGEIHPATRTFQGLRIFVNGELDELHLALSAAERVLKPGGRLVVVSFHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK FF +R RH+ + F +TK+ + +++A N R+RSAKLRA Sbjct: 244 EDRIVKNFFNARGKTGGGSRHLPELDQEAPSFAILTKRPITAGPDELAGNPRARSAKLRA 303 Query: 314 GMRTVERSIEDDSFVHLPRLPTLSQFRG 341 G RT + + LP PTL G Sbjct: 304 GERTAALAHPGED---LPAWPTLDAVMG 328 >gi|332991932|gb|AEF01987.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas sp. SN2] Length = 313 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 181/313 (57%), Gaps = 15/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV 71 + HV VLL++ I L P + +DATFG GG+S + +IA DRDP A+ Sbjct: 4 SSEFKHVSVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGSDGTLIAFDRDPQAI 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + F + + F + + + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 64 EAAKRFADDSR--FRIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSF 121 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA+D + +A +D+T+++ GEEK RIAHAIV R++ P Sbjct: 122 LRDGPLDMRMDTSRGESAADWLARAEEQDITQVIKEFGEEKFGKRIAHAIVNTRETTPIT 181 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L++LI + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L Sbjct: 182 RTAQLAALIDEAV-PVKDKFKHPATRAFQGIRIYINAELEQLRTGLKAATQVLAKEGRLA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDRLVK+F +S ++ + A V +++++ + P++ ++A N Sbjct: 241 VISFHSLEDRLVKRFIKDQSKGKSVPHNLPITQAEIDADKVLKALSR-AIKPSELEIANN 299 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 300 VRSRSSVLRVAEK 312 >gi|227509375|ref|ZP_03939424.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191087|gb|EEI71154.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 315 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 10/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 5 KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R Y ++ +L F ++ + D+ +DG+V+DLGVSS Q D RGFS++ Sbjct: 65 HLRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM A V+N+ + L RI GEEK + +IA I + R+ P TT D Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +LI++ + ++ + HPA + FQA+RI VN+E+ L L + + L GG + V++ Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK F ++ ++ ++ IT+K ++P ++++A N R+ S Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNHRAHS 304 Query: 309 AKLRAGMRTV 318 AKLR RT Sbjct: 305 AKLRIIERTK 314 >gi|292490616|ref|YP_003526055.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4] gi|291579211|gb|ADE13668.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4] Length = 317 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 181/316 (57%), Gaps = 10/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H PVLL +VI L + +DATFG GG++++ ++ +D Sbjct: 1 MAPMDEKETLTHQPVLLREVIQALAIRRDGLYVDATFGRGGHAQAILDALSSEGRLLGVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 +DP A++ G+ + +FS+ QA+ +L V ++ V+GV+FDLGVSS Q++ Sbjct: 61 KDPEAIAAGR-ILAQQDRRFSIVQASIGELARVVAEQGWLKRVNGVLFDLGVSSPQLENA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF + GPLDMRM+ + G SA++ + A K++ +L GEE+ RIA AIV+ R Sbjct: 120 KRGFSFLQDGPLDMRMNPAVGQSAAEWLASATEKEIAAVLKTYGEERFCRRIARAIVQAR 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + P T+ L+ ++ K + R HPATRSFQA+RIF+NNE+EEL L A L Sbjct: 180 EINPLTRTKQLAEVVAKANPSWEPGR-HPATRSFQAIRIFINNELEELRAALEQAVTVLA 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L+V+SFHSLEDR+VK+FF +S + H + K++ PT E+V Sbjct: 239 VKGRLVVISFHSLEDRMVKRFFRQKSRGEDLPPDLPVMQDHFQASLQVLGKLIWPTPEEV 298 Query: 301 AFNRRSRSAKLRAGMR 316 + N R+RSA+LR + Sbjct: 299 SRNPRARSARLRVAEK 314 >gi|91228506|ref|ZP_01262428.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01] gi|269967393|ref|ZP_06181453.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B] gi|91187940|gb|EAS74250.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01] gi|269827981|gb|EEZ82255.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B] Length = 316 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 166/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P V +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---NDPRFTIIHGPFSGIAEYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + G+ S + +A++ D+T ++ GE+K A RIA AIV R+ + Sbjct: 120 KDGPLDMRMDPTSGVPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EMNPRSRSSVLRIAEK 315 >gi|310765090|gb|ADP10040.1| S-adenosyl-methyltransferase MraW [Erwinia sp. Ejp617] Length = 313 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 180/317 (56%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN P + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA++ + +A D++ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040] gi|123378785|sp|Q1GF19|RSMH_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|99038135|gb|ABF64747.1| methyltransferase [Ruegeria sp. TM1040] Length = 329 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 150/330 (45%), Positives = 202/330 (61%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+ G H+PVLL+ ++A + P LD TFGAGGY++ G+ VI +DRD Sbjct: 1 MTDRTAAPSGPHIPVLLKPLLAAVAPV-TGRWLDGTFGAGGYTKGLLAAGADQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q +Y ++ L Q FS++ +Y + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQPWAAEYGDRLVLQQGVFSRMDEYAQE--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+V + + L +L GEE+ + RIA AIVK R P T Sbjct: 118 MKEGPLDMRMSQDGPSAADLVAELSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLRLAEIIEGCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+ K A R+ P+ F+ +T+K V P ++++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRYAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 RSA LR G RT +E + +P+L Sbjct: 298 RSALLRVGRRTDAAPVEITAKELSMPQLKE 327 >gi|84516398|ref|ZP_01003757.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53] gi|84509434|gb|EAQ05892.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53] Length = 326 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 147/315 (46%), Positives = 200/315 (63%), Gaps = 10/315 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 MS+A T H+PVL+ +IA + P V LD TFG GGY+R+ G++ VIA+DRD Sbjct: 1 MSAAADQT--PHIPVLIRPLIAAVGPV-TGVWLDGTFGNGGYTRALLAAGAHKVIAVDRD 57 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + DY ++ + + FSQL Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 58 PLAFQMAAGWVADYGDRIVMQEGVFSQLDTYAQD--LDGVVLDLGVSSMQLDLAERGFSF 115 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG+SA+D+ N A +L I+ + GEE+ + RIA AIV R P T Sbjct: 116 MRDGPLDMRMSQSGLSAADLCNDAEEAELADIIYLYGEERASRRIAKAIVAAR---PLTT 172 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++ + +K N+ HPATR+FQALRI VNNE ELA GL +AE+ALK GG L V Sbjct: 173 TGQLAKIVESCLPRAKPNQSHPATRTFQALRIAVNNEYGELAMGLMAAERALKPGGQLAV 232 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+ K+F +RSG A R+ + F+ +K + P ++++A N RS Sbjct: 233 VTFHSVEDRMAKRFLQARSGNNANANRYAPETTQVTPAFRIDKRKAIGPDEQELAENPRS 292 Query: 307 RSAKLRAGMRTVERS 321 RSAKLR +RT + Sbjct: 293 RSAKLRVAIRTDAPA 307 >gi|256850925|ref|ZP_05556314.1| MraW methylase [Lactobacillus jensenii 27-2-CHN] gi|260661139|ref|ZP_05862053.1| MraW methylase [Lactobacillus jensenii 115-3-CHN] gi|282934162|ref|ZP_06339440.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|297205805|ref|ZP_06923200.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16] gi|256615987|gb|EEU21175.1| MraW methylase [Lactobacillus jensenii 27-2-CHN] gi|260548076|gb|EEX24052.1| MraW methylase [Lactobacillus jensenii 115-3-CHN] gi|281301776|gb|EFA94042.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|297148931|gb|EFH29229.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16] Length = 317 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 167/314 (53%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 T H VLL + I LN + +DATFG GG++R + ++ D+D +A++ Sbjct: 3 TNFKHTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAINA 62 Query: 74 GQETMRD-----YKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + ++ Q + FS L D G+DG+ +DLGVSS Q D DRG Sbjct: 63 AKDNFSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPDRG 122 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM+ A VVN + L +L G+EK + +IA IV+RRQ Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQQK 182 Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L LI++ + +K HPA +SFQA+R+ VN+E++ L L+ A + L+ G Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLRPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + I + + + +K ++ T ++A Sbjct: 243 GRISVITFQSHEDKIVKKIFKENSEVDVPRGIPIIPDNLKPKLKLVNRKPILATASELAN 302 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 303 NNRSHSAKLRVAEK 316 >gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5] gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5] Length = 307 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MIQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E + Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF +GPLD Sbjct: 61 EEIQQSYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHNGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K + + + IT K + P+ ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|15599616|ref|NP_253110.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAO1] gi|107099995|ref|ZP_01363913.1| hypothetical protein PaerPA_01001016 [Pseudomonas aeruginosa PACS2] gi|254244769|ref|ZP_04938091.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391129|ref|ZP_06880604.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAb1] gi|20139184|sp|Q9HVZ5|RSMH_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9950652|gb|AAG07808.1|AE004856_19 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126198147|gb|EAZ62210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 313 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D Sbjct: 1 MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121 +DP A+ G+ + +F + Q +F++L D V + VDGV+ DLGVSS Q+D Sbjct: 56 KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RR Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF+ T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + + + K ++E Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA +R + Sbjct: 294 ELKANPRSRSAVMRVAEK 311 >gi|313673691|ref|YP_004051802.1| s-adenosyl-methyltransferase mraw [Calditerrivibrio nitroreducens DSM 19672] gi|312940447|gb|ADR19639.1| S-adenosyl-methyltransferase MraW [Calditerrivibrio nitroreducens DSM 19672] Length = 312 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 170/313 (54%), Gaps = 9/313 (2%) Query: 13 IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 + H + H+PVLLE+ + LN G V +D T G GG+S + + +I LDRDP Sbjct: 1 MAHKVEMAHIPVLLEEALHYLNVISGGVYVDCTGGGGGHSAAILEKINEGRLIILDRDPD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSF 127 A + + FS ++ + +G++ D GVSS QI RGFSF Sbjct: 61 ACERLFIRFKGVPN-VDIINDNFSNIEKILDSMGLKANGILADFGVSSFQISNTGRGFSF 119 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM +SA DVVN + + L I+ GE+ A RIA+ IVK R Sbjct: 120 RYDEPLDMRMDKKTDLSAYDVVNNLSQETLENIIKKYGEDPFAKRIAYVIVKYRNLKKIT 179 Query: 187 TTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT++L+ +I V + + IHPATR+FQA+RIFVN E+E + L+S E L + G Sbjct: 180 TTKELAEIIANAVPVKFHKKGIHPATRTFQAIRIFVNKELEAIESLLKSLENILVSKGRG 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +SFHSLEDR+VK F + + + I + F+ +TKK V+P++++V N Sbjct: 240 VFISFHSLEDRMVKDFLNYYAKQCICPPGQPICTCGKKQTFKVLTKKPVLPSKDEVIKNP 299 Query: 305 RSRSAKLRAGMRT 317 SRSAKLRAG R Sbjct: 300 YSRSAKLRAGERV 312 >gi|319639028|ref|ZP_07993786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria mucosa C102] gi|317399932|gb|EFV80595.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria mucosa C102] Length = 320 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 168/315 (53%), Gaps = 12/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + + L + +D TFG GG+SR ++ D+DP A++ Sbjct: 5 ENYQHVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++ S+ F Q + + +DG +FDLG+SS QID G RGFSF+ Sbjct: 65 VANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ L+ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V+ Sbjct: 184 RKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+F S R + ++ +++ K + P + N R+ Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSAETEANPRA 301 Query: 307 RSAKLRAGMRTVERS 321 RSA LR R+ Sbjct: 302 RSAVLRVAERSSGEF 316 >gi|259907409|ref|YP_002647765.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96] gi|224963031|emb|CAX54514.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96] gi|283477242|emb|CAY73151.1| S-adenosyl methionine adenyltransferase [Erwinia pyrifoliae DSM 12163] Length = 313 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 180/317 (56%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN P + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA++ + +A D++ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|256425920|ref|YP_003126573.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588] gi|256040828|gb|ACU64372.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588] Length = 302 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 160/312 (51%), Gaps = 17/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL++VI L P V +DATFG GG+SR+ + +I D+D Sbjct: 1 MEEASAYHLPVLLQEVITNLQIQPDGVYVDATFGGGGHSRAILEKLNENGRLIVFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A + R + + Q F LQ + VDG++ DLGVSS Q D +RGFS Sbjct: 61 AYNN-----RIDDPRVTFVQQNFRHLQRFLRLYKSVPVDGILADLGVSSWQFDTAERGFS 115 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM +A+ ++ + K+L + GE A +A IV+ R++ P Sbjct: 116 TRFDGDLDMRMDKRNALTAASLLQSSTEKELHLLFQNYGEVTNARTLAKTIVQERKARPM 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T + S+IQ V K N + FQALRI VN+E L L + + LK GG L Sbjct: 176 RTINEFKSVIQPIV---KGNPQKYLAQVFQALRIVVNDEFGALKDMLNQSAEVLKPGGKL 232 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDRLVK F +G+ A P +F+ +TKK V + E++ N R Sbjct: 233 AIITFHSLEDRLVKNFMK--TGQFEAQEDTFSYETPPKLFRLVTKKPVTASPEELKRNTR 290 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 291 SRSAKLRVAEKI 302 >gi|224826070|ref|ZP_03699173.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002] gi|224601707|gb|EEG07887.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002] Length = 320 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 176/321 (54%), Gaps = 12/321 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+ VLL + +A L P V +D TFG GG+SR ++A D+DP Sbjct: 1 MSAPVFSHLTVLLSEAVAALAVRPDGVYVDCTFGRGGHSRLILSQLGPAGRLVAFDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ E + +F+L F L D + VDGV+ DLGVSS QID RGFS Sbjct: 61 AIA-AGERLAAEDPRFTLVHEGFETLARELDRLGIARVDGVLMDLGVSSPQIDDARRGFS 119 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G++A++ + A +D+ ++ GEE+ A +IA AIV +R+ AP Sbjct: 120 FRFDAPLDMRMDTSRGLTAAEWLATAAEEDIREVIKTYGEERFARKIAAAIVAQRELAPL 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT+ L+ L+ + V + + PATR+FQA+RI++N E+EEL L A + L GG L Sbjct: 180 ETTRQLAQLVGQNVRTREPGQ-DPATRTFQAIRIYINRELEELKAVLPQAAQRLAEGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F S ++ ++ +++ K V + ++V N Sbjct: 239 AVISFHSLEDRIVKNFMRDASSDAKLPSWVMVRSADLPEPPLRTV-GKPVRASDDEVNGN 297 Query: 304 RRSRSAKLRAGMRTVERSIED 324 RSRSA +R RT E+ Sbjct: 298 PRSRSAIMRIAERTAGAWREE 318 >gi|22127508|ref|NP_670931.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM 10] gi|45443369|ref|NP_994908.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus str. 91001] gi|51595030|ref|YP_069221.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 32953] gi|108809545|ref|YP_653461.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Antiqua] gi|108810578|ref|YP_646345.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Nepal516] gi|150260418|ref|ZP_01917146.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125] gi|153947578|ref|YP_001402352.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 31758] gi|162419065|ref|YP_001607303.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola] gi|165928201|ref|ZP_02224033.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. F1991016] gi|165937803|ref|ZP_02226364.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. IP275] gi|166008805|ref|ZP_02229703.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. E1979001] gi|166212069|ref|ZP_02238104.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. B42003004] gi|167401265|ref|ZP_02306765.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422048|ref|ZP_02313801.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426442|ref|ZP_02318195.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470126|ref|ZP_02334830.1| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1] gi|170025741|ref|YP_001722246.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis YPIII] gi|186894036|ref|YP_001871148.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis PB1/+] gi|218927743|ref|YP_002345618.1| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92] gi|229837062|ref|ZP_04457227.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Pestoides A] gi|229840435|ref|ZP_04460594.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843023|ref|ZP_04463173.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. India 195] gi|229900770|ref|ZP_04515894.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Nepal516] gi|270487860|ref|ZP_06204934.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27] gi|294502635|ref|YP_003566697.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003] gi|20139012|sp|Q8ZIF7|RSMH_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85542907|sp|Q66EL3|RSMH_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122979342|sp|Q1C206|RSMH_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123246757|sp|Q1CMN5|RSMH_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504671|sp|A7FM74|RSMH_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504678|sp|B2K4D8|RSMH_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504680|sp|A9R132|RSMH_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504693|sp|B1JK89|RSMH_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21960606|gb|AAM87182.1|AE013965_9 putative apolipoprotein [Yersinia pestis KIM 10] gi|45438238|gb|AAS63785.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Yersinia pestis biovar Microtus str. 91001] gi|51588312|emb|CAH19920.1| S-adenosyl-dependent methyl transferase [Yersinia pseudotuberculosis IP 32953] gi|108774226|gb|ABG16745.1| hypothetical protein YPN_0413 [Yersinia pestis Nepal516] gi|108781458|gb|ABG15516.1| hypothetical protein YPA_3554 [Yersinia pestis Antiqua] gi|115346354|emb|CAL19226.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149289826|gb|EDM39903.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125] gi|152959073|gb|ABS46534.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 31758] gi|162351880|gb|ABX85828.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola] gi|165914215|gb|EDR32831.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. IP275] gi|165919812|gb|EDR37113.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. F1991016] gi|165992144|gb|EDR44445.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. E1979001] gi|166206815|gb|EDR51295.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. B42003004] gi|166960185|gb|EDR56206.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049290|gb|EDR60698.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054540|gb|EDR64348.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752275|gb|ACA69793.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis YPIII] gi|186697062|gb|ACC87691.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis PB1/+] gi|229682109|gb|EEO78201.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Nepal516] gi|229689899|gb|EEO81958.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. India 195] gi|229696801|gb|EEO86848.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706005|gb|EEO92014.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Pestoides A] gi|262360665|gb|ACY57386.1| S-adenosyl-methyltransferase [Yersinia pestis D106004] gi|262364611|gb|ACY61168.1| S-adenosyl-methyltransferase [Yersinia pestis D182038] gi|270336364|gb|EFA47141.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27] gi|294353094|gb|ADE63435.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003] gi|320016913|gb|ADW00485.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 320 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 176/323 (54%), Gaps = 19/323 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NNKTVDNNYKHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ ++ +FS+ FS L YV D +DG++ DLGVSS Q+D + Sbjct: 64 DPEAIEAAKQI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI ++ HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDR+VK F S + + A +S+ K ++P Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPG 297 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++A N R+RS+ LR R E Sbjct: 298 DAEIAENPRARSSVLRFAERIGE 320 >gi|298480587|ref|ZP_06998784.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22] gi|298273408|gb|EFI14972.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22] Length = 304 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 163/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N PG +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIQPGGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ GI+A+D+VN + L + + GE K + ++A IVK R + Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKARSGQNIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L++A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|261253815|ref|ZP_05946388.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891] gi|260937206|gb|EEX93195.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891] Length = 324 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 11 EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGDNGRLYSIDRDPQAIA 70 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 71 EAGKI---DDPRFTIIHGPFSGMAQYAAEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 127 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAP 184 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R ++ P Sbjct: 128 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G Sbjct: 188 MTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++++V Sbjct: 248 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEDQIKALGSANLKPVGKAIKPSKQEV 307 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 308 EENTRSRSSVLRIAEK 323 >gi|227512227|ref|ZP_03942276.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227084621|gb|EEI19933.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 315 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 10/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 5 KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R Y ++ SL F ++ + D+ +DG+V+DLGVSS Q D RGFS++ Sbjct: 65 HLRQYVENDKLSLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM A V+N+ + L RI GEEK + +IA I + R+ P TT D Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +LI++ + ++ + HPA + FQA+RI VN+E+ L L + + L GG + V++ Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK F ++ ++ ++ IT+K ++P ++++A N R+ S Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNHRAHS 304 Query: 309 AKLRAGMRTV 318 AKLR RT Sbjct: 305 AKLRIIERTK 314 >gi|260886497|ref|ZP_05897760.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|330839659|ref|YP_004414239.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|260863640|gb|EEX78140.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|329747423|gb|AEC00780.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] Length = 311 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H V+ E+ +A L P +D T G G++R +I LD+D A+ +E Sbjct: 5 HTSVMPEETLAALAVKPAGTYIDCTLGGAGHARRIADRLSPAGRLIGLDQDEAAIRAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + ++ F L + VDGV+FDLGVSS QID +RGFS+ + PL Sbjct: 65 RLANVSCRVDVVRSNFRALDSVLQSLGVTSVDGVLFDLGVSSHQIDTAERGFSYMQDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + SA +VVN+ + +L I GEE+ A RIA IV RQ P +TT +L Sbjct: 125 DMRMDTSRLLSAHEVVNEYDEAELWHIFRDYGEERWAKRIAEFIVAARQEKPIETTGELV 184 Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ + V + HPA R FQA+RI VN+E+ L + +A AL GG + V++F Sbjct: 185 DIVCRAVPKGVRRAAGGHPAKRIFQAIRIEVNDELGILQASVENAVHALAPGGRIAVLTF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ + + + H + + K P+ + A N R++SA Sbjct: 245 HSLEDRIVKQALKELARGCICPPGLPVCVCGHEPKVRLL-GKAQKPSAAEAAENPRAKSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVAEK 310 >gi|229552071|ref|ZP_04440796.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314504|gb|EEN80477.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 313 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D + VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S R + A +Q + +K ++P+ ++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAH 301 Query: 308 SAKLRAGMRTVE 319 SAKLR + Sbjct: 302 SAKLRVIEKIRN 313 >gi|260773502|ref|ZP_05882418.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14] gi|260612641|gb|EEX37844.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14] Length = 316 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 164/316 (51%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ESFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF Sbjct: 63 EASKI---DDPRFTIIHGPFSGIAEYAQRYNLQGQVDGVLFDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + G+S + + A + D+T ++ GE+K A RIA AIV R + Sbjct: 120 KDGPLDMRMDPNSGVSVAQWLLTAELDDITWVIREFGEDKHARRIAKAIVAHRDNPDNEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTSQLAKLISEAAPKSFKEKKHPATRTFQAFRIYINSELEEIDIALQGAASILAPQGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P+ +V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPDVPHGLPLTQDQIKALGSAKLKAIGKAIKPSDHEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 A N RSRS+ LR + Sbjct: 300 ALNPRSRSSVLRIAEK 315 >gi|254238917|ref|ZP_04932240.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126170848|gb|EAZ56359.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 313 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D Sbjct: 1 MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121 +DP A+ G+ + +F + Q +F++L D V + VDGV+ DLGVSS Q+D Sbjct: 56 KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RR Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF+ T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + + + K ++E Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA +R + Sbjct: 294 ELKANPRSRSAVMRVAEK 311 >gi|15606908|ref|NP_214289.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5] gi|8134826|sp|O67721|RSMH_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2984161|gb|AAC07695.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5] Length = 294 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 120/305 (39%), Positives = 177/305 (58%), Gaps = 22/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVLL + + L GK+ +D T G GG+++ K + +I +DRD A+ +E Sbjct: 5 HKPVLLRESVEFLTENGGKIYVDCTLGGGGHAKEILKKRKDIFLIGIDRDEEAIEIAKEN 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +FS+++A F L + + VDG +FDLGVS Q+ +RGF+FQ+ PLD Sbjct: 65 LKEFEGRFSIYKANFKDLDLVLKEEGIDKVDGFLFDLGVSMYQLKG-ERGFTFQEDQPLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +A VVN ++L RIL GEEK A RIA AIV+RR+ P +TT +L Sbjct: 124 MRMDKEQTLTACKVVNNYPERELIRILKEYGEEKFAVRIAKAIVQRRKKKPIETTGELVD 183 Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I V + K+ +IHPATR+FQA+RI VN E+E L + L + G L+V++FHS Sbjct: 184 VILSVVPEYYKHGKIHPATRTFQAIRIEVNKELESLKEALEKTPYHFNSKGRLVVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + + F+ ITKK V P++E++ N SRSAKLR Sbjct: 244 LEDRIVKHFIKEKEKEGI--------------FRIITKKPVTPSEEEIRENPASRSAKLR 289 Query: 313 AGMRT 317 + Sbjct: 290 VAEKI 294 >gi|218131855|ref|ZP_03460659.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697] gi|217986158|gb|EEC52497.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697] Length = 305 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 16/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A F+ ++ F L + Y + VD ++ DLGVSS D +RGFS Sbjct: 61 AEQN-----IVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G +A+D+VN + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T D +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 STIGDFLDIIKP--LFGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNIQTP--FRLVNNKVIVPDETEIERNPR 291 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 292 SRSAKLRIAEKIE 304 >gi|317474530|ref|ZP_07933804.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909211|gb|EFV30891.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA] Length = 305 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 16/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A F+ ++ F L + Y + VD ++ DLGVSS D +RGFS Sbjct: 61 AEQN-----IVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G +A+D+VN + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T D +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 STIGDFLDIIKP--LFGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDETEIERNPR 291 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 292 SRSAKLRIAEKIE 304 >gi|328471991|gb|EGF42868.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio parahaemolyticus 10329] Length = 316 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 169/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV+ R++ + Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L G Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A K + P++ ++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKHEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|218893511|ref|YP_002442380.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa LESB58] gi|262825031|sp|B7UZJ8|RSMH_PSEA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218773739|emb|CAW29553.1| putative methyltransferase [Pseudomonas aeruginosa LESB58] Length = 313 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 181/318 (56%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D Sbjct: 1 MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121 +DP A+ G+ + +F + Q +F++L D V + +DGV+ DLGVSS Q+D Sbjct: 56 KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRIDGVLLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RR Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF+ T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + + + K ++E Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA +R + Sbjct: 294 ELKANPRSRSAVMRVAEK 311 >gi|199598136|ref|ZP_03211558.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus rhamnosus HN001] gi|199590897|gb|EDY98981.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus rhamnosus HN001] Length = 313 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D + VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S R + A +Q + +K ++P+ ++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAH 301 Query: 308 SAKLRAGMRTVE 319 SAKLR + Sbjct: 302 SAKLRVIEKIRN 313 >gi|197334561|ref|YP_002157005.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11] gi|263504510|sp|B5FB43|RSMH_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|197316051|gb|ACH65498.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11] Length = 316 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 18/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 HV VLL + I L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +F++ FS L+ YV + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAKTI---TDPKFTIIHGPFSGLKQYVEELELVGKIDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF- 185 K GPLDMRM + GI S + +A+V+D+T ++ GE+K A RIA IV R++ Sbjct: 119 MKDGPLDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYRENEENE 178 Query: 186 --QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T L+ LI + S + HPATR+FQA RI++N+E++E+ L+ A L G Sbjct: 179 PLTRTSQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299 L V+SFHSLEDR+VK F S + + K + PT+ + Sbjct: 239 RLSVISFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 V N RSRS+ LR R Sbjct: 299 VDVNVRSRSSVLRIAER 315 >gi|257092216|ref|YP_003165857.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044740|gb|ACV33928.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 316 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 112/322 (34%), Positives = 175/322 (54%), Gaps = 18/322 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H VLL++ + L P +D TFG GG+SR+ + G ++A DRDP Sbjct: 1 MSQE-SPHQTVLLQEAVEALAIKPAGTYVDGTFGRGGHSRAILQRLGTGGRLLAFDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDR 123 AV+ + + + F L D + ++G+DGV+ D+GVSS Q+D R Sbjct: 60 AVAMAS---GETDARLLVMHERFGDLADALRRAGCAVEQGIDGVLLDIGVSSPQLDEHAR 116 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ PLDMRM G +A+ + +A+ +++T ++ GEE+ A +IA IV R Sbjct: 117 GFSFRGDAPLDMRMDTTQGETAAQWLGRASEQEITEVIRNYGEERFAFQIAKKIVAARGE 176 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TT +L++L+++TV + + ATR+FQALRI +N E+E+LA L A LKAG Sbjct: 177 RSVATTGELAALVRQTVRTREPGQ-DAATRTFQALRIHINQELEQLALVLPQAMTVLKAG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDV 300 G L+V+SFHSLEDR+VK+F + R + ++ P + I K V + ++ Sbjct: 236 GRLVVISFHSLEDRIVKRFLRDEAAPDRLPRKLPLRAADLPPPRLRLI-GKPVRASAAEI 294 Query: 301 AFNRRSRSAKLRAGMRTVERSI 322 A N R+RSA +R + ++ Sbjct: 295 AANPRARSAIMRVAEKLARKAA 316 >gi|154500741|ref|ZP_02038779.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC 29799] gi|150270630|gb|EDM97939.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC 29799] Length = 313 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 165/312 (52%), Gaps = 8/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + H PVLL++ I LN P +DAT G G+SR + +I +DRD A Sbjct: 1 MSEMEFSHKPVLLQECIDGLNIDPTGTYVDATLGRAGHSREIARRLTTGRLICIDRDQAA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + ++ +L F L D + + GV+ DLGVSS Q+D RGFS+ Sbjct: 61 LDAAPGRLEGLMDRVTLVHGNFGDLADILDRLKLDKLSGVLADLGVSSPQLDDASRGFSY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S +A VVN+ +++ RIL GEE+ A IA AIV+ R+ AP + Sbjct: 121 MADAPLDMRMDQSEALTARTVVNEWPQEEIRRILFQFGEERYAPAIAAAIVRAREKAPIE 180 Query: 187 TTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + + HPA RSFQA+RI VN+E+ + +++A AL GG L Sbjct: 181 TTLELVDIIRSAMPAHALCEKQHPAKRSFQAIRIAVNDELSAADKLIQAAVPALAPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++SFHSLEDR+VK FA+ + V + + KK +V +E++ N Sbjct: 241 AIISFHSLEDRIVKNAFAAFAKGCTCPPDFPVCVCGKKPVIRLVNKKPIVSGEEELNENA 300 Query: 305 RSRSAKLRAGMR 316 R+RSAKLR + Sbjct: 301 RARSAKLRIAEK 312 >gi|290476461|ref|YP_003469366.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii SS-2004] gi|289175799|emb|CBJ82602.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii SS-2004] Length = 314 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 174/320 (54%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MANSHYKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGADGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS+L Y+ + +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIEAAKAI---TDPRFSITHGPFSELATYIEEAGLVGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SA++ + +A D+ +L GEE+ A RIA AIV R Q Sbjct: 118 SFMRDGPLDMRMDPTRGQSATEWLMKAEADDIAWVLKTFGEERFAKRIARAIVARNQEGQ 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T++L+ LI + K HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 178 ITRTRELAELIAQA-SPVKEKHKHPATRSFQAIRIYINSELEEIERALNGALQVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + +SI K + P++++ Sbjct: 237 LSVISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTETQLKAQGGRSLKSIGK--LKPSEDE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 V N R+RS+ LR + E Sbjct: 295 VVINPRARSSVLRFAEKAGE 314 >gi|94987539|ref|YP_595472.1| S-adenosyl-methyltransferase MraW [Lawsonia intracellularis PHE/MN1-00] gi|172046236|sp|Q1MPC6|RSMH_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94731788|emb|CAJ55151.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Lawsonia intracellularis PHE/MN1-00] Length = 312 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 182/310 (58%), Gaps = 11/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PV+LE+ IA+L P LD T G GG+S + + G+ + LD+D A++ + Sbjct: 1 MHQPVMLEETIAMLKPHAKGRYLDGTVGLGGHSFAILQSAGDGAELCGLDQDKKALAIAE 60 Query: 76 ETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T++ +K++ L +S + + K +DG + D+GVSS+Q+D +RGFSF GP Sbjct: 61 MTLKPFKKRVHLVHTKYSSFPLILKALGWKLLDGALIDIGVSSLQLDNAERGFSFLYDGP 120 Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + S ++VN++ + L I+ GEE QA+RIA AIV++R++ P TT++ Sbjct: 121 LDMRMDQDANNNSLFEIVNKSRQEYLKDIISRYGEEPQANRIAKAIVQKRRTKPITTTKE 180 Query: 191 LSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI++ + + HPAT++FQA RI VN+E+ EL + L + GG + V+ Sbjct: 181 LADLIEQAYPAAWRAKSRHHPATKTFQAFRIVVNSELNELEKFLNMIMGWIAPGGRVAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK++ S + + + + H ITKK + P++++++ N RSR Sbjct: 241 SFHSLEDRIVKQYMKSWTRSCICPPYVPVCKCFHKPEAILITKKPIRPSEKEISENIRSR 300 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 301 SAKLRVAEKV 310 >gi|15902346|ref|NP_357896.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae R6] gi|116515442|ref|YP_815821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39] gi|225853917|ref|YP_002735429.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA] gi|30315982|sp|P59658|RSMH_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122279293|sp|Q04MC7|RSMH_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825666|sp|C1CCA8|RSMH_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1524350|emb|CAB01927.1| OrfD [Streptococcus pneumoniae] gi|15457856|gb|AAK99106.1| YllC protein [Streptococcus pneumoniae R6] gi|116076018|gb|ABJ53738.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39] gi|225724201|gb|ACO20054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA] Length = 316 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +++K ++P+ E++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVVRKI 314 >gi|225077130|ref|ZP_03720329.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens NRL30031/H210] gi|224951541|gb|EEG32750.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens NRL30031/H210] Length = 320 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 167/315 (53%), Gaps = 12/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + + L + +D TFG GG+SR ++ D+DP A++ Sbjct: 5 ENYQHVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++ S+ F Q + + +DG +FDLG+SS QID G RGFSF+ Sbjct: 65 VANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V+ Sbjct: 184 HKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+F S R + ++ +++ K + P + N R+ Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTETEANPRA 301 Query: 307 RSAKLRAGMRTVERS 321 RSA LR R+ Sbjct: 302 RSAVLRVAERSSGEF 316 >gi|84686327|ref|ZP_01014221.1| methyltransferase MraW/YabC [Maritimibacter alkaliphilus HTCC2654] gi|84665510|gb|EAQ11986.1| methyltransferase MraW/YabC [Rhodobacterales bacterium HTCC2654] Length = 330 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 140/326 (42%), Positives = 198/326 (60%), Gaps = 5/326 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M A H+PVLL ++ + P V +D TFGAG Y+R + G+ VI +DRD Sbjct: 1 MMVAAAARPSPHIPVLLRPLLETVAPVS-GVWIDGTFGAGSYARGLVEAGAETVIGIDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + DY + L + TFS + + D VDGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAHEMAEGWLADYDGRIRLERGTFSDMDEIAGD-PVDGVVLDLGVSSMQLDLAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G +A+D+VN+A ++L IL GEE+ + RIA IV+ R++ F+T Sbjct: 119 MRDGPLDMRMSQEGPTAADLVNEAPEEELADILYHYGEERASRRIARQIVRAREAESFKT 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++K + K + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L V Sbjct: 179 TAQLAETVEKCLPRPKPGQSHPATRSFQAIRIAVNDEFGQLAEGLEAAERALKPGGKLAV 238 Query: 248 VSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHSLEDR+VK+F + S R+ + H F ++ + P +E++A N R+ Sbjct: 239 VTFHSLEDRVVKRFLQLAASTGGGGSRYAPAAEDHTPRFDLTPRRAIAPDEEELAENPRA 298 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RS++LR RT + D S + LP Sbjct: 299 RSSRLRVATRTDAPAERTDRSKLGLP 324 >gi|242373465|ref|ZP_04819039.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis M23864:W1] gi|242348828|gb|EES40430.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis M23864:W1] Length = 304 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 157/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E +++ Sbjct: 1 MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTAIENAKEVLKE 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHNNFRELTNILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKLDMRM 120 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT L +I+ Sbjct: 121 DQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQQPIETTLQLVDIIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQA+RI VN+E+ + A + +K G + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIENVKVNGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R I A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQIFQEYEKGPEVPRGLPIIPEAYSPKLKRVNRKPITATEEDLDENNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|241205565|ref|YP_002976661.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM1325] gi|262825385|sp|C6ARU7|RSMH_RHILS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240859455|gb|ACS57122.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 341 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 170/309 (55%), Positives = 214/309 (69%), Gaps = 1/309 (0%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + + +F L + FS Sbjct: 33 PAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVAAHGGRFKLVHSQFS 92 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS G+SA+DVVN+A V Sbjct: 93 HLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSAEGVSAADVVNRAKV 152 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ ++IHPATR Sbjct: 153 ADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRV 212 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQALRIFVN+E+ ELAQ L +AE ALK GG L+ V+FHSLEDR+VKKFF+ R+GK R Sbjct: 213 FQALRIFVNDELGELAQALFAAEAALKPGGRLVAVTFHSLEDRIVKKFFSDRAGKASGSR 272 Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPR 332 H+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT + D S P Sbjct: 273 HLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEAAAEAADMSLFGFPN 332 Query: 333 LPTLSQFRG 341 L +L + G Sbjct: 333 LASLGKLGG 341 >gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5] gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5] Length = 307 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 I HVPV+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MIQSHVPVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFVNTAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K + + + IT K + + ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALASSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|116052453|ref|YP_792766.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa UCBPP-PA14] gi|122257540|sp|Q02H20|RSMH_PSEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115587674|gb|ABJ13689.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 313 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 182/318 (57%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D Sbjct: 1 MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121 +DP A+ G+ + +F + Q +F++L D V + VDGV+ DLGVSS Q+D Sbjct: 56 KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM+ GISA++ + A +++ R+ + GEE+ A R+A AIV+RR Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKVYGEERFAKRMARAIVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF+ T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + + + K ++E Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEE 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA +R + Sbjct: 294 ELKANPRSRSAVMRVAEK 311 >gi|87161763|ref|YP_493770.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194885|ref|YP_499685.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus NCTC 8325] gi|253731798|ref|ZP_04865963.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|87127737|gb|ABD22251.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202443|gb|ABD30253.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus NCTC 8325] gi|253724469|gb|EES93198.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|298694470|gb|ADI97692.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus ED133] gi|302751002|gb|ADL65179.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320141006|gb|EFW32853.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA131] gi|320143062|gb|EFW34852.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA177] Length = 304 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 156/301 (51%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E ++D Sbjct: 1 MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +A ++VN + + L +I GEEK + +IA I R+ P TT +L +I+ Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ + A + +K G + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|25010349|ref|NP_734744.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae NEM316] gi|30173049|sp|Q8E782|RSMH_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23094701|emb|CAD45920.1| unknown [Streptococcus agalactiae NEM316] gi|319744247|gb|EFV96612.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus agalactiae ATCC 13813] Length = 315 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++ A D+D A+ Sbjct: 7 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + Q + + F L + ++G+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + + +K ++P+QE++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR R Sbjct: 307 KLRVARRI 314 >gi|325662359|ref|ZP_08150968.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086162|ref|ZP_08335244.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471361|gb|EGC74584.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406321|gb|EGG85835.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 316 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLLE+ + LN P + +D T G GG++ CK + I +D+D A+ Sbjct: 1 MEFKHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAEEVCKQLNDKGSFIGIDQDAAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + E+ ++ ++ + ++ + ++ VDG++ DLGVSS Q+D +RGFS++ Sbjct: 61 AASVRLAGFGERVTIIRSNYCDMKSRLRERGIDKVDGIILDLGVSSYQLDTAERGFSYRV 120 Query: 130 SGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +VN + +L RI+ GE+K A IA IV R+ AP +TT Sbjct: 121 DAPLDMRMDRRQEKTARDIVNTYSEMELFRIIRDYGEDKFAKNIAKHIVMEREKAPIETT 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ + + N HPA R+FQA+RI +N E+E L L + L G + + Sbjct: 181 GQLCEIIRHAIPMKFQKNTGHPAKRTFQAIRIELNRELEVLRDTLDEMIELLNDNGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F H + + + ITKK ++P ++++ N RS Sbjct: 241 ITFHSLEDRIVKGIFKKNENPCTCPSHFPVCVCGNVSKGKVITKKPILPGEQELEENSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|315498857|ref|YP_004087661.1| s-adenosyl-methyltransferase mraw [Asticcacaulis excentricus CB 48] gi|315416869|gb|ADU13510.1| S-adenosyl-methyltransferase MraW [Asticcacaulis excentricus CB 48] Length = 327 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 130/313 (41%), Positives = 199/313 (63%), Gaps = 5/313 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 + H+ VLL +VIA + P G++++D TFGAGGY+R+F G+ VIA DRD + Sbjct: 2 SEAPHISVLLNEVIAAVAPESGRLVVDGTFGAGGYTRAFLSRGAEVIAFDRDARVQPFVE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D+ ++F FS++ + + VD +V D+GVSSMQ+D DRGFSF + GP Sbjct: 62 AVRGDFGDRFRFVNRPFSEMAAGLAELGVDRVDAIVLDIGVSSMQLDEADRGFSFMRDGP 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM+ G+SA+D+VN+ D+ I+ + GEE ++ IA AIVKRR+ APF+ T DL+ Sbjct: 122 LDMRMAVDGLSAADIVNEWAEADIAHIIWLYGEEHRSRAIAAAIVKRRKEAPFERTLDLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++K V + +++HPAT++FQALRI VN+E+ EL L ++E+ LK G+L VV+FHS Sbjct: 182 AVVEKAVGGRRGDKVHPATKTFQALRIAVNDELGELESALEASERLLKPEGVLAVVTFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F A R+G+ + P ++ + + + P++ +++ N R+RSAK Sbjct: 242 LEDRMVKSFLAERAGRTPSGSRHAPQIQTGPAPTYRLDSTRAIAPSEAELSGNPRARSAK 301 Query: 311 LRAGMRTVERSIE 323 LRA RT + Sbjct: 302 LRAARRTGHPPFD 314 >gi|148543819|ref|YP_001271189.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016] gi|184153222|ref|YP_001841563.1| hypothetical protein LAR_0567 [Lactobacillus reuteri JCM 1112] gi|227364723|ref|ZP_03848772.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682650|ref|ZP_08162167.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus reuteri MM4-1A] gi|263456253|sp|A5VJ28|RSMH_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456260|sp|B2G6K1|RSMH_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148530853|gb|ABQ82852.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016] gi|183224566|dbj|BAG25083.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070182|gb|EEI08556.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3] gi|324978489|gb|EGC15439.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus reuteri MM4-1A] Length = 318 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 176/313 (56%), Gaps = 13/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A LN P +DAT G GG++++ + ++ + D+D A+ +E Sbjct: 5 KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + +++ +L + F L+ + V +++DLGVSS Q D RGFS+Q Sbjct: 65 HLKTAIEQQKLTLVEDNFRNLKAELNSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA +VVN+ + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKVAPIKTTFE 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFAS---RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F SG V +IP+ P F+ I KK +V + E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASDEELAANHRA 303 Query: 307 RSAKLRAGMRTVE 319 SAKLR + E Sbjct: 304 HSAKLRIIEKIRE 316 >gi|293366856|ref|ZP_06613532.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Staphylococcus epidermidis M23864:W2(grey)] gi|291319157|gb|EFE59527.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Staphylococcus epidermidis M23864:W2(grey)] Length = 304 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E +++ Sbjct: 1 MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKEVLKE 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKLDMRM 120 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT +L +I+ Sbjct: 121 DQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 180 Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + ++ HPA R FQA+RI VN+E+ + A + +K GG + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T +D+ N R+RSAKLR Sbjct: 241 RLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|254362469|ref|ZP_04978577.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica PHL213] gi|153094061|gb|EDN74973.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica PHL213] Length = 312 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 165/313 (52%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H+ VLL + + L P + +D TFG GG+SR +IA DRDP A+ Sbjct: 2 SENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q +F + FS + + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQTI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSF 118 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA++ + Q + +DL +L GEE+ A RIA A+V +SA + Sbjct: 119 MRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEK 178 Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++ L K+ HPATRSFQA+RIF+N E++EL + L SA L G L Sbjct: 179 ISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGELDELEKALNSALTVLAPEGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 ++SFHSLEDR+VK+F S + R + A + K ++P++ ++ N Sbjct: 239 SIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA LR + Sbjct: 299 ARSRSAVLRIAEK 311 >gi|46199019|ref|YP_004686.1| mraW protein [Thermus thermophilus HB27] gi|85701363|sp|P62476|RSMH_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46196643|gb|AAS81059.1| mraW protein [Thermus thermophilus HB27] Length = 285 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 26/301 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ + Sbjct: 5 THVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL- 63 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + ++ Q F L+ ++ + VDG++ DLGVSS +D RGFS+QK GPLDM Sbjct: 64 --HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+ AP +TT L+ ++ Sbjct: 122 RMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +K V F + HPA ++FQALRI+VN+E+ L + L A + L G L+V++FHSLED Sbjct: 182 RKAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPRGRLVVIAFHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+F + + +TKK +VP++++ A N R+RSAKLRA Sbjct: 240 RVVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAE 281 Query: 316 R 316 + Sbjct: 282 K 282 >gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och 149] gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och 149] Length = 330 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 139/311 (44%), Positives = 187/311 (60%), Gaps = 5/311 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76 H+PVLL ++ + P G LD TFGAGGY+R + G+ VIA+DRDP A + Sbjct: 11 PPHIPVLLSAILDAVAPVHGD-WLDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAAD 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Y + FS++ Y +DGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 70 WADAYGARLVQQLGVFSKMDTY--ADALDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMR 127 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G SA+D+VN+A+ + + IL GEE+ + RIA AI+ R AP TT L+ +I+ Sbjct: 128 MSQEGPSAADIVNEASAETIANILFQYGEERASRRIAKAILTERAIAPITTTLHLAGIIE 187 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + SK + H ATRSFQALRI VN+E EL QGL +AE+ALK GG L VV+FHS+EDR Sbjct: 188 RCLPRSKPGQSHAATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVVTFHSVEDR 247 Query: 257 LVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F +R+G F ++K +V +VA N R+RSAKLR + Sbjct: 248 MVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADYAEVAANPRARSAKLRIAV 307 Query: 316 RTVERSIEDDS 326 RT + E D+ Sbjct: 308 RTDAPAGEIDA 318 >gi|157373543|ref|YP_001472143.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3] gi|262826558|sp|A8FQ92|RSMH_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157315917|gb|ABV35015.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3] Length = 314 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 13/316 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + +A LN + +D TFG GG+SR K +IA+DRDP Sbjct: 1 MMSQEFAHLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ ++ D + FS+ F QL YV D +DGV+ D GVSS Q+D +RGF Sbjct: 61 AIAAAEQFADDAR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGF 118 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A+D + +A ++D+ + GEEK + IA I R+ P Sbjct: 119 SFLRDGPLDMRMDNSQGETAADWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T++L+ LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G Sbjct: 179 FLRTKELADLIAR-ISKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALSVLAPHGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F + + A + + K + P++E+V Sbjct: 238 LSVISFHSLEDRMVKRFIRRHCQGESVPHGLPITEAEINKSRLLKGIGKAIKPSEEEVER 297 Query: 303 NRRSRSAKLRAGMRTV 318 N R+RS+ LR R Sbjct: 298 NTRARSSVLRIAERLE 313 >gi|55823597|ref|YP_142038.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus CNRZ1066] gi|55739582|gb|AAV63223.1| S-adenosylmethionine-dependent methyltransferase, putative [Streptococcus thermophilus CNRZ1066] Length = 354 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 167/322 (51%), Gaps = 15/322 (4%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 K M++ H HV VLL + + +L+ P + +DAT G G+S ++ Sbjct: 36 IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQ 117 D+D A+ Q ++DY K + + F L+ + + +DG+++DLGVSS Q Sbjct: 91 CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G + V++FHSLEDRL K+ F S + + +K ++P Sbjct: 271 LDLLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILP 330 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 +QE++ N RS SAKLR + Sbjct: 331 SQEELEANNRSHSAKLRVAKKI 352 >gi|323440951|gb|EGA98658.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O11] gi|323442268|gb|EGA99898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O46] Length = 304 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E ++D Sbjct: 1 MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +A ++VN + + L +I GEEK + +IA I R+ P TT +L +I+ Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ + A + +K GG + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVGGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|88858794|ref|ZP_01133435.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2] gi|88819020|gb|EAR28834.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2] Length = 312 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 184/313 (58%), Gaps = 15/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H+ VL+E+ I L+ P + +D TFG GG+S K + A+DRDP A+ Sbjct: 2 SENFQHISVLMEETIDALDIKPDGIYIDGTFGRGGHSGEILKKLGENGRLQAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 Q D + FS+ TFS+++ + VDG++ D+GVSS Q+D +RGFSF Sbjct: 62 KAAQRFADDAR--FSIAHNTFSEIKLVAEEADLIGKVDGILLDIGVSSPQLDDAERGFSF 119 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K GPLDMRM+ S G SA++ + A+++++T ++ GEEK RIAH I++ R P Sbjct: 120 MKDGPLDMRMNPSAGRSAAEWLAVADLEEITWVIKTYGEEKFGRRIAHKILETRVHTPIT 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +T L+ LI + V K+ HPATR+FQA+RI++N+E+EE+ L ++ + LK GG L+ Sbjct: 180 STAQLAKLIDEAV-PVKDKHKHPATRAFQAIRIYINSELEEITTALSASLEVLKPGGRLV 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK+F +S R + +N ++I K + P +E++A N Sbjct: 239 VISFHSLEDRIVKQFIKKQSKGEALPRGLPLTNAQLQQKLTLKAI-GKAIKPGEEELARN 297 Query: 304 RRSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 298 SRARSSVLRIAER 310 >gi|241760229|ref|ZP_04758325.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114] gi|241319340|gb|EER55805.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114] Length = 320 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 169/316 (53%), Gaps = 12/316 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + + L + +D TFG GG+SR ++ D+DP A++ Sbjct: 5 ENYQHVTVLLHEAVDALAIRKDGIYVDGTFGRGGHSRLILSRLSEQGRLVVFDKDPEAIA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++ S+ F Q + + +DG +FDLG+SS QID G RGFSF+ Sbjct: 65 VANE-LAKQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ L+ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V+ Sbjct: 184 RKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+F S R + ++ +++ K + P + N R+ Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTETEANPRA 301 Query: 307 RSAKLRAGMRTVERSI 322 RSA LR R+ + Sbjct: 302 RSAVLRVAERSSGEFL 317 >gi|261493507|ref|ZP_05990029.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495860|ref|ZP_05992292.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308487|gb|EEY09758.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310840|gb|EEY12021.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 312 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 166/313 (53%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H+ VLL + + L P + +D TFG GG+SR +IA DRDP A+ Sbjct: 2 SENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q +F + FS + + +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQTI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSF 118 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA++ + Q + +DL +L GEE+ A RIA A+V +SA + Sbjct: 119 MRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEK 178 Query: 187 TTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++ L K+ HPATRSFQA+RIF+N+E++EL + L SA L G L Sbjct: 179 ISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSELDELEKALNSALTVLAPEGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 ++SFHSLEDR+VK+F S + R + A + K ++P++ ++ N Sbjct: 239 SIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA LR + Sbjct: 299 ARSRSAVLRIAEK 311 >gi|323466809|gb|ADX70496.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus helveticus H10] Length = 349 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 171/337 (50%), Gaps = 21/337 (6%) Query: 1 MESKSCKTMSS------AIHHTI--GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR 52 ++ K KTM + +++ I H VLL + I L P G + +DATFG GG+++ Sbjct: 12 LKKKLTKTMMTLLKIWTTLNYKIMKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAK 71 Query: 53 SFCKM--GSNVIALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQD----YVPD 101 ++ D+D +A+ + D + + L FS L+ Sbjct: 72 YLLSKIETGTLVGFDQDEYAIKSAELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYS 131 Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRIL 160 G+DG+ +DLGVSS Q D DRGFS++ + LDMRM S + A +VN + K+L IL Sbjct: 132 DGIDGIYYDLGVSSPQFDQADRGFSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADIL 191 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRI 219 G+EK + +IAH IV+RR+ P TT L +I++ + + HPA +SFQALR+ Sbjct: 192 YQYGDEKFSRQIAHRIVERRKDKPIVTTFQLVDIIKEAIPAYARRTGGHPAKKSFQALRV 251 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 VN+E++ L L A + L+ GG + V++F S ED++VKK F S + + Sbjct: 252 AVNHELDVLQASLEEAIRILRPGGRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPD 311 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +K + + ++ N RS SAKLR + Sbjct: 312 DMKPTLRLENRKPITASTSELENNNRSHSAKLRVAEK 348 >gi|76788170|ref|YP_329009.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909] gi|161485617|ref|NP_687320.2| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 2603V/R] gi|30173046|sp|Q8E1R8|RSMH_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909222|sp|Q3K394|RSMH_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76563227|gb|ABA45811.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909] Length = 315 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 97/308 (31%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++ A D+D A+ Sbjct: 7 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + Q + + F L + ++G+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + R TT + Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + + +K ++P+QE++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR R Sbjct: 307 KLRVARRI 314 >gi|237720371|ref|ZP_04550852.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4] gi|229450122|gb|EEO55913.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4] Length = 304 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 163/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ GI+A+D+VN + L +L + GE K + ++A IVK R + Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQNIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L++A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|308069889|ref|YP_003871494.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681] gi|305859168|gb|ADM70956.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681] Length = 316 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 170/315 (53%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H+ VL E+ LN + +D T G G+S +IA D+D +A++ Sbjct: 1 MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---------KGVDGVVFDLGVSSMQIDCGDRG 124 +E + Y+ + SL ++ F LQD + + V G++FDLGVSS Q D G+RG Sbjct: 61 AREKLSAYEGKISLVKSNFRHLQDKLTELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S +A ++VN+ + ++ RIL GEEK + RIA +++RR + Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWSEAEIARILFHYGEEKFSRRIAKIMIERRLNK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + + HPA RSFQALRI VN+E+ L L A + L G Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDSLHQAIRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K F K + + + + +K ++ +++++ Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILEDKMEGDLKLVNRKPIMASEQELE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 301 LNPRSRSAKLRVAEK 315 >gi|55821677|ref|YP_140119.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMG 18311] gi|55737662|gb|AAV61304.1| S-adenosylmethionine-dependent methyltransferase, putative [Streptococcus thermophilus LMG 18311] Length = 354 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 167/322 (51%), Gaps = 15/322 (4%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 K M++ H HV VLL + + +L+ P + +DAT G G+S ++ Sbjct: 36 IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQ 117 D+D A+ Q ++DY K + + F L+ + + +DG+++DLGVSS Q Sbjct: 91 CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G + V++FHSLEDRL K+ F S + + +K ++P Sbjct: 271 LDLLAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKVALVNRKPILP 330 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 +QE++ N RS SAKLR + Sbjct: 331 SQEELEANNRSHSAKLRVAKKI 352 >gi|152988306|ref|YP_001350328.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7] gi|262825003|sp|A6VB93|RSMH_PSEA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150963464|gb|ABR85489.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7] Length = 313 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 180/318 (56%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D Sbjct: 1 MNAT-----YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCG 121 +DP A+ G+ + +F + Q +F++L D V + VDGV+ DLGVSS Q+D Sbjct: 56 KDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RR Sbjct: 115 ERGFSFLNDGPLDMRMNPGQGISAAEFIASAAEEEIARVFKEYGEERFAKRMARAIVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF+ T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L Sbjct: 175 QERPFERTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + + + K ++ Sbjct: 234 VGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEA 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA +R + Sbjct: 294 ELKANPRSRSAVMRVAEK 311 >gi|55981045|ref|YP_144342.1| S-adenosyl-methyltransferase MraW [Thermus thermophilus HB8] gi|68565453|sp|Q5SJD8|RSMH_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. gi|55772458|dbj|BAD70899.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 285 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 26/301 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ + Sbjct: 5 THVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL- 63 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + ++ Q F L+ ++ + VDG++ DLGVSS +D RGFS+QK GPLDM Sbjct: 64 --HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+ AP +TT L+ ++ Sbjct: 122 RMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +K V F + HPA ++FQALRI+VN+E+ L + L A + L GG L+V++FHSLED Sbjct: 182 RKAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+F + + +TKK +VP++++ A N R+RSAKLRA Sbjct: 240 RVVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAE 281 Query: 316 R 316 + Sbjct: 282 K 282 >gi|222053873|ref|YP_002536235.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32] gi|263455960|sp|B9M164|RSMH_GEOSF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221563162|gb|ACM19134.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32] Length = 312 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HV VL +VIA L P PG + +D T G G++R + +I D+D A++ Sbjct: 5 KHVSVLPAEVIAYLAPRPGGIYVDGTLGGAGHARLILEASAPDGLLIGFDQDGQALASAG 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++ L + F+ L++ + + +DG + D+GVSS Q+D +RGFSFQ P Sbjct: 65 ERLAPFGKRVVLVKRNFAFLEEALAEIGIEAIDGFLLDVGVSSHQLDTVERGFSFQHDAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +A+++VN + +DL R++ GEE+ A RIA I+KRR+ P TT L Sbjct: 125 LDMRMDLSAETTAAELVNTLSEEDLCRVIREYGEERWAKRIAAFIIKRREETPIATTLQL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V R+HPATR+FQALRI VN+E+ L +GL + LK GG +V+SF Sbjct: 185 VDVIKAAVPKGAWEVRLHPATRTFQALRIAVNDELASLEKGLSGGVRLLKKGGRGVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K F S + R + + + +T K VV + +V+ N RSRSA Sbjct: 245 HSLEDRIAKTTFRSLAQGCKCPREIPRCVCGNLPQVKVLTGKPVVANEVEVSSNPRSRSA 304 Query: 310 KLRAGMRT 317 +LRA + Sbjct: 305 RLRAVEKI 312 >gi|237716641|ref|ZP_04547122.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1] gi|262405416|ref|ZP_06081966.1| MraW methylase [Bacteroides sp. 2_1_22] gi|294809136|ref|ZP_06767854.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC 1b] gi|229442624|gb|EEO48415.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1] gi|262356291|gb|EEZ05381.1| MraW methylase [Bacteroides sp. 2_1_22] gi|294443690|gb|EFG12439.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC 1b] Length = 304 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ GI+A+D+VN + L +L + GE K + ++A IVK R + Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|304437331|ref|ZP_07397290.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369587|gb|EFM23253.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 313 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 165/312 (52%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 T HV VL E+V+A LN PG + +DAT G G+++ +I +D+D A++ Sbjct: 2 TEFHHVSVLPEEVVAALNVVPGGIYVDATLGGAGHAQRIAAQLSEQGRLIGIDQDETAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129 +E + D + Q SL + F L + +GV V +FDLGVSS QID +RGFS+ + Sbjct: 62 AARERLADVRCQVSLVRDNFRHLTAILAAEGVSSVDGALFDLGVSSPQIDTPERGFSYMQ 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM SA DVVN + LT I GEE+ A RIA I K RQ+ P TT Sbjct: 122 DAPLDMRMDQRARRSAYDVVNTYTAERLTEIFYTYGEERWAKRIASFIEKERQTHPITTT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 DL ++I + V + HPA R FQALRI VN+E+ L L +A AL+ GG L V Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQALRIEVNDELGILEGALTAAVDALRIGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + + H I H + I K + + N R+ Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPICVCGHTPEVRLI-GKARAASAAECRVNTRA 300 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 301 RSAKLRVAEKIK 312 >gi|152979594|ref|YP_001345223.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes 130Z] gi|263446597|sp|A6VQP1|RSMH_ACTSZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150841317|gb|ABR75288.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes 130Z] Length = 321 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 172/323 (53%), Gaps = 18/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 MS + +H VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MSERNTFSHPEHTTVLLHEAVQGLALKEQGIYIDGTFGRGGHSRLILSRLSPNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A+ ++ +F + +FS + + VDG++ DLGVSS Q+D Sbjct: 61 RDPLAIVEAEKI---QDPRFQIEHNSFSAIPEICAKYGLTGKVDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF K GPLDMRM G+SAS+ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 QRGFSFMKDGPLDMRMDTTKGLSASEWLAQVSERDLAWVLKTFGEERFAKRIAAAIVNYN 177 Query: 181 QSAPFQTTQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + + L+ +Q + K+ HPATR+FQA+RIF+N+E++EL L+SA Sbjct: 178 KSAVEKNEEILNRTLQLAELISSAVPFKDKHKHPATRTFQAIRIFLNSELDELESVLQSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293 L G L V+SFHSLEDR+VK F +S + + +++ K + Sbjct: 238 LTVLAPQGRLSVISFHSLEDRMVKHFMRKQSRGEDIPKGLPLREEQIQRNRTLKTIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++ ++A N RSRSA LR + Sbjct: 298 QPSEREIAVNPRSRSAVLRIAEK 320 >gi|312869527|ref|ZP_07729682.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3] gi|311094974|gb|EFQ53263.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3] Length = 317 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 171/317 (53%), Gaps = 11/317 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + HV VLL++ +A LN P +D T G GG++ + ++ + D+D A Sbjct: 1 MAMATFKHVTVLLQEAVAGLNVQPAGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETA 60 Query: 71 VSCGQETMRD--YKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + ++ ++D + +L + F LQ VDGV++DLGVSS Q D RGF Sbjct: 61 IDYNRDRLKDALAAGKLTLIEDNFRHLQKDLAAQGVHKVDGVLYDLGVSSPQFDDAQRGF 120 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+Q PLDMRM+ +SA +VVN+ + L RIL GEE+ A +IA I +RRQ P Sbjct: 121 SYQLDAPLDMRMNQGQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREP 180 Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG Sbjct: 181 IRTTFELVDVIKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALAMLAVGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + V++F SLEDRLVK F +S + + F+ I +K ++P +++A Sbjct: 241 RISVITFQSLEDRLVKTMFKEKSSISDDLPQGLPVIPEGMSPDFKLINRKPILPGTQELA 300 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+ SAKLR + Sbjct: 301 ENHRAHSAKLRIIEKIK 317 >gi|89895661|ref|YP_519148.1| hypothetical protein DSY2915 [Desulfitobacterium hafniense Y51] gi|219670081|ref|YP_002460516.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense DCB-2] gi|122482071|sp|Q24TD8|RSMH_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446217|sp|B8FT64|RSMH_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89335109|dbj|BAE84704.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540341|gb|ACL22080.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL++ + + P +D T G G+S ++ D+DP A+ Q+ Sbjct: 5 HVTVLLKETVDGVVRDPSGTYVDCTLGGAGHSGYVLSRLSEKGKLVGFDQDPLAIKNAQD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F L F L++ + V GV+FDLGVSS Q+D +RGFS+ + L Sbjct: 65 KFAGDPRVF-LVNRNFEGLEESLQSLELLPVQGVLFDLGVSSPQLDEAERGFSYMQDAEL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA +VN+ + L IL GEEK + RI IV+ R+ TT +L Sbjct: 124 DMRMNPQNPLSAKTLVNEGKAEMLAEILWKYGEEKWSKRIVEFIVEARKQKSITTTGELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + HPA R+FQALRI VN+E+ L + L + L GG + V++FH Sbjct: 184 DIIKRAIPAGARREGPHPAKRTFQALRIAVNDELGVLERALDQVIRCLAPGGRVGVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F S G+ + A+ + + +K ++P+ +++ N R+RSAK Sbjct: 244 SLEDRIVKETFNSWLGRCTCPPVFPVCQCGARAMARLVHRKPILPSPQEIEANPRARSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRIAEK 309 >gi|270295456|ref|ZP_06201657.1| methylase MraW [Bacteroides sp. D20] gi|317478454|ref|ZP_07937614.1| MraW methylase [Bacteroides sp. 4_1_36] gi|270274703|gb|EFA20564.1| methylase MraW [Bacteroides sp. D20] gi|316905343|gb|EFV27137.1| MraW methylase [Bacteroides sp. 4_1_36] Length = 306 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 16/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G +++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L + Y + VD ++ DLGVSS D +RGFS Sbjct: 61 A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G++A+D+VN + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 ATIGEFLEIVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP +E++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 291 Query: 306 SRSAKLRAGMRTVE 319 SRSAKLR R + Sbjct: 292 SRSAKLRIAERVMN 305 >gi|284048645|ref|YP_003398984.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM 20731] gi|283952866|gb|ADB47669.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLLE+ + + P + +D T G GG+S +I +D+D A++ E Sbjct: 5 HKSVLLEESVQWVVTDPKGIYVDCTLGGGGHSHRITELLDPEGLLIGIDQDEDAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D + Q + F L + VDG++FDLGVSS Q+D +RGFS+ GPL Sbjct: 65 RLKDARCQVKIVHNNFRNLDQILDQLGIPQVDGILFDLGVSSYQLDTPERGFSYMHDGPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ DL ++ GEE+ A RIA IV R+ P +TT +L Sbjct: 125 DMRMDQEASLTAEQVVNRYKEDDLAGLIYKYGEERWAKRIAQFIVAARKEHPIRTTGELV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R+FQA+RI VN+E++ L + +A LK+GG + V++FH Sbjct: 185 HIIKAAIPKGARQDGPHPAKRTFQAIRIEVNDELKILDATMEAAVHHLKSGGHIGVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K+ F + + + + K P + ++A N R+RSA+ Sbjct: 245 SLEDRIIKQAFKRLQRGCICPPELPVCVCGRKPELKKL--KEFTPGEAELAENPRARSAR 302 Query: 311 LRAGMRT 317 LR ++ Sbjct: 303 LRGAVKI 309 >gi|262037275|ref|ZP_06010755.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264] gi|261748703|gb|EEY36062.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264] Length = 307 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 174/309 (56%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVL ++V+ + + +D T G GG++ K S VIA+D+D A++ Sbjct: 1 MEYHKPVLFDEVMENIIKKEKAIYVDCTLGGGGHTEGILKSSSDDSKVIAIDQDIEAINF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + +Y + +FQ F + V VD ++ D+GVSS Q+D +RGFS++ Sbjct: 61 AKKRLENYGNKMEIFQDNFRNIDTVVYFAGFNKVDRILMDIGVSSNQLDNIERGFSYKYE 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ +SA DVVN+ K++ I+ GEE ++ +IA IV+ R++ +TT Sbjct: 121 AKLDMRMNKELSVSAYDVVNKFAEKEIADIIYKYGEEPKSRKIAKNIVEYRKNKNIETTV 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LS ++ K++ K+ + HP+ R+FQA+RIFVN E+E L + L A L GG L+V++ Sbjct: 181 ELSDIVIKSIG--KSMKKHPSKRTFQAIRIFVNKELEVLEEALDKAVNLLNKGGKLLVIT 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + + ++ + +TKK + E++ N R+ S Sbjct: 239 FHSLEDRMVKEKFRKYENPCVCPPELPVCVCKKESLGKIVTKKPITAKNEELEINNRAHS 298 Query: 309 AKLRAGMRT 317 AKLR R+ Sbjct: 299 AKLRIFERS 307 >gi|148980580|ref|ZP_01816127.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961163|gb|EDK26479.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3] Length = 316 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA I+ +++ Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++ +V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPVGKAIKPSKGEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DENTRSRSSVLRIAEK 315 >gi|85858517|ref|YP_460719.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB] gi|123515897|sp|Q2LR39|RSMH_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85721608|gb|ABC76551.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB] Length = 315 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 9/309 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 H PVLLE+ IA LN G + +D T G GG++ + ++ +D D A+ Sbjct: 7 SYHEPVLLEEAIASLNCRGGGIYVDGTVGGGGHAALILERSAPDGFLLGMDVDGDALQAA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + + + +L +A ++ ++ + D VDG++ DLGVSS Q+D +RGFS K Sbjct: 67 EKRLMPFGRRKTLVKANYADMRKVLADLKILQVDGILLDLGVSSHQLDAAERGFSLLKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA DVVN + ++L I+ GEE A RIA AI ++R+ P ++T Sbjct: 127 PLDMRMDSEAGRSAYDVVNTCSERELKDIIRKYGEEIMAGRIARAIAEKRKDTPIKSTTQ 186 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++ + ++ +IHPATR+FQALRI++NNE+ L + + + LK GG ++S Sbjct: 187 LAAIVAGALPGGFRHKKIHPATRTFQALRIYINNELSNLHRAIFDSTDCLKPGGRFSIIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLED LVK F S + M + + IT+K + P +++V N RSRS Sbjct: 247 FHSLEDSLVKNGFRSLEKGCICPADMPVCACGQSPRLKVITRKPISPCRDEVEANPRSRS 306 Query: 309 AKLRAGMRT 317 A+LR R Sbjct: 307 ARLRTAERI 315 >gi|317493287|ref|ZP_07951709.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918680|gb|EFV40017.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium 9_2_54FAA] Length = 314 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL++ + LN + +D TFG GG+SR ++A+DRDP Sbjct: 1 MSEENYQHKTVLLDEAVNGLNLRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGF 125 A++ E +FS+ FS + YV + ++GV+ DLGVSS Q+D +RGF Sbjct: 61 AIAAAAEI---TDPRFSIIHGPFSDMATYVRELGLEGQINGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + +A +D+ +L GEE+ A RIA AIV+R + P Sbjct: 118 SFMRDGPLDMRMDPTRGLSAAEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVERNRLEP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L++LI + HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 178 MTRTHELATLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALNGALEILSPEGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + A +++ K + P+ ++ Sbjct: 237 LSVISFHSLEDRIVKQFIRHHSRGPQVPAGIPLTEAQLRSQGGRKLKALGK--MKPSSDE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 V+ N R+RS+ LR RTVE Sbjct: 295 VSANPRARSSVLRFAERTVE 314 >gi|291296375|ref|YP_003507773.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279] gi|290471334|gb|ADD28753.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279] Length = 283 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 120/303 (39%), Positives = 167/303 (55%), Gaps = 28/303 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 +H PVL + + L+ PG + +DAT G G++R + G V+A D+DP A++ Q Sbjct: 2 NHTPVLYHEALDWLSIRPGGLYVDATLGGAGHTRGILERGGQVVAFDQDPAAIARAQAL- 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +L QA F +L + VDG++ DLGVSS +D RGFS+Q GPLDM Sbjct: 61 --GLPNLTLIQANFRELVPELAKRGTPQVDGLLADLGVSSFHLDDAGRGFSYQHEGPLDM 118 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM ++A +VVN + L IL GEE +A RIA I + P TT L+ +I Sbjct: 119 RMGQGELTAHEVVNTYPEEALAEILFRYGEEPRARRIARFI---VEHRPIHTTTQLAEVI 175 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ F + HPA +SFQALRI++N+E+ L Q LRSAE LK GG L+V+SFHSLED Sbjct: 176 RRATGF--RSAGHPARKSFQALRIYINDELGALEQLLRSAEAVLKPGGRLVVISFHSLED 233 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK F + +S+TKK +VP++ + N R+RSAK+R Sbjct: 234 RLVKHFLRESTA-----------------LRSLTKKPIVPSEAEQRENPRARSAKMRVAE 276 Query: 316 RTV 318 R Sbjct: 277 RID 279 >gi|212635034|ref|YP_002311559.1| S-adenosyl-methyltransferase MraW [Shewanella piezotolerans WP3] gi|262826550|sp|B8CM48|RSMH_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212556518|gb|ACJ28972.1| S-adenosyl-methyltransferase mraW [Shewanella piezotolerans WP3] Length = 318 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 171/310 (55%), Gaps = 13/310 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 +H+ VLL + +A LN + +D TFG GG+SR + +IA+DRDP A+ Sbjct: 4 SFEHLSVLLTETVAGLNIREDGIYIDGTFGRGGHSRKVLEQLGPNGRLIAIDRDPQAILA 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ D + F + F QL YV + +DGV+ D GVSS Q+D +RGFSF + Sbjct: 64 AEQFKDDSR--FQIVHGGFGQLAQYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLR 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+ + +A ++D+ + GEEK + IA I R+ PF T Sbjct: 122 DGPLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRT 181 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++L+ LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G L V+ Sbjct: 182 KELADLIAR-ITKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F S + + A + + K + P+ E++ N R+ Sbjct: 241 SFHSLEDRMVKRFIRRHSQGESVPHGLPITEAEINKSRKLKGIGKAIKPSAEEIERNARA 300 Query: 307 RSAKLRAGMR 316 RS+ LR G R Sbjct: 301 RSSVLRIGER 310 >gi|315125595|ref|YP_004067598.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913] gi|315014108|gb|ADT67446.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913] Length = 312 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VL+++ I L P + +D TFG GG+S + A+D+DP A+ Sbjct: 3 AQFEHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGESGRLQAIDQDPQAIK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ +FS+ + FS+L + VDG++ D+GVSS Q+D RGFSF Sbjct: 63 SAEKF--ADDPRFSIAHSRFSKLYEVAEQNDLIGQVDGILLDIGVSSPQLDDAARGFSFM 120 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM +G SA+ + +A + D+T ++ LGEEK RIAH I++ R+ P T Sbjct: 121 KDGPLDMRMDPSTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILEVREHTPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L++A K LK GG L+V Sbjct: 181 TKQLADLVDEAV-PVKDKFKHPATRTFQAIRIYINSELEEIQTALQAAIKVLKPGGRLVV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F +S R + ++A + K + P+ ++VA N R Sbjct: 240 ISFHSLEDRIVKQFIKKQSKGEAIPRGLPLTDAQINKNLTLKAVGKAIKPSADEVARNPR 299 Query: 306 SRSAKLRAGMR 316 SRS+ LR R Sbjct: 300 SRSSVLRIAQR 310 >gi|60679854|ref|YP_209998.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis NCTC 9343] gi|265764988|ref|ZP_06093263.1| MraW methylase [Bacteroides sp. 2_1_16] gi|81317074|sp|Q5LIJ0|RSMH_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|60491288|emb|CAH06036.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis NCTC 9343] gi|263254372|gb|EEZ25806.1| MraW methylase [Bacteroides sp. 2_1_16] Length = 304 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 HVPVLL++ + +N +P +D TFG GG+SR G ++ D+D A Sbjct: 5 ETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA-- 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E F+ ++ F L + Y VD ++ DLGVSS D +RGFSF+ Sbjct: 63 ---ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRF 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ GI+A+DVVN + L I + GE K + ++A IVK R +T Sbjct: 120 DGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETI 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+ Sbjct: 180 GEFLEIIKP--LFGREREKKELAKIFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + + + P F+ + KV+VP ++++ N RSRS Sbjct: 238 TYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRS 295 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 296 AKLRIAEK 303 >gi|227544880|ref|ZP_03974929.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909900|ref|ZP_07127360.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112] gi|154705578|gb|ABS84215.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri] gi|227185154|gb|EEI65225.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892548|gb|EFK85908.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112] Length = 318 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 179/313 (57%), Gaps = 13/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A LN P +DAT G GG++++ + ++ + D+D A++ +E Sbjct: 5 KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKE 64 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + +++ +L + F L+ + V +++DLGVSS Q D RGFS+Q Sbjct: 65 QLKTAIEQQKLTLIEDNFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA +VVN+ + + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFAS---RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F SG V +IP+ P F+ I KK +V ++E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASEEELAANHRA 303 Query: 307 RSAKLRAGMRTVE 319 SAKLR + E Sbjct: 304 HSAKLRIIEKIRE 316 >gi|213612818|ref|ZP_03370644.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 304 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMR 79 VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 1 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQTI-- 58 Query: 80 DYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GPLDM Sbjct: 59 -NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 117 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM G SA++ + +A D+ +L GEE+ A RIAHAIV+R + P T++L+ + Sbjct: 118 RMDPTRGQSAAEWLQRAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEV 177 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFHSLE Sbjct: 178 V-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLE 236 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+F +S + + A + ++P +++VA N R+RS+ L Sbjct: 237 DRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRARSSVL 296 Query: 312 RAGMRTVE 319 R RT Sbjct: 297 RIAERTNA 304 >gi|153809202|ref|ZP_01961870.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185] gi|149128178|gb|EDM19398.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185] Length = 304 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 161/310 (51%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFTFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D++N + L I + GE K + ++A IVK R + Sbjct: 118 RFDGDLDMRMNKRAGLTAADILNTYEEERLADIFYLYGELKNSRKLASVIVKARNGQQIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP Q ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDQAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|78221625|ref|YP_383372.1| S-adenosyl-methyltransferase MraW [Geobacter metallireducens GS-15] gi|123572785|sp|Q39YM7|RSMH_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78192880|gb|ABB30647.1| methyltransferase [Geobacter metallireducens GS-15] Length = 313 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 173/307 (56%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ V+ +V+ALL+P PG V +D T G G++R + ++ DRDP A++ + Sbjct: 6 HLSVMPAEVLALLSPRPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAASK 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L ++ F+ + + + +DG + DLGVSS Q+D +RGFSFQ PL Sbjct: 66 RIASFGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQLDTAERGFSFQVDAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF--QTTQD 190 DMRM G +A+D+VN+ + +L RI+ GEE+ A RIA +VK R+ T Q Sbjct: 126 DMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVVKAREQHGPIESTLQL 185 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + + RIHPATR+FQALRI VN+E+ L +GL + + L GG +V+SF Sbjct: 186 VDCVKGAIPRAAWEERIHPATRTFQALRIAVNDELGSLERGLVAGIERLAPGGRGVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + + +T K V+ ++VA N R+RSA Sbjct: 246 HSLEDRIVKTVFRRYAQGCTCPKMLPRCVCGNKPRVRILTGKPVMAGGDEVATNPRARSA 305 Query: 310 KLRAGMR 316 K+RA + Sbjct: 306 KVRAVEK 312 >gi|228477291|ref|ZP_04061929.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126] gi|228251310|gb|EEK10481.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126] Length = 316 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + + +DG+++DLGVSS Q+D DRGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERDRGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+QE++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEELQPKVALVNRKPILPSQEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12] gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase [Dinoroseobacter shibae DFL 12] Length = 333 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 146/333 (43%), Positives = 198/333 (59%), Gaps = 5/333 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M +A H+PVLLE ++ P LD TFGAGGY+R + G+ VI +D+D Sbjct: 1 MVAAQDPPNAPHIPVLLEPILTRCAPI-TGTWLDGTFGAGGYARGLLEAGADRVIGVDQD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + DY ++ L F L D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLALEMAADWAGDYGDRLRLVAGNFEAL-DAHAGGPLDGVVLDLGVSSMQLDRAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ G SA+D+V + + L IL LGEE+ A RIA AIV R AP Sbjct: 119 LRDGPLDMRMAQHGRSAADLVAEEDADMLADILFHLGEERAARRIARAIVAARAVAPITR 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ + K + H ATRSFQALRI VN+E+ L +GL +AE AL+ GG L V Sbjct: 179 TSQLAEIVASCLPRPKPGQSHAATRSFQALRIAVNDELGALVRGLEAAEGALEPGGWLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF SG A R+ + PA F+ +K + PT+ +VA N R+ Sbjct: 239 VTFHSIEDRIVKRFFTQASGGAGRANRYAPETEDTPARFRLEPRKAIAPTEAEVAANPRA 298 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 RSA+LR G RT ++ D + + LP L TL++ Sbjct: 299 RSARLRIGRRTAAPAMPADRAALGLPHLYTLTE 331 >gi|323127869|gb|ADX25166.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 105/327 (32%), Positives = 173/327 (52%), Gaps = 15/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLG 112 ++ D+D A+ Q ++ Y K Q + + F L+ + + +DG+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRNLKARLEALGVTKIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM ++A DVVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K ++P+QE++A N R+ SAKLR + Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKI 335 >gi|160891413|ref|ZP_02072416.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492] gi|156858820|gb|EDO52251.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492] Length = 307 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 16/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G +++ D+D Sbjct: 2 MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L + Y + VD ++ DLGVSS D +RGFS Sbjct: 62 A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G++A+D+VN + L I + GE K + ++A IVK R + Sbjct: 117 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 177 ATIGEFLEIVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP +E++ N R Sbjct: 235 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 292 Query: 306 SRSAKLRAGMRTVE 319 SRSAKLR R + Sbjct: 293 SRSAKLRIAERVMN 306 >gi|53711604|ref|YP_097596.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46] gi|253564345|ref|ZP_04841802.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5] gi|115311579|sp|Q64ZL4|RSMH_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52214469|dbj|BAD47062.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46] gi|251948121|gb|EES88403.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5] gi|301161374|emb|CBW20914.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis 638R] Length = 304 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 163/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 HVPVLL++ + +N +P +D TFG GG+SR G ++ D+D A Sbjct: 5 ETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA-- 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E F+ ++ F L + Y VD ++ DLGVSS D +RGFSF+ Sbjct: 63 ---ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRF 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ GI+A+DVVN + L I + GE K + ++A IVK R +T Sbjct: 120 DGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETI 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+ Sbjct: 180 GEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + A + + P F+ + KV+VP ++++ N RSRS Sbjct: 238 TYHSLEDRMVKNIMKTGNVEGKATQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRS 295 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 296 AKLRIAEK 303 >gi|329295550|ref|ZP_08252886.1| 16S rRNA m(4)C1402 methyltranserfase [Plautia stali symbiont] Length = 313 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 119/316 (37%), Positives = 174/316 (55%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGAHGQLLAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++ +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEIK---DPRFSIVHGPFSALAEYVEERGLTGKIDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPRRGQSAAEWLQSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ LI K+ HPATRSFQA+RI++N+E+EE+ L+ A L GG L Sbjct: 179 RTKELADLI-AAATPVKDKFKHPATRSFQAIRIWLNSELEEIDIALKGALTVLAPGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVVVPTQEDVAF 302 ++SFHSLEDRLVK+F +S + + + + T K+++ + +V Sbjct: 238 IISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTESQLKALGGRELKTLGKLIL-GEAEVKD 296 Query: 303 NRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 297 NPRARSSVLRIAERTA 312 >gi|262273821|ref|ZP_06051634.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886] gi|262222236|gb|EEY73548.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886] Length = 317 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 170/319 (53%), Gaps = 17/319 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H+ VLL + I L P + +D TFG GG++R + + ++DRDP A+ Sbjct: 2 SEQFSHISVLLHESIDGLALKPDGIYVDGTFGRGGHTREILRRLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + +F++ FS +Q Y+ + +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 EEAGKI---DDPRFNIIHGPFSGIQQYMEARGLSGKIDGVLLDLGVSSPQLDDPERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + GI AS + +A+ D+ +L GEE+ A RIA AIV R+ + Sbjct: 119 MRDGPLDMRMDPTSGIPASQWLAEADADDIAWVLKEFGEERFAKRIARAIVAHREDETKE 178 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + +V S++ + HPATR FQA+RI++N+E+EE+ ++ A + L GG Sbjct: 179 PLTRTLQLANLIASVSPSRDRKKHPATRCFQAIRIYINSELEEIETAMQGALEVLAPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L ++SFHSLEDRLVK+F +S + + K + P+ +V Sbjct: 239 LSIISFHSLEDRLVKRFIRKQSKGPDVPHGVPLTEEQIRALGQAKMKPVGKALKPSDVEV 298 Query: 301 AFNRRSRSAKLRAGMRTVE 319 + N RSRS+ LR + E Sbjct: 299 SDNTRSRSSVLRVAEKLGE 317 >gi|82703617|ref|YP_413183.1| methyltransferase [Nitrosospira multiformis ATCC 25196] gi|123543903|sp|Q2Y630|RSMH_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82411682|gb|ABB75791.1| methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 316 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 167/315 (53%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 G H VLL++ + L P + +D TFG GG+SR + +IA DRDP A + Sbjct: 3 EAGKHTTVLLQEAVEALALKPDGIYVDGTFGRGGHSRLILERLGKNGRLIAFDRDPVACA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ E+F + +++S+LQ+ + +DGV+ DLGVSS Q++ RGFSF Sbjct: 63 VGRSF---GDERFCMVHSSYSRLQEVLRQLNIGQIDGVLLDLGVSSPQLEEATRGFSFSM 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQT 187 GPLDMRM G +A+ + A+ L ++ GEE+ A +IA AIVK R P T Sbjct: 120 EGPLDMRMDTTEGQTAAQWLASASEVQLEEVIKEYGEERFAKQIARAIVKARARQPLVTT 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +Q + + ++ + +PATR+FQA+RI++N E+E L+ L + LK GG L+V Sbjct: 180 SQLAAIVAAAIPARAREPKQNPATRTFQAIRIYLNQELERLSLALPQCVEMLKTGGRLVV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS----ITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F + +H+ F + K V P +V N Sbjct: 240 ISFHSLEDRIVKRFIREGANTDKLPKHLPLRADEVRRFSRASLQMVGKAVRPGVAEVECN 299 Query: 304 RRSRSAKLRAGMRTV 318 R+RSA +R R Sbjct: 300 PRARSAVMRVAERIN 314 >gi|67459296|ref|YP_246920.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2] gi|75536274|sp|Q4UL18|RSMH_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|67004829|gb|AAY61755.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2] Length = 306 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 124/302 (41%), Positives = 183/302 (60%), Gaps = 5/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +++A L P G+ LD TFGAGGYS++ + + ALDRDP + +E Sbjct: 5 HIPVMLNEMLANLAPKDGEFYLDCTFGAGGYSKAILESCDCYITALDRDPNVIKKAEEIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++Y E+F + F+ + +K DGVV DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 QNYGERFDFIETNFADSFAKLKEKKFDGVVLDLGVSSMQLDIADRGFSFLHDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + VN A K+L ++ G+E + RIA IV+ R++ +T L+ +++ + Sbjct: 125 GQGLSAEEFVNIAEEKELADVIYKYGDESFSRRIAKRIVEYRKTTRIDSTGKLAQIVRSS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + + +I PAT++FQA+RI++NNE+ EL + L + + LK G L+VVSFHSLEDR+V Sbjct: 185 I-GFRKGKIDPATKTFQAIRIYINNELGELERFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + + IT K + + ++V N R+RSAKLRA Sbjct: 244 KNFFKENSEKPVARSKYAKDDIAIDPDKWLKIITNKALATSDKEVGLNIRARSAKLRAAK 303 Query: 316 RT 317 + Sbjct: 304 KI 305 >gi|157825941|ref|YP_001493661.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford] gi|167011835|sp|A8GP28|RSMH_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157799899|gb|ABV75153.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford] Length = 306 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 183/306 (59%), Gaps = 5/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 + H+PV+L +V+ +L+P G+ LD TFGAGGYS++ + V+ALDRDP + Sbjct: 1 MLQTHIPVMLSEVLKVLDPKGGEFYLDCTFGAGGYSKAILESCDCYVVALDRDPNVIKKA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E ++Y E+F F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIKQNYVERFDFIATNFADSFAKLKEKQFDGIVLDLGVSSMQLDVADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA + VN K++ I+ G E + RIA +IV+ R++A +T L+ + Sbjct: 121 MRMSGQGFSAEEFVNTLEEKEIADIIYKYGNESFSRRIAKSIVEYRKTARIDSTGKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI++N+E+ EL + L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYINDELGELERFLMNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 D ++K FF S K +A + + IT K + P+ +++ N R+RSAKL Sbjct: 240 DMIIKNFFKENSEKPVARSKYAKDDIIIDPNKWLRIITNKALAPSDKEIRLNIRARSAKL 299 Query: 312 RAGMRT 317 R + Sbjct: 300 RTAKKI 305 >gi|227893331|ref|ZP_04011136.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227864746|gb|EEJ72167.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 330 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 109/325 (33%), Positives = 164/325 (50%), Gaps = 20/325 (6%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVI 62 + K M H VLL + I L P G + +DATFG GG++R ++ Sbjct: 12 NFKNMK-------FKHTSVLLHETIDNLKPKDGGLYVDATFGGGGHARYLLSKIDSGTLV 64 Query: 63 ALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGV 113 D+D +A+ + D + + L FS LQ + G+DG+ +DLGV Sbjct: 65 GFDQDEYAIKSAKLNFADLLEPDSEPKLKLVHDNFSNLQNDLVELGYTDGIDGIYYDLGV 124 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172 SS Q D DRGFS++ + LDMRM S A +VN + K+L IL G+EK + +I Sbjct: 125 SSPQFDQADRGFSYRYNARLDMRMDQSQDLDAYQLVNDLSQKELADILYQYGDEKFSRQI 184 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQG 231 AH I++RR+ P TT +L +I+ + + HPA +SFQALR+ VN E++ L Sbjct: 185 AHRIIERRKDKPIVTTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNRELDVLQAS 244 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L A K L+ GG + V++F S ED++VKK F S + + + + +K Sbjct: 245 LEEAIKILRPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPFVPDDLKPMLCLVNRK 304 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 + + ++ N RSRSAKLR + Sbjct: 305 PITASTSELENNNRSRSAKLRIAKK 329 >gi|194468375|ref|ZP_03074361.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23] gi|194453228|gb|EDX42126.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23] Length = 318 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 176/313 (56%), Gaps = 13/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A LN P +DAT G GG++++ + ++ + D+D A+ +E Sbjct: 5 KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + +++ +L + F ++ + V +++DLGVSS Q D RGFS+Q Sbjct: 65 HLKTAIEQQKLTLVEDNFRNIKTELNSYNVKRVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA +VVN+ + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFAS---RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F SG V +IP+ P F+ I KK +V + E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEP-DFKLINKKPIVASDEELAANHRA 303 Query: 307 RSAKLRAGMRTVE 319 SAKLR + E Sbjct: 304 HSAKLRIIEKIRE 316 >gi|312885181|ref|ZP_07744860.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC BAA-2122] gi|309367121|gb|EFP94694.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC BAA-2122] Length = 316 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 167/313 (53%), Gaps = 18/313 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + I L+ P + +D TFG GG+SR+ + ++DRDP A++ + Sbjct: 6 KHISVLLNESIDGLSIKPDGIYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +FS+ FS + DY VDGV+ DLGVSS Q+D +RGFSF K G Sbjct: 66 KI---QDPRFSIIHGPFSGIADYAETYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SGI S + +A + D+T ++ GE+K A RIA +IV R+ + P Sbjct: 123 PLDMRMDPSSGIPVSQWLLEAELDDITWVIREFGEDKHARRIAKSIVAYRENADNPPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI ++ S + HPATR+FQA RI++N+E++E+ L+ A L G L V Sbjct: 183 TGQLAKLISESAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGAVNILATKGRLSV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK F S + + K + P+ ++V N Sbjct: 243 ISFHSLEDRMVKHFIRKESKGPQVPHGIPLTEEQIQALGSANLKAVGKAIKPSSKEVDEN 302 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 303 TRSRSSVLRIAEK 315 >gi|256830379|ref|YP_003159107.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM 4028] gi|256579555|gb|ACU90691.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM 4028] Length = 320 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 177/312 (56%), Gaps = 11/312 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 DH+PV+LE+V+ + P PG +DAT G GG++ ++ + ++ LDRD A++ Sbjct: 5 SDHIPVMLEEVMHWIAPRPGGFYMDATLGLGGHAARLMELTNGQARLLGLDRDEQALAKA 64 Query: 75 QETMRDYKEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E L FS+ V +DGV+ DLGVSS+Q+D +RGFSF + G Sbjct: 65 GERLAQYGENVQLAHTSFQHFSRALREVGWDKLDGVIADLGVSSLQLDSPERGFSFLQDG 124 Query: 132 PLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G AS +VN A+ + L ++L GEE A RIA AIVK R++A +T Sbjct: 125 PLDMRMDPGSGGEPASVIVNGASFERLRQLLWDYGEEPMAGRIAGAIVKIRETARIDSTL 184 Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ ++ + +R HPAT++FQALR+ VN E+ E+ L L+ G + V Sbjct: 185 ELARIVAAAYPAKRRALSRNHPATKTFQALRLEVNQELREVEFFLERIVDHLRPGARICV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+ F S + R + + H + +K ++PT++++ N RS Sbjct: 245 ISFHSLEDRIVKRAFRKESSACLCPREYPVCQCGHTQKLRLPFRKPLIPTEDEMRANSRS 304 Query: 307 RSAKLRAGMRTV 318 RSAKLR R Sbjct: 305 RSAKLRVAERVD 316 >gi|307564714|ref|ZP_07627244.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A] gi|307346642|gb|EFN91949.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A] Length = 318 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 167/319 (52%), Gaps = 15/319 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 I HVPVLL++ + LN G + +D TFG GG+SR S ++ + D+D Sbjct: 2 IKTAESYHVPVLLKESVDGLNIRKGGIYVDVTFGGGGHSREILSHLSGDAHLYSFDQDLD 61 Query: 70 A---VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A + E+ ++ ++F+ ++ F L++++ +DG++ DLGVSS D +R Sbjct: 62 AEQNIKYLTESDKELSKKFTFVRSNFRYLKNWMRYYGVDKIDGLIADLGVSSHHFDDENR 121 Query: 124 GFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 GFSF+ SG A DV+N +DL R+ + GE KQ+ RIA AIVK R Sbjct: 122 GFSFRFDDAPLDMRMNKESGKQAFDVLNDYKEEDLARLFYVYGELKQSKRIAAAIVKGRA 181 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + +TT D ++ +F + + FQALRI VN E++ L + L SA + L Sbjct: 182 NKAIRTTTDFLKIVNP--FFMRVREKKDMAKLFQALRIEVNQEMQALTKMLTSAIELLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+++HSLEDRLVK F S + + + P F+ + KV++ T E++ Sbjct: 240 GGRLSVITYHSLEDRLVKNFMKSGNAEGKISQDFFGRIKTP--FKLVNNKVIIATDEEIE 297 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSAKLR R E Sbjct: 298 RNPRSRSAKLRIAERKHEE 316 >gi|295692684|ref|YP_003601294.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Lactobacillus crispatus ST1] gi|295030790|emb|CBL50269.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus crispatus ST1] Length = 315 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 159/314 (50%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG++R ++ D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLVGFDQDEYAIKS 60 Query: 74 GQETMR-----DYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L FS L+ G+DG+ +DLGVSS Q D DRG Sbjct: 61 AKLNFANLLQPDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L IL G+EK + +IAH IV+RR+ Sbjct: 121 FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I+ + + HPA +SFQALR+ VN+E++ L L A K L+ G Sbjct: 181 PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VK+ F S + + + + K +V + ++ Sbjct: 241 GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|260102637|ref|ZP_05752874.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus helveticus DSM 20075] gi|260083561|gb|EEW67681.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus helveticus DSM 20075] Length = 330 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 161/314 (51%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ Sbjct: 16 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKS 75 Query: 74 GQETMRD-----YKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L FS L+ G+DG+ +DLGVSS Q D DRG Sbjct: 76 AELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 135 Query: 125 FSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ Sbjct: 136 FSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDK 195 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQALR+ VN+E++ L L A + L+ G Sbjct: 196 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPG 255 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + +K + + ++ Sbjct: 256 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELEN 315 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 316 NNRSHSAKLRVAEK 329 >gi|161507311|ref|YP_001577265.1| cell division protein MraW [Lactobacillus helveticus DPC 4571] gi|263458154|sp|A8YUN6|RSMH_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160348300|gb|ABX26974.1| Cell division protein MraW [Lactobacillus helveticus DPC 4571] Length = 315 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 161/314 (51%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKS 60 Query: 74 GQETMRD-----YKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L FS L+ G+DG+ +DLGVSS Q D DRG Sbjct: 61 AELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ Sbjct: 121 FSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + HPA +SFQALR+ VN+E++ L L A + L+ G Sbjct: 181 PIVTTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + +K + + ++ Sbjct: 241 GRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELEN 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|189464532|ref|ZP_03013317.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM 17393] gi|189438322|gb|EDV07307.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM 17393] Length = 304 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 159/310 (51%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + + HVPVLL + +N P +D TFG GG+SR G ++ D+D A Sbjct: 3 NEELTYHVPVLLMPSVDGMNIRPDGTYIDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVDNPHFTFVRSNFRYLHNFLRYHNIEEVDSILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G +A+D++N + + L I + GE K + ++A IVK R Sbjct: 118 RFDGALDMRMNKRAGDTAADIINNYDEERLADIFYLYGELKNSRKLASVIVKARAGQKIT 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + + + P F+ + KV+VP ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDDAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|27904707|ref|NP_777833.1| hypothetical protein bbp206 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839463|sp|P59522|RSMH_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27904104|gb|AAO26938.1| hypothetical protein bbp_206 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 315 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 162/314 (51%), Gaps = 18/314 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PVLL + I L+ + +DATFG GG+S+ K + ++D+DP+A+ + Sbjct: 7 HTPVLLNETIQNLDIKNDGIYIDATFGYGGHSKEILKHLGKNGKLYSIDQDPYAIKIANK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F++ FS + Y + +G++ DLG+SSMQI+ +RGFSF GP Sbjct: 67 LKNDTR--FNIIHGKFSNILKYSNKNKIRGKVNGILLDLGMSSMQINNPNRGFSFISDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + GI A + + N+ L +L GEE + +IA+ I+ + T +L Sbjct: 125 LDMRMNPNTGIPAYMWLKKTNLTTLYHVLKKYGEEPFSKKIAYNIIAYNKKKTITRTLEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S +I ++ K R HPA R FQA+RI++N+EI EL Q L L GG L+++SFH Sbjct: 185 SKIITNSI-PIKKYRKHPARRVFQAIRIYINHEIYELQQALEHVLNILIPGGKLLILSFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR VKKF S + + + ITK + P+ ++ N R+ Sbjct: 244 SLEDRTVKKFMIKYSKPPFVPPGLAITETQLKSLANKQLKIITK--IFPSTIEIRKNPRA 301 Query: 307 RSAKLRAGMRTVER 320 SA LR + Sbjct: 302 HSAILRVAQKNNNE 315 >gi|303235618|ref|ZP_07322225.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN] gi|302484065|gb|EFL47053.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN] Length = 310 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 166/313 (53%), Gaps = 12/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I HVPVLL++ I LN P V +D TFG GG+S+ ++ + D+D Sbjct: 2 IKTAETYHVPVLLKESIDGLNINPDGVYVDVTFGGGGHSKEILSRLSKKGHLYSFDQDAD 61 Query: 70 AVSCGQETMRDYK-EQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 A + K E F+ ++ F L++ Y + +DG++ DLGVSS D +RGF Sbjct: 62 AEQNIKGINNIEKLENFTFVRSNFRYLKNWLRYYGVEQIDGLLGDLGVSSHHFDDEERGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM+ G +A+D++ Q +DL + + GE K + +IA AIV R++ P Sbjct: 122 SFRFDAPLDMRMNKRAGKTAADILLQYEEEDLANMFYLYGELKNSRKIAAAIVNSRKTKP 181 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+D S+++ F + + FQALRI VN E+ L + L A + LK G Sbjct: 182 ILTTKDFQSVVEP--LFKREREKKEMAKLFQALRIEVNQEMAALKEMLIGASEVLKPNGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+++HSLEDR+VK + + + + P F+ I KV+VP+Q + N Sbjct: 240 LSVITYHSLEDRIVKNIMKTGNIEGKVEQDFFGKINSP--FKLINNKVIVPSQSEQKENP 297 Query: 305 RSRSAKLRAGMRT 317 RSRSAKLR + Sbjct: 298 RSRSAKLRIAEKI 310 >gi|296532828|ref|ZP_06895500.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC 49957] gi|296266841|gb|EFH12794.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC 49957] Length = 311 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 181/310 (58%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75 + H+PV+L +V+ L P G +D TFG GGY+R+ + + A DRDP A++ GQ Sbjct: 1 MSGHLPVMLAEVLDNLAPRAGGAYVDGTFGGGGYARAILGRAACTLHAFDRDPDAIARGQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + +L + F ++++ + ++ VDGVV DLGVSS Q+D +RGFSF+ GP Sbjct: 61 ALLAESAGRLTLIERRFGEMREALAERGVTTVDGVVLDLGVSSFQLDQAERGFSFRFDGP 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM +G SA+D+VN +L IL LGEE+ + RIA +V R+ AP +TT L Sbjct: 121 LDMRMEKAGPSAADLVNTLPEAELADILWQLGEERHSRRIARTLVAARREAPIETTGRLR 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 SLI V + I ATRSFQALR+ VN+E+ E+ +GL +A L GG L+VV+FHS Sbjct: 181 SLIH-AVMPRDPSGIDSATRSFQALRLKVNDELGEVERGLEAAASLLAPGGRLVVVAFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 LEDR+VK+F +G+ PS F+ + + P ++A N R+RS Sbjct: 240 LEDRIVKRFMQQAAGRGPGASRHDPSALLGGGQKPRFRLVANNALRPGAAELAANPRARS 299 Query: 309 AKLRAGMRTV 318 A+LR + Sbjct: 300 ARLRTLEKLE 309 >gi|331002506|ref|ZP_08326024.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410322|gb|EGG89756.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae oral taxon 107 str. F0167] Length = 311 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 164/309 (53%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 +H VLL++VI LN +D T G GG++ K +I +D+D A++ Sbjct: 1 MTFNHKSVLLDEVIESLNIKADGYYVDGTLGGGGHALEVVKRLKTGKLIGIDQDMDAINA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY + + + + +++ + + ++ + DLGVSS Q+D +RGF+++ Sbjct: 61 ATQRLIDYSKSVIIIRDNYVNIENILKKENIEKVDGIYIDLGVSSYQLDNAERGFTYRFD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ASD+VN+ + +L I+ GE++ A IA IV+ R +TT Sbjct: 121 APLDMRMDDRNELKASDIVNEYSESELFHIIRDYGEDRFAKNIAKHIVEYRNKKRIETTF 180 Query: 190 DLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ ++ HPA R+FQA+RI +N E+E L + LK GG L V+ Sbjct: 181 ELVDIIKASIPMKIQVTGGHPAKRTFQAIRIELNKELEVLTDSINVMIDLLKPGGRLSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+ F + + + + + IT+K ++P +E++ N R++ Sbjct: 241 TFHSLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAILPGEEELEENSRAK 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVFEK 309 >gi|294646197|ref|ZP_06723851.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a] gi|292638415|gb|EFF56779.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a] Length = 309 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 8 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF Sbjct: 68 -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ GI+A+D+VN + L +L + GE K + ++A IVK R + Sbjct: 123 RFDGALDMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIR 182 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 183 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 298 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 299 RSAKLRIAEK 308 >gi|116628390|ref|YP_821009.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMD-9] gi|68565436|sp|Q5LY91|RSMH_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122267015|sp|Q03J09|RSMH_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116101667|gb|ABJ66813.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus thermophilus LMD-9] gi|312279018|gb|ADQ63675.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus thermophilus ND03] Length = 316 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+QE++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|119773487|ref|YP_926227.1| S-adenosyl-methyltransferase MraW [Shewanella amazonensis SB2B] gi|262826482|sp|A1S2F1|RSMH_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119765987|gb|ABL98557.1| methyltransferase [Shewanella amazonensis SB2B] Length = 313 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVDGLNIRADGIYIDGTFGRGGHSREVLSRLGVDGRLIAIDRDPQAIKAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL +YV + +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FANDSR--FQIVHGGFGQLANYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A+ + +A ++D+ + GEE+ A IA I R+ PF T+ L Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEERNARHIARCIAADREKTPFTRTKQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A K L G L ++SFH Sbjct: 185 ADLIARVAKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPHGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + A + K + P+ ++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGEELPHGLPVTEAQLNKSRTLMPVGKAMKPSDVEIEQNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|313890654|ref|ZP_07824281.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus SPIN 20026] gi|313120965|gb|EFR44077.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus SPIN 20026] Length = 316 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HITVLLHETVDMLQVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + + F L+ + GVD + ++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDFIDGILYDLGVSSPQLDERERGFSYRQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A VVN + DL RI GE++ + ++A I + R P +TT + Sbjct: 127 PLDMRMDSDASLTAYQVVNDYSFNDLVRIFFRYGEDRFSKQVARKIEQARAIKPIETTAE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + L+ A L G + V++ Sbjct: 187 LAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDVLALEGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + F+ +++K ++P++E++A N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASVVDVPKGLPFIPEEMQPKFELVSRKPILPSKEELAENNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|320161732|ref|YP_004174957.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1] gi|319995586|dbj|BAJ64357.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1] Length = 312 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 173/314 (55%), Gaps = 12/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H PVL +++I L P +DAT GAGG++ + ++ LD DP Sbjct: 1 MSEASVPHRPVLYQEIILALRPHSPGRYVDATVGAGGHAAGILEASSPKGELLGLDPDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + + + E+ L QA++ L++ + + VDG+VFDLGVSSMQ+D +RGFS Sbjct: 61 ALALASQRLSIFGERVHLVQASYVTLKEQLAVLGWQEVDGIVFDLGVSSMQLDTPERGFS 120 Query: 127 FQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F G LDMR + + D+VN ++L RIL GEE+ A RIA AIV+ R Sbjct: 121 FSAEGKLDMRFDPCQDTTAEDLVNHLPEEELARILWEYGEERYARRIARAIVQARPLHTT 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + +L + + K RIHPATR+FQALRI VN E+E + L A + LKAGG L Sbjct: 181 RELAELVAR----IVGGKRERIHPATRTFQALRIAVNRELEAIETVLPQAVECLKAGGRL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDRLVK FF S + + + H A + +T+ + + E+V N Sbjct: 237 AVISFHSLEDRLVKHFFRRESRDCLCPPEQPVCTCGHKASLREVTRHPIEASDEEVRENP 296 Query: 305 RSRSAKLRAGMRTV 318 R+RSA+LR + Sbjct: 297 RARSARLRVAEKIA 310 >gi|295086283|emb|CBK67806.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens XB1A] Length = 304 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ GI+A+D+VN + L + + GE K + ++A IVK R + Sbjct: 118 RFDGALDMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKTRSGQNIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|260775374|ref|ZP_05884271.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC BAA-450] gi|260608555|gb|EEX34720.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC BAA-450] Length = 316 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 165/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLL + I L P +D TFG GG+SR + ++DRDP A++ Sbjct: 3 EEFKHISVLLHESIDGLAIKPDGTYIDGTFGRGGHSRQILSQLGEQGRLFSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +F++ FS + Y ++ VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAQTI---DDPRFTIIHGPFSGMAKYAEERGLVGQVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R++ Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A K + P++++V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEAQIKALGSANLKPIGKAIKPSKQEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DINTRSRSSVLRIAEK 315 >gi|188585922|ref|YP_001917467.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus JW/NM-WN-LF] gi|262825152|sp|B2A2G4|RSMH_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|179350609|gb|ACB84879.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus JW/NM-WN-LF] Length = 315 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 173/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 +H PV++EK I LL P +VI+D T G G+S ++ +D+DP A Sbjct: 1 MNFNHEPVMIEKTIELLKPESAQVIVDGTMGGAGHSLRIINSLPPEGILVGIDQDPDAYE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ + Y + +F F ++ VDG++ DLGVSS Q+D DRGF++Q+ Sbjct: 61 AGKSLLEAYGNKAKVFNDNFVNIKHICERIGIHYVDGILLDLGVSSYQLDNKDRGFTYQE 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + PLDMRM I+AS+VVN + + L I+ GEEK A RIA IV+ RQ TT Sbjct: 121 NAPLDMRMDKSQKITASEVVNTYSEQKLAEIIREYGEEKWAQRIAQFIVQARQDQEINTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 Q+L +I+ + + + HPA R+FQALRI VN E++ L ++ + L+ G +V Sbjct: 181 QELVKVIKAAIPKGARKSGPHPAKRTFQALRIHVNGELDSLRTAIQEGIRLLRGKGRFVV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK+ F + + + I A + +TKK ++P+Q ++ N R+ Sbjct: 241 ITFHSLEDRIVKQEFKKLAQTCVCPTKLPICQCKGEATVKLLTKKPLLPSQGEIEINPRA 300 Query: 307 RSAKLRAGMR 316 RSAKLRA R Sbjct: 301 RSAKLRAVER 310 >gi|312863799|ref|ZP_07724037.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis F0396] gi|311101335|gb|EFQ59540.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis F0396] Length = 316 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLRSNLEALGVFEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+QE++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|27364047|ref|NP_759575.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio vulnificus CMCP6] gi|37678790|ref|NP_933399.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus YJ016] gi|320157431|ref|YP_004189810.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O] gi|30173038|sp|Q8DEK2|RSMH_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42559438|sp|Q7MNV9|RSMH_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27360164|gb|AAO09102.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus CMCP6] gi|37197531|dbj|BAC93370.1| predicted S-adenosylmethionine-dependent methyltransferase [Vibrio vulnificus YJ016] gi|319932743|gb|ADV87607.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O] Length = 316 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 167/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 DTFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGEHGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---DDPRFTIIHGPFSGMANYAEQYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---AP 184 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R+ P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAHREDETKEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTSQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A K ++PT +++ Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTEAQIKALGSANMKTVGKAIMPTAQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 ELNPRSRSSVLRIAEK 315 >gi|294142812|ref|YP_003558790.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12] gi|20139165|sp|Q9F1N8|RSMH_SHEVD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|11761327|dbj|BAB19194.1| MraW [Shewanella violacea] gi|293329281|dbj|BAJ04012.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12] Length = 313 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 122/316 (38%), Positives = 174/316 (55%), Gaps = 14/316 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + +A LN P + +D TFG GG+SR K +IA+DRDP Sbjct: 1 MSQEFS-HLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSREVLKHLGDNGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ D + FS+ F QL DYV D VDGV+ D GVSS Q+D +RGF Sbjct: 60 AIIAAEQFADDAR--FSIVHGGFGQLADYVEDLGLKGKVDGVLLDFGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A++ + + ++D+ + GEEK + IA I R P Sbjct: 118 SFLRDGPLDMRMDNSQGQTAAEWIARTEIEDMAWVFKTYGEEKNSRHIARCIAADRDKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T++L+ LI + + SK HPATR FQA+RI++N+E+E++ Q L A K L G Sbjct: 178 FLRTKELADLIAR-ICKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALKVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F S + + + A + + K P+ E+V Sbjct: 237 LSVISFHSLEDRIVKRFIRRHSQGMSVPHGLPITEAEINKTRLLKAVGKATKPSTEEVEM 296 Query: 303 NRRSRSAKLRAGMRTV 318 N+RSRS+ LR R Sbjct: 297 NKRSRSSVLRVAERLE 312 >gi|307824823|ref|ZP_07655046.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum SV96] gi|307734181|gb|EFO05035.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum SV96] Length = 308 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 178/310 (57%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV--SC 73 +H+PV+ + + L V LD TFG GG+S+ + ++A DRD A+ Sbjct: 2 EHLPVMFAEALQQLAIKEDGVYLDCTFGRGGHSQGILNLLGPSGRLLAFDRDLDAINSDY 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q + D + F L FS L++ V + VDG++ DLGVSS Q+D +RGFSF + Sbjct: 62 AQAMLEDKR--FKLKHTHFSALENIVVSEGLAGKVDGILMDLGVSSPQLDNPERGFSFLR 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG++A + + K L ++L GEE+ A RIA AIV++R +P TT Sbjct: 120 DGPLDMRMDGNSGVTAEQWLAGVDEKALVKVLFEYGEERFARRIARAIVEKRAVSPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++L+ LI+ V + ++ HPATRSFQA+RI +N+E++EL L+ + + LK GG L+V+ Sbjct: 180 RELAKLIEDVVPGKEKHK-HPATRSFQAIRIEINSELDELKAVLQQSARILKPGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + SG + A IT K + +++A N R+R Sbjct: 239 SFHSLEDRIVKRFIRAESGAKYNPGKLPIKEIDIAKGILKITGKALKAGAQEIAQNPRAR 298 Query: 308 SAKLRAGMRT 317 SA +R R Sbjct: 299 SAVMRVAERV 308 >gi|254449029|ref|ZP_05062483.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015] gi|198261423|gb|EDY85714.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015] Length = 309 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 123/316 (38%), Positives = 171/316 (54%), Gaps = 17/316 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++A+ +HVPVLL + I L V LD TFG GG+S + + A+D Sbjct: 1 MAAAL-----EHVPVLLAEAIEGLRIEENGVYLDGTFGRGGHSAAILSQLGVDGQLHAID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RD AV Q+ + +FS+ FSQL Y + ++GV+ D+GVSS QID Sbjct: 56 RDRAAVDVAQQRFAE-DARFSIHHGEFSQLDQYCEQRGLAGRLNGVLLDIGVSSPQIDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSFQ GPLDMRM G +A+ + A ++ R+L GEE+ A RIA AI + Sbjct: 115 GRGFSFQFDGPLDMRMDQTRGETAAQWLVSAEASEIARVLKEFGEERNAKRIASAIKRTL 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q +TTQ L ++I+ ++ HPATRSFQALRI VN+E+ L + L +A + L Sbjct: 175 QERSIETTQGLVAVIESATRVRDRHK-HPATRSFQALRIQVNDEMGALRRALDAAVRMLA 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V+SFHSLEDR+VK+F S R + H +S+ K + + ++ Sbjct: 234 PGGRLAVISFHSLEDRMVKRFIRDESTPREVARGLPQKTDH-IRLKSV-GKAIKAGESEL 291 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSA LR R Sbjct: 292 KKNPRARSAVLRVAER 307 >gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 339 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 153/325 (47%), Positives = 200/325 (61%), Gaps = 4/325 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 HVPVLL +VI L P G+ I+D TFGAGGY+R+ G+ VIA+DRDP A+ + Sbjct: 16 TPHVPVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGAEVIAIDRDPTAIETARAL 75 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + F + + D+ +DG+V D+GVSSMQID +RGFSFQK GPLDM Sbjct: 76 AGESNGRLTPVAGRFGAMGSLLSDRQGAIDGIVLDVGVSSMQIDKAERGFSFQKDGPLDM 135 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVVN +V DL RI LG+E+ A R A AIV RR++ PF T DL+ ++ Sbjct: 136 RMGNHGATAADVVNTLSVGDLARIFNFLGDERHAGRAARAIVARREAKPFVRTLDLAGVV 195 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V K+ +I PATR FQALRIFVN+E+ ELA+ L +AE LK GG L+VVSFHSLED Sbjct: 196 GKAVGRGKHEKIDPATRCFQALRIFVNDELGELARALVAAEGLLKPGGRLVVVSFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+FF R+G RH+ F + K V ++ + A N R+RSAKLR G Sbjct: 256 RIVKRFFLDRAGTQGGSRHLPDVMPEVPTFSARN-KAVAASEREAADNPRARSAKLRFGT 314 Query: 316 RTVERSIEDD-SFVHLPRLPTLSQF 339 R D +F LP L LS+ Sbjct: 315 RLEAAPRSGDLAFASLPDLADLSRI 339 >gi|170718775|ref|YP_001783958.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336] gi|263456057|sp|B0US59|RSMH_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168826904|gb|ACA32275.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336] Length = 321 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 MS + +H VLL + + L + +D TFG GG+SR S +IA+D Sbjct: 1 MSMQDTFSSPEHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A+ Q +F + +FS + D +DG++ DLGVSS Q+D Sbjct: 61 RDPQAIQVAQNI---QDPRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA++ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSATEWLRQVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + L+ +Q K+ HPATRSFQA+RIF+N+E++EL + L A Sbjct: 178 KSAVQSGAEPLNRTLQLAELIAQSVPFKDKYKHPATRSFQAIRIFINSELDELEKVLNGA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293 L G L ++SFHSLEDR+VK F +S + + Q + K + Sbjct: 238 LNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPVGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 +PT++++A N RSRSA LR R Sbjct: 298 MPTEQEMAANVRSRSAVLRIAERI 321 >gi|110833451|ref|YP_692310.1| methyltransferase [Alcanivorax borkumensis SK2] gi|123345754|sp|Q0VS10|RSMH_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110646562|emb|CAL16038.1| methyltransferase [Alcanivorax borkumensis SK2] Length = 312 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 167/313 (53%), Gaps = 8/313 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 T H PV+LE+V+ + +D TFG GG+SR+ +I +DRDP Sbjct: 2 TTEDTQYAHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLSRLGENGRLIGIDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ GQ+ + +F + F L V + +DG++ DLGVSS Q+D RGFS Sbjct: 62 QAIAAGQQ-LAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM G S ++ ++ A KD+ +L GEE+++ IA I + R+ P Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSYAAEKDIANVLYRYGEERKSRWIAKRICETRKEQPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ LI+ + ++ + HPATRSFQALRI +N E++ L Q L + + L GG L Sbjct: 181 TRTLQLADLIESVLGRNEQGK-HPATRSFQALRIHINGELDALDQVLEQSLETLAIGGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR+VK F SG+ R +P KV+ ++ ++ N R Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGDELPQRLEPVGKVMRASKAELKVNVR 299 Query: 306 SRSAKLRAGMRTV 318 SRSA LR + Sbjct: 300 SRSAVLRIAEKVA 312 >gi|68565437|sp|Q5M2U6|RSMH_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVNGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+QE++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|269123556|ref|YP_003306133.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM 12112] gi|268314882|gb|ACZ01256.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM 12112] Length = 309 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 171/308 (55%), Gaps = 10/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H+PVL ++V+ + + +D T G GG+S S +IA+D+D A+ Sbjct: 1 MEYHLPVLYDEVLENIIDKKDLIYMDCTLGGGGHSEGILSNSTDNSKLIAIDQDENAIKY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E ++ + + S+F+ F L VD ++ D+GVSS Q+D RGFS++K Sbjct: 61 ASERLKKFGNKVSIFKNNFENLDIVAYLAGFDKVDRILMDIGVSSKQLDDDKRGFSYRKE 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S SA +V+N +++ IL GEE ++ RIA IV+ R++ +TT Sbjct: 121 AKLDMRMDESQKLSAYEVINNYKEEEIADILYKYGEEPKSRRIAKYIVEYRKNKSIETTI 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++ K + K+ + HPA R+FQA+RI+VN E+E L + L + + L GG L+V++ Sbjct: 181 ELADIVIKAI--GKSMKKHPAKRTFQAIRIYVNRELEVLEKALDKSIELLNPGGRLLVIT 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F I + + + +T+K +V ++++ N R+ S Sbjct: 239 FHSLEDRIVKEKFRKYENPCTCPYDLPICKCGNKSKGKVLTRKPIVSKEKELEANNRAHS 298 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 299 AKLRVFIK 306 >gi|238797714|ref|ZP_04641209.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia mollaretii ATCC 43969] gi|238718466|gb|EEQ10287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia mollaretii ATCC 43969] Length = 320 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 174/321 (54%), Gaps = 15/321 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 + I H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NKKIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ + +FS+ FS+L YV + +DG++ DLGVSS Q+D + Sbjct: 64 DPQAIEAAKSI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQE 298 G L V+SFHSLEDR+VK F RS + + A T K + +P Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADA 299 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +VA N R+RS+ LR R E Sbjct: 300 EVAENPRARSSVLRFAERIKE 320 >gi|227877318|ref|ZP_03995391.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01] gi|256842880|ref|ZP_05548368.1| methylase MraW [Lactobacillus crispatus 125-2-CHN] gi|256848746|ref|ZP_05554180.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US] gi|262045846|ref|ZP_06018810.1| methylase MraW [Lactobacillus crispatus MV-3A-US] gi|312977602|ref|ZP_07789349.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05] gi|227863174|gb|EEJ70620.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01] gi|256614300|gb|EEU19501.1| methylase MraW [Lactobacillus crispatus 125-2-CHN] gi|256714285|gb|EEU29272.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US] gi|260573805|gb|EEX30361.1| methylase MraW [Lactobacillus crispatus MV-3A-US] gi|310895341|gb|EFQ44408.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05] Length = 315 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 159/314 (50%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKS 60 Query: 74 GQETMR-----DYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L FS L+ G+DG+ +DLGVSS Q D DRG Sbjct: 61 AKLNFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L IL G+EK + +IAH IV+RR+ Sbjct: 121 FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I+ + + HPA +SFQALR+ VN+E++ L L A K L+ G Sbjct: 181 PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VK+ F S + + + + K +V + ++ Sbjct: 241 GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|171778125|ref|ZP_02919382.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283107|gb|EDT48531.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 339 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 163/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++ A D+D A+ Q Sbjct: 30 HITVLLHETVDMLDIEPDGIYVDATLGGAGHSEYLLSKLGPNGHLYAFDQDQTAIDNAQI 89 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K Q + + F L + +DG+++DLGVSS Q+D +RGFS++K Sbjct: 90 RLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 149 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A DVVN + DL RI GE+K + +IA I + RQ P +TT + Sbjct: 150 PLDMRMNREQDLTAYDVVNTYDYYDLVRIFYKYGEDKFSKQIARKIEQARQEKPIETTTE 209 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 210 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRISVIT 269 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + + +K ++P QE++ N RS SA Sbjct: 270 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLTLVNRKPILPRQEELEANNRSHSA 329 Query: 310 KLRAGMRT 317 KLR + Sbjct: 330 KLRVARKV 337 >gi|317496841|ref|ZP_07955171.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895853|gb|EFV18005.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 312 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 96/310 (30%), Positives = 172/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ Sbjct: 1 MEFKHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +K++ ++ + + + + D + VDG++ DLGVSS Q+D +RGF++++ Sbjct: 61 ASTKRLESFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDDKERGFTYRE 120 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN+ + +L I+ GEEK A IA IV +R+ +P +TT Sbjct: 121 DVPLDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ + + HPA ++FQA+RI N E++ L + + L GG L + Sbjct: 181 GQLIEVIKSAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK+ F + + + + +T+K ++P +E++ +N+R+ Sbjct: 241 ITFHSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRA 300 Query: 307 RSAKLRAGMR 316 +S+KLR R Sbjct: 301 KSSKLRVFER 310 >gi|238927330|ref|ZP_04659090.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Selenomonas flueggei ATCC 43531] gi|238884612|gb|EEQ48250.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Selenomonas flueggei ATCC 43531] Length = 312 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 164/312 (52%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 T HV VLLE+ + LN P + +DAT G G++R +I +D+D A++ Sbjct: 2 TEFHHVSVLLEETVGALNVMPDGIYVDATLGGAGHARRIAAHLSEHGRLIGIDQDETAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + D + Q SL + F L + VDGV+FDLGVSS QID +RGFS+ + Sbjct: 62 AAHERLADVRCQVSLVRDNFRNLSAILAAEGVFSVDGVLFDLGVSSPQIDTPERGFSYMQ 121 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM SA DVVN + LT I GEE+ A RIA I K RQ+ P TT Sbjct: 122 DAPLDMRMDQRARLSAYDVVNAYTAEQLTEIFYTYGEERWAKRIAAFIEKERQAHPIATT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 DL ++I + V + HPA R FQA+RI VN+E+ L L +A AL+ GG L V Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQAIRIEVNDELGILEGALSAAVNALRIGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + + H + H + + K +E+ A N R+ Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPVCVCGHTPEVRLV-GKAKAAGKEECAANTRA 300 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 301 RSAKLRVAEKIK 312 >gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis HTCC2594] gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594] Length = 315 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 136/311 (43%), Positives = 200/311 (64%), Gaps = 10/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77 HVPVLL++V+A L+P PG V++DATFGAGGY+R+ G+ V A DRDP A++ G + Sbjct: 7 HVPVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGATVHAFDRDPDAIAAGSQWPE 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + L FS++ + + VDGV D+GVSSMQ+D RGF+F GPLD Sbjct: 67 TKEEPPRLVLHPRRFSEMVHALAEAGVAQVDGVAMDIGVSSMQLDQAQRGFAFSADGPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D +N A +++ +L GEE+Q+ R+A AI+ R P +TT DL+ + Sbjct: 127 MRMSQHGPSAADFLNSAEAEEIADVLYQYGEERQSRRVARAIIAAR---PLETTGDLARV 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++K + + PATR+FQA+RI VN E++EL +GL +AE L++GG L VVSFHSLE Sbjct: 184 VRKALGYRVGAPKDPATRTFQAVRIHVNGELDELREGLHAAEHLLRSGGRLAVVSFHSLE 243 Query: 255 DRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F S SGK R++ ++ PA+F I+ K + P++ ++A N R+RS+ LR Sbjct: 244 DRIVKRFLQSASGKAGGTSRYLPQTDVSPAIFSDIS-KAIRPSEAEIARNPRARSSTLRH 302 Query: 314 GMRTVERSIED 324 RT ++ Sbjct: 303 ATRTDAPPRKE 313 >gi|222153542|ref|YP_002562719.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J] gi|262825652|sp|B9DV78|RSMH_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222114355|emb|CAR43080.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J] Length = 316 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSKLNDNGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + + +A F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLKSYVDRGMVTFIKANFRHLKSELNALGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A VVN +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDSDAALTAYHVVNDYPFQDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTAE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMTMLALNGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + F+ +T+K ++P+QE++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGIPFIPEDMQPKFELVTRKPILPSQEELLANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKV 314 >gi|238784576|ref|ZP_04628583.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia bercovieri ATCC 43970] gi|238714542|gb|EEQ06547.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia bercovieri ATCC 43970] Length = 320 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 174/321 (54%), Gaps = 15/321 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 + I H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NKKIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ + +FS+ FS+L YV + +DG++ DLGVSS Q+D + Sbjct: 64 DPQAIEAAKSI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPTRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAD 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQE 298 G L V+SFHSLEDR+VK F RS + + A T K + +P Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADA 299 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +VA N R+RS+ LR R E Sbjct: 300 EVAENPRARSSVLRFAERIKE 320 >gi|254509146|ref|ZP_05121246.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16] gi|219547943|gb|EED24968.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16] Length = 316 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 165/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGDNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAAKI---DDPRFTIIHGPFSGMAEYAAEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R++ Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++ +V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSANMKPIGKAIKPSKNEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EVNARSRSSVLRIAEK 315 >gi|322373647|ref|ZP_08048183.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150] gi|321278689|gb|EFX55758.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150] Length = 316 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQG 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ++A +VVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+QE++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|332557530|ref|ZP_08411852.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N] gi|332275242|gb|EGJ20557.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N] Length = 331 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 144/329 (43%), Positives = 199/329 (60%), Gaps = 5/329 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 1 MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQ Sbjct: 60 LALKMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 K GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRHGGRLAVV 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+F RS G+ R+ + A F ++ + P + ++A N R+R Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRAR 298 Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 SA+LR G+RT + + D + P +P Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327 >gi|163751816|ref|ZP_02159032.1| S-adenosyl-methyltransferase [Shewanella benthica KT99] gi|161328301|gb|EDP99462.1| S-adenosyl-methyltransferase [Shewanella benthica KT99] Length = 313 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 170/316 (53%), Gaps = 14/316 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+ VLL + +A LN + +D TFG GG+SR K +IA+DRDP Sbjct: 1 MSQEFS-HLSVLLSETVAGLNIKQDGIYIDGTFGRGGHSREVLKHLGGNGRLIAIDRDPQ 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ ++ D + FS+ F QL YV D +DGV+ D GVSS Q+D +RGF Sbjct: 60 AIEAAKQFADDSR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G +A++ + +A ++D+ + GEEK + IA I RQ P Sbjct: 118 SFLRDGPLDMRMDNSQGETAAEWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADRQKTP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T++L+ LI + + SK HPATR FQA+RI++N+E+E++ Q L A L G Sbjct: 178 FLRTKELADLIAR-ICKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALVVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F + + + + K P+ E+V Sbjct: 237 LSVISFHSLEDRMVKRFIRRNCQGKSVPHGLPITEDELDKTRLLKSIGKATKPSAEEVER 296 Query: 303 NRRSRSAKLRAGMRTV 318 N+R+RS+ LR R Sbjct: 297 NKRARSSILRVAERLE 312 >gi|167765841|ref|ZP_02437894.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1] gi|167712558|gb|EDS23137.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1] gi|291559197|emb|CBL37997.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SSC/2] Length = 312 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 96/310 (30%), Positives = 172/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H+ VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ Sbjct: 1 MEFKHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +K++ ++ + + + + D + VDG++ DLGVSS Q+D +RGF++++ Sbjct: 61 ASTKRLEPFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDEKERGFTYRE 120 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN+ + +L I+ GEEK A IA IV +R+ +P +TT Sbjct: 121 DVPLDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ + + HPA ++FQA+RI N E++ L + + L GG L + Sbjct: 181 GQLIEVIKGAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK+ F + + + + +T+K ++P +E++ +N+R+ Sbjct: 241 ITFHSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRA 300 Query: 307 RSAKLRAGMR 316 +S+KLR R Sbjct: 301 KSSKLRVFER 310 >gi|295106887|emb|CBL04430.1| S-adenosyl-methyltransferase MraW [Gordonibacter pamelaeae 7-10-1-b] Length = 323 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 14/322 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S H PVLL + + N P + +DAT G G+S K+ G +I +D Sbjct: 1 MTSEYQQQEFQHTPVLLAECLEQSNLKPQQTFVDATLGGAGHSLEMAKLIGPGGTLIGID 60 Query: 66 RDPFAVSCGQETMRDYKE----QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 +D A++ + + + L + F + D + GVD +FDLGVSS+QI Sbjct: 61 QDEVALAAARSRLESLPDGQRPNLELLRGNFGDMDDLLVSAEVPGVDAFLFDLGVSSVQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D RGFSF+++GPLDMRM + +++VN N DLTRI+ +EK ASRIA I Sbjct: 121 DTPSRGFSFKENGPLDMRMDPGKTTLTAAEIVNTYNAADLTRIIRAYSDEKWASRIADFI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R + +T++ L +I+ + S + HPA R+FQALRI VN+E++ L +GL +A Sbjct: 181 VRSRANGRIETSEQLVDVIKAAIPASARRAGGHPAKRTFQALRIEVNSELDVLRRGLDAA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVV 294 + L GG L+V+S+HSLEDR+VK+ F + + + + + +T+K ++ Sbjct: 241 VRWLNPGGRLVVISYHSLEDRIVKETFNAYANRCTCPPDLPVCVCGKEPILDLVTRKPLL 300 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 PT ++ N R+RSAKLR + Sbjct: 301 PTAGEIERNPRARSAKLRVARK 322 >gi|312898967|ref|ZP_07758355.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis F0359] gi|310620129|gb|EFQ03701.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis F0359] Length = 310 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 170/306 (55%), Gaps = 8/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HV VL E+ I + P + +D T G GG+SR+ +I LD+D A+ E Sbjct: 5 HVSVLREETIHAVLGDPAGIYVDCTLGGGGHSRALADLLVKDGLIIGLDQDEDAIRAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M+D +F+ Q F L + + D + ++FDLGVSS Q+D +RGFS+Q GPL Sbjct: 65 RMQDAPCRFTAVQRNFRYLGEVLDDLNIPTVDGIMFDLGVSSYQLDNPERGFSYQHDGPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA DV+N + DL RI+ GEE+ A RIA IVK R+ PF+ T++L Sbjct: 125 DMRMDRHGKKSAYDVINAYDEADLYRIIKDYGEERWAKRIASFIVKARREKPFERTEELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + + HPA R+FQA+RI VN+E++ L A LK GG + +++FH Sbjct: 185 RVIKQAIPAGARKDGPHPAKRTFQAVRIEVNDELKILQDTFEIAANRLKPGGHIGIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+ K+ + + H+ H + K + P++E++ N R+RSAKL Sbjct: 245 SLEDRIAKQTLRKLATGCICPPHIPVCTCHHEAILKVKGKGIGPSKEELELNPRARSAKL 304 Query: 312 RAGMRT 317 R G R Sbjct: 305 RVGTRI 310 >gi|258404866|ref|YP_003197608.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM 5692] gi|257797093|gb|ACV68030.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM 5692] Length = 332 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 10/315 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL +V+ L P PG LD T G GG++ + + + V+ LDRD A+ + Sbjct: 18 HQSVLLAEVLQALKPRPGGRYLDGTLGLGGHAEAILEHAPDSEVLGLDRDGAALDAAEAR 77 Query: 78 MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ + Q +FS+ D + + VDG + DLGVSS+Q+D +RGFSF GPLD Sbjct: 78 LDRFGDRVHMAQISFSRFVSALDQLGWETVDGALIDLGVSSLQLDSPERGFSFLHDGPLD 137 Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM A ++N+A+ + L RI+ GEE A RIA IV R+ P +TT L+ Sbjct: 138 MRMDSGMGVPPAKSLLNKASQETLRRIIRDYGEEPMAGRIAKRIVMTREKTPLETTLQLA 197 Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++++ + +R HPAT++FQALRI VN E+EEL L + L GG L V+SF Sbjct: 198 HVVEQAYPAKRRAQSRNHPATKTFQALRIAVNKELEELEAFLEAIPDRLCVGGRLAVISF 257 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK + + I + Q +TKK ++P+ E++ N RSRSA Sbjct: 258 HSLEDRIVKHRLRREARGCRCPKEQPICVCGYRPRLQVLTKKPLLPSAEEMEANSRSRSA 317 Query: 310 KLRAGMRTVERSIED 324 KLR R D Sbjct: 318 KLRVAERIEPEYPHD 332 >gi|291547133|emb|CBL20241.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. SR1/5] Length = 311 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 10/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + I L P + +D T G G++ CK I +D+D A+ Sbjct: 1 MEFKHKSVLLNETIDGLRVKPDGIYVDGTLGGAGHATEVCKKLSAKGRFIGIDQDQDAII 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + Q ++ ++ + + D + + VDG++ DLGVSS Q+D +RGFS++ Sbjct: 61 AASERLSAF-NQVTIIRSNYCYMADELRSRGIEKVDGILLDLGVSSYQLDNEERGFSYRY 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A D+VN ++L RI+ GE+K A IA IV R+ AP +TT Sbjct: 120 DSPLDMRMDRRQSRTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVAAREQAPIRTT 179 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I+ + HPA R+FQA+RI +N E++ L L L GG + + Sbjct: 180 GELTEIIRGAIPMKIQATGGHPAKRTFQAIRIELNRELDVLRDSLDGMIDLLDDGGRICI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + IT+K ++P +E++ N RS Sbjct: 240 ITFHSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPGKEEMEENPRS 299 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 300 KSAKLRIFER 309 >gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3] gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3] Length = 322 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 140/312 (44%), Positives = 184/312 (58%), Gaps = 5/312 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T H PVLL +VI L P PG V++DATFGAGGY+R+ G+ VI LDRDP Sbjct: 2 TEAPHAPVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGAQVIGLDRDPTVQPHAD 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +D+ QF L + FS L D +DG VFD+GVSSMQ+D +RGFSF + GP Sbjct: 62 AVAKDFPGQFQLIRTPFSGLAQAFADSGKAKLDGAVFDIGVSSMQLDQAERGFSFMRDGP 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G +A+D+VN + L I + GEE+Q+ R+A AI++RR F T DL+ Sbjct: 122 LDMRMSDEGETAADIVNSWDHGPLAHIFKLYGEERQSGRVATAILRRRVEQSFTRTLDLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K + + IHPATR FQALRI VN+E+ EL +GL +AE L GG L VV+FHS Sbjct: 182 EVVEKALGGRRGAPIHPATRVFQALRIAVNDELGELERGLEAAEATLAPGGRLAVVTFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F R+G A P + F K + + + N R+RSAK Sbjct: 242 LEDRIVKAFLTERTGNTPAGSRHAPIAVDPRKPSFTLQFKGAREAGEGERSTNPRARSAK 301 Query: 311 LRAGMRTVERSI 322 LRA +RT + Sbjct: 302 LRAAVRTEAPAW 313 >gi|322516106|ref|ZP_08069041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus vestibularis ATCC 49124] gi|322125401|gb|EFX96751.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus vestibularis ATCC 49124] Length = 316 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ++A +VVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+QE++ N RS SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKVALVNRKPILPSQEELEANNRSHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|89067948|ref|ZP_01155392.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516] gi|89046546|gb|EAR52602.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516] Length = 320 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 143/326 (43%), Positives = 197/326 (60%), Gaps = 16/326 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS+A H PVL+E +I P LD TFG GGY+R+ + G+ +VI +DRD Sbjct: 1 MSAA-----APHTPVLIEPIIEACAPVS-GTWLDGTFGFGGYARALLEAGAAHVIGIDRD 54 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + +L + TFS+L + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 55 PLAHELAG--WVADEPRVTLIRGTFSELD--RHGEALDGVVLDLGVSSMQLDRPERGFSF 110 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRMS G SA+D+VN+ + + + IL GEE+ + RIA AIV+ R P T Sbjct: 111 MSDGPLDMRMSQDGPSAADLVNELDERTIADILFNYGEERASRRIARAIVRAR---PLAT 167 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L++L++ + K + HPATR+FQALRI VNNE ELA+GL +AE+AL GGLL V Sbjct: 168 TAELAALVEGCLPRPKPGQSHPATRTFQALRIAVNNEYGELAEGLMAAERALAPGGLLAV 227 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G+ P A P F +T+K + + +VA N R+ Sbjct: 228 VTFHSVEDRMVKRFMQARAGQTGGPSRHAPDVAQAPPAFGLVTRKAIGADEAEVARNPRA 287 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSAKLR RT + D + +P Sbjct: 288 RSAKLRIARRTDAPAAPVDIKSLGMP 313 >gi|288939887|ref|YP_003442127.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180] gi|288895259|gb|ADC61095.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180] Length = 339 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLLE+ ++ L + +D TFG GG+SR+ ++ DRDP AV+ G+ Sbjct: 35 HKPVLLEESVSALLVQSDGIYVDGTFGRGGHSRAILARLGAAGRLLGFDRDPEAVAVGRA 94 Query: 77 TMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ Q +F+ + + D ++G++ DLGVSS Q+D +RGFSF GP Sbjct: 95 -LAAQDPRFSIHQGSFADIGRLLDEAGVDARLNGLLLDLGVSSPQLDTPERGFSFMAEGP 153 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA+ + +A ++ +L GEE+ A+RIA AIV+ R P +TT L Sbjct: 154 LDMRMDPDSGESAAQWLARAEQGEIATVLHEFGEERFANRIARAIVETRTQTPIRTTAQL 213 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V + + HPATR+FQA+RI VN E+E L + L L GG L V+SFH Sbjct: 214 AELVARAVPRREPGK-HPATRTFQAVRIQVNGELEALRRCLDQVCDRLAVGGRLAVISFH 272 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + + K V P+ + A N R+RSA L Sbjct: 273 SLEDRLVKRFIRREAKGPELPKGVPARAVEVQGRLRPVGKSVRPSTAEEALNPRARSAIL 332 Query: 312 RAGMR 316 R R Sbjct: 333 RVAER 337 >gi|312131313|ref|YP_003998653.1| s-adenosyl-methyltransferase mraw [Leadbetterella byssophila DSM 17132] gi|311907859|gb|ADQ18300.1| S-adenosyl-methyltransferase MraW [Leadbetterella byssophila DSM 17132] Length = 301 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 152/302 (50%), Gaps = 9/302 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75 H PV+L + + LN P + +D TFG GG+SR K ++ D+D A Sbjct: 4 SYHKPVMLTECLQGLNIRPDGIYVDVTFGGGGHSREILKHLTTGHLYGFDQDADAQEQAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + VDG++ DLG+SS QID +RGFS + G LDM Sbjct: 64 KISSPNFTFIRANFRNIRKYLKIYGVSKVDGILADLGISSHQIDTPERGFSTRFDGELDM 123 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ +GISA +VVN+ +L +I G+ GE K A +A AI + T QDL Sbjct: 124 RMNTSTGISAKEVVNEYAEDELHKIFGMYGELKNARSVARAI--ALEKGNIHTVQDLKDT 181 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ K N+ + FQALRI VN E++ L + L + L GG L+V+S+HSLE Sbjct: 182 LKHLAPRGKENK--FYAQVFQALRIEVNEELKVLEEFLLQVPEVLAPGGRLVVMSYHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR VK F S + + + P Q++T+K V ++ ++A N R+RSAKLR Sbjct: 240 DRPVKNFIRSGKFYGEVEKDLFGNEIKP--LQAVTRKAVEASEAEIAENPRARSAKLRIA 297 Query: 315 MR 316 + Sbjct: 298 EK 299 >gi|171913327|ref|ZP_02928797.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 131/305 (42%), Positives = 177/305 (58%), Gaps = 9/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H+PVL +V+A L PAPGKVILD T G GG++ + G+ VI LD+D A+S E + Sbjct: 26 YHLPVLPAEVVAALAPAPGKVILDGTLGGGGHTSLLLQAGAEVIGLDQDTDALSHAGERL 85 Query: 79 RDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y QF Q+ F + +DG++ DLGVSS Q+D RGFSF GPL Sbjct: 86 KAYAATGQFRSVQSNFRDFPAVLQALGITALDGLLVDLGVSSYQLDVASRGFSFMHEGPL 145 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G +A+D+VN+ +L RIL GEE+Q+ RI A+V+RR+ PF TT DL+ Sbjct: 146 DMRMNTGGGRTAADLVNEDEPAELERILWEYGEERQSRRIVRALVQRREQRPFTTTSDLA 205 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S I + + + HPAT +FQ LRI VN+E+ LA L +A LK GG L V+SFHS Sbjct: 206 SAIAGVI--PRRGKTHPATLTFQGLRIAVNDELAALADFLHAAPAWLKPGGRLAVISFHS 263 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F S + + P + + +K T E+V N RSRSAKL Sbjct: 264 LEDRMVKQAFQRLSTEWLDRPEWPEPRRNPEHCLRLLHRKPQEATDEEVKRNPRSRSAKL 323 Query: 312 RAGMR 316 R + Sbjct: 324 RTAEK 328 >gi|218258181|ref|ZP_03474583.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii DSM 18315] gi|218225704|gb|EEC98354.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii DSM 18315] Length = 310 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 17/309 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 + HVPV+L + + L P V +D TFG GG+SR + D+D A Sbjct: 4 KEVCYHVPVMLHESLEGLGIQPSGVYVDVTFGGGGHSREILNRLDNEGTLYGFDQDADAE 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 +F ++ F L +++ VDG++ DLGVSS D DRGFSF Sbjct: 64 KN-----IPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G +A+D+VN + L + + GE K A ++A +V+ R+ + Sbjct: 119 RFDGALDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIE 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T D +I+ + K+ + FQALRI VN+E+ L + L+ + LK GG L+ Sbjct: 179 TIADFLEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLV 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDRLVK F + + + A + + P F+ + KV+VP+ E++ N RS Sbjct: 237 VITYHSLEDRLVKNFLKTGNFEGKAEQDFFGNIKSP--FRLVNNKVIVPSGEEIERNPRS 294 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 295 RSAKLRIAE 303 >gi|254441632|ref|ZP_05055125.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307] gi|198251710|gb|EDY76025.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307] Length = 325 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 147/326 (45%), Positives = 194/326 (59%), Gaps = 8/326 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVS 72 H+PVL+ +IA +P LDATFGAGGY++ G+ VI +DRDP Sbjct: 4 TDDTPPHIPVLIGPLIAACSPIS-GTWLDATFGAGGYTQRLLAAGADKVIGVDRDPAVFK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Q +L + TFS L D +DG+V DLGVSSMQID +RGFSF + GP Sbjct: 63 MAQ--WAADNPAITLVEDTFSNLDTIASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGP 118 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN+A+ DL IL I GEE+ + RIA IV++R P TT L+ Sbjct: 119 LDMRMGQEGQSAADIVNEADETDLADILYIYGEERASRRIARKIVEQRDREPITTTLRLA 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+ + SK + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L +V+FHS Sbjct: 179 KLIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKPGGYLAIVTFHS 238 Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 +EDR+VK+F R G A R+ F+ ITKK +++VA N RSRSAKL Sbjct: 239 VEDRMVKRFLQQRGGGMGNANRYSPVLETEKPSFEIITKKAKAADEDEVAQNPRSRSAKL 298 Query: 312 RAGMRTVERSIE-DDSFVHLPRLPTL 336 R RT + D S + +P+L + Sbjct: 299 RVARRTDAPAGALDRSKIGMPQLKAI 324 >gi|221638505|ref|YP_002524767.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides KD131] gi|262825605|sp|B9KNI8|RSMH_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221159286|gb|ACM00266.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Rhodobacter sphaeroides KD131] Length = 331 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 144/329 (43%), Positives = 199/329 (60%), Gaps = 5/329 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 1 MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQ Sbjct: 60 LALEMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 K GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVV 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+F RS G+ R+ + A F ++ + P + ++A N R+R Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRAR 298 Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 SA+LR G+RT + + D + P +P Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327 >gi|259503028|ref|ZP_05745930.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus antri DSM 16041] gi|259168894|gb|EEW53389.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus antri DSM 16041] Length = 317 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 173/317 (54%), Gaps = 11/317 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + +HV VLL++ +A LN P +D T G GG++ + ++ + D+D A Sbjct: 1 MAMAEFNHVTVLLKEAVAGLNIRPTGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETA 60 Query: 71 VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125 + ++ + D + +L + F LQ + VDGV++DLGVSS Q D RGF Sbjct: 61 IDYNRDQLNDAIAAGKLTLVEDNFRHLQQALAAHGVRRVDGVLYDLGVSSPQFDDAQRGF 120 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++ PLDMRM+ +SA +VVN+ + L RIL GEE+ A +IA I +RRQ P Sbjct: 121 SYKLDAPLDMRMNQDQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREP 180 Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG Sbjct: 181 IRTTFELVDVIKEAIPAAARRHGGHPAKKSFQAVRIAVNDELGALEESLEQALAMLTVGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + V++F SLEDRLVK F +S + + F+ I +K ++P+ +++A Sbjct: 241 RISVITFQSLEDRLVKTLFREKSSLSADLPQGLPVIPAGMSPDFKLINRKPILPSAQELA 300 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+ SAKLR + Sbjct: 301 ANHRAHSAKLRIIEKIK 317 >gi|146305949|ref|YP_001186414.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp] gi|262825105|sp|A4XQR6|RSMH_PSEMY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145574150|gb|ABP83682.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp] Length = 314 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 12/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + H+ VLL++ + L +D TFG GG+SR G ++ D+DP Sbjct: 1 MTDSTLRHITVLLDEAVEGLAVRADGCYIDGTFGRGGHSRLILHKLGPGGRLLGFDKDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGF 125 A++ G+ + +F + Q +F++L D V GV+ DLGVSS Q+D +RGF Sbjct: 61 AIATGEA-LAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGVLLDLGVSSPQLDDPERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF GPLDMRM+ G+SA+D + A ++ R+L GEE+ A R+A A+V+RR+ P Sbjct: 120 SFLNDGPLDMRMNPDVGVSAADWIATAEEDEIARVLKDYGEERFAKRMARAVVQRREQQP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL+ ++ + + + +PATR+FQ +RI+VNNE+ +L +GL +A +AL+ GG Sbjct: 180 FTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIYVNNELGDLERGLDAALEALEVGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L+V+SFHSLEDR+VK+F ++ R + + K V ++ Sbjct: 239 LVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLIGKPVYAGDAELKA 298 Query: 303 NRRSRSAKLRAGMR 316 N RSRSA +R + Sbjct: 299 NPRSRSAVMRIAEK 312 >gi|56459539|ref|YP_154820.1| S-adenosyl-methyltransferase MraW [Idiomarina loihiensis L2TR] gi|68565448|sp|Q5R0L7|RSMH_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56178549|gb|AAV81271.1| Predicted S-adenosylmethionine-dependent methyltransferase [Idiomarina loihiensis L2TR] Length = 315 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 124/317 (39%), Positives = 177/317 (55%), Gaps = 13/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + T HV VLLE+ I L P +DATFG GG++R+ VIALD+DP Sbjct: 1 MITTSPQHVSVLLEESIEALATDPQGTYIDATFGRGGHTRALLNQLGDDARVIALDQDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + +F + FS LQ D ++ V G++FDLGVSS Q+D +RGF Sbjct: 61 --AIAAAAAFADDPRFQIIHTPFSNLQQVLDDLQLNRQVTGILFDLGVSSPQLDDAERGF 118 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM+ + G +A++ +N+A D++ +L GEE+ A RIA AIV R+ P Sbjct: 119 SFMRDGPLDMRMNTTSGETAAEWLNRAEKDDISWVLKEYGEERFARRIASAIVMDREKKP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+ L+ +I + V K HPATR+FQA+RI +N E+E++ Q L ++ LK G Sbjct: 179 FTRTKQLAEMIAR-VSPVKEKHKHPATRTFQAIRIHINRELEQIEQALEASLSGLKEDGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAF 302 L+V+SFHSLEDRLVK+F S + + A +++ K K + P + +V Sbjct: 238 LVVISFHSLEDRLVKRFIRKHSEGKQLPPGLPVTEAERNKDKALEKVGKAIKPGKAEVQL 297 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRS+ LR R Sbjct: 298 NPRSRSSVLRIARRVRN 314 >gi|77462648|ref|YP_352152.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1] gi|88909216|sp|Q3J4N3|RSMH_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77387066|gb|ABA78251.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1] Length = 331 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 144/329 (43%), Positives = 199/329 (60%), Gaps = 5/329 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 1 MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQ Sbjct: 60 LALKMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 K GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVV 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+F RS G+ R+ + A F ++ + P + ++A N R+R Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRAR 298 Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 SA+LR G+RT + + D + P +P Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327 >gi|251783120|ref|YP_002997423.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391750|dbj|BAH82209.1| S-adenosyl-methyltransferase mraW [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 337 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 106/327 (32%), Positives = 172/327 (52%), Gaps = 15/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + +DG+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+ + PLDMRM ++A DVVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K ++P+QE++A N R+ SAKLR + Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKI 335 >gi|260172400|ref|ZP_05758812.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D2] Length = 304 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D+VN + + L IL + GE K + ++A IVK R + Sbjct: 118 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEVVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|145600350|ref|YP_001164426.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Pestoides F] gi|263504690|sp|A4TQ91|RSMH_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145212046|gb|ABP41453.1| hypothetical protein YPDSF_3095 [Yersinia pestis Pestoides F] Length = 318 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 21/323 (6%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NNKTVDNNYKHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ ++ +FS+ FS L YV D +DG++ DLGVSS Q+D + Sbjct: 64 DPEAIEAAKQI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI F HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANASPF---RDKHPATRSFQAIRIYINSELEEIERALDGAHEVLAP 237 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDR+VK F S + + A +S+ K ++P Sbjct: 238 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPG 295 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++A N R+RS+ LR R E Sbjct: 296 DAEIAENPRARSSVLRFAERIGE 318 >gi|167764163|ref|ZP_02436290.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC 43183] gi|167698279|gb|EDS14858.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC 43183] Length = 303 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 161/311 (51%), Gaps = 16/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L + Y + VD V+ DLGVSS D +RGFS Sbjct: 61 A-----ERNIVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAVLADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G++A+D+VN + + L I + GE K + ++A IVK R Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARAVQKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 GTIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP +++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDNDEIERNPR 291 Query: 306 SRSAKLRAGMR 316 SRSAKLR + Sbjct: 292 SRSAKLRIAEK 302 >gi|269960233|ref|ZP_06174608.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3] gi|269835040|gb|EEZ89124.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3] Length = 316 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y D VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAAKI---DDPRFTIIHGPFSGMAQYAEDYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R+ + Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + PT++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|261379351|ref|ZP_05983924.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703] gi|284797791|gb|EFC53138.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703] Length = 320 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 168/315 (53%), Gaps = 12/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + + L + +D TFG GG+SR ++ D+DP A++ Sbjct: 5 ENYQHVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGKQGRLVVFDKDPEAIA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++ S+ F Q + + +DG +FDLG+SS QID G RGFSF+ Sbjct: 65 VANE-LAVQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRF 123 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT Sbjct: 124 DAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ L+ + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V+ Sbjct: 184 RKLAQLVAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+F S R + ++ +++ K + P + N R+ Sbjct: 243 AFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTETETNPRA 301 Query: 307 RSAKLRAGMRTVERS 321 RSA LR R+ Sbjct: 302 RSAVLRVAERSSGEF 316 >gi|239947593|ref|ZP_04699346.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of Ixodes scapularis] gi|241068474|ref|XP_002408444.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis] gi|215492432|gb|EEC02073.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis] gi|239921869|gb|EER21893.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of Ixodes scapularis] Length = 307 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCG 74 I HV V+L +++ L+P G+ LD TFGAGGYS++ + I ALDRDP + Sbjct: 1 MIQSHVSVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESYDCYITALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E ++Y E+F + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIKQNYGERFDFIETNFADSFTKLKKKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G++A + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLNAEEFVNTAEEKELADVIYKYGDESFSRRIARRIVEYRKTARIDSTDKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI++N+E+ EL + L + + LK G L+VVSFHSLE Sbjct: 181 VRNSI-GFRKGKIDPATKTFQAIRIYINDELGELERFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A + + IT K + P+ ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVARSKYAKDDMAIDPDKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|119469206|ref|ZP_01612190.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7] gi|119447458|gb|EAW28726.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7] Length = 312 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VL+++ I L P + +D TFG GG+S + A+D+DP A+ Sbjct: 3 AQFEHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGDAGRLQAIDQDPQAIK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ D + F++ FS+L D VDG++ D+GVSS Q+D +RGFSF Sbjct: 63 SAEKFADDSR--FAIAHTRFSKLYDVAEQNDLIGKVDGILLDIGVSSPQLDDAERGFSFM 120 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM + G SA+ + +A + D+T ++ LGEEK RIAH I++ R+ P T Sbjct: 121 KDGPLDMRMDPTSGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILETREHTPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L+SA K LK GG L+V Sbjct: 181 TKQLADLVDEAV-PVKDKFKHPATRTFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F +S R + ++A + K + P+ E+VA N R Sbjct: 240 ISFHSLEDRIVKQFIRKQSKGEALPRGLPLTDAQINQNLTLKAVGKAIKPSTEEVARNPR 299 Query: 306 SRSAKLRAGMR 316 SRS+ LR R Sbjct: 300 SRSSVLRVAQR 310 >gi|75909403|ref|YP_323699.1| S-adenosyl-methyltransferase MraW [Anabaena variabilis ATCC 29413] gi|123608960|sp|Q3M882|RSMH_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|75703128|gb|ABA22804.1| methyltransferase [Anabaena variabilis ATCC 29413] Length = 305 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 176/328 (53%), Gaps = 26/328 (7%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 M+S S K++S + H+PVL ++V+ L G LDAT G GG+SR + Sbjct: 1 MKSHSAKSLS--VEEATFSHLPVLPQEVVTGLAVRSGGHYLDATVGGGGHSRLILEAAPD 58 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 + A+D+D A++ ++ + ++ EQ ++ F+ + P DGV+ DLGVSS + Sbjct: 59 VRLTAVDQDGDALTAAKKELAEFGEQVKFVRSNFAAYE--FPVASFDGVLADLGVSSYHL 116 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF+ LDMRM +SA+DV+N + +L I GEE+ + RIA IV Sbjct: 117 DTPERGFSFRHQANLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIV 176 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++R TT+ ++ + RIHPATR FQALRI VN+E++ L L A K Sbjct: 177 EKRPFH--TTTELAEAIASSVPPKYRYARIHPATRVFQALRIVVNDELKSLETFLEKAPK 234 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL GG + ++SFHSLEDRLVK + + +TKK ++ T+ Sbjct: 235 ALVPGGRIAIISFHSLEDRLVKHGLRNS-----------------PSLKVLTKKPIIATE 277 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDD 325 ++A N RSRSAKLR + E ED+ Sbjct: 278 AEIANNPRSRSAKLRIAEKKAEMGQEDN 305 >gi|312143945|ref|YP_003995391.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus'] gi|311904596|gb|ADQ15037.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus'] Length = 310 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 162/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 +H VLL + I LN V LD T G GG+S K +IA+DRD A+ Sbjct: 1 MSFEHKAVLLNEAIKYLNIKEDGVYLDGTLGRGGHSFEILKKLSEHGKLIAIDRDIEAIK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK 129 +E + L A F + + ++FDLGVSS Q+D +RGFS+QK Sbjct: 61 AVRE-KQPENSSLILEHANFLDFDKVLNKHSISKVDGMLFDLGVSSPQLDNAERGFSYQK 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + +A+D+VN + K+L +I+ GEE A RIA IV+ R+ + T Sbjct: 120 DGPLDMRMNQNQALTAADIVNNYSQKELIKIISDYGEENWAVRIAEFIVEARKKEEIERT 179 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ V ++ HPA R+FQALRI N+E+ +L + ++ + L GG +++ Sbjct: 180 SELVEIIKAAVPKGARRGGGHPARRTFQALRIATNDELNQLQKLIKKSVSFLNKGGRIVI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + + + IT+ + + +V N R+ Sbjct: 240 ISFHSLEDRIVKHSFRELAKDCTCPPDFPICVCDKVSHVKVITRSPIEAKKNEVDSNPRA 299 Query: 307 RSAKLRAGMRT 317 RSAKLRA + Sbjct: 300 RSAKLRAAEKI 310 >gi|224024612|ref|ZP_03642978.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM 18228] gi|224017834|gb|EEF75846.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM 18228] Length = 304 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 171/315 (54%), Gaps = 19/315 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ H+PVLLE+ I +N PG + +D TFG GG+S+ + S + + D Sbjct: 1 MNET---EQTYHIPVLLEESIDGMNIQPGGIYVDMTFGGGGHSKEILRRMDKDSRLFSFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 +D A E E+F+ ++ F L +++ VD ++ DLGVSS D + Sbjct: 58 QDEDA-----ERNIVNDERFTFVRSNFRYLHNFLRYYGVEKVDAILADLGVSSHHFDDSE 112 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ G LDMRM+ GI+A+D+VN + L + + GE K + ++A +VK R Sbjct: 113 RGFSFRFDGNLDMRMNKRAGITAADIVNTYEEERLADLFYLYGELKNSRKLAATLVKARS 172 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 S T D +++ + + + FQALRI VN E+E L + L +A +ALK Sbjct: 173 SKKIVTIGDFLDIVKP--LYGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKP 230 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+++HSLEDR+VK + + + +V+ + P F+ + KV+VPT+E++ Sbjct: 231 GGRLSVITYHSLEDRIVKNVMKTGNAEGKSVQDFYGNVQSP--FRLVNNKVIVPTEEEII 288 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 289 RNPRSRSAKLRIAEK 303 >gi|301169870|emb|CBW29474.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae 10810] gi|309973403|gb|ADO96604.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2846] Length = 321 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA +T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|330859314|emb|CBX69661.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia enterocolitica W22703] Length = 320 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 175/323 (54%), Gaps = 19/323 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ I H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NNHIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ + +FS+ FS L YV + ++GV+ DLGVSS Q+D + Sbjct: 64 DPQAIEAAKSI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM GISA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDR+VK F S + + A +S+ K ++P Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPP 297 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 +VA N R+RS+ LR R E Sbjct: 298 DAEVAENPRARSSVLRFAERIKE 320 >gi|293370481|ref|ZP_06617034.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f] gi|299147137|ref|ZP_07040204.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23] gi|292634473|gb|EFF53009.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f] gi|298515022|gb|EFI38904.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23] Length = 304 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDTHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D+VN + + L IL + GE K + ++A IVK R + Sbjct: 118 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|322412440|gb|EFY03348.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 105/327 (32%), Positives = 175/327 (53%), Gaps = 15/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLG 112 ++ D+D A+ Q ++ Y K Q + + F L+ + + +DG+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRHLKARLEALGVTEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS++++ PLDMRM ++A DVVN DL +I GE+K + + Sbjct: 129 VSSPQLDEKERGFSYKQNAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + +F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEVSTVDVPKGLPFIPEDMKPIFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K ++P+QE++A N R+ SAKLR + Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKI 335 >gi|257063602|ref|YP_003143274.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM 20476] gi|256791255|gb|ACV21925.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM 20476] Length = 318 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + L+ +D+T G G+S S +I +D+D A+ ++ Sbjct: 7 HTPVLLAECLEHLHLQTQHTFVDSTLGGAGHSYEAAKLLGPDSLLIGIDQDQMALDAARK 66 Query: 77 TMR----DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + D + L + F L D + + V ++FDLGVSS QID RGFSF++ Sbjct: 67 RLETLGEDAAPKLKLLRGNFGNLDDLLVEACVPGIDAILFDLGVSSPQIDFVSRGFSFKE 126 Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM + ++++N N ++LTRI+ +E+ ASRIA IV R++AP +T Sbjct: 127 DAPLDMRMDPGNQTINAAELINTLNEQELTRIIYENSDERWASRIASFIVAARETAPIET 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L +I+ + S + HPA R+FQALRI VN+E+ L GL +A + L GG + Sbjct: 187 SGQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNSELTVLKSGLEAAIRWLNPGGRVA 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK FA S + V + IT+K ++PT+E++A N R Sbjct: 247 VISYHSLEDRIVKNMFAEHSRTCTCPPELPVCVCGAKPVLKVITRKPILPTEEEIANNPR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAEK 317 >gi|126461541|ref|YP_001042655.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17029] gi|262825567|sp|A3PHR7|RSMH_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126103205|gb|ABN75883.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17029] Length = 331 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 144/329 (43%), Positives = 200/329 (60%), Gaps = 5/329 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 1 MAEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDP 59 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQ Sbjct: 60 LALKMASGWAGDYGDRLRLVAGTFSQLDSHAGA-PLDGVVLDLGVSSMQLDLAERGFSFQ 118 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 K GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 119 KDGPLDMRMSQEGESAADLVNTASEESLADILYHYGEERASRRIARAIVEARAAAPITRT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV Sbjct: 179 LALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVV 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+F RS G+ R+ + A+ F ++ + P + ++A N R+R Sbjct: 239 TFHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAYAPRFTLPLRRAISPDEAELAENPRAR 298 Query: 308 SAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 SA+LR G+RT + + D + P +P Sbjct: 299 SARLRVGVRTDAPAGKVDPQALGTPLIPK 327 >gi|209696060|ref|YP_002263990.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238] gi|263446678|sp|B6ELI3|RSMH_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|208010013|emb|CAQ80336.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238] Length = 316 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 162/317 (51%), Gaps = 18/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 HV VLL + I L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFQHVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSRLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +F++ FS L+ YV + +DGV+ DLGVSS Q+D DRGFSF Sbjct: 62 AEAKTI---TDPRFNIIHGPFSGLKGYVEELGLVGQIDGVLLDLGVSSPQLDDADRGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSA 183 K GPLDMRM + G+ S + A+V+D+T ++ GE+K A RIA IV R ++ Sbjct: 119 MKDGPLDMRMDPTSGMPVSQWLLTADVEDITWVIREFGEDKHAWRIAKGIVAYRDNEENE 178 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T L+ LI + + HPATR+FQA RI++N+E++E+ L A GG Sbjct: 179 PLTRTGQLAKLISDVAPKNFKEKKHPATRTFQAFRIYINSELDEIDTALNGALDVFAEGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299 L V+SFHSLEDR+VK F S + + K + PT + Sbjct: 239 RLSVISFHSLEDRMVKHFIRKESRGPQVPHGIPLTENQIKALGSAKMKPIGKAIKPTVNE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 V N RSRS+ LR R Sbjct: 299 VDVNVRSRSSVLRIAER 315 >gi|145637120|ref|ZP_01792783.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH] gi|145269774|gb|EDK09714.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH] Length = 321 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA +T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKYKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|282882847|ref|ZP_06291452.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B] gi|281297258|gb|EFA89749.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B] Length = 320 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 117/319 (36%), Positives = 173/319 (54%), Gaps = 8/319 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 HV VL +V+ LN K+ +DAT G G+S+ +I +D+D A+ Sbjct: 1 MEFKHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIK 60 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QE + +Y+ F+ F ++ D + K VDG++ DLGVSS Q D G+RGFS++ Sbjct: 61 KSQEVLSEYENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S +A +VN+ + +L RI+ GEE A RI+ IV+ R+ TT Sbjct: 121 SELDMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTF 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL +I+K V + + HPA R+FQALRI VN+E+ L + + + L GG L ++ Sbjct: 181 DLVEVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAII 240 Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK F S V +I + + IT+K +VPT+E++ N RS Sbjct: 241 SFHSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSH 300 Query: 308 SAKLRAGMRTVERSIEDDS 326 SAKLR + E+++ Sbjct: 301 SAKLRVAEKLEVSHDEENN 319 >gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 328 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 141/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%) Query: 9 MSS---AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIAL 64 M+S H+PVLL +V+ L P G V++D TFGAGGYS + V + Sbjct: 1 MTSPAQTPDSDSRPHIPVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGI 60 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCG 121 DRDP A++ GQ + + S+ + + + +P VDG+ D+GVSSMQID Sbjct: 61 DRDPSAIAAGQRLPQAADGRLSVIEGRYGDMDLLLPQAGIARVDGIALDIGVSSMQIDQA 120 Query: 122 DRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 +RGFSF K GPLDMRM SG SA+DVVN A+ +L I+ LGEEK A R+A AIV R Sbjct: 121 ERGFSFAKDGPLDMRMEQSGPSAADVVNTASEAELADIIYHLGEEKYARRVARAIVAARL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T L+++I+ V S + I P+TR+FQALRI VN+E+ EL +GL +AE+ L Sbjct: 181 DTPFTRTLQLANVIRGAVRKS-GDGIDPSTRTFQALRIHVNDELGELERGLEAAERLLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQED 299 GG L VV+FHSLEDR+VK F RSG + A +P+ F I++K + P+ + Sbjct: 240 GGRLAVVTFHSLEDRVVKTFLKKRSGDMPAPSRHLPAQAAGPAPTFSLISRKAIAPSDAE 299 Query: 300 VAFNRRSRSAKLRAGMRTVERSI 322 N R+RSAKLRA +RT Sbjct: 300 CRANPRARSAKLRAALRTDAAPW 322 >gi|332522739|ref|ZP_08398991.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str. Jelinkova 176] gi|332314003|gb|EGJ26988.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str. Jelinkova 176] Length = 316 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HITVLLHETVDMLRVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDSIDGILYDLGVSSPQLDERERGFSYRQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A VVN + DL RI GE++ + +IA I + R P +TT + Sbjct: 127 PLDMRMDSDASLTAYHVVNDYSFNDLVRIFFRYGEDRFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + L+ A L G + V++ Sbjct: 187 LAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDLLAVEGHISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + F+ +++K ++P++E++A N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASVVDVPKGIPFIPEEMQPKFELVSRKPILPSKEELAENNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|258508273|ref|YP_003171024.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG] gi|257148200|emb|CAR87173.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG] gi|259649590|dbj|BAI41752.1| methyltransferase [Lactobacillus rhamnosus GG] Length = 313 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D + VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S R + A +Q + +K ++P+ ++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAH 301 Query: 308 SAKLRAGMRTVE 319 SAKLR + Sbjct: 302 SAKLRVIEKIRN 313 >gi|330721283|gb|EGG99370.1| rRNA small subunit methyltransferase H [gamma proteobacterium IMCC2047] Length = 312 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 10/311 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL + + L PG +D TFG GG+SR+ ++ +D+DP A+ Sbjct: 2 SDFNAHDSVLLNEAVDALVVDPGGCYVDGTFGRGGHSRAILSRLSSKGRLLVIDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E D E+ + A+F++L+D + GV GV+ DLGVSS Q+D +RGFSF Sbjct: 62 AYAHEHFGD-DERVIIGHASFAELKDLAAAHGLENGVTGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + +A ++++ +L GEE+ A R+A AIV R PF Sbjct: 121 TQDGPLDMRMDTSRGQSAAEWIAEAPEEEISTVLKEYGEERFARRMAKAIVAERAQRPFT 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ +I++ + + +PATR+FQ +RIF+N E+++LA L A L G L+ Sbjct: 181 RTAHLAEVIKQANPAWEKGK-NPATRAFQGIRIFINRELDDLALVLDQAVDLLADKGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VKKF + RH+ K V +++++ N R+ Sbjct: 240 VISFHSLEDRIVKKFIHKQEKGEPLPRHLPIMQDQIDQRLKRVGKAVKASEQELKDNVRA 299 Query: 307 RSAKLRAGMRT 317 RSA +R RT Sbjct: 300 RSAIMRIAERT 310 >gi|302877570|ref|YP_003846134.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans ES-2] gi|302580359|gb|ADL54370.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans ES-2] Length = 311 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 169/312 (54%), Gaps = 12/312 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 + H VLL + + L P + LD TFG GG+S + +IALD+D AV Sbjct: 2 SEVLVHTTVLLAEAVEALAIKPDGIYLDCTFGRGGHSALILQQLGANGRLIALDKDMTAV 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 S G + +F + + F+ L + + + + VDG++ DLGVSS Q+D RGFSF+ Sbjct: 62 SHG---LEWQDARFKMVHSGFTHLAEVLRELGVERVDGILLDLGVSSPQLDEAARGFSFR 118 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM G +A+ + A+ LT ++ GEE+ A +IA AI+ R+ P QT Sbjct: 119 FDAPLDMRMDNSRGPTAAQWLETADEGLLTEVIRDYGEERFAKQIARAIIVAREIQPIQT 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L L+ KTV ++ +PATR+FQA+RI++N E+EEL Q L LK GG L V Sbjct: 179 TGQLVELVGKTV-RTRETGKNPATRTFQAIRIYLNQELEELKQVLPQCVTHLKPGGRLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + R++ + + + + + ++++ N R+ Sbjct: 238 ISFHSLEDRMVKHFIRDMNDADKLPRNVPIRASEVPKGKLNLIGRAIKAGKDELNSNPRA 297 Query: 307 RSAKLRAGMRTV 318 RSA +R R+ Sbjct: 298 RSAVMRVAERSD 309 >gi|228472692|ref|ZP_04057452.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC 33624] gi|228276105|gb|EEK14861.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC 33624] Length = 305 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 17/310 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H+PVLL++ I L+ P +D TFG GG+SR+ + + A D+DP A Sbjct: 2 QENSYHIPVLLQECIEGLSIDPAGTYVDVTFGGGGHSRAILERLSPQGRLFAFDQDPQAQ 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ++F+L F ++ ++ V GV+ D GVSS Q D +RGFS + Sbjct: 62 ANAIA-----DDRFTLIGQNFRHIKRFLRFYGVKEVSGVLGDFGVSSHQFDTAERGFSIR 116 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 G LDMRM+ SA +VVN + ++L+ I GE Q+ ++A AIV+RR++AP T Sbjct: 117 MEGELDMRMNPEQPLSAKEVVNGYSQEELSEIFFRYGELSQSRKLAQAIVQRRETAPIAT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL ++QK YF KN + +QA+RI VN E+ L + L +K G + + Sbjct: 177 TADLKEVVQK--YFPKNQENKHLAQLYQAIRIEVNQELSALEELLLQLPDIVKPMGRIAL 234 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDRL+K+F + + P F+ + K ++PT E++A N R+R Sbjct: 235 ISYHSLEDRLIKRFIRDGQFSGEPEKDFYGNIQVP--FRKV-GKPILPTAEEIARNNRAR 291 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 292 SAKLRVAERV 301 >gi|303327356|ref|ZP_07357797.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3] gi|302862296|gb|EFL85229.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3] Length = 328 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 116/326 (35%), Positives = 167/326 (51%), Gaps = 10/326 (3%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIA 63 + M HVPVL + + L P G LD T G GG++ + GS + Sbjct: 2 AQVMQDTEERASTRHVPVLPAETLEALAPRAGGRYLDGTLGMGGHAAAVLSAAPGSELCG 61 Query: 64 LDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 LDRD A+ + + + F + F++ + VDG + D+GVSS+Q+D Sbjct: 62 LDRDEQALDLARARLAPFGGRAHFFHCRYSRFAEALKELQWDKVDGALLDIGVSSLQLDE 121 Query: 121 GDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM SA VN+ + L + LGEE QA RIA IV+ Sbjct: 122 NERGFSFYGDGPLDMRMDQHSGELSAWHWVNRESFARLKECIATLGEEPQAGRIARVIVE 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 RQ AP +T +L++L++K + + HPATR+FQALR+ VN+E+ EL + L Sbjct: 182 ARQKAPIDSTAELAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVP 295 L GG L V++FHSLEDR+VK+ + RH + H + + KK + Sbjct: 242 AWLPVGGRLAVITFHSLEDRMVKQAMRHWAEGCRCPRHVPVCVCRHQPEVRILHKKPLQA 301 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 E++A N R+ SAKLRA + E + Sbjct: 302 GSEELAVNPRAGSAKLRAVEKIAEAA 327 >gi|156973213|ref|YP_001444120.1| S-adenosyl-methyltransferase MraW [Vibrio harveyi ATCC BAA-1116] gi|263504515|sp|A7MWK7|RSMH_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156524807|gb|ABU69893.1| hypothetical protein VIBHAR_00894 [Vibrio harveyi ATCC BAA-1116] Length = 316 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 114/316 (36%), Positives = 166/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAAKI---DDPRFTIIHGPFSGMAKYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ- 186 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R+ + Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + PT++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|260881846|ref|ZP_05405354.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] gi|260847818|gb|EEX67825.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] Length = 330 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 163/319 (51%), Gaps = 9/319 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H+ V+LE+ + L + +D T G G+S +I +D+D A+ +E Sbjct: 10 HISVMLEETVKGLVTNKEGIYVDCTLGGAGHSHRIAELLSPKGRIIGIDQDEEAIEAAKE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D K + + + FS L++ VDGVVFDLGVSS QID +RGFS+ PL Sbjct: 70 RLKDVKCRVDIVHSNFSHLEEILEAQGAPLVDGVVFDLGVSSHQIDTAERGFSYMHDAPL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN + K+L RI GEE+ RIA IVK R P + T +L Sbjct: 130 DMRMDPEAKFSAYDVVNTYSEKELDRIFHDYGEERWGRRIAQFIVKERMKKPIERTGELV 189 Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I K V + HPA R FQA+RI VN+E+ L + R+A LK GG + +++F Sbjct: 190 DIICKAVPKAVRQAANGHPAKRIFQAIRIEVNDELGILEKAFRTAVHHLKPGGRIAIITF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+ K+ + + + H + K T +++A N RS+SAK Sbjct: 250 HSLEDRIAKQTLKEMARGCICPPELPVCVCHHKPEIRLLGKPKQATADELAHNSRSKSAK 309 Query: 311 LRAGMRTVERSIEDDSFVH 329 LR + + ++++ Sbjct: 310 LRIAEKLATDNNQEETRKG 328 >gi|146299563|ref|YP_001194154.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101] gi|189082215|sp|A5FIX6|RSMH_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146153981|gb|ABQ04835.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101] Length = 302 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 166/312 (53%), Gaps = 17/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + T+ H PVLL + L+ P + +D TFG GG+S+ + + A D+D Sbjct: 1 MTTTMEYHNPVLLHPTVDGLDIKPDGIYVDVTFGGGGHSKEILRRLGPNGKLFAFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ E+F+L F ++ + K VDG++ DLGVSS Q D +RGFS Sbjct: 61 ALANA-----LPDERFTLINENFRFIKRFLRFHGIKAVDGILADLGVSSHQFDVPERGFS 115 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + LDMRMS +A VVN+ +DL R+ GE K A +A IV+ R P Sbjct: 116 TRFDAELDMRMSQKNDLNAYRVVNEYEEQDLRRVFFDYGELKNAPVLARTIVEARHHRPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT +L +++K + N+I + +QA+RI VN E++ L + + + + LK GG Sbjct: 176 KTTDELKEVLKKYLPEKVRNKI--LAQIYQAIRIEVNQEMDVLKEFIEQSLEILKPGGRF 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+F + + R + + P F++I K++VP E++ N R Sbjct: 234 SVISYHSLEDRLVKRFIKNGMFEGEPERDFYGNFSVP--FKTI-GKLIVPDDEEIKINNR 290 Query: 306 SRSAKLRAGMRT 317 +RSAKLR + Sbjct: 291 ARSAKLRIAEKI 302 >gi|309379057|emb|CBX22359.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 319 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 119/317 (37%), Positives = 167/317 (52%), Gaps = 11/317 (3%) Query: 13 IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 + T H+ VLL + + L V +D TFG GG+SR ++ D+DP Sbjct: 1 MSETENYRHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDP 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 AV+ +E + ++ S+ F+ Q + D VDG +FDLGVSS QID RGF Sbjct: 61 RAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGF 119 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L + V ++ PATR+FQA+RIF+N E+EE+ L LK GG Sbjct: 180 IDTTRKLAQLAAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303 L V++FHSLEDR+VK+F S R A P I K + P +VA N Sbjct: 239 LAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAAN 298 Query: 304 RRSRSAKLRAGMRTVER 320 R+RSA LR RT Sbjct: 299 PRARSAVLRVAERTAGP 315 >gi|149190159|ref|ZP_01868435.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1] gi|148836048|gb|EDL53009.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1] Length = 316 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 115/317 (36%), Positives = 162/317 (51%), Gaps = 18/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H+ VLL + I L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SESFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 EEAGKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---A 183 K GPLDMRM + G+ S+ + QA + D+T ++ GE+K A RIA AIV R+ Sbjct: 119 MKDGPLDMRMDPTSGMPVSEWLAQAELDDITWVIREFGEDKHARRIAKAIVAHREDEEKE 178 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G Sbjct: 179 PLTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + K + P+ ++ Sbjct: 239 RLSVISFHSLEDRMVKRFMRKESRGPQVPHGIPMTEDQIRALGSANLKTIGKALKPSDQE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 V N RSRS+ LR + Sbjct: 299 VEMNTRSRSSVLRVAEK 315 >gi|145635580|ref|ZP_01791278.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA] gi|229844915|ref|ZP_04465053.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1] gi|145267142|gb|EDK07148.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA] gi|229812296|gb|EEP47987.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1] Length = 320 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 170/323 (52%), Gaps = 17/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDR 66 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+DR Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSNGRLIAVDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A++ + +F + +FS + + +DG++ DLGVSS Q+D + Sbjct: 61 DPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEAE 117 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV + Sbjct: 118 RGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNK 177 Query: 182 SAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 SA T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 SAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSAL 237 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVV 294 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 DMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAIQ 297 Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 PSDAEIQANPRSRSAILRVAERI 320 >gi|123441024|ref|YP_001005013.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. enterocolitica 8081] gi|263504660|sp|A1JJI5|RSMH_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122087985|emb|CAL10773.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 320 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 19/323 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NNKTVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ + +FS+ FS L YV + ++GV+ DLGVSS Q+D + Sbjct: 64 DPQAIEAAKSI---TDPRFSIVHGPFSDLAHYVRELNLVGRINGVLLDLGVSSPQLDDPE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM GISA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDR+VK F S + + A +S+ K ++P Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPP 297 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 +VA N R+RS+ LR R E Sbjct: 298 DAEVAENPRARSSVLRFAERIKE 320 >gi|22299615|ref|NP_682862.1| putative methyltransferase [Thermosynechococcus elongatus BP-1] gi|30173039|sp|Q8DH87|RSMH_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|22295799|dbj|BAC09624.1| tlr2072 [Thermosynechococcus elongatus BP-1] Length = 290 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 168/306 (54%), Gaps = 25/306 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVL V+ L P G + LDAT G GG++ + V+A+D+DP A++ Sbjct: 7 STYHQPVLAPAVLEALQPKAGGLYLDATVGGGGHTALLLRREPTCRVLAIDQDPMALAAA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 QE + + ++ + F+ L V + DG++ DLGVSS Q+D +RGFSF+ PLD Sbjct: 67 QEFLAPFGDRVQFWHGNFADLP--VAEPMFDGILADLGVSSAQLDRPERGFSFRFDAPLD 124 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + +A+ V+N + ++L I GEE+ A RIA IV RR P TQ+L+ Sbjct: 125 MRMNPANPLTAATVINHYSEQELADIFYEYGEERFARRIARQIVARR---PLNRTQELAQ 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 L+ + S RIHPATR FQALRI+VN E+ L Q L + LK G + V+SFHSL Sbjct: 182 LVAHCLKASPRQRIHPATRVFQALRIYVNQELAVLDQFLARSPHWLKPTGRIAVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK+ + + + + +T+K +V +V+ N RSRSAKLR Sbjct: 242 EDRRVKQAWRAN-----------------PLLEVVTRKPIVADAVEVSLNPRSRSAKLRI 284 Query: 314 GMRTVE 319 +RT Sbjct: 285 AVRTSA 290 >gi|313667806|ref|YP_004048090.1| s-adenosyl-l-methionine-dependent methyltransferase MraW [Neisseria lactamica ST-640] gi|313005268|emb|CBN86701.1| s-adenosyl-l-methionine-dependent methyltransferase MraW (ec 2.1.1.-) [Neisseria lactamica 020-06] Length = 319 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 119/317 (37%), Positives = 167/317 (52%), Gaps = 11/317 (3%) Query: 13 IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 + T H+ VLL + + L V +D TFG GG+SR ++ D+DP Sbjct: 1 MSETENYRHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDP 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 AV+ +E + ++ S+ F+ Q + D VDG +FDLGVSS QID RGF Sbjct: 61 RAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGF 119 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L + V ++ PATR+FQA+RIF+N E+EE+ L LK GG Sbjct: 180 IDTTRKLAQLAAQNV-RTRECGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303 L V++FHSLEDR+VK+F S R A P I K + P +VA N Sbjct: 239 LAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAAN 298 Query: 304 RRSRSAKLRAGMRTVER 320 R+RSA LR RT Sbjct: 299 PRARSAVLRVAERTAGP 315 >gi|315920696|ref|ZP_07916936.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694571|gb|EFS31406.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 309 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 8 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 68 -----ERNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D+VN + + L IL + GE K + ++A IVK R + Sbjct: 123 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 182 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 183 TIGEFLEVVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 298 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 299 RSAKLRIAEK 308 >gi|323699047|ref|ZP_08110959.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. ND132] gi|323458979|gb|EGB14844.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans ND132] Length = 326 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 166/318 (52%), Gaps = 10/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M S H VLL +V+ L P PG +D T G GG+S + + G+ ++ LD Sbjct: 1 MKSGEVSPASLHTTVLLHEVVRWLQPRPGGRYMDGTLGMGGHSLALLEAAGEGAELVGLD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 RD A++ + + + LF FS+ ++ + + + +DG V DLGVSS+Q+D D Sbjct: 61 RDQEALALATRRLEPFAGRVHLFHLPFSRFEEALDEVGWERIDGAVLDLGVSSLQLDEAD 120 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF GPLDMRM G SA ++VN +L RI+ + GE+ A +IA AIV+ R+ Sbjct: 121 RGFSFIHDGPLDMRMDPDSGPSAEELVNTLKHGELARIIRVYGEDPLAGKIASAIVRERE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 T L+ +++ + R HPATR+FQ LRI VN E EEL L + L Sbjct: 181 KGAITRTLQLAEIVRLAYPPKMRHTARNHPATRTFQGLRIAVNRETEELEHYLATIVGRL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298 K G L ++SFHSLEDR VK F + H + + + +T+K V + Sbjct: 241 KPGARLAIISFHSLEDRAVKHAFRDAAKGCKCPPHQLHCTCGGVPEMKVLTRKPVAASDA 300 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RSAKLR R Sbjct: 301 ERDANPRARSAKLRVAER 318 >gi|68249679|ref|YP_248791.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 86-028NP] gi|148826257|ref|YP_001291010.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE] gi|229846161|ref|ZP_04466273.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1] gi|81335891|sp|Q4QLG6|RSMH_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456014|sp|A5UCX6|RSMH_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68057878|gb|AAX88131.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Haemophilus influenzae 86-028NP] gi|148716417|gb|ABQ98627.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE] gi|229811165|gb|EEP46882.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1] Length = 321 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA +T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|312888802|ref|ZP_07748365.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM 18603] gi|311298677|gb|EFQ75783.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM 18603] Length = 300 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 161/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PV+L + I LN P +D TFG GG+SR K +IA D+D A + Sbjct: 1 MSNYHNPVMLAECIEGLNINPEGTYVDVTFGGGGHSREILKHLGPQGKLIAFDQDVDAQA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + E+F F L+++ VDG++ DLGVSS Q D +RGFS + Sbjct: 61 NAID-----DERFVFVDQNFRYLKNFCRLHGAIPVDGILADLGVSSHQFDKAERGFSTRF 115 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM S +A D+VN DL RI G+ GE + A +A IV R ++P T Sbjct: 116 DADLDMRMDQSATQTAKDIVNTYAEADLHRIFGMYGEIQNAKTLARTIVTARLNSPINTI 175 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL I + K N+ + FQALRI VN E+E L + L+ + L GG L+V+ Sbjct: 176 ADLKGAIATLIPRGKENK--YLAQVFQALRIEVNQELEALQEFLKQTVEVLAPGGRLVVM 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK F A + + ++ P F+++++K + T++++ N R+RS Sbjct: 234 SYHSLEDRLVKSFIAKGKFSGELEKDIYGNDDRP--FEAVSRKAITATEDEIKLNNRARS 291 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 292 AKLRIAVK 299 >gi|145639350|ref|ZP_01794956.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII] gi|145271653|gb|EDK11564.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII] gi|309751224|gb|ADO81208.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2866] Length = 321 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 170/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + ++G++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|126663227|ref|ZP_01734225.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38] gi|126624885|gb|EAZ95575.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38] Length = 298 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 17/308 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVLL++ + LN P V +D TFG GG+SR + A D+D A+ Sbjct: 1 MEYHNPVLLKETVDGLNIRPDGVYVDVTFGGGGHSREIMSRLGENGKLFAFDQDLDALKN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Y E+F+L F ++ + K VDG++ DLGVSS Q D +RGFS + Sbjct: 61 A-----IYDERFTLINENFRFIKRFLRFHGIKQVDGILADLGVSSHQFDVAERGFSTRFD 115 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ G SA VVN+ + ++++R+L GE K A +A+ IV R+ + + Sbjct: 116 AELDMRMNQKGDISAYHVVNEYDEQEISRVLFNYGELKNARAMANVIVTARKDKEIRNSD 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ K + K N+I + +QA+RI VN E+E L + L + + LK GG L V+S Sbjct: 176 QLKQVLAKFLPGHKANKI--LAQIYQAIRIEVNQEMEVLKEFLEQSLEILKPGGRLSVIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+F + + R + P F++I K++VP++E++A N R+RSA Sbjct: 234 YHSLEDRLVKRFVKNGMFEGEPERDFFGNFEVP--FKTIE-KLIVPSEEEIAINNRARSA 290 Query: 310 KLRAGMRT 317 KLR + Sbjct: 291 KLRVAEKI 298 >gi|319776629|ref|YP_004139117.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3047] gi|329124142|ref|ZP_08252689.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus aegyptius ATCC 11116] gi|317451220|emb|CBY87453.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3047] gi|327467567|gb|EGF13065.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus aegyptius ATCC 11116] Length = 321 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|81428357|ref|YP_395357.1| PutativeS-adenosylmethionine-dependent-methyltran sferase [Lactobacillus sakei subsp. sakei 23K] gi|88909201|sp|Q38XN3|RSMH_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78609999|emb|CAI55047.1| PutativeS-adenosylmethionine-dependent-methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 173/314 (55%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL++ + LN P + +DAT G GG+S ++ + D+D A+ Sbjct: 3 ETFKHQSVLLKETVDALNVQPDGIYVDATLGGGGHSEYLLSQLTTGHLYSFDQDDHALES 62 Query: 74 GQETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + Y + Q + ++ F L+ + ++ +DG+++DLGVSS Q D RGFS++ Sbjct: 63 SRQRLAKYADAGQVTFIKSNFRFLKIALAEQGITKIDGILYDLGVSSPQFDDAQRGFSYK 122 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K PLDMRM + ++A VVN+ + + L +I GEEK + ++A I ++R+ AP +T Sbjct: 123 KEAPLDMRMDQGAELTAYTVVNEWSYQQLIKIFFRYGEEKFSKQVARKIEQQREIAPIET 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ LI++ + ++ HPA R FQA+RI VN+E+ + + A +K GG + Sbjct: 183 TIQLADLIKEAIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEDSVEQAIPLVKVGGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRR 305 +++F SLEDRLVK F ++ + + V + + +K ++PT++++ N R Sbjct: 243 IITFQSLEDRLVKTMFKEQATLPDIPKGLPIMPGTEKTVLKLVNRKPILPTEDELTVNHR 302 Query: 306 SRSAKLRAGMRTVE 319 + SAKLR + E Sbjct: 303 AHSAKLRVAEKQKE 316 >gi|33151483|ref|NP_872836.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP] gi|42559455|sp|Q7VP62|RSMH_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33147703|gb|AAP95225.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP] Length = 313 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 172/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 ++ T H+ VLL + + L P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MNETDHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSRLATNGRLIAIDRDPC 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + + +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---SDARFQIIHTAFSAIPEVCESLGLMGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA++ + Q +++DL +L GEE+ A RIA A+V ++ Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSIEDLAWVLKTFGEERFAKRIAQAVVSYNKTNS 177 Query: 185 FQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + T+ L K+ HPATRSFQA+RIF+N E++EL + L +A + L G Sbjct: 178 EKITRTLQLAKIIADAVPFKDKHKHPATRSFQAIRIFINRELDELEKALTNALRVLAPEG 237 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVA 301 L ++SFHSLEDR+VK+F S + + + + + + +I K ++P++ ++ Sbjct: 238 RLSIISFHSLEDRMVKQFMKKNSKGEVVPKGLPILEAELNKNIPLNIIGKAIMPSEAEIV 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 298 ANARSRSAVLRIAAK 312 >gi|288800555|ref|ZP_06406013.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299 str. F0039] gi|288332768|gb|EFC71248.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299 str. F0039] Length = 312 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 164/314 (52%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + I LN PG + +D T G GG+S K +++ + D+D Sbjct: 2 VKTAETYHIPVLLNESIDGLNIQPGGIYVDVTMGGGGHSHEILKRLDVNAHLYSFDQDAD 61 Query: 70 AVSCGQETMRDY---KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A + ++ D E+F+ ++ F L++++ +DG++ DLGVSS D R Sbjct: 62 AEANLKQNHGDDLLKDERFTFVRSNFRYLKNWMRYHGVEQIDGLLADLGVSSHHFDDESR 121 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ PLDMRM+ +A+D+VN + L I + GE K + +IA +VK RQ Sbjct: 122 GFSFRFESPLDMRMNKRSSRTAADIVNNYAEEALADIFYLYGELKNSRKIASLLVKARQE 181 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT D ++++ F + + FQALRI VN E+ L + L S LK G Sbjct: 182 KRIETTGDFIAVVEP--LFKREREKKDLAKLFQALRIEVNGEMSALKELLMSVVDMLKPG 239 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+++HSLEDR+VK + + + + P F+ I KV+VPT E+ Sbjct: 240 GRLSVITYHSLEDRIVKNIMKAGNIEGKIEQDFFGCINTP--FKLINNKVIVPTDEEQEQ 297 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 298 NPRSRSAKLRIAEK 311 >gi|17230846|ref|NP_487394.1| S-adenosyl-methyltransferase MraW [Nostoc sp. PCC 7120] gi|20138995|sp|Q8YRT9|RSMH_ANASP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17132449|dbj|BAB75053.1| all3354 [Nostoc sp. PCC 7120] Length = 302 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 169/317 (53%), Gaps = 24/317 (7%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 I I H+PVL ++VI L PG LD T G GG+SR + + A+D+D Sbjct: 7 TIEEPIFSHLPVLPQEVITGLVVRPGGRYLDVTVGGGGHSRLILEAAPDVKLTAVDQDGD 66 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++ + ++ EQ ++ F+ P DGV+ DLGVSS +D +RGFSF+ Sbjct: 67 ALTAAKQELAEFGEQVKFVRSNFAAYD--FPSTSFDGVLADLGVSSYHLDTPERGFSFRH 124 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +SA+DV+N + +L I GEE+ + RIA IV++R TT Sbjct: 125 QASLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIVEKRPFH--TTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ + RIHPATR FQALRI VN+E++ L + A KAL GG + ++ Sbjct: 183 ELAEAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFIEKAPKALVPGGRIAII 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK + + + +TKK ++ T +++A N RSRS Sbjct: 243 SFHSLEDRLVKHGLRNS-----------------PLLKVLTKKPIIATDDEIANNPRSRS 285 Query: 309 AKLRAGMRTVERSIEDD 325 AKLR + E ED+ Sbjct: 286 AKLRIAEKQAETGDEDN 302 >gi|319897403|ref|YP_004135600.1| s-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3031] gi|317432909|emb|CBY81275.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3031] Length = 321 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSFNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA +T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|329954177|ref|ZP_08295272.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056] gi|328528154|gb|EGF55134.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056] Length = 305 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 161/312 (51%), Gaps = 16/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREIVSRLGEGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A F+ ++ F L +++ VD V+ DLGVSS D +RGFS Sbjct: 61 AEQN-----IVNDPHFTFVRSNFRYLHNFLRYHGIGQVDAVLADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G++A+D+VN + + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARATRKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 GTIGEFLDIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV++P +++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIIPDDDEIERNPR 291 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 292 SRSAKLRIAEKI 303 >gi|254460590|ref|ZP_05074006.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2083] gi|206677179|gb|EDZ41666.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium HTCC2083] Length = 327 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 135/325 (41%), Positives = 191/325 (58%), Gaps = 6/325 (1%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFA 70 H+PVLL ++ +P G LD TFGAGGY+R+ G++ VIA+DRDP A Sbjct: 2 TQAAISAPHIPVLLGPILKAADPISGG-WLDGTFGAGGYTRALLDAGADSVIAVDRDPLA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q Y + + FS + ++ D +DGVV DLGVSSMQ+D +RGFSF + Sbjct: 61 FEMAQPWADQYGARLIQQRGVFSDMAEFAQD--LDGVVLDLGVSSMQLDRAERGFSFMRD 118 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN + +++ IL GEE+ + RIA AIV+ R P TT Sbjct: 119 GPLDMRMGQEGQSAADIVNDYDAEEIAEILYNYGEERASRRIARAIVELRAETPITTTLQ 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+K + K + HPATRSFQALRI VN+E EL +GL +AE+AL GGLL +V+F Sbjct: 179 LAGLIEKCLPRKKPGQSHPATRSFQALRIAVNDEYGELYRGLMAAERALAPGGLLAIVTF 238 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HS+EDR+ K+F SR+G + F+ +++K + ++ ++ N R+RSA Sbjct: 239 HSVEDRMAKRFLQSRAGTTGNANRFAPQLDVEKPAFELLSRKAITASEFELENNVRARSA 298 Query: 310 KLRAGMRTVERSIE-DDSFVHLPRL 333 KLR RT + + + +P L Sbjct: 299 KLRLARRTDAHAGDIAPKTLGMPML 323 >gi|254426992|ref|ZP_05040699.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881] gi|196193161|gb|EDX88120.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881] Length = 312 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 167/313 (53%), Gaps = 8/313 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 +T +H PV+LE+V+ + +D TFG GG+SR+ + +DRDP Sbjct: 2 TTENTQYEHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLARLDDNGRLAGIDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ GQE + +F + F L V + +DG++ DLGVSS Q+D RGFS Sbjct: 62 QAIAAGQE-LAASDSRFHMVANRFDCLPQVVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM G S ++ ++ A KD+ +L GEE+++ IA I R+ P Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSHAAEKDIANVLYRYGEERKSRWIAKRICDTRKEQPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L++LI+ + ++ + HPATRSFQALRI +N E++ L Q L + + L GG L Sbjct: 181 TRTLQLANLIESVLGRNEQGK-HPATRSFQALRIHINGELDALNQVLEQSLETLAIGGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR+VK F SG+ R +P K + ++ ++ N R Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGNEMPQRLEPVGKAMRASKAELKVNVR 299 Query: 306 SRSAKLRAGMRTV 318 SRSA LR + Sbjct: 300 SRSAVLRVAEKVA 312 >gi|78356081|ref|YP_387530.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|88909199|sp|Q313R1|RSMH_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78218486|gb|ABB37835.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 325 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 170/314 (54%), Gaps = 11/314 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAV 71 H HVPVLL++V+ L+P G LD T G GG+S + G + ++ LDRD A+ Sbjct: 12 HQYTAHVPVLLDEVLHYLSPVRGGRYLDGTLGLGGHSEAIMNRCGGDAWLLGLDRDREAL 71 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + ++ + A +SQ + + G+DG + D+GVSSMQID RGFSF Sbjct: 72 AAASGRLAPFGDRVTTRYACYSQFAAIMDEIGWTGLDGALIDIGVSSMQIDTPSRGFSFY 131 Query: 129 KSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM SG SA +VN +V+ L I+ GE+ A RIA AIV R P + Sbjct: 132 ADGPLDMRMDPSGDMPSAGVLVNTGSVERLKEIISTYGEDPMAGRIARAIVDARARNPIE 191 Query: 187 TTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +++ + HPATR+FQALR+ VN E+EEL L + + GG Sbjct: 192 TTARLAEVVESAYPAKWRAKSRNHPATRTFQALRMAVNGELEELETFLAAIVDRMNPGGR 251 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V++FHSLEDRLVK F + + RH+ +T+K V Q ++ N Sbjct: 252 IVVITFHSLEDRLVKNAFRDEAKGCLCPRHIPVCVCGKKPRVNVLTRKPVTAGQAELQAN 311 Query: 304 RRSRSAKLRAGMRT 317 R+ SAKLRA R Sbjct: 312 SRASSAKLRAAERI 325 >gi|281421043|ref|ZP_06252042.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205] gi|281404961|gb|EFB35641.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205] Length = 304 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 16/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 I HVPVLL++ + LN PG + +D TFG GG+SR G+++ + D+D Sbjct: 2 IKTAETYHVPVLLKESVDGLNIQPGGIYVDVTFGGGGHSREILSRLTEGAHLYSFDQDAD 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A E E F+ + F L++++ GV DG++ DLGVSS D RGFS Sbjct: 62 A-----ERNVVANENFTFVCSNFRFLKNWMRYYGVDGLDGLLADLGVSSHHFDDETRGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM+ G +A+D+VN+ + L I + GE K + RIA A+VK R P Sbjct: 117 FRFDSPLDMRMNKRAGKTAADIVNEYDEGALADIFYLYGELKNSRRIASALVKARAEKPI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+D + ++ F + + FQALRI VN+E++ L + LRSA LK GG L Sbjct: 177 LTTKDFMAAVEP--LFKREREKKDMAKLFQALRIEVNHEMDALKEMLRSATALLKPGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+++HSLEDR+VK + + + + P F+ + KV+VP ++ N R Sbjct: 235 SVITYHSLEDRIVKNMMKAGNAEGKIEQDFFGRIETP--FKLVNNKVIVPDADEQERNPR 292 Query: 306 SRSAKLRAGMR 316 SRSAKLR + Sbjct: 293 SRSAKLRIAEK 303 >gi|288818267|ref|YP_003432615.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6] gi|288787667|dbj|BAI69414.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6] gi|308751864|gb|ADO45347.1| S-adenosyl-methyltransferase MraW [Hydrogenobacter thermophilus TK-6] Length = 287 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 130/305 (42%), Positives = 180/305 (59%), Gaps = 24/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVLL++ + LL G V +DAT G GG+++ + VI +DRDP A+ +E Sbjct: 1 MHIPVLLKESVDLLVWRTGGVYVDATVGLGGHTKGILERDPRAFVIGIDRDPHALKLAEE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D++ +F L+QA F L + + K VDG +FDLGVS +Q+ RGFSFQ+ PL Sbjct: 61 NLKDFEGRFCLYQANFRYLDEVLKQEGIKEVDGFLFDLGVSMLQLKS-PRGFSFQRDEPL 119 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A V+N + +DL RIL GEE ASRIA AIV R P +TT +L Sbjct: 120 DMRMNPEDKKTAYQVINTYSERDLVRILKEYGEEPNASRIARAIVMHRTKKPIETTGELV 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I + + R+HPATR FQA+RI VN E+ L + L + LK GG L+V+SFHS Sbjct: 180 SIITSLI-PYRRGRVHPATRIFQAIRIEVNEELISLEEALEKTPRFLKKGGRLVVISFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK FF + +F+ +TKK + PT +++ N SRSAKLR Sbjct: 239 LEDRIVKNFFKRHTD----------------IFKLLTKKPIRPTLQEMKKNPASRSAKLR 282 Query: 313 AGMRT 317 AG R Sbjct: 283 AGERI 287 >gi|300722051|ref|YP_003711331.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila ATCC 19061] gi|297628548|emb|CBJ89120.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila ATCC 19061] Length = 314 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 177/320 (55%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR ++A+DRDP Sbjct: 1 MANSHFKHTSVLLDEAVNGLNIQEDGIYIDGTFGRGGHSRLILSKLGPNGRLMAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ + E+FS+ FS+L YV D ++GV+ DLGVSS Q+D +RGF Sbjct: 61 AIEASKAI---TDERFSITHGPFSELATYVEDADLVGKINGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G SAS+ + +A +D+ +L GEE+ A RIA AIV R Q P Sbjct: 118 SFMRDGPLDMRMDPTRGQSASEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVARSQEQP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T++L+ LI + K HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 178 MTRTRELAELIAQA-SPIKEKHKHPATRSFQAIRIYINSELEEIERALDGALRVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + A + I K + P+ ++ Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSQGPQVPAGLPLTEAQLKAMGGRSLKFIGK--MKPSGDE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR + E Sbjct: 295 VATNPRARSSVLRFAEKADE 314 >gi|29348864|ref|NP_812367.1| S-adenosyl-methyltransferase MraW [Bacteroides thetaiotaomicron VPI-5482] gi|253568789|ref|ZP_04846199.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6] gi|298387947|ref|ZP_06997496.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14] gi|42558980|sp|Q8A251|RSMH_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29340770|gb|AAO78561.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron VPI-5482] gi|251840808|gb|EES68889.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6] gi|298259354|gb|EFI02229.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14] Length = 304 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 163/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 3 KDELTYHVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFTFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D+VN + L I + GE K + ++A AIVK R + Sbjct: 118 RFDGALDMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIR 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLAAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|303240801|ref|ZP_07327314.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2] gi|302591689|gb|EFL61424.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2] Length = 313 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H PVL E+ I L+ P V +D T G G+S + + +I LD+D FA+ + Sbjct: 4 EHKPVLFEECIENLDIKPDGVYVDGTLGGAGHSSAIYQKLGEKGMLIGLDQDGFALETSK 63 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 + + D + F ++ + + ++ DLGVSS Q+D +RGFS+ K Sbjct: 64 KRLEDQNGKGSLIFANTNFVNIKSVCFENKIACVDGILLDLGVSSHQLDEAERGFSYNKD 123 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +VN+ + +++ +I+ GEE ASRIA IV+RR +TT Sbjct: 124 APLDMRMDRRQKFTAETIVNEYSKEEIKKIIREFGEENWASRIAEFIVQRRDEKRIETTG 183 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + S + HPA R+FQALRI VN+E+ L++ + LK GG ++ Sbjct: 184 ELVEIIKAAIPSSARREGPHPAKRTFQALRIAVNDELGILSKAIEEGVNLLKPGGRFCII 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + +S+ +K +VP+ +++ N R+R Sbjct: 244 TFHSLEDRIVKNEFNKYINPCTCPSTFPVCVCGKKKLAESVHRKPIVPSVKELEENPRAR 303 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 304 SAKLRVLEK 312 >gi|160883877|ref|ZP_02064880.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483] gi|156110607|gb|EDO12352.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483] Length = 309 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 8 KDELTYHVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 68 -----ERNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSF 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D+VN + + L IL + GE K + ++A IVK R + Sbjct: 123 RFDGALDMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIR 182 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 183 TIGEFLEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRS 298 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 299 RSAKLRIAEK 308 >gi|108757260|ref|YP_633751.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622] gi|122980788|sp|Q1D0S2|RSMH_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108461140|gb|ABF86325.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622] Length = 304 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 167/306 (54%), Gaps = 6/306 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 + + H VLL + + LL PA G+VI+D T G GG+S + G+ V+ +DRDP A++ Sbjct: 1 MTASDFQHQTVLLREAVDLLRPADGRVIIDGTLGGGGHSEALLASGATVVGVDRDPVALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F F++L D VDGV+ DLGVSS Q+D +RGFSF K G Sbjct: 61 AATARLGA-NPRFQGRAGNFAELPRVAADLLPVDGVLVDLGVSSPQLDVAERGFSFSKDG 119 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM G +A++++ + ++L RIL GEE A IA + K P +T + Sbjct: 120 PLDMRMGPDGPTAAELIATTDERELVRILKDYGEEPFARPIARELKKAL---PTRTLEAA 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + NRIH ATR+FQALR+ VN E+E L L + LK GG V++FH Sbjct: 177 EVVKRAVPRKAWPNRIHVATRTFQALRMAVNGELEALDALLAAIPGLLKVGGRAAVIAFH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + +G+ + + F +TKK V ++ +V N RSRSA Sbjct: 237 SLEDRKVKEAFRALAGRCTCPPGLPVCVCSGVGDFALVTKKAVAASEAEVEANPRSRSAH 296 Query: 311 LRAGMR 316 LR + Sbjct: 297 LRVVEK 302 >gi|46580916|ref|YP_011724.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. Hildenborough] gi|120601783|ref|YP_966183.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4] gi|50402222|sp|P62470|RSMH_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446337|sp|A1VBE0|RSMH_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46450336|gb|AAS96984.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. Hildenborough] gi|120562012|gb|ABM27756.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4] gi|311234607|gb|ADP87461.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris RCH1] Length = 323 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 173/327 (52%), Gaps = 14/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--- 57 M + M++ H+PVLLE+V+ L P G LD T G G++ + + Sbjct: 1 MSEHP-ENMTA---PEWAAHIPVLLEEVLEYLAPRKGGRYLDGTLGLAGHASAVLERAGE 56 Query: 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVS 114 G+ + LDRDP A+ + + Q L+ +S+ ++ + D VDG + D+GVS Sbjct: 57 GTELCGLDRDPEALRRATARLAPFAGQTHLYHLRYSEFEEALDDLGWPTVDGALIDIGVS 116 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQID +RGFSF GPLDMRM SA +VN+ + L I+ GEE A RIA Sbjct: 117 SMQIDLAERGFSFHADGPLDMRMDPDAHESAWRLVNRERHEVLRDIIARYGEEPMAGRIA 176 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQG 231 AIV R + TT L++++++ R HPATR+FQALR+ VN+E+ EL + Sbjct: 177 RAIVDARNTGSIDTTLQLAAIVERAYPAKWRATARNHPATRTFQALRMAVNDELGELERF 236 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITK 290 L + L GG L+V+SFHSLEDR+VK + RH+ H + +TK Sbjct: 237 LDAILARLAPGGRLVVISFHSLEDRIVKHRMRHWAEGCRCPRHVPRCVCGHSPEVRILTK 296 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + V T ++A N R+ SAKLRA + Sbjct: 297 RPVTATDGELARNPRASSAKLRAAEKV 323 >gi|329117643|ref|ZP_08246360.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD 2020] gi|326908048|gb|EGE54962.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD 2020] Length = 316 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +LN P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HITVLLNETVDMLNVKPDGIYVDATLGGAGHSAYLLSQLNENGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLKPFIDKGQVTFIKDNFRNLKSRLASLGVTEIDGILYDLGVSSPQLDERERGFSYRQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A VVN DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMDTEAELTAYQVVNHYAFNDLVRIFFRYGEDKFSKQIARKIEQAREIKPIETTAE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESIQQAMDILALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + I F+ +++K ++P+ E++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKNIPIIPEHLQPKFELVSRKPILPSLEELEANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKI 314 >gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium DG1235] gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium DG1235] Length = 305 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 5/306 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 + HVPVL + + L P+ G + LD TFG GG++ + V+ALD+DP AV+ Sbjct: 1 MEGHVPVLAAETLEHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAA 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E Y ++ + F L + DG++FD GVSS Q+D DRGFSF+ PLDM Sbjct: 61 ELKERYGDRLRFHRMNFETLDQLE-EGPFDGILFDFGVSSFQLDEVDRGFSFRGEAPLDM 119 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM G+SA+ + A+ DL R + EEK +I +AI+ R+ TT L+ L Sbjct: 120 RMDPESGVSAAQWLATADQADLLRAIRGYAEEKNWRKIVNAILAAREKNELSTTTQLADL 179 Query: 195 IQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I N+++HPAT+ FQ +RI +N+EI + +GL +A LK GG+L +SFHS Sbjct: 180 ILSCTPARVRFNSKLHPATKVFQGIRIAINDEIGVIERGLPAAFDKLKTGGILCAISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+ K + +G+ R P + + + K+ + + ++VA N RSRSAKLR Sbjct: 240 LEDRVAKVLYRRWAGRPEGSRDNRPQDMRVTRAELLGKRPITASDKEVAVNPRSRSAKLR 299 Query: 313 AGMRTV 318 + Sbjct: 300 VLKKIK 305 >gi|301063241|ref|ZP_07203790.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2] gi|300442669|gb|EFK06885.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2] Length = 341 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 10/326 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-- 59 + +T I + HVPVLL++ + LN P + +D T G+GG+S Sbjct: 16 KPGPSRTADLKIQTSNYPHVPVLLQEAVRYLNLKPEGIYVDGTVGSGGHSMEILSHLPEN 75 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115 +++ LD+DP A+ ++ +R + A F+ L + D +DG++ DLG+SS Sbjct: 76 SSLVCLDQDPDAIRLSRKRLRS-DNRVQFIHANFADLGRVMQDLAINRIDGILLDLGMSS 134 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISA-SDVVNQANVKDLTRILGILGEEKQASRIAH 174 QI+ RGFSF + PLDMRM+ D++N +++ L +L GEE++ +A Sbjct: 135 YQIEKSGRGFSFSREEPLDMRMNPDHKPTGMDLINSLSLESLQALLREYGEEQKFKTLAR 194 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AIV+ R+ +T L+ +I++ + + HPAT++FQA+RI +N E+E L L+ Sbjct: 195 AIVRARERETIKTASQLAHIIEEATPKSHRPWKRHPATKTFQAVRIAINKEMESLETFLQ 254 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKV 292 + GG L+V+S+HSLEDR +K+ + +F+ + K+ Sbjct: 255 EIPSLMAVGGRLVVISYHSLEDRQIKRAMVQWEKTCTCPPDFPVCACQKTRIFKRVFKRG 314 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTV 318 + P + ++ FN R+RSA +R R Sbjct: 315 LKPDEREIHFNPRARSAIMRVAERIS 340 >gi|238791165|ref|ZP_04634804.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia intermedia ATCC 29909] gi|238729298|gb|EEQ20813.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia intermedia ATCC 29909] Length = 320 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 173/321 (53%), Gaps = 15/321 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ I H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NNKIVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ + +FS+ FS+L YV + +DGV+ DLGVSS Q+D + Sbjct: 64 DPQAIEAAKSI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQE 298 G L V+SFHSLEDR+VK F S + + A + ++P Sbjct: 240 AGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDA 299 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +VA N R+RS+ LR R E Sbjct: 300 EVAENPRARSSVLRFAERIKE 320 >gi|322834428|ref|YP_004214455.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602] gi|321169629|gb|ADW75328.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602] Length = 313 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 19/317 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A+ Sbjct: 3 ENYKHTSVLLDEAVNGLNIRQDGIYIDGTFGRGGHSRLILSQLGPDGRLLAIDRDPQAIK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L DYV D+ +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAESI---DDPRFSIVHGPFSDLADYVRDRGLEGKIDGVLLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + +A +D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGYSATEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRELPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L G L V Sbjct: 180 TKELADLIANA-SPVREKHKHPATRSFQAIRIYINSELEEIERALDGALEILAPEGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + A A +S+ K ++P++ +VA Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGAQVPAGIPMTEAQIAELGGRSLKSVGK--MMPSEAEVAE 296 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR RT Sbjct: 297 NPRARSSVLRFAERTTA 313 >gi|262066020|ref|ZP_06025632.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC 33693] gi|291380270|gb|EFE87788.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC 33693] Length = 314 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y ++ + + F + VDG++ D+GVSS Q+D +RGFS++ Sbjct: 68 KRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVK 127 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA DVVN + ++L+RI+ GEE+ A +IA I + R++ P TT +L Sbjct: 128 LDMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKTKPITTTFEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 VALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ IT+K ++P ++++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICICGGVKKFEVITRKPIIPVEDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|260642625|ref|ZP_05416656.2| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM 17565] gi|260621294|gb|EEX44165.1| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM 17565] Length = 309 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 160/310 (51%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + HVPVLL++ + +N P +D TFG G+SR G ++ D+D A Sbjct: 8 KDELTYHVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA 67 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 E F ++ F L + Y + VD ++ DLGVSS D +RGFSF Sbjct: 68 -----ERNIVDDPHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSF 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ G++A+D+VN + L I + GE K + ++A IVK R + Sbjct: 123 RFDGDLDMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASVIVKARNGQAIR 182 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 183 TIGEFLEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + P F+ + KV+VP + ++ N RS Sbjct: 241 VITYHSLEDRMVKNIMKTGNVEGKAESDFFGNLNTP--FRLVNNKVIVPDETEIERNPRS 298 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 299 RSAKLRIAEK 308 >gi|261881137|ref|ZP_06007564.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella bergensis DSM 17361] gi|270332142|gb|EFA42928.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella bergensis DSM 17361] Length = 337 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 18/308 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC-- 73 HVPVLL++ + L+ P +D TFG GG+SR ++ + D+D A Sbjct: 37 YHVPVLLKESVDGLDIKPDGTYVDVTFGGGGHSREILSRLHQDGHLYSFDQDADAEQNLS 96 Query: 74 -GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129 ET+ + F+ ++ F L++++ GV+ + + DLGVSS D RGFSF+ Sbjct: 97 GSGETL----DNFTFVRSNFRYLKNWMRYYGVEHIDGLLADLGVSSHHFDDEARGFSFRF 152 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ G +A+DVVN + L I + GE K + RIA +VK R TT Sbjct: 153 DAPLDMRMNKRGGQTAADVVNNYEEEQLADIFYLYGELKSSRRIASVLVKERNQGKILTT 212 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 QD + +Q + + + FQALRI VN E+ L + L +A L GG L V+ Sbjct: 213 QDFVNAVQPLFRRGREKK--DMAKLFQALRIEVNQEMAALREMLTAATDLLAPGGRLSVI 270 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + + P F+ + KV+VP+ E++A N RSRS Sbjct: 271 TYHSLEDRMVKNMMKTGNAEGKLRQDFFGRVECP--FRLVNNKVIVPSDEELARNPRSRS 328 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 329 AKLRIAEK 336 >gi|16273056|ref|NP_439288.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae Rd KW20] gi|145630229|ref|ZP_01786011.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021] gi|260580214|ref|ZP_05848044.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW] gi|260581821|ref|ZP_05849617.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127] gi|1175483|sp|P45057|RSMH_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144984510|gb|EDJ91933.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021] gi|260093498|gb|EEW77431.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW] gi|260095014|gb|EEW78906.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127] Length = 321 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|116513827|ref|YP_812733.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093142|gb|ABJ58295.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 305 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE-----TM 78 + I L P G +DATFG GG++R + N+I D+D +A+ Q Sbjct: 2 HETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSNFAAFLK 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ LDM Sbjct: 62 EDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLDM 121 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM A +VNQ + K L +L G+EK + +IA IV+RR+ P +TT +L + Sbjct: 122 RMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETTFELVEI 181 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I++ + + + HPA +SFQA+R+ VN+E++ L L A L GG + V++F SL Sbjct: 182 IKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISVITFQSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 ED++VK+ F S + + + + +K + ++E++A N RS SAKLR Sbjct: 242 EDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAENNRSHSAKLRV 301 Query: 314 GMR 316 + Sbjct: 302 AEK 304 >gi|191638270|ref|YP_001987436.1| S-adenosyl-methyltransferase MraW [Lactobacillus casei BL23] gi|239631645|ref|ZP_04674676.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066319|ref|YP_003788342.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei str. Zhang] gi|263456244|sp|B3WDX7|RSMH_LACCB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190712572|emb|CAQ66578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus casei BL23] gi|239526110|gb|EEQ65111.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438726|gb|ADK18492.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei str. Zhang] gi|327382302|gb|AEA53778.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus casei LC2W] gi|327385497|gb|AEA56971.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus casei BD-II] Length = 313 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 157/312 (50%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L P + +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKPAGIYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Q +L F L D + VDG+++DLGVSS Q D RGFS++ Sbjct: 62 VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ DL RI GEE + +IA I + R P TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S R + A ++ + +K ++P++E++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPNYRLVNRKPILPSEEELAVNHRAH 301 Query: 308 SAKLRAGMRTVE 319 SAKLR + + Sbjct: 302 SAKLRVIEKIHD 313 >gi|332712413|ref|ZP_08432340.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L] gi|332348887|gb|EGJ28500.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L] Length = 304 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 20/306 (6%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 + T HV VL +++I L PG LDAT G GG++ + V A+DRD A+ Sbjct: 9 NTTPFFHVSVLSQELIEGLAICPGGHYLDATVGGGGHTELILAAAPDVEVTAIDRDANAI 68 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + Y + + +Q F++ Q D+ DG++ DLGVSS Q+D +RGFSF+ + Sbjct: 69 AAAKTRLASYNGRVNFWQGNFAEYQ--PNDRVFDGIIADLGVSSAQLDLPERGFSFRHAA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A D++N L + GEE+ + R+A IV+ + TT+ Sbjct: 127 QLDMRMDQSQSLTAKDIINNWGEVRLADVFYKYGEERLSRRMARRIVE--KRPFQTTTEL 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + RIHPATR FQALRI VN E+E L L A LK GG L ++SF Sbjct: 185 ANAIASCVPPKYRYGRIHPATRVFQALRIVVNQELESLESFLDIAPHWLKPGGRLGIISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F S + + +TKK V E++ N R+RSAK Sbjct: 245 HSLEDRIVKHKFRELSTNCS-------------LLRVLTKKPTVAQAEEIQHNPRARSAK 291 Query: 311 LRAGMR 316 LR R Sbjct: 292 LRFAER 297 >gi|320527513|ref|ZP_08028693.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204] gi|320132070|gb|EFW24620.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204] Length = 311 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 158/309 (51%), Gaps = 9/309 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ + LN + +D T G GG+S ++ A D+D A++ E Sbjct: 3 HTSVLLKETVDSLNVKEDGIYVDGTLGRGGHSGYLISKLKSGHLYAFDKDSQAIAESTEN 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D ++ F +++ + V+G++ DLGVSS Q D RGFS++ LD Sbjct: 63 LKDVLPYITMIHNDFRSMKEELAKRGIYEVNGIMMDLGVSSPQFDDPTRGFSYRYDARLD 122 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ A VVN + ++L RIL GEEK IA AI K+R P +TT L Sbjct: 123 MRMNQEQELDAYQVVNTYSFEELCRILREYGEEKFTKSIARAIEKQRAIQPIETTFQLVD 182 Query: 194 LIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HPA ++FQALRI VN+E+ L +GL A LK G +++FHS Sbjct: 183 VIKSALPDKVLRQKGHPAKQTFQALRIEVNDELGALQKGLEEALSILKPNGRCAIITFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F S + S+ A + ITKK + T E++ N RS SAK Sbjct: 243 LEDRMVKNVFKEYSSAPYIDPRIPIKASDIKQADYNLITKKPITATDEELDENHRSHSAK 302 Query: 311 LRAGMRTVE 319 LR + E Sbjct: 303 LRVIEKKGE 311 >gi|256846968|ref|ZP_05552414.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN] gi|256715632|gb|EEU30607.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN] Length = 313 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 167/309 (54%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL + +A LN P +DAT G GG+S G ++ A D+D A+ QE Sbjct: 5 HVTVLLHEAVAGLNVQPDGQYVDATLGGGGHSGLILSKLHGGHLYAFDQDRTAIEYNQEH 64 Query: 78 MRDY--KEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + DY + Q + + F LQ + + VDG+V+DLGVSS Q D G RGFS+Q Sbjct: 65 LADYLARHQLTFIKDNFKNLQVDLNKLGVTKVDGIVYDLGVSSPQFDDGQRGFSYQHDAK 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA ++VNQ L +IL GEEK A IA AI + R+ P TT +L Sbjct: 125 LDMRMNQEQSLSAYEIVNQWPYDRLVKILYRYGEEKFAKSIARAIERHREERPITTTFEL 184 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA ++FQA+RI VN+E+ L L A + L GG + V++F Sbjct: 185 VDVIKEAIPARARRHGGHPAKKTFQAIRIAVNDELGVLEASLEQAFEMLNVGGRISVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F R+ + F+ + +K + P+ +++A N R+ SA Sbjct: 245 QSLEDRLVKTMFRERTTLKDVPAGLPVIPKEQQPDFKLVNRKAIEPSPQELASNHRAHSA 304 Query: 310 KLRAGMRTV 318 LR + Sbjct: 305 HLRVIEKVK 313 >gi|332638186|ref|ZP_08417049.1| 16S rRNA m(4)C1402 methyltranserfase [Weissella cibaria KACC 11862] Length = 314 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 172/311 (55%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T +HV VLL + I LN P V +DAT G GG+S+ + + D+D A++ Sbjct: 2 TEFNHVTVLLNEAIDNLNVKPDGVYVDATLGGGGHSQLLASRLTTGKLWSFDQDITAINY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + + + Q F L+ + + +DG+V+DLGVSS Q D G RGFS+ Sbjct: 62 NTEHLAAELAAGKVAFIQNNFRNLKAALAEVGVTEIDGIVYDLGVSSPQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM S +A VVN+ + DL RIL GEEK A +IA AI ++R P +T Sbjct: 122 YDAPLDMRMDQSQELNARTVVNEWDFHDLLRILSRYGEEKFAKQIARAIERQRAIKPIET 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + ++ HPA RSFQA+RI VN+E+ + + L A LK GG + Sbjct: 182 TFELVEVIKSAIPAAARRTGGHPAKRSFQAIRIAVNDELGVVEESLAQALDMLKVGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDRLVK F ++ I + F+ +++K ++P++E++A N R Sbjct: 242 VITFHSLEDRLVKTMFKEKTALPEVPAGLPIIPDEMQPDFKLVSRKPILPSEEEMAENHR 301 Query: 306 SRSAKLRAGMR 316 + SAKLR R Sbjct: 302 AHSAKLRVIER 312 >gi|237738955|ref|ZP_04569436.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31] gi|229423555|gb|EEO38602.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31] Length = 320 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ + Sbjct: 14 YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSK 73 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y ++ + + F + VDG++ D+GVSS Q+D +RGFS++ Sbjct: 74 KRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVK 133 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA DVVN + ++L+RI+ GEE+ A +IA I + R+ P TT +L Sbjct: 134 LDMRMNTDQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFEL 193 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 194 VALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFH 251 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ IT+K ++P ++++ N R+ S+K Sbjct: 252 SLEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIPVEDELKNNNRAHSSK 311 Query: 311 LRAGMRT 317 LR R Sbjct: 312 LRILERI 318 >gi|282878018|ref|ZP_06286826.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310] gi|281299853|gb|EFA92214.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310] Length = 312 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 109/314 (34%), Positives = 160/314 (50%), Gaps = 13/314 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 +I HVPVLL++ + LN P + +D TFG GG+S + ++ + D+D Sbjct: 2 SIKTAETYHVPVLLQESVEGLNIQPDGIYVDVTFGGGGHSMQILRQLGENGHLFSFDQDL 61 Query: 69 FAVSC----GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A G E ++ F + Y + +DG++ DLGVSS D R Sbjct: 62 DAEKNIPQAGNELLQQDNFTFVRSNFRYLKNWMRYYEIEQIDGLLADLGVSSHHFDDESR 121 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ PLDMRM+ + I+A+DVVN + + L + + GE K A RIA +VK R Sbjct: 122 GFSFRFDAPLDMRMNKTASITAADVVNTYSEERLADVFYLYGELKNARRIASLLVKARTE 181 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TTQD + F + + FQALRI VN+E+E L + L A++ L+ G Sbjct: 182 EMIVTTQDF--IQATAPLFKREREKKDMAKLFQALRIEVNHEMESLKEMLEGAKQLLRPG 239 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+++HSLEDR+VK + + + + P F I KKV+VP +++ Sbjct: 240 GRLSVITYHSLEDRIVKNMMKTGNVEGKMTQDFFGKITTP--FSLINKKVIVPAEDEQQR 297 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 298 NPRSRSAKLRIAEK 311 >gi|77919804|ref|YP_357619.1| S-adenosylmethionine-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] gi|88909207|sp|Q3A2F8|RSMH_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77545887|gb|ABA89449.1| predicted S-adenosylmethionine-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 314 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 123/313 (39%), Positives = 175/313 (55%), Gaps = 9/313 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + H V+ E+V+ L P PG+V +D T G GG++R + ++ LDRD Sbjct: 1 MTREVFQHSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDRE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + E+ L F+ + + VDG++ DLGVSS Q+D RGFS Sbjct: 61 ALEEAGRQLASFGERVLLRHGNFADATRILAELDIATVDGILLDLGVSSFQLDTARRGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 FQ PLDMRM S G++A+DVVN + ++L RI GEE+ A RIA I K R P Sbjct: 121 FQSDAPLDMRMDTSAGMTAADVVNALSPEELARIFREYGEERYARRIARRIEKVRADEPL 180 Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L++ V +RIHPATR FQALRI VN E++ L +GLR + LK GG Sbjct: 181 MTTRQLAELVRDAVPGGHVPSRIHPATRVFQALRIHVNAELDSLREGLRRSLALLKPGGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+SFHSLEDR+VK+FF S + I + +T+K + ++ ++A N Sbjct: 241 MAVISFHSLEDRIVKQFFRSEVQTCICPPGLPICACNRKPGVALLTRKGLKASESEIAAN 300 Query: 304 RRSRSAKLRAGMR 316 R+RSA LRA R Sbjct: 301 PRARSAVLRAIRR 313 >gi|153874645|ref|ZP_02002785.1| Bacterial methyltransferase [Beggiatoa sp. PS] gi|152068890|gb|EDN67214.1| Bacterial methyltransferase [Beggiatoa sp. PS] Length = 339 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 24/332 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 S++ + +H PVLL + + L + +D TFG GG++++ V+A D+ Sbjct: 3 SNSKSLSQNEHQPVLLAEALKALTIYDDSIYIDCTFGRGGHTKAILNDLGPSGQVLAFDQ 62 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGD 122 DP AV + + +F++ + F+QLQ V + V+GV+ DLGVSS Q++ Sbjct: 63 DPEAVQIAKA-LCLTDNRFNIIYSPFTQLQQQVEKRGWLGQVNGVLLDLGVSSPQLNTPT 121 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF GPLDMRM+ + G S + +NQA+ ++ +L GEE+ A IA AIV R Sbjct: 122 RGFSFMHDGPLDMRMNPNSGTSIGEWLNQADTDEIALVLKTYGEERHARHIAKAIVMARS 181 Query: 182 SAPFQTTQDLSSLIQKT---------------VYFSKNNRIHPATRSFQALRIFVNNEIE 226 A +TT L+ +I + ++ HPAT++FQALRIF+N+E+E Sbjct: 182 KAELKTTCQLAEIISAVSIPYPKKMAHSSSSLKWGTQKKFKHPATQTFQALRIFINHELE 241 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 +L Q L A L GG L+V+SFHSLEDR+VK+F M + + Sbjct: 242 QLQQVLPQALDVLAPGGRLVVISFHSLEDRIVKRFIRDCVRGDDFPPTMPITADQLSPSL 301 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K + PT + N R+RSA +R + Sbjct: 302 LAIGKPIKPTLAETQANPRARSAIMRVAEKIK 333 >gi|159027563|emb|CAO86934.1| MraW [Microcystis aeruginosa PCC 7806] Length = 293 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 25/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LD T G GG+SR + V A+DRD A+ + + Sbjct: 7 HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKIS 66 Query: 78 MRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y + +L+ F+ + + DG++ DLGVSS Q D +RGFSF+ + LDMR Sbjct: 67 LAPYLDSRLTLWWGNFADYK--GQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMR 124 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M C ++A+D++N K+L + GEE+ + IA +IV+ + TT+ + + Sbjct: 125 MDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQ--KRPFTTTTELAAVIA 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + RIHPATR FQ+LRI VN E++ L + L A + LK+GG++ ++SFHSLED Sbjct: 183 SSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPQWLKSGGIIAMISFHSLED 242 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RL+K F + ITKK ++P++E+ A N RSRSAKLR Sbjct: 243 RLIKYGFRE-----------------DNSLKIITKKPIIPSREEQAKNPRSRSAKLRIAQ 285 Query: 316 RTV 318 + Sbjct: 286 KIE 288 >gi|254281944|ref|ZP_04956912.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B] gi|219678147|gb|EED34496.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B] Length = 306 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 173/304 (56%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L +D T+G GG+SR +I D+DP A ++ Sbjct: 5 HRSVLLEEAVTALITTADGTYVDGTYGRGGHSRRVLAALSEAGRLIGFDKDPEAAVHAED 64 Query: 77 TMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +FS F +F+ + D P++G GV+ DLGVSS Q+D G+RGFSFQ GPLDM Sbjct: 65 -LAATDSRFSFFHRSFADIPDIKRPEQGFSGVLLDLGVSSPQLDNGERGFSFQSDGPLDM 123 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++A+ +N+A + +L ++ GEE+ A+RIA+AI+ R+ P + T L+ + Sbjct: 124 RMDSSSGVTAAVWINKAPLAELIQVFRDYGEERFATRIANAIIDAREETPIERTGRLAQI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ + ++ HPATR FQA+RIF+N E+E+L L L GG L+V+SFHSLE Sbjct: 184 VKVAHPRWEPHK-HPATRVFQAIRIFINRELEDLESVLVRVIDTLDVGGRLVVISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+F S V R + +A + K V P+ E++A N R+RSA +R Sbjct: 243 DRIVKRFMRDESRGVSVPRGVPIRDADMGRRLRVVGKAVKPSTEELANNPRARSAVMRVA 302 Query: 315 MRTV 318 R Sbjct: 303 ERLA 306 >gi|229829369|ref|ZP_04455438.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM 14600] gi|229792532|gb|EEP28646.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM 14600] Length = 318 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 95/311 (30%), Positives = 164/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L + I L + +D T G G+SR +I +D+D A++ Sbjct: 1 MEFKHYSVMLRETIDALAVKSDGIYVDGTMGGAGHSRQIASRLSGRGRLICIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+E ++D+ ++ ++ ++ + +++ + + V+G++ DLGVSS Q+D +RGFS+ Sbjct: 61 AGKEKLKDFSDRVTIVRSNYERMRQILEELGIASVNGILLDLGVSSYQLDTPERGFSYMD 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 G L + +A D+VN+ + ++L R++ GE++ A IA IV RQ +T Sbjct: 121 EGALLDMRMDCRNPRTARDIVNEYSERELFRMIRNYGEDRFAKNIAKNIVLARQEKTIET 180 Query: 188 TQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +L+ +I+++V HPA R++QA+RI +N E++ L + L GG Sbjct: 181 VGELNEVIRRSVPRKIQVTGGHPAKRTYQAIRIELNRELDVLRDHIDEMIDLLADGGRFA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK F + + + + IT+K ++P +E++A N R Sbjct: 241 VISFHSLEDRIVKNAFQTAEDPCICPPEFPVCVCGRKSKGRVITRKPILPGKEELAENHR 300 Query: 306 SRSAKLRAGMR 316 SRSAKLR R Sbjct: 301 SRSAKLRVFER 311 >gi|309388985|gb|ADO76865.1| S-adenosyl-methyltransferase MraW [Halanaerobium praevalens DSM 2228] Length = 310 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ I L + LD T G G+S +IALDRD A+ + Sbjct: 4 KHQAVLLKEAIDYLEIKKDGIYLDGTLGRAGHSSEILHNLSEIGKLIALDRDTAAIKAVE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 K L + F L + K VDG++FDLGVSS Q+D +RGFS+QK+GP Sbjct: 64 SKFSKSK-SLILKHSNFQDLDQVLDQLKIKAVDGMLFDLGVSSPQLDNPERGFSYQKNGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN + +L +I+ GEE ++RIA IVK R+ +TT DL Sbjct: 123 LDMRMNSSQSLTAKTIVNNYSAAELEKIITEYGEENWSARIAEFIVKMRKEKVIETTDDL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + + HPA R+FQALRI NNE+E+L + A LK GG L++++F Sbjct: 183 VEVIKAAIPKAVRRSGGHPARRTFQALRIETNNELEQLKNLIDKAVSYLKPGGRLVIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + ITK + ++ + N RSRSA Sbjct: 243 HSLEDRIVKHKFRDLAKDCTCPPDFPICVCDKKSEVKVITKSPIQASEIEKEGNPRSRSA 302 Query: 310 KLRAGMRT 317 K+R + Sbjct: 303 KMRVAEKI 310 >gi|227824963|ref|ZP_03989795.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21] gi|226905462|gb|EEH91380.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21] Length = 311 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 168/307 (54%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLL + + + P + +D T G G+S + +I +D+D A+ + Sbjct: 7 HKSVLLRESVDWIVTDPKGIYVDCTLGGAGHSHAIAEELDPEGLLIGIDQDEDAIMAASK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + + + F L + + VDG+ FDLGVSS Q+D +RGFS+ GPL Sbjct: 67 RLEDAACKVKIVHSNFRNLGTILEGLNLQEVDGIFFDLGVSSYQLDTPERGFSYMHDGPL 126 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A+DVVN +DL ++ GEE+ + RIA IV++R+ P +TT DL Sbjct: 127 DMRMDQEGKLTAADVVNTYKEEDLADLIYKYGEERWSRRIAQFIVEKRKEKPLRTTSDLV 186 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I+ + + + HPA R+FQA+RI VN+E++ L + +A K LK GG + V++FH Sbjct: 187 SVIKAAIPKKARQDGPHPAKRTFQAIRIEVNDELKILDSTMETAVKHLKKGGRIGVITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K+ F + + + H + + K +P++ ++ N R+RSA+ Sbjct: 247 SLEDRIIKQSFKRMAKGCICPPELPVCVCGHKPELKKL--KEFIPSETELEDNPRARSAR 304 Query: 311 LRAGMRT 317 LR ++ Sbjct: 305 LRGAIKI 311 >gi|329964563|ref|ZP_08301617.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057] gi|328524963|gb|EGF52015.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057] Length = 319 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 157/312 (50%), Gaps = 16/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+S+ G ++ D+D Sbjct: 11 MKEEQTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSKEILSRLGDGGRLLGFDQDED 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A E F ++ F L +++ VD ++ DLGVSS D +RGFS Sbjct: 71 A-----ERNIVNDPHFIFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSERGFS 125 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ G +A+D+VN + + L I + GE K + ++A IVK R Sbjct: 126 FRFEGALDMRMNKRAGTTAADIVNAYDEERLADIFYLYGELKNSRKLASVIVKARALQKI 185 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 186 STIGEFLDIVKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+++HSLEDR+VK + + + A + A F+ + KV+VP + ++ N R Sbjct: 244 AVITYHSLEDRIVKNVMKTGNIEGKAEKDFY--GNVRAPFRLVNNKVIVPDESEIERNPR 301 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 302 SRSAKLRIAEKV 313 >gi|46445945|ref|YP_007310.1| S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|51316230|sp|Q6MEG4|RSMH_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46399586|emb|CAF23035.1| probable S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 316 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H VLLE+VI P KV +D T GAGG++ + + + + +D+DP A++ Sbjct: 7 PHRSVLLEEVIEAFQPVQLKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIAN 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +K++ L Q FSQ ++ + G + + DLGVSSMQ+D +RGFSF K GP Sbjct: 67 KRLEKWKQKILLKQGNFSQFDIFLKEIGFSSMDGLLVDLGVSSMQLDQPERGFSFSKDGP 126 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G +A+D+VN + DL +I GEEK+ A IV+ RQ TT DL Sbjct: 127 LDMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQARQVKQILTTTDL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++L++ ++ I+P T FQALRI VN E++ L Q + LK GG + V+SFH Sbjct: 187 ANLLKPAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFDYLKPGGRVAVISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK + + V + + +K + P ++++ N RSRSA Sbjct: 247 SLEDRIVKNELRLAASDKWETTGLGSGLFRDKKPVAKLVNRKPICPHEKEIKENPRSRSA 306 Query: 310 KLRAGMRTV 318 K R + Sbjct: 307 KFRIAEKLE 315 >gi|166365785|ref|YP_001658058.1| S-adenosyl-methyltransferase MraW [Microcystis aeruginosa NIES-843] gi|263456493|sp|B0JKS7|RSMH_MICAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166088158|dbj|BAG02866.1| S-adenosyl-L-methionine-dependent methyltransferase [Microcystis aeruginosa NIES-843] Length = 292 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 165/304 (54%), Gaps = 25/304 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VL +++IA LN PG LD T G GG+SR + V A+DRD A+ + Sbjct: 6 PHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKI 65 Query: 77 TMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ Y + +L+ F+ + DG++ DLGVSS Q D +RGFSF+ + LDM Sbjct: 66 SLAPYLDSRLTLWWGNFADYD--GQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM C ++A+D++N + K+L + GEE+ + IA +IV+ + TT+ + + Sbjct: 124 RMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQ--KRPFTTTTELAAVI 181 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + RIHPATR FQALRI VN E++ L Q L A LK+ G++ ++SFHSLE Sbjct: 182 ASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DRL+K F + + ITKK ++P++E+ A N RSRSAKLR Sbjct: 242 DRLIKYGFRENN-----------------SLKIITKKPIIPSREEQAKNPRSRSAKLRIA 284 Query: 315 MRTV 318 + Sbjct: 285 QKIE 288 >gi|56476234|ref|YP_157823.1| S-adenosyl-methyltransferase MraW [Aromatoleum aromaticum EbN1] gi|68565443|sp|Q5P6Y9|RSMH_AZOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56312277|emb|CAI06922.1| S-adenosyl-methyltransferase mraW [Aromatoleum aromaticum EbN1] Length = 312 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 166/314 (52%), Gaps = 11/314 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS+A HV VLL + + L PG V +D TFG GG+SR+ +IA D Sbjct: 1 MSAA-----PQHVTVLLAEAVEALAIRPGGVYVDGTFGRGGHSRAILAKLDADGRLIAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RDP A+ + + F++ D + + VDGV+ DLGVSS Q+D RG Sbjct: 56 RDPRAIEVARALPDPRLTAVHAPFSAFAEELDRLGLEHVDGVLLDLGVSSPQLDEAARGM 115 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM G + + + A+V +T +L GEE+ A IA AI R Sbjct: 116 SFRFDAPLDMRMDTSRGQTVAQWLADASVAQITEVLRDYGEERFAYAIAKAIAAARAGGA 175 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ L+ +++K V + + HPATRSFQALRIF+N E+EEL+ L +A + LK GG Sbjct: 176 VASTRQLAEIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELSLVLPAAVERLKPGGR 234 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFN 303 L+ +SFHSLEDR+VK+F S + A + + K P +VA N Sbjct: 235 LVAISFHSLEDRIVKRFMRDESRPPQLPSRLPLRAAELPQPRLRLVGKSQRPGPGEVAAN 294 Query: 304 RRSRSAKLRAGMRT 317 RSRSA +R RT Sbjct: 295 PRSRSAVMRVAERT 308 >gi|284039278|ref|YP_003389208.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74] gi|283818571|gb|ADB40409.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74] Length = 301 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 156/304 (51%), Gaps = 7/304 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H PVLL+ I LN PG +D TFG GG+SR G + D+D A + Sbjct: 1 MATYHEPVLLQACIDGLNLQPGGTYVDITFGGGGHSREILNQLEGGKLFGFDQDADARAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q + + + VDG++ DLG+SS QID +RGFS + L Sbjct: 61 AQAIGDSRLTFVASNFRNIKRYLRLYKAEQVDGILADLGISSHQIDTPERGFSTRFDADL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +A VVN+ +L RILG+ GE A A A+V R + P +T DL Sbjct: 121 DMRMNQNADKTARQVVNEYPEAELHRILGMYGEITNARTAAAALVSARSNRPLKTVNDLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + +Q+ K N+ + FQALRI VN E++ L + L LK GG L+V+S+HS Sbjct: 181 AALQRLAPRGKENK--YFAQVFQALRIEVNEELQALEEFLEQVPDILKPGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F + + + ++ P QSIT+K V T E++A N R+RSAKLR Sbjct: 239 LEDRLVKNFINKGKFQGEVEKDLFGNDLKP--LQSITRKPVEATPEEIARNPRARSAKLR 296 Query: 313 AGMR 316 + Sbjct: 297 IAEK 300 >gi|261414983|ref|YP_003248666.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371439|gb|ACX74184.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325451|gb|ADL24652.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] Length = 337 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 91/309 (29%), Positives = 151/309 (48%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H PV+L++ + LN P D T G GG+S + + A DRD AV Sbjct: 29 YHDPVMLKECLEGLNIKPNGTYSDCTLGGGGHSYAIAQELNSEGTLHAFDRDDEAVQFAT 88 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +F + FS+L + + +DGV++DLG+SS Q+D RGF+F PLD+ Sbjct: 89 KRLAGVAPKFIVHPVPFSELGNEIEPNSLDGVLYDLGISSHQVDDSSRGFTFVGDNPLDL 148 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM SA + + + D L + +A ++A I ++ + L S Sbjct: 149 RMDRRENVSAQEWLRSVSEDDFAAALRKNADMDRAFKLATRIKEKVGEITTEGRDVLPSD 208 Query: 195 IQKTVYFSKNNRIHPAT----RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+ V ++ A R FQA+R+ VN E++++ LR+A LK GG L+V+S+ Sbjct: 209 IKAVVEAVFPDKRREANSLLARVFQAIRMEVNGELKQIEDSLRAAVDCLKVGGRLVVMSY 268 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HS+EDR VK+ A + ++ + + + +K ++P+ +++ N R+RS Sbjct: 269 HSVEDRCVKETAAEFEKACICPENLPVCMCGGNHQRLKKVNRKPILPSADEINRNSRARS 328 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 329 AKLRIYERV 337 >gi|145641287|ref|ZP_01796867.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae R3021] gi|145274124|gb|EDK13990.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.4-21] Length = 321 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 171/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR S +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNSRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|71281391|ref|YP_271121.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H] gi|88909194|sp|Q47VQ1|RSMH_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71147131|gb|AAZ27604.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H] Length = 316 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 173/311 (55%), Gaps = 13/311 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 H+ VLL + + L +D TFG GG+S +IA+DRDP A++ Sbjct: 5 TTHISVLLNEAVDGLAITDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ D + F + F+ L + VDG++ DLGVSS Q+D +RGFSF K Sbjct: 65 EKFKDDKR--FLIEHQGFAALAEIAEKHELTGKVDGILLDLGVSSPQLDEAERGFSFMKD 122 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM G +A++ + A+V+D+T +L GEEK A RIA+AIV R+ P T Sbjct: 123 GPLDMRMDTSKGQTAAEWLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREETPLTRTS 182 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI KT + + HPATRSFQA+R+++N+E++++ + L ++ L GG L+V+S Sbjct: 183 QLAKLI-KTTAPQREIKKHPATRSFQAIRMYINSELDQIEKALVASLDVLAEGGRLVVIS 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK+F S R + S + ++ + + P+Q +V N RSR Sbjct: 242 FHSLEDRLVKQFMKKHSQGKKVPRGLPISEIELNKGKKLSLVGRRLKPSQTEVEENVRSR 301 Query: 308 SAKLRAGMRTV 318 S+ LR R Sbjct: 302 SSVLRVAERLE 312 >gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242] gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242] Length = 346 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 158/324 (48%), Positives = 204/324 (62%), Gaps = 8/324 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 HVPVLL +VI L P PG LDATFGAGGY+R+ + V+ALDRDP AV G+ Sbjct: 17 ARHVPVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGRP 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L +A FSQL + +G DGVVFD+GVSSMQ D +RGFSF+ GPL Sbjct: 77 LVEVARGRLTLVEARFSQLDEVARARGFAPLDGVVFDIGVSSMQFDEAERGFSFRGDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G +A+D+VN+A+ + L IL GEE+ A RIA AIV R+ APF +T+ L+ Sbjct: 137 DMRMEGRGQTAADIVNEADEETLADILYFYGEERAARRIARAIVHDRKLAPFASTRALAE 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + V + IHPAT+SFQALRI VN+E+ EL GL AE+AL GG L VV+FHSL Sbjct: 197 MIAR-VAPGRPGDIHPATKSFQALRIAVNDELGELLDGLAGAERALAEGGRLAVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+FFA R G+ +P A P I ++ V PT+E+ N R+RSAKL Sbjct: 256 EDRIVKQFFAERCGRGETGSRRLPGEAAPPPRSFICEGRQPVAPTREETERNPRARSAKL 315 Query: 312 RAGMRTVERSIE-DDSFVHLPRLP 334 R RT ++ DD L RLP Sbjct: 316 RFATRTAGPALPLDDRLARLARLP 339 >gi|149377270|ref|ZP_01895017.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893] gi|149358458|gb|EDM46933.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893] Length = 326 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 181/321 (56%), Gaps = 12/321 (3%) Query: 9 MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62 M++ H H VLL+ + LL P V +D TFG GG+SR G ++ Sbjct: 1 MTAGREHEPAGQYRHRSVLLDSAVDLLVNDPDGVYVDGTFGRGGHSRLILGRLGQGGKLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQID 119 +D+DP A+ ++ + +F F +F++L + V+GV+ DLGVSS Q+D Sbjct: 61 GIDKDPDAIQVARD-LSASDARFQPFHGSFAELGAAAEAQGWMKVNGVLLDLGVSSPQLD 119 Query: 120 CGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF + GPLDMRM SA+ + +A+ KD+ ++ GEEK + RIA +V+ Sbjct: 120 DAARGFSFMRDGPLDMRMDPGQAPSAAQWLAEADEKDIANVIWRYGEEKFSRRIARLVVE 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RR+ AP +TT+ L+SL+ + V + ++ HPATR+FQA+RIF+N E+E+L GL +A + Sbjct: 180 RRKEAPLETTRQLASLVSEAVPKKEKHK-HPATRTFQAIRIFINRELEDLELGLNAAVEK 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L+V+SFHSLEDRLVK+F + + + + A + K E Sbjct: 239 LMPGGRLVVISFHSLEDRLVKRFMRDLARGPRLPKGVPVTAEQEASAFRLIGKANKADTE 298 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +V+ N R+RSA +R R E Sbjct: 299 EVSDNVRARSAVMRVLERIPE 319 >gi|255262076|ref|ZP_05341418.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62] gi|255104411|gb|EET47085.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62] Length = 326 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 153/325 (47%), Positives = 201/325 (61%), Gaps = 9/325 (2%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPF 69 +A H+PVLL ++ P LD TFGAGGY+R G++V +DRDP Sbjct: 4 AASSPNDAPHIPVLLRPLLVACAPVS-GRWLDGTFGAGGYTRGLIDDGADVVYGVDRDPL 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + +Y ++ L + TFS L Y D +DGVV DLGVSSMQ+D +RGFSF + Sbjct: 63 AFDMAAPWVGEYGDKIKLVEGTFSALDTYADD--LDGVVLDLGVSSMQLDLAERGFSFMR 120 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS SG SA+D+VN A+ L IL GEE+ + RIA AIVK R P TT Sbjct: 121 DGPLDMRMSQSGPSAADIVNNADETALANILYDFGEERASRRIARAIVKAR---PLNTTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+++I+ + K N+ HPATRSFQA+RI VN+E ELA+GL +AE+ALK GGLL VVS Sbjct: 178 ELAAVIESCLPRPKPNQSHPATRSFQAIRIAVNDEYGELAEGLMAAERALKPGGLLAVVS 237 Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+EDR+VK+F R+GK R+ + A A F+ +T+K V P +++ N RSRS Sbjct: 238 FHSVEDRMVKRFMQERAGKTGRGSRYAPETEAIEAAFEIVTRKAVGPDDDELQENPRSRS 297 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPR 332 AKLR RT S E D + +P Sbjct: 298 AKLRVARRTDAPSGEIDRKTIGMPG 322 >gi|317154466|ref|YP_004122514.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis Aspo-2] gi|316944717|gb|ADU63768.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL +VI L P PG LD T G GG+S + + G+ + LDRD A++ E Sbjct: 11 HTTVLLHEVIEWLRPKPGGRYLDGTLGMGGHSHALLERAGQGAELAGLDRDAQALALAGE 70 Query: 77 TMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ F L + F + D + + VDG V DLGVSS+Q+D +RGFSF GPL Sbjct: 71 RLAGMGDRAHLFRLPFSRFEEALDALGWETVDGAVLDLGVSSLQLDEAERGFSFLSDGPL 130 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA+D+VN DL RI+ GE+ A +IA AI++ R T L+ Sbjct: 131 DMRMDPDCGPSAADLVNTLKHGDLARIIRTWGEDPLAGKIASAILRARDKEAIMRTLRLA 190 Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + R HPATR+FQ LRI VN E EEL L++ L G L ++SF Sbjct: 191 EIVRLAYPPKMRHTARNHPATRTFQGLRIAVNREAEELEHYLQAIVGRLAPGARLAIISF 250 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR VK+ F + + H M + + +T+K ++P+ +++A N RSRSA Sbjct: 251 HSLEDRAVKRAFLADAKGCHCPPHQMHCTCNGVPSLKVLTRKPLIPSDDEMARNPRSRSA 310 Query: 310 KLRAGMR 316 KLR R Sbjct: 311 KLRVAER 317 >gi|294784023|ref|ZP_06749345.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA] gi|294479835|gb|EFG27614.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA] Length = 314 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y ++ + + F + VDG++ D+GVSS Q+D +RGFS++ Sbjct: 68 KRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVK 127 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA DVVN + ++L+RI+ GEE+ A +IA I + R+ P TT +L Sbjct: 128 LDMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 VALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ IT+K ++P ++++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIPIEDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|332885960|gb|EGK06204.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas mossii DSM 22836] Length = 303 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 16/308 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 H+PVLL + I +N P + +D TFG GG+SR ++ A D+D A+ Sbjct: 4 AYHIPVLLHESIDGMNIHPDSICVDVTFGGGGHSREILSRLGDKGHLYAFDQDEDAIKN- 62 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-S 130 + +F+ ++ F L++++ VD ++ DLGVSS D DRGFSF+ Sbjct: 63 ----IEPSNKFTFIRSNFRYLKNFIKYHNVDGVDAILADLGVSSHHFDAEDRGFSFRFED 118 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ G +A+ ++N + L + + GE KQ+ RIA IVK R+ P++ T Sbjct: 119 SDLDMRMNRKGGKTAAQILNTYTEEKLADVFYLYGELKQSRRIASVIVKTRKEKPYKKTS 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL + + V + + A ++FQALRI VN E+E L + L A LK GG L V++ Sbjct: 179 DLLATLNSFVGRGEKEKKILA-QAFQALRIEVNEEMEVLKEMLTQALDILKPGGRLSVIT 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK FF + + + + + P F+ I KV+ P++++ N RSRSA Sbjct: 238 YHSLEDRIVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVITPSKDEEERNPRSRSA 295 Query: 310 KLRAGMRT 317 KLR + Sbjct: 296 KLRVAEKV 303 >gi|311693447|gb|ADP96320.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [marine bacterium HP15] Length = 327 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 M++ + G H VLL+ + L P +D TFG GG+SR ++ Sbjct: 1 MTTDRNQEAGAAYSHRSVLLDSAVDYLVNDPDGYYVDGTFGRGGHSRLILGRLGPSARLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQID 119 +D+DP A+ +E + +F F +F++L + V+GV+ DLGVSS Q+D Sbjct: 61 GIDKDPEAIRAAKE-LEAQDNRFHSFHGSFAELGAAVVGQGWQTVNGVLLDLGVSSPQLD 119 Query: 120 CGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF + GPLDMRM+ SA++ + A+ D+ ++ GEEK + RIA +V+ Sbjct: 120 DASRGFSFMRDGPLDMRMNTEQSPSAAEWLATADESDIANVIFRYGEEKFSRRIARLLVE 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RRQ AP +TT+ L+ L+ + V + ++ HPATR+FQA+RIF+N E+E+L GL+SA Sbjct: 180 RRQEAPVETTRQLAELVSEAVPKKEKHK-HPATRTFQAIRIFINRELEDLEVGLQSAVDH 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L+V+SFHSLEDRLVK+F + + + + A + K E Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPQLPKGVPVTAEQEASDFRLVGKASKAGAE 298 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 +V+ N R+RSA +R RT Sbjct: 299 EVSDNVRARSAVMRVLERTD 318 >gi|262831468|sp|C5WIJ4|RSMH_STRDG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYNQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A DVVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + F+ +++K ++P+QE++A N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSRKPILPSQEELAANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|298207891|ref|YP_003716070.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus HTCC2559] gi|83850532|gb|EAP88400.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus HTCC2559] Length = 298 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVLL + + LN P V +D TFG GG+S+ + A D+D A+ Sbjct: 1 MEYHNPVLLHETVDGLNIKPDGVYVDVTFGGGGHSKEILNRLGPNGKLFAFDQDQDALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + +++ K VDG++ D GVSS Q D +RGFS + Sbjct: 61 A---LEDDRFTLIPQNFRYAKRFVRVQGYKTVDGILGDFGVSSHQFDVAERGFSTRFDSR 117 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA +VVN L ++L GE + A ++A AI R+ P +T++ L Sbjct: 118 LDMRMNQNDALSAYEVVNTYEEGKLRQVLSQYGELRNAPKLARAIYGARKDTPIETSEHL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + K ++ + +QA+RI VN E+E L + L+ E L GG L ++S+H Sbjct: 178 KEVINSFLPRGKEHK--MLAQIYQAIRIEVNQELEVLKEFLKQTEDMLTTGGRLSLISYH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK++ S + + + P F+ + K++VP +++A N R+RSAKL Sbjct: 236 SLEDRLVKRYIRSGLFEGEPEKDFYGNIEVP--FKKV-GKLIVPNAKEIATNNRARSAKL 292 Query: 312 RAGMR 316 R R Sbjct: 293 RVAER 297 >gi|238761549|ref|ZP_04622524.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia kristensenii ATCC 33638] gi|238700063|gb|EEP92805.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia kristensenii ATCC 33638] Length = 320 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 170/321 (52%), Gaps = 15/321 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ H VLL++ + LN + +D TFG GG+SR +IA+DR Sbjct: 4 NNKTVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ + +FS+ FS L YV + ++GV+ DLGVSS Q+D + Sbjct: 64 DPQAIEAAKSI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPE 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + GPLDMRM G+SA+D + +A D+ +L GEE+ A R+A AIV+R Sbjct: 121 RGFSFMRDGPLDMRMDPTRGLSAADWLMKAGADDIAWVLKTFGEERFAKRLAKAIVERNL 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L Sbjct: 181 TQPMTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQE 298 G L V+SFHSLEDR+VK F S + + A + ++P Sbjct: 240 EGRLSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDA 299 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +VA N R+RS+ LR R E Sbjct: 300 EVAENPRARSSVLRFAERIKE 320 >gi|256827376|ref|YP_003151335.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM 15641] gi|256583519|gb|ACU94653.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM 15641] Length = 321 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 177/323 (54%), Gaps = 18/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIAL 64 MS+ + H+PVLL + + L G+ +DAT G G+S + + ++ + Sbjct: 1 MSAVTNE--YRHIPVLLTECLDYLRLETGRTYVDATLGGAGHSIEAAKHI-QTAGTLVGI 57 Query: 65 DRDPFAVSCGQETM----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQ 117 D+D A++ + + D + + L + F + + + VD +FDLGVSS+Q Sbjct: 58 DQDEVALTAARTRLLALPTDKRPELCLLRGNFGDMDELLLQADIPSVDAFLFDLGVSSVQ 117 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHA 175 ID RGFSF++ PLDMRM + ++++N N DL RI+ +E+ A+RIA Sbjct: 118 IDTPSRGFSFKEKAPLDMRMDPGKSTLTAAEIINTYNAADLARIIRTYSDERWATRIADF 177 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV+ R A +T+ L +I+ + S + + HPA R+FQALRI VN+E++ L QGL + Sbjct: 178 IVQARTHARIETSDQLVDIIKAAIPASARRSGGHPAKRTFQALRIEVNSELDVLQQGLEA 237 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVV 293 A + L GG L V+S+HSLEDR+VK+ F S + + + + IT+K V Sbjct: 238 AIRWLAPGGRLAVISYHSLEDRIVKETFLRFSRGCTCPPDLPVCVCGNVPIIKVITRKPV 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +PT E++ N R+RSAKLR + Sbjct: 298 LPTPEEIERNPRARSAKLRVAEK 320 >gi|145633140|ref|ZP_01788872.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655] gi|144986366|gb|EDJ92945.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655] Length = 321 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 18/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A+ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIVEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA +T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 298 QPSDAEIQANPRSRSAILRVAERI 321 >gi|328950951|ref|YP_004368286.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus hydrothermalis DSM 14884] gi|328451275|gb|AEB12176.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus hydrothermalis DSM 14884] Length = 281 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 120/298 (40%), Positives = 167/298 (56%), Gaps = 19/298 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL + + LL G + +DAT G G++R + G VI D+DP A++ + Sbjct: 3 HVPVLYHETLELLAVQRGGLYVDATLGGAGHTRGILERGGQVIGFDQDPEAIARVRALRL 62 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 D + + VDGV+ DLGVSS D +RGFS++ GPLDMRMS Sbjct: 63 DGLTLVEGNFRHLEAHLNELGVAEVDGVLADLGVSSYHFDNPERGFSYRHEGPLDMRMSG 122 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G +A+DVVN V++L RIL GEE +A RIA I + R+ P +TT L+ ++++ V Sbjct: 123 EGPTAADVVNTYPVEELARILRTFGEEPRAWRIARRIAEVREQQPIRTTTQLAEVVRQAV 182 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + HPA ++FQALRI+VN+E+ L L +A + LK GG L V+SFHSLEDR+VK Sbjct: 183 GW--RGAGHPARKTFQALRIYVNDELGALEAFLEAAARVLKPGGRLAVISFHSLEDRIVK 240 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +F A FQ +TKK + P+ + A N R+RSAKLR G+R Sbjct: 241 RFLKE-----------------DARFQVLTKKPITPSDAERATNPRARSAKLRGGVRV 281 >gi|326795778|ref|YP_004313598.1| ribosomal RNA small subunit methyltransferase H [Marinomonas mediterranea MMB-1] gi|326546542|gb|ADZ91762.1| Ribosomal RNA small subunit methyltransferase H [Marinomonas mediterranea MMB-1] Length = 312 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 183/314 (58%), Gaps = 9/314 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + + +H+ V+L++ + +L +D TFG GG++R ++ D+DP A Sbjct: 1 MTSSEHEHISVMLDESVEMLVTNESGQYVDGTFGRGGHTRLVLSKLRDGKLLGFDKDPVA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 + G++ + +F + Q +F+ + D++P +DG++ DLGVSS Q+D +RGFS Sbjct: 61 IEFGRK-LEAEDSRFEIVQDSFANMLDHIPAVFGTEKIDGIMMDLGVSSPQLDDAERGFS 119 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM+ G+SA++ + A K++ ++ GEE+ + RIA AI ++R AP Sbjct: 120 FMNDGPLDMRMNPDQGMSAAEWIAVAAEKEIADVMYQYGEERFSRRIAKAICEKRLEAPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT LS ++ + + + +PATR+FQ +RI++NNE+ +L +GL A +LK GG L Sbjct: 180 TTTAQLSKIVAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEKGLEVAADSLKVGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFHSLEDR+VK+F S RH+ NAH + K P++++V N R Sbjct: 239 VVISFHSLEDRIVKRFMKKMSKGPDLPRHLPIQNAHLDIKFKTVGKATKPSKDEVTSNVR 298 Query: 306 SRSAKLRAGMRTVE 319 SRSA LR RT + Sbjct: 299 SRSAVLRVLERTRD 312 >gi|304439975|ref|ZP_07399868.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371467|gb|EFM25080.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC BAA-1640] Length = 314 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 9/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +H+PVL + I LN + +D T G G+S K ++ +D+D FA+ Sbjct: 2 TNFEHIPVLFNETIEGLNIRENHIYMDCTIGGAGHSSEILKRLNGTGLLVGIDQDEFALY 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ +R+ + F LF F ++ + VDG++ DLGVSS Q D RGFS+ Sbjct: 62 TSEKRLREIGDNFKLFNNNFELFRENLDSLGISKVDGILLDLGVSSHQFDEASRGFSYNY 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + I+A D+VN + + L +I GEEK + R+A IVK R S +TT Sbjct: 122 DAPLDMRMNKSTRITAKDIVNTYSKEALMKIFYEYGEEKWSKRVAEFIVKARNSKTIETT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + ++ HPA R FQALRI N+E+ L + L ++L GG + V Sbjct: 182 FELVEIIKAAIPKGARSGGPHPAKRIFQALRIETNDELGVLRRSLGDMIESLNPGGRICV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + + + + IT+K + ++E++A N R+ Sbjct: 242 ISFHSLEDRIVKDTFKYYYLDCICPPEVPVCTCNKKREIEIITRKPITASKEELAINNRA 301 Query: 307 RSAKLRAGMRTV 318 SAKLR + Sbjct: 302 HSAKLRIAEKLE 313 >gi|257066696|ref|YP_003152952.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548] gi|256798576|gb|ACV29231.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548] Length = 306 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 161/310 (51%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H+PVL ++ I LN P + LD T G GG+S+ + +IA+D+D A+ Sbjct: 1 MKFEHIPVLAKETIENLNINPDGIYLDLTLGKGGHSKMILERLSDKGRLIAIDQDKEAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E +RD+ + + F + + D +DG + D+GVSS QID DRGFS+ K Sbjct: 61 AAKENLRDFSN-VTFVNSNFENFEKALEDLGLDLIDGALMDIGVSSYQIDNADRGFSYMK 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +A +VN+ + +L RI GEE+ A IA IV R TT Sbjct: 120 DGPLDMRMNQDNELTAEVIVNEYSQDELERIFFEYGEERFARAIARNIVNLRDEERIDTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++ K++ K+ HP R FQALRI VN E+E L + LK G + ++ Sbjct: 180 FKLREIVAKSI---KSQDAHPEKRVFQALRIEVNRELEVLENTIERVVDHLKKDGRIAII 236 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + H A + IT+K V ++ ++ N RS+ Sbjct: 237 TFHSLEDRIVKNKFKDLARDCICPPEFPVCVCDHRAKIKIITRKPVTASKAELRDNSRSK 296 Query: 308 SAKLRAGMRT 317 AKLR G R Sbjct: 297 PAKLRVGQRI 306 >gi|300813315|ref|ZP_07093670.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512586|gb|EFK39731.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 320 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 8/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 HV VL +V+ LN K+ +DAT G G+S+ +I +D+D A+ Sbjct: 1 MEFKHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIK 60 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + +Y+ F+ F ++ D + K VDG++ DLGVSS Q D G RGFS++ Sbjct: 61 KSHEVLSEYENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGKRGFSYRFD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A +VN+ + +L RI+ GEE A RIA IV+ R+ TT Sbjct: 121 SELDMRMDKTLPLTAKTIVNEYSKDELYRIIKEYGEENWAKRIAEFIVQERKIKKINTTF 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL +I+K V + + HPA R+FQALRI VN+E+ L + + + L GG L ++ Sbjct: 181 DLVEVIKKAVPKGARRDGPHPAKRTFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAII 240 Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK F S V +I + + IT+K +VPT+E++ N RS Sbjct: 241 SFHSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSH 300 Query: 308 SAKLRAGMRTV 318 SAKLR + Sbjct: 301 SAKLRVAEKLE 311 >gi|182414441|ref|YP_001819507.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1] gi|262824715|sp|B1ZU25|RSMH_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|177841655|gb|ACB75907.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1] Length = 306 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 117/302 (38%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVLL +V+ L P LD TFG GG++R+ + + V+ALDRDP A Sbjct: 5 HQPVLLREVLGFLAPRARGRYLDCTFGGGGHTRALLEAAAEVRVVALDRDPAAQPRAAAL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + E+F F +L + + G DGV+FD GVSS Q+D +RGFSF+ P DMRM Sbjct: 65 RETFGERFEFIDRDFGRLAELPHE-GFDGVLFDFGVSSFQLDETERGFSFRHDAPADMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+ AS + A + L R + GEE+ RI AI R + T L+ LI Sbjct: 124 DPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDARGTGALARTASLAELIA 183 Query: 197 KTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + +IHPATR+FQ +RI VN+EI + + L +A L GG+L V+SFHSLE Sbjct: 184 AAIPACDRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFAKLAPGGVLCVISFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR K+FF G+ + P + + +T++ V P +++A N RSRSAKLRA Sbjct: 244 DRPAKQFFRRMCGQPESAADATPQDLRVKLADPLTRRPVTPADDELAANPRSRSAKLRAL 303 Query: 315 MR 316 R Sbjct: 304 RR 305 >gi|116494758|ref|YP_806492.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei ATCC 334] gi|122263824|sp|Q039S2|RSMH_LACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116104908|gb|ABJ70050.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei ATCC 334] Length = 313 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 156/312 (50%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L P +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNHLTTGRLIAFDQDEAAIAT 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Q +L F L D + VDG+++DLGVSS Q D RGFS++ Sbjct: 62 VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ DL RI GEE + +IA I + R P TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S R + A ++ + +K ++P++E++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPNYRLVNRKPILPSEEELAVNHRAH 301 Query: 308 SAKLRAGMRTVE 319 SAKLR + + Sbjct: 302 SAKLRVIEKIHD 313 >gi|113460496|ref|YP_718560.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 129PT] gi|123031127|sp|Q0I1E1|RSMH_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112822539|gb|ABI24628.1| S-adenosyl-methyltransferase [Haemophilus somnus 129PT] Length = 319 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 118/324 (36%), Positives = 168/324 (51%), Gaps = 20/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 M +H VLL + + L + +D TFG GG+SR S +IA+D Sbjct: 1 MQDTFSS--PEHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A+ Q +F + +FS + D +DG++ DLGVSS Q+D Sbjct: 59 RDPQAIQVAQNI---QDSRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 115 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA++ + + +DL +L GEE+ A RIA AIV Sbjct: 116 ERGFSFMKDGPLDMRMDTTQGLSATEWLRLVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 175 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA + L+ +Q K+ HPATRSFQA+RIF+N+E++EL + L A Sbjct: 176 KSAVQSGAEPLNRTLQLAELIAQSVPFKDKYKHPATRSFQAIRIFINSELDELEKVLNGA 235 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVV 293 L G L ++SFHSLEDR+VK F +S + + Q + K + Sbjct: 236 LNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPVGKAI 295 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 +PT++++A N RSRSA LR R Sbjct: 296 MPTEQEMAANVRSRSAVLRIAERI 319 >gi|325286918|ref|YP_004262708.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga lytica DSM 7489] gi|324322372|gb|ADY29837.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga lytica DSM 7489] Length = 298 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL++ + L+ V +D TFG GG+SR +I D+D A++ Sbjct: 1 MSYHNPVLLKESVDGLSIKEDGVYVDVTFGGGGHSREILSRLGEKGRLIGFDQDEDALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++F L F ++ + + VDG++ D GVSS Q D +RGFS + Sbjct: 61 ALD-----DDRFLLINENFRYIKQFLKFHGIRKVDGILGDFGVSSHQFDKAERGFSTRFD 115 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRMS SA DVVN DL R+L G+ + A+ +A+ I+ RQ +TT Sbjct: 116 ADLDMRMSQKNTVSAFDVVNNYEYNDLRRVLFQYGDLRSANAMANTIIDYRQEGEIKTTD 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +++K + K ++I + +QA+RI VN EI+ + + L L GG L ++S Sbjct: 176 QLKQVLKKFLPAFKEHKI--LAQIYQAIRIEVNQEIQVIKEFLEQTNDLLVEGGRLSLIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK++ + + + + P F+ + ++VP++E++A N R+RSA Sbjct: 234 YHSLEDRLVKRYIRAGKFEGEPEKDFYGNIDVP--FKKV-GGLIVPSKEEIAVNNRARSA 290 Query: 310 KLRAGMR 316 KLR R Sbjct: 291 KLRIAER 297 >gi|323497887|ref|ZP_08102896.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326] gi|323316932|gb|EGA69934.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326] Length = 316 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 167/316 (52%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + DY D VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EANKI---DDPRFTIIHGPFSGMADYAKDYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-- 185 K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA AIV R++ Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 186 -QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P++++V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEDQIKAMGSANLKPVGKAIKPSKQEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EMNARSRSSVLRLAEK 315 >gi|304413635|ref|ZP_07395079.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283726|gb|EFL92120.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella insecticola LSR1] Length = 313 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 171/311 (54%), Gaps = 15/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLLE+ + LN + +D TFG GG+SR +IA+DRDP AV + Sbjct: 6 KHESVLLEQAVHCLNLRDDGIYVDGTFGLGGHSRLILSRLGQQGRLIAIDRDPQAVEVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L Y + +DGV+FDLGVSS Q+D RGFSF + G Sbjct: 66 SI---TDPRFSIIHGPFSELARYAQESDLIGRIDGVLFDLGVSSPQLDNPQRGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA+ + +A+ ++ +L GEE+ A R+A AIV+R Q P TQ+ Sbjct: 123 PLDMRMDPSRGLSAAQWLMKASADEIAWVLKTFGEERFAKRLARAIVERNQQQPMHRTQE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + HPATRSFQA+RI++N+E+EE+ + L ++ L G + V+SF Sbjct: 183 LADLIVN-ILPMREKHKHPATRSFQAIRIYINSELEEITRALEASLSVLAPKGRISVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F +S M + + T ++P+ E+VA N R+R Sbjct: 242 HSLEDRIVKNFIRQQSRGPQIPVGMPLTETQLRLMGGANLKTMGKMMPSAEEVAENPRAR 301 Query: 308 SAKLRAGMRTV 318 SA LR R Sbjct: 302 SAVLRFAERIA 312 >gi|316984918|gb|EFV63874.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76] gi|325199600|gb|ADY95055.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76] Length = 316 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A+ +DL ++ GEE+ + RIA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|300741256|ref|ZP_07071277.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567] gi|300380441|gb|EFJ77003.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567] Length = 359 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 176/314 (56%), Gaps = 10/314 (3%) Query: 15 HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPV+L++ + LL P V++D T G GG++ + + SN+ I +DRD Sbjct: 43 QAQERHVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQ 102 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + + +F + ++D + VDGV+ DLGVSSMQ+D RGF+ Sbjct: 103 AHAIAAERLARFGNRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFA 162 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ +A VVN+ + L RI+ GEEK A+RIA IV++R+ PF Sbjct: 163 YSYDAPLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPF 222 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L + IQK V + + HPA R+FQALRI VN+E+E L + + +A AL+ GG Sbjct: 223 TTTGELVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGR 282 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +S+HSLED++VK+ + + + H + IT+ PT+ ++A N Sbjct: 283 FVAMSYHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENP 342 Query: 305 RSRSAKLRAGMRTV 318 R+ SAKLRAG + Sbjct: 343 RAASAKLRAGEKIK 356 >gi|221632091|ref|YP_002521312.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159] gi|262825878|sp|B9L274|RSMH_THERP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221156426|gb|ACM05553.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159] Length = 326 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 126/327 (38%), Positives = 176/327 (53%), Gaps = 12/327 (3%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 M ++ + + T H PVLL + L P G +DATFG GG+SR+ + Sbjct: 1 MSERARLALEDPLSTT---HEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAP 57 Query: 59 -SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVS 114 V+A+D DP AV+ + Y + F L VDG++FDLG+S Sbjct: 58 SGQVLAIDADPAAVARARALAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLS 117 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S Q+ RGFSFQ +GPLDMR + G A+ +VN + ++L + GEE +A IA Sbjct: 118 SDQLADPARGFSFQLAGPLDMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIA 177 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R P +TT L++L+ + V S+ RIHPATR FQALRI VN E+E LA GL Sbjct: 178 QTIVAERARQPIETTTQLAALVAR-VAGSRRERIHPATRVFQALRIAVNQELEALAAGLA 236 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKV 292 A + L+ GG L+V++FHSLEDRLVK+FF + + + H + +T + Sbjct: 237 QAVELLRPGGRLVVIAFHSLEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRP 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVE 319 V P+ E++ N RSRSA+LRA R Sbjct: 297 VRPSAEEITRNPRSRSARLRAAERIAH 323 >gi|308271432|emb|CBX28040.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [uncultured Desulfobacterium sp.] Length = 312 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+PV+ ++VI L+ PGK+ D T G G++++ C+ ++ +D+D A+ Sbjct: 1 MHPYHIPVMTKEVIHYLDCKPGKIYADCTIGGSGHAKAICEKIMPNGILVGIDQDKDAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + LF F L +++ + +V DLG+S QID RGFSF+ Sbjct: 61 NAKKILFPHLPNIHLFHGNFVNLSEFLLKCNITKVDGIVLDLGLSLHQIDSSKRGFSFKN 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + PLDMRM+ +A +++N+ + +L +++ GEE A IA IVK R+ +T Sbjct: 121 TEPLDMRMNTDSDINAGNLINKLDEVNLWKLIRDYGEEPWARNIARNIVKARKDCEIKTN 180 Query: 189 QDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +L +I ++ +IHPATR F ALRI VNNE+E L++ + + L G L Sbjct: 181 AELVKIISDSIPKKIQYKQKIHPATRVFMALRIAVNNELERLSEFMDNVADLLNPEGRLC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK+ + + + + +++ KK + P +E+ N Sbjct: 241 VLTFHSLEDRIVKQKIREMEKECVCPPNFPKCICNKIKLVRAVNKKAIAPGKEETDINPM 300 Query: 306 SRSAKLRAGMRT 317 +RSAKLR R Sbjct: 301 ARSAKLRVAERI 312 >gi|293392868|ref|ZP_06637186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera DSM 4582] gi|291424727|gb|EFE97938.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera DSM 4582] Length = 313 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 175/314 (55%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS L YV ++ +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAKSI---EDPRFTIVHGPFSDLSHYVRERELVGKIDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNKTEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L G L + Sbjct: 180 TKELADLIADA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + A +S+ K ++P++ +VA Sbjct: 239 ISFHSLEDRIVKRFMRHHSRGAQVPAGLPLTEAQLRELGGRNLKSLGK--MMPSEAEVAE 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRIAER 310 >gi|77361427|ref|YP_341002.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis TAC125] gi|88909212|sp|Q3IFZ6|RSMH_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76876338|emb|CAI87560.1| S-adenosyl-dependent methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 312 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 176/311 (56%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +HV VL+++ I L P + +D TFG GG+S + A+D+DP A+ Sbjct: 3 AQFEHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGSEGRLQAIDQDPQAIK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ +F++ FS L VDG++ D+GVSS Q+D RGFSF Sbjct: 63 SAEKF--ADDPRFAIAHTRFSNLYGVAEQNDLIGKVDGILLDIGVSSPQLDDALRGFSFM 120 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM +G SA+ + +A + D+T ++ LGEEK RIAH +++ R+ P T Sbjct: 121 KDGPLDMRMDPTTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L+SA K LK GG L+V Sbjct: 181 TKQLADLVDEAV-PVKDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKPGGRLVV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F +S R + ++A + K + P+ +V N R Sbjct: 240 ISFHSLEDRIVKQFIRKQSRGETLPRGLPLTDAQINQNLTLKAVGKAIKPSAAEVERNPR 299 Query: 306 SRSAKLRAGMR 316 SRS+ LR R Sbjct: 300 SRSSVLRIAQR 310 >gi|323142009|ref|ZP_08076860.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT 12067] gi|322413541|gb|EFY04409.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT 12067] Length = 310 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 166/312 (53%), Gaps = 12/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 H +LL + + L + +D T G G+S +F + G +I +D+D A++ Sbjct: 1 MEFKHTSILLAESVDFLITDKNGIYVDCTMGGAGHSSAFAAQLEAGGLLIGIDQDDDAIA 60 Query: 73 CGQETMRDYKEQFS----LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 G E + + + FSQ+ D + +DG+ FDLGVSS Q+D +RGFS+ Sbjct: 61 AGSERLLNKFTCKTAVAKSNFEIFSQVLDSMGIDEIDGIFFDLGVSSYQLDTPERGFSYM 120 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM+ + A +VN ++L I+ GEE+ A RIA IV R+ P T Sbjct: 121 HDGPLDMRMNKEASLDAEYIVNHYKEEELADIIHRYGEERWAKRIAQFIVAARKEKPLTT 180 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+K + ++ + HPA R+FQA+RI VNNE+ LA + A LK+GG + Sbjct: 181 TFELVDVIKKAIPKGARLDGPHPAKRTFQAIRIEVNNELGILADTMERAVNRLKSGGRIG 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR++K+ FA + + + + +VP++ +V N R Sbjct: 241 VITFHSLEDRIIKQTFAKLAKGCTCPPQLPVCVCGKKPLLRKTGN--IVPSKAEVEENPR 298 Query: 306 SRSAKLRAGMRT 317 SRSA+LR ++ Sbjct: 299 SRSARLRYAIKI 310 >gi|120555371|ref|YP_959722.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8] gi|263456394|sp|A1U3G6|RSMH_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120325220|gb|ABM19535.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8] Length = 319 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 176/321 (54%), Gaps = 12/321 (3%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62 M++ + H VLL+ + L +DATFG GG+SR G ++ Sbjct: 1 MTARQDDQANEGYQHRSVLLDAAVDYLVTDENGRYVDATFGRGGHSRLILGKLGQGGQLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQID 119 +D+DP A++ +E + +F + +F++L + VDGV+ DLGVSS Q+D Sbjct: 61 GIDKDPEAIAVARE-LASGDSRFQWYHGSFAELDLALERQGWSQVDGVLMDLGVSSPQLD 119 Query: 120 CGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF + GPLDMRM+ SA+ + +A+ +++ ++ GEE+ + RIA +V+ Sbjct: 120 DASRGFSFMRDGPLDMRMNPQQEPSAAQWLAEADEREIADVIWRYGEERFSRRIARLVVE 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RRQ P +TT+ L+ L+ + V + ++ HPATR+FQA+RIF+N E+E+L GL +A Sbjct: 180 RRQEQPIETTRQLAELVAEAVPKKEKHK-HPATRAFQAIRIFINRELEDLEAGLAAAVDR 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L+V+SFHSLEDRLVK+F + + + + + K ++ Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPKLPKGIPVTAEQEESGFQLIGKASKANEQ 298 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 ++ N R+RSA +R R Sbjct: 299 EITENVRARSAVMRVLERKAN 319 >gi|149275993|ref|ZP_01882138.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39] gi|149233421|gb|EDM38795.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39] Length = 301 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 156/308 (50%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 HVPV+L++ I LN P V +D TFG GG+SR K +I+ D+DP A Sbjct: 2 ENNYHVPVMLKECIDGLNIKPDGVYVDVTFGGGGHSREILKHLGKDGVLISFDQDPDA-- 59 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +F F+ L++ + K VDG++ DLGVSS Q D +RGFS + Sbjct: 60 ---QLNKIDDPRFYFVDQNFAFLKNNLRLLGYKTVDGILADLGVSSHQFDVPERGFSTRF 116 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM G ASDV+N L +I GI GE K A +A+A+V R P + Sbjct: 117 ESLLDMRMDKQGALKASDVLNTYTEDQLHKIFGIYGEVKNAKSLANAVVTGRLERPIASL 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D + K ++ + FQALRI VN EI L L LK GG L+V+ Sbjct: 177 ADFKRAAAAHIPKGKEHK--YMAQVFQALRIEVNAEITVLESFLMQTADVLKEGGRLVVM 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR VK F A K + + P F+ IT+K +V ++V N R+RS Sbjct: 235 SYHSLEDRPVKSFIAKGKFKGEVEKDFFGNELKP--FKVITRKAIVAEPDEVERNSRARS 292 Query: 309 AKLRAGMR 316 AKLR G + Sbjct: 293 AKLRIGEK 300 >gi|288929756|ref|ZP_06423599.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317 str. F0108] gi|288328857|gb|EFC67445.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317 str. F0108] Length = 319 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 17/320 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 + I G HVPVLL + + LN G V +D TFG GG++R + + + D+ Sbjct: 3 NDNIITAQGYHVPVLLAESVEALNIVEGGVYVDVTFGGGGHTRHILSKMDGTARLFSFDQ 62 Query: 67 DPFAVSCGQETMRD------YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQ 117 D A + D E+F+ ++ F L +++ GVD ++ DLGVSS Sbjct: 63 DADAEENTRRKSPDGQQPLANDERFTFVRSNFRYLDNWMRYYGVDHVDGILADLGVSSHH 122 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFSF+ PLDMRM+ + +A+ V+N + + L + + GE +Q+ RIA AI Sbjct: 123 FDDQERGFSFRFDAPLDMRMNKNAALTAAQVLNTYDEERLADVFFLYGEIRQSRRIASAI 182 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 VK R A QTTQ +++++ +F + + FQALRI VNNE+ L + L++A Sbjct: 183 VKARAKAAVQTTQQFAAIVEP--FFKREREKKEMAKLFQALRIEVNNEMNALKEMLQAAA 240 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L GG L V+++HSLEDR+VK F + + + + P F + KV+VPT Sbjct: 241 QWLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPT 298 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++ N RSRSAKLR + Sbjct: 299 DDEQLRNPRSRSAKLRIAEK 318 >gi|255282562|ref|ZP_05347117.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM 14469] gi|255266855|gb|EET60060.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM 14469] Length = 312 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 170/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + I LN P + +D T G GG+S C+ ++ +D+D A++ Sbjct: 1 MEFKHTSVLLGETIDALNINPDGIYVDGTLGGGGHSYEICRRLSGRGRLVGIDQDAAAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++K++ ++ ++ + ++++ + G DG++ DLGVSS Q+D DRGF++++ Sbjct: 61 AASERLGEFKDKVTIIRSNYCEMRERLAGIGVTGADGIILDLGVSSYQLDTADRGFTYRE 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A D+VN + +L RI+ GE++ A IA IV+ R+ P +TT Sbjct: 121 DAPLDMRMDQRQTRTAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVQAREEKPLETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA ++FQA+RI +NNE+ L+ L + L G + + Sbjct: 181 GELIHVIKAAIPMKVRAVGGHPAKKTFQAIRIELNNELGVLSDSLDDMIELLNNKGRICI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + +T+K ++P +E++ N RS Sbjct: 241 ITFHSLEDRIVKNAFRKNENPCICPKEFPVCVCGRKPKGRVLTRKPILPGEEEMKENSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRVFER 310 >gi|325202777|gb|ADY98231.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240149] Length = 316 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A P I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|317504120|ref|ZP_07962122.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella salivae DSM 15606] gi|315664792|gb|EFV04457.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella salivae DSM 15606] Length = 316 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 109/319 (34%), Positives = 168/319 (52%), Gaps = 17/319 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I HVPVLL++ + LN G V +D TFG GG+S +++ + D+D Sbjct: 2 IKKAETYHVPVLLKESVDGLNIQSGGVYVDVTFGGGGHSSEILSRLDEQAHLYSFDQDAD 61 Query: 70 AVSC------GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120 A G E +F+ ++ F L++++ +DG++ DLGVSS D Sbjct: 62 AEQNVMRSEVGAERRFVDDSRFTFVRSNFRYLKNWMRYYGVESIDGLLADLGVSSHHFDD 121 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSF+ LDMRM+ G +A+D+VN + + L + + GE KQ+ R+A A+VK Sbjct: 122 ESRGFSFRFDAQLDMRMNKRAGKTAADIVNDYDEEALANLFYLYGEIKQSRRLAAAVVKA 181 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R TTQDL +++ + + + FQALRI VN+E++ L + L+SA + L Sbjct: 182 RSQQHIATTQDLLGILEPIFKREREKK--DLAKVFQALRIEVNHEMDALKEMLKSATELL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG L V+++HSLEDR+VK + + + ++ P F I KV+VP++ + Sbjct: 240 KPGGRLSVITYHSLEDRIVKNIMKTGNVEGKRIQDFYGRIETP--FTLINNKVIVPSENE 297 Query: 300 VAFNRRSRSAKLRAGMRTV 318 N RSRSAKLR + Sbjct: 298 QQENPRSRSAKLRIAEKNE 316 >gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 329 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 142/327 (43%), Positives = 196/327 (59%), Gaps = 17/327 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS+ + H+PVLLE+V+A L+P PG +I+DATFGAGGY+R G+ V A DRDP Sbjct: 1 MSAE-TGSRAPHIPVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGATVHAFDRDP 59 Query: 69 FAVSCGQETMRDYK--EQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A++ G+ + L FS++ + GV GVVFD+GVSSMQ+D R Sbjct: 60 DAIAAGKLWGETCGKEPRLVLHPRRFSEIAEGLAEAGIAGVQGVVFDIGVSSMQLDQAAR 119 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GF+F GPLDMRMS G SA+D +N+A+ ++ +L GEE+Q+ RIA AIV R Sbjct: 120 GFAFSSDGPLDMRMSQEGPSAADFLNEADEGEIADVLYRYGEERQSRRIARAIVAAR--- 176 Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P TT +++++K + + + + PATRSFQA+RI VN E++EL QGL +AEK Sbjct: 177 PLTTTAQFAAVVRKALGYRPDIKGPKAPKDPATRSFQAVRIHVNGELDELVQGLAAAEKV 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPT 296 L GG + VVSFHSLEDR+VK+F +G V A +P AVF+ + + PT Sbjct: 237 LVPGGRIAVVSFHSLEDRIVKQFLREGAGAVPAGSRHLPQLESKVQAVFEKPSG-AIRPT 295 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIE 323 E+ A N R+RSA LR +RT + Sbjct: 296 PEEEARNPRARSATLRCAVRTAAPARA 322 >gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1] gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1] Length = 295 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 121/307 (39%), Positives = 179/307 (58%), Gaps = 26/307 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H PVLL++ + +L G V +DAT G GG++ + K VIA+DRD A+ E Sbjct: 5 YHPPVLLKESLKVLKAEEGGVFVDATLGGGGHTEAILKAHPENRVIAIDRDEEAIERAME 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ Y ++ S++ A FSQ+ + + V GV+FDLGVS + +RGF+ K PL Sbjct: 65 RLKPYGDRVSIYHANFSQIDRVLQMEGVERVKGVLFDLGVSHFHLRG-ERGFTVWKEQPL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A +VVN+ + ++L RI+ GEEK A +IA IVKRR+ P +TT +L+ Sbjct: 124 DMRMDRSQKLTAKEVVNELSERELARIIFRYGEEKFARKIASEIVKRRKRKPIETTTELA 183 Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S++++ + + HPA ++FQA+RI+VN E EE+ G+ A + ++ GG L V++F Sbjct: 184 SIVEEVIPKKLWAGRKKHPAVKTFQAIRIYVNREFEEIETGIPKAAEFVEPGGRLAVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK + G F +TKK +VPT+E+V N +RSAK Sbjct: 244 HSLEDRLVKNILRNLEG-----------------FTPVTKKPIVPTEEEVVENPAARSAK 286 Query: 311 LRAGMRT 317 LRA R Sbjct: 287 LRAAERV 293 >gi|312112902|ref|YP_004010498.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC 17100] gi|311218031|gb|ADP69399.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC 17100] Length = 340 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 140/310 (45%), Positives = 198/310 (63%), Gaps = 6/310 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVLL +V+ L+P G+ +D TFGAGGY+R+ + +V+ LDRDP A++ Sbjct: 31 HIPVLLREVLEALHPGVGERFIDGTFGAGGYARAILEAAHCDVLGLDRDPTAIAGACALE 90 Query: 79 RDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + L + FS+++D +DGVV DLGVSSMQ+D +RGFSF + GPLDM Sbjct: 91 TAFAGRLKLAETPFSEMEDAAHGIGWDALDGVVLDLGVSSMQLDEAERGFSFMRDGPLDM 150 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS SG+SA+DVVN + IL GEE+++ IA AIVK R++APF+ T L++LI Sbjct: 151 RMSSSGLSAADVVNTYEKDAIADILYTFGEERRSRAIAAAIVKDRETAPFERTGQLAALI 210 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPATRSFQALR++VN+E+ EL + L +AE+ LK GG L+VVSFHSLED Sbjct: 211 ARVLGHKPGDPKHPATRSFQALRLYVNDELGELTRALEAAERLLKPGGRLVVVSFHSLED 270 Query: 256 RLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A RSGK IP ++ F+ + V P +++VA N R+RSA+LR Sbjct: 271 RIVKRFLAERSGKRAKASRYIPDAGDSTAPTFELRDRHGVEPGEDEVAANPRARSARLRW 330 Query: 314 GMRTVERSIE 323 +RT + Sbjct: 331 AVRTDAPPLA 340 >gi|332518989|ref|ZP_08395456.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4] gi|332044837|gb|EGI81030.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4] Length = 300 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 162/309 (52%), Gaps = 17/309 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 + H PVLL + + L+ P V +D TFG GG+S+ K + A D+D A+ Sbjct: 2 EMEYHNPVLLNETVDGLDIKPNGVYVDVTFGGGGHSKEILKRLGEHGKLFAFDQDADALE 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + +F+L F ++ ++ VDG++ D GVSS Q D +RGFS + Sbjct: 62 N-----KIDDPRFTLIHENFRYIKRFLRFHGVKEVDGILADFGVSSHQFDVAERGFSTRF 116 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM+ SA VVN+ + + + ++L GE + A +A IV R++ +T+ Sbjct: 117 AADLDMRMNQKNDLSAFHVVNEYDEEQIKQVLLQYGELRAAPAMARLIVDYRKNEVIKTS 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++++K + N+I + +QA+RI VN EIE L + L + LK G L ++ Sbjct: 177 DQLKTILKKFLSPKHENKI--LAQIYQAIRIEVNQEIEALKEFLSQTPEILKPNGRLSLI 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK+F + + R + P + + K+++P+ E++ N R+RS Sbjct: 235 SYHSLEDRLVKRFIRNGLFEGEPERDVFGRFEVP--LKKV-GKLIIPSAEEIKINNRARS 291 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 292 AKLRIAEKI 300 >gi|270263951|ref|ZP_06192219.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera 4Rx13] gi|270042144|gb|EFA15240.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera 4Rx13] Length = 313 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 173/312 (55%), Gaps = 15/312 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS L YV ++ +DGV+ DLGVSS Q+D +RGFSF Sbjct: 63 AAKSI---EDPRFTIVHGPFSDLSHYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM SG SAS+ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPSSGQSASEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L G L + Sbjct: 180 TKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + T K + +P+Q++VA N Sbjct: 239 ISFHSLEDRIVKRFMRHHSRGAQVPAGLPLTEEQLRGMGGRTLKALGKMMPSQDEVAENP 298 Query: 305 RSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 299 RARSSVLRIAER 310 >gi|325203518|gb|ADY98971.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240355] Length = 316 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A P I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|212697080|ref|ZP_03305208.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM 7454] gi|212675855|gb|EEB35462.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM 7454] Length = 306 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 116/305 (38%), Positives = 160/305 (52%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K +I LD+D A+ +E Sbjct: 5 HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLIGLDQDKDAIKAARE 64 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ F+ S + D K +DG + D+GVSS QID GDRGFS+ K GPLD Sbjct: 65 NLKDFSNVLFFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPLD 124 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ +A +VN ++ +L I GEE+ + IA AIV R+ TT L + Sbjct: 125 MRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLRN 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K+V N HP R FQALRI VN E+E L L L GG L V++FHSL Sbjct: 185 IVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F S K + H + I+KK ++P+++++ NRRS SAKLR Sbjct: 242 EDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKLR 301 Query: 313 AGMRT 317 R Sbjct: 302 VCERV 306 >gi|292572190|gb|ADE30105.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii Rp22] Length = 306 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 184/306 (60%), Gaps = 5/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 H+PV+L +V+A+L P + LD TFGAGGYS + +V +LDRDP + Sbjct: 1 MSQYHIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESV 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ +DY E+F+ + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA + VN A+ +++ ++ G E + RIA +IV+ R++A +T+ L+ + Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I AT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRYSI-GFRKGKIDSATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A + IT KV+ P+ +++ N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKL 299 Query: 312 RAGMRT 317 RA + Sbjct: 300 RAAKKI 305 >gi|304383929|ref|ZP_07366386.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973] gi|304335007|gb|EFM01280.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973] Length = 305 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 156/311 (50%), Gaps = 16/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 + HVPVLL + + L P V +D TFG GG+SR + A D+D Sbjct: 2 VTTAETYHVPVLLTESVDGLKIRPNGVYVDVTFGGGGHSREILARLGKGGQLYAFDQDAD 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFS 126 A ++F+ ++ F L++++ G++ + + DLGVSS D RGFS Sbjct: 62 AEQNC-----PDDDRFTFVRSNFRYLKNWIHYYGIEKIDGLLADLGVSSHHFDDETRGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ + PLDMRM+ +A+D+VN L+ + GE K A R+A AIV+ R P Sbjct: 117 FRFNAPLDMRMNKRAKTTAADIVNHYTETQLSDLFYGYGELKNARRMAAAIVRERAENPI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TTQDL+ ++ + K + R FQALRI VN E+ L + L SA + L GG L Sbjct: 177 VTTQDLTDCMRPLI--RKEHEKKDMARLFQALRIEVNQEMTALKEMLESATELLSDGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++++HSLEDR+VK + + + P Q I K VP+ ++ N R Sbjct: 235 SIITYHSLEDRMVKNLMKTGNTDGEQKKDFFGRMETP--LQPIGNKPTVPSDDEQQRNPR 292 Query: 306 SRSAKLRAGMR 316 SRSAKLR + Sbjct: 293 SRSAKLRIAEK 303 >gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str. Rustic] gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str. Rustic] Length = 307 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 127/303 (41%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 I HV V+L K++ L+P G+ LD TFGAGGYS++ + V ALDRDP + Sbjct: 1 MIQSHVSVMLNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EEIQQNYGERFDFVETNFAGSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ + Sbjct: 121 MRMSGQGLSAEEFVNAAEAKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRSSI-GFRKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K + + + IT K + P+ ++V N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAG 314 RA Sbjct: 300 RAA 302 >gi|297566101|ref|YP_003685073.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946] gi|296850550|gb|ADH63565.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946] Length = 294 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 175/307 (57%), Gaps = 24/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VL ++ + LN PG + +DAT G GG+++ + G V+ D+DP A+ + + Sbjct: 7 HISVLYDEALNYLNVKPGGLYVDATLGGGGHTQGILQRGGRVVGFDQDPAAIERARNLLL 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L +A F LQ + + VDGV+ DLGVSS D +RGFS++ GPLD Sbjct: 67 PGLSLGQLTLVEANFRDLQPKLHALGIERVDGVLADLGVSSFHFDDPERGFSYRLEGPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G +A++VVN+ V++L RIL LGEE +A RIA I + R+ P +TT +L+ + Sbjct: 127 MRMGKEGQTAAEVVNELEVEELARILRELGEEPKAWRIARFIEEARERKPIETTTELAEI 186 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ F HPA ++FQALRI+VN+E+ L + L +A L G L+V+SFHSLE Sbjct: 187 VRRATGF--RGAGHPARKTFQALRIYVNDELGALRELLEAAVNVLAPQGRLVVISFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F + + +TKK + P +E+ N R+RSAKLRA Sbjct: 245 DRIVKHFLK-----------------NEPRLRVLTKKPLEPGEEEARENPRARSAKLRAA 287 Query: 315 MRTVERS 321 R E + Sbjct: 288 ERLREAA 294 >gi|326204085|ref|ZP_08193946.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM 2782] gi|325985852|gb|EGD46687.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM 2782] Length = 313 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 162/313 (51%), Gaps = 11/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 H VLL++ I LN + +D T G G+S K +I LD+D FAV Sbjct: 1 MEFKHKSVLLDECIENLNINQDGIYVDGTIGGAGHSSEIYKRLGEKGCLIGLDQDSFAVE 60 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + Q F + F ++ + VDG++ DLGVSS Q+D RGFS+ Sbjct: 61 TSVKRLSEIESQADFKVVNTNFKNIRKACSELGIDEVDGILLDLGVSSHQLDEASRGFSY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM SA DVVN+ + +D+ RI+ GEEK +SRIA IV+ R + P + Sbjct: 121 QHDAPLDMRMDTKSDLSAYDVVNKYSEQDIYRIIRDYGEEKWSSRIAKFIVEARSNKPVE 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ V S + + HPA R+FQA+RI VNNE+ L + + LK G L Sbjct: 181 TTYELVDIIKRAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKGEGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + +K +V ++ N Sbjct: 241 CIITFHSLEDRIVKLQFNKMVNPCTCPTSFPVCVCGKKPRAKLVNRKPIVSGVSELEENP 300 Query: 305 RSRSAKLRAGMRT 317 R+RSAKLR + Sbjct: 301 RARSAKLRVLQKI 313 >gi|71909118|ref|YP_286705.1| methyltransferase [Dechloromonas aromatica RCB] gi|88909196|sp|Q47A96|RSMH_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71848739|gb|AAZ48235.1| methyltransferase [Dechloromonas aromatica RCB] Length = 308 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 HV VLLE+ + L V +DATFG GG+SR ++A+DRDP A++ G E Sbjct: 7 HVTVLLEEAVGALAIKADGVYVDATFGRGGHSRRILSELNQNGRLVAVDRDPQAIAAGAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ D + VDGV+FD+GVSS QID G+RGFSF+ PLDMR Sbjct: 67 IDDSRFLLVHRAFGELAEAADEAGIRDVDGVLFDVGVSSPQIDDGERGFSFRYDAPLDMR 126 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G +A++ + +A ++D+T ++ GEE+ A +IA +V R P TT ++L+ Sbjct: 127 MDTTQGETAAEWLARAEIRDITEVIRNYGEERFAFQIAKKVVAARLEQPIVTTGQFAALV 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++TV + + PATRSFQALRI +N E+ +L L A + LK GG L+V+SFHSLED Sbjct: 187 RETVRTREPGQ-DPATRSFQALRIHINQELRQLEVALPQALELLKPGGRLVVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F +S + + + + + + P+ ++ N R+RSA +R Sbjct: 246 RIVKNFMRDQSIADAMPKSLPLRADQLPKPKLRLVGRPIKPSAAEIDANPRARSAVMRIA 305 Query: 315 MR 316 + Sbjct: 306 EK 307 >gi|156935398|ref|YP_001439314.1| S-adenosyl-methyltransferase MraW [Cronobacter sakazakii ATCC BAA-894] gi|263447014|sp|A7MIE1|RSMH_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156533652|gb|ABU78478.1| hypothetical protein ESA_03256 [Cronobacter sakazakii ATCC BAA-894] Length = 313 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 15/315 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQ--- 59 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 60 AIAAAAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+ A + L GG L V Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVEVLAPGGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNR 304 +SFHSLEDRLVK+F +S + + A + ++P + +VA N Sbjct: 239 ISFHSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRELRALGKLMPGEAEVAENP 298 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR RT Sbjct: 299 RARSSVLRVAERTGA 313 >gi|15604423|ref|NP_220941.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii str. Madrid E] gi|8134811|sp|Q9ZCY2|RSMH_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3861117|emb|CAA15017.1| unknown [Rickettsia prowazekii] Length = 306 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 5/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 H+PV+L +V+A+L P + LD TFGAGGYS + +V +LDRDP + Sbjct: 1 MSQYHIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESV 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ +DY E+F+ + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA + VN A+ +++ ++ G E + RIA +IV+ R++A +T+ L+ + Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I AT++FQA+RI++NNE+EEL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRYSI-GFRKGKIDSATKTFQAIRIYINNELEELEQFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A + IT KV+ P+ +++ N R+RSAKL Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKL 299 Query: 312 RAGMRT 317 RA + Sbjct: 300 RAAKKI 305 >gi|220904376|ref|YP_002479688.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|263447319|sp|B8IZT3|RSMH_DESDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219868675|gb|ACL49010.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 327 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 118/326 (36%), Positives = 168/326 (51%), Gaps = 12/326 (3%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIA 63 +TMS T HV VL + +A L+P G LD T G GG++ + + Sbjct: 2 IQTMSDTTEPT--RHVSVLPVETLAALDPRAGGRYLDGTLGMGGHASAILSSAPGIELCG 59 Query: 64 LDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 LDRD A++ + + + F + F++ + + VDG + D+GVSS+Q+D Sbjct: 60 LDRDEEALALAGQRLSSFGGRAHLFHCRYSDFAEALNELGWDKVDGALLDIGVSSLQLDE 119 Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM + SA VN+ + L + LGEE QA RIA AIV Sbjct: 120 AERGFSFYGDGPLDMRMDQNSAQPSAWHWVNRESFDKLKDCIATLGEEPQAGRIARAIVD 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 RQ TT L++L+++ + + HPATR+FQALR+ VN+E+ EL + L Sbjct: 180 ARQKNTIDTTGQLAALVERAYPAAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 239 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVP 295 L GG L V++FHSLEDR+VK+ RH+ H + + KK V Sbjct: 240 TWLPIGGRLAVITFHSLEDRMVKQAMRHWVEGCRCPRHIPRCICGHQPEVRILHKKPVQA 299 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 E++A N R+ SAKLRA + E S Sbjct: 300 GPEELAANSRAGSAKLRAVEKIAEDS 325 >gi|157368998|ref|YP_001476987.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568] gi|262826478|sp|A8G9R9|RSMH_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157320762|gb|ABV39859.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568] Length = 313 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 170/312 (54%), Gaps = 15/312 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENYKHTTVLLDEAVNGLNIRSNGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 AAKSI---EDPRFSIVHGPFSDLSHYVRERELVGQIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM SG SAS+ + +A D+ +L GEE+ A RIA AIV+R Q P Sbjct: 120 RDGPLDMRMDSSSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNQVDPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V Sbjct: 180 TKQLADLIANA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + A T K + +P +VA N Sbjct: 239 ISFHSLEDRIVKRFMRHHSRGAQVPAGIPLTEAQLRSMGGRTLKALGKMMPGDAEVAENP 298 Query: 305 RSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 299 RARSSVLRIAER 310 >gi|227486691|ref|ZP_03917007.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus lactolyticus ATCC 51172] gi|227235279|gb|EEI85294.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus lactolyticus ATCC 51172] Length = 309 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 161/313 (51%), Gaps = 12/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 +++ +H PVL + I LN P + D T G GG+S+ + +I +D+D Sbjct: 1 MNNMKFEHTPVLYRECIENLNIKPDGIYADLTLGKGGHSKLILEKLSAKGLLIGIDQDKA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFS 126 A+ E ++DY + F F + + + G + + + D+GVSS QID +RGFS Sbjct: 61 AIEAASENLKDYDNKV-FFNTNFENIGKVLTEAGFNKIDGALMDIGVSSYQIDNPERGFS 119 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM+ +A +VN+ + +LTRI GEE+ + IA IVK R + Sbjct: 120 YIHDGPLDMRMNRQNELTAEKIVNECSQDELTRIFFDYGEERFSKAIAKNIVKARANERI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +++ K+ + +HP R FQALRI VN E++ L + + + + G L Sbjct: 180 NTTFKLRNIVMKSA---RFTEVHPEKRVFQALRIEVNRELDVLTKAIDTIIDFIDKDGRL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + H A + ITKK + +++ N Sbjct: 237 AIITFHSLEDRIVKNKFKDLATGCICPPEIPVCVCNHVAKVKIITKKPITAKADELRENS 296 Query: 305 RSRSAKLRAGMRT 317 RS+ AKLR R Sbjct: 297 RSKPAKLRVCQRI 309 >gi|77460902|ref|YP_350409.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf0-1] gi|88909213|sp|Q3K736|RSMH_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77384905|gb|ABA76418.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 315 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR +I D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPDGRLIGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ +F + Q +F++L V ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 -TLAAEDGRFVVVQRSFAELGSVVAERGLTGKVSGILLDLGVSSPQLDDAERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM GISA++ VN A V+++ R+ GEE+ + R+A A+V+RR PF+ T D Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDVTPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A + L+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIQVNNELGDLEAGLEAALECLEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F R++ + + K + ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVRHVAFEPKIKVHGKAQTASDAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|86140630|ref|ZP_01059189.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85832572|gb|EAQ51021.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL++ + L P V +D TFG GG+SR K + A D+D A+ Sbjct: 1 MDYHNPVLLKETVDGLAIKPDGVYVDVTFGGGGHSREILKRLGDQGKLFAFDQDKDALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + F++ + VDG++ D GVSS Q D +RGFS + Sbjct: 61 A---LDDPRFTLINENFRFAKRFLRFYGAAKVDGILGDFGVSSHQFDVAERGFSTRFDAK 117 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA VVN+ + +DL R+L GE + A ++A +V R+ +TT+DL Sbjct: 118 LDMRMNQDDKLSAYHVVNEYSEEDLGRVLLQYGELRSAPKLARTLVSVRKDKAIETTEDL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +Q + + ++ + +QA+RI VN E+E L + L+ E+ LK GG L ++S+H Sbjct: 178 KQALQSYLPKGREHK--LLAQIYQAIRIEVNQELEVLKEFLQQTEEMLKPGGRLSLISYH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK++ + + + + + P F+ + ++VP++E++ N R+RSAKL Sbjct: 236 SLEDRLVKRYMRNGLFEGEPEKDIFGNFTVP--FKKV-GGLIVPSKEEIKQNNRARSAKL 292 Query: 312 RAGMR 316 R + Sbjct: 293 RVAEK 297 >gi|317050381|ref|YP_004111497.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5] gi|316945465|gb|ADU64941.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5] Length = 316 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 123/324 (37%), Positives = 186/324 (57%), Gaps = 21/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIA 63 MS+ H H+PVL + V++ L PA +++D T G GG+S + +I Sbjct: 1 MSTTFH-----HIPVLADAVLSSLGPALNAEQPLLVDCTVGGGGHSSLILEHCPSVRIIG 55 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQI 118 +D+DP A+ + + E+F+ + F+QL + V +G ++DLGVSS Q+ Sbjct: 56 IDQDPAALQACSDRL---GERFTPLRGNFAQLHRLLKQANVAPSSVNGFLYDLGVSSHQL 112 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF GPLDMRM S +SA+DVVN + ++L RI+ GEE+ + R+A I Sbjct: 113 DTPERGFSFLSDGPLDMRMDPSAPLSAADVVNTYSEEELARIIHAYGEERHSRRVARVIA 172 Query: 178 KRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R+ PF TT++L+ LI + + F +N IHPATR+FQALRI VN E++ + L SA Sbjct: 173 ACRREKPFTTTKELADLIHRDIAKFYRNESIHPATRTFQALRIEVNGELDAITTSLESAL 232 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVP 295 L+ GG+L V+SFHSLEDR++K+FF + + + H + + +T+K ++ Sbjct: 233 TYLRPGGILAVISFHSLEDRIIKQFFRQHASTCICPPEVWQCRCQHQPLLEILTRKPLIA 292 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319 + + N RSRSAKLR RT Sbjct: 293 DEAEKQLNPRSRSAKLRVARRTSA 316 >gi|313203980|ref|YP_004042637.1| s-adenosyL-methyltransferase mraw [Paludibacter propionicigenes WB4] gi|312443296|gb|ADQ79652.1| S-adenosyl-methyltransferase MraW [Paludibacter propionicigenes WB4] Length = 319 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 163/322 (50%), Gaps = 16/322 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ K+ +S++ I H+P LL++ I LN P V +D TFG GG+SR K Sbjct: 3 IKKKNIDAVSTSGAEEIAYHIPALLDETITGLNIKPNGVYVDVTFGGGGHSREILKHLGA 62 Query: 59 -SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVS 114 ++ D+D A+ + +F ++ F +++ Y VDG++ DLGVS Sbjct: 63 DGKLLGFDQDEDAIKNTID-----DPRFIFVRSNFRYMKNFLKYHGIDKVDGILADLGVS 117 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S D +RGFSF+ G LDMRM+ +A+ ++N + L + + GE + +IA Sbjct: 118 SHHFDEAERGFSFRFDGALDMRMNTKSSFTAAALLNTYTEEQLADVFYLYGELHNSRKIA 177 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R SAPF +++ +F + R FQALRI VN E++ L L Sbjct: 178 RTIVAARNSAPFDRIFPFIEVLKP--FFGREKEKKDMARVFQALRIEVNKEMDVLKALLD 235 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + + L G L V+++HSLEDRLVK F S + + + + P +++ KV+ Sbjct: 236 QSIEVLNPQGRLAVLTYHSLEDRLVKNFIRSGNFEGKLEKDFYGNILAP--LKAVNTKVI 293 Query: 294 VPTQEDVAFNRRSRSAKLRAGM 315 V + +VA N R+RSAKLR Sbjct: 294 VADEAEVARNPRARSAKLRVAE 315 >gi|325198906|gb|ADY94362.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis G2136] Length = 316 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 163/303 (53%), Gaps = 10/303 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNV-RTRERGQDPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVF-QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTV 318 RT Sbjct: 299 RTA 301 >gi|312866364|ref|ZP_07726582.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415] gi|311098058|gb|EFQ56284.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415] Length = 316 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L P P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVSVLLHETVDMLAPKPDGIYVDATLGGAGHSAYLLSKLGPKGHLYCFDQDQSAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY + + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 KLKDYVDRGMVTFIKDNFRNLKADLAEEGVTQIDGILYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA DVVN + +DL +I GE+K + +IA I + R+S P +TT + Sbjct: 127 PLDMRMNQEADLSAYDVVNTYSYQDLVKIFFKYGEDKFSKQIARKIEQARKSKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LTEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQALELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + +K ++P+Q +++ N R+ SA Sbjct: 247 FHSLEDRLTKQIFKEASSVDVPKGLPFIPEEMQPKIALVNRKPILPSQGELSVNNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|90580220|ref|ZP_01236027.1| S-adenosyl-methyltransferase [Vibrio angustum S14] gi|90438522|gb|EAS63706.1| S-adenosyl-methyltransferase [Vibrio angustum S14] Length = 315 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFEHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q+ +F + FS ++ Y+ ++ VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQKI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA IV+ R++ + Sbjct: 119 MRDGPLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKE 178 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + V K+ HPATRSFQA+RI++N+E++E+ L A L G Sbjct: 179 PLTRTRELASLIAAVSPFKDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F +S + + K + P+Q+++ Sbjct: 239 LSVISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTLGKAIKPSQDEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 +N R+RS+ LR R Sbjct: 299 GYNTRARSSVLRLAER 314 >gi|288801599|ref|ZP_06407041.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18] gi|288335641|gb|EFC74074.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18] Length = 314 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 171/317 (53%), Gaps = 13/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 I H+PVLL + I LN V +D TFG GG+SR GS++ + D+D Sbjct: 2 IKTAECYHIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEGSHLYSFDQDAD 61 Query: 70 AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRG 124 A + ++F+ ++ F L++++ GV+ + + DLGVSS D RG Sbjct: 62 AEQNIDNMGLSEEQVDRFTFVRSNFRYLKNWMQYYGVEYIDGLLADLGVSSHHFDDETRG 121 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ GI+A+D++N + + L IL + GE KQ+ RIA AIVK R Sbjct: 122 FSFRFEAPLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQK 181 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++TT DL + I+ +++ + + FQALRI VN+E++ L + L +A + L+ GG Sbjct: 182 TYKTTNDLLTTIEPFFQWAREKK--DMAKMFQALRIEVNHEMDALKEMLMAATELLRPGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK S + + + P F+ + KV+ + ++ N Sbjct: 240 RLSVITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRTETP--FRLVNNKVITASNDEQERN 297 Query: 304 RRSRSAKLRAGMRTVER 320 RSRSAKLR + Sbjct: 298 PRSRSAKLRIAEKKANE 314 >gi|292669650|ref|ZP_06603076.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Selenomonas noxia ATCC 43541] gi|292648447|gb|EFF66419.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Selenomonas noxia ATCC 43541] Length = 310 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 159/306 (51%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HV VL E+ + LN P +D T G G++ +I +D+D A++ QE Sbjct: 5 HVSVLPEETLNALNITPNGTYVDCTLGGAGHAGRIAARLSPEGRLIGIDQDEAAIAAAQE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D Q +L + F L + DGV+FDLG+SS QID +RGFS+ + PL Sbjct: 65 RLADAACQVTLVRDNFRNLSAILAGAGVDSTDGVLFDLGISSPQIDTAERGFSYMQDAPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA VVN+ +L I GEE+ A RIA I + R++ P +TT L Sbjct: 125 DMRMDRRAGRSARSVVNEYTAAELMEIFYNYGEERWAKRIAAFIEEERKAHPIETTGQLV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I + V + HPA R FQA+RI VN E+ L L +A +AL+ GG L V++FH Sbjct: 185 AVIDRAVPKKTRAKGGHPAKRVFQAIRIEVNEELTILEGALTAAVRALRPGGRLAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VKK + + H + H + I K + + + A N R++SAK Sbjct: 245 SLEDRIVKKTLKRFAQGCICPPHTPVCVCGHTPELRLI-GKPQMASAVECAENPRAKSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRTAEK 309 >gi|52841149|ref|YP_094948.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628260|gb|AAU27001.1| S-adenosylmethyl transferase MraW [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 334 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 167/312 (53%), Gaps = 12/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 26 EMAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQ 85 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ ++F +F +F+Q++++ VDG++ DLGVSS Q+D +RGFSF Sbjct: 86 YAKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFM 144 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P T Sbjct: 145 LQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITT 204 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L GG L V Sbjct: 205 TLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAV 263 Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+F + G V I F+ + K V P ++ N RS Sbjct: 264 ISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRS 322 Query: 307 RSAKLRAGMRTV 318 RSA LR G + Sbjct: 323 RSAVLRIGEKLA 334 >gi|296329280|ref|ZP_06871781.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153636|gb|EFG94453.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 314 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIVYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D +RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKATELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEVITKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|28199742|ref|NP_780056.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa Temecula1] gi|28057863|gb|AAO29705.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 322 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 10/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M H HVPVL + + L LD TFG GG++R + G ++ +D Sbjct: 1 MDGLAPHLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A++ E + + +F+ L + +DGV+FDLGVSS Q+D +RGF Sbjct: 61 KDPEAIAMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K GPLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P Sbjct: 120 SFAKDGPLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQP 179 Query: 185 FQTTQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ Sbjct: 180 LLRTVQLAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALR 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+V+SFHSLEDR+VK+F + S R + + + I + + ++++ Sbjct: 240 PGGRLVVISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSA LR + Sbjct: 299 EVNPRARSAVLRVAEK 314 >gi|42561121|ref|NP_975572.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|115311585|sp|P62473|RSMH_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42492618|emb|CAE77214.1| MraW methylase family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320523|gb|ADK69166.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 308 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ Sbjct: 1 MDKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQ 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + F L Q FS L VDG+++DLGVSS QID RGFS++ Sbjct: 61 AKEKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + +A V+N + ++ IL GEE + I+ IV+ R T + Sbjct: 121 GPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR--PINSTLE 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + + + HPA ++FQALRI++NNE+ L L+ A L + + V++ Sbjct: 179 LVEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVIT 238 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLE+++VK F + + + + ++ + F+ + KK + P+ ++ N RS Sbjct: 239 FHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHRSH 298 Query: 308 SAKLRAGMR 316 SAKL + Sbjct: 299 SAKLWVIEK 307 >gi|325478632|gb|EGC81744.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii ACS-065-V-Col13] Length = 306 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H+PV+ + I LN V LD T G GG+S+ + +IALD+D A+ Sbjct: 1 MKFEHIPVIATETIENLNIKSDGVYLDLTLGKGGHSKMILERLSDEGTLIALDQDKEAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129 +E ++D+ + F ++ + + D G D + + D+GVSS QID DRGFS+ K Sbjct: 61 AAKENLKDFSN-VIFINSNFEKIDEVLRDLGFDYIDGALMDIGVSSYQIDNADRGFSYMK 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +A +VN+ + +L +I GEEK + IA I+K R+ TT Sbjct: 120 DGPLDMRMNQENELTAEIIVNEYSQDELEKIFFEYGEEKFSKLIAKNIIKAREDYRIDTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++ K++ K+N HP R FQALRI VN E++ L + L L ++ Sbjct: 180 FKLKDIVTKSI---KSNEAHPEKRVFQALRIEVNRELDVLKDTIDKVVDHLNKDERLAII 236 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + H A + IT+K + +++++ N R++ Sbjct: 237 TFHSLEDRIVKNKFKDLATDCICPPEFPVCVCNHKAKVKIITRKPITASKKELKENSRAK 296 Query: 308 SAKLRAGMRT 317 AKLR R Sbjct: 297 PAKLRVCQRI 306 >gi|325847850|ref|ZP_08170072.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480868|gb|EGC83921.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 306 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 160/305 (52%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K ++ LD+D A+ +E Sbjct: 5 HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLVGLDQDKDAIKAAKE 64 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ F+ S + D K +DG + D+GVSS QID GDRGFS+ K GPLD Sbjct: 65 NLKDFSNVLYFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPLD 124 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ +A +VN ++ +L I GEE+ + IA AIV R+ TT L + Sbjct: 125 MRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLRN 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K+V N HP R FQALRI VN E+E L L L GG L V++FHSL Sbjct: 185 IVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F S K + H + I+KK ++P+++++ NRRS SAKLR Sbjct: 242 EDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKLR 301 Query: 313 AGMRT 317 R Sbjct: 302 VCERV 306 >gi|227499845|ref|ZP_03929938.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus tetradius ATCC 35098] gi|227217954|gb|EEI83227.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus tetradius ATCC 35098] Length = 309 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 108/313 (34%), Positives = 170/313 (54%), Gaps = 12/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 +++ +H+PVL I LN V +D T G GG+S+ + +IA+D+D Sbjct: 1 MNNMKFEHIPVLATDTIKNLNIKKDGVYVDLTLGKGGHSKMILENLSDKGRLIAIDQDKE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ +E ++D+ + + F + ++ + + +DG + D+GVSS QID +RGFS Sbjct: 61 AIEAAKENLKDFSN-VTFINSNFEKFEEVLANLGLDLIDGALMDIGVSSYQIDNAERGFS 119 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + K GPLDMRM+ +A VVN+ + +L RI GEE+ + +A I+K+R Sbjct: 120 YMKDGPLDMRMNQDNELTAEIVVNEYSQDELERIFFEYGEERFSKSVARNIIKQRSEGRI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T L +I+K++ K+N HP R FQALRI VN E+E L + + LK GG + Sbjct: 180 DSTIKLRDIIRKSI---KSNETHPEKRVFQALRIEVNRELEVLENTIETVVDHLKVGGRI 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++SFHSLEDR+VK F + + + H A + IT+K + T +++ N Sbjct: 237 AIISFHSLEDRIVKNKFKDLATSCICPPELPVCVCNHKAKIKVITRKPITATMKELKMNS 296 Query: 305 RSRSAKLRAGMRT 317 RS+ AKLR G R Sbjct: 297 RSKPAKLRVGERI 309 >gi|331703577|ref|YP_004400264.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802132|emb|CBW54286.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 308 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ Sbjct: 1 MDKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKRLNQKGFLYAIDQDQIAIDQ 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + F L Q FS L VDG+++DLGVSS QID RGFS++ Sbjct: 61 AKEKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + +A V+N + ++ IL GEE + I+ IV+ R T + Sbjct: 121 GPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR--PINSTLE 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + + + HPA ++FQALRI++NNE+ L L+ A L + + V++ Sbjct: 179 LVEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVIT 238 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLE+++VK F + + + + ++ + F+ + KK + P+ ++ N RS Sbjct: 239 FHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHRSH 298 Query: 308 SAKLRAGMR 316 SAKL + Sbjct: 299 SAKLWVIEK 307 >gi|54293889|ref|YP_126304.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens] gi|54296934|ref|YP_123303.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila str. Paris] gi|68565457|sp|Q5WXZ4|RSMH_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565459|sp|Q5X6J0|RSMH_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565463|sp|Q5ZX19|RSMH_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53750719|emb|CAH12126.1| hypothetical protein lpp0975 [Legionella pneumophila str. Paris] gi|53753721|emb|CAH15179.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens] Length = 308 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++F +F +F+Q++++ VDG++ DLGVSS Q+D +RGFSF Sbjct: 61 AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P TT Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L GG L V+ Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + G V I F+ + K V P ++ N RSR Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRSR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|167745322|ref|ZP_02417449.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662] gi|167655043|gb|EDR99172.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662] Length = 311 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 99/307 (32%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H VLL++ I L P + +D T G GG++ I +D+D A+ Sbjct: 4 EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++++ ++ + + + + D VDG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA D+VN + ++L I+ GE+K A IA I R+ AP +TT L Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKAPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI N E+E L L + L G L +++F Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + + + IT+K ++PT+E++ N+R++S+ Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|238760089|ref|ZP_04621239.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia aldovae ATCC 35236] gi|238701708|gb|EEP94275.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia aldovae ATCC 35236] Length = 320 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 171/313 (54%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIDAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV + +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDSRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA+D + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMRTV 318 +RS+ LR R Sbjct: 307 ARSSVLRFAERIN 319 >gi|124003786|ref|ZP_01688634.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134] gi|123990841|gb|EAY30308.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134] Length = 303 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 14/308 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PV+L++ I L P V +D TFG GG+S++ + + A D+D A Sbjct: 1 MSKYHQPVMLKECIEGLAINPDGVYVDVTFGGGGHSKAILEQLSEKGKLYAFDQDADAKQ 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E F L +A F L+ Y+ VDG++ DLG+SS QID +RGFS + Sbjct: 61 EAKEI---DHPGFYLIRANFRYLKKYLKMYGVSKVDGILADLGISSHQIDTPERGFSTRF 117 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRMS S ++A DVVN+ + +L +ILG+ GE K A +A IV+ RQ A T Sbjct: 118 DAYLDMRMSESIEVTAQDVVNEYSESELHKILGMYGELKNAKTVASTIVRARQDAAINTV 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++L S +++ + + + FQALRI VN EI+ L L A + LK G L+V+ Sbjct: 178 EELKSAVKRHAPRGREFK--FFAQVFQALRIEVNEEIQVLEVMLEQAAEVLKPQGRLVVM 235 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR VK + + A + M + P ++I +K++ +E++A N R+RS Sbjct: 236 SYHSLEDRPVKNYIQKGRFRGEAEKDMFGNVLKP--LRAINRKIITAQEEEIALNNRARS 293 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 294 AKLRIAEK 301 >gi|325269666|ref|ZP_08136279.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella multiformis DSM 16608] gi|324988034|gb|EGC20004.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella multiformis DSM 16608] Length = 314 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 13/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 I HVPVLL++ I LN G + +D TFG GG+SR GS++ + D+D Sbjct: 2 IRTAEAYHVPVLLDESIEGLNLHRGGIYVDVTFGGGGHSREILSRLDGGSHLYSFDQDAD 61 Query: 70 AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRG 124 A + +F+ ++ F L++++ +DG++ DLGVSS D RG Sbjct: 62 AEQNTGRMGLSGEQVSRFTFVRSNFRYLKNWMRYYGVDKIDGLLADLGVSSHHFDDETRG 121 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ G +A+D++N+ + L I + GE KQ+ RIA AIVK R Sbjct: 122 FSFRFEAPLDMRMNKRAGQTAADILNEYDEGRLADIFYLYGELKQSRRIAAAIVKARGQQ 181 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 PF+TT DL + + +F + R FQALRI VN+E++ L + L +A + LK GG Sbjct: 182 PFKTTHDLLAAAEP--FFPRAREKKDLARMFQALRIEVNHEMDALREMLLAATELLKPGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK S + + + P F+ + KV+ T ++ N Sbjct: 240 RLSVITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITATDDEQERN 297 Query: 304 RRSRSAKLRAGMRTVER 320 RSRSAKLR + Sbjct: 298 PRSRSAKLRIAEKKANE 314 >gi|330501916|ref|YP_004378785.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01] gi|328916202|gb|AEB57033.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01] Length = 315 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 176/315 (55%), Gaps = 13/315 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + T+ H+ VLL++ + L +D TFG GG+SR + G ++ D+DP Sbjct: 2 TMTDTL-RHITVLLDEAVEGLAVRADGCYMDGTFGRGGHSRLILQKLGPGGRLLGFDKDP 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRG 124 A++ G+ + +F + Q +F++L D V G++ DLGVSS Q+D +RG Sbjct: 61 LAIATGEA-LAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGILLDLGVSSPQLDDPERG 119 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF GPLDMRM+ G+SA+D + A+ ++ R++ GEE+ A R+A A+V+RR Sbjct: 120 FSFLNDGPLDMRMNPHAGVSAADWIATADEDEIARVMKDYGEERFAKRMARAVVQRRAER 179 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 PF T DL+ ++ + + + +PATR+FQ +RI VNNE+ +L +GL +A + L+ GG Sbjct: 180 PFTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIHVNNELGDLERGLEAALETLEVGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 L+V+SFHSLEDR+VK+F ++ R + + K V + ++ Sbjct: 239 RLVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLIGKPVYAAEAELK 298 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA +R + Sbjct: 299 ANPRSRSAVMRIAEK 313 >gi|227535245|ref|ZP_03965294.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187129|gb|EEI67196.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 313 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 155/312 (49%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L P +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Q +L F L D + VDG+++DLGVSS Q D RGFS++ Sbjct: 62 VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ DL RI GEE + +IA I + R P TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F S R + A ++ + +K ++P++E++ N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPNYRLVNRKPILPSEEELTVNHRAH 301 Query: 308 SAKLRAGMRTVE 319 SAKLR + + Sbjct: 302 SAKLRVIEKIHD 313 >gi|218886065|ref|YP_002435386.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|263446322|sp|B8DP86|RSMH_DESVM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218757019|gb|ACL07918.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 361 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 122/311 (39%), Positives = 169/311 (54%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++V+ L P PG LD T G GG+S + + + LDRD A+ ++ Sbjct: 26 HVPVLLDEVLEALAPRPGGRYLDGTVGLGGHSAAIMERIGPDGELCCLDRDTTALGLARQ 85 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + F ++ + D + VDG + D+GVSSMQID DRGFSF GPL Sbjct: 86 RLAPWGGRVHFFHTRYADFEAALDQLGWDKVDGALIDIGVSSMQIDMADRGFSFHADGPL 145 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G AS +VN+A V L I+ GE+ A RIA AIV R + P +TT L Sbjct: 146 DMRMDRDGDEAPASRLVNRATVDVLKDIILRYGEDPMAGRIARAIVDARAAGPIETTAQL 205 Query: 192 SSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++++ + +R HPATR+FQALR+ VN+E+ +L + L L GG L V++ Sbjct: 206 AAIVDRAYPAKWRATSRNHPATRTFQALRMAVNDELGQLERFLDRILDRLNPGGRLAVIT 265 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK S + R + H A +T+K V T ++A N R+ S Sbjct: 266 FHSLEDRIVKHRLRDESQGCVCPRSVSRCECGHKARVDVLTRKPVTATDAELARNSRASS 325 Query: 309 AKLRAGMRTVE 319 AKLRA R E Sbjct: 326 AKLRAAQRLAE 336 >gi|256384076|gb|ACU78646.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri str. GM12] gi|256384908|gb|ACU79477.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri str. GM12] gi|296455289|gb|ADH21524.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 308 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ Sbjct: 1 MDKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQ 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + F L Q FS L VDG+++DLGVSS QID RGFS++ Sbjct: 61 AKEKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + +A V+N + ++ IL GEE + I+ IV+ R T + Sbjct: 121 GPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR--PINSTLE 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + + + HPA ++FQALRI++NNE+ L L+ A L + + V++ Sbjct: 179 LVEIIKSVLPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVIT 238 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLE+++VK F + + + + ++ + F+ + KK + P+ ++ N RS Sbjct: 239 FHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKANLNSKFKLVIKKPIKPSLLELEQNHRSH 298 Query: 308 SAKLRAGMR 316 SAKL + Sbjct: 299 SAKLWVIEK 307 >gi|255533217|ref|YP_003093589.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366] gi|255346201|gb|ACU05527.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366] Length = 301 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 156/308 (50%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 HVPVLL I LN P V +D TFG GG+S K + +IA D+DP A Sbjct: 2 ENNYHVPVLLAACIDGLNIRPEGVYVDVTFGGGGHSIEILKKLGDKGVLIAFDQDPDA-- 59 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +F F+ L++ + K VDG++ DLGVSS Q + +RGFS + Sbjct: 60 ---RRNEIDDPRFHFVDQNFAFLKNNLRLLGFKAVDGILADLGVSSHQFNEPERGFSTRF 116 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM G +A++V+N L +I GI GE K A +A AIV R P T Sbjct: 117 DAALDMRMDKQGKLTAAEVLNTYTEDQLHKIFGIYGEVKNAKSLARAIVTGRVERPVLTL 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D ++ + K ++ + FQALRI VN E+E L L +K GG L+V+ Sbjct: 177 ADFKAVAAAHIPKGKEHK--YMAQVFQALRIEVNAEMEVLENFLSQTADVIKPGGRLVVM 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR VK F A + + + P F+++T+K +V E++ N R+RS Sbjct: 235 SYHSLEDRPVKNFIAKGKFRGEVDKDFFGNEQKP--FKAVTRKAIVADAEELERNSRARS 292 Query: 309 AKLRAGMR 316 AKLR G R Sbjct: 293 AKLRVGER 300 >gi|89074178|ref|ZP_01160677.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34] gi|89050114|gb|EAR55640.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34] Length = 315 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFEHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q+ +F + FS ++ Y+ ++ VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQKI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA IV+ R++ + Sbjct: 119 MRDGPLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKE 178 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + V K+ HPATRSFQA+RI++N+E++E+ L A L G Sbjct: 179 PLTRTRELASLIAAVSPFKDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F +S + + K + P+Q+++ Sbjct: 239 LSVISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQDEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 +N R+RS+ LR R Sbjct: 299 GYNTRARSSVLRLAQR 314 >gi|282859045|ref|ZP_06268181.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010] gi|282588213|gb|EFB93382.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010] Length = 319 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 167/319 (52%), Gaps = 15/319 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 I H+PVLL + I LN G + +D TFG GG+S G ++ + D+D Sbjct: 2 IKKAESYHIPVLLNESIEGLNIHTGGIYVDVTFGGGGHSGEILSRLPVGCHLYSFDQDLD 61 Query: 70 A---VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 A ++ E ++ ++F+ ++ F L++++ +DG++ DLGVSS D R Sbjct: 62 AEQNLNHLTEKSKELNDKFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDETR 121 Query: 124 GFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 GFSF+ + +AS+++N+ DL + + GE KQ+ RIA AIVK R Sbjct: 122 GFSFRFEEAPLDMRMNKNAHKTASNILNEYEEDDLANLFYLYGELKQSRRIASAIVKART 181 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + +TT D +++ ++ + + FQALRI VN+E+E L + L SA + L Sbjct: 182 NQTIKTTTDFLKIVEPLFIRAREKK--DMAKLFQALRIEVNHEMEALKEMLASATELLSP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+++HSLEDR+VK F + + + + P F+ + KV+V T+E++ Sbjct: 240 GGRLSVITYHSLEDRIVKNFMKAGNAEGKVTQDFFGRIETP--FKLVNNKVIVATEEELE 297 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSAKLR + E Sbjct: 298 KNPRSRSAKLRIAEKKDEE 316 >gi|254880783|ref|ZP_05253493.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA] gi|319639793|ref|ZP_07994523.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A] gi|254833576|gb|EET13885.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA] gi|317388610|gb|EFV69459.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A] Length = 304 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 16/305 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVPVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 8 YHVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ GVD ++ DLGVSS D +RGFSF+ G Sbjct: 66 ---IVSDSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGK 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G++A+DVVN + + L I + GE K + ++A AIVK R T D Sbjct: 123 LDMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDF 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ +F + + FQALRI VN E+E L + L +A KALK GG L+V+++H Sbjct: 183 LEVIKP--FFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKL Sbjct: 241 SLEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKL 298 Query: 312 RAGMR 316 R + Sbjct: 299 RIAEK 303 >gi|291459281|ref|ZP_06598671.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078 str. F0262] gi|291418535|gb|EFE92254.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078 str. F0262] Length = 308 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 9/302 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 LL + I L V +D T G GG++ S C+ +I +D+D A+ E ++D Sbjct: 2 LLRETIEGLAIRADGVYVDGTLGGGGHALSICERLSGRGRLIGIDQDGAAIEAASERLKD 61 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y+++ + + + + + + ++ + DLGVSS Q+D G+RGFS++ LDMRM Sbjct: 62 YRDRAVIVRGNYEDIAEILMRLQIERVDGICLDLGVSSYQLDEGERGFSYRTDAALDMRM 121 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G +A+D+VN + + L RI+ GE+ A IA IV+ R+ +TT +LS +I Sbjct: 122 DQRGERTAADIVNSYSEEALFRIIRDYGEDHFARNIAKHIVQYREKKRIETTLELSGIIS 181 Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + HPA RSFQA+RI +N E+E L L L GG L V+SFHSLED Sbjct: 182 GAIPARVRALSGHPAKRSFQAIRIELNRELEVLENTLDRMIDLLSEGGRLCVISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F + + S + +TKK ++P++E++ NRRS+SAKLR Sbjct: 242 RIVKSKFRTAEKPCICPPDFPVCSCGRKSRGIVLTKKPILPSEEELLENRRSQSAKLRIF 301 Query: 315 MR 316 + Sbjct: 302 EK 303 >gi|260591737|ref|ZP_05857195.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319] gi|260536021|gb|EEX18638.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319] Length = 326 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 171/316 (54%), Gaps = 13/316 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + HVPVLL I LN P + +D TFG GG+SR K G ++ + D+D Sbjct: 14 VKTAETYHVPVLLNDSIEGLNIHPNGIYVDVTFGGGGHSREILSRLKKGCHLYSFDQDAD 73 Query: 70 AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRG 124 A + + ++F+ ++ F L++++ +D + + DLGVSS D RG Sbjct: 74 AEQNVSKMGLSEEQIDRFTFIRSNFRYLKNWMRYYSIDHIDGLLADLGVSSHHFDDETRG 133 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ G +A+D++N+ + + + IL + GE KQ+ RIA AIVK R+ Sbjct: 134 FSFRFEAPLDMRMNKRAGRTAADILNEYDEEQIADILYLYGEIKQSRRIAAAIVKAREKR 193 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F+TT+DL S+++ ++ + + FQALRI VN+E++ L + L A + L GG Sbjct: 194 TFKTTKDLLSIVEPFFLHAREKK--DMAKMFQALRIEVNHEMDALREMLLGATELLAPGG 251 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK S + + + P F+ I KV+ + + N Sbjct: 252 RLSVITYHSLEDRMVKNIMKSGNVEGKVKQDFYGRRETP--FRLINNKVITASNAEQELN 309 Query: 304 RRSRSAKLRAGMRTVE 319 RSRSAKLR + + Sbjct: 310 PRSRSAKLRIAEKKAD 325 >gi|194099359|ref|YP_002002459.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae NCCP11945] gi|239999615|ref|ZP_04719539.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|240014790|ref|ZP_04721703.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI18] gi|240017238|ref|ZP_04723778.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA6140] gi|240081125|ref|ZP_04725668.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|240113337|ref|ZP_04727827.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|240121313|ref|ZP_04734275.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID24-1] gi|240124146|ref|ZP_04737102.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|260439867|ref|ZP_05793683.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] gi|193934649|gb|ACF30473.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|317164866|gb|ADV08407.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae TCDC-NG08107] Length = 306 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 12/309 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK+F S + ++ + + + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGR-ALKPGEAEIAANPRARSAVLRVA 297 Query: 315 MRTVERSIE 323 RT E Sbjct: 298 ERTAGPIPE 306 >gi|238786715|ref|ZP_04630516.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia frederiksenii ATCC 33641] gi|238725083|gb|EEQ16722.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia frederiksenii ATCC 33641] Length = 320 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 172/320 (53%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 7 VVDNNYKHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQ 66 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS L YV + +DGV+ DLGVSS Q+D +RGF Sbjct: 67 AIEAAKSI---TDPRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGF 123 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM G+SA+D + +A+ D+ +L GEE+ A R+A AIV+R + P Sbjct: 124 SFMRDGPLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQP 183 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T++L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 184 MTRTKELADLIANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGR 242 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK F S + + A +S+ K ++P + Sbjct: 243 LSVISFHSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRSLKSVGK--MMPPDAE 300 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR R Sbjct: 301 VAENPRARSSVLRFAERLKA 320 >gi|254303471|ref|ZP_04970829.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323663|gb|EDK88913.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 314 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 171/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVKNPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D DRGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ +TKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIVTKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|90413032|ref|ZP_01221030.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis [Photobacterium profundum 3TCK] gi|90326047|gb|EAS42486.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis [Photobacterium profundum 3TCK] Length = 315 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 167/316 (52%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 +H+ VLL + + L P + +D TFG GG+SR + +DRDP A+ Sbjct: 2 SEQFEHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q +FS+ FS + Y+ ++ VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQSI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-- 184 + GPLDMRM + GISA++ + +A D+ +L GEE+ A RIA IV+ R++ Sbjct: 119 MRDGPLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKA 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + V ++ HPATRSFQA+RI++N+E++E+ L A K L G Sbjct: 179 PLTRTTELAALISNVSPFRDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P+++++ Sbjct: 239 LSVISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 N+R+RS+ LR R Sbjct: 299 GDNKRARSSVLRLAER 314 >gi|311113332|ref|YP_003984554.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931] gi|310944826|gb|ADP41120.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931] Length = 364 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 177/314 (56%), Gaps = 10/314 (3%) Query: 15 HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPV+L++ + LL P V++D T G GG++ + + SN+ I +DRD Sbjct: 48 QAQERHVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQ 107 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + + ++F + ++D + VDGV+ DLGVSSMQ+D RGF+ Sbjct: 108 AHAIAVERLARFGDRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFA 167 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ +A VVN+ + L RI+ GEEK A+RIA IV++R+ PF Sbjct: 168 YSYDAPLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPF 227 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L + IQK V + + HPA R+FQALRI VN+E+E L + + +A AL+ GG Sbjct: 228 TTTGELVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGR 287 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +S+HSLED++VK+ + + + H + IT+ PT+ ++A N Sbjct: 288 FVAMSYHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENP 347 Query: 305 RSRSAKLRAGMRTV 318 R+ SAKLRAG + Sbjct: 348 RAASAKLRAGEKIK 361 >gi|327479635|gb|AEA82945.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri DSM 4166] Length = 315 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL++ +A L+ LD TFG GG+SR + ++ D+DP A++ GQ Sbjct: 9 HITVLLDEAVAALSVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V V G++ DLGVSS Q+D RGFSF GP Sbjct: 69 -LAAEDGRFVVVQRSFAELGDEVAQRGWMGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SAS+ + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL Sbjct: 128 LDMRMDPSRGVSASEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + +PATR+FQ LRI +NNE+ +L GL +A +AL+ GG L+V+SFH Sbjct: 188 AKVLTDANPAWEKGK-NPATRAFQGLRIHINNELGDLECGLDAALEALEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + R + + K ++ +V N RSRSA Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLIGKPQYASEAEVKANPRSRSA 306 Query: 310 KLRAGMRT 317 +R + Sbjct: 307 VMRVAEKV 314 >gi|68171490|ref|ZP_00544874.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|67999096|gb|EAM85763.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa] Length = 297 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL +++ +LNP GKV +DATFGAGGY+R+ K V A+D+D ++ Sbjct: 1 MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D+ + + FS+++ + K VDG+VFD+GVSSMQ++ RGFSF K GPLD Sbjct: 61 VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120 Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S S + AS VN A +++ ++ G EK + +IA AI + R+ P +TT +L+ Sbjct: 121 MRMSTSTSNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ + SKN+ I PATR+FQA+RI+VN E+EEL QG+ + L GG +IVVSFHS Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S + P FQ I KKV+ P+ E++ N RSRSAKLR Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292 Query: 313 AGMRT 317 A ++ Sbjct: 293 AILKI 297 >gi|260596507|ref|YP_003209078.1| 16S rRNA m(4)C1402 methyltranserfase [Cronobacter turicensis z3032] gi|260215684|emb|CBA28014.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Cronobacter turicensis z3032] Length = 313 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 19/317 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP Sbjct: 3 ENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQ--- 59 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 60 AIAAAAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+ A L GG L V Sbjct: 180 TKELAEVV-AAATPIKDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVDVLAPGGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAF 302 +SFHSLEDRLVK+F +S + + A +++ K ++P + +VA Sbjct: 239 ISFHSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRDLRALGK--LMPGEAEVAE 296 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR RT Sbjct: 297 NPRARSSVLRIAERTGA 313 >gi|269120594|ref|YP_003308771.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC 33386] gi|268614472|gb|ACZ08840.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC 33386] Length = 308 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 173/308 (56%), Gaps = 10/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H PVL ++VI + V LD T G G+++ + S VIA+D+D A+ Sbjct: 1 MDYHKPVLFDEVIENIVTNKEGVYLDCTLGGAGHTQGILENTSEKGVVIAIDQDDDAIEF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 + + +YKE+ +F+ F L + G + ++ D+GVSS Q+D +RGFS++ Sbjct: 61 AGKKLENYKERIKIFKDNFKNLDTVLYMAGYEKVSGILMDIGVSSYQLDDPERGFSYKYE 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ + ISA +V+N+ + +++ IL GEE ++ RIA I + R+ +TT Sbjct: 121 AKLDMRMNKNAKISAYEVINEFSEQEIADILYKYGEEPKSRRIARKITEARKEKKIETTT 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++ + + K+ + HPA R+FQA+R++VN E+E L + L A + L+ G L+V++ Sbjct: 181 ELADIVIRAIG--KSMKRHPAKRTFQAVRMYVNQELEVLEEALEKAVELLEDRGRLLVIT 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + I ++ + ITKK +V + ++ N R+ S Sbjct: 239 FHSLEDRIVKNKFREFEKPCKCPPNIPICVCGKESLGKVITKKPIVAGELELNDNSRAHS 298 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 299 AKLRVFER 306 >gi|51473750|ref|YP_067507.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str. Wilmington] gi|116241372|sp|Q68WG7|RSMH_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51460062|gb|AAU04025.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str. Wilmington] Length = 306 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 5/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 H+PV+L +V+ +L P + LD TFGAGGYS + K +V +LD DP + Sbjct: 1 MSQYHIPVMLSEVLEVLAPKGYESYLDCTFGAGGYSNAILKSCYCSVTSLDCDPHVIERV 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ +DY E+FS + F+ + + DG+V DLGVSSMQ+D RGFSF GPLD Sbjct: 61 EQIKQDYGERFSFIKTNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA + VN A+ ++++ ++ G E + RIA I+K R+ A +T+ L+ + Sbjct: 121 MRMSAQGFSAEEFVNTADEEEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ + +I AT++FQA+RI++NNE+ EL + L + + LK G L+VVSFHSLE Sbjct: 181 VRYSI-GFRKGKIDSATKTFQAIRIYINNELGELERFLANVKNILKKNGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S K +A + IT KV+ P+ +++ N R+RSAKL Sbjct: 240 DRIVKNFFKENSAKPVARSKYAKDEIKIDQNKWLEIITHKVLTPSSQEIRLNVRARSAKL 299 Query: 312 RAGMRT 317 RA + Sbjct: 300 RAAKKI 305 >gi|148360438|ref|YP_001251645.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str. Corby] gi|263456280|sp|A5IFZ9|RSMH_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148282211|gb|ABQ56299.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str. Corby] gi|307609707|emb|CBW99217.1| hypothetical protein LPW_09981 [Legionella pneumophila 130b] Length = 308 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++F +F +F+Q++++ VDG++ DLGVSS Q+D +RGFSF Sbjct: 61 AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P TT Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L G L V+ Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPRGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + G V I F+ + K V P ++ N RSR Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|166031196|ref|ZP_02234025.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC 27755] gi|166029043|gb|EDR47800.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC 27755] Length = 311 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + I LN P + +D T G GG++ C+ +++ +D+D A+ Sbjct: 1 MEFKHKSVLLNETIDGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIVGIDQDAAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++D+ E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D +RGFS+++ Sbjct: 61 AASARLKDFGEKVTIVRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYRE 120 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN DL R++ GE+K A IA IV+ R P +TT Sbjct: 121 DAPLDMRMDTRQKMTARDIVNDYTEADLYRVIRDYGEDKFAKNIAKHIVQARAVKPVETT 180 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +LS +I+ ++ + HPA R+FQA+RI +N E++ L L L GG L + Sbjct: 181 AELSEIIRASIPMKFQKKSGHPAKRTFQAIRIELNRELDVLRDSLDDMIDLLNPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + ITKK ++P++E++ +N RS Sbjct: 241 ITFHSLEDRIVKSAFRKNENPCTCPPDFPVCVCGKKSKGSIITKKPILPSEEELEYNSRS 300 Query: 307 RSAKLRAGM 315 +SAKLR Sbjct: 301 KSAKLRIFE 309 >gi|150003970|ref|YP_001298714.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482] gi|294778005|ref|ZP_06743439.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510] gi|263445994|sp|A6L078|RSMH_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149932394|gb|ABR39092.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482] gi|294448063|gb|EFG16629.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510] Length = 304 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 16/305 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVPVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 8 YHVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ GVD ++ DLGVSS D +RGFSF+ G Sbjct: 66 ---IVSDSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGK 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G++A+DVVN + + L I + GE K + ++A AIVK R T D Sbjct: 123 LDMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDF 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++H Sbjct: 183 LEVIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKL Sbjct: 241 SLEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKL 298 Query: 312 RAGMR 316 R + Sbjct: 299 RIAEK 303 >gi|254787005|ref|YP_003074434.1| S-adenosyl-methyltransferase MraW [Teredinibacter turnerae T7901] gi|262825811|sp|C5BP42|RSMH_TERTT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237684519|gb|ACR11783.1| SAM-dependent methyltransferase MraW [Teredinibacter turnerae T7901] Length = 311 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 109/314 (34%), Positives = 170/314 (54%), Gaps = 14/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + I H VLL++ + L V +D TFG GG+SR+ + ++A D+DP Sbjct: 1 MTQEI--HYSVLLKESVDALVTNADGVYIDGTFGRGGHSRAVLQKLSPQGRLLAFDKDPE 58 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDR 123 AV+ G+E + +FS+ +F + + + + GV+ DLGVSS Q+D +R Sbjct: 59 AVAYGRE-LAGSDNRFSMVHDSFVNMASHWASAAHANNWSLSGVLLDLGVSSPQLDQAER 117 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF GPLDMRM S G +A++ +N A +L ++ GEE+ A R+A AIV R+ Sbjct: 118 GFSFMHDGPLDMRMDNSSGQTAAEWINTAEESELAFVIKEYGEERFARRMARAIVAEREK 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +P T L++++ + + + HPATR+FQA+RIF+N E+++L L + + L +G Sbjct: 178 SPITQTLRLANIVSEANPKWEKGK-HPATRAFQAIRIFINRELDDLTATLAQSLEMLPSG 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+V+SFHSLEDR+VK+F ++ M + K ++A Sbjct: 237 GRLVVISFHSLEDRIVKRFMRDQARGKQFPIGMPVTEDMLEKKLKTLGKAQRAGDRELAE 296 Query: 303 NRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 NIRSRSATLRVAEK 310 >gi|209524297|ref|ZP_03272847.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328] gi|209495388|gb|EDZ95693.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328] Length = 324 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 154/306 (50%), Gaps = 28/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PVL ++I L G LDAT G GG++R + V A+DRD A++ + Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTRMIFQAAPNVRVTAIDRDLEAIAAAKSM 78 Query: 78 MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + + FSQ DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTIGNCGARLKFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA++++N + K L I GEE+ + RIA IV+ + T + Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVE--KRPFQTTEHLAN 194 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + RIHPATR FQALRI VN E+ L L +A LK G + ++SFHS Sbjct: 195 AIANCVPSKYRYGRIHPATRVFQALRIAVNGELTALETFLETAPTWLKPRGRIGIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F H + + +TKK + P +++ N R+RSAKLR Sbjct: 255 LEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEINQNPRARSAKLR 297 Query: 313 AGMRTV 318 R+ Sbjct: 298 LAERSA 303 >gi|262831577|sp|A4VIH0|RSMH_PSEU5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 315 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL++ +A LN LD TFG GG+SR + ++ D+DP A++ GQ Sbjct: 9 HITVLLDEAVAALNVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V V G++ DLGVSS Q+D RGFSF GP Sbjct: 69 -LAAEDGRFVVVQRSFAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL Sbjct: 128 LDMRMDPSRGVSAAEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + PATR+FQ LRI +NNE+ +L +GL +A AL+ GG L+V+SFH Sbjct: 188 AKVLTDANPAWEKGK-SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + R + + K ++ +V N RSRSA Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLIGKPQYASEAEVKANPRSRSA 306 Query: 310 KLRAGMRT 317 +R + Sbjct: 307 VMRVAEKV 314 >gi|315186407|gb|EFU20167.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6578] Length = 324 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 174/325 (53%), Gaps = 7/325 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPVL E+V A L+ +++DAT G GG+S + + ++ +D DP Sbjct: 1 MVSMEIVHVPVLREEVGAFLSVR-DGLVVDATLGEGGHSEALLESHPGIRLLGVDADPIM 59 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +S E + + ++ L Q F + L+ + + G++ DLG+SS ++ RGFSF + Sbjct: 60 LSRAGERLSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLR 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR+S + ASDVVN + +L + GEE + RIA AIV R+ P T+ Sbjct: 120 REPLDMRLSPYLPMKASDVVNTYSETELVDVFSRFGEEPFSRRIARAIVSERRKMPITTS 179 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ K V + RIHPATR FQALRI VN E+E + + +R+ + L GG + V Sbjct: 180 DHLAEVVMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+ F + I + + +TKK V P +E+V N S Sbjct: 240 ISFHSLEDRIVKRLFRFYASACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRTNPAS 299 Query: 307 RSAKLRAGMRTVERSIEDDSFVHLP 331 RSA+LR + + + + LP Sbjct: 300 RSARLRVLEKVRDAAHLREEGHALP 324 >gi|269104116|ref|ZP_06156813.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp. damselae CIP 102761] gi|268164014|gb|EEZ42510.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp. damselae CIP 102761] Length = 315 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFEHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSKLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q+ +F++ FS ++ Y+ ++ VDG++ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQKI---DDPRFNIIHGPFSGMEKYMEERDLIGRVDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G +AS+ + A+ D+ +L GEE+ A RIA IV+ R+ + Sbjct: 119 MRDGPLDMRMDPTSGQAASEWLATADASDIAWVLKEFGEERFAKRIARGIVEHREDPEKE 178 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + V K+ HPATRSFQA+RI++N+E++E+A L A L GG Sbjct: 179 PLTRTLQLANLIAQVSPFKDKHKHPATRSFQAIRIYINSELDEIATALNGAVNILAPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F ++S + + + K + P+Q ++ Sbjct: 239 LSVISFHSLEDRMVKRFMRNKSKGPEIPAGLPLTEEQIKALGSADLKLASKAIKPSQNEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 +N R+RS+ LR R Sbjct: 299 GYNARARSSVLRLAER 314 >gi|238752424|ref|ZP_04613901.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia rohdei ATCC 43380] gi|238709357|gb|EEQ01598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia rohdei ATCC 43380] Length = 320 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 121/314 (38%), Positives = 175/314 (55%), Gaps = 19/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP AV + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPLAVEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA+D + +A+ +D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAADWLMKASAEDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 307 ARSSVLRFAERIKE 320 >gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] Length = 328 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 137/320 (42%), Positives = 188/320 (58%), Gaps = 8/320 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76 HV VL++ ++ + P V +D TFGAGGY+R G+ VI +DRDP + Sbjct: 5 APHVSVLIKPLVRAVAPVQ-GVWVDGTFGAGGYTRDLLAAGADKVIGIDRDPSVFPLSAD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ L TFS++ + V + VDGVV DLGVSSMQID +RGFSFQK GPLDMR Sbjct: 64 WRAAMPDRVDLRLGTFSEMDEIVGEM-VDGVVLDLGVSSMQIDQAERGFSFQKEGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M SG +A+D+ N ++L IL + GEE+ + RIA AIV+ R P T +L+ ++ Sbjct: 123 MGDSGPTAADLCNTLPEEELANILYLFGEERASRRIARAIVQAR---PITRTLELAEIVS 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HPATRSFQALRI VN+E +L GL +AE+ LK GG L VV+FHS+EDR Sbjct: 180 SCLPRQKPGQSHPATRSFQALRIAVNDEYRQLYDGLAAAERILKPGGYLAVVTFHSVEDR 239 Query: 257 LVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F R+G R+ + P F +T+K + P ++VA N RSRSA LR Sbjct: 240 MVKRFMQLRAGAVGGGSRYAPEVQSAPPAFTLVTRKAIQPDDDEVAANPRSRSALLRVAK 299 Query: 316 RTVERSIEDDSF-VHLPRLP 334 RT + D + +P L Sbjct: 300 RTDAPAEMLDPGEIGMPTLE 319 >gi|325294232|ref|YP_004280746.1| ribosomal RNA small subunit methyltransferase H [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064680|gb|ADY72687.1| Ribosomal RNA small subunit methyltransferase H [Desulfurobacterium thermolithotrophum DSM 11699] Length = 296 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 26/309 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H PVLL++ I LL ++ +DAT G GG++ + + VIA+DRD A+ + Sbjct: 6 YHPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEANPENRVIAIDRDEEAIERAMK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ S++ A FSQ+ + K V+GV+FDLGVS + +RGF+ + PL Sbjct: 66 RLERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFDLGVSHFHLRG-NRGFTVWEEQPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A DVVN+ + K+L I+ GEEK A +IA IV+RR+ P +TT +L+ Sbjct: 125 DMRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKFARKIAREIVRRRKIKPIETTLELA 184 Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++++ + + HPA ++FQA+RIFVN E +E+ +G+ A + G ++V++F Sbjct: 185 KIVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNREFQEIEEGIPEAANHVACSGRIVVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + G F+ ITKK V PT+E++ N SRSAK Sbjct: 245 HSLEDRLVKNIFRNLEG-----------------FKVITKKPVEPTEEEIKKNPASRSAK 287 Query: 311 LRAGMRTVE 319 LRA R E Sbjct: 288 LRAIERVCE 296 >gi|88657585|ref|YP_507355.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str. Arkansas] gi|123493393|sp|Q2GGS8|RSMH_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88599042|gb|ABD44511.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str. Arkansas] Length = 297 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL +++ +LNP GKV +DATFGAGGY+R+ K V A+D+D ++ Sbjct: 1 MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D+ + + FS+++ + K VDG+VFD+GVSSMQ++ RGFSF K GPLD Sbjct: 61 VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120 Query: 135 MRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRMS S + AS VN A +++ ++ G EK + +IA AI + R+ P +TT +L+ Sbjct: 121 MRMSTSISNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ + SKN+ I PATR+FQA+RI+VN E+EEL QG+ + L GG +IVVSFHS Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S + P FQ I KKV+ P+ E++ N RSRSAKLR Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292 Query: 313 AGMRT 317 A ++ Sbjct: 293 AILKI 297 >gi|240116316|ref|ZP_04730378.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|240118603|ref|ZP_04732665.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|240128816|ref|ZP_04741477.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] Length = 306 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 12/309 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V ++ PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNV-RTRERGQDPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK+F S + ++ + + + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGR-ALKPGEAEIAANPRARSAVLRVA 297 Query: 315 MRTVERSIE 323 RT E Sbjct: 298 ERTAGPIPE 306 >gi|54310311|ref|YP_131331.1| S-adenosyl-methyltransferase MraW [Photobacterium profundum SS9] gi|50402223|sp|P62475|RSMH_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46914752|emb|CAG21529.1| putative S-adenosylmethionine-dependent methyltransferaseinvolved in cell envelope biogenesis [Photobacterium profundum SS9] Length = 315 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 168/316 (53%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 +H+ VLL + + L P + +D TFG GG+SR + +DRDP A+ Sbjct: 2 SEQFEHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q +FS+ FS + Y+ ++ VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQTI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + GISA++ + +A D+ +L GEE+ A RIA IV+ R++ + Sbjct: 119 MRDGPLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKK 178 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + V ++ HPATRSFQA+RI++N+E++E+ L A K L G Sbjct: 179 PLTRTKELAALISDVSPFRDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P+++++ Sbjct: 239 LSVISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 N+R+RS+ LR R Sbjct: 299 GDNKRARSSVLRLAER 314 >gi|325954324|ref|YP_004237984.1| ribosomal RNA small subunit methyltransferase H [Weeksella virosa DSM 16922] gi|323436942|gb|ADX67406.1| Ribosomal RNA small subunit methyltransferase H [Weeksella virosa DSM 16922] Length = 301 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 167/316 (52%), Gaps = 23/316 (7%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 M+S+ H PVLL++ + L P V +D TFG GG+SR + A Sbjct: 1 MMNSS------YHNPVLLQESVDALVVNPSGVYVDCTFGGGGHSREILSRLDDNGRLYAF 54 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCG 121 D+D A + E+F L F L++ + K VDG++ DLGVSS Q D Sbjct: 55 DQDEDAKQN-----KIEDERFELIDQNFRYLKNNLRFRGVKQVDGILADLGVSSHQFDTP 109 Query: 122 DRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS + G LDMRM+ + SA ++VN+ + L I GE K + R+A I+K R Sbjct: 110 ERGFSIRFDGELDMRMNINSSLSAKNIVNEYDEDQLADIFYNYGELKGSRRLASEIIKAR 169 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + +T + L + + KN + FQALRI VN+E+ L + L + + ++ Sbjct: 170 NNQSIETIEHLKDIFS---FIPKNKENKFFAQVFQALRIEVNDEMAALREMLLQSGEIVR 226 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L+V+S+HSLEDRLVK++ + + R + + + P F+ + KV+VP+++++ Sbjct: 227 PEGRLVVISYHSLEDRLVKRYMRNGVFEGEPERDIYGNWSAP--FKPLQSKVIVPSEKEI 284 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAK+R ++ Sbjct: 285 EENSRARSAKMRIAVK 300 >gi|282880611|ref|ZP_06289317.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS 5C-B1] gi|281305506|gb|EFA97560.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS 5C-B1] Length = 312 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 13/314 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I HVPVLLE+ I LN P + +DATFG GG+S ++ + D+D Sbjct: 3 IKTAGSYHVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDLD 62 Query: 70 AVSCGQE-----TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 A Q+ ++D Y + +DG++ DLGVSS D +RG Sbjct: 63 AEKNIQQEGHEVLLQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENRG 122 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ ++A+DV+N N + L I + GE K A RIA +VK R Sbjct: 123 FSFRFDAPLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQK 182 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +T DL ++ + + + FQALRI VN+E+E L + L SA++ L GG Sbjct: 183 NITSTHDLIQAVEAVFGKVREKK--DLAKLFQALRIEVNHEMEALKELLNSAQELLTTGG 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V+++HSLEDR+VK + + + + F+ + KV+ PT ++ N Sbjct: 241 RLVVITYHSLEDRMVKNIMKTGNVQGKVQQDFFGRIE--TTFKLLNNKVITPTPQEQQEN 298 Query: 304 RRSRSAKLRAGMRT 317 RSRSAKLR + Sbjct: 299 PRSRSAKLRIAEKI 312 >gi|330811587|ref|YP_004356049.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379695|gb|AEA71045.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 315 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 176/308 (57%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPGGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++ V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELASEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM GISA++ VN A V+++ R+ GEE+ + R+A A+V+RR PF+ T D Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDIKPFERTGD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEVGLEAALEALEIGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K ++ ++ N R+RS Sbjct: 246 HSLEDRIVKLFMRKLTKGEADNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|24378941|ref|NP_720896.1| S-adenosyl-methyltransferase MraW [Streptococcus mutans UA159] gi|30173045|sp|Q8DVM7|RSMH_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24376827|gb|AAN58202.1|AE014891_6 conserved hypoyhetical protein [Streptococcus mutans UA159] Length = 316 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I +L+ P + +DAT G G+S ++ D+D A+ + Sbjct: 7 HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y Q S + F L+ + D +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + +DL R+ GE+K + +IA I R+ +TT + Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + L A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F + + F + +K ++P +++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNARELSENNRAHSA 306 Query: 310 KLRAGMRTVE 319 KLR + Sbjct: 307 KLRVIQKIRN 316 >gi|296106496|ref|YP_003618196.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99 Alcoy] gi|295648397|gb|ADG24244.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99 Alcoy] Length = 308 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++F +F +F+Q++++ VDG++ DLGVSS Q+D +RGFSF Sbjct: 61 AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P TT Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L G L V+ Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEECLDVLGPRGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + G V I F+ + K V P ++ N RSR Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|225568665|ref|ZP_03777690.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM 15053] gi|225162593|gb|EEG75212.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM 15053] Length = 311 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 167/307 (54%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ I LN P +D T G GG++ C+ N ++ +D+D A++ Sbjct: 4 EHKSVLLDETINGLNIRPDGTYVDGTLGGGGHAYEICRHLGNKGSIVGIDQDAAAITAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 ARLKDFGEKVTIVRSNYCDMKSQLHKLGIDRVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA I R+ +TT L Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIAAARRERSIETTGQL 183 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++ + + HP+ R+FQA+RI +N E+E L L LK GG L +++F Sbjct: 184 TEIIRQAIPMKYQKKSGHPSKRTFQAIRIELNRELEVLRDSLDEMIDLLKPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + +T+K ++P +E++ +N R++SA Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPSDFPVCVCGKESKGSILTRKPILPGEEELEYNSRAKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|293381714|ref|ZP_06627695.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1] gi|290921761|gb|EFD98782.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1] Length = 315 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 158/314 (50%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I L P G + +DATFG GG ++ ++ D+D +A+ Sbjct: 1 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGDAKYLLSKIDTGTLVGFDQDEYAIKS 60 Query: 74 GQETMR-----DYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + + L FS L+ G+DG+ +DLGVSS Q D DRG Sbjct: 61 AKLNFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG 120 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM S A +VN + K+L IL G+EK + +IAH IV+RR+ Sbjct: 121 FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I+ + + HPA +SFQALR+ VN+E++ L L A K L+ G Sbjct: 181 PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VK+ F S + + + + K +V + ++ Sbjct: 241 GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN 300 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 301 NNRSHSAKLRVAEK 314 >gi|319944706|ref|ZP_08018970.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia mirabilis ATCC 51599] gi|319741955|gb|EFV94378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia mirabilis ATCC 51599] Length = 329 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 173/313 (55%), Gaps = 14/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + G H+PVLL + +A L P V +D TFG GG+SR + ++ALDRDP AV+ Sbjct: 13 SSGAHLPVLLHEAVAALAIRPDGVYVDGTFGRGGHSRHILQALGPKGRLLALDRDPEAVA 72 Query: 73 CGQETMRDYKE-QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ++ + +F + A FS L + + +DG++ DLG+SS Q+D RGFSF Sbjct: 73 AARAWKQESGDARFEIVHARFSSLDEVLDAHGLTHIDGLLLDLGISSPQVDDPRRGFSFT 132 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--- 184 GPLDMRM + G+SA + + QA V+ +T +L G+E+ A IA I RR Sbjct: 133 GDGPLDMRMDPTVGLSAHEWLMQATVEQITEVLKRDGDERFAFPIAKEIAARRDQTDGQG 192 Query: 185 -FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T Q + KN+ +PATR+FQALRI N+E ELA+ L A + L GG Sbjct: 193 IQTTRQLADLVAGVIRRRQKNSAKNPATRTFQALRIHTNDEGGELARVLNVALRRLATGG 252 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+SFHS EDR+VK+F A +G+ + + + +S+ + V+P + +VA N Sbjct: 253 RLSVISFHSNEDRVVKQFIARHAGRDAERHPVTGAWLAEPLLKSLGR--VLPGEAEVATN 310 Query: 304 RRSRSAKLRAGMR 316 R+RSA LR R Sbjct: 311 PRARSAILRVAER 323 >gi|254451868|ref|ZP_05065305.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238] gi|198266274|gb|EDY90544.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238] Length = 325 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 144/323 (44%), Positives = 187/323 (57%), Gaps = 8/323 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVS 72 H+PVL+ +IA +P LD TFG GGY++ G+ VI +DRDP Sbjct: 4 TDDTAPHIPVLIGPLIAACSPIS-GTWLDGTFGVGGYTQRLLDAGANKVIGVDRDPAVFK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Q L + TFS L D +DG+V DLGVSSMQID +RGFSF + GP Sbjct: 63 MAQ--WAVDNPAVELVEDTFSNLDAVASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGP 118 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN+ + DL IL GEE+ + RIA IV++R P TT L+ Sbjct: 119 LDMRMGQEGRSAADIVNETDETDLADILYTYGEERASRRIARKIVEQRDREPITTTLRLA 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+ + SK + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L VV+FHS Sbjct: 179 KLIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKTGGYLAVVTFHS 238 Query: 253 LEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 +EDR+VK+F R G A R+ F+ +TKK ++VA N RSRSAKL Sbjct: 239 VEDRMVKRFLQQRGGGMGNANRYSPVLETEKPAFEIVTKKARAADDDEVAQNPRSRSAKL 298 Query: 312 RAGMRTVERSIE-DDSFVHLPRL 333 R RT S D S + +P+L Sbjct: 299 RVARRTDAPSGSVDRSKLGMPQL 321 >gi|57239214|ref|YP_180350.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|58579172|ref|YP_197384.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|68565416|sp|Q5HB44|RSMH_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57161293|emb|CAH58214.1| putative S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|58417798|emb|CAI27002.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str. Welgevonden] Length = 301 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL++++ +L+P G + +DATFG+GGYSR+ V A+D+D + + ++ Sbjct: 2 YHTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKL 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 D+ + F FS++Q + + + VVFD+GVSSMQ++ RGFSF K+GPLD Sbjct: 62 SNDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLD 121 Query: 135 MRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRMS SG+ A VN + ++ ++ G EK + +IA AIV R TT +L+ Sbjct: 122 MRMSTSLSGVDARMFVNTVSEVEMANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I+ V SKN+ I PATR+FQA+RI+VN E+EEL +G+ A L GG +IV+SFHS Sbjct: 182 SIIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + FQ I KK++ PT E++ N R+RSAKLR Sbjct: 242 LEDRIVKVIFKLLCDGKSVNLLNLGLG-----FQLINKKIIRPTAEEIHSNPRARSAKLR 296 Query: 313 AGMR 316 A ++ Sbjct: 297 AILK 300 >gi|238754428|ref|ZP_04615783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia ruckeri ATCC 29473] gi|238707257|gb|EEP99619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia ruckeri ATCC 29473] Length = 304 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 168/307 (54%), Gaps = 15/307 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 LL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 2 LLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 58 Query: 81 YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 59 TDPRFSIVHGPFSELAHYVRELDLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 118 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M GISA++ + +A D+ +L GEE+ A R+A AIV+R + P T +L++LI Sbjct: 119 MDPSRGISAAEWLMKAGADDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTTELANLI 178 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 179 ANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALEGALEVLAPAGRLSVISFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRSAKLR 312 R+VK F ++S + + K V +P+ +VA N R+RS+ LR Sbjct: 238 RIVKNFIRNQSRGPKVPAGLPLTEEQLQSLGGRNLKAVGKMMPSDAEVAENPRARSSVLR 297 Query: 313 AGMRTVE 319 R Sbjct: 298 FAERINA 304 >gi|289547926|ref|YP_003472914.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484] gi|289181543|gb|ADC88787.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484] Length = 290 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 132/304 (43%), Positives = 181/304 (59%), Gaps = 24/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVLLE LL GK+ +D T GAGG++R + VI +DRDP A+ +E Sbjct: 5 HFPVLLETATDLLLGNGGKLYVDCTVGAGGHTRRILEKNPQAYVIGIDRDPQALKLAEEN 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +R+++ +FSL+ A F L + + + VDG +FDLG+S MQ+ RGFSFQ+ LD Sbjct: 65 LREFEGRFSLYHANFVHLDEVLLQEGVEQVDGFLFDLGMSMMQLKS-ARGFSFQRDEFLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +A VVN+ + +DL RIL GEE ASRIA AIV RR+ P +TT +L Sbjct: 124 MRMDPSDPITAYHVVNRYSQRDLERILREYGEEPYASRIARAIVLRRKEKPIETTGELVQ 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ V + + RIHPATR FQA+RI VN E+ L + L K L+ GG L+V+SFHSL Sbjct: 184 IVLSVVPY-RRGRIHPATRVFQAIRIEVNGELRNLKEALPKTLKFLRKGGRLVVISFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK FF S ++ + +TKK + P++E++ N SRSAKLRA Sbjct: 243 EDRIVKNFFKEHSHEI----------------KPLTKKPITPSREEIEKNPPSRSAKLRA 286 Query: 314 GMRT 317 G + Sbjct: 287 GEKV 290 >gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str. 'Sheila Smith'] Length = 299 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 122/295 (41%), Positives = 179/295 (60%), Gaps = 5/295 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK 82 +L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + +E ++Y Sbjct: 1 MLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYG 60 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS G+ Sbjct: 61 ERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDMRMSGQGL 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ +++ ++ Sbjct: 121 SAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIVRSSI-GF 179 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 + +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLEDR+VK FF Sbjct: 180 RKGKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLEDRIVKNFF 239 Query: 263 ASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 S K + + + IT K + P+ ++V N R+RSAKLRA Sbjct: 240 KENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAA 294 >gi|212551099|ref|YP_002309416.1| S-adenosyl-methyltransferase MraW [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226709918|sp|B6YS33|RSMH_AZOPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212549337|dbj|BAG84005.1| S-adenosyl-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 304 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 12/309 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 ++ H+PVLL++ + LN G + +D TFG GG+S+ ++ D+D + Sbjct: 3 KTSVYHHIPVLLKESVDGLNVCSGGIYVDVTFGGGGHSKEILVRLGNTGHLYGFDQDEDS 62 Query: 71 VSCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 D + F + + D+ K +DG++ DLGVSS+ D +RGFSF+ Sbjct: 63 EKN---IFSDIRFTFVRSNFRYLAHFMDWHNVKEIDGLLADLGVSSIHFDDCNRGFSFRF 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ G +A+D++N + L + + GE K ++ IAHAIV+ R QT Sbjct: 120 IGNLDMRMNQRKGETAADILNTYSENKLIDMFDLYGELKNSASIAHAIVQARMQREIQTV 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 QD +++ V K + + FQALRI VN E++ L + L A++ L++GG + ++ Sbjct: 180 QDFLDILKPFVRKGKVEK--QLAQIFQALRIEVNKELDALKEMLIQAKQLLRSGGRIAII 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDRLVK FF + S R + P F+ I +V+V + E+V N RSRS Sbjct: 238 TYHSLEDRLVKFFFKTGSFYEKIERDFYGNFLSP--FKIINHRVIVASDEEVKRNPRSRS 295 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 296 AKLRIAEKI 304 >gi|261401195|ref|ZP_05987320.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970] gi|269208876|gb|EEZ75331.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970] Length = 319 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 118/317 (37%), Positives = 166/317 (52%), Gaps = 11/317 (3%) Query: 13 IHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 + T H+ VL + + L V +D TFG GG+SR ++ D+DP Sbjct: 1 MSETENYRHITVLPYEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDP 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 AV+ +E + ++ S+ F+ Q + D VDG +FDLGVSS QID RGF Sbjct: 61 RAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGF 119 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P Sbjct: 120 SFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L + V ++ PATR+FQA+RIF+N E+EE+ L LK GG Sbjct: 180 IDTTRKLAQLAAQNV-RTRERGQDPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303 L V++FHSLEDR+VK+F S R A P I K + P +VA N Sbjct: 239 LAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAAN 298 Query: 304 RRSRSAKLRAGMRTVER 320 R+RSA LR RT Sbjct: 299 PRARSAVLRVAERTAGP 315 >gi|256821906|ref|YP_003145869.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069] gi|256795445|gb|ACV26101.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069] Length = 311 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 T +H VLLE+ + L P + +D TFG GG+SR+ +I D+D A+ Sbjct: 2 STKQEHDAVLLEEAVEALVIDPNGIYIDCTFGRGGHSRAILSHLSEEGRLIGFDKDLQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + G++ ++ +F++ +FS ++ V GV+ DLGVSS Q+D +RGFSF Sbjct: 62 AVGEQ-LQQEDARFNIVHESFSLLEQEVSKRGWVGEVTGVLMDLGVSSPQLDQAERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G +A + + +D+ GEE+ A RIA AIV++R AP Sbjct: 121 MQDGPLDMRMDTTRGQTAEQWIANTDEEDMVWAFKAFGEERYAKRIARAIVEKRAKAPIT 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L+ +I + + ++ HPATR FQA+RI VN E+++L L LK GG L+ Sbjct: 181 RTKQLADIISEAHPRWEKHK-HPATRCFQAIRIAVNRELDDLKDTLEQVLNVLKVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+F ++ + + K ++ N R+ Sbjct: 240 AISFHSLEDRIVKQFIQKQAQGQNFPAGLPITEDMINRRMKKVGKFTKAGDSELERNIRA 299 Query: 307 RSAKLRAGMR 316 RSA +R + Sbjct: 300 RSAVMRVAEK 309 >gi|152980341|ref|YP_001354713.1| S-adenosyl-methyltransferase MraW [Janthinobacterium sp. Marseille] gi|263456176|sp|A6T2G6|RSMH_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151280418|gb|ABR88828.1| S-adenosyl-methyltransferase [Janthinobacterium sp. Marseille] Length = 322 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 13/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVI 62 M++ H VLL++ + L V +D TFG GG+SR + ++ Sbjct: 1 MNADAVQQYQ-HRTVLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLL 59 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 A D+D A++ E AT S+ K VDGV+ DLG+SS Q+D Sbjct: 60 AFDKDTQAIANAATIDDQRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDAT 119 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM G+SA++ + + + +++ GEE+ A +IA AIV RR Sbjct: 120 RGFSFRADGPLDMRMDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRA 179 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +T+ L+ ++ +TV + PATR+FQA+RIF+N E+EEL L A + L Sbjct: 180 VEPISSTRQLAEIVARTVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRYLAP 238 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQED 299 G L+V+SFHSLEDR+VK+F A ++ R + + + +++ V P+ + Sbjct: 239 HGRLVVISFHSLEDRIVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSR--VKPSAAE 296 Query: 300 VAFNRRSRSAKLRAGMR 316 ++ N R+RSA +R R Sbjct: 297 ISENPRARSAVMRVAER 313 >gi|89055260|ref|YP_510711.1| S-adenosyl-methyltransferase MraW [Jannaschia sp. CCS1] gi|122498265|sp|Q28NM6|RSMH_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88864809|gb|ABD55686.1| methyltransferase [Jannaschia sp. CCS1] Length = 327 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 142/329 (43%), Positives = 190/329 (57%), Gaps = 7/329 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+ I H+PVLL ++ + P V LD TFGAGGY+R + G++ VI +DRD Sbjct: 1 MTDEI--DKAPHIPVLLGAILREVAPVS-GVWLDGTFGAGGYARGLLEGGADTVIGVDRD 57 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y + L + TFS L + +DGV DLGVSSMQ+D +RGFSF Sbjct: 58 PLAFEMAADWAGSYGDALRLKEGTFSNLDTLADE-PLDGVALDLGVSSMQLDLAERGFSF 116 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA D+VN A K L IL GEE+ A RIA AIV R + Sbjct: 117 MRDGPLDMRMGQIGVSAEDLVNDAPEKLLADILFQYGEERAARRIAKAIVAERLKCRINS 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++K + K + HPATRSFQA+RI VN+E +LAQGL +AE+AL+ GG L V Sbjct: 177 TLQLAGIVEKCLPSKKPGQSHPATRSFQAIRIAVNDEFGQLAQGLMAAERALRPGGKLAV 236 Query: 248 VSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS EDR+VKKF + R S R+ + A F +K + P +++A N R+ Sbjct: 237 VTFHSSEDRIVKKFMSERSSTGGGGSRYAPEAAAKVPGFTLTPRKAIPPDADEIARNTRA 296 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLP 334 RSAKLR RT + + LP+L Sbjct: 297 RSAKLRIATRTDAPAQPVAPETLGLPQLE 325 >gi|313156840|gb|EFR56280.1| S-adenosyl-methyltransferase MraW [Alistipes sp. HGB5] Length = 368 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 16/316 (5%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + + H PVLL++ + LL P +D TFG GG+SR + G + A D+D Sbjct: 62 SATNMSQYHTPVLLKESVDLLAVDPAGTYVDLTFGGGGHSRRILEKLGPGGRLYAFDQDR 121 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + +F ++ F L+ + VDG++ DLGVSS D +RGF Sbjct: 122 DTRANC-----PDDGRFHYVESNFRFLRGALRLREVEQVDGILADLGVSSHHFDAVERGF 176 Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM+ G +A+ VVN LTR+LG GE + +IA+ IV+ R++AP Sbjct: 177 SFRGEAPLDMRMNQRGALTAARVVNGYPADALTRLLGEWGELETPWKIANCIVRAREAAP 236 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L ++ K + T+ FQALRI VN E+E L L + K L+ GG Sbjct: 237 IETTAQLVEAVKPCT--PKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGR 294 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+S+HSLEDRLVK F S + + P F+ IT+K VVPT E++ N Sbjct: 295 LVVISYHSLEDRLVKNFLRSGNFSGSVEKDFFGRALTP--FEIITRKAVVPTAEELERNP 352 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLRA + Sbjct: 353 RSRSAKLRAAAKRENE 368 >gi|58617225|ref|YP_196424.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Gardel] gi|68565410|sp|Q5FH93|RSMH_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58416837|emb|CAI27950.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str. Gardel] Length = 301 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL++++ +L+P G + +DATFG+GGYSR+ V A+D+D + + ++ Sbjct: 2 YHTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKL 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 D+ + F FS++Q + + + VVFD+GVSSMQ++ RGFSF K+GPLD Sbjct: 62 SHDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLD 121 Query: 135 MRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRMS SG+ A VN + ++ ++ G EK + +IA AIV R TT +L+ Sbjct: 122 MRMSTSLSGVDARMFVNTVSEVEIANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I+ V SKN+ I PATR+FQA+RI+VN E+EEL +G+ A L GG +IV+SFHS Sbjct: 182 SIIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + FQ I KK++ PT E++ N R+RSAKLR Sbjct: 242 LEDRIVKVMFKLLCDGKSVNLLNLGLG-----FQLINKKIIRPTAEEIHSNPRARSAKLR 296 Query: 313 AGMR 316 A ++ Sbjct: 297 AILK 300 >gi|50914761|ref|YP_060733.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10394] gi|50903835|gb|AAT87550.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS10394] Length = 337 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 173/327 (52%), Gaps = 15/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68 Query: 60 --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + +DG+++DLG Sbjct: 69 EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + + F+ +++ Sbjct: 249 SIQEAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K ++P+ ++A N+R+ SAKLR + Sbjct: 309 KPILPSHSELAANKRAHSAKLRVAKKI 335 >gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW] gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW] Length = 329 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 131/309 (42%), Positives = 187/309 (60%), Gaps = 7/309 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78 H+PVL ++V+ L P G V++D TFGAGGY+ + V A+DRDP AV+ G Sbjct: 16 HIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHALA 75 Query: 79 RDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ TF ++ VDG+ D+GVSS QID RGFSF+ GPLDM Sbjct: 76 ARHPGRLTVLDGTFGCMESLLAAHGITRVDGIALDIGVSSPQIDDPSRGFSFRFDGPLDM 135 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+D+VN+ + ++ I+ GEE+ + R+A AIV RR+ AP T DL+ ++ Sbjct: 136 RMGSHGTTAADIVNERDEAEIADIVWRYGEERHSRRVARAIVARRREAPITRTLDLAEIV 195 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK+ I PATR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FHSLED Sbjct: 196 RSVVPKSKDG-IDPATRTFQALRIAVNDELGELERGLAAAERLLAPGGRLAVVTFHSLED 254 Query: 256 RLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F SRS A + P++A F+ I + V P ++A N R+RSA+LR+ Sbjct: 255 RVVKEFLRSRSAAAPAPSRHLPAPADAPAPTFRLIARSGVTPAPAELAANPRARSARLRS 314 Query: 314 GMRTVERSI 322 RT + Sbjct: 315 AERTSAPAR 323 >gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256] gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256] Length = 325 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 135/316 (42%), Positives = 197/316 (62%), Gaps = 10/316 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL++VIA L APG+ +DATFGAGGY+R+ G+ VIA DRDP A++ G+ + Sbjct: 10 HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGAEVIACDRDPDAIAGGEALVA 69 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +L F ++ + ++G+D + FD+GVSSMQ+D G+RGFSFQK GPLDMR Sbjct: 70 EADGRLTLIHGRFGEIDRLLAERGIDAVDGITFDIGVSSMQLDQGERGFSFQKDGPLDMR 129 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ G SA+D +N+A+ ++ +L G+E+Q+ R+A AIV R P T +L+S+++ Sbjct: 130 MAQEGESAADWLNRADEYEIADVLYHYGDERQSRRVARAIVAAR---PLTRTSELASVVR 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + PAT+SFQA+RI +N E++EL GL +AE+ L+ GG L VVSFHS EDR Sbjct: 187 KALRHPPGAPKDPATKSFQAIRIHINRELDELVAGLAAAERVLRPGGRLAVVSFHSTEDR 246 Query: 257 LVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK F RSG A + A A F++ +K V P + + A N R+RSA LR+ Sbjct: 247 IVKHFLRERSGGDAAGSRHRPAPTAAARAATFETPARK-VRPGKAEEARNPRARSATLRS 305 Query: 314 GMRTVERSIEDDSFVH 329 +RT + +S Sbjct: 306 AVRTAAPAWPGNSMKE 321 >gi|297194883|ref|ZP_06912281.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|297152504|gb|EFH31797.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 318 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 123/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + +L PA PG V++D T G GG+S + + ++ALDRD A Sbjct: 2 SQTRHVPVMLQRCLDMLAPALRTPGGVVVDCTLGLGGHSEALLEQFPQTRLVALDRDTEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSGERLARFGERATLVHAVYDELPDVLDRLGIPRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF Sbjct: 122 AQDAPLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A AL GG + Sbjct: 182 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVSALAVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT E++A NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPEQYQPRLKLLTRGAELPTDEEIAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R E Sbjct: 302 AAPARLRGAERIRE 315 >gi|182682489|ref|YP_001830649.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23] gi|182632599|gb|ACB93375.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23] gi|307578769|gb|ADN62738.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa subsp. fastidiosa GB514] Length = 328 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 13 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 72 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 73 AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 131 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 132 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 191 Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 192 LAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 251 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F + S R + + + I + + ++++ N R+ Sbjct: 252 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 310 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 311 RSAVLRVAEK 320 >gi|71898210|ref|ZP_00680384.1| methyltransferase [Xylella fastidiosa Ann-1] gi|71731949|gb|EAO34006.1| methyltransferase [Xylella fastidiosa Ann-1] Length = 340 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 25 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 85 AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203 Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 204 LAELIASVMLRTKSGGCKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F + S R + + + I + + ++++ N R+ Sbjct: 264 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 323 RSAVLRVAEK 332 >gi|326333502|ref|ZP_08199743.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium Broad-1] gi|325948702|gb|EGD40801.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium Broad-1] Length = 336 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 185/324 (57%), Gaps = 9/324 (2%) Query: 16 TIGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 T HVPV+L++++ LL PA G V++D T G GG++ + + GS VI +DRD +A+ Sbjct: 7 TNQKHVPVMLDRIVDLLAPALADGGVLVDCTTGHGGHTEAVLERIPGSRVIGIDRDTYAL 66 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + + ++++ A + ++ D V ++ V V+FDLGVSSMQ+D +RGF++ Sbjct: 67 GIAGERLARFGDRWTGVHAVYDEILDVVAEQGLDEVQAVLFDLGVSSMQLDQRERGFAYA 126 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G +A+DV+N + DLTRIL GEEK A +IAHA+VKRR+ PF T Sbjct: 127 EDAPLDMRMDATRGQTAADVLNTYSAADLTRILRDYGEEKFAKKIAHAVVKRREKQPFTT 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L L+ + + HPA R+FQALR+ VN+E+ L L ++ +A+ GG ++ Sbjct: 187 SGPLVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELGALRTALPASLEAVGVGGRVV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V S+HSLEDRL K+ FA + + F+ +T+ T+ ++ N R+ Sbjct: 247 VESYHSLEDRLTKRAFAEATKLDVPPDLPFVPPDAEPSFRLLTRGAEQATEAEIEENPRA 306 Query: 307 RSAKLRAGMRTVERSIEDDSFVHL 330 S +LRA R RS D Sbjct: 307 ASVRLRAVERVKPRSNPRDKTAKP 330 >gi|220933941|ref|YP_002512840.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7] gi|262825935|sp|B8GMM1|RSMH_THISH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219995251|gb|ACL71853.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7] Length = 314 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 166/308 (53%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L P + LD TFG GG+S + +IALDRDP A + Sbjct: 9 HRAVLLEEAVEALAVRPDGIYLDGTFGRGGHSGRILERLGPDGRLIALDRDPEAEAEAAR 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D E+F + +F LQ +DGV+ DLGVSS Q+D +RGFSF GP Sbjct: 69 RFGD-DERFHFERCSFEMLQQVTDRLGISGRLDGVLLDLGVSSPQLDTPERGFSFMSDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA+ + +AN ++ +L GEE+ A RIA IV+ RQ P + T+ L Sbjct: 128 LDMRMDPESGESAAAWLARANEDEIAWVLKEYGEERFARRIARRIVETRQEMPLERTRQL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V F + ++ HPATRSFQA+RI VN+E+E L + L L GG L V+SFH Sbjct: 188 AELIAEAVPFKERHK-HPATRSFQAIRIRVNDELETLPRCLEQIPALLAPGGRLAVISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F ++ R + +A + + + + ++ N R+RSA Sbjct: 247 SLEDRMVKRFLRDQAEGERLPRGLPVQGDARRGQTLRLVGRAIRAGEAELDQNPRARSAV 306 Query: 311 LRAGMRTV 318 LR R Sbjct: 307 LRVAERLA 314 >gi|330446835|ref|ZP_08310486.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491026|dbj|GAA04983.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 315 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 165/316 (52%), Gaps = 17/316 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A+ Sbjct: 2 SEQFEHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSQLGENGRLYSIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q+ +F + FS ++ Y+ + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AEAQKI---NDPRFEIIHGPFSGMEKYMEARDLIGRVDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA IV+ R++ + Sbjct: 119 MRDGPLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKE 178 Query: 187 --TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + V K+ HPATRSFQA+RI++N+E++E+ L A L G Sbjct: 179 PLTRTRQLASLIAEVSPFKDKHKHPATRSFQAIRIYINSELDEIQTALNGAVNILAPEGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + K + P+Q ++ Sbjct: 239 LSVISFHSLEDRMVKRFIRKESKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQTEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 299 GHNTRARSSVLRLAER 314 >gi|70732392|ref|YP_262148.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5] gi|88909211|sp|Q4K6I5|RSMH_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68346691|gb|AAY94297.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5] Length = 315 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 173/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++ V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVVVQRSFAELGSEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM GISA+ + A V+++ R+ GEE+ + R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGISAAQFIATAPVEEIARVFKEYGEERFSGRMARAVVERREIQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALESLEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F R++ I K ++ ++ N R+RS Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|163752984|ref|ZP_02160108.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1] gi|161326716|gb|EDP98041.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1] Length = 298 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVLL++ + LN V +D TFG GG+S+ + A D+D A+ Sbjct: 1 MEYHNPVLLKETVDGLNIKEDGVYVDVTFGGGGHSKEILNRLGENGKLYAFDQDQDALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F+L F L+ + K VDG++ D GVSS Q D +RGFS + Sbjct: 61 TID-----DSRFTLIHQNFRHLKKFLRFYGIKKVDGILGDFGVSSHQFDVAERGFSLRFE 115 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM G ISA VVN+ + +DL IL + GE + A IA IV R P +TT+ Sbjct: 116 ADLDMRMDQEGEISAYHVVNEYSEEDLRSILSLYGEVRNAKGIAAQIVSARSEEPIKTTE 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +Q+ + + ++ + +QA+RI VN EIE L + L ++ L+ GG L ++S Sbjct: 176 ELRVALQRFLPKHREHK--VLAQIYQAIRIEVNQEIEVLKEFLLQTQELLEKGGRLSLIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK++ + + + P F+ + K+++P+ E++ N R+RSA Sbjct: 234 YHSLEDRLVKRYIRNGLFEGEPEKDFYGRVEVP--FKKV-GKLIIPSNEEIKTNNRARSA 290 Query: 310 KLRAGMR 316 KLR R Sbjct: 291 KLRIAER 297 >gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1] gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1] Length = 289 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 122/306 (39%), Positives = 180/306 (58%), Gaps = 24/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PVLLE+ LL G++ LD T G GG+++ + VI +DRD A+ +E Sbjct: 1 MHTPVLLEESTDLLLENSGELYLDCTLGLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++ + ++++A F+ L + + + VDG++ DLGVS Q+ +RGFSFQ PL Sbjct: 61 NLKEFEGRIAIYKADFADLDEVLRAEGVERVDGILLDLGVSMFQLKS-ERGFSFQIDAPL 119 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A VVN+ + K+L RIL GEE+ + +IA AIV+ R+ P +TT++L+ Sbjct: 120 DMRMDKDQKLTAYKVVNEYSEKELARILWEYGEERLSRKIARAIVQHRREKPIETTKELA 179 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+ ++ R HPAT++FQA+RI VN E+E L L L G L+V+SFH Sbjct: 180 ELVSSLYPARMRHGRTHPATKTFQAIRIEVNRELESLKTALGKTPDLLNPKGRLVVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK FF RS F+ +TKK ++P+QE++A N SRSAKL Sbjct: 240 SLEDRIVKNFFRDRSD----------------AFRILTKKPIIPSQEEIAMNPASRSAKL 283 Query: 312 RAGMRT 317 RAG R Sbjct: 284 RAGERI 289 >gi|284008372|emb|CBA74773.1| S-adenosyl-methyltransferase [Arsenophonus nasoniae] Length = 393 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 113/318 (35%), Positives = 173/318 (54%), Gaps = 19/318 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+ VLL++ + LN + +D TFG GG+S+ +IA+DRDP Sbjct: 77 MADSRFKHISVLLDEAVNGLNIKANGIYVDGTFGRGGHSQLILSRLGSKGRLIAIDRDPH 136 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 AV+ +E + +FS+ +FSQLQ ++ + +DGV+ DLGVSS Q+D +RGF Sbjct: 137 AVAAAEEMI--TDNRFSIKHGSFSQLQTFIAQEGLVGKIDGVLLDLGVSSPQLDDPERGF 194 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182 SF + GPLDMRM +G SA+ + +A+ D+ +L GEE+ A RIA AIV R Sbjct: 195 SFMRDGPLDMRMDPTTGQSAAQWLMKADEADIAWVLKTYGEERFAKRIAKAIVARNHHSA 254 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T + + V K HPATRSFQA+RI++N+E+EE+A+ L + L Sbjct: 255 EEPLTRTKQLAELIAQVSPFKEKHKHPATRSFQAIRIYINSELEEIAKALEGSLNILAPQ 314 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQ 297 G L ++SFHSLEDRLVK+F S + ++ + + + K + PT+ Sbjct: 315 GRLSIISFHSLEDRLVKRFIREHSRGPKVPVGLPLTDVQLKAIGSPILKVLGK--MKPTE 372 Query: 298 EDVAFNRRSRSAKLRAGM 315 ++ N R+RS+ +R Sbjct: 373 REIIENPRARSSVVRFAE 390 >gi|325280032|ref|YP_004252574.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter splanchnicus DSM 20712] gi|324311841|gb|ADY32394.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter splanchnicus DSM 20712] Length = 302 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 167/308 (54%), Gaps = 15/308 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HVPVLL++ + L+ G V LD TFG GG+S K ++ D+D A++ Sbjct: 1 MSEYHVPVLLKESVDGLDIRQGGVYLDLTFGGGGHSGEILKRLDAEGCLLGFDQDEDALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++F F L++++ G DG++ DLGVSS + D RGFSF+ Sbjct: 61 NVPE-----DDRFIFVNHNFRYLRNFMRYYGYEEADGILADLGVSSHEFDEAGRGFSFRF 115 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM+ +A+ V+N + + LT I GE + A R+ IVK R + +T+ Sbjct: 116 EAELDMRMNQRSKLTAATVLNTYDAEQLTAIFRNYGEVENARRLVDLIVKARANQEIKTS 175 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I + K + + +QALRI VN E+E L + ++ A + LK GG L+++ Sbjct: 176 EAFYQIILPCIPKLKEKK--YLAKVYQALRIEVNGELEALEEMMQQAMEVLKPGGRLVII 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK F + + + + ++ + H F+ + +KV+VP++E++ N R+RS Sbjct: 234 TYHSLEDRIVKNFLKAGNAEGKLEKDLVFGHVHHN-FELVNRKVIVPSEEEIVRNPRARS 292 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 293 AKLRIARK 300 >gi|192361777|ref|YP_001983393.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107] gi|263445770|sp|B3PCM8|RSMH_CELJU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190687942|gb|ACE85620.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107] Length = 309 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 166/306 (54%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL + + L P +D TFG GG+S + ++A+D+D A++ + Sbjct: 5 PHVTVLLGEAVEALVSNPEGTYIDGTFGRGGHSALILQHLASEGRLLAIDKDLAAIATAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F++ +F+ L++ ++ V G++ DLGVSS Q+D +RGFSF + G Sbjct: 65 EKFA-TDARFAIAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGFSFMQDG 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA++ VN A+ ++ +L GEE+ A R+A AI+ RQ PF T Sbjct: 124 PLDMRMDQTRGPSAAEWVNTASEDEIAWVLREYGEERFAKRMARAIIAERQKRPFVRTGH 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ + + HPATR+FQA+RI VN E+E+L L A L GG L+V+SF Sbjct: 184 LAEVIKAANPAWEKGK-HPATRAFQAIRIQVNRELEDLEAVLAQAVDVLAPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK+F + + + A K + + ++V N RSRSA Sbjct: 243 HSLEDRLVKRFIRQQEQGDPVPKGLPLREAQLNKTMRSLGKAMKASDQEVEANVRSRSAV 302 Query: 311 LRAGMR 316 +R + Sbjct: 303 MRVAEK 308 >gi|332663143|ref|YP_004445931.1| ribosomal RNA small subunit methyltransferase H [Haliscomenobacter hydrossis DSM 1100] gi|332331957|gb|AEE49058.1| Ribosomal RNA small subunit methyltransferase H [Haliscomenobacter hydrossis DSM 1100] Length = 298 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 163/306 (53%), Gaps = 13/306 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVL + I LN G +DATFG GG++R + + +I D+D A Sbjct: 1 MEYHNPVLASEAIEALNIQAGGTYVDATFGGGGHARLILQALDENARLIGFDQDEDAQRN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + F F + + D VDG++ DLGVSS Q++ +RGFSF+ Sbjct: 61 A---LDDPRFTFVPHNFRFLRRFLRLHDAVEVDGILADLGVSSHQLNEAERGFSFRFDTQ 117 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G SA+DV+ +L + G LGE + + +A AIV+ RQ P ++ DL Sbjct: 118 LDMRMNQQGERSAADVLATYTEAELQNMFGTLGEVRNSRTLAQAIVRERQVRPMRSISDL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ V +N + FQALR+ VN+E+ L L + + LK GG L+++++H Sbjct: 178 LAVLDPLVRGQRNR---YLAQVFQALRMEVNDEVGALQDFLEQSLQVLKPGGRLVIIAYH 234 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK F + + + P F+ IT+K ++P++ ++ N RSRSAK+ Sbjct: 235 SIEDRMVKNFIKTGKVDGEMEQDFYGNITRP--FEVITRKAMLPSEIEIKANPRSRSAKM 292 Query: 312 RAGMRT 317 R ++ Sbjct: 293 RVAVKI 298 >gi|32129733|sp|Q87AF2|RSMH_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263506475|sp|B2I9C0|RSMH_XYLF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 313 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 170/306 (55%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HVPVL + + L LD TFG GG++R + G ++ +D+DP A++ Sbjct: 2 THVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA- 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDM Sbjct: 61 ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ L Sbjct: 121 RMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAEL 180 Query: 195 IQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SF Sbjct: 181 IASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F + S R + + + I + + ++++ N R+RSA Sbjct: 241 HSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAV 299 Query: 311 LRAGMR 316 LR + Sbjct: 300 LRVAEK 305 >gi|290581041|ref|YP_003485433.1| hypothetical protein SmuNN2025_1515 [Streptococcus mutans NN2025] gi|254997940|dbj|BAH88541.1| conserved hypothetical protein [Streptococcus mutans NN2025] Length = 316 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I +L+ P + +DAT G G+S ++ D+D A+ + Sbjct: 7 HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y Q S + F L+ + D +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + +DL R+ GE+K + +IA I R+ +TT + Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA + FQA+RI VN+E+ + L A L G + V++ Sbjct: 187 LAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F + + F + +K ++P +++ N R+ SA Sbjct: 247 FHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNVRELSENNRAHSA 306 Query: 310 KLRAGMRTVE 319 KLR + Sbjct: 307 KLRVIQKIRN 316 >gi|326406411|gb|ADZ63482.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis CV56] Length = 317 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA +VVN + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYETLVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|283769659|ref|ZP_06342555.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219] gi|283103927|gb|EFC05313.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219] Length = 318 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H+ VLLE+ + L P + +DAT G G+S K ++ + D+D A+ Sbjct: 1 MSEHISVLLEESLEALKILPEGIYVDATLGRAGHSVEILKKLTTGHLYSFDKDQQAIEEC 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y E+ +L A FS++ + + + VDG++FDLGVSS Q D GDRGFS++ Sbjct: 61 SLKLKSYAEKVTLIHADFSKMMEKLQSLGVEKVDGILFDLGVSSPQFDQGDRGFSYRFEA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S A VVN + K+L I EE+ A IA+ I + R+ P +TT + Sbjct: 121 RLDMRMDQSQDLDAYQVVNHYSAKELKDIFLKYSEERYAPMIANKICEIRERKPIETTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++++ + + + HPA + FQA+R+ VN+E+ L Q L A LK GG L V+S Sbjct: 181 LVNIVKSCLPAKELRKKKHPAKQVFQAIRMEVNDELGTLEQALNQACSLLKEGGRLAVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHS+EDR+VK + + A F+ + KK ++ + ++ N R+ Sbjct: 241 FHSIEDRMVKTILKKHCEIEKPDPRLPIRFEDIQQADFRLVYKKPILAKEAELENNHRAH 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVIEK 309 >gi|310823496|ref|YP_003955854.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Stigmatella aurantiaca DW4/3-1] gi|309396568|gb|ADO74027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] Length = 301 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 166/300 (55%), Gaps = 6/300 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + LL P GKVILD T G GG++ + G+ VI +DRDP A++ + Sbjct: 5 HQTVLLAEAVQLLQPGVGKVILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLG 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + F F +L D VDGV+ DLGVSS Q+D +RGFSF GPLDMRM Sbjct: 65 GHA-HFQARAGNFGELPRVAADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMG 123 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G +A++++ Q + ++L RI+ LGEE + IA + + P +T + ++ + Sbjct: 124 PEGRTAAELIAQEDERELARIIYELGEESFSRPIARELKRAL---PTRTLEAAEAVKRAV 180 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + RIH AT++FQALR+ VN E+E L L + + LK GG V++FHSLEDR V Sbjct: 181 PRKAWPKRIHVATKTFQALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKV 240 Query: 259 KKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+ F + G + + P F +TKK V ++++V N RSRSA LRA + Sbjct: 241 KEAFRNLVGACRCPPGLPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEKI 300 >gi|254479883|ref|ZP_05093131.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium HTCC2148] gi|214039445|gb|EEB80104.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium HTCC2148] Length = 308 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 164/310 (52%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLL + + L AP +D TFG GG+SR +++ +D+DP A Sbjct: 1 MANMHQTVLLREAVEALVTAPSGAYVDGTFGRGGHSRFLLDQLDDNGHLLGVDKDPVACE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 C + + +FS + +F+ L + DG++ DLGVSS Q+D RGFSF Sbjct: 61 CAAQ-LSSADSRFSFYHGSFADLPQQLQLMDIDAFDGILLDLGVSSPQLDEAGRGFSFMS 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S G +A+ ++ A+ + +L GEE+ A RIA AIVK R+ P TT Sbjct: 120 DGPLDMRMDTSSGETAAQWLSYADTTAIAEVLKEYGEERFAKRIAAAIVKAREVEPLTTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + ++ HPATR+FQA+RI VN E+E+L L S+ LK GG L+V+ Sbjct: 180 AQLAKVVSEANPRWERHK-HPATRAFQAIRIKVNRELEDLGDLLASSLDMLKVGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK++ + + ++A + K + +V N RSRS Sbjct: 239 SFHSLEDRMVKRYMRDMARGEQLPAGVPVTDAALNRRMKLVGKATKASDAEVDENVRSRS 298 Query: 309 AKLRAGMRTV 318 A +R + Sbjct: 299 AVMRVAEKIA 308 >gi|292489365|ref|YP_003532252.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora CFBP1430] gi|292898411|ref|YP_003537780.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198259|emb|CBJ45365.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946] gi|291554799|emb|CBA22629.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora CFBP1430] gi|312173530|emb|CBX81784.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 312 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 175/317 (55%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN P + +D TFG GG+SR + A+DRDP Sbjct: 2 QDTYKHTTVLLDEAVNALNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQ-- 59 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 +F++ FS L +Y + +DG++ DLGVSS Q+D +RGFSF Sbjct: 60 -AIAAAADITDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + +A D+T +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDITFVLKTFGEERFARRIARAIVERNRQQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAAT-PVKDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 ++SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|154706930|ref|YP_001425301.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii Dugway 5J108-111] gi|263446157|sp|A9KET2|RSMH_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154356216|gb|ABS77678.1| S-adenosyl-methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 307 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 11/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVL ++V+ L P + +D TFG GG+S + ++A+D+DP AV+ Sbjct: 1 MEAHKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + +FS+ TF+ LQ D + V+G++ D+GVSS Q++ RGFSF K Sbjct: 61 ANKALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P T Sbjct: 120 DGPLDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 Q+LS ++ K Y + + HPATR+FQA+RIF+N E++EL + L + L GG L V+ Sbjct: 180 QELSDIVIKA-YPQRKIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK+F S + I + + + ++ PT+ ++ N R+RS Sbjct: 239 SFHSLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPL-GSLIRPTEAEIKKNPRARS 297 Query: 309 AKLRAGMR 316 A+LR + Sbjct: 298 ARLRIVEK 305 >gi|329122136|ref|ZP_08250744.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister micraerophilus DSM 19965] gi|327466943|gb|EGF12459.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister micraerophilus DSM 19965] Length = 310 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 HV VL ++I+ + V D T G G+ + G+ +I +D+D A+ Sbjct: 1 MEFKHVTVLRREMISAILTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + M+D + + FS +++ + + ++G +FDLGVSS Q+D +RGFS+ Sbjct: 61 AAELRMKDCTCNLNFVHSNFSNIKNILSEKNLNQINGFIFDLGVSSYQLDEANRGFSYMH 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ + +A DVVN+ + + + I+ GEE+ A RIA IV R++ +TT Sbjct: 121 EGRLDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L S+I+ + ++ N HPA R+FQA+RI VNNE+ + + L +GG + + Sbjct: 181 GELVSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK+ F + + + + H + + + PT E++A N R+ Sbjct: 241 ITFHSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRA 299 Query: 307 RSAKLRAGMRT 317 RSA LR + Sbjct: 300 RSAILRVAEKI 310 >gi|226941977|ref|YP_002797051.1| S-adenosyl-methyltransferase MraW [Laribacter hongkongensis HLHK9] gi|263456276|sp|C1D5M5|RSMH_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226716904|gb|ACO76042.1| MraW [Laribacter hongkongensis HLHK9] Length = 317 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 7/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL++ + L P V +D TFG GG+SR ++A D+DP A++ E Sbjct: 7 HVTVLLQEAVEALAIRPDGVYVDCTFGRGGHSRLVLSRLGPAGRLVAFDKDPQAIAVATE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A + D + VDGV+ DLGVSS QID RGFSF+ PLDMR Sbjct: 67 LDDPRLTIVHEGFAGLDRELDRLGIDKVDGVLMDLGVSSPQIDDASRGFSFRFDAPLDMR 126 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G +A+D + +A+ ++ ++ GEE+ A+ IA AIV R F TT + + Sbjct: 127 MDTTRGETAADWLARADEAEIRTVIRDYGEERFAASIARAIVANRLEGQFLTTTGELAAL 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ PATR+FQA+RIF+N E++EL L A + L+ GG L+V++FHSLED Sbjct: 187 CARCVRTREKGQDPATRTFQAIRIFINRELDELQAVLPQAVRRLRPGGRLVVIAFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F S R + ++ + + K V E +A N R+RSA +R Sbjct: 247 RIVKLFLRDASSPPELPRGLPVRAADLPEPPLRLV-GKPVREGDEQLARNPRARSAIMRV 305 Query: 314 GMRTV 318 R+ Sbjct: 306 AERSA 310 >gi|125624479|ref|YP_001032962.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|263458159|sp|A2RLT4|RSMH_LACLM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460329|sp|Q02ZY9|RSMH_LACLS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|124493287|emb|CAL98255.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] Length = 317 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 163/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKV 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S SA +VVN + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQSQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKSIFKEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|330957978|gb|EGH58238.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 313 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 172/318 (54%), Gaps = 17/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+SA H+ VLLE+ + L LD TFG GG+SR ++ D Sbjct: 1 MNSAFT-----HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 +DP A++ GQ + +F + Q +F++L V ++ V G++ DLGVSS Q+D Sbjct: 56 KDPQAIATGQA-LAAEDGRFVIVQRSFAELGSEVQERGLAGKVSGILLDLGVSSPQLDDP 114 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF GPLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR Sbjct: 115 ERGFSFMNDGPLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRR 174 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + PF+ T DL+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A L+ Sbjct: 175 EIQPFERTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDTLE 233 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK F + R + I K + Sbjct: 234 IGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRDLPIQFKPFEPKIKIHGKAQFASDA 293 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N RSRSA +R + Sbjct: 294 ETKANPRSRSAVMRVAEK 311 >gi|294012787|ref|YP_003546247.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S] gi|292676117|dbj|BAI97635.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S] Length = 326 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 134/319 (42%), Positives = 195/319 (61%), Gaps = 13/319 (4%) Query: 9 MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 MS++ H H+PVL+++V+ L PG+V +D TFGAGGYS + G+ V A DR Sbjct: 1 MSASPDHAQSPERHIPVLIDEVLDALAINPGEVHVDGTFGAGGYSGAMADRGARVFAFDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 DP A+ GQ + +L FS++++ + ++ V GV D+GVSSMQ+D +R Sbjct: 61 DPDAIREGQALAEEKG--VTLIAGEFSRMEELLAERGVTSVSGVTLDIGVSSMQLDRPER 118 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSFQ GPLDM MS SG+SA+D +N A +++ IL GEE ++ R+A AIV+ R Sbjct: 119 GFSFQGDGPLDMTMSRSGMSAADFLNNAPEQEIADILYRYGEEPRSRRVAKAIVEAR--- 175 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P + T L+++++K + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG Sbjct: 176 PLERTGQLANVVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVA 301 L VV+FHSLEDR+VK+F +RSG + +P F+ K V P ++A Sbjct: 236 RLAVVTFHSLEDRIVKQFLRNRSGSEASGSRHLPQRQSGPAPTFERPA-KAVRPGMVELA 294 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSA LR+ +RT Sbjct: 295 RNPRSRSATLRSAVRTSAP 313 >gi|186685061|ref|YP_001868257.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102] gi|262824674|sp|B2J183|RSMH_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|186467513|gb|ACC83314.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102] Length = 298 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 160/300 (53%), Gaps = 24/300 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+ VL +VI L PG LD T G GG+SR + + V A+D+D A+ + Sbjct: 18 HISVLGREVIEGLAVRPGGHYLDVTVGGGGHSRLILEAAADVRVTAVDQDEDALVAANKN 77 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + +Y ++ + F+ + P DG++ DLGVSS +D +RGFSF+++ LDMRM Sbjct: 78 LAEYSDRIQFIYSNFADYE--FPPNTFDGILADLGVSSYHLDQAERGFSFRQAANLDMRM 135 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 ++A+DV+N + +L I GEE+ + RIA IV+RR TT+ ++ Sbjct: 136 DRGRSLTAADVINNWDEAELADIFFKYGEERLSRRIARRIVERRPLH--TTTELADAIAS 193 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + RIHPATR FQALRI VN+E++ L L A AL GG + ++SFHSLEDR Sbjct: 194 SVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFLDKAPNALVPGGRIAIISFHSLEDR 253 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK + + + +TKK ++ +E+++ N RSRSAKLR + Sbjct: 254 PVKHGLRNS-----------------PLLKVLTKKPIIAQEEEISNNPRSRSAKLRIAEK 296 >gi|237709504|ref|ZP_04539985.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA] gi|229456560|gb|EEO62281.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA] Length = 304 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 8 YHIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65 Query: 76 ETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D + F + S Y + VD ++ DLGVSS D +RGFSF+ G LD Sbjct: 66 -IVSDSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G++A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 125 MRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIITIGDFLE 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HSL Sbjct: 185 VIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 243 EDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLRI 300 Query: 314 GMR 316 + Sbjct: 301 AEK 303 >gi|91786965|ref|YP_547917.1| S-adenosyl-methyltransferase MraW [Polaromonas sp. JS666] gi|123060224|sp|Q12EM3|RSMH_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91696190|gb|ABE43019.1| methyltransferase [Polaromonas sp. JS666] Length = 305 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 167/307 (54%), Gaps = 11/307 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL + IA L+ P +DATFG GG+SR + A D+D A+ Sbjct: 2 QDTWTHRTVLLNEAIAALHINPDGHYIDATFGRGGHSRLLLSQLSPQGRLTAFDKDLDAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Q +FS+ F L P GV+ DLGVSS QID RGFSF+ G Sbjct: 62 AEAQTI---TDPRFSIRHEGFMHLGQL-PAASAAGVLMDLGVSSPQIDNPVRGFSFRSEG 117 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G S ++ + A+++ + ++ GEE+ A ++A AI +RRQ T Sbjct: 118 PLDMRMDTTRGQSVAEWLADASIETMAEVIREYGEERFAQQVAKAIDRRRQERGPLRTTA 177 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + ++ PATR+FQALRIF+N E+EEL Q L ++ K L+ GG L+V+SF Sbjct: 178 ELAEVVAGAVKTREPGKDPATRTFQALRIFINAELEELQQALEASLKVLQPGGRLVVISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A +S +V R + +++ + + P++E++A N RSRSA Sbjct: 238 HSLEDRIVKQFIAGQSREV-FDRRAPFAAPKAMRLKALGR--IKPSEEEIAANPRSRSAV 294 Query: 311 LRAGMRT 317 +R RT Sbjct: 295 MRVAERT 301 >gi|15672847|ref|NP_267021.1| hypothetical protein L87561 [Lactococcus lactis subsp. lactis Il1403] gi|20139138|sp|Q9CH73|RSMH_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12723794|gb|AAK04963.1|AE006321_1 hypothetical protein L87561 [Lactococcus lactis subsp. lactis Il1403] Length = 317 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA +VVN + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|188584364|ref|YP_001927809.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001] gi|263456461|sp|B1Z8U3|RSMH_METPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|179347862|gb|ACB83274.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001] Length = 351 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 136/309 (44%), Positives = 183/309 (59%), Gaps = 12/309 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +D TFGAGGY+R+ + G VIA+DRDP A+ G + + + L Q F L Sbjct: 38 GLAVDGTFGAGGYTRALLESGPDMRVIAIDRDPTAIRAGADLVEGAGGRLRLVQGRFGDL 97 Query: 96 QDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 + D VV D+GVSSMQ+D RGFSF++ GPLDMRM G SA+D+VN Sbjct: 98 DTLLADQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPSAADLVNGEE 157 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 L IL GEE+++ +A AIV+ R+ AP TT L+ LI V + IHPATR Sbjct: 158 ESTLADILYHFGEERRSRAVARAIVEARRRAPIATTAQLADLIAGVVRPEPGSPIHPATR 217 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 SFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLEDR+VK+FF++RSG+ Sbjct: 218 SFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLEDRIVKQFFSARSGRAAQA 277 Query: 273 RHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL 330 +P PA F+ +TK V+P++ + N R+RSAKLRAG RT + L Sbjct: 278 SRHLPGVERPAPKSFRLVTKGPVLPSEAETEVNPRARSAKLRAGERTDGPAPPP-----L 332 Query: 331 PRLPTLSQF 339 + TL+ Sbjct: 333 SAIETLASL 341 >gi|212692815|ref|ZP_03300943.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855] gi|212664604|gb|EEB25176.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855] Length = 304 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 8 YHIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65 Query: 76 ETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D + F + S Y + VD ++ DLGVSS D +RGFSF+ G LD Sbjct: 66 -IVSDSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G++A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 125 MRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSHKLASTIVKARGVKQIITIGDFLE 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HSL Sbjct: 185 VIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAAAKALKPGGRLVVITYHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 243 EDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLRI 300 Query: 314 GMR 316 + Sbjct: 301 AEK 303 >gi|270157407|ref|ZP_06186064.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968] gi|289164199|ref|YP_003454337.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Legionella longbeachae NSW150] gi|269989432|gb|EEZ95686.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968] gi|288857372|emb|CBJ11200.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Legionella longbeachae NSW150] Length = 308 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+S+ + + A+D+D A+ Sbjct: 1 MATHQSVLLHESITGLAIKSDGIYFDGTFGRGGHSKEILRFLNEEGRLYAIDKDLDAIMY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E D ++F +FQ ++++++ + + VDG++ DLGVSS Q+D +RGFSF + Sbjct: 61 AKEHF-DQDKRFHIFQGSYAKIEQFATEAGVLGMVDGILLDLGVSSPQLDNPERGFSFMQ 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +SA+ VN+A ++T + + GEE+ A RIA AIV R AP TT Sbjct: 120 QGPLDMRMDRSQPMSAARFVNEAETDEMTSVFKLYGEERFAGRIAKAIVTARNIAPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++++ + ++ HPATR FQA+RI+VN E+ +L + L L G L+V+ Sbjct: 180 LQLAEIVKEANPKWEKHK-HPATRVFQAIRIYVNQELNDLERCLEQCIHVLAPKGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F ++ I F+ I K ++P Q +++ N R+R Sbjct: 239 SFHSLEDRIVKQFMKNKEEGAKPPPEVPIRYKELKTNFKRI-GKAIMPQQNEISENVRAR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|170738613|ref|YP_001767268.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46] gi|263456469|sp|B0UFI0|RSMH_METS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168192887|gb|ACA14834.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46] Length = 337 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 143/309 (46%), Positives = 194/309 (62%), Gaps = 8/309 (2%) Query: 18 GDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL +V +L G V++D TFGAGGYSR+ VIA+DRDP AV+ G Sbjct: 4 APHIPVLLAEVRGVLRLGEGPGVVVDGTFGAGGYSRALLAADPDLRVIAIDRDPTAVAAG 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 QE + L Q F L V + VDGVV D+GVSSMQ+D +RGFSF+ G Sbjct: 64 QELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSMQLDRAERGFSFRADG 123 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM +G SA+D+VN A +L I+ GEE+++ +A AI++ R+ AP TT L Sbjct: 124 PLDMRMEGAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARAILEARRRAPIATTGAL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FH Sbjct: 184 AEIVAGVVRAEPGSGIHPATRTFQALRIAVNDELGELNRALHAAERILRPGGRLAVVTFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+FF++RSG+ ++ +P P F +TK V P++ + A N R+RSA Sbjct: 244 SLEDRIVKQFFSARSGRAVSASRHLPMAERPVPRSFTLVTKGPVGPSEAEAAANPRARSA 303 Query: 310 KLRAGMRTV 318 KLRAG RT Sbjct: 304 KLRAGERTD 312 >gi|303228441|ref|ZP_07315274.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-134-V-Col7a] gi|303230798|ref|ZP_07317545.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-049-V-Sch6] gi|302514558|gb|EFL56553.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-049-V-Sch6] gi|302516943|gb|EFL58852.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-134-V-Col7a] Length = 310 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 155/309 (50%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 +HV VLL + + + P + +D T G G++ + +I LD+D A++ Sbjct: 1 MEFNHVSVLLNETVDSVVTNPDGIYVDCTLGGAGHAHAVGERLSSQGMIIGLDQDEDALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D Q FS L+ + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 61 VARQRLSDLTCQVMTIPTNFSDLKHALEEQGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A VVN+ L +I+ GEE+ A RI IV R TT Sbjct: 121 DGPLDMRMDKEAPITAEIVVNEYESDKLLQIIRDYGEERWAKRIVEFIVAARNEKRITTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L S+I+K + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 181 GELVSIIKKAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGRIGV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + H K + P+ +V N RSR Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPELPVCVCHHKAVLKAKNKAIEPSAGEVEMNPRSR 300 Query: 308 SAKLRAGMR 316 SAKLR G++ Sbjct: 301 SAKLRVGIK 309 >gi|302344989|ref|YP_003813342.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC 25845] gi|302149179|gb|ADK95441.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 13/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I H+PVLL + I LN V +D TFG GG+SR S++ + D+D Sbjct: 2 IKTAECYHIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEDSHLYSFDQDAD 61 Query: 70 AVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRG 124 A + ++F+ ++ F L++++ V + + DLGVSS D RG Sbjct: 62 AEQNIDNMGLSDEQVDRFTFVRSNFRYLKNWMRYYDVGYIDGLLADLGVSSHHFDDETRG 121 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ GI+A+D++N + + L IL + GE KQ+ RIA AIVK R Sbjct: 122 FSFRFEAPLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQK 181 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++TT DL + I+ +F + + FQALRI VN+E++ L + L +A + L+ GG Sbjct: 182 TYKTTNDLLTTIEP--FFQRAREKKDMAKMFQALRIEVNHEMDALKEMLMAATELLRPGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK S + + + P F+ + KV+ + ++ N Sbjct: 240 RLSVITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITASNDEQERN 297 Query: 304 RRSRSAKLRAGMRTVER 320 RSRSAKLR + Sbjct: 298 PRSRSAKLRIAEKKANE 314 >gi|325264796|ref|ZP_08131525.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] gi|324030088|gb|EGB91374.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] Length = 315 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 169/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L P + +DAT G GG++ C + I +D+D A+ Sbjct: 9 HTSVLLEETVDGLAVKPDGIYVDATLGGGGHAFEVCSKLSSKGSFIGIDQDAAAIEAASA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+ E+ ++ ++ + ++ + + VDG+V DLGVSS Q+D +RGFS++ PL Sbjct: 69 RLLDFGERVTIIRSNYCDMKPRLHEIGIDKVDGIVLDLGVSSYQLDTAERGFSYRTDAPL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN + DL R++ GE++ A IA IV R P +TT L+ Sbjct: 129 DMRMDQRQMMTAKDIVNDYSESDLYRVIRDYGEDRFAKNIAKHIVIARGKGPIETTGQLN 188 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HP+ R++QA+RI +N E++ L + L + LK GG + +++FH Sbjct: 189 EIIRKAIPMKIQKTSGHPSKRTYQAIRIELNRELDVLRETLDDMIELLKPGGRICIITFH 248 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F H + + + IT+K ++P++E++ N RS+SAK Sbjct: 249 SLEDRIVKSAFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEENSRSKSAK 308 Query: 311 LRAGMR 316 LR R Sbjct: 309 LRIFER 314 >gi|300726283|ref|ZP_07059736.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14] gi|299776480|gb|EFI73037.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14] Length = 318 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 110/320 (34%), Positives = 169/320 (52%), Gaps = 20/320 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I HVPVLLE+ + LN PG + +D TFG GG+S +++ + D+D Sbjct: 2 IKTAETYHVPVLLEQTVNGLNIQPGGIYIDVTFGGGGHSSKILSCLDSQAHLYSFDQDAD 61 Query: 70 A---VSCG------QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQ 117 A + ++ +F+ ++ F +++++ VD + + DLGVSS Sbjct: 62 AENNIYYAEAGSNEKDHRFIDDPRFTFVRSNFRYIKNWMRYYHVDYIDGLLADLGVSSHH 121 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D DRGFSF+ PLDMRM+ ++A+D+VN L I + GE K + +IA+A+ Sbjct: 122 FDDKDRGFSFRFDSPLDMRMNKRADMTAADIVNNYPESQLADIFYLYGELKNSRKIANAL 181 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 V+ RQ+ TTQD + F + R FQALRI VN+E++ L + L SA Sbjct: 182 VRYRQNQKILTTQDFIKATEP--LFKREKEKKDMARLFQALRIEVNHEMDALKEMLNSAT 239 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L+ GG L V+++HSLEDR+VK S + + V+ + P ++ I KV++P Sbjct: 240 ELLRPGGRLSVITYHSLEDRIVKNVMKSGNPEGKIVKDFFGKSETP--YKLINNKVIIPD 297 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 QE+ N RSRSAKLR + Sbjct: 298 QEEQENNPRSRSAKLRIAEK 317 >gi|239907971|ref|YP_002954712.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1] gi|263446299|sp|C4XK86|RSMH_DESMR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239797837|dbj|BAH76826.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1] Length = 324 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 122/308 (39%), Positives = 169/308 (54%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL +VI LL PG ILDAT G GG+SR + V+ LDRD A+S Sbjct: 7 HKPVLLREVIELLGIRPGMKILDATVGLGGHSRGMLEAAGGEGQVLGLDRDREALSEAGR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L + S+ + + + VD + D G+SS+Q+D +RGF F GPL Sbjct: 67 WLAPYGDRVRLVRTRSSRFPAVLAEAGWEKVDAALLDAGMSSLQLDDPERGFGFLHDGPL 126 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G +A +VN A+ L I+ GE+ QA RIA AIV R+ TT L Sbjct: 127 DMRMGAEDGGETAEGLVNLASYARLCEIIREYGEDPQAGRIARAIVSVREKEAITTTARL 186 Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ + R HPATR+FQALR+ VN E+ EL L++ L GG + V+S Sbjct: 187 AEVVWQAYPAKWRATARQHPATRTFQALRMAVNEELAELEAFLKAIPDHLAPGGRVAVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK+ F + + + R ++ H A + +TKK V+ +E+V N R+RS Sbjct: 247 FHSLEDRLVKRAFRAEATDCICPREQVVCVCGHRARLRILTKKPVMAGEEEVRDNSRARS 306 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 307 AKLRVAER 314 >gi|281491359|ref|YP_003353339.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis KF147] gi|281375100|gb|ADA64618.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis KF147] Length = 317 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 163/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTDGHLYSFDQDETAHENAKV 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA +VVN+ + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQNQTLSAYEVVNEYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|237724902|ref|ZP_04555383.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D4] gi|265754710|ref|ZP_06089762.1| methylase MraW [Bacteroides sp. 3_1_33FAA] gi|229436640|gb|EEO46717.1| S-adenosyl-methyltransferase MraW [Bacteroides dorei 5_1_36/D4] gi|263234824|gb|EEZ20392.1| methylase MraW [Bacteroides sp. 3_1_33FAA] Length = 304 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVPVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 8 YHVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKN-- 65 Query: 76 ETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D + F + S Y + VD ++ DLGVSS D +RGFSF+ G LD Sbjct: 66 -IVSDSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ GI+A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 125 MRMNKRAGITAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIVTIGDFLE 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HSL Sbjct: 185 VIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 243 EDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLRI 300 Query: 314 GMR 316 + Sbjct: 301 AEK 303 >gi|294635001|ref|ZP_06713518.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685] gi|291091600|gb|EFE24161.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685] Length = 314 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 170/317 (53%), Gaps = 18/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 H VLL++ +A LN + +D TFG GG+SR +IA+DRDP Sbjct: 2 SENFQHKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDP--- 58 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +FS+ FS L +YV + +DG++ DLGVSS Q+D +RGFSF Sbjct: 59 QAIAAAAQINDARFSIVHGPFSALAEYVEELGLVGRIDGILLDLGVSSPQLDDPERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA+D + QA +D+ +L GEE+ A RIA AIV+R ++ Sbjct: 119 MRDGPLDMRMDPSRGLSAADWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEAPL 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + + K HPATRSFQA+RI++N+E++E+ + L A L G L Sbjct: 179 TRTRELAALISEASPFKEKHKHPATRSFQAIRIYINSELDEIERALEGALAVLAPAGRLS 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F S + + + A +++ K+ +P +++VA Sbjct: 239 VISFHSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEQEVA 296 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR R Sbjct: 297 NNPRARSSVLRVAERIA 313 >gi|94994874|ref|YP_602972.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10750] gi|94548382|gb|ABF38428.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS10750] Length = 337 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 15/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + +DG+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K ++P+ ++ N+R+ SAKLR + Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKI 335 >gi|258593046|emb|CBE69357.1| S-adenosyl-dependent methyl transferase [NC10 bacterium 'Dutch sediment'] Length = 301 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 172/308 (55%), Gaps = 21/308 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74 G H+PVLLE+ +A L P PG LDAT G GG++ + + +DRD A++ Sbjct: 5 GRHLPVLLEETVAFLQPRPGGCYLDATVGLGGHAETLLIESAPTGCLCGIDRDVEALALA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + L F+ L + DG++FDLG SS Q+D RGFSF + G Sbjct: 65 KGRLGQFGSRVELRYGDFASLGAIAAENEWRPFDGILFDLGFSSFQMDNASRGFSFMRDG 124 Query: 132 PLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM G SA++++ + ++L R+L GEE+ A RIA IV+ R++ P +T Sbjct: 125 LLDMRMDRQGCDKSAAELLARIPERELARLLQDYGEERWAKRIAARIVEARRTQPLTSTA 184 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ V RIH ATR+FQALRI VN+E+ L +GL++A + L GG + V+ Sbjct: 185 QLARLVAAAVPRRAWPRRIHVATRTFQALRIAVNDELARLRRGLQNAVELLAVGGRICVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+ F + P + +TK+ VVPT+ + N R+RS Sbjct: 245 SFHSLEDRIVKEVFRGWARS------------EPPRVRLLTKRPVVPTERESEINPRARS 292 Query: 309 AKLRAGMR 316 AKLRA R Sbjct: 293 AKLRAAER 300 >gi|71275129|ref|ZP_00651416.1| methyltransferase [Xylella fastidiosa Dixon] gi|71900702|ref|ZP_00682825.1| methyltransferase [Xylella fastidiosa Ann-1] gi|170731118|ref|YP_001776551.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M12] gi|71163938|gb|EAO13653.1| methyltransferase [Xylella fastidiosa Dixon] gi|71729523|gb|EAO31631.1| methyltransferase [Xylella fastidiosa Ann-1] gi|167965911|gb|ACA12921.1| S-adenosyl-methyltransferase [Xylella fastidiosa M12] Length = 340 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 25 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 85 AMA-ERVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203 Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 204 LAELIASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F + + R + + + I + + ++++ N R+ Sbjct: 264 VISFHSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 323 RSAVLRVAEK 332 >gi|29653474|ref|NP_819166.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493] gi|153207124|ref|ZP_01945903.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat Q177'] gi|161830127|ref|YP_001596084.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331] gi|165918373|ref|ZP_02218459.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334] gi|212219401|ref|YP_002306188.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuK_Q154] gi|42559465|sp|Q83F35|RSMH_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446160|sp|A9NA25|RSMH_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447414|sp|B6J5L7|RSMH_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29540736|gb|AAO89680.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493] gi|120576785|gb|EAX33409.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat Q177'] gi|161761994|gb|ABX77636.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331] gi|165917879|gb|EDR36483.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334] gi|212013663|gb|ACJ21043.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuK_Q154] Length = 307 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 11/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVL ++V+ L P + +D TFG GG+S + ++A+D+DP AV+ Sbjct: 1 MEAHKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + +FS+ TF+ LQ D + V+G++ D+GVSS Q++ RGFSF K Sbjct: 61 ANKALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P T Sbjct: 120 DGPLDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 Q+LS ++ K Y + + HPATR+FQA+RIF+N E++EL + L + L GG L V+ Sbjct: 180 QELSDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK+F S + I + + + ++ PT+ ++ N R+RS Sbjct: 239 SFHSLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPL-GSLIRPTEAEIKKNPRARS 297 Query: 309 AKLRAGMR 316 A+LR + Sbjct: 298 ARLRIVEK 305 >gi|86132600|ref|ZP_01051193.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134] gi|85816842|gb|EAQ38027.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134] Length = 298 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 163/306 (53%), Gaps = 13/306 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVLL++ + L+ P V +D TFG GG+SR + D+DP A Sbjct: 1 MDYHNPVLLKETVDGLDIKPDGVYVDVTFGGGGHSREILSRLGENGKLYGFDQDPDA--- 57 Query: 74 GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Q D + F + + K VDG++ D GVSS Q D +RGFS + Sbjct: 58 AQNVPDDSRFVLIPENFRFIKRFLRFHGHKKVDGILGDFGVSSHQFDVAERGFSTRFESD 117 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN +DL ++ GE + A ++A AIV R +AP +T++ L Sbjct: 118 LDMRMNQKDDLSAYNVVNDYAEEDLRQVFWQYGELRNAPKLASAIVVARGNAPIKTSEQL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + ++I + +QA+RI VN EIE L + L E+ L+ GG + ++S+H Sbjct: 178 KKVLAAFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEQLLEPGGRISLISYH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK++ + + + M + P F+ + + ++VP++E++ N R+RSAKL Sbjct: 236 SLEDRLVKRYIRNGLFEGEPEKDMYGNFEVP--FKKVGR-LIVPSKEEIKSNNRARSAKL 292 Query: 312 RAGMRT 317 R + Sbjct: 293 RIAAKV 298 >gi|313665282|ref|YP_004047153.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50] gi|312950000|gb|ADR24596.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50] Length = 309 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 155/310 (50%), Gaps = 12/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H+PVLL++ I LN P + +D T G G++ + S + A+D+D A+ Sbjct: 1 MDKHIPVLLDESIKYLNIKPNGIYVDCTLGRAGHASEILQRLSQNGFLYAIDQDKVAIDQ 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + F L Q FS L VDG+++DLGVSS Q+D G RGFS++ Sbjct: 61 AKEKLEKISNNFFLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQLDIGSRGFSYKID 120 Query: 131 GPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + S +VNQ + IL GEE A IA IV T Sbjct: 121 GPLDMRMDITNNSLTADIIVNQYPETQIADILFKYGEESFAKNIAKKIV--LSRPINSTL 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + + + + HPA ++FQALRIF+NNE+ L L+ A + L + G + V+ Sbjct: 179 KLVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALELLNSKGRICVI 238 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLE+++VK F + + + ++ + F+ + KK + P+ ++ N RS Sbjct: 239 TFHSLEEKIVKNIFNNSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNYRS 298 Query: 307 RSAKLRAGMR 316 SAKL + Sbjct: 299 HSAKLWVIEK 308 >gi|15675533|ref|NP_269707.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes M1 GAS] gi|19746583|ref|NP_607719.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS8232] gi|21910939|ref|NP_665207.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315] gi|28895371|ref|NP_801721.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes SSI-1] gi|71904072|ref|YP_280875.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS6180] gi|71911181|ref|YP_282731.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS5005] gi|94988995|ref|YP_597096.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS9429] gi|94990995|ref|YP_599095.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10270] gi|94992888|ref|YP_600987.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS2096] gi|306826911|ref|ZP_07460211.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC 10782] gi|13622733|gb|AAK34428.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19748798|gb|AAL98218.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|21905146|gb|AAM80010.1| putative S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315] gi|28810617|dbj|BAC63554.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71803167|gb|AAX72520.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71853963|gb|AAZ51986.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS5005] gi|94542503|gb|ABF32552.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS9429] gi|94544503|gb|ABF34551.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS10270] gi|94546396|gb|ABF36443.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS2096] gi|304430929|gb|EFM33938.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 15/327 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68 Query: 60 --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + +DG+++DLG Sbjct: 69 EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K ++P+ ++ N+R+ SAKLR + Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKI 335 >gi|313893629|ref|ZP_07827197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158 str. F0412] gi|313441773|gb|EFR60197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158 str. F0412] Length = 310 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72 +H VLL + + + P + +D T G G++ + +I LD+D A+S Sbjct: 1 MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGKMLDPEGMIIGLDQDEDALS 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D Q FS L++ + + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 61 VARQRLSDLNCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV RQ TT Sbjct: 121 DGPLDMRMDKDAPLTAEEIVNEYDAEQLLQIIRDYGEERWAKRIVEFIVNARQENRITTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 181 GELVRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + + K + P+ ++ N R+R Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPELPMCACNHKAVVKAKNKAIEPSAGEIEVNPRAR 300 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 301 SAKLRVAIK 309 >gi|326334986|ref|ZP_08201186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692791|gb|EGD34730.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 314 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 160/312 (51%), Gaps = 17/312 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71 H+PVLL + I L P +DATFG GG+SR+ +IA D+DP A Sbjct: 2 QDNSYHIPVLLSQTIEGLALNPEGTYVDATFGGGGHSRAILAQLSHNGRLIAFDQDPQAQ 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E E+F L F ++ ++ V+GV+ D GVSS Q D RGFS + Sbjct: 62 GNIIE-----DERFMLIPQNFRYIKRFLRFYGVRQVEGVLADFGVSSYQFDTAQRGFSTR 116 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ SA +VVN +L+ +L GE + A +IA ++ +RQ +P +T Sbjct: 117 FEAPLDMRMNQEQPLSAFEVVNTYTESELSELLYRYGELRNAKQIARTLIAQRQISPIRT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL + +Q + K N+ +QA+RI VN E+ L + L + +K GG + + Sbjct: 177 TMDLRNAVQAFLPKGKENK--VLAPLYQAIRIEVNQELAALEEFLLQLPEVVKQGGRIAL 234 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDRLVK+F + + P F I K +VP+ E++A N R+R Sbjct: 235 ISYHSLEDRLVKRFIRDGQCSGEPQKDFYGNTFPP--FVKI-GKPIVPSPEEIALNNRAR 291 Query: 308 SAKLRAGMRTVE 319 SAKLR RT Sbjct: 292 SAKLRIAERTEN 303 >gi|139437204|ref|ZP_01771364.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC 25986] gi|133776851|gb|EBA40671.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC 25986] Length = 321 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 167/320 (52%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 M I H PV+L +V+ L G V+ D T G G+S ++ +D Sbjct: 1 MERGILTQEYRHEPVMLGEVLESLRLKSGSVVCDCTLGGAGHSVKMAAQVGETGLLLGVD 60 Query: 66 RDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +D A+ + L + F L + + GVDG +FDLGVSS Q+D Sbjct: 61 QDDMALEAAGARLDREVPGVPHQLLKGNFGDLDELLCSAEVPGVDGFLFDLGVSSPQLDI 120 Query: 121 GDRGFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFS+ + PLDMRM + ++V+N N DL RIL + GEEK AS+IA IV+ Sbjct: 121 PGRGFSYNEDAPLDMRMDPGNNTLNAAEVINTYNEHDLARILRVYGEEKFASQIAREIVR 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RR+ P +TT +I+ + + + + HPA +SFQA+RI VN+E++ L +GL +A + Sbjct: 181 RREQEPIETTGQFVEIIKAGIPAAARRHGGHPAKKSFQAIRIEVNHELDVLERGLDAATR 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR+VK F S + + + + IT+K +V Sbjct: 241 WLNPGGRICVISYHSLEDRIVKNHFKEMSQGCTCPPEIPVCVCGNVPILKVITRKPLVAQ 300 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++V N R+RSAK+R R Sbjct: 301 PDEVERNPRARSAKIRVAQR 320 >gi|219849709|ref|YP_002464142.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485] gi|263445784|sp|B8G5X3|RSMH_CHLAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219543968|gb|ACL25706.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485] Length = 301 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 176/310 (56%), Gaps = 22/310 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 HVPV++ +V+A L P PG +DAT G GG++ + + G ++ +D DP A+ Sbjct: 4 TFQHVPVMVAEVVAALAPRPGGRYIDATVGGGGHALAVLQAARPGGRLLGIDADPAALVA 63 Query: 74 GQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128 + + + E L +F+ L + G ++FDLGVSS Q+D +RGFSF Sbjct: 64 TADRLAEAGLREHAVLCHGSFADLAVIAGETGFINVDGILFDLGVSSYQLDTPERGFSFA 123 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMR+ G +A+D+VN + ++L ++ GEE A RIA AIV+RR++ PFQ Sbjct: 124 ADGPLDMRLDPTQGPTAADLVNTLSERELADVIFQYGEEHAARRIARAIVERRRTQPFQR 183 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL+++I + V + RIHPATR+FQALRI VN E++ LA L A L GG L+V Sbjct: 184 TADLAAVIARVV-GGRRGRIHPATRTFQALRIAVNRELDRLAAALPQAVHLLAPGGRLVV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F + + TKK V T ++VA N R+R Sbjct: 243 ISFHSLEDRIVKQFMRAEAEGAT------------PRLVINTKKPVAATDDEVATNPRAR 290 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 291 SAKLRVATRI 300 >gi|237747024|ref|ZP_04577504.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS] gi|229378375|gb|EEO28466.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS] Length = 321 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL + + L+ V LD TFG GG+SR + ++A D+DP AV Sbjct: 8 HDSVLLNEAVDALDISGKRADGVYLDGTFGRGGHSRLILERLGEKGRLVAFDKDPEAVRV 67 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +F + TF+ L++ + ++ + DG++ DLGVSS Q++ RGFSF+ Sbjct: 68 AKEI---GDPRFEIVHGTFAALEEVLEERKIKAIDGILLDLGVSSPQVEDAKRGFSFRLD 124 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM G+SA + + K + ++ GEE+ A +IA IV R P +T+ Sbjct: 125 GPLDMRMDSTRGMSAREWLAVETEKKIAEVIYQYGEERFAFQIAKEIVAGRAIQPIDSTK 184 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + V + + +PATR+FQA+RI+VN E+EEL GL A + L G + V+S Sbjct: 185 QLAQIVARAVKTFEKGK-NPATRTFQAIRIYVNRELEELEIGLEKAWQRLGLEGRMSVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+FFA ++ M R + S + + K + P+ +V N R+R Sbjct: 244 FHSLEDRIVKRFFAGKATVKMPDRRLPIRASELPRPEMKLLGK--IKPSAAEVKRNVRAR 301 Query: 308 SAKLRAGMRTV 318 SA LR R Sbjct: 302 SAILRVATRVA 312 >gi|15837392|ref|NP_298080.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa 9a5c] gi|20139246|sp|Q9PF88|RSMH_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9105686|gb|AAF83600.1|AE003919_11 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 313 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HVPVL + + L LD TFG GG++R ++ G ++ +D+DP A++ Sbjct: 2 THVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQLLGPGGRLLVMDKDPEAIAMA- 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDM Sbjct: 61 ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFVKDGPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ L Sbjct: 121 RMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAEL 180 Query: 195 IQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SF Sbjct: 181 IASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F + + R + + + I + + ++++ N R+RSA Sbjct: 241 HSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAV 299 Query: 311 LRAGMR 316 LR + Sbjct: 300 LRVAEK 305 >gi|284045229|ref|YP_003395569.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684] gi|283949450|gb|ADB52194.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684] Length = 314 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 169/312 (54%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 G H+PVL ++I LL+P PG+V++D T G GG++R +I +DRDP A Sbjct: 1 MTGIHIPVLAGELIELLDPQPGQVVVDCTLGGGGHARLVAGRIGPTGTLIGIDRDPIAEE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + +A F+Q + D V DLG+SSMQ+D +RGFS+ Sbjct: 61 RFAELTAEVSCTTRFIRADFAQGLEQLAREGVQADLVYMDLGMSSMQVDTWERGFSYAYD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +VVN + + L R+L GEE+ AS+IA AI + R+ P +TTQ Sbjct: 121 APLDMRMDSEQELTAHEVVNGWDERRLARLLKEYGEERYASKIARAIARTREQQPIETTQ 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + + HPA R+FQA+RI VN E+E++ GL A L GG L + Sbjct: 181 ALVDVIKSAIPIPAQFGGGHPAKRTFQAIRIAVNEELEQIDDGLPFAWDVLAPGGRLAAI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR VK+F R+ + I + + +T++ + PT +VA N R++ Sbjct: 241 SFHSLEDRRVKRFLVDRARGCICPPDLPICACGRTPEGELLTRRAIAPTAGEVAHNPRAK 300 Query: 308 SAKLRAGMRTVE 319 SA LR ++ E Sbjct: 301 SAHLRGALKLKE 312 >gi|109914373|sp|Q5XAL3|RSMH_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A +VVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + F+ +++K ++P+ ++A N+R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHSELAANKRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|312959049|ref|ZP_07773568.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas fluorescens WH6] gi|311286819|gb|EFQ65381.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas fluorescens WH6] Length = 315 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPGGKLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L + V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA+ + A V+++ R+ GEE+ A R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRELQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F R++ I K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|89095267|ref|ZP_01168188.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92] gi|89080474|gb|EAR59725.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92] Length = 312 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 111/315 (35%), Positives = 167/315 (53%), Gaps = 12/315 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 + H+ VLL++ + L +D TFG GG+S + ++ +D+DP Sbjct: 1 MSQE-FKHITVLLDEAVDALVQDKSGFYVDGTFGRGGHSSLVLQGLDENGRLMGIDKDPT 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGF 125 A++ E +D +E+FS+ +F+QLQ +V D VDGV+ DLGVSS Q+D RGF Sbjct: 60 AIAHAHERFKD-EERFSIAHGSFAQLQQFVTERGMDGKVDGVLLDLGVSSPQLDDASRGF 118 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF GPLDMRM SG SA++ + +A ++ ++ GEEK + R+A AIV R P Sbjct: 119 SFLNDGPLDMRMDTSSGESAAEWIARAEESEIADVIYTYGEEKFSRRMAKAIVNYRAETP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +I + + + +PATR+FQ +RI +N E+E+L + L A LK GG Sbjct: 179 ITTTAQLAKIIAEANPAWEKGK-NPATRAFQGIRIHINKELEDLEKCLDQALDMLKVGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFN 303 L+V+SFHSLEDR+VK+F + IP + K + + N Sbjct: 238 LVVISFHSLEDRIVKRFIRQHVKGDEHLPPGIPFTNDMLKIRMKNVGKAKKASAGETKDN 297 Query: 304 RRSRSAKLRAGMRTV 318 R+RSA +R + Sbjct: 298 VRARSAVMRVAEKVA 312 >gi|263506479|sp|B0U504|RSMH_XYLFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 313 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HVPVL + + L LD TFG GG++R + G ++ +D+DP A++ Sbjct: 2 THVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA- 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDM Sbjct: 61 ERVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ L Sbjct: 121 RMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAEL 180 Query: 195 IQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SF Sbjct: 181 IASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F + + R + + + I + + ++++ N R+RSA Sbjct: 241 HSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAV 299 Query: 311 LRAGMR 316 LR + Sbjct: 300 LRVAEK 305 >gi|226355756|ref|YP_002785496.1| S-adenosyl-methyltransferase MraW [Deinococcus deserti VCD115] gi|263447379|sp|C1D1L8|RSMH_DEIDV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226317746|gb|ACO45742.1| putative Methyltransferase [Deinococcus deserti VCD115] Length = 300 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 124/308 (40%), Positives = 169/308 (54%), Gaps = 18/308 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 H VL +V+ L P PGK I+D T G G++R + G++V +D+DPF Sbjct: 5 EDTTTAESLIHTSVLSAEVLEALAPTPGKTIVDGTLGGAGHTRLLLEAGAHVYGIDQDPF 64 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ +E L + VDG++ D+GVSS Q+D RGFS+ Sbjct: 65 ALDRAREAGLPNLTVLQGNYRDMVSLLEQAGVSQVDGILLDIGVSSFQLDDAGRGFSYHT 124 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRMS SG SA+DVVN +DL I+ GE++ + RIA AI + RQ AP +TT Sbjct: 125 EAPLDMRMSQSGESAADVVNTYEEEDLAAIIYEYGEDRLSRRIARAIGQARQKAPIETTV 184 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++++ + IHPA R+FQALRI VN+E+ L GL++AE L+ GG L V+S Sbjct: 185 QLAEIVKRAYPGF-SKGIHPARRTFQALRIHVNDELGALRDGLQAAETLLRPGGRLAVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+F V Q +TK+ VV + E+ A N RSRSA Sbjct: 244 FHSLEDRIVKRFLLGSE-----------------VLQPLTKRPVVASDEEQAINPRSRSA 286 Query: 310 KLRAGMRT 317 KLRA R Sbjct: 287 KLRAAERV 294 >gi|320540413|ref|ZP_08040063.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Serratia symbiotica str. Tucson] gi|320029344|gb|EFW11373.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Serratia symbiotica str. Tucson] Length = 313 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 171/312 (54%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN +D TFG GG+S ++A+DRDP A++ + Sbjct: 6 KHATVLLDEAVNGLNIRSNGTYIDGTFGRGGHSCLILSQLGPEGRLLAIDRDPQAIAAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F++ FS L DYV ++ +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---DDPRFTIVHGPFSALSDYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T+ Sbjct: 123 PLDMRMDPSTGLSAAEWLMKAEADDIAWVLKTFGEERFAKRIACAIVERNRVEPMTRTKQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + HPATRSFQA+RI++N+E+EE+ L + L G L ++SF Sbjct: 183 LADLIAGA-SPIREKHKHPATRSFQAIRIYINSELEEIECALNGTLEVLAPQGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S A + + + + K ++P++ +VA N R Sbjct: 242 HSLEDRIVKRFIRHHSRGAQAPAGIPLTEEQLRSMGGRTLKVLGK--MMPSEAEVAGNPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR R Sbjct: 300 ARSSVLRIAQRV 311 >gi|300788105|ref|YP_003768396.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32] gi|299797619|gb|ADJ47994.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32] Length = 317 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 171/315 (54%), Gaps = 10/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 T +HVPVLL +++ L P V++DAT G GG+S + + + +ALDRDP A Sbjct: 2 TAPEHVPVLLSRIVELFTPVFTDRDGVLVDATVGLGGHSDALLEAFPRLRLVALDRDPAA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ + L + + + DG++FDLGVSSMQ+D +RGF++ Sbjct: 62 LEKSAERLARHGDRVDFVHTVYDGLPEALESVGLEKADGILFDLGVSSMQLDRAERGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K PLDMRM + G +A+DV+N +L RIL GEE+ A RI A+V R+ PF Sbjct: 122 SKDSPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVKAVVAAREKEPFT 181 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L L+ V ++ HPA R+FQALRI VN E+E L + + +A AL GG + Sbjct: 182 TSGRLVELLYDAVPAATRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGALPVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V S+ SLEDRLVK+ A + + H + +T+ +E++ N R Sbjct: 242 VVESYQSLEDRLVKQALAELAKSRTPEGLPVELPGHGPELKLLTRGAEKAGEEEIERNPR 301 Query: 306 SRSAKLRAGMRTVER 320 + S +LRA R E Sbjct: 302 AASVRLRAAERIGEP 316 >gi|304310311|ref|YP_003809909.1| Methyltransferase involved in cell envelope biogenesis [gamma proteobacterium HdN1] gi|301796044|emb|CBL44248.1| Methyltransferase involved in cell envelope biogenesis [gamma proteobacterium HdN1] Length = 310 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 122/307 (39%), Positives = 179/307 (58%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++VI L + +D TFG GG++R+ S ++ D+DP A++ G + Sbjct: 6 HRPVLLQEVIENLLTDTAGIYVDGTFGRGGHARALLARLSADARLVGFDKDPEAIAVGLQ 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ +F+++ V GV+ DLGVSS Q+D RGFSF GP Sbjct: 66 -LAAEDARFSIVHGSFAEIGTRPELAGLQGTVSGVLLDLGVSSPQLDDASRGFSFMNDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G SA+D +N + K + +L LGEE+ A RIA AIV +R+ +P TT+ L Sbjct: 125 LDMRMNNDAGESAADWLNHEDAKQIEWVLRELGEERFAGRIARAIVAQREMSPLCTTKQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI K V + ++ HPATRSFQA+RI+VN E+++L GL ++ + +K GG + V+SFH Sbjct: 185 ADLIYKAVPVREKHK-HPATRSFQAVRIWVNRELQDLEVGLAASLELVKVGGRIAVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+FF R + + A + K V P+ ++VA N RSRSA L Sbjct: 244 SLEDRIVKQFFEKHVKGEQLPRGLPVTGAALGIRLRHVAKKVRPSDDEVAVNVRSRSATL 303 Query: 312 RAGMRTV 318 R + Sbjct: 304 RVVEKIA 310 >gi|195978690|ref|YP_002123934.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|262826706|sp|B4U4K4|RSMH_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|195975395|gb|ACG62921.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 316 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S + ++ D+D A+ QE Sbjct: 7 HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A +VVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++LI+ + + HPA + FQA+RI VN+E+ ++ A + L G + V++ Sbjct: 187 LAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + +++K ++P+Q+++ N R+ SA Sbjct: 247 FHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQKELMANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKV 314 >gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Ikeda] gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 180/312 (57%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74 H PVL ++++ L P + LD TFGAGGYS+ VIA DRDP +S Sbjct: 1 MNNIHTPVLATEMLSYLAPVDNETYLDCTFGAGGYSKLILSNCNCKVIAFDRDPAVISIA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + Y +F+ F F + Y+ ++G+V DLGVSSMQ+D +RGFSF+ L Sbjct: 61 SQFYQQYPNRFTFFNENFVEANKYLSKLDKLNGIVMDLGVSSMQLDEANRGFSFRYDAEL 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G AS+ VN+A+ L I+ GEE +A++IA IV R+ P TT L++ Sbjct: 121 DMRMSQKGYKASEFVNEASEHQLADIIYKFGEENKANKIAKHIVLARKKKPITTTLQLAN 180 Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ V + K N+I AT++FQA+RIF+N+E+ + L + + L G LIVVSF Sbjct: 181 IIREAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSR 307 H+LED ++KKF + K +A + P V +TKK+ VPT+ ++ N RSR Sbjct: 241 HALEDAIIKKFMHQNAVKKVAQSKYSTNRQSPLQNGVLYLLTKKIAVPTRTEIINNPRSR 300 Query: 308 SAKLRAGMRTVE 319 SA+LRA ++ E Sbjct: 301 SARLRAALKINE 312 >gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] gi|306532305|gb|ADN01839.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] Length = 324 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 176/325 (54%), Gaps = 7/325 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + HVPVL E+V A L+ +++DAT G GG+S + + G ++ +D DP Sbjct: 1 MVSMEIVHVPVLREEVGAFLSVRE-GLVVDATLGEGGHSEALLESRPGIRILGVDADPIM 59 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +S E + + ++ L Q F + L+ + + G++ DLG+SS ++ RGFSF + Sbjct: 60 LSRAGERLSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLR 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR+S + ASDVVN + +L I GEE + RIA AIV R+ P T+ Sbjct: 120 REPLDMRLSPYLPMKASDVVNTYSETELVDIFSRFGEEPFSKRIARAIVSERRKMPITTS 179 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ K V + RIHPATR FQALRI VN E+E + + +R+ + L GG + V Sbjct: 180 DHLAEVVMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+ F +G I + + +TKK V P +E+V N S Sbjct: 240 ISFHSLEDRIVKRLFRFYAGACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRANPAS 299 Query: 307 RSAKLRAGMRTVERSIEDDSFVHLP 331 RSA+LR + + + + LP Sbjct: 300 RSARLRVLEKVRDAAHLREEGHALP 324 >gi|329118760|ref|ZP_08247458.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria bacilliformis ATCC BAA-1200] gi|327465107|gb|EGF11394.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria bacilliformis ATCC BAA-1200] Length = 316 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 166/314 (52%), Gaps = 10/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 + HV VLL + + L V +D TFG GG+SR ++ D+DP Sbjct: 1 MSSEAFSHVSVLLHEAVDALAVVSDGVYVDGTFGRGGHSRLILSHLGANGRLVVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + S+ FS Q D + +DG +FDLG+SS QID G RGFS Sbjct: 61 -AVAAARELAAQDGRVSVVHDGFSCFQTALDALNVGQIDGALFDLGISSPQIDDGSRGFS 119 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G+SA++ + A+ ++ ++ GEE+ A +IA AIV +R + P Sbjct: 120 FRFDAPLDMRMDTTRGMSAAEWLAAADEDEICEVIRNYGEERFARQIARAIVAQRGTNPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ + + V ++ PATR+FQA+RIF+N E+EE+A L A LK+GG L Sbjct: 180 DTTGKLAQVAAQNV-RTRERGQDPATRTFQAVRIFINRELEEIAAALPQAAGRLKSGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+FF S R + A P ++ K V + +VA N Sbjct: 239 AVISFHSLEDRIVKQFFRRHSEHEPLPRWAMVREADLPQPPLALVGKAVKASAAEVAANP 298 Query: 305 RSRSAKLRAGMRTV 318 R+RSA LR RT Sbjct: 299 RARSAVLRVARRTD 312 >gi|291571686|dbj|BAI93958.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis NIES-39] Length = 312 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 28/312 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PVL ++I L G LDAT G GG+++ + V A+DRD A++ + Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78 Query: 78 MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++ + FSQ DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA++++N + K L I GEE+ + RIA IV+ + T Q Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVE--KRPFQTTEQLAG 194 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + RIHPATR FQALRI VN E+ L L +A LK GG + ++SFHS Sbjct: 195 AIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F H + + +TKK + P ++++ N R+RSAKLR Sbjct: 255 LEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKLR 297 Query: 313 AGMRTVERSIED 324 R ++ Sbjct: 298 LAQRNTNETLNP 309 >gi|307132591|ref|YP_003884607.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937] gi|306530120|gb|ADN00051.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937] Length = 313 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 173/314 (55%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP AV+ Sbjct: 3 ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQAVA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS+L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDARFSIIHGPFSELAEYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + +A +D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + HPATRSFQA+RI++N+E+EE+ + L A + L G L V Sbjct: 180 TKALAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALDGALQVLAPEGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + +++ K ++P E+VA Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSRGGQTLKAVGK--MMPPDEEVAD 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRFAER 310 >gi|313891489|ref|ZP_07825102.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII 345-E] gi|313120066|gb|EFR43245.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII 345-E] Length = 310 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 HV VL ++I+ + V D T G G+ + G+ +I +D+D A+ Sbjct: 1 MEFKHVTVLRREMISAVLTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + M+D + + FS +++ + + ++G +FDLGVSS Q+D +RGFS+ Sbjct: 61 AAELRMKDCTCNLNFVHSNFSNIKNILSEKNLNKINGFIFDLGVSSYQLDEANRGFSYMH 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ + +A DVVN+ + + + I+ GEE+ A RIA IV R++ +TT Sbjct: 121 EGRLDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L S+I+ + ++ N HPA R+FQA+RI VNNE+ + + L +GG + + Sbjct: 181 GELVSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK+ F + + + + H + + + PT E++A N R+ Sbjct: 241 ITFHSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRA 299 Query: 307 RSAKLRAGMRT 317 RSA LR + Sbjct: 300 RSAILRVAEKI 310 >gi|58698054|ref|ZP_00372978.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila ananassae] gi|225629940|ref|YP_002726731.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi] gi|254813210|sp|C0R598|RSMH_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58535411|gb|EAL59486.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila ananassae] gi|225591921|gb|ACN94940.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi] Length = 293 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 123/303 (40%), Positives = 181/303 (59%), Gaps = 18/303 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 2 THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y ++ LF FS +++ + +DG+VFD+GVSSMQ+D GDRGFSF GPLD Sbjct: 62 SVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQLDNGDRGFSFLHDGPLD 121 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 M M S +AS VN +++ + G E+ + +IA AIV R+ +TT +L+ Sbjct: 122 MSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAIVNARKKKTIKTTFELAD 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L G LIVV+FHSL Sbjct: 182 IVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK FF F + KKV+ + E+V+ N RSRSAKLRA Sbjct: 241 EDRIVKTFFKDLCATDC------------KTFSLLNKKVIEASIEEVSANPRSRSAKLRA 288 Query: 314 GMR 316 R Sbjct: 289 IQR 291 >gi|66047337|ref|YP_237178.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae B728a] gi|75500766|sp|Q4ZNY2|RSMH_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|63258044|gb|AAY39140.1| methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 313 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM GISA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|330973397|gb|EGH73463.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 313 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|284053843|ref|ZP_06384053.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis str. Paraca] Length = 312 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 28/312 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PVL ++I L G LDAT G GG+++ + V A+DRD A++ + Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78 Query: 78 MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++ + FSQ DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA++++N + K L I GEE+ + RIA IV+ + T Q Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVQ--KRPFQTTEQLAG 194 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + RIHPATR FQALRI VN E+ L L +A LK GG + ++SFHS Sbjct: 195 AIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F H + + +TKK + P ++++ N R+RSAKLR Sbjct: 255 LEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKLR 297 Query: 313 AGMRTVERSIED 324 R ++ Sbjct: 298 LAQRNTNETLNP 309 >gi|260576880|ref|ZP_05844863.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2] gi|259020917|gb|EEW24230.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2] Length = 334 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 145/319 (45%), Positives = 187/319 (58%), Gaps = 5/319 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M + I HVPVLL ++A + P V LD TFGAGGY+R G+ VI +DRD Sbjct: 1 MMAGIAPA-APHVPVLLRPLLAAVAPVQ-GVWLDGTFGAGGYARGLLAAGAAKVIGIDRD 58 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ +Y ++ L FS+L + +DG+V DLGVSSMQ+D +RGFSF Sbjct: 59 PLALQMAAAWAGEYGDRLRLVAGNFSELDVLAGE-PLDGIVLDLGVSSMQLDLPERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN L IL GEE+ + RIA AIV R AP T Sbjct: 118 LRDGPLDMRMSQQGDSAADIVNATEEGALADILYTYGEERASRRIAKAIVAARAIAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ + K + H ATRSFQA+RI VN E EL +GL +AE+ALK GGLL V Sbjct: 178 TLRLAEIVAGCLPRPKPGQSHAATRSFQAIRIAVNTEFSELVEGLAAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRS 306 V+FHSLEDR+VK+FF RSG P+ A F +T++ V P ++A N R+ Sbjct: 238 VTFHSLEDRIVKRFFQLRSGNEANANRYAPAKAEDAPRFDLVTRRAVAPDDAELAENPRA 297 Query: 307 RSAKLRAGMRTVERSIEDD 325 RSAKLR G RT + D Sbjct: 298 RSAKLRVGRRTEAPAGTSD 316 >gi|229588482|ref|YP_002870601.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens SBW25] gi|262825100|sp|C3KCS2|RSMH_PSEFS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229360348|emb|CAY47205.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens SBW25] Length = 315 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGSDGKLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L + V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA+ + A V+++ R+ GEE+ A R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERREIQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F R++ I K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|330964049|gb|EGH64309.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 313 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L P LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRPDGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F SQ Q+ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|120437110|ref|YP_862796.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803] gi|171460858|sp|A0M534|RSMH_GRAFK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117579260|emb|CAL67729.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803] Length = 302 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL++ + L+ P + +D TFG GG+S+ K + A D+D A+ Sbjct: 5 MEYHNPVLLKESVDGLDVKPDGIYVDVTFGGGGHSKEILKRLGPDGKLYAFDQDKDALEN 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F+L F L+ + K VDGV+ D GVSS Q + +RGFS + Sbjct: 65 -----KIEDGRFTLINENFRYLKRFLRFYGIKKVDGVLGDFGVSSHQFNEAERGFSTRFD 119 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ SA +V+N+ + L ++ + K A ++A IV R++ P +T++ Sbjct: 120 AKLDMRMNQGDKLSAYEVINEYEEEQLKKLFWAYADLKNAPKLARTIVSERKNNPIETSE 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ ++ K N+I + +QA+RI VN EIE L + L E+ LK GG L ++S Sbjct: 180 QLNDLLKPLLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEEILKPGGRLSLIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK++ S + + M + + P F+ + +++P++E++ N R+RSA Sbjct: 238 YHSLEDRLVKRYIRSGLFEGEPEKDMYGNISVP--FKKVNG-LIIPSKEEIQQNNRARSA 294 Query: 310 KLRAGMR 316 KLR + Sbjct: 295 KLRVARK 301 >gi|294056587|ref|YP_003550245.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM 45221] gi|293615920|gb|ADE56075.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM 45221] Length = 318 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 187/318 (58%), Gaps = 11/318 (3%) Query: 9 MSSAIHHTIGD-----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNV 61 M S+I + HVPVLL + + LL+P G +LD TFG GG++R+ G V Sbjct: 1 MLSSIDDVLNPANYGGHVPVLLRETLELLSPRAGAKLLDGTFGGGGHTRALLGAAEGVTV 60 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 +ALDRDP AV E ++ ++F L F L D + G DG++FD G+SS Q+D Sbjct: 61 VALDRDPEAVERAAEVEAEFGQRFRLVSMNFGDLCDLE-ESGFDGILFDFGLSSFQLDTA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF++ P+DMRM+ + GISA++ + A+ + L R + GEEK+ ++ +I+ R Sbjct: 120 ERGFSFREDAPVDMRMNPNAGISAAEFLETADEEALVRAVRNYGEEKRWRKVVQSILSAR 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + Q T LS LI V R IHPATRSFQ +R+ VN+E+ + +GL +A + Sbjct: 180 GTGRLQRTSSLSELIADAVGPGPRGRKTIHPATRSFQGIRVEVNDELNAIERGLPAAFER 239 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L++GG L +SFHSLEDR+VK+F +G+ + + + I+ + +VP ++ Sbjct: 240 LQSGGTLAAISFHSLEDRIVKRFCRRMAGRPEHAGDSRTQDERQVLGKMISTRPIVPAED 299 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N RSRSA++RA + Sbjct: 300 EIAINPRSRSARMRAIRK 317 >gi|281424950|ref|ZP_06255863.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302] gi|281400794|gb|EFB31625.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302] Length = 315 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 17/317 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HVPVLL+ + LN G + +D TFG GG+SR +++ + D+D Sbjct: 2 VKTAETYHVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDAD 61 Query: 70 AVSC------GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120 A E +F+ ++ F L++++ +DG++ DLGVSS D Sbjct: 62 AEQNVMHREGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDD 121 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSF+ PLDMRM+ G++A+DVVN + + L + + GE KQ+ RIA A+VK Sbjct: 122 ESRGFSFRFDAPLDMRMNKRAGLTAADVVNDYDEEALANLFYLYGELKQSRRIAAALVKA 181 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R TTQD + F + + FQALRI VN+E++ L + L+SA + L Sbjct: 182 RAQQRIATTQDFLKATEP--LFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 ++GG L V+++HSLEDR+VK + + + V+ P F + KV+VP+ ++ Sbjct: 240 RSGGRLSVITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADE 297 Query: 300 VAFNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 298 QQENPRSRSAKLRIAEK 314 >gi|198274315|ref|ZP_03206847.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135] gi|198272805|gb|EDY97074.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135] Length = 304 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 H+PVLL + I ++ G +D TFG GG+SR + S + + D+D A Sbjct: 3 KTEPTYHIPVLLHESIEGMHLQSGGTYVDVTFGGGGHSREILRNMDDKSRLFSFDQDADA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 E ++F+ ++ F L +++ VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIINDKRFTFVRSNFRYLHNFLRYYGVEEVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ GI+A+D++N + L + + GE K + ++A +VK R P + Sbjct: 118 RFDGKLDMRMNKRAGITAADIINTYEEEKLADLFYLYGELKNSRKLAATLVKARAQKPVE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +++ + + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFIEIVKP--LYGREREKKEMAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + + P F+ I KV++P+++++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNIEGKAKQDFFGNVETP--FKLINNKVIIPSEDEIQRNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|325473769|gb|EGC76957.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Treponema denticola F0402] Length = 315 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 8/307 (2%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLLE+ + L P + +D T G GG++ +F K + I +D D +E Sbjct: 5 HTSVLLEECLEFLKPDVSDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + E+ + P + ++ DLG+S RGFSF PLD Sbjct: 65 RLKPFGERIRFHLGWSDEFFKNYPKDSAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ +SA+D+VN N KDL ++ GEE+ + +IA IV++R +A F T ++L+ Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSTAKELAD 184 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I K V ++ +IHPAT++FQALRI VN E++ L + L +A L G L +++FHS Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK +F +M + +TKK V + E++ N SRSA+L Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304 Query: 312 RAGMRTV 318 R + Sbjct: 305 RVVRKID 311 >gi|258645236|ref|ZP_05732705.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470] gi|260402586|gb|EEW96133.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470] Length = 310 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VL ++++ + +D T G GG+S + +I +D+D A+ +E Sbjct: 5 HTTVLQNEMVSHVLTNTNGTYVDCTLGGGGHSLALAEGLSNLGCIIGVDQDGEAIEAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +R + +F + FS + + + VDG +FDLGVSS Q+D G RGFS+ +G L Sbjct: 65 RLRGAQCKFISVRDNFSNINGILKENGIEKVDGFIFDLGVSSHQLDDGARGFSYMNNGKL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A DV+N + L I+ GEE+ ASRI I + R P TT++L Sbjct: 125 DMRMDQRNSLTAYDVINTYTKEHLRNIIRDYGEERWASRIVDFIDRARMRRPISTTEELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + + + HPA R+FQA+RI VNNE+ L + + L GG L V++FH Sbjct: 185 HVIKAAIPSAARRDGPHPAKRTFQAIRIEVNNELGILRKAMEDCINHLNKGGRLGVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F S + I H +S+ K + P+ ++V N R+RSA Sbjct: 245 SLEDRIIKNTFRDMSKDCICPSEIPICICNHRRQVRSV-GKAIRPSPQEVKENPRARSAV 303 Query: 311 LRAGMRT 317 LR + Sbjct: 304 LRVVEKV 310 >gi|269137987|ref|YP_003294687.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202] gi|267983647|gb|ACY83476.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202] gi|304558034|gb|ADM40698.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda FL6-60] Length = 313 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 121/317 (38%), Positives = 176/317 (55%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL++ +A LN + +D TFG GG+SR +IA+DRDP Sbjct: 2 SENFQHKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDP--- 58 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + +FS+ FS L DYV + +DG++ DLGVSS Q+D +RGFSF Sbjct: 59 QAIAAAAQIDDPRFSIVHGPFSALADYVQEMGLSGRIDGILLDLGVSSPQLDDPERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA+ + QA +D+ +L GEE+ A RIA AIV+R ++ P Sbjct: 119 MRDGPLDMRMDPSRGLSAAQWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEPLT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L++LI + K HPATRSFQA+RI++N+E++E+ + L A AL G L Sbjct: 179 RTRELAALISEA-SPFKEKHKHPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F S + + + A +++ K+ +P + +VA Sbjct: 238 VISFHSLEDRLVKRFMRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR R Sbjct: 296 DNPRARSSVLRVAERIS 312 >gi|294677904|ref|YP_003578519.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003] gi|294476724|gb|ADE86112.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003] Length = 338 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 149/336 (44%), Positives = 201/336 (59%), Gaps = 8/336 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71 + H+PVLL ++ + P LD TFGAGGY+R G VI +DRDP A Sbjct: 1 MDRPDTPHIPVLLRPLLQAVAPV-LGTWLDGTFGAGGYARGLLAAGAGRVIGIDRDPLAF 59 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ E+ L + TFS L + +GVV DLGVSSMQ+D +RGFSF Sbjct: 60 EMAAPWRGEFGERLVLVENTFSNLDAVAAEIAPEGLNGVVLDLGVSSMQLDQAERGFSFL 119 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRMS SG SA+D+VN A L IL GEE+ + RIA AIV+ R+SAP+++T Sbjct: 120 RDGPLDMRMSQSGPSAADLVNTAEEGALADILYHYGEERASRRIARAIVEARKSAPYEST 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L + I++ + K + HPATRSFQALRI VN+E +L GL +AE+ALK GG L VV Sbjct: 180 KQLVATIERCLPRPKPGQSHPATRSFQALRIAVNDEFGQLIAGLEAAERALKPGGKLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+FF +R+G+ R+ + A F +T+K V P + ++A N R+R Sbjct: 240 TFHSLEDRVVKRFFQARAGRAPGGSRYAPEAAPEAAAFDLVTRKGVGPDEIELAQNPRAR 299 Query: 308 SAKLRAGMRTVERS-IEDDSFVHLP-RLPTLSQFRG 341 SA LR G RT + D S + LP L + RG Sbjct: 300 SAILRIGARTDSPAGRADRSSLGLPAPLFETDRSRG 335 >gi|225871093|ref|YP_002747040.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi 4047] gi|262826692|sp|C0M7A8|RSMH_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225700497|emb|CAW94939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi 4047] Length = 316 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S + ++ D+D A+ QE Sbjct: 7 HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A +VVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++LI+ + + HPA + FQA+RI VN+E+ ++ A + L G + V++ Sbjct: 187 LAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQRAIELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + +++K ++P+Q+++ N R+ SA Sbjct: 247 FHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQKELMANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKV 314 >gi|116670123|ref|YP_831056.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24] gi|263447796|sp|A0JV86|RSMH_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116610232|gb|ABK02956.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24] Length = 332 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 124/322 (38%), Positives = 185/322 (57%), Gaps = 15/322 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--NVIA 63 T HVPVL ++ I LL P G+ V++DAT G GG+S + + ++I Sbjct: 8 KPTSERHVPVLKDRCINLLAPGIEAARQRGETPVVIDATLGMGGHSEALLQRFPDLHLIG 67 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +DRD A++ E ++ + ++ L A + ++ D + D V GV+ DLGVSS+Q+D Sbjct: 68 IDRDEEALALAGERLKPFADRTDLVHAVYDEIPDVLRDLGVSEVHGVLMDLGVSSLQLDE 127 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGF++ PLDMRM G +A+DVVN + +DL RI+ GEEK A RIA+ IV Sbjct: 128 RERGFAYSFDAPLDMRMDTSRGQTAADVVNNYSEEDLVRIIRKWGEEKFAGRIANRIVAA 187 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R++ PF TT +L I+ V HPA R+FQALRI VN E++ L + + +A A Sbjct: 188 REAKPFATTGELVDTIRAVVPAGAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDA 247 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V+S+HSLED++VKK F + S + + H +++TK VPT + Sbjct: 248 LAMGGRVVVMSYHSLEDKIVKKVFQTGSKSSAPLGFPVELEEHKPELKTLTKGTEVPTAD 307 Query: 299 DVAFNRRSRSAKLRAGMRTVER 320 ++A N R+ SA+LRA R R Sbjct: 308 EIAENPRAASARLRAVERIRAR 329 >gi|299143950|ref|ZP_07037030.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518435|gb|EFI42174.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 312 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 161/311 (51%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VL E I LLN + +D T G G+S K+ +I +D+D A+ Sbjct: 1 MKFNHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALE 60 Query: 73 CGQETMRDYKEQ----FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +E + + F+ F+ + D + VDG + DLGVSS Q D GDRGFS+ Sbjct: 61 KSKEVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYN 120 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM + SA D+VN + +++ +IL EEK A RIA IVK R P T Sbjct: 121 YDAKLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDT 180 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + + + + HPA ++FQALRI NNE++ L L L GG + Sbjct: 181 TFELVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK+ F + + + + + IT+K +V +++++ N R Sbjct: 241 VISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIVASEKELIENNR 300 Query: 306 SRSAKLRAGMR 316 + SAKLR + Sbjct: 301 AHSAKLRVAEK 311 >gi|299142294|ref|ZP_07035427.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735] gi|298576383|gb|EFI48256.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735] Length = 315 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 17/317 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HVPVLL+ + LN G + +D TFG GG+SR +++ + D+D Sbjct: 2 VKTAETYHVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDAD 61 Query: 70 AVSC------GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120 A E +F+ ++ F L++++ +DG++ DLGVSS D Sbjct: 62 AEQNVMHREGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDD 121 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSF+ PLDMRM+ G++A+DVVN N + L + + GE KQ+ RIA A++K Sbjct: 122 ESRGFSFRFDAPLDMRMNKRAGLTAADVVNDYNEEALANLFYLYGELKQSRRIAAALIKA 181 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R TTQD + F + + FQALRI VN+E++ L + L+SA + L Sbjct: 182 RAQQRIATTQDFLKATEP--LFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 ++GG L V+++HSLEDR+VK + + + V+ P F + KV+VP+ ++ Sbjct: 240 RSGGRLSVITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADE 297 Query: 300 VAFNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 298 QQENPRSRSAKLRIAEK 314 >gi|225867991|ref|YP_002743939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus] gi|262827289|sp|C0MGV8|RSMH_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225701267|emb|CAW98245.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus] Length = 316 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S + ++ D+D A+ QE Sbjct: 7 HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + + F L+ + + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 QLKPYIDKGQVTFIKDNFRHLKVRLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A +VVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++LI+ + + HPA + FQA+RI VN+E+ ++ A + L G + V++ Sbjct: 187 LAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + +++K ++P+Q+++ N R+ SA Sbjct: 247 FHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQKELMANNRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVARKV 314 >gi|83648530|ref|YP_436965.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396] gi|123530830|sp|Q2S9Y4|RSMH_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83636573|gb|ABC32540.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396] Length = 309 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 10/311 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HV VLL + + L + +D TFG GG+S K ++ +D+DP Sbjct: 1 MESNQYGHVTVLLAEAVEALGVKADGLYIDGTFGRGGHSAEILKALGPQGRLLGIDKDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A E ++F Q +F+ + +V + GVDGV+ DLGVSS Q+D +RGFS Sbjct: 61 ARRTAMERFS-GDDRFLFRQGSFADMASFVSELQWPGVDGVLLDLGVSSPQLDEAERGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM G+SAS+ VN A ++++++L LGEE+ A R+A AIV RQ+ P Sbjct: 120 FMQDGPLDMRMDPDSGLSASEWVNTAKEEEISKVLWDLGEERFARRMAKAIVAARQTQPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ ++ + + +PATR+FQA+RIF+N E+++LAQGL A LK GG L Sbjct: 180 TRTLQLAEIVAAANPRWEKGK-NPATRAFQAIRIFINRELDDLAQGLEQAFGVLKPGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK++ + + + P + + KK + + +V N R Sbjct: 239 TVISFHSLEDRMVKQYMRDIVRGPKTPKWLPVVDDAPPKAKLVGKK-IRAGETEVVANVR 297 Query: 306 SRSAKLRAGMR 316 +RSA +R + Sbjct: 298 ARSAVMRVLEK 308 >gi|323343877|ref|ZP_08084104.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella oralis ATCC 33269] gi|323095696|gb|EFZ38270.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella oralis ATCC 33269] Length = 304 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 12/304 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 H+PVLL++ I LN P V +D TFG GG+SR + + + D+D A Sbjct: 7 TYHIPVLLKESIDGLNIQPEGVYVDVTFGGGGHSREILRRLGKNGRLYSFDQDADAE--- 63 Query: 75 QETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q + D + F + Y +DG++ DLGVSS D RGFSF+ + PL Sbjct: 64 QNIVADSRFTFVRSNFRYLKNWMRYYKIDHIDGLLADLGVSSHHFDDESRGFSFRFNAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G +A+D+VN+ + + L + + GE K + RIA AIVK R + TT+ Sbjct: 124 DMRMNKRAGTTAADIVNKYDEETLANVFYLYGELKNSRRIAAAIVKARATYEIGTTRAFI 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I+ F + + FQALRI VN+E+ L + L A K L GG L ++++HS Sbjct: 184 DAIEP--LFKREREKKDMAKLFQALRIEVNHEMRALKEMLEGASKCLGTGGRLSIITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + P F I KV+ P+ E+ N RSRSAKLR Sbjct: 242 LEDRMVKNMMRTGNVEGKLHQDFYGHIETP--FVLINSKVITPSHEEQEQNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|294792047|ref|ZP_06757195.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27] gi|294457277|gb|EFG25639.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27] Length = 311 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 159/309 (51%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72 +H VLL + + + P + +D T G G++ + +I LD+D A+S Sbjct: 2 MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEILDPEGMIIGLDQDEDALS 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D K Q FS L+D + + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 62 VARQRLSDLKCQVLTIPTNFSNLKDALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT Sbjct: 122 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 182 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + + K + P+ ++ N R+R Sbjct: 242 ITFHSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 301 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 302 SAKLRVAVK 310 >gi|256379773|ref|YP_003103433.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827] gi|255924076|gb|ACU39587.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827] Length = 316 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 171/312 (54%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL++V+ LL P V +D T G GG+S + K +I LDRDP Sbjct: 3 EAARHVPVLLDRVLGLLAPALAGRDDAVFVDCTLGLGGHSEAVLKAHPGVRLIGLDRDPQ 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ + + + ++ Q T+ + + V + VDG++ DLGVSS+Q+D +RGF++ + Sbjct: 63 AIALAKARLAPFADRVEFVQTTYDGIAEAVDGRRVDGILMDLGVSSLQLDARERGFAYSQ 122 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRMS SG +A+DV+N +L R+L GEE+ A +IA A+V+ R PF T+ Sbjct: 123 DAPLDMRMSAGSGETAADVLNTYPAAELARVLRDYGEERFARKIAAAVVRERAKEPFTTS 182 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L L+ +V ++ HPA R+FQALRI VN E+E L L +A L GG ++V Sbjct: 183 GRLVELLYASVPAATRRTGGHPAKRTFQALRIEVNRELESLRAALPAALSVLAVGGRIVV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+ SLEDR+VK+ A + V + H +T+ V + ++ N R+ Sbjct: 243 ESYQSLEDRMVKRALADLAASRTPVGLPVELPGHGPELTLLTRGAEVANESEIEDNPRAA 302 Query: 308 SAKLRAGMRTVE 319 +LRA R E Sbjct: 303 PVRLRAAERIRE 314 >gi|90416328|ref|ZP_01224260.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332053|gb|EAS47267.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 309 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 166/303 (54%), Gaps = 6/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I + P +D TFG GG++ V+A+D+DP A+ G++ Sbjct: 9 HTSVLLHEAIDAVVTDPDGFYIDGTFGRGGHTAELLSRLSEHGRVLAIDKDPQAIEAGRK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D + ++ +F+ + D+ + V GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 69 RFAD-DSRLTIVHGSFADMGDWREGREVTGVLLDLGVSSPQLDQAERGFSFMRDGPLDMR 127 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S G+SA++ ++ A D+ +++ GEE+ A R+A A+V+ R AP T L+ ++ Sbjct: 128 MDTSSGLSAAEWIDTAAEADIAQVIKEFGEERFAKRMAAAVVRERDLAPITRTVQLAKIL 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + HPAT++FQA+RIF+N E+++L L LK G L+V+SFHSLED Sbjct: 188 ADAHPAWERGK-HPATKAFQAIRIFINRELDDLVALLEQVIDLLKIDGRLVVISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK+F + + +++ + V K + P +V N RSRSA +R Sbjct: 247 RKVKRFIRDQERGIKLPKNLPVRDVERGVRLKKIGKAIKPEAVEVGGNVRSRSAVMRVAE 306 Query: 316 RTV 318 R Sbjct: 307 RVA 309 >gi|333029398|ref|ZP_08457459.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides coprosuis DSM 18011] gi|332739995|gb|EGJ70477.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides coprosuis DSM 18011] Length = 305 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 156/307 (50%), Gaps = 16/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 H+PVLL + I LN P + +D TFG GG+S+ ++ + D+D A Sbjct: 7 QPYHIPVLLNESINGLNIDPQGIYVDVTFGGGGHSKEILSHLAPTGHLFSFDQDKDAEKN 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130 +F+ ++ F +++++ V G++ DLGVSS D +RGFSF+ Sbjct: 67 S-----FQDSRFTFVRSNFRYIKNFLQYYHVTEVSGILADLGVSSHHFDESERGFSFRFD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ +A+D+VN + + L + + GE K + RIA IVK R P +T Sbjct: 122 ADLDMRMNTRASKTAADIVNNYSQEQLADVFYLYGELKNSRRIASKIVKYRAENPIKTIA 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I + + + FQALRI VN E+E L + L SA LK GG L V++ Sbjct: 182 QFIEVITPLFGPQRQKK--DFAKVFQALRIEVNEEMEALREMLISAIGLLKPGGRLAVIT 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK F + + + + P ++I KV++PT ++ N RSRSA Sbjct: 240 YHSLEDRMVKNLFKTGNIEGKLNKDFYGKIISPI--KAINNKVIIPTDQEQELNPRSRSA 297 Query: 310 KLRAGMR 316 KLR + Sbjct: 298 KLRIAEK 304 >gi|307294504|ref|ZP_07574346.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum L-1] gi|306878978|gb|EFN10196.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum L-1] Length = 321 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 134/318 (42%), Positives = 198/318 (62%), Gaps = 11/318 (3%) Query: 9 MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 MS+++ H+PVL+E+V+ L+ PG+ +D TFGAGGYS + G+ V A DR Sbjct: 1 MSASVDPAKDPDRHIPVLIEEVLHALSINPGEAHVDGTFGAGGYSSAMAAKGAKVFAFDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDR 123 DP A+ GQ + +L FS+++ + ++GV V D+GVSSMQ+D +R Sbjct: 61 DPDAIREGQALADEKG--ITLIAGEFSRMEALLAERGVTSVAGVTLDIGVSSMQLDRPER 118 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSFQ GPLDM MS SG++A+D +N A +++ IL GEE ++ R+A AIV+ R Sbjct: 119 GFSFQGDGPLDMTMSQSGMNAADFLNNAPEEEIANILYRYGEEPRSRRVAKAIVEAR--- 175 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P + T L+++++K + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG Sbjct: 176 PLERTGQLANIVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L +V+FHSLEDR+VK+F +RS G+ RHM A PA + K V P + ++A Sbjct: 236 RLAIVTFHSLEDRIVKQFLRNRSGGEAGGSRHMPQKQAGPAPTFAKPAKAVRPGEAELAR 295 Query: 303 NRRSRSAKLRAGMRTVER 320 N R+RSA LR+ +RT Sbjct: 296 NPRARSATLRSAIRTAAP 313 >gi|297620593|ref|YP_003708730.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375894|gb|ADI37724.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 306 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 11/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSC 73 + H+ VLLE+V + K +D T GAGG+S + + +D+DP A+ Sbjct: 1 MIPHLSVLLEEVAESFSDVDLKRFVDGTLGAGGHSAEILSAHPEIQRFLGIDQDPDALEI 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + E+ + FS L++++ VDG++ DLGVSSMQ D +RGFS Q+ Sbjct: 61 ARERLSKWSEKVMFQRGNFSDLKEHLAQNGLEKVDGILLDLGVSSMQFDRPERGFSLQQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ +A+++VN +L + GEEK+ A + P T Sbjct: 121 GPLDMRMNPEEPLTAAEIVNTWPEAELGDLFKKYGEEKRWRAAAR---AVAAARPISRTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L ++ + + +IHPAT FQALR+ VN EIE + + + A L GG L V+S Sbjct: 178 ELVEVLTSVLGRPRKGKIHPATLIFQALRLAVNREIERIEEVIPQAIGCLNPGGRLAVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + + R + + V IT+K +VP + +V N RSRS Sbjct: 238 FHSLEDRIVKRQFRYLADDKESTRGVGGVFISKEPVVNLITRKPIVPGKAEVERNPRSRS 297 Query: 309 AKLRAGMR 316 +KLR + Sbjct: 298 SKLRVVEK 305 >gi|271502050|ref|YP_003335076.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586] gi|270345605|gb|ACZ78370.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586] Length = 313 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 173/314 (55%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL++ + LN + +D TFG GG+SR ++A+DRDP AV+ Sbjct: 3 ETFNHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS+L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDARFSIIHGPFSELADYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + HPATRSFQA+RI++N+E+EE+ + L A K L G L V Sbjct: 180 TKALAELI-AAASPIREKHKHPATRSFQAIRIYINSELEEIERALDGALKVLAPEGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + +SI K ++P ++VA Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSQGGQTLKSIGK--MMPPDDEVAE 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRFAER 310 >gi|189461555|ref|ZP_03010340.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136] gi|189431761|gb|EDV00746.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136] Length = 306 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 166/315 (52%), Gaps = 19/315 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + H+PVLL + I +N P + D TFG GG+S+ + S++ + D Sbjct: 3 MNES---EQTYHIPVLLNESIDGMNLHPAGIYADMTFGGGGHSKEILRRMDKNSHLYSFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 +D A +F+ ++ F L +++ D ++ DLGVSS D + Sbjct: 60 QDEDAEKN-----IVDDSRFTFVRSNFRYLHNFLRYYGVEEADAILADLGVSSHHFDDSE 114 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ G LDMRM+ G++A+D+VN + L + + GE K + ++A +VK R Sbjct: 115 RGFSFRFDGKLDMRMNKRAGMTAADIVNNYEEERLANVFYLYGELKNSRKLASVLVKARA 174 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T D +I+ F K + FQALRI VN E+E L + L +A +ALK Sbjct: 175 QKQIVTIGDFLEIIKP--LFGKEREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKP 232 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+++++HSLEDR+VK + + + + + P F+++ KV+VP+ E++A Sbjct: 233 GGRLVIITYHSLEDRIVKNLIKTGNVEGKVEQDFFGNVQTP--FRAVNNKVIVPSDEEIA 290 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 291 RNPRSRSAKLRIAEK 305 >gi|332292526|ref|YP_004431135.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus 4H-3-7-5] gi|332170612|gb|AEE19867.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus 4H-3-7-5] Length = 301 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 17/309 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 + + H PVLL++ + LN P V +D TFG GG+SR + D+D A Sbjct: 2 YQMDYHNPVLLKETVDGLNIKPDGVYVDVTFGGGGHSREILSRLGPEGKLYGFDQDVDAQ 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E E+F+L F ++ ++ VDG++ D GVSS Q D +RGFS + Sbjct: 62 ENIIE-----DERFTLIPENFRYIKRFMRFHGVKKVDGILGDFGVSSHQFDVAERGFSTR 116 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM+ SA +V+N +DL ++ GE + A ++A IV+ R S +T Sbjct: 117 FESDLDMRMNQKDTLSAYNVINDYEEEDLRQVFWQYGELRNAPKLASTIVQERNSQFIKT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 ++ L ++ + + ++I + +QA+RI VN EIE L + L E+ L GG + + Sbjct: 177 SEHLKKVLAPFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLMQTEQLLDTGGRISL 234 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDRLVK++ S + + M + P F+ + K+++P +++ N R+R Sbjct: 235 ISYHSLEDRLVKRYIRSGMFEGEPEKDMYGNFEVP--FKKV-GKLIIPDSKEIKLNNRAR 291 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 292 SAKLRIAEK 300 >gi|83595986|gb|ABC25345.1| S-adenosyl-methyltransferase [uncultured marine bacterium Ant29B7] Length = 304 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 148/309 (47%), Gaps = 16/309 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL+ I L+ P + +DATFG GG+SR+ + D+DP Sbjct: 1 MTYHDPVLLDACIQHLHIQPHGIYVDATFGGGGHSRAILDQLGPEGKLFGFDQDPDTSKN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++F L F + VDG++ DLGVSS Q+D G RGFSF++ Sbjct: 61 A-----PNDDRFQLLPFNFEHITRILRLHKVTAVDGILADLGVSSHQLDEGSRGFSFRQH 115 Query: 131 GPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ + + + L + L G+ QA R+A AI++ R + T+ Sbjct: 116 AELDMRMNPQSGPGAREWLETVTWEQLAQTLREFGDVHQAGRVATAIIQARDAGQMTWTE 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL +Q + FQA+RI VN E+ L L LK GG +V+S Sbjct: 176 DLYECLQP--MCKGPRGKKLPAQVFQAIRIAVNRELAVLDSLLVDGANLLKTGGRYVVMS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR VK+FF + A R +F IT+K +V +QE++A N R+RSA Sbjct: 234 YHSLEDRRVKRFFKEGVLEGEAARDDHGRRYE--IFDRITRKPLVASQEEIAINPRARSA 291 Query: 310 KLRAGMRTV 318 KLR + Sbjct: 292 KLRVVEKIE 300 >gi|296448271|ref|ZP_06890165.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b] gi|296254223|gb|EFH01356.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b] Length = 338 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 145/332 (43%), Positives = 195/332 (58%), Gaps = 9/332 (2%) Query: 12 AIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPF 69 + H+PVLL++ +A L P G V LDATFGAGGY+R+ + V+ALDRDP Sbjct: 2 TMPPEQPMRHIPVLLDEAMAALGPRSGGVYLDATFGAGGYTRALLAHENTRVLALDRDPR 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A+ G + + +L +A FS+L +DG+V D+GVSSMQ D +RGFS Sbjct: 62 AIRDGAALVAAAGGRLTLVEARFSELAQVAGRTGLAPLDGIVADIGVSSMQFDEAERGFS 121 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ GPLDMRM SG SA+D+V +A + L IL GEE+ + RIA AIV R + Sbjct: 122 FRNDGPLDMRMEGSGRSAADIVAEAEEEALADILYHYGEERASRRIARAIVHARLERKIE 181 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+++I++ + IHPAT+SFQALRI VN+E+ EL L AE+ALK GG L+ Sbjct: 182 TTGALAAIIERAA-PGRPGEIHPATKSFQALRIAVNDELGELVAALAGAERALKPGGKLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNR 304 +VSFHSLEDR+VK+F A RSG+ +P P I K + P++ ++A N Sbjct: 241 IVSFHSLEDRIVKQFLAERSGRGETRSRRLPGEPVPPPPTFIVDDFKPLAPSEREIAANP 300 Query: 305 RSRSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 RSRSA+LR RT D+ L RLP Sbjct: 301 RSRSARLRVATRTDAPPRPVGDALARLARLPE 332 >gi|189501435|ref|YP_001960905.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1] gi|263445802|sp|B3EQC6|RSMH_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189496876|gb|ACE05424.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1] Length = 332 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 170/317 (53%), Gaps = 19/317 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDPF 69 H+PV++ +V+A L + +D T G GG+S + + GS +I +D+D F Sbjct: 5 AYHLPVMVREVVAWL-VRRAGIYVDGTLGGGGHSLAILRALRDKGLEKGSFLIGIDQDSF 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCG 121 A++ + T+ ++E+ L Q F ++ D V V G++ DLGVSS QID Sbjct: 64 AIAEAERTLASFRERTRLVQGNFREIADIVSTLRENQLRGMEVAGILLDLGVSSFQIDTS 123 Query: 122 DRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ +SGPLDMRM G SA+D+VN ++L I GEEK++ RIA AI R Sbjct: 124 ERGFSYLRSGPLDMRMEPDEGQSAADIVNTFEERELADIFFRFGEEKKSRRIASAICSWR 183 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + I ++V + +I +R FQALRI VN+E+ L L+ +L Sbjct: 184 NERGVIRGTQDLAAIVRSVVSVPDQQIKSLSRIFQALRIAVNDELGALESALKEGAASLS 243 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299 G + V+S+HS+EDR+VK +F + + + + + H A F +T+K ++ ++ Sbjct: 244 PQGRMAVMSYHSIEDRMVKHYFRTLAADDWGPKGVALREPLHKAAFTLVTRKALIAGDDE 303 Query: 300 VAFNRRSRSAKLRAGMR 316 V N R+RSAK+R R Sbjct: 304 VNENSRARSAKMRVIER 320 >gi|291300155|ref|YP_003511433.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM 44728] gi|290569375|gb|ADD42340.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM 44728] Length = 336 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 189/327 (57%), Gaps = 10/327 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IA 63 M + HVPV E+V LL P P V +DAT GAGG+S + + ++ I Sbjct: 1 MMTKYGAPDRAHVPVFAERVCQLLAPAFDRPDPVCVDATLGAGGHSLALLEAHPSLTVIG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +DRDP A+ + + + ++F +A + +L + + + + G++FDLGVSSMQ+D Sbjct: 61 IDRDPDALELAGKRLARFGDRFRPARAVYDELDEVLDETGVDQISGILFDLGVSSMQLDV 120 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGF++ + PLDMRM G++A++VVN +DL+RIL I GEE+ A RIA +IV + Sbjct: 121 AERGFAYAQDAPLDMRMDQSQGMTAAEVVNSYAERDLSRILRIYGEERFAPRIAKSIVAQ 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ AP +++++L+ L++ V ++ +P+ R+FQALRI VN E++ L L A A Sbjct: 181 RKRAPIESSRELADLVRDAVPAATRRRGGNPSKRTFQALRIEVNRELDVLRDALPRAIDA 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G ++V+S+HSLEDR+VK+ R+ I + +TK P++ Sbjct: 241 LAPDGRIVVLSYHSLEDRIVKRELGERTKSSAPAGLPIDVPGTEPTLRWLTKGAQPPSEA 300 Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDD 325 ++A N R+ SAKLRA + R+ + D Sbjct: 301 EIAANPRAASAKLRAAQKLGGRNQDHD 327 >gi|332882630|ref|ZP_08450242.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679430|gb|EGJ52415.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 304 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 159/314 (50%), Gaps = 17/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + +I H+PVLL++ I L PG +D TFG GG+SR + A D+D Sbjct: 1 MSDSISYHIPVLLKQSIDGLAIKPGGTYVDVTFGGGGHSREILNRLGENGRLYAFDQDAD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + +F+L F L+ Y+ VDGV+ D GVSS Q D +RGFS Sbjct: 61 ALNNTID-----DPRFTLIHQNFKYLKQYLRFYGVSEVDGVLGDFGVSSHQFDVAERGFS 115 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ +A VVN+ + LTRI + GE K A IA AI+ RQ P Sbjct: 116 TRFEGALDMRMNQQSELTAQQVVNEYDEAALTRIFSLYGELKNARAIARAIIAFRQHTPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L ++ + K N+ + +Q++RI VN E+E L L +K GG + Sbjct: 176 RLGSTLQEAVRAFLPKFKENK--VLAQIYQSIRIEVNAEMEVLESFLLQLPAVVKVGGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + +++P + ++ N R Sbjct: 234 SLISYHSLEDRCVKRFIRDGQMEGAPEKDWYGNVSVP--FKKV-GGLILPDEAEITINNR 290 Query: 306 SRSAKLRAGMRTVE 319 +RSAKLR R + Sbjct: 291 ARSAKLRIAERIND 304 >gi|260910904|ref|ZP_05917546.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472 str. F0295] gi|260634961|gb|EEX53009.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472 str. F0295] Length = 319 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 17/320 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 + I G HVPVLL + + LN G V +D TFG GG++ + + + D+ Sbjct: 3 NDNITTAQGYHVPVLLAESVDALNIFKGGVYVDVTFGGGGHTCHILSKMDATARLFSFDQ 62 Query: 67 DPFAVSCGQETMRD------YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQ 117 D A + + +F+ ++ F L +++ GV+ ++ DLGVSS Sbjct: 63 DADAEENTRREGSEGQSPLANDNRFTFVRSNFRYLDNWMRYYGVEHVDGILADLGVSSHH 122 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFSF+ PLDMRM+ + +A+ V+N + + L + + GE +Q+ RIA AI Sbjct: 123 FDDQERGFSFRFDAPLDMRMNKNATLTAAQVLNTYDEEKLADVFFLYGEIRQSRRIASAI 182 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 VK R A TTQ+ +++++ + + + FQALRI VNNE++ L + L++A Sbjct: 183 VKARAKAAVHTTQEFAAIVEPFFKLEREKK--EMAKLFQALRIEVNNEMDALKEMLQAAS 240 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L GG L V+++HSLEDR+VK F + + + + P F + KV+VPT Sbjct: 241 EWLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPT 298 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++ N RSRSAKLR + Sbjct: 299 ADEQLRNPRSRSAKLRIAEK 318 >gi|218437172|ref|YP_002375501.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424] gi|263447401|sp|B7K9F0|RSMH_CYAP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218169900|gb|ACK68633.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424] Length = 299 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 25/316 (7%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62 S S ++ H+PVL +++I L+ PG LDAT G GG+SR + V Sbjct: 2 SKVLQMSTVNSLAFIHIPVLTQELIKGLDICPGGHYLDATVGGGGHSRQILETYGDVQVT 61 Query: 63 ALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 A+DRD A++ + DY ++ + + F+ + DG++ DLGVSS Q+D Sbjct: 62 AIDRDEVAIAAATTNLADYNTDRLTFWTGNFADYD--PGNLKFDGIIADLGVSSPQLDSP 119 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF+ PLDMRM +A+D++N + +L + GEE+ + +IA IVK Sbjct: 120 ERGFSFRLDAPLDMRMDRRQSTTAADIINSYSEIELANLFYNYGEERLSRQIAKQIVK-- 177 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q F TT+ + + + RIHPATR FQ LRI VN E++ L L + LK Sbjct: 178 QRPFFSTTELAEVISRSVPPKYRYGRIHPATRVFQGLRIAVNQELDSLESFLAKSPSWLK 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G++ ++SFHSLEDR+VK + + + +TKK ++P ++ Sbjct: 238 TNGIIGIISFHSLEDRIVKHQLRAS-----------------PLLKVLTKKPIIPQSDEQ 280 Query: 301 AFNRRSRSAKLRAGMR 316 A N RSRSAKLR R Sbjct: 281 AKNPRSRSAKLRLAQR 296 >gi|34556618|ref|NP_906433.1| S-adenosyl-methyltransferase MraW [Wolinella succinogenes DSM 1740] gi|42559439|sp|Q7MSS6|RSMH_WOLSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34482332|emb|CAE09333.1| conserved hypothetical protein CJ0693C [Wolinella succinogenes] Length = 303 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 160/304 (52%), Gaps = 8/304 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+ VL +V+ + P +D T G GG+S + K +I +D+DP A+ Sbjct: 1 MESPHLSVLKNEVLEIFAPLSEGYFIDCTLGFGGHSEAILKAHPKLSLIGIDQDPHALEF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q+ + +K++FS + FS++ + + + G++ D+GVSS+Q+D RGFSF Sbjct: 61 SQKRLAPFKDRFSFREGRFSEVLPTLKELPIAGILADIGVSSLQLDDSSRGFSFHSERLD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 + +SA +VVN L RI GE K++ ++ I + R+ + + LS Sbjct: 121 MRMNPNAQLSALEVVNSYPQDRLERIFKEYGEIKESKKLVSLISEERKKGRITSAEALSR 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI++ +F + IHPAT +FQA+RI VN+E+ E+ + L++ + G + ++SFHSL Sbjct: 181 LIER--HFKRVGNIHPATLAFQAIRIEVNDELGEIGRALQTIGEIA--KGRVSIISFHSL 236 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDRLVK FF S + + Q +TKK +V T E+ N RSRSAK+ Sbjct: 237 EDRLVKNFFKEWSNSCLCPPEAFRCTCGNNHEKGQILTKKPLVATPEESKANPRSRSAKM 296 Query: 312 RAGM 315 RA Sbjct: 297 RAFE 300 >gi|139473295|ref|YP_001128010.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str. Manfredo] gi|54037825|sp|P65432|RSMH_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54037826|sp|P65433|RSMH_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041488|sp|P65431|RSMH_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909223|sp|Q48RZ0|RSMH_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826830|sp|A2RD40|RSMH_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831446|sp|Q1JAG5|RSMH_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831450|sp|Q1JKL7|RSMH_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831454|sp|Q1JFK8|RSMH_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134271541|emb|CAM29765.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str. Manfredo] Length = 316 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A +VVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + F+ +++K ++P+ ++ N+R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHSELTANKRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|238019059|ref|ZP_04599485.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748] gi|237864314|gb|EEP65604.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748] Length = 310 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 157/309 (50%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72 +H VLL + + + P + +D T G G++ + +I LD+D A+S Sbjct: 1 MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D Q FS L++ + + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 61 VARQRLSDLTCQVLTIPTNFSNLKEALHNEGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM ++A +VVN+ + L +I+ GEE+ A RI I+ RQ TT Sbjct: 121 DGPLDMRMDKDAPLTAEEVVNEYDADALLQIIRDYGEERWAKRIVEFIINARQEKRITTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 181 GELVRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + + K + P+ ++ N R+R Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPELPMCVCNHKAVVKAKNKAIEPSAGEIEVNPRAR 300 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 301 SAKLRVAVK 309 >gi|262831458|sp|Q1J5F8|RSMH_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A +VVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + F+ +++K ++P+ ++ N+R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSRKPILPSHSELTANKRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|167035511|ref|YP_001670742.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1] gi|262825111|sp|B0KFT4|RSMH_PSEPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166861999|gb|ABZ00407.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1] Length = 315 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G+ GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPGQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F G+ + +P + I K ++ ++ N RSR Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLI-GKAQFASEAELKANPRSR 304 Query: 308 SAKLRAGMR 316 SA +R + Sbjct: 305 SAVMRVAEK 313 >gi|325275020|ref|ZP_08141013.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51] gi|324099848|gb|EGB97701.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51] Length = 315 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G+ GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G+SA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F G+ + +P + I K ++ ++ N RSR Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKVKLI-GKAQFASEAELKANPRSR 304 Query: 308 SAKLRAGMR 316 SA +R + Sbjct: 305 SAVMRVAEK 313 >gi|229815097|ref|ZP_04445434.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM 13280] gi|229809327|gb|EEP45092.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM 13280] Length = 325 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L++V+ L PG V+ D T G G+S + + ++ +D+D A++ + Sbjct: 16 HEPVMLQEVLEQLQLKPGSVVCDCTLGGAGHSVRMAERVGSEGLLLGVDQDDMALAAAGK 75 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + L + F L + + V G +FDLGVSS Q+D RGFS+ + Sbjct: 76 RLDAEAPDTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDA 135 Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTT 188 PLDMRM + ++V+N DL RIL I GEEK A +IA + +R++S T Sbjct: 136 PLDMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREVVRRRQESPLVSTG 195 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ ++ + HPA RSFQA+RI VN+E++ L +GL +A + L GG + V+ Sbjct: 196 DFVDAIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAIRWLNPGGRVCVI 255 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK+ F S + + + + T+K +V T E+V N R+R Sbjct: 256 SYHSLEDRIVKRLFQELSKGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVERNPRAR 315 Query: 308 SAKLRAGMR 316 SAK+R R Sbjct: 316 SAKIRCAER 324 >gi|260893420|ref|YP_003239517.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4] gi|260865561|gb|ACX52667.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4] Length = 291 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 171/306 (55%), Gaps = 26/306 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 ++++V+A L PG V +D T G GG++ + +I LDRDP A+S ++ + Sbjct: 1 MVKEVLAYLAVKPGGVYVDCTVGGGGHAAAILAFIGDEGRLIGLDRDPEALSFARKRL-G 59 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L A+F+ L + + +GVDGV++DLGVSS Q+D +RGF++++ PLDMR Sbjct: 60 NDPRVHLVHASFADLAEVLAGLGVRGVDGVLYDLGVSSYQLDRPERGFTYREDAPLDMRF 119 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S +A+D+VN+ K+L I+ GEE+ A RIA IV+ R P TT L +I+ Sbjct: 120 DPSSPVTAADLVNRLEEKELACIIREFGEERWAKRIARFIVRARARRPILTTGQLVEIIK 179 Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + ++ HPA R+FQALRI VN E+E L L A LK GG L+V+S+HSLED Sbjct: 180 EAIPASARRRGPHPARRTFQALRIAVNRELEALKASLPQAADCLKPGGRLVVLSYHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK FF + + +TKK + P+ E+V N R+ S KLRA Sbjct: 240 RLVKGFFRQYT-----------------CLRPLTKKPLTPSPEEVKQNPRASSCKLRAAE 282 Query: 316 RTVERS 321 + + Sbjct: 283 KILNPE 288 >gi|320535363|ref|ZP_08035477.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421] gi|320147765|gb|EFW39267.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421] Length = 317 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 163/306 (53%), Gaps = 8/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLL++ ++LL PA +D T G GG++ +F K + I +D DP + + Sbjct: 5 HKSVLLQESLSLLKPASEDTLFVDGTLGEGGHTEAFLKTYPQLSAIGIDADPTIQAKAKL 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + + F + ++FDLG+S RGFSFQ PLD Sbjct: 65 RLQPFASRVQYFSGWSDDFFKNYSTEYPKPNIILFDLGISMFHYIESGRGFSFQAEEPLD 124 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ + +SA++++N ++L I GEE+ + +IA AI RR+ F+T DL+ Sbjct: 125 MRINPATSLSAAEIINTYKEEELASIFYTYGEERFSRKIAGAICLRRKEQEFKTAGDLAE 184 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I K V ++ RIHPATRSFQALRI VN E++ L L+ A + L G L V+SFHS Sbjct: 185 VIFKAVPPAYRHGRIHPATRSFQALRIKVNGELDRLPDLLKLAFQRLALNGKLGVISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK++F + M + Q +T K V+PT E++ N SRSAKL Sbjct: 245 LEDRIVKRYFRDLAKNCRCPPEMPICKCGGRPLAQLLTGKPVIPTDEEIRVNPASRSAKL 304 Query: 312 RAGMRT 317 RA + Sbjct: 305 RAVKKI 310 >gi|282889763|ref|ZP_06298302.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500337|gb|EFB42617.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 310 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VL+++VI +P ++ +D T GAGG+S + +IA+D+DP A++ E Sbjct: 5 HQSVLMKEVIESFSPCSLRIFIDGTAGAGGHSAALLATHPEIERLIAIDQDPLALTVAAE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ + F L+ ++ VDG++ DLGVSSMQ+D ++GFSF K GPL Sbjct: 65 NLAPWSEKVTFVSGNFENLEKFLDQLEISTVDGILLDLGVSSMQLDIAEKGFSFSKEGPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A+ VVN K+L RI GEE+ A AIV+ R TTQ L Sbjct: 125 DMRMDPRNPLTAAIVVNTWPQKELERIFRDYGEERHWRAAARAIVQARAEKQILTTQQLV 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + F+ RIHP T FQALRI VN E++ + + + +A + LK GG L ++SFHS Sbjct: 185 EVLRPVLRFNPAKRIHPCTLVFQALRICVNKELDVVERVIPAAIRRLKKGGRLGIISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LED +VK F + R + + +T+K +V E+VA N RSRSAKL Sbjct: 245 LEDGIVKNLFRHAASDKWDTRGLAGLFRDKDPEVRLLTRKPLVANDEEVAANPRSRSAKL 304 Query: 312 RAGMR 316 R + Sbjct: 305 RVLEK 309 >gi|170720122|ref|YP_001747810.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619] gi|262825121|sp|B1J1Y2|RSMH_PSEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169758125|gb|ACA71441.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619] Length = 315 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAERGLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIRLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|242238092|ref|YP_002986273.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703] gi|263446348|sp|C6C9K0|RSMH_DICDC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|242130149|gb|ACS84451.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703] Length = 313 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 173/314 (55%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP AVS Sbjct: 3 ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGTDGQLLAIDRDPQAVS 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 AASAI---HDARFSIIHGPFSSLADYVAERGLVGRIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPSRGVSAAEWLMNAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + HPATRSFQA+RI++N+E++E+ + L A + L G L V Sbjct: 180 TKALAELI-AAACPIREKHKHPATRSFQAIRIYINSELDEIERALEGALQVLAPHGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-----VFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + A +++ K ++P++ +V Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLKSQGGRTLKAVGK--MMPSESEVGE 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRFAER 310 >gi|298372234|ref|ZP_06982224.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274 str. F0058] gi|298275138|gb|EFI16689.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274 str. F0058] Length = 297 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 161/306 (52%), Gaps = 17/306 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVPVLLE+ I L P V +D TFG GG+SR+ + D+D A Sbjct: 2 YHVPVLLEESIECLRIKPDGVYVDCTFGGGGHSRAILARLGNKGKLYGFDQDREAYRNTT 61 Query: 76 ETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + E+F+ + F S Y + VDG++ DLGVSS D +RGFS++ G Sbjct: 62 D-----DERFTFVRGNFKYISNFLRYYGEDKVDGILADLGVSSHHFDEAERGFSYRFDGT 116 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +A +++N + + L IL + GE + A RIA+AIV RRQ+ +T +L Sbjct: 117 LDMRMNREASFTAEELINGYDEQALADILYLYGELRNARRIANAIVCRRQTKAIKTIFEL 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + +K FQA+RI VN E++ L L + L++GG + V+S+H Sbjct: 177 TEVLRP--FCTKGKEYKELAPIFQAIRIEVNAELDSLKTLLCRSVDLLRSGGRIAVISYH 234 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + P F +++ K +V ++A N R+RSA+L Sbjct: 235 SLEDRLVKNFLKTGNFGGEPQKDFYGNQITP--FANVS-KAIVSNDREIADNPRARSARL 291 Query: 312 RAGMRT 317 R + Sbjct: 292 RYAEKI 297 >gi|327313078|ref|YP_004328515.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289] gi|326945605|gb|AEA21490.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289] Length = 314 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 16/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M+ HVPVLL + I LN G + +D TFG GG+SR + GS++ + D Sbjct: 1 MTRT---AETYHVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFD 57 Query: 66 RDPFAVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDC 120 +D A + ++F+ ++ F L++++ V + + DLGVSS D Sbjct: 58 QDADAEQNIGRMGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSF+ PLDMRM+ G++A+D++N+ + + L IL + GE KQ+ RIA AIVK Sbjct: 118 ETRGFSFRFEAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKG 177 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ ++TT DL + +F + + FQALRI VN E++ L + L +A L Sbjct: 178 REQKAYKTTNDLLVITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLL 235 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L V+++HSLEDR+VK S + + + P F+ + KV+ ++ Sbjct: 236 SPGGRLSVITYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDE 293 Query: 300 VAFNRRSRSAKLRAGMRTVER 320 N RSRSAKLR + + Sbjct: 294 QERNPRSRSAKLRIAEKKSDE 314 >gi|268680046|ref|YP_003304477.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM 6946] gi|268618077|gb|ACZ12442.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM 6946] Length = 304 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 97/304 (31%), Positives = 154/304 (50%), Gaps = 8/304 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVLLE+V A + VI+D T G GG+S + + +I D+D A++ ++ Sbjct: 4 PHIPVLLEEVKAAFSNISDGVIIDCTLGYGGHSEALLEQNPHIRLIGCDQDEEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + E+ F+ + + G++ D+GVSS+Q+D +RGF+F Sbjct: 64 RLERFGERVMFHHGNFASVIAQYAHLPIRGILADIGVSSLQLDKKERGFAFDSEVLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA +VVN + L I GE ++A + + R AP Q+ ++LS L Q Sbjct: 124 NPHQSLSAYEVVNHYTKEQLEFIFREYGEIHAYQKMAQLMCEARLKAPIQSAKELSFLAQ 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K IHPAT FQA+RI VNNE+ L Q L S + A ++ ++SFHSLEDR Sbjct: 184 K---IPGKKSIHPATLLFQAIRIEVNNELGVLTQLLESIQNAGFTQCIVGIISFHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK+ F S + H+ + A+ + I+KK + + ++ N RSRSA+LR Sbjct: 241 IVKQTFKFWSQNCICPPHVMRCMCGNNHALGKIISKKPIEASPLELKKNPRSRSARLRVF 300 Query: 315 MRTV 318 + Sbjct: 301 -KIE 303 >gi|257483456|ref|ZP_05637497.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624974|ref|ZP_06457928.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647032|ref|ZP_06478375.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi str. 2250] gi|298488527|ref|ZP_07006557.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156868|gb|EFH97958.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868707|gb|EGH03416.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987126|gb|EGH85229.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011570|gb|EGH91626.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 313 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|110639131|ref|YP_679340.1| S-adenosyl-methyltransferase MraW [Cytophaga hutchinsonii ATCC 33406] gi|122966614|sp|Q11RG6|RSMH_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110281812|gb|ABG59998.1| S-adenosylmethionine methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 298 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 HVPVLL++ + LN P + +D TFG GG+SR K G + A D+D AV ++ Sbjct: 2 YHVPVLLKESVEGLNINPEGIYVDVTFGGGGHSREILKHLKGGKLYAFDQDADAVDNAKD 61 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F+L A F ++ Y VDG++ DLG+SS QID +RGFS + PL Sbjct: 62 LI---GPNFTLIPANFRYIKKYLRLNGVDKVDGLLGDLGISSHQIDTPERGFSIRYDAPL 118 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A+D++N+ + L ILG+ GE + A +A A+VK R + P T +L Sbjct: 119 DMRMDRAIDKTAADIINKYSEHGLHSILGMYGEVRNAKTLAQALVKERINKPINRTSELI 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K ++ + FQALRI VN E+E L L +++ LK+GG L ++S+HS Sbjct: 179 EVLSDYAPRGKESK--YYAQVFQALRIEVNEELEALKDLLEQSQQVLKSGGRLSIISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A + + + P F+S+ K + P E+ N R+RSA+LR Sbjct: 237 LEDRLVKNFVQQGKFHGDAEKDLYGNTNKP--FKSV-GKAIDPDDEEKERNNRARSARLR 293 Query: 313 AGMR 316 R Sbjct: 294 IAER 297 >gi|325856519|ref|ZP_08172208.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A] gi|325483488|gb|EGC86461.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A] Length = 314 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 169/321 (52%), Gaps = 16/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M+ HVPVLL + I LN G + +D TFG GG+SR + GS++ + D Sbjct: 1 MTRT---AETYHVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFD 57 Query: 66 RDPFAVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDC 120 +D A + ++F+ ++ F L++++ V + + DLGVSS D Sbjct: 58 QDADAEQNIGRMGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSF+ PLDMRM+ G++A+D++N+ + + L IL + GE KQ+ RIA AIVK Sbjct: 118 ETRGFSFRFEAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKG 177 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ ++TT DL ++ +F + + FQALRI VN E++ L + L +A L Sbjct: 178 REQKAYKTTNDLLAITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLL 235 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L V+++HSLEDR+VK S + + + P F+ + KV+ ++ Sbjct: 236 SPGGRLSVITYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDE 293 Query: 300 VAFNRRSRSAKLRAGMRTVER 320 N RSRSAKLR + + Sbjct: 294 QERNPRSRSAKLRIAEKKSDE 314 >gi|328955350|ref|YP_004372683.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2] gi|328455674|gb|AEB06868.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2] Length = 321 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 175/320 (54%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H PV++ +V+ L P VI+D T G G++ + +I +D Sbjct: 1 MANGTLTPEYQHEPVMVAEVLEALRPEESSVIVDCTLGGAGHAVRLAREMGPEGQLIGID 60 Query: 66 RDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +D A++ + L + F L + + GVDG +FDLGVSS Q+D Sbjct: 61 QDDMALNSAAARLDREVPGVAHRLMKGNFRDLDELLCAAEVPGVDGFLFDLGVSSPQLDI 120 Query: 121 GDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ + PLDMRM G SA+DVVN + +L RIL GEE+ A IA IV+ Sbjct: 121 PNRGFSYHEDAPLDMRMDPQSGGPSAADVVNGYSEAELIRILHAFGEERFAGAIAREIVR 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RR++ P TT +L +I+ + + + HPA RSFQA+RI VN+E++ L GL++A + Sbjct: 181 RRKTKPISTTTELVEVIKAAIPAAARRQGPHPARRSFQAIRIEVNHELDALLIGLQAALR 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296 L G + V+S+HSLEDR+VK+ F S S + + + + ITKK +V T Sbjct: 241 WLNPAGRICVISYHSLEDRIVKRLFQSASRGCTCPPDIPVCVCGNVPILKVITKKPLVAT 300 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 E+V N RSRSAK+R M+ Sbjct: 301 TEEVERNPRSRSAKIRVAMK 320 >gi|170078284|ref|YP_001734922.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002] gi|262825754|sp|B1XP73|RSMH_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169885953|gb|ACA99666.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002] Length = 290 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 24/300 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+ VL E+++A L P LD T G GG++ + V +DRD A++ E Sbjct: 6 KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++F ++ F + Q DG++ DLGVSS+Q D GDRGFSF+ PLDMR Sbjct: 66 RLKSFGDRFRAVRSNFGEYQPQGEK--FDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123 Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M +A+D+VN K L + G+E+ + +IA IV + T + + Sbjct: 124 MDQQQTLTAADIVNTYEEKALANLFYEYGDERLSRQIAKKIV--MKRPIQTTKELEEIVF 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ +IHPATR FQALRI VN E++ L L +A + LK G L ++SFHSLED Sbjct: 182 YTYHPKARKVKIHPATRVFQALRIAVNGELDALQYLLVNAPQWLKPQGRLGIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK F R +++ +TKK +V ++ ++ N R+RSAKLR Sbjct: 242 RLVKNAFRQRD-----------------IWRILTKKPMVASETEINQNPRARSAKLRFAE 284 >gi|311748596|ref|ZP_07722381.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1] gi|126577120|gb|EAZ81368.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1] Length = 303 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 15/308 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H+PV+L + L P + +D TFG GG+SR K ++ D+D A++ Sbjct: 3 ESVYHIPVMLPQCTEGLAIDPNGIYVDVTFGGGGHSREILKHLDKGHLYGFDQDEDAIAN 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E F+ QA F L+ Y K VDG++ DLG+SS QID RGFS + S Sbjct: 63 -----IPESENFTFVQANFRDLKRYLRLHGVKKVDGILADLGISSHQIDEPSRGFSTRFS 117 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 G LDMRM+ S +SA +V+N L ++ GI GE + A +A A+V R + PF+TT+ Sbjct: 118 GDLDMRMNQSAELSAKEVLNTYEAHQLHKVFGIYGEIRNAKTLAQAVVSERAAQPFETTE 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ ++K K+ + + FQALRI VN+E+ L + L + LK G L+V+S Sbjct: 178 GFTAFLKKYAPRGKDFK--YYAQVFQALRIEVNDEMGALEEMLLDSVDLLKPEGRLVVMS 235 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK + + + P + +T+K V+ +E+VA N R+RSA Sbjct: 236 YHSLEDRLVKNLIQKGKFQGEVEKDFYGNMIRP--LEPVTRKAVIADEEEVARNPRARSA 293 Query: 310 KLRAGMRT 317 KLR +T Sbjct: 294 KLRVAKKT 301 >gi|42526707|ref|NP_971805.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405] gi|85701364|sp|P62477|RSMH_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|41817022|gb|AAS11716.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405] Length = 315 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 8/307 (2%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLLE+ + L P A + +D T G GG++ +F K + I +D D +E Sbjct: 5 HTSVLLEECLEFLKPDASDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + E+ + P + ++ DLG+S RGFSF PLD Sbjct: 65 RLKPFGERIRFHLGWSDEFFKNYPKDFAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ +SA+D+VN N KDL ++ GEE+ + +IA IV++R +A F ++L+ Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSNAKELAD 184 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I K V ++ +IHPAT++FQALRI VN E++ L + L +A L G L +++FHS Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK +F +M + +TKK V + E++ N SRSA+L Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304 Query: 312 RAGMRTV 318 R + Sbjct: 305 RVVRKID 311 >gi|206889537|ref|YP_002249141.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii DSM 11347] gi|262825898|sp|B5YFU3|RSMH_THEYD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206741475|gb|ACI20532.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii DSM 11347] Length = 292 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 26/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PV++++VI LLNP G + +DAT G GG+S + K +I +DRD A+ Sbjct: 7 HIPVMVKEVIQLLNP-YGGIYVDATLGCGGHSLAILKRLSPDGRLIGIDRDESAIFYANR 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + L +A+FS L++ + + + +DG++FDLGVS +Q+ +RGFSF L Sbjct: 66 ILDDSR--VILRKASFSHLKEVLSELNIEKIDGIIFDLGVSMLQLKDFERGFSFHSEERL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A DVVN+ + LT+I G+E A RIA I+++R T ++L+ Sbjct: 124 DMRMDQTEPLTAWDVVNKYPEQKLTQIFRDYGDEPFARRIAREIIRQRGKKTIDTCKELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++KTV ++ R+HPAT+ FQA+RI VN E EEL QGL A + L +GG + V+S+HS Sbjct: 184 DLVKKTVP--RHGRLHPATQIFQAIRIEVNREFEELRQGLLQAVELLNSGGRICVISYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK FF + +TKK ++P+ E+VA N +RSA+LR Sbjct: 242 GEDRVVKNFFRE--------------EEQKGNLRILTKKPLLPSLEEVAKNPSARSARLR 287 Query: 313 AGMRT 317 G + Sbjct: 288 GGEKI 292 >gi|172035001|ref|YP_001801502.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. ATCC 51142] gi|263446171|sp|B1WZ70|RSMH_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171696455|gb|ACB49436.1| putative methyltransferase [Cyanothece sp. ATCC 51142] Length = 315 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 162/324 (50%), Gaps = 29/324 (8%) Query: 1 MESKSCKTMSSAIHHTIGD----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK 56 + S + M++ H + H PVL ++VI L P LDAT G GG+SR + Sbjct: 10 LSSVTLIVMTNTDHPNQPNPPHLHTPVLCQEVIDGLAIEPNGHYLDATLGRGGHSRLILE 69 Query: 57 MGS--NVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 V +D D A++ QE + + ++Q F+ + + +G++ DLGV Sbjct: 70 AFPDVRVTGIDLDEEAIAITQENFSLMGDKRLQVWQGNFADYPGEIGE--FNGIIADLGV 127 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRI 172 SS Q D +RGFSF+ PLDMRM+ ++A +++N + L + GEE+++ I Sbjct: 128 SSPQFDVPERGFSFRHQAPLDMRMNREQSLTAGEIINHWDQTSLADLFYQYGEERRSRAI 187 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 A +V+ Q TT+ ++ + + RIHPATR FQALRI VN+E+ L + L Sbjct: 188 ARRLVQ--QRPFETTTELAEAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFL 245 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A LK GG + ++SFHSLEDR VK F + ITKK Sbjct: 246 EKAPHWLKPGGRIGIISFHSLEDRRVKYSFRDSL-----------------LLDVITKKP 288 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 ++P E+ N RSRSAKLR R Sbjct: 289 IIPQPEEEEKNPRSRSAKLRFAQR 312 >gi|238026124|ref|YP_002910355.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1] gi|237875318|gb|ACR27651.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1] Length = 313 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 180/316 (56%), Gaps = 19/316 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H VLL++ + L P V +D TFG GG+SR+ G +IA D+DP A++ Sbjct: 3 TEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPLAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q+ +FS+ +F+ L + ++ V GV+ DLGVSS QID +RGFSF+ Sbjct: 63 TAQQIA---DPRFSIVHDSFASLGGALAERGVARVTGVLLDLGVSSPQIDDPERGFSFRA 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----P 184 +GPLDMRM G SA+D + +A++++LT ++ GEE+ A +IA A+V RR+ + P Sbjct: 120 NGPLDMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARREESDRLGP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+ ++ V ++ PATR+FQA+RI VN E+ +L L +A +L+ GG Sbjct: 180 LDSTGELAQIVGHAV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLGAALSSLEQGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAF 302 L+V+SFHSLEDR+VK+F + + R + + + + +K P+ +V Sbjct: 239 LVVISFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGRKF--PSDAEVDA 296 Query: 303 NRRSRSAKLRAGMRTV 318 N R+RSA +R R Sbjct: 297 NPRARSAVMRIAERVA 312 >gi|152990774|ref|YP_001356496.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2] gi|262824663|sp|A6Q3T0|RSMH_NITSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151422635|dbj|BAF70139.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2] Length = 302 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 156/305 (51%), Gaps = 11/305 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H PVLL +V+ I+DAT G GG+S + K ++ +D+D A++ Sbjct: 1 MNAPHKPVLLNEVLESFKDRK-GTIVDATLGYGGHSEALLKSNPDIKIVGIDQDSEAIAF 59 Query: 74 GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + Y ++ + Q F+ ++D + V GV+ D+GVSS+Q+D DRGFS Sbjct: 60 SKQRLASYGDRVQIIQGRFADVIEDILQTHDVQGVLADIGVSSLQLDKKDRGFSIHSENL 119 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 + +SA VVN + ++L RI GE + + ++A AI+ R +++ Sbjct: 120 DMRMDQNAELSAYHVVNTYDEEELKRIFKEYGEIRHSGKLAKAIIHNRPIQSATQLAEIA 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 KN R+HPAT FQA+RI VN E+++L L + E+ G + +++FHS Sbjct: 180 Q-----KILPKNKRVHPATTLFQAIRIEVNKELDQLKGLLDALERHKPKGAKVAIITFHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ F + + A+ A+ +TKK +V + +++ N R+RSAK Sbjct: 235 LEDRIVKQHFKEWAKSCICPPEAMRCTCGANHALGNIVTKKPIVASIDELEENPRARSAK 294 Query: 311 LRAGM 315 LR Sbjct: 295 LRVFQ 299 >gi|313500445|gb|ADR61811.1| MraW [Pseudomonas putida BIRD-1] Length = 315 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G+ GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKAFEPKIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|221065130|ref|ZP_03541235.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1] gi|220710153|gb|EED65521.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1] Length = 309 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAEPPAGQWVDATFGRGGHSRLILRRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + + V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 EAARI---TDARFSIRHEGFRHLSELP-EGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S ++ + A V+ + ++ GEE+ A IA AIV RR+S T Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SFH Sbjct: 183 LAQLVAGAVKTREAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P+ +VA N RSRSA + Sbjct: 243 SLEDRIVKQFIAKHSKEV-YDRRAPFAPPTPMRLKALER--IKPSAAEVAANPRSRSAVM 299 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 300 RVAERTEVPA 309 >gi|257791849|ref|YP_003182455.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243] gi|257475746|gb|ACV56066.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243] Length = 318 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARR 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + D + + L + F + + + V V+FDLGVSS+QID RGFSF++ Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126 Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +GPLDMRM + ++++N DLTRI+ +EK ASRIA V+ RQ+AP +T Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQTAPIET 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 ++ L +I+ + S + HPA R+FQALRI VN E++ L GL +A + L GG L+ Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ FA + + + + +T+K V+PT E++ N R Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAQK 317 >gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222] gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222] Length = 322 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 186/323 (57%), Gaps = 8/323 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG 74 H+PVLL ++ + P +D TFGAGGY+R + G+ VI +DRDP Sbjct: 2 AEAPHIPVLLGPLLRAVAPVE-GTWVDGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +Y ++ L + TFS L VDGVV DLGVSSMQ+D +RGFSF + GPLD Sbjct: 61 EAWAGEYGDRLRLVEGTFSDLDSLAG-GPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLD 119 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G +A++++N A + + +L + GEE+ + RIA AIV R P T LS + Sbjct: 120 MRMGGDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAAR---PLSRTGQLSDI 176 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + K + HP+TR+FQA+RI+VN+E +L GL +AE+AL+ GG L VVSFHSLE Sbjct: 177 VSACLPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLE 236 Query: 255 DRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F +RS R+ + F ++ + P + ++A N R+RSA LR Sbjct: 237 DRIVKRFMQARSNSAGGGSRYAPEAAREEPAFTLPFRRAIGPDEAELATNPRARSALLRV 296 Query: 314 GMRTVERSIE-DDSFVHLPRLPT 335 G+RT + D + + LP L Sbjct: 297 GIRTEAPAGRVDPAALGLPLLSE 319 >gi|320530962|ref|ZP_08031995.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399] gi|320136827|gb|EFW28776.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399] Length = 310 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 153/306 (50%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HV VL + +A L+ P +D T GA G++ +I +D+D A++ Q Sbjct: 5 HVSVLPAETVAALSVVPEGTYVDCTLGAAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + SL F L + + VDG++FDLGVSS QID RGFS+ + PL Sbjct: 65 RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA VVN+ + LT + GEE+ A RIA I R+ P +TT +L Sbjct: 125 DMRMDRRAARSAYTVVNEYSAARLTELFYDYGEERWAKRIAAFIEAARKERPIETTGELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + V + HPA R FQA+RI VN E+ L + +A LK GG + V++FH Sbjct: 185 EIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILPDAVTAAVHTLKPGGRIAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ + + H + H + I K + + A N R++SAK Sbjct: 245 SLEDRIVKRTMQQLARGCICPPHTPVCICGHTPELRLI-GKAQTASLAECAANARAKSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRVAEK 309 >gi|50086346|ref|YP_047856.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. ADP1] gi|54036183|sp|Q6F7D1|RSMH_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49532322|emb|CAG70034.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ADP1] Length = 303 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 162/306 (52%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + + L + +D TFG GG++R V D+DP A++ Sbjct: 3 HISVLLHETVDALLANRDTGIYIDGTFGRGGHTRLLLSKLGSDAQVYGFDKDPQALAVAH 62 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ +Q + V+GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 63 Q-LEQEDLRFKIIHASFADIQTELEQRGITQVEGVMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + + L I+ GEE+ + RIA AI + +TT L Sbjct: 122 LDMRMDNSQGKTAAEWLLSIEEEALANIIYQYGEERYSRRIARAIKQA---GALETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V++FH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEIFLPQAVTLLKPEGRLAVITFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + + I++ + ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLPEDSGWGLPQKQVDSRRLKKISR--IRASEEEVKANPRSRSAW 295 Query: 311 LRAGMR 316 LR R Sbjct: 296 LRVAER 301 >gi|303246299|ref|ZP_07332579.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ] gi|302492362|gb|EFL52234.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ] Length = 326 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 175/323 (54%), Gaps = 11/323 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 + H+PVLL++V+ L PG ILDAT G GG+ + + V+ LDRD A+ Sbjct: 2 QHVPTHIPVLLKEVVEYLGIRPGMKILDATAGLGGHIKGMLEAAGGQAEVLGLDRDREAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + Y ++ L + +S+ + + + VD + D G+SS+Q+D +RGF F Sbjct: 62 EEAGRRLAAYGDRVRLVRTRYSRFPAALAEAGWEKVDAALVDAGMSSLQLDDPERGFGFL 121 Query: 129 KSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM G SA +VN A+ L I+ GE+ QA RIA AIV R+ A Sbjct: 122 TDGPLDMRMGAEDGGESAEGLVNLASFARLREIIRNYGEDPQAGRIARAIVAAREKAAIT 181 Query: 187 TTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++ R HPATR+FQALR+ VN+E++EL L + + L GG Sbjct: 182 TTGRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELKELEAFLAAVPEYLATGGR 241 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+SFHSLEDRLVK+ F + + R ++ H A +TKK V+ +E+VA N Sbjct: 242 VAVISFHSLEDRLVKRAFRLEATDCLCPREQVVCVCGHKARLAILTKKPVMAGEEEVAAN 301 Query: 304 RRSRSAKLRAGMRTVERSIEDDS 326 R+RSAKLR R + + D+ Sbjct: 302 PRARSAKLRVARRLPDAAEATDA 324 >gi|251788242|ref|YP_003002963.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591] gi|263446384|sp|C6CJW6|RSMH_DICZE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247536863|gb|ACT05484.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591] Length = 313 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 119/314 (37%), Positives = 171/314 (54%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + L+ + +D TFG GG+SR ++A+DRDP AV Sbjct: 3 ETFKHTTVLLDEAVNGLSIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS+L +YV + +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDARFSIIHGPFSELAEYVEARGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA+D + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAADWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + HPATRSFQA+RI++N+E+EE+ + L A L GG L V Sbjct: 180 TKALAELI-AAASPIREKYKHPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + A +S+ K ++P ++VA Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLRSQGGPTLKSVGK--MMPPDDEVAD 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRFAER 310 >gi|206901857|ref|YP_002250979.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum H-6-12] gi|263447293|sp|B5YEM1|RSMH_DICT6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206740960|gb|ACI20018.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum H-6-12] Length = 297 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 164/315 (52%), Gaps = 27/315 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H PV+L++VI LN +PGK+++DAT G GG+S + +I +DRD Sbjct: 1 MEEVESIHKPVMLKEVIHYLNLSPGKIVVDATLGLGGHSSEILRELRGEGLLIGIDRDEE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 + +E + F LF T+ LQ+ + + +D ++FDLG SS I+ RGFS Sbjct: 61 VLKLARERLSKIAGNFVLFNTTYDNLQNILKELNLSFIDAILFDLGFSSFHIEKSGRGFS 120 Query: 127 FQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 F + +A+D++N + +L+ + GEE + ++A IV+RR+ Sbjct: 121 FMRPEEPLDMRYSKDTALTAADILNTFSESELSNLFWEYGEEPLSKKLAKKIVERRKDKK 180 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F DL +I + + + H AT+ FQALRI VN+E+ + L L GG Sbjct: 181 FAYVGDLLEVIDEVIPRRRR---HEATKVFQALRIAVNDELNIFKRALEQVPFILSIGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+++HSLEDR+VK FF S S K++ ++KKV+ P+ E++ NR Sbjct: 238 IVVITYHSLEDRIVKNFFKSYSDKILP----------------VSKKVIKPSIEEIKENR 281 Query: 305 RSRSAKLRAGMRTVE 319 R+RSAKLR G R Sbjct: 282 RARSAKLRVGERREN 296 >gi|104783461|ref|YP_609959.1| S-adenosyl-methyltransferase MraW [Pseudomonas entomophila L48] gi|122401960|sp|Q1I5B0|RSMH_PSEE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|95112448|emb|CAK17175.1| S-adenosylmethionine methyltransferase MraW [Pseudomonas entomophila L48] Length = 315 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAGRDLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPNQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLETGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F R++ + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKTFEPRIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|282850409|ref|ZP_06259788.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745] gi|282579902|gb|EFB85306.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745] Length = 310 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72 +H VLL + + + P + +D T G G++ + +I LD+D A+S Sbjct: 1 MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D K Q FS L++ + + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 61 VARQRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT Sbjct: 121 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 181 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + + K + P+ ++ N R+R Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 300 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 301 SAKLRVAVK 309 >gi|149371570|ref|ZP_01890986.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49] gi|149355197|gb|EDM43757.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49] Length = 298 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVLL + L P V +D TFG GG+SR K +IA D+D A+ Sbjct: 1 MEYHNPVLLHPTVDGLAIKPDGVYVDVTFGGGGHSREILKRLGPNGKLIAFDQDKDALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F L F L+ + K VDG++ D GVSS Q D +RGFS + Sbjct: 61 VID-----DPRFVLVNENFRFLKRFLRFHGHKQVDGILADFGVSSHQFDVAERGFSTRFE 115 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM SA DVVN L+ +L GE + + IA I ++R++ P +T+ Sbjct: 116 AELDMRMDQGSAFSAYDVVNNYEESQLSSVLFQYGELRASKGIARVICEKRKNGPIKTSD 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L + + + + ++I + +QA+RI VN E+E + + L+ + + L GG L V+S Sbjct: 176 QLKEAVARFLPKHREHKI--LAQIYQAIRIEVNQELEVIKEFLQQSIEVLPVGGRLSVIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+F + + + + P K ++P ++ N R+RSA Sbjct: 234 YHSLEDRLVKRFMRNGMFEGEPEKDVFGRAEVP---MKPVGKFIIPDAAEIKENNRARSA 290 Query: 310 KLRAGMR 316 KLR + Sbjct: 291 KLRIAKK 297 >gi|148549600|ref|YP_001269702.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1] gi|262825108|sp|A5W8Q8|RSMH_PSEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148513658|gb|ABQ80518.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1] Length = 315 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 174/309 (56%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G+ GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F G+ + +P + I K ++ ++ N RSR Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLI-GKAQFASEAELKANPRSR 304 Query: 308 SAKLRAGMR 316 SA +R + Sbjct: 305 SAVMRVAEK 313 >gi|238898853|ref|YP_002924535.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|263456095|sp|C4K744|RSMH_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229466613|gb|ACQ68387.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 311 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 19/314 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 H VLL + + LN + +DATFG GG+S +I++DRDP AV Sbjct: 4 NQHKTVLLYEAVDSLNIQNDGIYIDATFGRGGHSSLILSRLGSQGKLISIDRDPEAVKKA 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +FS Q +FS L YV ++G++FDLGVSS Q+D RGFSF + Sbjct: 64 KLMK---DPRFSFIQGSFSDLYHYVKKLDLMGRINGLLFDLGVSSPQLDDAKRGFSFMRD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM G+SA++ + + NV++L +L GEE+ ++R+A AIV+R + P ++T+ Sbjct: 121 GPLDMRMDPSRGLSAAEWLMKVNVENLAWVLKNFGEERFSTRLARAIVERNRLNPIKSTK 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ LI + +N+ HPATRSFQA+RI++NNE++E++ L +A + L G L VVS Sbjct: 181 ELADLISHVI-PVRNHHKHPATRSFQAIRIYINNELQEISSALNAALEILSLGARLSVVS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S +R + + + I K +P+Q++V N Sbjct: 240 FHSLEDRIVKNFIRQHSRGPQILRGLPLTEIQIQSMWQPKLKLIGK--TMPSQKEVLDNP 297 Query: 305 RSRSAKLRAGMRTV 318 RSRS+ LR R Sbjct: 298 RSRSSILRFAERIN 311 >gi|325102881|ref|YP_004272535.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145] gi|324971729|gb|ADY50713.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145] Length = 302 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 16/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPV+L + I L+ P V +D TFG GG+SR K ++A D+D A Sbjct: 5 YHVPVMLSECIEGLDIKPDGVYVDVTFGGGGHSREIIKHLGEDGVLVAFDQDVDAQQN-- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R ++F F L++ VDG++ DLGVSS Q D +RGFS + G Sbjct: 63 ---RIADDRFVFIDQNFRYLKNNLRLHGLAPVDGILADLGVSSHQFDVPERGFSIRFDGD 119 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG +A V+ + + ++L +I GI GE + A +A IV R + T +DL Sbjct: 120 LDMRMDQSGELTAKKVIGEYSEEELHKIFGIYGEIQNARSLAKTIVTARLNKEIVTIEDL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S I K + +K N+ + FQALRI VN E+E L + L A + LK GG L+V+S+H Sbjct: 180 KSAIAKLIPRNKENK--YLAQVFQALRIEVNQEMEVLKEFLEQAAEVLKPGGRLVVMSYH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + P F +TKK + ++E++ N RSRSA+L Sbjct: 238 SLEDRLVKNFMMKGKFSGQVEKDFYGNEIKP--FTVLTKKSITASEEELLRNNRSRSARL 295 Query: 312 RAGMRTV 318 R ++ Sbjct: 296 RIAVKND 302 >gi|152992227|ref|YP_001357948.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1] gi|262825720|sp|A6Q7Y2|RSMH_SULNB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151424088|dbj|BAF71591.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1] Length = 307 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 164/301 (54%), Gaps = 6/301 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H+PVLLE+V+ + P +D T G G+S K ++ I +DRD A++ Sbjct: 1 METPHIPVLLEEVLESFSRVPEGYFVDCTLGYAGHSSEILKRYDHLKHIGIDRDDEALAF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++++ +L++ TF+ + + + V ++ D GVSS+Q+D +RGF+F Sbjct: 61 SKKRLEPFRDRSTLYKGTFATVLPTLKEAPVTALLADFGVSSLQLDKKERGFAFDSETLD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 + + +SA +VVN + L I GE + ++A A+V R AP ++ + LS Sbjct: 121 MRMDANAPLSAYEVVNTYPKEKLEYIFDTYGEVRSYKKLASAVVDARAKAPIESAKALSE 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + + +IHPAT FQA+RI VNNE+ E+ L + E G ++ +++FHSL Sbjct: 181 IAKGVIPPG--GKIHPATLMFQAIRIEVNNELGEIEGLLDAIEAKHYEGEVVSLITFHSL 238 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDRLVK F S + + H I A+ +++++K V ++E++ N RSRSAKL Sbjct: 239 EDRLVKNRFRKWSQECICDPHAIRCTCGKKHALGKALSRKPVTASKEELRVNPRSRSAKL 298 Query: 312 R 312 R Sbjct: 299 R 299 >gi|329848184|ref|ZP_08263212.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19] gi|328843247|gb|EGF92816.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19] Length = 317 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 131/311 (42%), Positives = 190/311 (61%), Gaps = 5/311 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 H+ VLL +V+ +L K+I+D TFGAGGYSR+F G+ V+A DRD + Sbjct: 3 EAAAHLSVLLPEVLTVLGNLEDKLIVDGTFGAGGYSRAFLLGGARVVAFDRDARVRPFVE 62 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++ ++F FS++ + + D +V D+GVSSMQ+D DRGFSF + GP Sbjct: 63 ALSQEFPDRFQWVNRCFSEMAEGLAELGHASCDAIVLDIGVSSMQLDEADRGFSFMRDGP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D+VN + D+ ++ + GEE ++ IA AIV+RR++ PF+ T DL+ Sbjct: 123 LDMRMSVDGRSAADIVNDDDKDDIAHVIWLYGEEHKSRSIASAIVRRREAQPFERTLDLA 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + +HPATR+FQALRI VN+E+ EL + L AE L+ G+L VV+FHS Sbjct: 183 EVVERALGGRRGAPVHPATRTFQALRIAVNDELGELERALEVAEILLRPDGVLAVVTFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK FF RSGK+ P V+ IT K V ++ ++A N RSRSAK Sbjct: 243 LEDRIVKNFFNDRSGKMAGGSRHAPQKLATRTPVYTLITPKAVQASEAEIAGNPRSRSAK 302 Query: 311 LRAGMRTVERS 321 LRA R + Sbjct: 303 LRAVRRNRAPA 313 >gi|302550804|ref|ZP_07303146.1| MraW methylase [Streptomyces viridochromogenes DSM 40736] gi|302468422|gb|EFL31515.1| MraW methylase [Streptomyces viridochromogenes DSM 40736] Length = 318 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 186/314 (59%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL PA PG V++D T G GG+S + + ++ALDRD A Sbjct: 2 SQSRHVPVMLQRCLDLLAPALEGPGPVVVDCTLGLGGHSEALLERFPEARLVALDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + Y E+ +L A + +L + + + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLAGERLAPYGERATLVHAVYDELPEVLDKLGIRRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF Sbjct: 122 AQDAPLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFS 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A +AL GG + Sbjct: 182 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVEALDVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R E Sbjct: 302 AAPARLRGAQRIRE 315 >gi|169794472|ref|YP_001712265.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii AYE] gi|184159721|ref|YP_001848060.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii ACICU] gi|215482062|ref|YP_002324244.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB307-0294] gi|239501976|ref|ZP_04661286.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB900] gi|260556905|ref|ZP_05829122.1| MraW methylase [Acinetobacter baumannii ATCC 19606] gi|332851366|ref|ZP_08433418.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150] gi|332868777|ref|ZP_08438400.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113] gi|332873764|ref|ZP_08441706.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059] gi|263433333|sp|B7GVN1|RSMH_ACIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433342|sp|B2I0K7|RSMH_ACIBC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433359|sp|B0V8N7|RSMH_ACIBY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263437330|sp|A3M9K5|RSMH_ACIBT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169147399|emb|CAM85260.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii AYE] gi|183211315|gb|ACC58713.1| predicted S-adenosylmethionine-dependent methyltransferase [Acinetobacter baumannii ACICU] gi|193078572|gb|ABO13599.2| S-adenosylmethionine methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213987451|gb|ACJ57750.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB307-0294] gi|260409511|gb|EEX02812.1| MraW methylase [Acinetobacter baumannii ATCC 19606] gi|322509634|gb|ADX05088.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii 1656-2] gi|323519652|gb|ADX94033.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii TCDC-AB0715] gi|332730082|gb|EGJ61410.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150] gi|332733206|gb|EGJ64403.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113] gi|332737987|gb|EGJ68872.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059] Length = 307 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|26988063|ref|NP_743488.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida KT2440] gi|38258006|sp|Q88N84|RSMH_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24982787|gb|AAN66952.1|AE016324_2 conserved hypothetical protein TIGR00006 [Pseudomonas putida KT2440] Length = 315 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G+ GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G+SA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F G+ + +P + I K ++ ++ N RSR Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLI-GKAQFASEAELKANPRSR 304 Query: 308 SAKLRAGMR 316 SA +R + Sbjct: 305 SAVMRVAEK 313 >gi|320334677|ref|YP_004171388.1| ribosomal RNA small subunit methyltransferase H [Deinococcus maricopensis DSM 21211] gi|319755966|gb|ADV67723.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus maricopensis DSM 21211] Length = 295 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 161/305 (52%), Gaps = 23/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H+PVL +V+ L P PG+V +D T G G++R G+ V +D+DP+A+ + Sbjct: 8 THIPVLATEVLDALQPQPGQVFVDGTLGGAGHTRLLLAAGATVYGIDQDPYALERNR--- 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + F ++ + D VDGV+ D+GVSS Q+D RGFS+ PLDM Sbjct: 65 AAGLNGLHVLEGNFRDMRALLNDAGVDHVDGVLLDIGVSSFQLDDAARGFSYHTEAPLDM 124 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G SA+D+VN DL I+ GEE+ + RIA IV R P TT L+ +I Sbjct: 125 RMSQGGDSAADLVNDMEEADLAAIIFEYGEERHSRRIARGIVNARDKGPISTTTQLADII 184 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ IHPA R+FQALRI VN+E+ L GL+ A L+ GG L V+SFHSLED Sbjct: 185 KRAYPGGHARGIHPARRTFQALRIAVNDELGALRDGLQGASDLLRPGGRLAVISFHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+F +TK+ + +++ A N R+RSAKLR Sbjct: 245 RIVKRFL-----------------LADPTLDPLTKRPIEAAEDEQARNPRARSAKLRGAR 287 Query: 316 RTVER 320 + E Sbjct: 288 KRAEE 292 >gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Boryong] gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 180/312 (57%), Gaps = 8/312 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74 H PV+ ++++ L P + LD TFG GGYS+ +IA DRDP +S Sbjct: 1 MNNIHTPVMATEMLSYLAPVDNETYLDCTFGTGGYSKLILSNCNCKIIAFDRDPAVISIA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + Y +F+ F F + Y+ ++G+V DLGVSSMQ+D +RGFSF+ L Sbjct: 61 SQFYQQYSNRFTFFNDNFVEANKYLSKSAKLNGIVMDLGVSSMQLDAANRGFSFRYDAEL 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G AS++VN+A+ L I+ GEE +A++IA IV R+ P TT L++ Sbjct: 121 DMRMSQKGYKASELVNEASEHQLADIIYKFGEENKANKIAKHIVLAREKKPITTTLQLAN 180 Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ V + K N+I AT++FQA+RIF+N+E+ + L + + L G LIVVSF Sbjct: 181 IIREAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSR 307 H+LED +VKKF + K +A + P V +TKK+ VPT+ ++ N RSR Sbjct: 241 HALEDAIVKKFMHQNAVKKVAQSKYSTNKQLPLQNGVLHLLTKKIAVPTRTEIINNPRSR 300 Query: 308 SAKLRAGMRTVE 319 SA+LRA ++ E Sbjct: 301 SARLRAALKINE 312 >gi|331016726|gb|EGH96782.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 313 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F SQ Q+ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|302185277|ref|ZP_07261950.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae 642] Length = 313 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA+ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAQFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|260063719|ref|YP_003196799.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata HTCC2501] gi|88783164|gb|EAR14337.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata HTCC2501] Length = 312 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 152/309 (49%), Gaps = 15/309 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + H PVLL + + L +D TFG GG+SR +IA D+D A++ Sbjct: 3 EMKYHKPVLLRESVDGLAIREDGTYVDVTFGGGGHSREILGRLGPKGRLIAFDQDEEALA 62 Query: 73 CG--QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E E F + Q + VDG++ D GVSS Q D +RGFS + Sbjct: 63 NKPEDERFLLIGENFRYIR----QFLKFYGILKVDGILADFGVSSHQFDRAERGFSTRFD 118 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRMS I+A DVVN + + L +L GE + A +IA +V+ R A QTT Sbjct: 119 AGLDMRMSRRAEITARDVVNTYSFEKLRSVLQRYGELRSAGKIAGELVRARDKASIQTTY 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ + + K N+ R +QA+R+ VN E+ L L+ L GG L ++S Sbjct: 179 GLNEAVSAFLPRGKENK--VLARIYQAIRMEVNQELAALEAFLQQTAALLPTGGRLSLIS 236 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+F + + + + P F+ + K++VP +++ N R+RSA Sbjct: 237 YHSLEDRLVKRFIRTGKFEGEVDKDFYGNPLAP--FRKV-GKLIVPGDDELEENPRARSA 293 Query: 310 KLRAGMRTV 318 KLR RT Sbjct: 294 KLRIAERTD 302 >gi|294793912|ref|ZP_06759049.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44] gi|294455482|gb|EFG23854.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44] Length = 311 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72 +H VLL + + + P + +D T G G++ + +I LD+D A+S Sbjct: 2 MEFNHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D K Q FS L++ + + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 62 VARQRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT Sbjct: 122 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 182 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + + K + P+ ++ N R+R Sbjct: 242 ITFHSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 301 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 302 SAKLRVAVK 310 >gi|189502287|ref|YP_001958004.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus 5a2] gi|263446692|sp|B3ESS3|RSMH_AMOA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189497728|gb|ACE06275.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus 5a2] Length = 310 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 162/314 (51%), Gaps = 9/314 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M + H PVLLE+ + L P + +D TFG GG++++ + A D+ Sbjct: 1 MEILNEPSSTYHQPVLLEESLQGLAIQPDGIYIDTTFGGGGHAKAILAQLKRGKLFAFDQ 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 D A S D F + F Q Y + +DG++ DLGVSS QID RGF Sbjct: 61 DEDAESIASTW-HDPNFTFIRANSRFIQRFLAYHQIEKIDGLIADLGVSSYQIDTALRGF 119 Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S + GPLDMRM S +AS +VN + + LT++ GE A +A A++ R P Sbjct: 120 STRSEGPLDMRMDQSSSLTASQIVNTYSFEALTQLFRTYGELHSAPALAKALIAARTKHP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TTQ L + + + FQALRI VN+E+ L L + + LK GG Sbjct: 180 IETTQSLKEIALP--FSPPRKSAKFLAQVFQALRIEVNDELGALKSLLEQSLQLLKPGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+++S+HSLEDRLVK+F + + + + M + P F + KK +VPT+E++ N Sbjct: 238 LVIISYHSLEDRLVKRFIKTGNFEGELDKDMYGNPLQP--FVPVYKKAIVPTEEELVINS 295 Query: 305 RSRSAKLRAGMRTV 318 RSRSAKLR G RT Sbjct: 296 RSRSAKLRVGERTA 309 >gi|28871551|ref|NP_794170.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato str. DC3000] gi|213966575|ref|ZP_03394726.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato T1] gi|301384710|ref|ZP_07233128.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato Max13] gi|302059802|ref|ZP_07251343.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato K40] gi|302131749|ref|ZP_07257739.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38257958|sp|Q87WX7|RSMH_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28854802|gb|AAO57865.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato str. DC3000] gi|213928425|gb|EEB61969.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato T1] Length = 313 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F SQ Q+ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|330888582|gb|EGH21243.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. mori str. 301020] Length = 313 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIPGKAQFASDTETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|315443914|ref|YP_004076793.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1] gi|315262217|gb|ADT98958.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1] Length = 353 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 175/318 (55%), Gaps = 11/318 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 S+A+ HVPVLL++ + LL P G ++DAT GAGG+S F +I L Sbjct: 34 SAAMVDDQP-HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGL 92 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 DRDP A+ E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D Sbjct: 93 DRDPDALRIAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRV 152 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ PLDMRM + ++A+ V+N + + L R+L GEEK A RIA IV+RR Sbjct: 153 ERGFSYSTDAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRR 212 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF TT +L L+ + + HPA R+FQALRI VN E+E L + +A +AL Sbjct: 213 AVTPFTTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQAL 272 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + G L V+++ SLEDR+VK FA+ + + H F ++T+ E+ Sbjct: 273 RPHGRLAVMAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEE 332 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N RS +LRA + Sbjct: 333 IERNPRSAPVRLRAVEKV 350 >gi|145223567|ref|YP_001134245.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK] gi|145216053|gb|ABP45457.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK] Length = 371 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 175/318 (55%), Gaps = 11/318 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 S+A+ HVPVLL++ + LL P G ++DAT GAGG+S F +I L Sbjct: 52 SAAMVDDQP-HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGL 110 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 DRDP A+ E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D Sbjct: 111 DRDPDALRIAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRV 170 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ PLDMRM + ++A+ V+N + + L R+L GEEK A RIA IV+RR Sbjct: 171 ERGFSYSTDAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRR 230 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF TT +L L+ + + HPA R+FQALRI VN E+E L + +A +AL Sbjct: 231 AVTPFTTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQAL 290 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + G L V+++ SLEDR+VK FA+ + + H F ++T+ E+ Sbjct: 291 RPHGRLAVMAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEE 350 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N RS +LRA + Sbjct: 351 IERNPRSAPVRLRAVEKV 368 >gi|255320234|ref|ZP_05361419.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens SK82] gi|262380450|ref|ZP_06073604.1| MraW methylase [Acinetobacter radioresistens SH164] gi|255302673|gb|EET81905.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens SK82] gi|262297896|gb|EEY85811.1| MraW methylase [Acinetobacter radioresistens SH164] Length = 303 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + +A L + +DATFG GG+SR + V A D+DP A++ Sbjct: 3 HISVLLHETVAAVLAERNTGIYVDATFGRGGHSRELLAQLNTDAQVYAFDKDPQALAVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F + A+F+ L+ + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 E-LEQQDARFKIIHASFADLKQELEKIGITEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + + L I+ GEE+ + R+A AI + TT L Sbjct: 122 LDMRMDNSQGQTAAEWLVNIEEEALANIIYQYGEERYSRRLARAIKQA---GYIATTGQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AELVKAAHPKWEKHK-HPATRTFQAIRIAINKELEDIELFLPQAVDILKPHGRLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S M + I++ + + +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESSLAEDSGWGMPQIQQDTRRLKKISR--IKASDAEVKENPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R Sbjct: 296 LRVAERLA 303 >gi|58038635|ref|YP_190599.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H] gi|68565412|sp|Q5FUK3|RSMH_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58001049|gb|AAW59943.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H] Length = 323 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 172/309 (55%), Gaps = 6/309 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67 M++ I HVPV+L +V+ L+P G LD TFG GGY+R+ + A+DRD Sbjct: 1 MNA-ITLVHSGHVPVMLHEVLEALSPRAGGRYLDGTFGGGGYARAILNAADCTLDAIDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 P A+ G + + Q TF ++ + DG+V DLGVSS QID +RGFS Sbjct: 60 PAAIERGNAMAVQANGRLRMHQGTFGDMEALAGAEGPFDGIVLDLGVSSFQIDQAERGFS 119 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ GPLDMRM G SA+D+VN +L IL GEEK + RIA AIV R AP Sbjct: 120 FRNDGPLDMRMGSDGPSAADLVNTCKEAELADILYRYGEEKLSRRIARAIVAARAEAPIT 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+ +I+ V + N I PATRSFQ LRI VN+E+ EL + L +A + L GG+ + Sbjct: 180 TTGQLAHIIRCCVPRDRAN-IDPATRSFQGLRIAVNDELGELERALEAAPRLLAPGGIFV 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VV+FHSLEDRL K+ A +G+ P F + + + T E+ N Sbjct: 239 VVTFHSLEDRLAKRAMAVLAGRTGNPSRYEPAPLRQEAPAFSLLYSRPLSATDEESRENP 298 Query: 305 RSRSAKLRA 313 R+RSA+LRA Sbjct: 299 RARSARLRA 307 >gi|73667110|ref|YP_303126.1| S-adenosyl-methyltransferase MraW [Ehrlichia canis str. Jake] gi|88909200|sp|Q3YRX7|RSMH_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72394251|gb|AAZ68528.1| methyl transferase [Ehrlichia canis str. Jake] Length = 297 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 131/304 (43%), Positives = 191/304 (62%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL++++ +L+P GK+ +DATFGAGGY+++ V A+D+D +E Sbjct: 1 MHTPVLLKEMLEILDPQDGKIYVDATFGAGGYTKAILNAANCKVCAIDQDKHTSIFYEEL 60 Query: 78 MRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + F FSQ++ + VDGVVFD+GVSSMQ+D +RGFSF K+GPLD Sbjct: 61 ANNFPNRIHFFINKFSQIKQVLLGAQLERVDGVVFDIGVSSMQLDDANRGFSFSKNGPLD 120 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRMS + I AS VN + +++ I+ G EK + +IA AI+ R+ +TT +L+S Sbjct: 121 MRMSTSNSIDASVFVNTVSEEEIANIIYQYGGEKYSRKIAKAIINFRKKKVIETTGELAS 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V SKN+ I+PATR+FQA+RI+VN E++EL QG+ A L GG +IVVSFHSL Sbjct: 181 IVRSVVSRSKNHDINPATRTFQAIRIWVNKELQELEQGIMCAADLLNPGGKIIVVSFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F S ++++ FQ I KK+V P+ E++ N RSRSAKLRA Sbjct: 241 EDRIVKMIFKSLCSDEISLKL-------NTGFQLINKKIVRPSFEEILNNPRSRSAKLRA 293 Query: 314 GMRT 317 ++ Sbjct: 294 ILKI 297 >gi|289677689|ref|ZP_06498579.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae FF5] Length = 313 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + G+ + +P P + I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|71735888|ref|YP_276238.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. phaseolicola 1448A] gi|88909210|sp|Q48EF0|RSMH_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71556441|gb|AAZ35652.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322458|gb|EFW78551.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. glycinea str. B076] gi|320330073|gb|EFW86060.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. glycinea str. race 4] gi|330875017|gb|EGH09166.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. glycinea str. race 4] Length = 313 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALEVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|254515249|ref|ZP_05127310.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3] gi|219677492|gb|EED33857.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3] Length = 308 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 166/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + + L +P + +D TFG GG+SR K + A D+D A Sbjct: 1 MAAPHETVLLHEAVDSLVSSPAGLYVDGTFGRGGHSREILKRLNDDGRLFACDKDEEAER 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +FS + +F+ L + V G++ DLGVSS Q+D +RGFSFQ Sbjct: 61 DALE-LAGEDGRFSFARGSFAALPALLAQHGLGPVHGILLDLGVSSPQLDQAERGFSFQH 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+D + A+ +++ +L GEE+ A RIA AIV+ R P T Sbjct: 120 DGPLDMRMDRSRGESAADWIASASEQEIIDVLREYGEERFARRIAGAIVRARAETPLTRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++++ + + ++ HPATR+FQA+RI VN E+++LA+ L A L GG L+V+ Sbjct: 180 SQLAAIVSEAHPRWEKHK-HPATRAFQAIRIRVNRELDDLAELLSVALSVLAVGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK+ S R++ + + K ++E+VA N RSRS Sbjct: 239 SFHSLEDRLVKRHLRDMSRGPQLPRNLPVRDVESGAQMRLLGKAQRASKEEVAGNPRSRS 298 Query: 309 AKLRAGMRTV 318 A +R + Sbjct: 299 AIMRCAEKLA 308 >gi|34540382|ref|NP_904861.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83] gi|42559440|sp|Q7MWN0|RSMH_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34396695|gb|AAQ65760.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83] Length = 311 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 9/309 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71 H+PV+L + + L P +D TFG GG+SR+ + D+D A Sbjct: 6 KESVYHIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADA- 64 Query: 72 SCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++D + F + + DY + GVDG++ DLGVSS D +RGFSF+ Sbjct: 65 --CRNILQDERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSE 122 Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PL + +G +A+ ++N+ + L+ + GE KQA R A +IV R+S Sbjct: 123 SPLLDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQ 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L S FQALRI VN+E+ L Q L +A L++GG L+V+ Sbjct: 183 TVGQLLEAVRGLISPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVM 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + K + A + +Q IT+K + + ++++ N RSRS Sbjct: 243 TYHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRS 302 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 303 AKLRIAEKI 311 >gi|299139518|ref|ZP_07032692.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8] gi|298598446|gb|EFI54610.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8] Length = 324 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 164/315 (52%), Gaps = 28/315 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 HVPVLLE+ + L PG V +DAT G GG+S + + +I DRDP A Sbjct: 14 TMERPQHVPVLLEESLKYLKVRPGGVYVDATLGLGGHSAAIARQLGGAGKLICFDRDPEA 73 Query: 71 VSCGQETMR-------DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 ++ Q + Q FS++ + V +DG++ D GVSS+Q+D R Sbjct: 74 MAKAQARLAAVAEELGPEMPQVRYVPRAFSEIDEEVEPNSLDGLLADFGVSSLQLDEAHR 133 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM +A VVNQA+ +DL ++ G + R ++ Sbjct: 134 GFSFRTDGPLDMRMDSRSELTAQQVVNQADEEDLANLIYEFG---EERRSRRIARAIVRA 190 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L+ +I K ++IHPATR+FQALRI VN+EI ++ L SAE LK G Sbjct: 191 RPIETTAELARVISAVTPSMKGDKIHPATRTFQALRIRVNDEIGQIQSLLHSAESLLKPG 250 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++++SFHSLEDR VK F + + +TKK VV +++ Sbjct: 251 GRVVLISFHSLEDRPVKDAFREGAKAG--------------RLEILTKKPVVAGEQESLR 296 Query: 303 NRRSRSAKLRAGMRT 317 N RSRSAKLRA + Sbjct: 297 NPRSRSAKLRAAEKV 311 >gi|260550822|ref|ZP_05825029.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260406132|gb|EEW99617.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 307 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAG 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + + L I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|188994484|ref|YP_001928736.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC 33277] gi|262824880|sp|B2RIE4|RSMH_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188594164|dbj|BAG33139.1| putative S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC 33277] Length = 311 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 153/309 (49%), Gaps = 9/309 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71 H+PV+L + + L P +D TFG GG+SR+ + D+D A Sbjct: 6 KESVYHIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADA- 64 Query: 72 SCGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++D + F + + DY + GVDG++ DLGVSS D +RGFSF+ Sbjct: 65 --CRNVLQDERFTFVPSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSE 122 Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PL + +G +A+ ++N+ + L+ + GE KQA R+A +IV R+S Sbjct: 123 SPLLDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRLAASIVHYRESLSGGLQ 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L S FQALRI VN+E+ L Q L +A L++GG L+V+ Sbjct: 183 TVGQLLEAVRGLISPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVM 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK F + K + A + +Q IT+K + + ++++ N RSRS Sbjct: 243 TYHSLEDRMVKNFLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRS 302 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 303 AKLRIAEKI 311 >gi|330877141|gb|EGH11290.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 313 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F SQ Q+ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|302344204|ref|YP_003808733.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075] gi|301640817|gb|ADK86139.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075] Length = 316 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H PVLL + + + P PG + +D T GAGG++ + + ++ LDRD A++ Sbjct: 1 MTAGHRPVLLAETLRAMQPKPGGIYVDGTLGAGGHAAAILEACGPTGRLLGLDRDAQALA 60 Query: 73 CGQETMRDYKE-QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + L QA+F ++ + DG++ DLGVSSMQ+D G RGFSF Sbjct: 61 LATANLAGFDQARLRLTQASFDEIGQCLSAWGVAACDGILLDLGVSSMQLDQGQRGFSFM 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG A+++V ++ LT I LGEE A R A A+++ R+ P +T Sbjct: 121 HDGPLDMRMGQSGPGAAELVADSDQNRLTAIFRDLGEEPLARRYAQAVIEARRQGPIVST 180 Query: 189 QDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+++I+ + + ++IHPATR FQALR+ VN+E+ L + L A L GG+L Sbjct: 181 GRLAAVIEASTPAAVRRKSKIHPATRVFQALRLAVNDELGRLERFLAGAPAWLNPGGVLA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR VK+ + + + +F + K + P+ +VA N R Sbjct: 241 VISYHSLEDRRVKRSLRAAANPCTCPPDLPRCVCGRRPLFDLPSHKAITPSAVEVAQNPR 300 Query: 306 SRSAKLRAGMRTVE 319 SRSA+LR +RT Sbjct: 301 SRSARLRVAVRTEA 314 >gi|225011606|ref|ZP_03702044.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-2A] gi|225004109|gb|EEG42081.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-2A] Length = 299 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 154/306 (50%), Gaps = 11/306 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PVLL+ + L+ P + +DATFG GG+SR ++ D+D A++ Sbjct: 1 MTQYHNPVLLQASLEGLHIRPNGIYVDATFGGGGHSRVILDRLGKEGRLLGFDQDVDALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + +Q Y VDG++ D GVSS Q D +RGFS + Sbjct: 61 NNIE--DSRFDFVAANFSHLTQYLKYHKIDKVDGILADFGVSSHQFDTQERGFSIRTDAR 118 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S A V+N + L + GE K + I+ IV+ R+ TT DL Sbjct: 119 LDMRMNQSQDLDAHKVINTYSEDKLRMLFFAYGELKNSKTISRTIVEAREECEIITTMDL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ V N+I + FQALRI VN+E+E L L A + L GG L+ +S+H Sbjct: 179 IELVKPLVPKRIENKI--LAQLFQALRIEVNDELEALKSFLIQANEVLVQGGRLVCISYH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK++F + S + + P + I K+++P+ ++V N R+RSAKL Sbjct: 237 SLEDRLVKRYFQTGSFDGELEKDFYGNPIKP--LKKI-GKLIIPSSDEVKENGRARSAKL 293 Query: 312 RAGMRT 317 R + Sbjct: 294 RIAEKI 299 >gi|269798180|ref|YP_003312080.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008] gi|269094809|gb|ACZ24800.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008] Length = 310 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVS 72 +H VLL + + + P + +D T G G++ + +I LD+D A+S Sbjct: 1 MEFNHTSVLLHETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALS 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + D K Q FS L++ + + VDG +FDLGVSS Q+D +RGFS+ Sbjct: 61 VARQRLSDLKCQVLTIPTNFSNLKEALRNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT Sbjct: 121 DGPLDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V Sbjct: 181 GELVRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+ K+ F S + + + K + P+ ++ N R+R Sbjct: 241 ITFHSLEDRITKQTFKELSTACICPPQLPMCVCNHKAVVKAKNKAIEPSIGEIEVNPRAR 300 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 301 SAKLRVAVK 309 >gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium BBFL7] gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium BBFL7] Length = 304 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 154/314 (49%), Gaps = 17/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H PVLLE+ I L P V +D T+G GG+SR + A D+D Sbjct: 1 MTQQSSYHSPVLLEESIDGLAINPSGVYVDVTYGGGGHSREILSRLGEDGKLFAFDQDLD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A+ E +F+L F ++ ++ VDG++ DLGVSS Q D DRGFS Sbjct: 61 ALENVIE-----DPRFTLINQNFRFMKRFLRMYGVKEVDGILADLGVSSHQFDEADRGFS 115 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + LDMRM+ A VVN DL RI GE + A R+ AI+ +RQ Sbjct: 116 TRFDARLDMRMNQESELDAVRVVNDYEEDDLNRIFKEYGELRIAPRLTRAIIAKRQEGLI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T L + V ++ + FQA+RI VN E++ L + L +++ LK GG L Sbjct: 176 ETVAQLKEICAPFVPERIQHK--MLAQVFQAIRIEVNQEMDVLEEFLIQSKEILKTGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR VK+F + + + + P F+ + K+++PT + N R Sbjct: 234 SVISYHSLEDRPVKRFMRNGLFHGEPEKDVFGRASVP--FKKV-GKLIIPTAAQIKENNR 290 Query: 306 SRSAKLRAGMRTVE 319 +RSAKLR R + Sbjct: 291 ARSAKLRIAQRIED 304 >gi|262280350|ref|ZP_06058134.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258128|gb|EEY76862.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 307 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 169/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + I LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLSETIESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ +F++ A+F+ +++ + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 ATLAQEDSRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + + L ++ GEE+ + RIA AI +TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLKIEEEQLANVIYQYGEERYSRRIAKAIKLA---GKLETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AEVVKTAHPKWEKHK-HPATRAFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S M + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R E+ Sbjct: 296 LRVAERLEEK 305 >gi|78046379|ref|YP_362554.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|88909226|sp|Q3BXF9|RSMH_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78034809|emb|CAJ22454.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 172/308 (55%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +G SA+ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|226943445|ref|YP_002798518.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ] gi|263446785|sp|C1DQ91|RSMH_AZOVD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226718372|gb|ACO77543.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ] Length = 313 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 173/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ + L+ G LD TFG GG+SR ++ D+DP AV+ G Sbjct: 7 HITVLLEEAVDALSIREGGCYLDGTFGRGGHSRLILGRLGAGGILLGFDKDPQAVAAGLA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D + + V GV+ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LATEDARFVIVQRSFAELADEMKMRGLVGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + QA+ +++ + GEE+ A R+A A+V+RRQ PF+ T DL Sbjct: 126 LDMRMDPGRGLSAAEWLAQASCEEIAHVFKDYGEERFARRMAQAVVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + +PATR+FQ LRI +NNE+ +L QGL +A + L+ GG L V+SFH Sbjct: 186 AQVLAAANPAWEKGK-NPATRAFQGLRIHINNELGDLEQGLDAALEVLEVGGRLAVISFH 244 Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + R + A + K ++ ++ N R+RSA Sbjct: 245 SLEDRIVKRFMRRQVKGEADKLPRDLPIRPAAFEPRLKLIGKPRYASESELKTNPRARSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 IMRVAEK 311 >gi|94676738|ref|YP_588954.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|263445957|sp|Q1LSW0|RSMH_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94219888|gb|ABF14047.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 317 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 178/318 (55%), Gaps = 18/318 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H+PVLL + + LN + +D TFG GG+SR ++A+DRDP Sbjct: 1 MAIDYDKHIPVLLNEAVTALNIKKDGIYIDGTFGRGGHSRLILSKLGNKGRLLAIDRDPA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ G+ + +F++ Q FS + DY+ + +DG++ DLG+SS Q+ DRGF Sbjct: 61 AIAAGRNI---HDLRFTIVQRPFSTIADYIAELNLIGCIDGILLDLGISSPQLADPDRGF 117 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ +G LDMRM GISA + + QA+V+++T +L GEE+ A RI+ AI + + Sbjct: 118 SFRHNGKLDMRMDTTCGISAREWLKQASVQEMTWVLQHFGEERFAKRISQAIFHQNRRRL 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+ LI V +S ++ HPATRSFQA+RI++NNE++E+ Q L SA L GG Sbjct: 178 ITSTSELAKLITTIVPWSNKHK-HPATRSFQAIRIYINNELKEIEQVLNSALNILAIGGK 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQE 298 L+V+SFHSLEDRLVK F S + + + + P+ + Sbjct: 237 LVVISFHSLEDRLVKYFINKHSKLPLPPTGISLTEKQIADLYKNRHLTLKNLGKIRPSIQ 296 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N R+RSA LR + Sbjct: 297 EIKVNPRARSALLRFAEK 314 >gi|299533126|ref|ZP_07046511.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44] gi|298718903|gb|EFI59875.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44] Length = 309 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 168/310 (54%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + + V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 EAARI---TDARFSIRHEGFRHLGELP-EGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S ++ + A V+ + ++ GEE+ A IA AIV RR+S T Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SFH Sbjct: 183 LAQLVAGAVKTREAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S + + R + P +++ + + P+ +V N RSRSA + Sbjct: 243 SLEDRIVKQFIAKHSKE-IYDRRAPFAPPTPMRLKALER--IKPSAAEVDANPRSRSAVM 299 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 300 RVAERTEVPA 309 >gi|325980947|ref|YP_004293349.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212] gi|325530466|gb|ADZ25187.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212] Length = 308 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 171/311 (54%), Gaps = 15/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H PVLL + L P + +DATFG GG+SR +IALDRDP AV G+ Sbjct: 1 MHTPVLLHAAVDALALKPEGIYVDATFGRGGHSRLILSGLGECGRLIALDRDPAAVLSGE 60 Query: 76 ETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++F + +FS ++ + +DGV+ DLGVSS Q++ RGFSF+ +GP Sbjct: 61 AI---TDKRFCIRHGSFSRVREILQAMEITRIDGVLLDLGVSSPQLEDTARGFSFRSAGP 117 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +AS+ ++ + +L ++ GEE+ A +IA AI+ R P TT L Sbjct: 118 LDMRMDTSGGQTASEWLSTVSESELEWVIKEYGEERFARQIARAILAARTQQPIATTLQL 177 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + ++ V ++++ HPATR+FQA+RI++N E+EELA L L+ GG L+V+SF Sbjct: 178 AGIVAAVVRARQRDSKRHPATRTFQAIRIYLNRELEELALVLPQCVDLLRPGGRLVVISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNRRS 306 HSLEDR+VK+F + + R + F T + + + +V N RS Sbjct: 238 HSLEDRMVKQFIRAAASTDNLPRGVPVREEELQRFSKQTLRPVGRAIRSNELEVTENVRS 297 Query: 307 RSAKLRAGMRT 317 RSA +R G R Sbjct: 298 RSAVMRVGERI 308 >gi|113478175|ref|YP_724236.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101] gi|123351672|sp|Q10VG1|RSMH_TRIEI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110169223|gb|ABG53763.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101] Length = 283 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 24/301 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 +H+PVL ++I+ L P + LDAT G GG+++ V+A+D+D A+ Q Sbjct: 2 NHIPVLSSELISGLVIRPRGLYLDATLGFGGHTKLILAAAPEVKVVAIDQDKQALDSSQT 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y + F+ + DG++ DLG++S+Q+D +RGFSF+ G LDMR Sbjct: 62 LLASYNSNIQFCHSNFADYD--PQNLKFDGILADLGINSVQLDTPERGFSFRHQGKLDMR 119 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ I+A+ ++N L I GEE+ + RIA I++ R TT+ + Sbjct: 120 MNQQQTITAAKIINHWEEVKLANIFYTYGEERLSRRIARKIIESRPLE--TTTELAEVVA 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 Y + RIHPATR FQALRI VN E+ L L++A LK GG + ++SFHSLED Sbjct: 178 NCVPYKYRYGRIHPATRVFQALRIEVNQELSRLETFLKNAPHWLKIGGRIGIISFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK + S + + +TKK + P +VA N R+RSAKLR Sbjct: 238 RLVKHSLRNAS-----------------ILKVLTKKPIQPQDNEVAINPRARSAKLRLAE 280 Query: 316 R 316 + Sbjct: 281 K 281 >gi|224368376|ref|YP_002602539.1| S-adenosyl-methyltransferase MraW [Desulfobacterium autotrophicum HRM2] gi|263447343|sp|C0Q8N5|RSMH_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223691092|gb|ACN14375.1| MraW [Desulfobacterium autotrophicum HRM2] Length = 312 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 162/312 (51%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 +H V+ +V L+ PG+ +D T G G++ + +I +D+D A+ Sbjct: 1 MKFEHRSVMPREVRDGLDLKPGETCVDCTLGGSGHAVTSLAAVLPNGRLIGIDQDLDAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 D S+F FS L + KGVDG++ DLG+S Q+ G RGFSF+ Sbjct: 61 NAHRVFADDMANVSIFHDNFSHLPAILDSLGIKGVDGILLDLGLSLHQLRKGQRGFSFKG 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A+D+VN + L I GEEK + +IA AIV++R SAP Sbjct: 121 DEPLDMRMDMRTALTAADLVNTLEERALVDIFFKYGEEKMSRKIARAIVRQRASAPITRN 180 Query: 189 QDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +L+ +++ + +IHPATR FQALRI VN E+E+L + L + L GG + Sbjct: 181 CELAEIVRAAIPAKIVHQQKIHPATRVFQALRISVNRELEQLERFLETFVDFLNPGGRIC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR+VK+ F + R +S+TK+ V+PT E++ N Sbjct: 241 IISFHSLEDRMVKRRFRALEQGCTCPRDFPECVCGFKPRLKSVTKRAVMPTPEEIEINPM 300 Query: 306 SRSAKLRAGMRT 317 +RSA+LR R Sbjct: 301 ARSARLRVAWRV 312 >gi|332160404|ref|YP_004296981.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664634|gb|ADZ41278.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 303 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 170/309 (55%), Gaps = 19/309 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 1 MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 57 Query: 81 YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 58 TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L+ LI Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKELADLI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 178 ANA-SPFREKHKHPATRSFQAIRIYINSELEEIERTLDGALEVLAPEGRLSVISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 R+VK F S + + A +S+ K ++P +VA N R+RS+ Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 295 LRFAERIKE 303 >gi|213158956|ref|YP_002320954.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057] gi|301345409|ref|ZP_07226150.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB056] gi|301596009|ref|ZP_07241017.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB059] gi|263433709|sp|B7IAX1|RSMH_ACIB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|213058116|gb|ACJ43018.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057] Length = 307 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A + + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTADEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|302533959|ref|ZP_07286301.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C] gi|302442854|gb|EFL14670.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C] Length = 319 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 180/314 (57%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL P PG V++D T G GG+S + +I LDRD A Sbjct: 3 SESRHVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ +L A ++ L + + + V G++FDLGVSSMQ+D DRGF++ Sbjct: 63 LRLSGERLAPFGDRATLVHAIYADLAEVLDNLGLPAVQGILFDLGVSSMQLDEADRGFAY 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF Sbjct: 123 AQDAPLDMRMDQTTGVSAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAIVREREKEPFS 182 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A + GG + Sbjct: 183 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRI 242 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 243 AVLSYHSLEDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRR 302 Query: 306 SRSAKLRAGMRTVE 319 + A+ R R E Sbjct: 303 AAPARFRGVERIRE 316 >gi|56750578|ref|YP_171279.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC 6301] gi|81299784|ref|YP_399992.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC 7942] gi|68565438|sp|Q5N4L0|RSMH_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123557084|sp|Q31PL4|RSMH_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56685537|dbj|BAD78759.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168665|gb|ABB57005.1| methyltransferase [Synechococcus elongatus PCC 7942] Length = 296 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 161/309 (52%), Gaps = 24/309 (7%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 + + HV VL +++ L P G LDAT G GG+S + VI LDRDP Sbjct: 5 SSQPSSFHHVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEWPNTQVIGLDRDPA 64 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ Q ++ Y ++ F+ Q D+ G++ DLGVSS Q+D +RGFSF++ Sbjct: 65 AIAASQTRLQLYSDRVQFQHVNFANYQ--PGDRRFQGIMADLGVSSPQLDEAERGFSFRQ 122 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A+ +VN+ + DL ++ GEE+ + RIA IV+ Q +T Sbjct: 123 DAPLDMRMDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVE--QRPFERTL 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ + RIHPATR+FQALRI VN E++ L L A L GG + ++ Sbjct: 181 ELSEAIAGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGGRIALI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR++K IT+K ++P++ ++ N RSRS Sbjct: 241 SFHSLEDRIIKHALRGDD-----------------RLTVITRKPLLPSEAEIESNPRSRS 283 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 284 AKLRIAERV 292 >gi|325829899|ref|ZP_08163357.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1] gi|325488066|gb|EGC90503.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1] Length = 318 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + D + + L + F + + + V V+FDLGVSS+QID RGFSF++ Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126 Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +GPLDMRM + ++++N DLTRI+ +EK ASRIA V+ RQ+AP +T Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 ++ L +I+ + S + HPA R+FQALRI VN E++ L GL +A + L GG L+ Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ FA + + + + +T+K V+PT E++ N R Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAQK 317 >gi|317489854|ref|ZP_07948347.1| MraW methylase [Eggerthella sp. 1_3_56FAA] gi|316911009|gb|EFV32625.1| MraW methylase [Eggerthella sp. 1_3_56FAA] Length = 318 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + D + + L + F + + + V V+FDLGVSS+QID RGFSF++ Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126 Query: 130 SGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +GPLDMRM + ++++N DLTRI+ +EK ASRIA V+ RQ+AP +T Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 ++ L +I+ + S + HPA R+FQALRI VN E++ L GL +A + L GG L+ Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ FA + + + + +T+K V+PT E++ N R Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPACMCGKQPILDIVTRKPVLPTAEEIERNAR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAQK 317 >gi|302561117|ref|ZP_07313459.1| methylase MraW [Streptomyces griseoflavus Tu4000] gi|302478735|gb|EFL41828.1| methylase MraW [Streptomyces griseoflavus Tu4000] Length = 318 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 123/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL PA PG V++D T G GG+S + + ++ALDRD A Sbjct: 2 SQSRHVPVMLQRCLDLLAPALEGPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ +L A + +L D + GV+FDLGVSSMQ+D RGF++ Sbjct: 62 LRLSGERLAPFGERATLVHAVYDELPDVLGRLGIARAQGVLFDLGVSSMQLDEAGRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF Sbjct: 122 AQDAPLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A KAL GG + Sbjct: 182 NSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALGVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPEQYQPRLKLLTRGAELPTEEEIAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R E Sbjct: 302 AAPARLRGAERIRE 315 >gi|256820422|ref|YP_003141701.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM 7271] gi|256582005|gb|ACU93140.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM 7271] Length = 304 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 157/313 (50%), Gaps = 17/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 +++ H PVLL + I LN +D TFG GG+SR K + A D+D Sbjct: 1 MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + E+F+L Q F L+ Y+ VDGV+ D GVSS Q D +RGFS Sbjct: 61 ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ +SA +VVN+ +LT I GE K A IA AI+ R+ P Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + +L ++ + K N+ + +QA+RI VN EIE L L +K G + Sbjct: 176 RLGSELQEAVKALLPKFKENK--VLAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + ++ P ++A N R Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290 Query: 306 SRSAKLRAGMRTV 318 +RSAKLR R Sbjct: 291 ARSAKLRIAERLN 303 >gi|313901510|ref|ZP_07834958.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM 13965] gi|313468223|gb|EFR63689.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM 13965] Length = 383 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 123/310 (39%), Positives = 172/310 (55%), Gaps = 15/310 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H+PVLL +V+A L P G +D T GAGG++ + + ++ +DRDP A++ Sbjct: 63 TPRHIPVLLAEVLAYLQPERGGRFVDGTVGAGGHAAAILEAAGEAGRLLGIDRDPQALAL 122 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ L F L + K VDG++ DLGVSSMQ+D RGFS+Q Sbjct: 123 AAARLAPFGDRVRLVHGDFRDLGRHLAAAGWKAVDGILLDLGVSSMQLDDPARGFSYQVD 182 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +A+D+VN A+ L R + GEE+ A RIA IV RQ P TT Sbjct: 183 APLDMRMDPSQPVTAADLVNTASRDQLARWIAEYGEERWAGRIADFIVAARQRRPITTTL 242 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ V ++ HPA R+FQALRI VNNE+E L L+ A L+ GG L+V+ Sbjct: 243 QLVEVIKDAVPARARRRGGHPARRTFQALRIAVNNELEGLEAFLQEAAGYLRPGGRLVVI 302 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK+ F + + + + A F+ +T++ V P E+ N R+RS Sbjct: 303 SFHSLEDRAVKRAFRALAAPQVGGK-------EGAAFRILTRRPVTPGDEEERRNPRARS 355 Query: 309 AKLRAGMRTV 318 AKLRA R Sbjct: 356 AKLRALERVA 365 >gi|209559798|ref|YP_002286270.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes NZ131] gi|262827234|sp|B5XML3|RSMH_STRPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209540999|gb|ACI61575.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes NZ131] Length = 316 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A +VVN DL +I GE+K + +IA I + R P + T + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ F S + + F+ +++K ++P+ ++ N+R+ SA Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHSELTANKRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVAKKI 314 >gi|326388910|ref|ZP_08210492.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326206510|gb|EGD57345.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 322 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 132/315 (41%), Positives = 189/315 (60%), Gaps = 11/315 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 H+PVL+++V+ L PG ++D TFGAGGYSR+ G+ V A DRDP A++ G Sbjct: 5 DATSPHIPVLIDEVLVALGAGPGMTMVDGTFGAGGYSRALVAAGARVHAFDRDPDAIAAG 64 Query: 75 QETMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + Q L FS+L + + + + VDGVVFD+GVSSMQ+D +RGF+F Sbjct: 65 RLLAECAGEDPQLVLHHRRFSELAEGLAEAGVEQVDGVVFDIGVSSMQLDQANRGFAFSS 124 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ G SA+D +N A+ + +L I GEE+Q+ RIA AIV R P TT+ Sbjct: 125 DGPLDMRMAQEGPSAADFLNTADEAAIADVLYIYGEERQSRRIARAIVAAR---PLTTTR 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + +++K + + PATRSFQA+RI VN E++EL GL +AE+ L GG L VV+ Sbjct: 182 QFAEVVRKALGYRPGAPKDPATRSFQAVRIHVNGELDELTAGLAAAERVLAPGGRLAVVT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+F +G V A +P + VF+ + + P +E++A N R+R Sbjct: 242 FHSLEDRIVKQFLREAAGLVPAGSRHLPVLASTARPVFEKPSS-PIRPGEEELARNPRAR 300 Query: 308 SAKLRAGMRTVERSI 322 SA LR +R+ + Sbjct: 301 SATLRWAVRSDAPAR 315 >gi|332829620|gb|EGK02266.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas gadei ATCC BAA-286] Length = 300 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 167/307 (54%), Gaps = 16/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+P LL + + +N G + +D TFG GG+S+ ++ A D+D A++ Q Sbjct: 2 YHIPALLHESVDGMNIRTGSICVDVTFGGGGHSKEILSHLGNKGHLYAFDQDEDAINNIQ 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131 E +F+ ++ F L++++ VD ++ DLGVSS D DRGFSF+ Sbjct: 62 E-----DSKFTFIRSNFRFLKNFIKYHGVEEVDAILADLGVSSHHFDAEDRGFSFRFEDS 116 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+ ++N + L I + GE K + RIA AIVK R+ P++ D Sbjct: 117 DLDMRMNQKAGKTAAQILNTYTEEQLADIFYLYGELKPSRRIASAIVKTRKEKPYRKVSD 176 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L + V + + A ++FQALRI VN E+E L + L A LK GG L+V+++ Sbjct: 177 LLDTLNSFVGRGEKEKKVLA-QAFQALRIEVNEEMETLKEMLEQALDILKPGGRLVVITY 235 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK FF + + + + + P F+ I KV+VP++E+ N RSRSAK Sbjct: 236 HSLEDRLVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVIVPSREEEERNPRSRSAK 293 Query: 311 LRAGMRT 317 LR + Sbjct: 294 LRIAEKI 300 >gi|53803411|ref|YP_114850.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str. Bath] gi|115311584|sp|Q604V0|RSMH_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53757172|gb|AAU91463.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str. Bath] Length = 301 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L +V+ +L P + +D TFG GG+SR+ + ++A+DRD AV+ T Sbjct: 1 MLSEVLEMLAVRPDGIYVDCTFGRGGHSRAILERLGPEGRLLAIDRDLEAVAAAGATGLS 60 Query: 81 YKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS + +V VDG++ DLGVSS Q+D RGFSF ++GPLDMR Sbjct: 61 ADARFGIEHGRFSDVGRFVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMR 120 Query: 137 MSCSGISA-SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + + ++ + + + ++L R+L GEE+ A RIA A+V+ R+ P TT DL LI Sbjct: 121 MDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRRPIVTTTDLVRLI 180 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + K+ HPATR+FQA+RI VN+E+ +L QGL A + L AGG L+V+SFHSLED Sbjct: 181 EAAI-PFKDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLAAGGRLVVISFHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+F + + + + P + ++ K + +++ N R+RSA LRA Sbjct: 240 RIVKRFMRDEARGREMAGGIFETRSCPRL--AVLGKPLKAGDDEIRINPRARSALLRAAE 297 Query: 316 RTVE 319 + Sbjct: 298 KRAA 301 >gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW [Herminiimonas arsenicoxydans] gi|263456141|sp|A4G8U6|RSMH_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|133739882|emb|CAL62933.1| S-adenosyl-dependent methyl transferase MraW [Herminiimonas arsenicoxydans] Length = 321 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 160/306 (52%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 H VLLE+ + L + +D TFG GG+SR + ++A D+D A++ Sbjct: 11 HRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIAN 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 AT S V+GV+ DLG+SS Q+D RGFSF+ GPL Sbjct: 71 AATIEDKRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRADGPL 130 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM GISA++ + + + +++ GEE+ A +IA AIV R P +T+ L+ Sbjct: 131 DMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTRQLA 190 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + PATR+FQA+RIF+N E+EEL L A + L G L+V+SFHS Sbjct: 191 EIVARAVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVISFHS 249 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+F AS++ R + + + I + + P+ +++ N R+RSA Sbjct: 250 LEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIAR--IKPSAAEISANPRARSAV 307 Query: 311 LRAGMR 316 +R R Sbjct: 308 MRVAER 313 >gi|285019581|ref|YP_003377292.1| S-adenosyl-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474799|emb|CBA17298.1| putative s-adenosyl-methyltransferase protein [Xanthomonas albilineans] Length = 333 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 172/311 (55%), Gaps = 7/311 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 A+ + HVPVL +V+ L + LD TFG GG++R G ++ +D+DP Sbjct: 11 AVSYPSAAHVPVLFAQVMDGLQVIENGIYLDGTFGRGGHARGVLHKLGPGGRLLVMDKDP 70 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ E + S+ + +F+ L + +DGV+FDLGVSS Q+D +RGFSF Sbjct: 71 EAIAEA-EHAFGGDARVSIRRGSFADLGHWDAATALDGVLFDLGVSSPQLDVAERGFSFG 129 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM G SA+ + +A+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 130 KDGPLDMRMDPHAGESAAQWLARADEREIADVLWHYGEERQSRRIARAIVARRAEQPLTR 189 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI TV +++ HPATRSFQA+RI N E+ +L GL +A LK GG L V Sbjct: 190 TAQLAELI-ATVMPRGDSKTHPATRSFQAIRIHTNRELADLESGLDAALARLKPGGRLAV 248 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK F + + R + + + + + E++A N R+R Sbjct: 249 ISFHSLEDRIVKHFMQRHAKAPPSNRRLPEAQTFVPALR-LHGGAIKADAEELAGNPRAR 307 Query: 308 SAKLRAGMRTV 318 SA LR + Sbjct: 308 SAVLRVAEKLA 318 >gi|264680254|ref|YP_003280164.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2] gi|262210770|gb|ACY34868.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2] Length = 309 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 168/310 (54%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + + V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 EAARI---TDARFSIRHEGFRHLGELP-EGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S ++ + A V+ + ++ GEE+ A IA AIV RR+S T Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SFH Sbjct: 183 LAQLVAGAVKTREAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P+ +V N RSRSA + Sbjct: 243 SLEDRIVKQFIAKHSKEV-YDRRAPFAPPAPMRLKALER--IKPSAAEVDANPRSRSAVM 299 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 300 RVAERTEVPA 309 >gi|218961102|ref|YP_001740877.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas acidaminovorans] gi|167729759|emb|CAO80671.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas acidaminovorans] Length = 327 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 178/323 (55%), Gaps = 10/323 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 + H PV++++ ++ LN G + +DAT G GG+S + K + D+D A+ Sbjct: 1 MTFHTPVMVKECLSYLNLRAGYIYVDATTGGGGHSLAMLKAQPEIKLYCFDQDSEAIEEA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +Y L QA F QL+ Y KG+DG++FDLGVSS Q++C +RGFSF+K Sbjct: 61 GKILHNYNN-VELIQANFKQLRTELAYRKIKGIDGILFDLGVSSHQLECTERGFSFEKDA 119 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + SA + VN+ + K LT I GEE+ A RIA AI K + P +TT++ Sbjct: 120 PLDMRMDKNLKNSAYNAVNELDTKTLTNIFREYGEEQNAYRIAKAIEKSSK--PIKTTRE 177 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + R FQALRI+VN E+E L+ L+ A L G ++V+S+ Sbjct: 178 LAKIVESIAGKGTKASLKTKVRVFQALRIYVNKELESLSLALQDAINLLNPQGRIVVISY 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F K + SN H +TKK V T+E++ N RSRSA Sbjct: 238 HSLEDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQQLIILTKKPVTATEEEILVNPRSRSA 297 Query: 310 KLRAGMRTVERSIEDDSFVHLPR 332 KLRAG + E + R Sbjct: 298 KLRAGEKVQREKRETKTSRKPNR 320 >gi|315223498|ref|ZP_07865354.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287] gi|314946533|gb|EFS98525.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287] Length = 304 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 156/313 (49%), Gaps = 17/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 +++ H PVLL + I LN +D TFG GG+SR K + A D+D Sbjct: 1 MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + E+F+L Q F L+ Y+ VDGV+ D GVSS Q D RGFS Sbjct: 61 ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAQRGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ +SA +VVN+ +LT I GE K A IA AI+ R+ P Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + +L ++ + K N+ + +QA+RI VN EIE L L +K G + Sbjct: 176 RLGSELQEAVKTLLPKFKENK--VLAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + ++ P ++A N R Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290 Query: 306 SRSAKLRAGMRTV 318 +RSAKLR R Sbjct: 291 ARSAKLRIAERLN 303 >gi|15806866|ref|NP_295589.1| S-adenosyl-methyltransferase MraW [Deinococcus radiodurans R1] gi|20139273|sp|Q9RT99|RSMH_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|6459646|gb|AAF11419.1|AE002026_7 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 312 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 168/312 (53%), Gaps = 18/312 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 S HVPVL +++ L PAPGKV +D T G G++R G+ V +D+DP+ Sbjct: 17 ESEASPPTFSHVPVLATEIVEALAPAPGKVFVDGTLGGAGHTRLLLGRGATVYGIDQDPY 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ ++ ++L VDG++ D+GVSS Q+D RGFS+ Sbjct: 77 ALDRARQAALPGLHVLQGNYRDMAELLPAAGVTQVDGILLDIGVSSFQLDDAGRGFSYHT 136 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRMS SG SA+DVVN + +L ++ GEE+ + RIA IV+ R+ AP +TT Sbjct: 137 EAPLDMRMSQSGESAADVVNDLDETELAALIYEYGEERHSRRIARFIVQAREKAPIETTV 196 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I++ + IHPA R+FQALRI+VN+E+ L GL +AE L GG L V+S Sbjct: 197 QLAEIIKRAYPGF-SKGIHPARRTFQALRIYVNDELGALRDGLSAAEGLLAPGGRLAVIS 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+F V +TK+ +V + + N R+RSA Sbjct: 256 FHSLEDRIVKRFLLGSD-----------------VLTPLTKRPIVAAESEQVDNPRARSA 298 Query: 310 KLRAGMRTVERS 321 KLR G R Sbjct: 299 KLRVGERAAAPE 310 >gi|322436313|ref|YP_004218525.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9] gi|321164040|gb|ADW69745.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9] Length = 297 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 166/313 (53%), Gaps = 28/313 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T HVPVLLE+ + LN PG V +DAT G GG+S + K +IA DRDP A+S Sbjct: 2 TPQQHVPVLLEEALEYLNVRPGGVYVDATLGLGGHSSAIAKKLGGQGKLIAFDRDPDAMS 61 Query: 73 CGQETMRDYKEQ-------FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 Q + KE+ FS+ D + +DG++ D GVSSMQ+D RGF Sbjct: 62 KAQARLEALKEELGAEMPTVQFEPRAFSEAGDAIAKGSLDGLLADFGVSSMQLDEAHRGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM G +A VVN+ + +L ++ G + R ++ P Sbjct: 122 SFRSDGPLDMRMDTRSGETAGQVVNEEDENELADLIYEFG---EERRSRRIARAIVRARP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ +I K ++IHPATR+FQA+R+ VN+E+ E+ L+SA LK GG Sbjct: 179 ISTTAELARIISAAAPPMKGDKIHPATRTFQAIRMRVNDELGEIQSLLKSAGSLLKPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+++SFHSLEDRLVK F F +TKK V+ +++ N Sbjct: 239 LVMISFHSLEDRLVKDAFREL--------------GRDKKFTVLTKKPVIAAEQESLRNP 284 Query: 305 RSRSAKLRAGMRT 317 RSRSAKLRA + Sbjct: 285 RSRSAKLRALEKV 297 >gi|95930740|ref|ZP_01313473.1| methyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95133220|gb|EAT14886.1| methyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 318 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 179/313 (57%), Gaps = 9/313 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H VL + + LL+ G +LD T G G+SR + +I LDRD Sbjct: 1 MADNDFVHQSVLPTETLELLDLHAGDTVLDGTLGGAGHSRLILEATAPNGVLIGLDRDHD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ G E + Y ++ L A F+ V + G++G++ DLGVSS Q+D +RGFS Sbjct: 61 ALANGAEVLAAYGDRVILRHANFADANQVVEELGLDGLNGMLLDLGVSSYQLDQAERGFS 120 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM G +A+DVVN A V++LT I GEE+ A RIA I + RQ P Sbjct: 121 FRADAPLDMRMDQQGDETAADVVNTATVEELTLIFKKYGEERWAGRIARRIERIRQQTPI 180 Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ L+++TV + RIHPATR FQALRI VN+E++ +A+G+ LK GG+ Sbjct: 181 TTTFQLAELVKETVPGGRVPARIHPATRVFQALRIRVNDELDSVAKGVEQGIGLLKPGGV 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+SFHSLEDR+VK F R+ + + + A + +T++ V ++ ++A N Sbjct: 241 LAVISFHSLEDRIVKNIFRHRASPCVCPPRLPMCACGKKADVEVLTRRGVRASETEIAEN 300 Query: 304 RRSRSAKLRAGMR 316 RSRSA LRA R Sbjct: 301 PRSRSAVLRAVRR 313 >gi|312795053|ref|YP_004027975.1| S-adenosyl-methyltransferase mraW [Burkholderia rhizoxinica HKI 454] gi|312166828|emb|CBW73831.1| S-adenosyl-methyltransferase mraW (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 317 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 168/319 (52%), Gaps = 14/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+SA+ G H VLL++ + L + +D TFG GG+SR+ + +IA D Sbjct: 1 MASAMEKP-GQHRTVLLDEAVDALITRADGIYVDGTFGRGGHSRAVLARLAPAARLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A+ + A + V GV+ DLGVSS QID RGF Sbjct: 60 KDPQAIEVARGIADPRLNVVHGSFAQLRDVLAARGGVRVSGVLLDLGVSSPQIDDPARGF 119 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 SF+ GPLDMRM G SA+ + + ++L ++ GEE+ A +IA AIV RR + Sbjct: 120 SFRHDGPLDMRMDPTRGESAAQWLAHVDERELIEVIRDYGEERFAVQIAKAIVARRAESG 179 Query: 184 ---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P T++L+ ++ + V + PATR+FQA+RI +N E+ EL L +A ++L+ Sbjct: 180 RLGPIVRTRELAEIVARAVKT-REKGQDPATRTFQAIRIHINQELAELPVVLETALESLE 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQE 298 GG L+V+SFHSLEDR+VK+FF S + R + ++ + + + V + Sbjct: 239 QGGRLVVISFHSLEDRIVKRFFQSHARAPAVDRRLPIRAADLPSPPLRILGR--VFAGEA 296 Query: 299 DVAFNRRSRSAKLRAGMRT 317 +VA N R+RSA +R R Sbjct: 297 EVAANPRARSAVMRIAERV 315 >gi|299768536|ref|YP_003730562.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1] gi|298698624|gb|ADI89189.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1] Length = 307 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + + L I+ GEE+ + RIA AI TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKNA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S M + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R E+ Sbjct: 296 LRVAERLEEK 305 >gi|238918670|ref|YP_002932184.1| S-adenosyl-methyltransferase MraW, [Edwardsiella ictaluri 93-146] gi|263447473|sp|C5B9E8|RSMH_EDWI9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238868238|gb|ACR67949.1| S-adenosyl-methyltransferase MraW, putative [Edwardsiella ictaluri 93-146] Length = 313 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 173/317 (54%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL++ +A LN + +D TFG GG+SR +IA+DRDP Sbjct: 2 SENFQHKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDP--- 58 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + +FS+ FS L DYV + +DG++ DLGVSS Q+D +RGFSF Sbjct: 59 QAIAAAAQIDDPRFSIIHGPFSALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G+SA+ + QA D+ +L GEE+ A RIA AIV+R ++ P Sbjct: 119 MRDGPLDMRMDPSRGLSAAQWLMQAEEDDIAWVLKTFGEERFAKRIARAIVERNRTEPLS 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L++LI K HPATRSFQA+RI++N+E++E+ + L A AL G L Sbjct: 179 RTRELAALISDA-SPFKEKHKHPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F S + + + A +++ K+ +P + +V Sbjct: 238 VISFHSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVV 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR R Sbjct: 296 DNPRARSSVLRVAERIA 312 >gi|307710487|ref|ZP_07646924.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564] gi|307618750|gb|EFN97889.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564] Length = 299 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 157/296 (53%), Gaps = 10/296 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY--KEQFS 86 L+ P + +DAT G G+S ++ A D+D A+ Q+ + Y K + Sbjct: 2 LDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMVT 61 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GI 142 + F LQ + + + +DG+ +DLGVSS Q+D +RGFS++K PLDMRM+ + Sbjct: 62 FIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDASL 121 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A +VVN + DL RI GE+K + +IA I + R P +TT +L+ +I+ Sbjct: 122 TAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARDLKPIETTTELAEIIKSAKPAK 181 Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTKQL 241 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F S + + + +++K ++P+ E++ N RS SAKLR + Sbjct: 242 FKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSAKLRVARKI 297 >gi|262377037|ref|ZP_06070263.1| MraW methylase [Acinetobacter lwoffii SH145] gi|262308075|gb|EEY89212.1| MraW methylase [Acinetobacter lwoffii SH145] Length = 303 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 162/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + I L +D TFG GG++R + V A D+DP A++ Sbjct: 3 HISVLLHETIDALLAGRNTGTYVDGTFGRGGHTRLLLSKLDENARVYAFDKDPQALAVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F + A+F+ L+D + + + VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 63 E-LEQEDSRFKIIHASFADLKDALAELGIEHVDGVMADLGVSSPQLDQAERGFSFMKDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + Q + L I+ GEE+ + RIA AI TT L Sbjct: 122 LDMRMDNSQGPTAAEWLTQIEEEALANIIFKYGEERYSRRIAKAIKAA---GYIDTTAKL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + N+ H ATR+FQA+RI +N E+E++ L A + LK L V+SFH Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEIFLPQAVEILKPEARLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + +++ V + E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLEEDSGWGMPQQQKDTRRLKKVSR--VKASDEEVKANPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R Sbjct: 296 LRVAERLA 303 >gi|313896117|ref|ZP_07829671.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137 str. F0430] gi|312975542|gb|EFR41003.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137 str. F0430] Length = 310 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 152/306 (49%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HV VL + +A L P +D T G G++ +I +D+D A++ Q Sbjct: 5 HVSVLPAETVAALAVVPEGTYVDCTLGGAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + SL F L + + VDG++FDLGVSS QID RGFS+ + PL Sbjct: 65 RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA VVN+ + LT I GEE+ A RIA I R+ P +TT +L Sbjct: 125 DMRMDRRAVRSAHTVVNEYSAARLTEIFYTYGEERWAKRIAAFIEAARKERPIETTGELV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + V + HPA R FQA+RI VN E+ L+ + +A ALK GG L V++FH Sbjct: 185 EIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILSDAVTAAVHALKPGGRLAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ + + H H + I K + + A N R++SAK Sbjct: 245 SLEDRIVKRTMQQLARGCICPPHTPACICGHTPELRLI-GKAQTASLAECAVNARAKSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRVAEK 309 >gi|119897167|ref|YP_932380.1| S-adenosyl-methyltransferase MraW [Azoarcus sp. BH72] gi|263446774|sp|A1K3T8|RSMH_AZOSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119669580|emb|CAL93493.1| SAM dependent methyltransferase [Azoarcus sp. BH72] Length = 312 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 167/313 (53%), Gaps = 11/313 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 MS+ + HV VLL + + L P + +D TFG GG+SR+ G +IA D Sbjct: 1 MSAQLQ-----HVSVLLTEAVDALAIKPEGIYVDGTFGRGGHSRAVLARLGAGGRLIAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RDP A++ GQ E + F+ + D + VDGV+ DLGVSS Q+D RG Sbjct: 56 RDPAAIAAGQAIADPRLELVHAPFSEFAVVLDRLGVSAVDGVLLDLGVSSPQLDDASRGM 115 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM G + ++ + +A+V ++T ++ GEE+ A IA AI R Sbjct: 116 SFRFDAPLDMRMDTSRGRTVAEWLAEASVAEITEVIRDYGEERFAYAIAKAIAAARTGGA 175 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+++++K V + + HPATRSFQALRIF+N E+EEL L L GG Sbjct: 176 IATTGQLAAIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELTTVLPDCVARLSEGGR 234 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFN 303 L+V+SFHSLEDR+VK+F + + A + + K P + +VA N Sbjct: 235 LVVISFHSLEDRIVKRFLRDEARPPQLPSRLPVRAADLPPPRLQLVGKAQRPGEAEVAAN 294 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 295 PRARSAVMRVAER 307 >gi|323341698|ref|ZP_08081931.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464123|gb|EFY09316.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Erysipelothrix rhusiopathiae ATCC 19414] Length = 303 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 169/306 (55%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H+ V+L + I LLN P + +DAT GAGG+S CK +I D+D A+ + Sbjct: 2 KHISVMLNETIELLNINPEGIYVDATLGAGGHSYEICKQLTTGRLIGFDKDLDAIERTSK 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ ++ +++QL + + + VDGV+FDLGVSS Q D +RGFS++ L Sbjct: 62 RLEVFGDKVTMVHGSYTQLTEKLNELGIDEVDGVLFDLGVSSPQFDDAERGFSYRFDSRL 121 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + SA +VVN+ + L +IL +E+ A RI I ++ P +TT +L Sbjct: 122 DMRMDQTQALSAYEVVNEYEEEHLVQILKDNSDERYARRIVKNI---IENRPVETTFELV 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+++ + HPA ++FQALRI VNNE EE+ + A +K GG ++V++FHS Sbjct: 179 ELIKRSYPGKDLKKGHPAKKTFQALRIEVNNEFEEVKDAVEQAVHVIKPGGRVVVITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK+ F++ + ++ ++ K + + E++ FN R+ SA LR Sbjct: 239 IEDRIVKRIFSNYGKPKKVDPRLPIIEEQVLNYKLVS-KALKASTEELEFNNRAHSAILR 297 Query: 313 AGMRTV 318 R Sbjct: 298 GIERVK 303 >gi|291440170|ref|ZP_06579560.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343065|gb|EFE70021.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 318 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 123/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL P PG V++D T G GG+S + + ++ALDRD A Sbjct: 2 SQSRHVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSGERLAPFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF Sbjct: 122 AQDAPLDMRMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A KAL G + Sbjct: 182 RSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R E Sbjct: 302 AAPARLRGAQRIRE 315 >gi|255326220|ref|ZP_05367306.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296] gi|255296674|gb|EET76005.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296] Length = 354 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 115/321 (35%), Positives = 175/321 (54%), Gaps = 15/321 (4%) Query: 16 TIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALD 65 HVPV+L++ I LL P ++D T G GG+S + + N+ I +D Sbjct: 33 ASERHVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGID 92 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 RD A + E + + ++F A + ++ + +G+DG++ DLGVSSMQ+D Sbjct: 93 RDLQAHAIAGERLARFGDRFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERT 152 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ PLDMRM+ +A VVN+ + L RI+ GEEK ASRIA AI R Sbjct: 153 RGFAYSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARA 212 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +AP +TT +L +IQK V + + HPA R+FQALRI VN+E+E L + + +A +AL Sbjct: 213 NAPLETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALN 272 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + +S+HSLED++VK+ + + + H + IT+ PT E++ Sbjct: 273 LGGRFVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEI 332 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N R+ SAKLRA + + Sbjct: 333 EQNSRAASAKLRAAEKIRIPA 353 >gi|120404503|ref|YP_954332.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1] gi|119957321|gb|ABM14326.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1] Length = 378 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 175/325 (53%), Gaps = 18/325 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS-- 59 S+A+ H+PVLL++ + LL PA G ++DAT GAGG+S F Sbjct: 52 SAAMVDDEP-HIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPAL 110 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114 +I LDRDP A+ + + + ++ +L + + + V + D ++FDLGVS Sbjct: 111 RLIGLDRDPDALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVS 170 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D +RGF++ PLDMRM +A+ V+N + K L R+L + GEEK A RIA Sbjct: 171 SMQLDRVERGFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIA 230 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGL 232 IV+RR + PF TT +L L+ + + + HPA R+FQALRI VN E+E L + Sbjct: 231 AQIVRRRANTPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAI 290 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 +A + L+ G + V+++ SLEDR+VK FA+ + + H F ++T+ Sbjct: 291 PAALEVLRPHGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGA 350 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 E++ N RS S +LRA + Sbjct: 351 ERADAEEIERNPRSASVRLRALEKV 375 >gi|237799282|ref|ZP_04587743.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022138|gb|EGI02195.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 313 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 170/308 (55%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSEALERDLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTAD 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 185 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMEALEVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ I K + + N RSRS Sbjct: 244 HSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDTETKANPRSRS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AVMRVAEK 311 >gi|293610699|ref|ZP_06692999.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827043|gb|EFF85408.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 307 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + + L I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S + +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDIGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|309812627|ref|ZP_07706371.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185] gi|308433322|gb|EFP57210.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185] Length = 323 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 9/320 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63 M + HVPV+L +++ L P G + +DAT G GG++ + + I Sbjct: 1 MEMSRGLAADRHVPVMLTEILDALAPSLERSGALYVDATLGMGGHTEAVLERFGEARAIG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 +DRD A+ E + + ++F A +++ D +P + D ++FDLGVSS+Q+D DR Sbjct: 61 IDRDTEALRLAGERLARFGDRFEGVHAVNTEVADVLP-RPADAMLFDLGVSSLQLDELDR 119 Query: 124 GFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 GFS++ PLDMRM G +A+DV+N A+ +L RIL GEE+ A +IAHA+VK R+ Sbjct: 120 GFSYRADAPLDMRMDQTSDGPTAADVLNTASQDELERILKTYGEERFARKIAHAVVKERE 179 Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P+ T+ L +++ + S+ HPA R+FQALRI VN+E+ Q + SA +L Sbjct: 180 KQPWTTSGRLVEMLRSVIPLASQRQSGHPAKRTFQALRIEVNDELRGWEQAVTSALDSLA 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V+SFHSLEDR+ K+ FA+ S + H F +T+ VP+++++ Sbjct: 240 VGGRLAVLSFHSLEDRITKRAFATASASTAPPGLPVELPQHRPEFALVTRGAAVPSEDEL 299 Query: 301 AFNRRSRSAKLRAGMRTVER 320 N RS S +LR RT + Sbjct: 300 ESNPRSASVRLRVIERTRAK 319 >gi|220927929|ref|YP_002504838.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10] gi|263447445|sp|B8I6G6|RSMH_CLOCE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219998257|gb|ACL74858.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10] Length = 313 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 161/313 (51%), Gaps = 11/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 H VLL++ I LN + +D T G G+S K ++ LD+D FAV Sbjct: 1 MEFKHTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLGEKGCLVGLDQDSFAVE 60 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + K F + F ++ VDG++ DLGVSS Q+D RGFS+ Sbjct: 61 TSIKRLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILLDLGVSSHQLDEASRGFSY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM+ SA DVVN+ + +D+ RI+ GEEK ASRIA I + RQ+ P + Sbjct: 121 QHDAPLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEEKWASRIAKFITEARQNEPVE 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT DL +I+K V S + + HPA R+FQA+RI VNNE+ L + + LK GG L Sbjct: 181 TTYDLVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK + + I KK +V ++ N Sbjct: 241 CIITFHSLEDRIVKMQYNKMVNPCTCPPAFPVCACGKKPKAVLINKKPIVSDIRELDKNP 300 Query: 305 RSRSAKLRAGMRT 317 R+RSAKLR + Sbjct: 301 RARSAKLRVLQKI 313 >gi|83319603|ref|YP_424368.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535772|sp|Q2SS95|RSMH_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83283489|gb|ABC01421.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 309 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 155/310 (50%), Gaps = 12/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H+PVLL++ I LN + +D T G G++ K S + A+D+D A+ Sbjct: 1 MDKHIPVLLDESIKYLNIKLNGIYVDCTLGRAGHASEILKRLSQNGFLYAIDQDKTAIGQ 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + F L Q FS L VDG+++DLGVSS Q+D G RGFS++ Sbjct: 61 AKEKLEKISNNFFLIQGNFSNLSALLAINHIFSVDGILYDLGVSSPQLDIGSRGFSYRID 120 Query: 131 GPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + +A ++NQ + + IL GEE A IA IV T Sbjct: 121 GPLDMRMDITNNNLTADTIINQYSETQIEDILFKYGEESFAKSIAKKIV--LSRPINSTL 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 Q + + + HPA ++FQALRIF+NNE+ L L+ A L + G + V+ Sbjct: 179 QLVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALDLLNSKGRICVI 238 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLE+++VK F S + + ++ + F+ + KK + P+ ++ N RS Sbjct: 239 TFHSLEEKIVKNIFNSSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNHRS 298 Query: 307 RSAKLRAGMR 316 SAKL + Sbjct: 299 HSAKLWVIEK 308 >gi|190571322|ref|YP_001975680.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018718|ref|ZP_03334526.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226709924|sp|B3CMB5|RSMH_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190357594|emb|CAQ55035.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995669|gb|EEB56309.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 294 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 117/303 (38%), Positives = 177/303 (58%), Gaps = 17/303 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H+PVLL++++ L+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 2 THIPVLLKEMLLQLSPHSGGIYVDATFGAGGYSKAILESADCKVYAVDRDETVTKFYDDL 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y + LF FS +++ + ++G+VFD+GVSSMQ+D GDRGFSF + GPL+ Sbjct: 62 NVKYPNRIKLFIEKFSNIKNLLDSNNIKGINGIVFDVGVSSMQLDNGDRGFSFLRDGPLN 121 Query: 135 MRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 M M AS VN +++ + G E+ + RIA AIV R+ +TT +L+ Sbjct: 122 MSMDNYSHMNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARKKKIIKTTFELAD 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L G LIVV+FHSL Sbjct: 182 IVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F + F + KKV+ + E++ N R+RSAKLRA Sbjct: 241 EDRIVKTVFKD-----------LCEPGSTKTFSLLNKKVIKASSEEINVNPRARSAKLRA 289 Query: 314 GMR 316 R Sbjct: 290 IQR 292 >gi|170016882|ref|YP_001727801.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20] gi|263456317|sp|B1MXV5|RSMH_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169803739|gb|ACA82357.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20] Length = 313 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 160/308 (51%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + +ALL P +DAT G GG++ K + + D+D A+ Q Sbjct: 5 EHVTVLLHEAVALLAINPTGTYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIKYNQT 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + L F QL+ + ++ VDG+V+DLGVSS+Q D G RGFS+ Sbjct: 65 RYADEIAAGKLILIHQNFRQLKVALAEQHVTAVDGIVYDLGVSSVQFDDGQRGFSYNYDA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +A +VN D+ R+L GE++ ++A I + R P TT + Sbjct: 125 ELDMRMDQRQTLTAKTIVNDWPFNDILRVLSRYGEDRFPKQVARKIEQHRDKGPINTTFE 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALR+ VN+E+ L L A + L G + V++ Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQALELLAPSGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F ++ + ++ +T+K ++P++ ++ N RS S Sbjct: 245 FQSLEDRLVKQMFREKTSMPDLPAGLPVLPGQFEPDYKLLTRKPILPSETEMTDNHRSES 304 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 305 AKLRGIER 312 >gi|283458388|ref|YP_003363012.1| putative S-adenosylmethionine-dependent methyltransferase [Rothia mucilaginosa DY-18] gi|283134427|dbj|BAI65192.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Rothia mucilaginosa DY-18] Length = 354 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 175/321 (54%), Gaps = 15/321 (4%) Query: 16 TIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALD 65 HVPV+L++ I LL P ++D T G GG+S + + N+ I +D Sbjct: 33 ASERHVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGID 92 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 RD A + E + + E+F A + ++ + +G+DG++ DLGVSSMQ+D Sbjct: 93 RDLQAHAIAGERLARFGERFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERT 152 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ PLDMRM+ +A VVN+ + L RI+ GEEK ASRIA AI R Sbjct: 153 RGFAYSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARA 212 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +AP +TT +L +IQK V + + HPA R+FQALRI VN+E+E L + + +A +AL Sbjct: 213 NAPLETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALN 272 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + +S+HSLED++VK+ + + + H + IT+ PT E++ Sbjct: 273 LGGRFVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEI 332 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N R+ SAKLRA + + Sbjct: 333 EQNSRAASAKLRAAEKIRIPA 353 >gi|114321350|ref|YP_743033.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii MLHE-1] gi|123127253|sp|Q0A6J4|RSMH_ALHEH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114227744|gb|ABI57543.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii MLHE-1] Length = 317 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 157/306 (51%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG++ + +DRDP A++ + Sbjct: 11 HRPVLLDEALDALAIRPHGVYVDGTFGRGGHAAGILARLGPEGRLWLVDRDPEAIAVARA 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + ++ F +L + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 71 RHGD-DPRCTIAHGRFDELPGRLEAAGLLHRVDGLLLDLGVSSPQLDSAERGFSFMREGP 129 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQD 190 LDMRM G++A + + Q + K L+R L GEE+ + RIA A I R A +TT Sbjct: 130 LDMRMDTSRGVTAREWLEQVDEKTLSRALRDYGEERHSRRIARALIRAREDGALPETTGA 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + V HPATRSFQALRI +N E+E L L L GG L+V+SF Sbjct: 190 LARLIAENVPGRPEPGKHPATRSFQALRIAINGELEALDALLERICDLLAPGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK++ +S + + + + P + + A N R+RSA Sbjct: 250 HSLEDRRVKRYIRKQSTVGDLPPSVPVAPEALQPRLRSVGRALRPGEAEQAANPRARSAV 309 Query: 311 LRAGMR 316 +R R Sbjct: 310 MRVAER 315 >gi|262373648|ref|ZP_06066926.1| MraW methylase [Acinetobacter junii SH205] gi|262311401|gb|EEY92487.1| MraW methylase [Acinetobacter junii SH205] Length = 306 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + L + +DATFG GG+++ + V A D+DP A+ Sbjct: 3 HISVLLHETVDGVLAGRDTGIYVDATFGRGGHTKLLLSKLDQNARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ LQ + + VDGV+ DLGVSS Q+D +RGFSF ++GP Sbjct: 63 Q-LEQEDPRFKIIHASFADLQSELANIGITEVDGVMADLGVSSPQLDQAERGFSFMQNGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A++ + + + L I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGPTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKQA---GELTTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A + LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINRELEDIEIFLPQAVELLKPKGQLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S M + + +++ + ++ +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDTGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEKK 305 >gi|68565414|sp|Q5GW34|RSMH_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 337 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 174/310 (56%), Gaps = 7/310 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q++ RGFSF K Sbjct: 61 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGK 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 297 Query: 309 AKLRAGMRTV 318 A LR + Sbjct: 298 AVLRVAEKLE 307 >gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM] gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM] Length = 314 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 140/313 (44%), Positives = 191/313 (61%), Gaps = 6/313 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82 ++E +IA + P LD T GAGGY+R G+ VI +DRDP A + +Y Sbjct: 1 MIEPLIAEVAPV-TGTWLDGTLGAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYG 59 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 ++ L + FS++ DY D +DGVV DLGVSSMQ+D RGFSFQK GPLDMRMS G Sbjct: 60 DRLELVRGVFSKMDDYATD--LDGVVLDLGVSSMQLDQPMRGFSFQKDGPLDMRMSQEGE 117 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A+ +VN A+ DL IL + GEE+ + RIA AIV+ R+ A TT LS +++K + Sbjct: 118 TAAHIVNSADEGDLADILFLYGEERASRRIARAIVRAREEAAIVTTLQLSEIVEKCLPRP 177 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 K + HPATRSFQALRI VN+E ELA+GL +AE+ALK GG L VV+FHS+EDR+VK+F Sbjct: 178 KPGQAHPATRSFQALRIAVNDEYGELAEGLAAAERALKPGGKLAVVTFHSIEDRMVKRFI 237 Query: 263 ASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 SR G RH + F +++K ++ ++ N R+RSA+LR RT Sbjct: 238 QSRLGGAGRGSRHAPETIEVAPQFTQVSRKATSASEAEIDRNPRARSARLRVATRTDAPP 297 Query: 322 IE-DDSFVHLPRL 333 D + +P+L Sbjct: 298 APLDRRAIGMPQL 310 >gi|301510055|ref|ZP_07235292.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB058] Length = 307 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTIGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|329115569|ref|ZP_08244291.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter pomorum DM001] gi|326694997|gb|EGE46716.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter pomorum DM001] Length = 335 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 134/325 (41%), Positives = 186/325 (57%), Gaps = 18/325 (5%) Query: 9 MSS----AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIA 63 M++ T H+PV+L +V+ L PA G ILD TFG GGYS + K NV Sbjct: 1 MNALSAFTPPETAQGHIPVMLPEVLEYLYPADGGRILDCTFGGGGYSSAILKSADCNVWG 60 Query: 64 LDRDPFAVSCGQETMRDYK-----EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115 +DRDP A++ GQ R + + + Q +F +Q DG+V DLGVSS Sbjct: 61 IDRDPDAIARGQALSRHFPAANGTSRLHMLQGSFGNMQALASAAGISTFDGIVLDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D DRGFSF+ GPLDMRM SG SA+D+VN+A +L I GEE+ A R+A A Sbjct: 121 FQLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARA 180 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +V R PF+TT L++L++ + + + I ATR+FQ LRI VN+E+ E+ +GL A Sbjct: 181 VVNARSEMPFETTTQLANLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQA 239 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKK 291 L GG L+VVSFHSLEDR+ K+ +GK + P + A A F ++T K Sbjct: 240 LDMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPEADFVALTHK 299 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 PT + ++N R+RSA+LRA M+ Sbjct: 300 ARRPTDTECSYNPRARSARLRAVMK 324 >gi|291288111|ref|YP_003504927.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM 12809] gi|290885271|gb|ADD68971.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM 12809] Length = 308 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+PV++ +V+ L P + LD T G GG+S + + ++ LDRD AV+ + Sbjct: 2 KHIPVMIREVLKYLPVDPDGITLDMTGGGGGHSAAMLEKISLKGRLVILDRDLDAVARLK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ + FS + + V V+ D GVS + +RGFSF+ GP Sbjct: 62 ERFKGTPN-VTIAHSNFSDFDRVLGELGISSVTSVLADFGVSLYHLKVAERGFSFRSEGP 120 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA+DVVN + ++L+ I+ GEE A IA AI + R+ +TT L Sbjct: 121 LDMRMNQDDTLSAADVVNSYSRENLSSIIKKYGEENFAWNIAGAIERAREVEKIETTTRL 180 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + ++ V + I+PAT++FQALRIFVN+E++ + + L E + GG + +SF Sbjct: 181 AEIVASAVPRKAQKPGINPATKTFQALRIFVNSELDSIEEMLGKLENYVDEGGRVAFISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + + F+ IT+K + P ++++ N SRSA Sbjct: 241 HSLEDRIVKDAFREFEKECVCPPELPVCNCSKVRTFRQITRKPLEPREDELEMNPLSRSA 300 Query: 310 KLRAGMRT 317 K+R R Sbjct: 301 KMRVAERV 308 >gi|167838012|ref|ZP_02464871.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis MSMB43] Length = 313 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 166/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSEAGRLIAFDKDPRAIETAKG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IADARFEIVHDSFAAMKGALDARGVARVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A +L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + + + + P+ +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERIA 312 >gi|295135641|ref|YP_003586317.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87] gi|294983656|gb|ADF54121.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87] Length = 298 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 168/307 (54%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVLL++ + LN P V +D TFG GG+SR K + A D+D A+ Sbjct: 1 MEYHNPVLLKESVDGLNIKPDGVYVDVTFGGGGHSREILKRLGEHGKLFAFDQDTDALQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F+L F L+ ++ VDG++ D GVSS Q + +RGFS + + Sbjct: 61 -----KIEDPRFTLINENFRFLKRFLRFYGVKKVDGILGDFGVSSHQFNEAERGFSTRFN 115 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA V+N+ + + L + + K A ++A IV R++ P + ++ Sbjct: 116 AKLDMRMDQSNSLSAYQVINEYDEEQLKSLFYQYADLKNAPKLARIIVSERKNKPIENSE 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL+ L++ ++ K N+I + +QA+RI VN EIE L + L E ++ G + ++S Sbjct: 176 DLNELLKPHLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEDLVEKNGRISLIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK++ S + + + + P F+ + ++VP++++++ N R+RSA Sbjct: 234 YHSLEDRLVKRYIRSGLFEGEPEKDFYGNISVP--FKKV-GGLIVPSKQEISENNRARSA 290 Query: 310 KLRAGMR 316 KLR + Sbjct: 291 KLRIAKK 297 >gi|193214541|ref|YP_001995740.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC 35110] gi|263446020|sp|B3QWS9|RSMH_CHLT3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193088018|gb|ACF13293.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC 35110] Length = 321 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 20/321 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRD 67 + H PVLLE+ + L + + +DAT G G+S+ +I +DRD Sbjct: 2 SDFYHKPVLLEESVHWL-VSESGMYIDATLGGAGHSKEILHRLETQHLLSNSLLIGIDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY--------VPDKGVDGVVFDLGVSSMQID 119 A+ + Y + + F+ L+ + + G++ DLG+SS QID Sbjct: 61 ANAIRAATTRLATYAAHAHILRGRFADLKLLLETNGLLDSGNHPIRGILLDLGISSHQID 120 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSFQ+SGPLDMRMS + ++A++VVN + + L++I GEE++A IA IV+ Sbjct: 121 APARGFSFQQSGPLDMRMSDTAQLTAAEVVNHYDERSLSKIFFDYGEEREAKWIARKIVE 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ P +TT L+ LI++ + + R FQA+RI VN E++EL L++A + Sbjct: 181 ARKQTPLETTAALALLIRQNLNRKSPVEQTKTLARIFQAIRIEVNGELDELKAVLQAAHE 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296 L G L+V+S+HSLEDR+VK+FF + + + ++ A + +TKK V+ + Sbjct: 241 VLSEKGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIKTATMKILTKKPVLAS 300 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 +E++ N R+RSAKLR + Sbjct: 301 EEEIQENSRARSAKLRVAEKI 321 >gi|167586011|ref|ZP_02378399.1| S-adenosyl-methyltransferase MraW [Burkholderia ubonensis Bu] Length = 313 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 164/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRAVLARLGAAGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFAIVHDSFASMQGALAARGIGKVSGVLLDLGVSSPQVDDPQRGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I +K P+ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGRKF--PSDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|282902029|ref|ZP_06309927.1| methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193116|gb|EFA68115.1| methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 299 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 159/311 (51%), Gaps = 24/311 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 + ++ H+PVL E++I L G LD T G GG+SR + + V+A+D+D Sbjct: 9 TPLNQFTFSHIPVLGEELIRGLTIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 68 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ + + ++ ++ F+ P DG++ DLGVSS +D RGFSF+ Sbjct: 69 DALKAAKINLSEFGDRVDFLHTNFANFP--FPPNTYDGILADLGVSSYHLDNPVRGFSFR 126 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM+ +A+D+VN N ++LT I GEE+ + +IA I++ T Sbjct: 127 NTANLDMRMNQQQSLTAADIVNGWNEQELTHIFFHYGEERLSRKIARRIIE--NRPFSTT 184 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ S+ + RIHPATR FQALR+ VN+E++ L L A +L GG + + Sbjct: 185 TELAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIAL 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK + + +TKK + T+ ++ N RSR Sbjct: 245 ISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATESEIQHNPRSR 287 Query: 308 SAKLRAGMRTV 318 SAKLR + Sbjct: 288 SAKLRIAQKVA 298 >gi|212213353|ref|YP_002304289.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuG_Q212] gi|263447408|sp|B6J2R7|RSMH_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212011763|gb|ACJ19144.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuG_Q212] Length = 307 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 11/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVL ++V+ L P + +D TFG GG+S + ++A+D+DP AV+ Sbjct: 1 MEAHKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + S+ TF+ LQ D + V+G++ D+GVSS Q++ RGFSF K Sbjct: 61 ENKALFE-DARLSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P T Sbjct: 120 DGPLDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 Q+LS ++ K Y + + HPATR+FQA+RIF+N E++EL + L + L GG L V+ Sbjct: 180 QELSDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK+F S + I + + + ++ PT+ ++ N R+RS Sbjct: 239 SFHSLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPL-GSLIRPTEAEIKKNPRARS 297 Query: 309 AKLRAGMR 316 A+LR + Sbjct: 298 ARLRIVEK 305 >gi|83312939|ref|YP_423203.1| S-adenosyl-methyltransferase MraW [Magnetospirillum magneticum AMB-1] gi|123540765|sp|Q2W0I1|RSMH_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82947780|dbj|BAE52644.1| S-adenosyl-methyltransferase mraW [Magnetospirillum magneticum AMB-1] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 130/298 (43%), Positives = 179/298 (60%), Gaps = 8/298 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PVLL +VIA L P V LD TFGAGGYSR+ V A+DRDP AV+ G+ Sbjct: 4 QPHIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILAASACRVWAIDRDPTAVARGKL 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ + F + + + VDG+ D+GVSSMQID +RGFSF K GPL Sbjct: 64 LEEGSAGRFSMIEGRFGDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGPL 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D+VN +L I+ GEE+ + R+A AIV+ R+ F+ T +L+ Sbjct: 124 DMRMETKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFERTGELAE 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++K V S + I PATR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FHSL Sbjct: 184 VVRKVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVVTFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308 EDR+VK F +RSG+ +P A F +++K + P ++ N R+RS Sbjct: 243 EDRVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSRKAIGPAPDEARANPRARS 300 >gi|254391587|ref|ZP_05006786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|294812140|ref|ZP_06770783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|197705273|gb|EDY51085.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|294324739|gb|EFG06382.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 126/314 (40%), Positives = 182/314 (57%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL PA PG V++D T G GG+S + +IALDRDP A Sbjct: 2 SNTRHVPVMLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + Y E+ +L A + +L + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSAERLAPYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R + PF Sbjct: 122 AQDAPLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFS 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L LI+ + + K +PA R+FQALRI VN E+ L + + +A AL G + Sbjct: 182 TSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT ++VA NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R E Sbjct: 302 AAPARLRGAQRIRE 315 >gi|241668885|ref|ZP_04756463.1| S-adenosylmethionine-dependent methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877417|ref|ZP_05250127.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843438|gb|EET21852.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 305 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ IA LN P + +DATFG GG+S++ +IA D+D A+ Sbjct: 1 MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F + A+F+ + DY VDG++ DLGVSS Q+D +RGFSF GP Sbjct: 61 NFQ--NDNFEIVHASFTYIYDYCLQHNLLGEVDGIIMDLGVSSPQLDNANRGFSFTHDGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++AS + + +V +LT I + GEE+ A +IA I TT Sbjct: 119 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKDYIAENGSITTTHQ 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + K + +PATR FQALRI+VN+E+++L L S +K GG + +SFH Sbjct: 179 LAELIRAT-IGKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F S M+P + + ITKK Q++++ N RSRS Sbjct: 238 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSRS 296 Query: 309 AKLRAGMR 316 A LR + Sbjct: 297 AILRVVEK 304 >gi|121606314|ref|YP_983643.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans CJ2] gi|262824843|sp|A1VSU4|RSMH_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120595283|gb|ABM38722.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans CJ2] Length = 306 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 118/313 (37%), Positives = 171/313 (54%), Gaps = 11/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + H VLL + I L P +DATFG GG+SR V A D+D Sbjct: 1 MVKGTWTHRTVLLNEAITALQVNPDGHYIDATFGRGGHSRLLLSQLSALGRVTAFDKDLD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ Q +FS+ F L +P V GV+ DLGVSS QID +RGFSF+ Sbjct: 61 AIAEAQSI---DDPRFSIRHQGFMHLDQ-MPQASVAGVLMDLGVSSPQIDNPERGFSFRN 116 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G S ++ + A+++ +T ++ GEE+ A +A AI +RRQ T Sbjct: 117 EGPLDMRMDTTRGQSVAEWLQDASIEAMTEVIRDYGEERFAGLVARAIDRRRQEHGPLQT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + + + ++ PATR+FQALRIF+N E+EEL Q L+++ K L+ GG L+V+ Sbjct: 177 TAELADVVASAVKTREPGKDPATRTFQALRIFINAELEELQQALQASLKVLQPGGRLVVI 236 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A+ S +V R + +++ + ++E+VA N RSRS Sbjct: 237 SFHSLEDRIVKQFIAAHSREV-YDRRAPFAAPKVMQLKALGR--TKASEEEVAGNPRSRS 293 Query: 309 AKLRAGMRTVERS 321 A +R RT E + Sbjct: 294 AVMRVAERTGEAA 306 >gi|300112935|ref|YP_003759510.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113] gi|299538872|gb|ADJ27189.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113] Length = 318 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 174/318 (54%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M + H PVLL +VI L + +D TFG GG++++ ++ +D Sbjct: 1 MDKNKTSSSHQHQPVLLREVIQALAIRRDGIYIDGTFGRGGHAQAILAALSSEGRLLGVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 +DP + +F++ QA+ L V + + ++G +FDLGVSS Q++ Sbjct: 61 KDPA-AIAAGHALAQKDGRFTIVQASIGDLARVVSERGWLRKINGALFDLGVSSPQLENA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GPLDMRM+ + G SA++ + A K++ +L + GEE+ RIA AI++ R Sbjct: 120 ERGFSFLQDGPLDMRMNPAVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQAR 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T+ L+ ++ K + + RIHPATRSFQA+RIF+N+E+EEL L A AL Sbjct: 180 GLNSLTRTKQLAEVVAKAIPRWER-RIHPATRSFQAIRIFINHELEELRAALEQALAALA 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQE 298 G L V+SFHSLEDR+VK+FF ++ + A + + K + P E Sbjct: 239 VKGRLAVISFHSLEDRIVKRFFREKARGEDLPLDLPVMQEDFQQASLKVL-GKPIWPVPE 297 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N R+RSA+LR + Sbjct: 298 EIAHNPRARSARLRVAEK 315 >gi|92114320|ref|YP_574248.1| methyltransferase [Chromohalobacter salexigens DSM 3043] gi|123265653|sp|Q1QVF9|RSMH_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91797410|gb|ABE59549.1| methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 331 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 168/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL+ + L P LD TFG GG+SR+ + ++A+DRDP A++ G Sbjct: 28 HASVLLDGAVEALMTDPDGCYLDGTFGRGGHSRAILQRLSPQGRLLAIDRDPAALAEGAT 87 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG----VVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+L F++L D D + V+ D+GVSS Q+D RGFSF + GP Sbjct: 88 W---DDPRFTLRHGRFAELDDIARDAALHRRLSGVLLDVGVSSPQLDDASRGFSFLRDGP 144 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA+D + + + +D++ + GEE+ A RIA AIV RR P T DL Sbjct: 145 LDMRMDPTQGESAADWLARVSERDMSDVFKRYGEERFARRIAKAIVARRGERPITHTADL 204 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + + HPATR FQA+RI VN E+++L L +A ++L GG L+V+SFH Sbjct: 205 AELVKAAHPAWEKGK-HPATRVFQAIRIHVNGELDQLEAALAAALESLAPGGRLVVISFH 263 Query: 252 SLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+F + R + + ++ K P ++++A N R+RSA Sbjct: 264 SLEDRLVKRFIRDKVRGDTHLPRDLPIRDTQLNRRLAMVGKARRPDEDEIALNPRARSAV 323 Query: 311 LRAGMR 316 +R + Sbjct: 324 MRVAQK 329 >gi|263460310|sp|A4TBF6|RSMH_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 317 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVLL++ + LL P G ++DAT GAGG+S F +I LDRDP A+ Sbjct: 5 QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 65 IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 124 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT Sbjct: 125 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 184 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L L+ + + HPA R+FQALRI VN E+E L + +A +AL+ G L V Sbjct: 185 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++ SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 245 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 304 Query: 308 SAKLRAGMRT 317 +LRA + Sbjct: 305 PVRLRAVEKV 314 >gi|126729243|ref|ZP_01745057.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37] gi|126710233|gb|EBA09285.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37] Length = 330 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 135/320 (42%), Positives = 190/320 (59%), Gaps = 12/320 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76 HVPVLL ++ + P V +D TFGAGGY+R + G+ VI +DRDP A Sbjct: 11 APHVPVLLAPLLREVAPVR-GVWIDGTFGAGGYARGLVEAGAERVIGIDRDPLAHEMAAA 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + D+ SL + F + DGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 70 WLDDWP-AISLVRENFCNMDKV--ADSADGVVLDLGVSSMQLDLAERGFSFMRDGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G +A+D+VN + +L +L + GEE+Q+ RIA I + PF TT +L+ LI+ Sbjct: 127 MGQAGPTAADLVNDLSESELADVLYVYGEERQSRRIARRI---VEHRPFLTTLELAGLIE 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 +T+ +K + H ATRSFQALRI VN E E L QGL +AE+ LK GG+L VV+FHS+EDR Sbjct: 184 RTIGRTKPGQAHAATRSFQALRIAVNGEYEALWQGLMAAERVLKPGGMLAVVTFHSVEDR 243 Query: 257 LVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F + V R+ + A F+ +T+K V P ++++ N R+RSAKLR Sbjct: 244 MVKRFLQLHGDRKRHVNRYATETPEAEAPFEIVTRKAVGPDKDELTANPRARSAKLRVAR 303 Query: 316 RT---VERSIEDDSFVHLPR 332 RT E D+ + + + Sbjct: 304 RTDLPAEAVAADEIAMPMLK 323 >gi|194246838|ref|YP_002004477.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali] gi|262824840|sp|B3R0Q2|RSMH_PHYMT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193807195|emb|CAP18636.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali] Length = 300 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 170/304 (55%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H+PVL ++V+ LN + +DAT G GG+S + + A D+D FA+ ++ Sbjct: 4 NHIPVLPKEVLKYLNVKSSGIYVDATLGGGGHSELILEKLKKGFLYAFDQDIFAIKQSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L + F L+ + VDG++FDLG+SS QID +RGFS+ + L Sbjct: 64 LFAN-NHKIELIHSNFFFLKQELNKRGVFFVDGIIFDLGLSSFQIDDKERGFSYLSNEFL 122 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A ++N + + L I G+EK +S IA I+K+R P TT +L Sbjct: 123 DMRMDREQKLTAHYIINNYSFEKLRNIFFNFGQEKNSSLIAAEIIKKR---PLNTTFELV 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + K F+ N + H + + FQALRI VN E+E L + L LK G ++V+SFHS Sbjct: 180 EIADK---FNYNRKGHSSKKIFQALRIEVNKELELLQKTLHQCLSLLKEGSSIVVISFHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK FF + S + + + V + ITKKVV P+ E++AFN RSRSAKLR Sbjct: 237 LEDRLVKNFFRANS-IINLPTKLPIVSNFKTVLKIITKKVVKPSLEEIAFNHRSRSAKLR 295 Query: 313 AGMR 316 A ++ Sbjct: 296 AAVK 299 >gi|308048060|ref|YP_003911626.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799] gi|307630250|gb|ADN74552.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799] Length = 315 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 164/314 (52%), Gaps = 13/314 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H+ VLL++ + L P + +D TFG GG+SR +I +DRDP Sbjct: 2 SESFRHITVLLDEAVNGLQLKPDGIYVDGTFGRGGHSRHILSQLGPNGRLIGIDRDPQ-A 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +F + FS + +YV +DGV+ DLGVSS Q+D +RGFSF Sbjct: 61 VAVAQQLAAEDPRFQIVHGPFSGIAEYVEALGLTGQIDGVLLDLGVSSPQLDDAERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAP 184 + GPLDMRM G +A++ + +A D+ +L GEEK A IA IV+ Sbjct: 121 LRDGPLDMRMDNSRGETAAEWLARAEANDIAWVLKTFGEEKFARPIARKIVEHIAAGEPM 180 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ + + T ++ HPATRSFQA+RI++N+E+EE+ + L A +ALK GG Sbjct: 181 DRTSHLAGLIEKMTPKHKRDQGKHPATRSFQAIRIYINSELEEIEKALMGALEALKPGGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAF 302 L V+SFHSLEDRLVK+F S + + + + K + P+ +V Sbjct: 241 LSVISFHSLEDRLVKRFMRRESQGEPVPHGLPLTEEQMKQTRRLKTVGKALKPSDTEVED 300 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR G + Sbjct: 301 NTRARSSVLRVGEK 314 >gi|190572794|ref|YP_001970639.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia K279a] gi|262826755|sp|B2FNN0|RSMH_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190010716|emb|CAQ44325.1| putative S-adenosyl-methyltransferase mraW [Stenotrophomonas maltophilia K279a] Length = 322 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 121/314 (38%), Positives = 180/314 (57%), Gaps = 8/314 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+PVL +V+ L LD TFG GG++R ++ +D+DP Sbjct: 12 VSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPE 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ + + S+F+ +F+QL + +G+DGV+FDLGVSS Q+D +RGFSF Sbjct: 72 AIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFG 130 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM G SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF Sbjct: 131 KDGPLDMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFSR 190 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ LI +V ++IHPATRSFQA+RI +N E+ +L GL +A + LK GG L V Sbjct: 191 TAELAELI-ASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAV 249 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK++ + A R + + A I + T E++A N R+R Sbjct: 250 ISFHSLEDRIVKQYMNRLAKAPPANRRLPEAVAFVPTLDLI-GGAIKATDEELAANPRAR 308 Query: 308 SAKLRAGMRTVERS 321 SA LR + + Sbjct: 309 SAVLRVAQKREADA 322 >gi|126726611|ref|ZP_01742451.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2150] gi|126703940|gb|EBA03033.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2150] Length = 317 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 135/318 (42%), Positives = 183/318 (57%), Gaps = 9/318 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 HVPVLL +IA P LD TFGAGGY+R+ G++ VIA+D+DP + Sbjct: 4 APHVPVLLRPIIAKTAPIS-GTWLDGTFGAGGYTRALLDAGADTVIAVDQDPLVFDMAKS 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y + + F+ L + +DG+V DLGVSSMQID +RGFSF + GPLDMR Sbjct: 63 WADEYGARLVPVASNFADLDKAGQN--LDGIVLDLGVSSMQIDQAERGFSFMQDGPLDMR 120 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG +A+D+VN A +L IL GEE+ + RIA AI+ R T + ++++ + Sbjct: 121 MSQSGPTAADLVNTATEAELADILFQYGEERASRRIAKAIIAAR--PLNTTAELVAAITE 178 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 V K + HPATRSFQALRI VN+E+ L +GL +AE+AL G L VV+FHSLEDR Sbjct: 179 --VAPVKKGQSHPATRSFQALRIAVNDELGALIRGLEAAERALAPNGWLAVVTFHSLEDR 236 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F SRS R+ + F+ +K + E+VA N R+RSA LR R Sbjct: 237 IVKRFLQSRSAISQGSRYAPEQKSAAPTFELQGRKAIKADDEEVAANPRARSASLRLAKR 296 Query: 317 TVERSIEDD-SFVHLPRL 333 T + D + LP L Sbjct: 297 TTAAARPSDWGKLGLPGL 314 >gi|74316129|ref|YP_313869.1| methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|88909225|sp|Q3SMI1|RSMH_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|74055624|gb|AAZ96064.1| methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 311 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 169/308 (54%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL ++ +A L P V +DATFG GG+SR ++ALDRDP + Sbjct: 5 HVPVLAQEAVAALAIKPEGVYVDATFGRGGHSRMILARLGTLGRLVALDRDP---AAIAA 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +L Q+ FS+L + VDG++ D+GVSS Q+D RGFSF+ PL Sbjct: 62 GAALDDPRLTLRQSEFSRLGKVLDALGIARVDGILLDIGVSSPQLDDAARGFSFRFDAPL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SGISA+D + A ++++ ++ GEE+ A IA A+V RQ +T L+ Sbjct: 122 DMRMDPGSGISAADWLATAEEEEISEVIRTYGEERFAKPIARALVAARQKEAITSTAQLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I V + + HPATRSFQA+RI++N E+EEL L + L+AGG L V+SFHS Sbjct: 182 GIIAAAVKKREPGQ-HPATRSFQAIRIYLNRELEELKAVLPQCVERLRAGGRLAVISFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F + S A + A + + + + +VA N R+RSA L Sbjct: 241 LEDRIVKRFLRTESLGEQAPPRLPIPAAMLKAGRLRLVGRAQHASDAEVAANPRARSAVL 300 Query: 312 RAGMRTVE 319 R R E Sbjct: 301 RVAERVAE 308 >gi|237756569|ref|ZP_04585091.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium yellowstonense SS-5] gi|237691269|gb|EEP60355.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium yellowstonense SS-5] Length = 293 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 176/308 (57%), Gaps = 22/308 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 + +H VL +V+ G + +DAT G GG+S K +I LD+D FA+ Sbjct: 1 MVEHYSVLHREVLEFSKLVAGGIFVDATVGGGGHSYLILKQNPNLKLIGLDKDDFALKVA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E +++++++ +L +++F L + + ++G++FD GVS+ Q+ +RGFSFQ+ Sbjct: 61 KERLKEFEDRITLLKSSFKDLDKVLQSLQIREINGILFDFGVSTFQLKL-ERGFSFQREE 119 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +A DVVN +DL I+ GEEK AS+IA +I + R+ +TT++ Sbjct: 120 FLDMRMDTTQKLTAYDVVNYYREQDLYNIIKTYGEEKFASKIAKSIAEYRKKKKIETTKE 179 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + ++ +IHPATR+FQA+RI VNNE++++ +GL A L G ++ +S Sbjct: 180 LADIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGTIMAIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F + +TKK + P+ E++ N SRSA Sbjct: 240 FHSLEDRIVKNTFKKY--------------KELKFLEILTKKPITPSDEEIKENPASRSA 285 Query: 310 KLRAGMRT 317 KLR G R Sbjct: 286 KLRVGRRI 293 >gi|297559864|ref|YP_003678838.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844312|gb|ADH66332.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 357 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 110/323 (34%), Positives = 175/323 (54%), Gaps = 10/323 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVI 62 + +A HVPV+L++++ LL P PG V++D T G GG+S + + ++ Sbjct: 33 RLDAARSGADPLHVPVMLDRIVELLAPALERPGAVLVDGTLGLGGHSEALLRACPGMRLV 92 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQID 119 +DRD A+ + Y ++ A +S + D V+ DLGVSS Q+D Sbjct: 93 GVDRDTTALERSAARLAPYADRTHFVHAVYSDIPRALDEAGAAEADAVLLDLGVSSPQLD 152 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 DRGF++ PLDMRM ++A++VVN V +LTR+L GEE+ ASR+A AI + Sbjct: 153 ETDRGFAYAHDAPLDMRMDRDQSLTAAEVVNTYPVAELTRVLRTYGEERFASRVARAIER 212 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 +R AP ++T+ L+ L+++ + ++ HPA R+FQ LRI VN E+ L + L +A Sbjct: 213 QRAQAPIESTRALAELVREAIPAATRRTGGHPAKRAFQGLRIEVNAELSILERALPAAIA 272 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR+ K+ A+ + +P + +T+ +PT Sbjct: 273 RLAGGGRVAVLSYHSLEDRMTKRALAALATDTTPADLPVPLPERQPELRLLTRGAELPTD 332 Query: 298 EDVAFNRRSRSAKLRAGMRTVER 320 E+ N R++SA+LRA R Sbjct: 333 EENERNPRAQSARLRAAERVRPP 355 >gi|318607135|emb|CBY28633.1| rrna small subunit methyltransferase H [Yersinia enterocolitica subsp. palearctica Y11] Length = 303 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 169/309 (54%), Gaps = 19/309 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 1 MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGCLIAIDRDPQAIKAAKSI--- 57 Query: 81 YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 58 TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M GISA++ + +A+ D+ +L GEE+ A R+A AIV+ + P T++L+ LI Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVECNLTQPMTRTKELADLI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 178 ANA-SPFREKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 R+VK F S + + A +S+ K ++P +VA N R+RS+ Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 295 LRFAERIKE 303 >gi|224419084|ref|ZP_03657090.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] gi|253828022|ref|ZP_04870907.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313142594|ref|ZP_07804787.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] gi|253511428|gb|EES90087.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313131625|gb|EFR49242.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] Length = 311 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 156/308 (50%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H+ VL ++V+ N G +++D T G GG+S + + + I +D+D A++ Sbjct: 4 PHISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDEAIA 63 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + ++FS+ FS + + + G++ D+GVSSMQ D +RGF F Sbjct: 64 LAKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCFDSE 123 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 +A D+VN + +L RI GE ++ ++A+ IV+ R+ + + Sbjct: 124 FLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITSAKM 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG-LLIVVS 249 LS I K K+ +IHPAT +FQALRI VNNE+ EL L+ + L ++S Sbjct: 184 LSQFIAK---HFKHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR++K F + + + +S+ KK ++P +E++ N R+R Sbjct: 241 FHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKGRSLYKKPIIPKEEEIKDNPRAR 300 Query: 308 SAKLRAGM 315 S+K+R Sbjct: 301 SSKMRVFE 308 >gi|297199072|ref|ZP_06916469.1| MraW methylase [Streptomyces sviceus ATCC 29083] gi|197715975|gb|EDY60009.1| MraW methylase [Streptomyces sviceus ATCC 29083] Length = 318 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 183/314 (58%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL P PG V++D T G GG+S + + +IALDRD A Sbjct: 2 SQSRHVPVMLQRCLDLLAPALERPGSVVVDCTLGLGGHSEALLQRFPEARLIALDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSGERLAPFGERATLVHAVYDELPDVLDRLGIARVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R PF Sbjct: 122 AQDAPLDMRMDQTTGMSAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ ++ + K +PA R+FQALRI VN E+ L + + +A KAL GG + Sbjct: 182 NSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+ R R E Sbjct: 302 AAPARCRGAERIRE 315 >gi|118602334|ref|YP_903549.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|262826332|sp|A1AVX1|RSMH_RUTMC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118567273|gb|ABL02078.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 307 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 166/307 (54%), Gaps = 12/307 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCG 74 H V+L + I LN + +DATFG GG+++ +IA D+D A+ Sbjct: 4 NHHQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKLGEQGKLIAFDQDINAIEYA 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG----VVFDLGVSSMQIDCGDRGFSFQKS 130 + D + +L + FS + + + +G+ ++ DLGVSS Q+D RGFSF+ Sbjct: 64 HKNFTDSR--LTLIYSAFSNMLNIITQQGLMSKIDGILMDLGVSSPQLDNAQRGFSFKAD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ + G+SA+ +N AN +++ ++ G+EK++ IA I K +Q +TT Sbjct: 122 GPLDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKRSRHIATRIKKYQQKHTLETTL 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ K V KN HPATR+FQA+RIF+N E+++L L ++ L+ G L ++S Sbjct: 182 ALAGIVSKVVKRQKN--KHPATRTFQAIRIFINQELKQLEDVLEQSKDILRKDGRLSIIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHS+EDR+VK F S + + + + ++ +++ N+R+RSA Sbjct: 240 FHSIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTCLKNLGKYFASKAEISRNKRARSA 299 Query: 310 KLRAGMR 316 LR + Sbjct: 300 ILRVASK 306 >gi|167626453|ref|YP_001676953.1| S-adenosyl-methyltransferase MraW [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254813209|sp|B0TZ13|RSMH_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167596454|gb|ABZ86452.1| S-adenosylmethionine-dependent methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 308 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ IA LN P + +DATFG GG+S++ +IA D+D A+ Sbjct: 4 MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F + A+F+ + DY VDG++ DLGVSS Q+D +RGFSF GP Sbjct: 64 NFQ--NDNFEMVHASFTYIYDYCLQHNLLGRVDGIIMDLGVSSPQLDNANRGFSFTHDGP 121 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++AS + + +V +LT I + GEE+ A +IA I TT Sbjct: 122 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKGYIAENGSITTTHQ 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + K + +PATR FQALRI+VN+E+++L L S +K GG + +SFH Sbjct: 182 LAELIRAT-IGKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F S M+P + + ITKK Q++++ N RSRS Sbjct: 241 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSRS 299 Query: 309 AKLRAGMR 316 A LR + Sbjct: 300 AILRVVEK 307 >gi|258542962|ref|YP_003188395.1| S-adenosyl-methyltransferase MraW [Acetobacter pasteurianus IFO 3283-01] gi|256634040|dbj|BAI00016.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01] gi|256637100|dbj|BAI03069.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-03] gi|256640152|dbj|BAI06114.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-07] gi|256643209|dbj|BAI09164.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-22] gi|256646264|dbj|BAI12212.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-26] gi|256649317|dbj|BAI15258.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-32] gi|256652303|dbj|BAI18237.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655361|dbj|BAI21288.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-12] Length = 335 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 133/325 (40%), Positives = 185/325 (56%), Gaps = 18/325 (5%) Query: 9 MSSAIHHTIGD----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIA 63 M++ + + H+PV+L +V+ L+PA G+ ILD TFG GGYS + K NV Sbjct: 1 MNALSSFSHPETAQGHIPVMLAEVLEYLHPADGERILDCTFGGGGYSSAILKSADCNVWG 60 Query: 64 LDRDPFAVSCGQETM-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115 +DRDP A++ GQ D + L Q +F + DG+V DLGVSS Sbjct: 61 IDRDPDAIARGQVLSRTFPTADGGSRLHLLQGSFGNMLALASAAGISTFDGIVLDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D DRGFSF+ GPLDMRM SG SA+D+VN+A +L I GEE+ A R+A A Sbjct: 121 FQLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARA 180 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +V R APFQTT L+ L++ + + + I ATR+FQ LRI VN+E+ E+ +GL A Sbjct: 181 VVNARSEAPFQTTTQLADLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQA 239 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKK 291 L GG L+VVSFHSLEDR+ K+ +GK + P + A F ++T K Sbjct: 240 LDMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPETDFVALTHK 299 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 P+ + + N R+RSA+LRA M+ Sbjct: 300 ARRPSDTECSHNPRARSARLRAVMK 324 >gi|134294639|ref|YP_001118374.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4] gi|263446940|sp|A4JB86|RSMH_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134137796|gb|ABO53539.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4] Length = 313 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVDSLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|319957176|ref|YP_004168439.1| s-adenosyl-methyltransferase mraw [Nitratifractor salsuginis DSM 16511] gi|319419580|gb|ADV46690.1| S-adenosyl-methyltransferase MraW [Nitratifractor salsuginis DSM 16511] Length = 319 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 169/317 (53%), Gaps = 13/317 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 M + S KT H+PVLL +V+ + V++D T G G+S + + Sbjct: 1 MSTHSSKT------SLQTPHIPVLLPEVMESFSSLDEGVLIDCTLGYAGHSSALLEAHPK 54 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQ 117 +I +DRDP A+ + + Y+++ L +FS+ L + + V G++ D GVSS+Q Sbjct: 55 LKLIGIDRDPEALEFSAQRLAPYRDRVRLEHGSFSERLPSLIDQEPVVGILADFGVSSLQ 114 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +D +RGFSF + + A DVVN ++ L + GE + A +A AIV Sbjct: 115 LDKKERGFSFASENLDMRMNPEAPLRAYDVVNGYPLERLEYLFREYGEIRPAGALAAAIV 174 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 K R +AP + Q+L+ L + + + HPAT+ FQA+RI VN+E+ E+ + L + E Sbjct: 175 KARANAPISSAQELAELAKTVLRG--KGKTHPATQMFQAIRIEVNDELGEIERLLDTLEA 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295 AG ++ +++FHSLEDRLVK F + S K + I + A+ + +++K Sbjct: 233 KRPAGAIVSLITFHSLEDRLVKNRFRAWSQKCICPPEAIRCTCGGNHALGEMLSRKPRSA 292 Query: 296 TQEDVAFNRRSRSAKLR 312 ++E++ N RSRSAKLR Sbjct: 293 SKEELRSNPRSRSAKLR 309 >gi|282897735|ref|ZP_06305734.1| methyltransferase [Raphidiopsis brookii D9] gi|281197414|gb|EFA72311.1| methyltransferase [Raphidiopsis brookii D9] Length = 305 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 159/311 (51%), Gaps = 24/311 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 + ++ H+PVL E++I LN G LD T G GG+SR + + V+A+D+D Sbjct: 15 TPLNQVPFSHIPVLGEELIRGLNIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 74 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV + + ++ ++ F P DG++ DLGVSS +D +RGFSF+ Sbjct: 75 DAVIAAKTRLSEFGDRVDFLHTNFVNFP--FPPNTYDGILADLGVSSYHLDNPERGFSFR 132 Query: 129 KSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM I+A+D+VN + ++LT I GEE+ + +IA I++ T Sbjct: 133 HTANLDMRMNQQQSITAADIVNGWDEQELTHIFFEYGEERLSRKIARRIIE--NRPFSTT 190 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 TQ S+ + RIHPATR FQALR+ VN+E++ L L A +L GG + + Sbjct: 191 TQLAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIAL 250 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK + + +TKK + T ++ N RSR Sbjct: 251 ISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATDPEIQHNPRSR 293 Query: 308 SAKLRAGMRTV 318 SAKLR + Sbjct: 294 SAKLRIAQKVA 304 >gi|225677071|ref|ZP_03788076.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590893|gb|EEH12115.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 314 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 125/324 (38%), Positives = 181/324 (55%), Gaps = 39/324 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 2 THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61 Query: 78 MRDYKEQFSLFQATFSQLQDY------------------------VPDKGVDGVVFDLGV 113 Y ++ LF FS ++ + GVDGVVFD+GV Sbjct: 62 SVRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGV 121 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172 SSMQ+D GDRGFSF GPLDM M S +AS VN +++ + G E+ + +I Sbjct: 122 SSMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKI 181 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 A AI+ R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+ Sbjct: 182 ARAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGI 240 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 ++A + L G LIVV+FHSLEDR+VK FF F + KKV Sbjct: 241 KAASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKV 288 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + + E+V+ N RSRSAKLRA R Sbjct: 289 IEASIEEVSANPRSRSAKLRAIQR 312 >gi|254525262|ref|ZP_05137317.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14] gi|219722853|gb|EED41378.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14] Length = 322 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 178/314 (56%), Gaps = 8/314 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+PVL +V+ L LD TFG GG++R ++ +D+DP Sbjct: 12 VSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPE 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ + + S+F+ +F+QL + G+DGV+FDLGVSS Q+D +RGFSF Sbjct: 72 AIAVAERDFAP-DPRVSIFRGSFAQLLQWDATADGLDGVLFDLGVSSPQLDVAERGFSFG 130 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM G SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF Sbjct: 131 KDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFTR 190 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ L+ +V ++IHPATRSFQA+RI +N E+ +L GL +A + LK GG L + Sbjct: 191 TAELAELV-ASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAI 249 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK++ + A R + + I + T E++A N R+R Sbjct: 250 ISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRAR 308 Query: 308 SAKLRAGMRTVERS 321 SA LR + + Sbjct: 309 SAVLRVAQKREADA 322 >gi|263506507|sp|Q2NZB1|RSMH_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263506516|sp|B2SNY6|RSMH_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 337 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 7/310 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDTELNVNPRARS 297 Query: 309 AKLRAGMRTV 318 A LR + Sbjct: 298 AVLRVAEKLE 307 >gi|88799431|ref|ZP_01115008.1| S-adenosyl-methyltransferase [Reinekea sp. MED297] gi|88777741|gb|EAR08939.1| S-adenosyl-methyltransferase [Reinekea sp. MED297] Length = 315 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 169/305 (55%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + ++ V +D TFG GG+SR + +I D+DP A++ E Sbjct: 11 HETVLLHETVEAVDVGS-GVYVDGTFGRGGHSRLLLSRLDADARLIVFDKDPLAIATANE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ Q F++L + V G++ DLGVSS Q+D +RGFSF+ GP Sbjct: 70 -LAAEDSRVTVVQRGFAELSSVLKQAGLMGQVSGILLDLGVSSPQLDDAERGFSFRADGP 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G SA+ + + + K+L +L G+E+ + RIA AIV RQ P + T L Sbjct: 129 LDMRMNPESGESAAQWIARVSEKELADVLFQYGDERFSRRIARAIVTARQKQPIERTLQL 188 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I KT + +++ HPAT+SFQA+RI VN E++EL L ++ ALK GG L V+SFH Sbjct: 189 AEII-KTAHPKWDHKKHPATKSFQAIRIAVNGELDELDAVLSASVGALKPGGRLAVISFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+F ++ + + V K + + E+VA N RSRSA L Sbjct: 248 SLEDRAVKQFIKLQAKGPELPPGLPVRDEDIHVTMKAVGKAIKASAEEVAVNVRSRSAVL 307 Query: 312 RAGMR 316 R + Sbjct: 308 RVAEK 312 >gi|330813725|ref|YP_004357964.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp. IMCC9063] gi|327486820|gb|AEA81225.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp. IMCC9063] Length = 333 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 113/330 (34%), Positives = 175/330 (53%), Gaps = 9/330 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 + H PV+L +VI L P I+D TFG GGYS+ + V+ +DRDP Sbjct: 1 MNPHYPVMLNEVITSLEPRSKTTIVDCTFGCGGYSQKILETFPDCKVVGIDRDPSVQEFA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +K +F FS L++ + + VFD G+SS Q+D DRGFSF + Sbjct: 61 TILEKKFKNRFFFINDKFSNLEEIINKHKDEIGSFVFDFGISSFQLDNHDRGFSFNSNIK 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM + ISA +++N+A+++DL I+ I GE+K +IA IV+ R P +TQDL Sbjct: 121 LDMRMGKNKISAYELLNEASLEDLNSIIKIFGEDKDHKKIAKEIVRTRDIKPIHSTQDLC 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I K +K + +P+T++FQA+R+ VN E+ E+ L K ++ V+FHS Sbjct: 181 NAILKAK-GNKYFKKNPSTKTFQAIRMIVNQELSEIFNSLTRVIKICNPDTIVTAVTFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VKK F IP+ Q + + + P+++++ N RSRSA Sbjct: 240 LEDRIVKKIFNISKDSDQNPSRYIPTTHQEKKETFIQRVNNRALKPSEQEIVSNPRSRSA 299 Query: 310 KLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 KLR+ + + +I D + + RL L + Sbjct: 300 KLRSATKIGKGTISMDRKALKMERLFQLEE 329 >gi|296110609|ref|YP_003620990.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154] gi|295832140|gb|ADG40021.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154] Length = 313 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T +HV VLL + +ALLN P + +DAT G GG++ K + + D+D A+ Sbjct: 2 TEFEHVTVLLHEAVALLNIKPDGLYVDATLGGGGHTGEILKQLTSGTLYSFDQDDLAIRY 61 Query: 74 GQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +E D + L F L + ++ VDG+++DLGVSS+Q D G RGFS+ Sbjct: 62 NREQFADDIQAGKLVLIHQNFRTLTSALAERGVTQVDGIIYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM +A +VN + +L RIL GE++ +IA I R++ P T Sbjct: 122 YDADLDMRMDQRQNLTAKIIVNDWSFHELLRILSRYGEDRFPKQIARKIESHREAQPINT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L A L G + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIALLAPSGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLEDRLVK+ F ++ + A + +T+K ++P++ ++ N R Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPSEHEMTINHR 301 Query: 306 SRSAKLRAGMR 316 S SAKLR R Sbjct: 302 SESAKLRGIER 312 >gi|328675727|gb|AEB28402.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida 3523] Length = 305 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 171/309 (55%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S + Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILDKLTTGRLIAFDKDLDAISYANQ 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF GP Sbjct: 61 KFQFSN--FEIVHASFASIYDYCLQHNLLSKIDGIIMDLGVSSPQLDNAARGFSFMHDGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM GI+AS + +V +L+ I + GEE+ A +IA I Q TT + Sbjct: 119 LDMRMDVSKGITASQALEVLSVDELSYIFKVYGEERFARKIALRIKDYIQQNGSINTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +KAGG + +SF Sbjct: 179 LAELIRMTI--GKREKKNPATRCFQALRIYVNNELKDLEALLENILAVIKAGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK +++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKA-KANDDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|42520071|ref|NP_965986.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila melanogaster] gi|88912336|sp|P62478|RSMH_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42409808|gb|AAS13920.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila melanogaster] Length = 314 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 126/324 (38%), Positives = 182/324 (56%), Gaps = 39/324 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 2 THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61 Query: 78 MRDYKEQFSLFQATFSQLQDY------------------------VPDKGVDGVVFDLGV 113 Y ++ LF FS ++ + GVDGVVFD+GV Sbjct: 62 SVRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGV 121 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172 SSMQ+D GDRGFSF GPLDM M S +AS VN +++ + G E+ + +I Sbjct: 122 SSMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKI 181 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 A AI+ R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+EEL +G+ Sbjct: 182 ARAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGI 240 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 ++A + L G LIVV+FHSLEDR+VK FF F + KKV Sbjct: 241 KAASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKV 288 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + + E+V+ N RSRSAKLRA R Sbjct: 289 IEASIEEVSANPRSRSAKLRAIQR 312 >gi|302528477|ref|ZP_07280819.1| MraW methylase [Streptomyces sp. AA4] gi|302437372|gb|EFL09188.1| MraW methylase [Streptomyces sp. AA4] Length = 318 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 168/315 (53%), Gaps = 10/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 +HVPVLL++++ L PA V++DAT G GG+S + + I LDRDP A Sbjct: 3 DSAEHVPVLLDRIVELFAPALADRDAVLVDATVGLGGHSDALLSAFPRLRLIGLDRDPAA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ L + L + V VDG++FDLGVSSMQ+D +RGF++ Sbjct: 63 LERSAERLARHGDRVDLVHTVYDGLPEAVSGLGLSRVDGILFDLGVSSMQLDRAERGFAY 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G +A+DV+N +L RIL GEE+ A RI A+V R+ PF Sbjct: 123 SQDAPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVRAVVAEREKEPFT 182 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L L+ V S+ HPA R+FQALRI VN E+E L + + +A L G + Sbjct: 183 RSGRLVELLYSAVPAASRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGTLAMNGRI 242 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V S+ SLEDRLVK+ A R+ + H + +T+ + ++ N R Sbjct: 243 VVESYQSLEDRLVKQALAERAKSRTPEGLPVELPGHGPELKLLTRGAEKAGESEIEHNPR 302 Query: 306 SRSAKLRAGMRTVER 320 + S +LRA R E Sbjct: 303 AASVRLRAAQRIGEP 317 >gi|158334035|ref|YP_001515207.1| S-adenosyl-methyltransferase MraW [Acaryochloris marina MBIC11017] gi|263433314|sp|B0BYK8|RSMH_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158304276|gb|ABW25893.1| S-adenosyl-methyltransferase MraW, putative [Acaryochloris marina MBIC11017] Length = 298 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 157/309 (50%), Gaps = 23/309 (7%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 +H+ VL +++A L + LDAT G GG+S VIALD+D Sbjct: 2 TPDPGAFNHISVLSHELMAGLMLQEQGLYLDATVGGGGHSALILSQYPQTQVIALDQDIQ 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ + + D ++ +Q FS + DG++ DLGVSS Q+D +RGFSF+ Sbjct: 62 ALEAARAKLHDACDRIQFWQGNFSTYH--PGELRFDGIIADLGVSSAQLDRPERGFSFRY 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM G++A+DV+N + +DL I GEE+ + RIA IV +R Sbjct: 120 DADLDMRMDQSQGLTAADVINTYSERDLADIFYHYGEERFSRRIARKIVSKRPLRTTSDL 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + + + RIHPATR FQALRI VN E++ L + + A LK GG + ++ Sbjct: 180 ARVVASSLPAAKG-RRRRIHPATRVFQALRIAVNQELQVLEKFIEIAPTWLKPGGRIGII 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F S + Q +TKK +V ++++ N RSRS Sbjct: 239 SFHSLEDRIVKIHFRQNS-----------------LLQVVTKKPIVASEQEKRENSRSRS 281 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 282 AKLRFAERV 290 >gi|99034246|ref|ZP_01314308.1| hypothetical protein Wendoof_01000895 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 314 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 126/324 (38%), Positives = 182/324 (56%), Gaps = 39/324 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 2 THTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDL 61 Query: 78 MRDYKEQFSLFQATFSQLQDY------------------------VPDKGVDGVVFDLGV 113 Y ++ LF FS ++ + GVDGVVFD+GV Sbjct: 62 SVRYPDRIKLFIEKFSNIKSILSSVKPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGV 121 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRI 172 SSMQ+D GDRGFSF GPLDM M S +AS VN +++ + G E+ + +I Sbjct: 122 SSMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKI 181 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 A AI+ R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+EEL +G+ Sbjct: 182 ARAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGI 240 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 ++A + L G LIVV+FHSLEDR+VK FF F + KKV Sbjct: 241 KAASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKV 288 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + + E+V+ N RSRSAKLRA R Sbjct: 289 IEASIEEVSANPRSRSAKLRAIQR 312 >gi|166710645|ref|ZP_02241852.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 7/310 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 307 Query: 309 AKLRAGMRTV 318 A LR + Sbjct: 308 AVLRVAEKLE 317 >gi|58583456|ref|YP_202472.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428050|gb|AAW77087.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 353 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 174/310 (56%), Gaps = 7/310 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 17 VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q++ RGFSF K Sbjct: 77 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGK 135 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 136 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 195 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 196 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 254 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 255 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 313 Query: 309 AKLRAGMRTV 318 A LR + Sbjct: 314 AVLRVAEKLE 323 >gi|262831574|sp|A1TAX6|RSMH_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 324 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 17/316 (5%) Query: 19 DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 H+PVLL++ + LL PA G ++DAT GAGG+S F +I LDRDP Sbjct: 6 PHIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDP 65 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + + + V + D ++FDLGVSSMQ+D +R Sbjct: 66 DALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVER 125 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM +A+ V+N + K L R+L + GEEK A RIA IV+RR + Sbjct: 126 GFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRAN 185 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L L+ + + + HPA R+FQALRI VN E+E L + +A + L+ Sbjct: 186 TPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRP 245 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+++ SLEDR+VK FA+ + + H F ++T+ E++ Sbjct: 246 HGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIE 305 Query: 302 FNRRSRSAKLRAGMRT 317 N RS S +LRA + Sbjct: 306 RNPRSASVRLRALEKV 321 >gi|167564207|ref|ZP_02357123.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis EO147] gi|167571357|ref|ZP_02364231.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis C6786] Length = 313 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 167/309 (54%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLGRLGAAGRLIAFDKDPRAIETAKG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A + V GV+ DLGVSS Q+D +RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAALKGALEARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A +L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + + +K P+ +V N R+RSA Sbjct: 246 SLEDRIVKRFMQTHASAPAVDRRLPIRAVDLPSPPLKLLGRKF--PSDAEVLANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|88608489|ref|YP_506785.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str. Miyayama] gi|123491328|sp|Q2GCL1|RSMH_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88600658|gb|ABD46126.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str. Miyayama] Length = 296 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 170/300 (56%), Gaps = 18/300 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H PVLL + + L P G V +DATFGAGGY+R+ V A+DRD Q Sbjct: 13 HKPVLLSEALKFLAPKNGGVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVRRFFQVIE 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ + F + + + VDG+VFDLGVS+MQ+ DRGFSF GPLDMRM Sbjct: 73 NDFPKRTNFINGNFVDIGSLLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S ++A VVN + I+ GEE+ + +IAHAIV R+ TT L+ ++ + Sbjct: 133 RSTLLTAETVVNSYTEVKIASIIYQFGEERMSRKIAHAIVNARRKKRITTTSSLAEIV-R 191 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + + +I PAT++FQALRIF+N+E+ L GLR+A LK G +VVSFHSLEDR+ Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFINDELGALECGLRTALTMLKVGSRAVVVSFHSLEDRI 251 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK F S G F +TKK+VVP++++V N SRSA++R + Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296 >gi|291450857|ref|ZP_06590247.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] gi|291353806|gb|EFE80708.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] Length = 341 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 181/323 (56%), Gaps = 10/323 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALD 65 +A HVPV+L + + LL PA PG V++D T G GG+S + ++ALD Sbjct: 19 AAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALD 78 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 RD A+ E + + ++ +L A + +L + + V GV+FDLGVSSMQ+D Sbjct: 79 RDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAG 138 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ + PLDMRM + GISA++V+N DL RIL GEEKQA RI A+V R Sbjct: 139 RGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERA 198 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF T+ L +I+ + + K +PA R+FQALRI VN E+ L + + +A +L Sbjct: 199 KEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLA 258 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V+S+HSLEDRLVK+ A+ + + + + +T+ +PT+E+V Sbjct: 259 VGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELPTEEEV 318 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A NRR+ A+LR R E E Sbjct: 319 AENRRAAPARLRGAQRIREEHQE 341 >gi|239978979|ref|ZP_04701503.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] Length = 343 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 181/323 (56%), Gaps = 10/323 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALD 65 +A HVPV+L + + LL PA PG V++D T G GG+S + ++ALD Sbjct: 21 AAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALD 80 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 RD A+ E + + ++ +L A + +L + + V GV+FDLGVSSMQ+D Sbjct: 81 RDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAG 140 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ + PLDMRM + GISA++V+N DL RIL GEEKQA RI A+V R Sbjct: 141 RGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERA 200 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF T+ L +I+ + + K +PA R+FQALRI VN E+ L + + +A +L Sbjct: 201 KEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLA 260 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V+S+HSLEDRLVK+ A+ + + + + +T+ +PT+E+V Sbjct: 261 VGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELPTEEEV 320 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A NRR+ A+LR R E E Sbjct: 321 AENRRAAPARLRGAQRIREEHQE 343 >gi|119358493|ref|YP_913137.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM 266] gi|263446010|sp|A1BJY6|RSMH_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119355842|gb|ABL66713.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM 266] Length = 329 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 103/317 (32%), Positives = 157/317 (49%), Gaps = 19/317 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDP 68 H PVL +V L P + +D T G GG++ + + S +I +D+D Sbjct: 4 SAYHEPVLAAQVTDFLVLRP-GIYIDGTLGGGGHALAIMRALETAGFEKNSLLIGIDQDD 62 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDC 120 A+ T+ YKE L + FS ++ + G++ DLGVSS QID Sbjct: 63 EALHAASTTLSWYKETTVLVKGNFSDVRSILGKVCKQRGLVSRAAGILLDLGVSSSQIDT 122 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFS+ + GPLDMRM +A+D+VN + K+L + GEE ++ IA IV Sbjct: 123 AGRGFSYLQKGPLDMRMDRCSSTTAADIVNTLDEKELAGLFFRYGEEPRSRMIARHIVNY 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ T ++ + I + + +I +R FQALRI VN E+E L Q L L Sbjct: 183 REQTGAVTGTEVLAAIIRNAERDPHKQIKTLSRVFQALRIEVNQELEVLKQALSDGVDCL 242 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQE 298 G + V+S+HSLEDR+VK FF +S + + + H V +T+K ++ ++ Sbjct: 243 DYHGRMAVISYHSLEDRIVKSFFVEKSKSDWGPKGVGMREPLHKGVLGLVTRKPLIADEK 302 Query: 299 DVAFNRRSRSAKLRAGM 315 ++ N R+RSAKLR Sbjct: 303 EIQENPRARSAKLRVVE 319 >gi|330718673|ref|ZP_08313273.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc fallax KCTC 3537] Length = 317 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 157/312 (50%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 +H VLL + IALL+ P + +DAT G GG++ K + + D+D A+ Sbjct: 1 MNFEHTTVLLHEAIALLDINPEGIYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIHY 60 Query: 74 GQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D + L F L + V+G+V+DLGVSS+Q D G RGFS+ Sbjct: 61 NKAQYADEITAGKLILVHQNFRNLTHVLHQDGITSVNGIVYDLGVSSVQFDDGQRGFSYN 120 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM +A +VN+ DL R+L GE++ A IA I + R+ +T Sbjct: 121 YDAELDMRMDQRQALTAKIIVNEWPFNDLLRVLSRYGEDRFAKSIARKIEQYREKQLIET 180 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + ++ HPA R+FQALR+ VN+E+ L L A L G + Sbjct: 181 TFELVDIIKDAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQAIDLLGINGKIS 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRR 305 V++F SLEDRLVK+ F + + V ++ +K ++P+Q+++A N R Sbjct: 241 VITFQSLEDRLVKQMFREKVSLPELPAGLPLLPEQIEVDYRLSNRKPILPSQQEIAHNHR 300 Query: 306 SRSAKLRAGMRT 317 + SAKLR R Sbjct: 301 AESAKLRGIERI 312 >gi|119717295|ref|YP_924260.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614] gi|262824666|sp|A1SL88|RSMH_NOCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119537956|gb|ABL82573.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614] Length = 319 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 176/309 (56%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLL++V+ALL P G V++DAT G GG++ + + V+ +DRDP A++ Sbjct: 6 HVPVLLDRVVALLAPPLEREGSVLVDATLGLGGHTEAVLTRFDLARVVGIDRDPEALALA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++F+ A + +L D + VD V+FDLGVSSMQ+D +RGF++ + Sbjct: 66 GRRLAPFGDRFTGVHAVYDELPDVLARLGLDAVDAVLFDLGVSSMQLDVRERGFAYAEDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G +A+DV+N DL RIL GEE+ A +IA A+V+ R PF + Sbjct: 126 PLDMRMDGSTGPTAADVLNTYAAADLARILREYGEERFARKIAAAVVRERAKEPFTRSGR 185 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ + + HPA R+FQALR+ VN+E+ L + + +A A+ GG ++V S Sbjct: 186 LVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAIPAAIDAIGVGGRVVVES 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ F + S + H + +T+ E++A N R+ S Sbjct: 246 YHSLEDRLVKQAFVAASRLDVPEDLPFVPAGHEPALRLVTRGAEKAGPEEIALNPRAASV 305 Query: 310 KLRAGMRTV 318 +LRA RT Sbjct: 306 RLRAIERTS 314 >gi|254994991|ref|ZP_05277181.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Mississippi] Length = 291 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 173/304 (56%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V VDGVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S F I KK ++PT E++ N RSRS KLRA Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEIKNNPRSRSGKLRAI 287 Query: 315 MRTV 318 R Sbjct: 288 ARVE 291 >gi|56416788|ref|YP_153862.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. St. Maries] gi|68565444|sp|Q5PAS3|RSMH_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56388020|gb|AAV86607.1| S-adenosyl-methyltransferase [Anaplasma marginale str. St. Maries] Length = 291 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 173/304 (56%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V VDGVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLETAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S F I KK ++PT E+V N RSRS KLRA Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287 Query: 315 MRTV 318 R Sbjct: 288 ARVE 291 >gi|116491168|ref|YP_810712.1| SAM-dependent methyltransferase for cell envelope biogenesis [Oenococcus oeni PSU-1] gi|290890684|ref|ZP_06553754.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429] gi|122276650|sp|Q04ES5|RSMH_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116091893|gb|ABJ57047.1| SAM-dependent methyltransferase for cell envelope biogenesis [Oenococcus oeni PSU-1] gi|290479659|gb|EFD88313.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429] Length = 314 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV V L + + L + +DAT G GG++ K +V + D+D A+ ++ Sbjct: 7 HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66 Query: 78 --MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + SL + F L + + +DG+VFDLGVSS Q D RGFS++ Sbjct: 67 FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + A +VN KDL I+ GEEK AS IA I+KRR+ P TT++L Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I++ + + + HPA ++FQA+RI VN+E+ L + L+ A + L +GG + V++F Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNSGGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK FF + K + P F+ +TK ++P+ E++ N R+ SA Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPLIPSVEEIEENHRAHSA 306 Query: 310 KLRAGMR 316 KLR + Sbjct: 307 KLRVLEK 313 >gi|156741091|ref|YP_001431220.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM 13941] gi|262826161|sp|A7NIA2|RSMH_ROSCS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156232419|gb|ABU57202.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM 13941] Length = 312 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 22/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + +A L P PG +D T G GG++ + + ++ +D DP A++ Sbjct: 23 HTPVLLTETLAGLQPHPGGWYIDGTVGGGGHAAAILEATAPDGRLLGIDCDPAALAAAAA 82 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ +L + +F ++ V GV+ DLGVSS Q+D +RGFSFQ S PL Sbjct: 83 RLAPYGERVTLVRGSFREIGRLAHKAGFVQVQGVLLDLGVSSYQLDTPERGFSFQASAPL 142 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ ++A+++VN +DL ++ EE+ + RIA AIV+ RQ P TT +L+ Sbjct: 143 DMRLDPDAPMTAANLVNDLPERDLADLIFRYSEERGSRRIARAIVEARQRRPITTTDELA 202 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + + RIHPATR+FQALRI VN+E+ L L + L GG + +++FHS Sbjct: 203 EIVSRAL-GGRRGRIHPATRTFQALRIAVNDELTSLDAALPQIVELLVVGGRMAIITFHS 261 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F + A + IT+K V + E+ N RSRSAKLR Sbjct: 262 LEDRIVKQFMRA--------------EAQAGHLRLITRKPVEASSEEQRINPRSRSAKLR 307 Query: 313 AGMR 316 R Sbjct: 308 VAER 311 >gi|116750882|ref|YP_847569.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans MPOB] gi|171460803|sp|A0LNY2|RSMH_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116699946|gb|ABK19134.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans MPOB] Length = 319 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 178/307 (57%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+PV+LE+ + LL G V +D T G GGYS + + ++ +D D A+ Sbjct: 8 EHIPVMLEQALELLACRRGGVYVDGTVGGGGYSEAILRASAPDGILLGVDWDAEAIGRAA 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + L +A F++L + +P VDG+V DLGVS+ QID RGFSF K GP Sbjct: 68 GRLSAYGRRAILTKAGFAELPEVLPRHGFAQVDGIVLDLGVSAFQIDDAARGFSFTKDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+D+VN KDL ++ LGEE+ + RIA A+V+RR+ PFQ T +L Sbjct: 128 LDMRMDPGLPQTAADMVNTLPEKDLADLIFRLGEERWSRRIARAVVERRRERPFQRTLEL 187 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + TV +++ RIHPATR+F ALR+ VN E+E L + L A LK GG L VVSF Sbjct: 188 ADTVAATVPATRDSRRIHPATRTFLALRLAVNQELESLERFLSGALDLLKTGGRLCVVSF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + R ++ + + +T+K V P + + N RSRSA Sbjct: 248 HSLEDRMVKGQFKEWAKSCRCPREAVLCRCEGRPLVRLLTRKAVRPDEREKERNPRSRSA 307 Query: 310 KLRAGMR 316 +LRA + Sbjct: 308 RLRAVEK 314 >gi|254372569|ref|ZP_04988058.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570296|gb|EDN35950.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3549] Length = 305 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q +T Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSISTTLE 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFH Sbjct: 179 LAELIRAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSRS Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296 Query: 309 AKLRAGMR 316 A LR + Sbjct: 297 AILRVVEK 304 >gi|118497204|ref|YP_898254.1| S-adenosylmethionine-dependent methyltransferase [Francisella tularensis subsp. novicida U112] gi|254374028|ref|ZP_04989510.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548] gi|263447525|sp|A0Q5I5|RSMH_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118423110|gb|ABK89500.1| S-adenosylmethionine-dependent methyltransferase [Francisella novicida U112] gi|151571748|gb|EDN37402.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548] gi|328676676|gb|AEB27546.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida Fx1] Length = 305 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q +T Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLE 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFH Sbjct: 179 LAELIRAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSRS Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296 Query: 309 AKLRAGMR 316 A LR + Sbjct: 297 AILRVVEK 304 >gi|328881795|emb|CCA55034.1| rRNA small subunit methyltransferase H [Streptomyces venezuelae ATCC 10712] Length = 318 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + +L P PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + + VDGV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPYGERATLVHAVYDELPEVLDRLGLATVDGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYAPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++++ + K +PA R+FQALRI VN E++ + + + +A KA+ GG ++V+S Sbjct: 186 LVELIRESLPQAAKRTGGNPAKRTFQALRIEVNRELDSVEKAIPAAVKAIGVGGRVVVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK+ FA+ + + + + +T+ +PT+E+VA NRR+ A Sbjct: 246 YQSLEDRIVKQVFAAGAATTAPPGLPVVPEKYQPRLKLLTRGAELPTEEEVAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAERIRE 315 >gi|305664541|ref|YP_003860828.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170] gi|88708558|gb|EAR00794.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170] Length = 297 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 15/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC-- 73 H PVLL++ + L+ V +D TFG GG+S+ K ++A D+D A+ Sbjct: 2 YHNPVLLKESVEGLDVKKDGVYVDVTFGGGGHSKEILKRLGPKGRLLAFDQDEDALDNKL 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 G E E F + Q + + VDG++ D GVSS Q D +RGFS + L Sbjct: 62 GDERFTLINENFRYIR----QFLKFYGIRKVDGILADFGVSSHQFDKAERGFSTRFDADL 117 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA DVVN DL ++L G+ + A+ +A+ I+ R+ AP +T+ L Sbjct: 118 DMRMSKKNSVSAYDVVNSYEFNDLRKVLFQYGDLRNANAMANKIITSREEAPIKTSAQLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + K ++I + +QA+RI VN EI+ + + L + L GG L V+S+HS Sbjct: 178 EVLRQFLPKHKEHKI--LAQIYQAIRIEVNQEIQVIKELLEQVPELLNLGGRLSVISYHS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + + + P + + ++VP++E+ A N R+RSAKLR Sbjct: 236 LEDRLVKRFIRAGLFEGEPEKDFYGNIDVP--LKKV-GGLIVPSREETALNNRARSAKLR 292 Query: 313 AGMRT 317 R Sbjct: 293 IAERI 297 >gi|302335888|ref|YP_003801095.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084] gi|301319728|gb|ADK68215.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084] Length = 323 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 170/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV++++VIA L+P PG+ + D T G G++ + + +D+D A+ Sbjct: 7 HVPVMIDEVIAELDPRPGETVCDCTLGGAGHTLEMARRIQPDGLSLGIDQDDMALDAASA 66 Query: 77 TMRDYKEQFSLF--QATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + F+ L D + GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 67 RFERELPTARRRFLKGNFASLDDLLVQAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 126 Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++V N N DL RIL + G+E+ A+RIA IV+ R+ AP +TT Sbjct: 127 PLDMRMGPGDNTLTAAEVTNSYNEADLARILRVYGDERNATRIARQIVRTREKAPIETTL 186 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + + + HPA ++FQALRI VN+E++ L QGLR+A + GG + V+ Sbjct: 187 QLVEVIKAAIPAAGRRHGGHPARKTFQALRIEVNHELDALDQGLRAAVRWANTGGRICVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK F S + + + H + T++ +V + +VA N R+R Sbjct: 247 SYHSLEDRIVKHVFTELSQGCVCPPDLPVCACGHVPIVDVRTRRPLVASDAEVARNPRAR 306 Query: 308 SAKLRAGMR 316 SA +R ++ Sbjct: 307 SALMRVAVK 315 >gi|325299150|ref|YP_004259067.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides salanitronis DSM 18170] gi|324318703|gb|ADY36594.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides salanitronis DSM 18170] Length = 305 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 159/311 (51%), Gaps = 17/311 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+PVLL + + +N + +D T G GG+SR + GS + D+D A Sbjct: 5 TKTYHIPVLLHESVDGMNLHENGIYVDVTLGGGGHSREILRRMDKGSRLFGFDQDEDA-- 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +F+ ++ F L++++ D ++ DLGVSS +D RGFSF+ Sbjct: 63 ---ERNAPADTRFTFVRSNFRYLRNFLRYYGVEQADAILADLGVSSHHLDDASRGFSFRF 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ ++A+DVVN + L I + GE K + R+A +VK R P T Sbjct: 120 DAPLDMRMNKRAKLTAADVVNTYDESRLADIFYLYGEMKNSRRLASDLVKARAQKPVALT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL +++ Y K + FQALRI VN+E++ L + L +A LK GG L V+ Sbjct: 180 GDLIGIVKP--YCPKEREKKELAKIFQALRIEVNHEMDALKEMLEAAVDVLKPGGRLAVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + A + + P K +VP +E++ N RSRS Sbjct: 238 TYHSLEDRMVKNMMKAGNVEGKAEQDFYGNFRSP---LRTVGKPIVPGEEEIGRNPRSRS 294 Query: 309 AKLRAGMRTVE 319 AKLR + + Sbjct: 295 AKLRIAEKVKD 305 >gi|325925694|ref|ZP_08187072.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118] gi|325543910|gb|EGD15315.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118] Length = 347 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 172/308 (55%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +G SA+ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELIVNPRARS 307 Query: 309 AKLRAGMR 316 A LR + Sbjct: 308 AVLRVAEK 315 >gi|329907257|ref|ZP_08274578.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium IMCC9480] gi|327547063|gb|EGF31946.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium IMCC9480] Length = 316 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 164/305 (53%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H VLLE+ + L + LD TFG GG+SR G +IA D+DP A++ Sbjct: 7 HRTVLLEEAVEALALQGARTDGIYLDGTFGRGGHSRRILSALGAGGRLIAFDKDPQAIAS 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E + AT VDGV+ DLG+SS Q+D RGFSF+ GPL Sbjct: 67 AGEIADPRFDIVHDSFATLDLALSARGVGLVDGVLLDLGISSPQVDDAARGFSFRADGPL 126 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G+SA++ + +++ +++ GEE+ A +IA AI R P +T+ L+ Sbjct: 127 DMRMDTTRGLSAAEWLATETEQNIEKVIRNYGEERFAFQIAKAIAASRTIEPISSTRQLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ +TV ++ PATR+FQA+RI++N E+EEL GL+ A L G L+V+SFHS Sbjct: 187 QIVARTV-KTREKGKDPATRTFQAIRIYINQELEELEIGLQQAYARLAPHGRLVVISFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F AS++ R + P + K P+ E+VA N RSRSA + Sbjct: 246 LEDRIVKRFMASKAHVEQPDRRLPIRAVDLPQPEMILISKA-KPSTEEVAGNPRSRSAVM 304 Query: 312 RAGMR 316 R R Sbjct: 305 RVAQR 309 >gi|194364373|ref|YP_002026983.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia R551-3] gi|262826731|sp|B4SJW8|RSMH_STRM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194347177|gb|ACF50300.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia R551-3] Length = 322 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 119/314 (37%), Positives = 179/314 (57%), Gaps = 8/314 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H+PVL +V+ L LD TFG GG++R ++ +D+DP Sbjct: 12 VSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPE 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ + + S+F+ +F+QL + +G+DGV+FDLGVSS Q+D +RGFSF Sbjct: 72 AIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFG 130 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM G SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF Sbjct: 131 KDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFSR 190 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ LI +V ++IHPATRSFQA+RI +N E+ +L GL +A + LK GG L + Sbjct: 191 TAELAELI-ASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAI 249 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK++ + A R + + I + T E++A N R+R Sbjct: 250 ISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRAR 308 Query: 308 SAKLRAGMRTVERS 321 SA LR + + Sbjct: 309 SAVLRVAQKREADA 322 >gi|307731080|ref|YP_003908304.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003] gi|307585615|gb|ADN59013.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003] Length = 313 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ + L V +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRRVLEKLGEAGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L+ + ++G++ V + DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 IA---DPRFAIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + + + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--IFASDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|290961148|ref|YP_003492330.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22] gi|260650674|emb|CBG73790.1| putative SAM-dependent methyltransferase [Streptomyces scabiei 87.22] Length = 318 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 183/315 (58%), Gaps = 10/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + +L PA PG V++D T G GG+S + ++ALDRD A Sbjct: 2 SNSRHVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTRFPEARLVALDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ +L A + +L + + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSGERLAPFGERATLVHAVYDELPEVLDRLGLPRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + GI A++V+N +L RIL GEEKQA RI AIV+ R PF Sbjct: 122 AQDAPLDMRMDQTTGIGAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ ++ + K +PA R+FQALRI VN E+ L + + +A KAL GG + Sbjct: 182 NSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVKALAVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E+VA NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAAVTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRR 301 Query: 306 SRSAKLRAGMRTVER 320 + A+LR R E Sbjct: 302 AAPARLRGAERVREH 316 >gi|222475152|ref|YP_002563568.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str. Florida] gi|255003134|ref|ZP_05278098.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Puerto Rico] gi|255004260|ref|ZP_05279061.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Virginia] gi|254813206|sp|B9KIK0|RSMH_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222419289|gb|ACM49312.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str. Florida] Length = 291 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 173/304 (56%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V VDGVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S F I KK ++PT E+V N RSRS KLRA Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287 Query: 315 MRTV 318 R Sbjct: 288 ARVE 291 >gi|21230192|ref|NP_636109.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188993033|ref|YP_001905043.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. B100] gi|24212033|sp|Q8PCK7|RSMH_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504525|sp|B0RVB2|RSMH_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21111730|gb|AAM40033.1| cell division protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734793|emb|CAP53003.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv. campestris] Length = 342 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 172/308 (55%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ + T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVAEHTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++A N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDSELAVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|126665254|ref|ZP_01736237.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17] gi|126630624|gb|EBA01239.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17] Length = 325 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 178/311 (57%), Gaps = 9/311 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL+ + LL G +DATFG GG+SR + + ++ +D+DP A+ + Sbjct: 15 HRSVLLDSAVDLLLTDSGGRYVDATFGRGGHSRMILERLAENGALLGIDKDPQAIDEAR- 73 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ +F+ F +F+ L + V+GV+ DLGVSS Q+D RGFSF + GPL Sbjct: 74 TLAAADSRFNAFHGSFADLGQALEQAHWPQVEGVLMDLGVSSPQLDDASRGFSFMRQGPL 133 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA++ + A+ K + ++ GEE+ + RIA IV+RR AP TT +L+ Sbjct: 134 DMRMNPQQAPSAAEWLASADEKVIADVIFKYGEERFSRRIARLIVERRAEAPITTTLELA 193 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L K V + ++ HPATR+FQA+RIF+N E+E+L GL++A + L GG L+V+SFHS Sbjct: 194 ELAAKAVPKKEKHK-HPATRTFQAIRIFINRELEDLELGLKAAAEKLAPGGRLVVISFHS 252 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + + + A + + K ++V+ N R+RSA +R Sbjct: 253 LEDRLVKRFMRDLARGPQMPKGIPVTAAEESSAYRLIGKPSKAASDEVSDNVRARSAVMR 312 Query: 313 AGMRTVERSIE 323 R + + E Sbjct: 313 VLERRADIAQE 323 >gi|170696713|ref|ZP_02887828.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M] gi|170138376|gb|EDT06589.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M] Length = 317 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 181/323 (56%), Gaps = 20/323 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+SA+ + + H VLLE+ +A L V +D TFG GG+SR + +IA D Sbjct: 1 MASAMRNELQ-HRTVLLEEAVAALVTRADGVYVDGTFGRGGHSRLVLEKLGQAGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122 +DP A++ Q+ +F + +F+ L+ + ++G++ V + DLGVSS Q+D + Sbjct: 60 KDPLAIATAQQI---GDPRFGIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPE 116 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + +VA N R+RSA +R R Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316 >gi|89256825|ref|YP_514187.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica LVS] gi|115315211|ref|YP_763934.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|167009864|ref|ZP_02274795.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|169656696|ref|YP_001429056.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368107|ref|ZP_04984127.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|254369709|ref|ZP_04985719.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290953521|ref|ZP_06558142.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica URFT1] gi|295313213|ref|ZP_06803872.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica URFT1] gi|122324792|sp|Q0BKT7|RSMH_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122500397|sp|Q2A265|RSMH_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447878|sp|A7NDP7|RSMH_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89144656|emb|CAJ79980.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130110|gb|ABI83297.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253917|gb|EBA53011.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|157122668|gb|EDO66797.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|164551764|gb|ABU62100.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica FTNF002-00] Length = 305 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q +TT + Sbjct: 119 LDMRMDVSKGITASQALEELSVYDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|226953729|ref|ZP_03824193.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC 27244] gi|294651784|ref|ZP_06729082.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226835517|gb|EEH67900.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC 27244] gi|292822341|gb|EFF81246.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 307 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 165/310 (53%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + L V +DATFG GG+++ + V A D+DP A+ Sbjct: 3 HISVLLHETVDGVLAGRDTGVYVDATFGRGGHTKLLLSKLDPNARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ +Q + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 Q-LEQEDSRFKIIHASFADIQAELAKIGIIEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + + L I+ GEE+ + RIA AI TT L Sbjct: 122 LDMRMDNSQGLTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKLA---GEITTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A + LK G L V+SFH Sbjct: 179 AEIVKVAHPKWEKHK-HPATRTFQAIRIAINKELDDIEIFLPQAVELLKPTGQLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S M + + +++ + ++ +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDHGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEKK 305 >gi|78065113|ref|YP_367882.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. 383] gi|88909190|sp|Q39JX8|RSMH_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77965858|gb|ABB07238.1| methyltransferase [Burkholderia sp. 383] Length = 313 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|289663644|ref|ZP_06485225.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 352 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 176/308 (57%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 307 Query: 309 AKLRAGMR 316 A LR + Sbjct: 308 AVLRVAEK 315 >gi|254246426|ref|ZP_04939747.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184] gi|124871202|gb|EAY62918.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184] Length = 319 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 113/322 (35%), Positives = 171/322 (53%), Gaps = 18/322 (5%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 M+ +G+ H VLL++ + L P V +D TFG GG+SR+ +I Sbjct: 1 MTET--PAMGNELRHRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLI 58 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 A D+DP A+ Q A+ + V GV+ DLGVSS Q+D Sbjct: 59 AFDKDPRAIETAQGIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPA 118 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR Sbjct: 119 RGFSFRADGPLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRA 178 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P TT +L+ ++ V ++ PATR+FQA+RI VN E+ +L L +A Sbjct: 179 ESDRLGPLDTTGELAQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALS 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I++ P Sbjct: 238 LLEQGGRLVVISFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFP 295 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 ++ +VA N R+RSA +R R Sbjct: 296 SEAEVAANPRARSAVMRIAERV 317 >gi|83720235|ref|YP_441658.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] gi|167580465|ref|ZP_02373339.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis TXDOH] gi|167618573|ref|ZP_02387204.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis Bt4] gi|257137827|ref|ZP_05586089.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] gi|123537607|sp|Q2SZJ1|RSMH_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83654060|gb|ABC38123.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] Length = 313 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSDAGRLIAFDKDPRAIETASG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D +RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + + + + P+ +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|297161278|gb|ADI10990.1| S-adenosyl-methyltransferase MraW [Streptomyces bingchenggensis BCW-1] Length = 320 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 178/319 (55%), Gaps = 10/319 (3%) Query: 15 HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 + HVPV+L++ + +L P PG V++D T G GG+S + + ++ALDRDP Sbjct: 2 SSNALHVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRTFPEARLVALDRDPA 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + Y ++ +L A + +L + + V G++FDLGVSSMQ+D +RGF+ Sbjct: 62 ALELSGARLAPYGDRATLVHAVYDELPEVLARLGIPRVQGILFDLGVSSMQLDEAERGFA 121 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM + GISA++V+N +L RIL GEEK A +I A+V+ R PF Sbjct: 122 YAQDAPLDMRMDQTTGISAAEVLNTYPPGELVRILRTYGEEKFARKIVDAVVRERAKEPF 181 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A AL GG Sbjct: 182 HNSARLVELIRAALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVAALAVGGR 241 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + V+S+HSLEDRLVK + + + + + +T+ +PT+E++A NR Sbjct: 242 IAVLSYHSLEDRLVKHVLGAGAETTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENR 301 Query: 305 RSRSAKLRAGMRTVERSIE 323 R+ A+LR R E Sbjct: 302 RAAPARLRGAERIREEVAP 320 >gi|58584368|ref|YP_197941.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|68565413|sp|Q5GTH5|RSMH_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58418684|gb|AAW70699.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 333 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 125/339 (36%), Positives = 184/339 (54%), Gaps = 52/339 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PVLL++++ L+P G + +DATFGAGGYS++ + V A+DRD + ++ Sbjct: 3 HIPVLLKEMLLQLSPQNGGIYVDATFGAGGYSKAILESADCKVYAIDRDKTVIKFYEDLN 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDG-------------------------------- 106 Y + LF FS ++ + ++ Sbjct: 63 IKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQKKNIWISASSTGV 122 Query: 107 --------VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLT 157 VVFD+GVSSMQ+D GDRGFSF GPLDMRM S + AS VN +++ Sbjct: 123 TPSNTVDGVVFDIGVSSMQLDDGDRGFSFLHDGPLDMRMDNSSHTNASTFVNALREEEIA 182 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 + G E+ + RIA AIV R+ +TT +L+++++ V+ K ++I PATR+FQA+ Sbjct: 183 NTIYNYGGERHSRRIARAIVNARKKKTIKTTFELANIVRSVVFRGK-SKIDPATRTFQAI 241 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277 RI+VN+E+ EL +G+++A + L G LIVV+FHSLEDR+VK FF S R + Sbjct: 242 RIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFFKSL----CEPRSIDC 297 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VF + KK++ + E+V N RSRSAKLRA R Sbjct: 298 -----KVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQR 331 >gi|110598571|ref|ZP_01386839.1| methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110339805|gb|EAT58312.1| methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 329 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 173/318 (54%), Gaps = 19/318 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71 HVPVL ++++A L P V +D T G GG+S + + +I +D+D A+ Sbjct: 7 HVPVLADEIVAFLVQKP-GVYVDGTLGGGGHSLAILRALEKAGYLESSLLIGIDQDDAAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG--------VVFDLGVSSMQIDCGDR 123 +ET+R+++ L + F ++ + + ++ DLGVSS QID +R Sbjct: 66 RKAEETLREFRTNSVLVKGNFEEISGVIQRVCSERERPRKVSGILLDLGVSSFQIDSAER 125 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ ++GPLDMRM SG SA+D+VN + ++L +I GEE ++ I+ AIV RQ Sbjct: 126 GFSYLRNGPLDMRMDSSGQRSAADIVNTCDERELAQIFYRYGEEPRSRAISRAIVGYRQK 185 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +T + + I + + + +N I +R FQALRI VN E++ L + L ++L+ Sbjct: 186 HGPISTTEELAGIIRAIAYGGDNVIKTLSRVFQALRIEVNRELDVLREALCDGIESLEDH 245 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+S+HSLEDR+VK FA + + + + + + +T+K ++ + + A Sbjct: 246 GRMAVISYHSLEDRIVKTVFADSAREDWGPKGVGLREPLKRGAIRLVTRKPLIASSGETA 305 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RSAKLR + E Sbjct: 306 SNSRARSAKLRVIEKNPE 323 >gi|303258244|ref|ZP_07344251.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium 1_1_47] gi|331001080|ref|ZP_08324711.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis YIT 11859] gi|302858997|gb|EFL82081.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium 1_1_47] gi|329569385|gb|EGG51163.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis YIT 11859] Length = 322 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 174/322 (54%), Gaps = 16/322 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H PVL E+ LL P V +D TFG GG+SR + +IA DRD Sbjct: 1 MQAEVLVHRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 AV + +F + A F+ +++ + V G+ D+GVSS QID +RGFS Sbjct: 61 AVKAAAQI---QDPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFS 117 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184 F+ GPLDMRM S G +A++ + +A+ ++ ++ LGEE+ A + A AI K R + Sbjct: 118 FRFDGPLDMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPI 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T Q + K++ HPATR FQA+RI VN E+E+L + L SA L GG+ Sbjct: 178 LRTKQLADLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGV 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGK--VMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVA 301 L V+SFHSLEDR+VKKFF + + + R ++PS +F + ++P++++ Sbjct: 238 LAVISFHSLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVR--ILPSEKECE 295 Query: 302 FNRRSRSAKLRAGMRTVERSIE 323 N R+RS+ LR RT E Sbjct: 296 ENPRARSSVLRGASRTDAPWPE 317 >gi|255994327|ref|ZP_05427462.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989] gi|255993040|gb|EEU03129.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989] Length = 311 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 165/311 (53%), Gaps = 8/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PV+L + I LN +D T G GG+ K +I +D+D A+ Sbjct: 1 MEFKHSPVMLHECIEALNIKEDGTYIDCTLGGGGHFTEIAKRLSEDGRLIGIDKDADAID 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK 129 + + + + + ++ F +++ G+DG ++ DLGVSS Q+D RGFS++ Sbjct: 61 AYRRRNVNTRCKVDIVKSDFKDIREVAAKTGIDGADGILMDLGVSSYQLDKASRGFSYKN 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +A VVN+ + ++LTR++ +EK A+RIA AIV+ R+ A ++T Sbjct: 121 DAPLDMRMDREQKFTAKTVVNEYSKEELTRVIREYSDEKWAARIAAAIVREREEAEIEST 180 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 LS +I++ + ++ HPA R+FQA+RI VN E+ L + L+ A+ L G L V Sbjct: 181 ARLSEIIKEAIPAATRRTGPHPAKRTFQAIRIEVNGELGMLEKTLKDAKAILNKNGRLAV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VKK+ + + + + K++ P+ +++ N R+R Sbjct: 241 ISFHSLEDRIVKKWIQDELHPCICPKDIPVCACNRRSDIITVGKIICPSVDELDRNPRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR R Sbjct: 301 SAKLRVIERVA 311 >gi|239618274|ref|YP_002941596.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1] gi|263456220|sp|C5CGS3|RSMH_KOSOT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239507105|gb|ACR80592.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1] Length = 298 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 166/307 (54%), Gaps = 26/307 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H V++++ + L P V +D T G GG++++ + VI LD D ++ ++ Sbjct: 9 HRSVMVQETLHYLRPTYNGVYVDGTLGEGGHTKAIIEATSGKCKVIGLDIDEEVLAIAEQ 68 Query: 77 TMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++KE F++ F + + + VDG + D+GVS+ Q+ RGFS++ PL Sbjct: 69 NLKEFKENVELFNVSYVDFDLVLESLAVDKVDGFLLDIGVSTYQLKAKGRGFSYEIDEPL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS SG ++A+DVVN K+L RI+ GEEK+ +R K + P QTT L Sbjct: 129 DMRMSLSGSVTAADVVNSYPEKELARIIFEYGEEKRYAR--RIARKIVERRPIQTTIQLV 186 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+ + + H ATR+FQA+RI VN E++ L L LK GG ++++SF Sbjct: 187 EAIKAALPPQERFRRKRHYATRTFQAIRIEVNGELKGLRTALEKFPNYLKPGGRIVIISF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK FF + G + +T+K VVP+ E+V+ N R+RSAK Sbjct: 247 HSLEDRTVKHFFREQDGV---------------TLKILTRKPVVPSVEEVSENPRARSAK 291 Query: 311 LRAGMRT 317 LRA R Sbjct: 292 LRAAERI 298 >gi|186477429|ref|YP_001858899.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815] gi|263446931|sp|B2JHG8|RSMH_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|184193888|gb|ACC71853.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815] Length = 317 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 22/322 (6%) Query: 13 IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 + +G+ H VLLE+ + L + +D TFG GG+SR+ +IA D+ Sbjct: 1 MAPAMGNELQHRTVLLEEAVNALVTRVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 DP A++ Q+ +F + +F+ L+D + ++ V GV+ DLGVSS Q D +R Sbjct: 61 DPLAIATAQQ---VADPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPER 117 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM G SA+D + +A V+++T ++ GEE+ A +IA A+V RR Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRAE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSL 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296 L+ GG L+V+SFHSLEDR+VK+F + S R + + + + + V + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQTHSSAPAVDRRLPIRAVDLPSPPLKLLGR--VFAS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318 E+VA N R+RSA +R R Sbjct: 295 DEEVAANPRARSAVMRVAERIA 316 >gi|289671027|ref|ZP_06492102.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 352 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 176/308 (57%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAAAVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDAELNVNPRARS 307 Query: 309 AKLRAGMR 316 A LR + Sbjct: 308 AVLRVAEK 315 >gi|217425690|ref|ZP_03457180.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576] gi|217391278|gb|EEC31310.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576] Length = 313 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|187932019|ref|YP_001892004.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. mediasiatica FSC147] gi|263447507|sp|B2SDL2|RSMH_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187712928|gb|ACD31225.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. mediasiatica FSC147] Length = 305 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q +TT + Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|53720643|ref|YP_109629.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei K96243] gi|167817538|ref|ZP_02449218.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 91] gi|115311582|sp|Q63QI9|RSMH_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52211057|emb|CAH37045.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei K96243] Length = 313 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|119505128|ref|ZP_01627204.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119459110|gb|EAW40209.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 307 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 168/311 (54%), Gaps = 12/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGS---NVIALDRDP 68 G H VLLE+ + L G V +D TFG GG+S + ++ S ++A D+DP Sbjct: 1 MSGMHQAVLLEEAVEALMAGAGGTGSEVYVDGTFGRGGHSAAILRVLSDGQRLVAFDKDP 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ + + FS +F L+ G+ GV+ DLGVSS Q+D G RGFSFQ Sbjct: 61 EAMESAR-LLSSENPAFSFLHDSFGNLERAGS--GLAGVLLDLGVSSPQLDDGSRGFSFQ 117 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G +A++ +N A+ DL R+L GEEK A RI A+VKRR PF+ Sbjct: 118 QQGPLDMRMDNSKGETAAEFINSASEADLRRVLWDFGEEKFARRIVSALVKRRMVEPFER 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+DL++++ + ++ HPATR+FQALRI VN E+ +L L L GG L+V Sbjct: 178 TEDLAAVVAAANPAWEKHK-HPATRTFQALRIHVNRELADLDILLGKVIDLLAVGGRLVV 236 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR VK F + R + + + K + +++A N R+R Sbjct: 237 ISFHSLEDRRVKTFMRREARGRELPRGVPIRDDERGERLRLLGKPRRASDDELAANPRAR 296 Query: 308 SAKLRAGMRTV 318 SA +R R Sbjct: 297 SAIMRVAERIA 307 >gi|91785301|ref|YP_560507.1| S-adenosyl-methyltransferase MraW [Burkholderia xenovorans LB400] gi|122970134|sp|Q13TY4|RSMH_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91689255|gb|ABE32455.1| S-adenosyl-methyltransferase, cell division cytoplasmic protein, MraW [Burkholderia xenovorans LB400] Length = 317 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 114/322 (35%), Positives = 176/322 (54%), Gaps = 22/322 (6%) Query: 13 IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 + +G+ H VLLE+ + L V +D TFG GG+SR + +IA D+ Sbjct: 1 MAPAMGNELQHRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 DP A++ Q+ +F + +F+ L+ + ++ V GV+ DLGVSS Q+D +R Sbjct: 61 DPLAIATAQQI---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPER 117 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSL 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFAS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318 +VA N R+RSA +R R Sbjct: 295 DAEVAANPRARSAVMRVAERIA 316 >gi|116618594|ref|YP_818965.1| SAM-dependent methyltransferase for cell envelope biogenesis [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271206|sp|Q03W30|RSMH_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116097441|gb|ABJ62592.1| SAM-dependent methyltransferase for cell envelope biogenesis [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 312 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 163/308 (52%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + IALL+ P +DAT G GG++ K + + D+D A+ E Sbjct: 4 EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNAE 63 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + F L + D VDG+V+DLGVSS+Q D G RGFS++ Sbjct: 64 QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVDGIVYDLGVSSVQFDDGQRGFSYKYDA 123 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +A +VN+ +L R+L GE++ +IA I + R++AP TT + Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA RI VN+E+ L L A + L G + V++ Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F +S + A ++ +T+K + P+ E++A N R+ S Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYELLTRKPISPSTEEMAINHRAES 303 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 304 AKLRGIRR 311 >gi|62260134|gb|AAX77882.1| unknown protein [synthetic construct] Length = 340 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 169/313 (53%), Gaps = 14/313 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAV 71 H + H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+ Sbjct: 22 KHMLEMHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAI 81 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 S +E + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF Sbjct: 82 SYARENFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSF 139 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 +GPLDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q Sbjct: 140 THNGPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSI 199 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + + K + +PATR FQALRI+VNNE+++L L + +K+GG + Sbjct: 200 RKTLELAELILAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIA 258 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N Sbjct: 259 AISFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQN 317 Query: 304 RRSRSAKLRAGMR 316 RSRSA LR + Sbjct: 318 VRSRSAILRVVEK 330 >gi|149198205|ref|ZP_01875252.1| putative S-adenosylmethionine-dependent methyltransferase [Lentisphaera araneosa HTCC2155] gi|149138807|gb|EDM27213.1| putative S-adenosylmethionine-dependent methyltransferase [Lentisphaera araneosa HTCC2155] Length = 311 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 8/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PVL E+VI L P G +D T G GG+S G ++ LD D A+ E Sbjct: 6 HIPVLAEQVIDGLRPQNGGKFIDCTLGGGGHSSMILSSGPDVKLLGLDCDDNALRAASER 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++F + F L D VDG++ D+GVSS +D RGF+++++GPLD Sbjct: 66 LSSFGDRFKSKRLNFRDLAKLKDDAEWNQVDGILMDIGVSSHHLDEASRGFTYRENGPLD 125 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++AS ++N+ +++ LT+I GE K+A R+A A+V R+ F T+ L+ Sbjct: 126 MRMDRRLKVTASMILNKESLEGLTKIFRDYGEMKEAYRLAKAVVADREKELFTHTEQLAG 185 Query: 194 LIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + + +PA T +FQALRI VN+E+ L G+++A LK GG L V+SFHS Sbjct: 186 LADRVCVNRNRRKRNPAPTLAFQALRIAVNDELGALESGMKAAFDLLKPGGRLAVISFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+FF ++ I A + IT+K + ++A N R+ AKL Sbjct: 246 LEDRMVKEFFKDKATSCTCPPDLPICVCGSKAQMKIITRKPLTAESGELAENTRAACAKL 305 Query: 312 RAGMRT 317 R + Sbjct: 306 RVAEKI 311 >gi|209519087|ref|ZP_03267893.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160] gi|209500459|gb|EEA00509.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160] Length = 317 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 22/322 (6%) Query: 13 IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 + +G+ H VLL + + L +D TFG GG+SR + +IA D+ Sbjct: 1 MAPAMGNELQHRTVLLNEAVDALVTRTDGTYVDGTFGRGGHSRLVLERLGEAGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 DP A++ Q+ +F++ +F+ L+ + ++ V GV+ DLGVSS Q+D +R Sbjct: 61 DPLAIATAQKIA---DSRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPER 117 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P +T +L+ ++ V + PATR+FQA+RI VN E+ EL L +A Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALSL 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFAS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318 +VA N R+RSA +R R Sbjct: 295 DAEVADNPRARSAVMRVAERIA 316 >gi|119961336|ref|YP_947462.1| S-adenosyl-methyltransferase MraW [Arthrobacter aurescens TC1] gi|119948195|gb|ABM07106.1| putative S-adenosyl-methyltransferase mraW [Arthrobacter aurescens TC1] Length = 378 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 15/324 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NV 61 A T HVPVL ++ I LL P V +DAT G GG+S + + ++ Sbjct: 52 AAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHL 111 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 + +DRD A++ + + ++ L A + +++D + D V G++ DLGVSS+Q+ Sbjct: 112 VGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQL 171 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ PLDMRM G +A+DVVN + +L RI+ GEEK A RIA+ IV Sbjct: 172 DERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIV 231 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A Sbjct: 232 NARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAV 291 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 A GG ++V+S+HSLED++VK F + S + + H ++ITK VPT Sbjct: 292 AATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPT 351 Query: 297 QEDVAFNRRSRSAKLRAGMRTVER 320 ++A N R+ SA+LRA R +R Sbjct: 352 AAEIAENPRAASARLRAVERIKQR 375 >gi|167740320|ref|ZP_02413094.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 14] gi|226199616|ref|ZP_03795172.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pakistan 9] gi|225928362|gb|EEH24393.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pakistan 9] Length = 313 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|51246756|ref|YP_066640.1| hypothetical protein DP2904 [Desulfotalea psychrophila LSv54] gi|54036176|sp|Q6AJ47|RSMH_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50877793|emb|CAG37633.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 295 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 25/306 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L PG + +D T G GG++ + + V+A + D A+ +E Sbjct: 7 HISVLLEETMEFLCLQPGGIYVDGTMGLGGHTSAILERTAPDGRVVAFEWDENAIKASRE 66 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ +L + F+++ +DG++ D+G+SS+Q+D G RGFSFQ+ L Sbjct: 67 RLAPYGERLTLVRRNFAEIGVGLTEAGISHIDGLLIDIGLSSLQLDTGTRGFSFQRDDDL 126 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A+ ++ + L + GEE+QA IA AIV R+ P QTT+ L Sbjct: 127 DMRMDERGEMTAATIIATCTEEQLADLFYCYGEERQARPIAAAIVAARKLEPIQTTKQLV 186 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + +IH AT+ FQALRI VN E+E L++ + A + LK G ++SFH Sbjct: 187 RVVARAIPKRFHPKKIHVATKVFQALRIAVNTELENLSKIIDDAGEFLKPGSRFCIISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ F F+ IT K V +E++ N RSRSA L Sbjct: 247 SLEDRIVKRKFREN-----------------PNFKVITNKPVKAGEEELDRNYRSRSALL 289 Query: 312 RAGMRT 317 R + Sbjct: 290 RVAEKV 295 >gi|254191020|ref|ZP_04897526.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pasteur 52237] gi|157938694|gb|EDO94364.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pasteur 52237] Length = 313 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|254299374|ref|ZP_04966824.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e] gi|157808911|gb|EDO86081.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e] Length = 319 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 168/318 (52%), Gaps = 16/318 (5%) Query: 14 HHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 +G+ H VLL++ + L P V +D TFG GG+SR+ +IA D+D Sbjct: 4 TPAMGNEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKD 63 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + E A D V GV+ DLGVSS Q+D RGFSF Sbjct: 64 PRAIETAESIEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSF 123 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--- 183 + +GPLDMRM G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + Sbjct: 124 RANGPLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRL 183 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +T +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ G Sbjct: 184 GPLDSTGELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDV 300 G L+V+SFHSLEDR+VK+F + + R + ++ + + + + P +V Sbjct: 243 GRLVVISFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEV 300 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA +R R Sbjct: 301 AANPRARSAVMRIAERVA 318 >gi|76579862|gb|ABA49337.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b] Length = 413 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 168/318 (52%), Gaps = 16/318 (5%) Query: 14 HHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 +G+ H VLL++ + L P V +D TFG GG+SR+ +IA D+D Sbjct: 98 TPAMGNEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKD 157 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + E A D V GV+ DLGVSS Q+D RGFSF Sbjct: 158 PRAIETAESIEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSF 217 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--- 183 + +GPLDMRM G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + Sbjct: 218 RANGPLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRL 277 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +T +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ G Sbjct: 278 GPLDSTGELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQG 336 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDV 300 G L+V+SFHSLEDR+VK+F + + R + ++ + + + + P +V Sbjct: 337 GRLVVISFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEV 394 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA +R R Sbjct: 395 AANPRARSAVMRIAERVA 412 >gi|257458293|ref|ZP_05623442.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580] gi|257444320|gb|EEV19414.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580] Length = 315 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 158/305 (51%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H PVLL++ + LL P P +++D T G GG+S +F VI +D DP + + Sbjct: 5 HTPVLLQECLQLLAPETPDPLLIDGTLGEGGHSEAFLNRFPQLKVIGIDADPAIQAKAKV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + F D P + ++FDLG+S RGFSF PLD Sbjct: 65 RLAPFGNRVRFFLGWSDDFFDQYPQDNPAPSLILFDLGISLFHYTESKRGFSFGADEPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ ++A+D+VN + K L +L + EE+ + IA A+V R+ PF + LS Sbjct: 125 MRINPDESLTAADIVNTYSEKKLADVLYLYAEERFSRPIARAVVAEREKHPFTEARQLSE 184 Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + V ++ IHPAT++FQALRI VN+E++ L + L A L GG + V+SFHS Sbjct: 185 TVFHAVPARFRHGPIHPATKTFQALRIAVNSELDRLPRLLEKAFACLAEGGKMGVISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF + + M + +TKK V P+ E+ A N SRSA+L Sbjct: 245 LEDRIVKLFFRDLAKSCICPPEMPICTCGGMPRAALLTKKPVCPSAEETAANAPSRSARL 304 Query: 312 RAGMR 316 R + Sbjct: 305 RVIKK 309 >gi|329895271|ref|ZP_08270913.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088] gi|328922393|gb|EGG29736.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088] Length = 305 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 9/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLLE+ + L +D TFG GG++R+ + ++ V+ +D+DP A+ Q Sbjct: 1 MHESVLLEESLQGLVGPLSGRYVDGTFGRGGHTRALLALLNDDAAVLVMDKDPQAIEVAQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + S++ +F+ L D + GVDGV+ DLGVSS Q+D +RGFSFQ+ GP Sbjct: 61 A-LAAEDGRVSVYHGSFADLPDALRQLGWAGVDGVLLDLGVSSPQLDQDERGFSFQRQGP 119 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G + ++ + + DL +L GEE+ A RIA AIVK R +P TT L Sbjct: 120 LDMRMDNSSGQTVAEYLQGVSETDLISVLRDYGEERFARRIAAAIVKARADSPITTTLQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQALRI +N E+E+L L L G L V+SFH Sbjct: 180 AELVKAAHPRWEKHK-HPATRTFQALRIAINRELEDLDVLLDVVVDCLSPSGRLAVISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+F S R + ++ K + P++ +V N R+RSA L Sbjct: 239 SLEDRKVKQFMRKASQGPKVPRGVPVQGDTMRGPLALVGKAIKPSEREVQANVRARSAVL 298 Query: 312 RAGMR 316 R R Sbjct: 299 RIAER 303 >gi|84625268|ref|YP_452640.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575290|ref|YP_001912219.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369208|dbj|BAE70366.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519742|gb|ACD57687.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 7/310 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDTELNVNPRARS 307 Query: 309 AKLRAGMRTV 318 A LR + Sbjct: 308 AVLRVAEKLE 317 >gi|21241542|ref|NP_641124.1| S-adenosyl-methyltransferase MraW [Xanthomonas axonopodis pv. citri str. 306] gi|24212036|sp|Q8PPB5|RSMH_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21106893|gb|AAM35660.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306] Length = 342 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + A Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSG-AIKADDAELHVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|53726017|ref|YP_104102.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344] gi|67643637|ref|ZP_00442382.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4] gi|121598510|ref|YP_991829.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1] gi|124386348|ref|YP_001027322.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229] gi|126438415|ref|YP_001060543.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668] gi|126449153|ref|YP_001082741.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247] gi|162210064|ref|YP_334923.2| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b] gi|166998645|ref|ZP_02264503.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20] gi|167721351|ref|ZP_02404587.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei DM98] gi|254179030|ref|ZP_04885684.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399] gi|254202823|ref|ZP_04909186.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH] gi|254208165|ref|ZP_04914515.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU] gi|254259496|ref|ZP_04950550.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a] gi|254357631|ref|ZP_04973905.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280] gi|88909189|sp|Q3JND0|RSMH_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115311581|sp|Q62GR9|RSMH_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446914|sp|A3MR55|RSMH_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446917|sp|A2S5V3|RSMH_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446920|sp|A1V0S6|RSMH_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446928|sp|A3NDX2|RSMH_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52429440|gb|AAU50033.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344] gi|121227320|gb|ABM49838.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1] gi|124294368|gb|ABN03637.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229] gi|126217908|gb|ABN81414.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668] gi|126242023|gb|ABO05116.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247] gi|147747070|gb|EDK54147.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH] gi|147752059|gb|EDK59126.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU] gi|148026695|gb|EDK84780.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280] gi|160694944|gb|EDP84952.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399] gi|238525016|gb|EEP88446.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4] gi|243065324|gb|EES47510.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20] gi|254218185|gb|EET07569.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a] Length = 313 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|295677772|ref|YP_003606296.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002] gi|295437615|gb|ADG16785.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002] Length = 313 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 171/312 (54%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLNEAVDALVTRADGTYVDGTFGRGGHSRLVLERLGEAGRLIAFDKDPLAIATAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L+ + ++ V GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 IA---DPRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + V + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVADNPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|116688575|ref|YP_834198.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424] gi|170731875|ref|YP_001763822.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3] gi|263446896|sp|B1JUW4|RSMH_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446902|sp|A0K478|RSMH_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116646664|gb|ABK07305.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424] gi|169815117|gb|ACA89700.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3] Length = 313 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|187925450|ref|YP_001897092.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN] gi|263446934|sp|B2SYY3|RSMH_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187716644|gb|ACD17868.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN] Length = 317 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 114/322 (35%), Positives = 176/322 (54%), Gaps = 22/322 (6%) Query: 13 IHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 + +G+ H VLLE+ + L V +D TFG GG+SR + +IA D+ Sbjct: 1 MAPAMGNELQHRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLAESGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 DP A++ Q+ +F + +F+ L+ + ++ V GV+ DLG+SS QID +R Sbjct: 61 DPLAIATAQQIA---DPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPER 117 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 118 GFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 178 SDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSL 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFAS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318 +VA N R+RSA +R R Sbjct: 295 DAEVAANPRARSAVMRVAERIA 316 >gi|149927124|ref|ZP_01915381.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105] gi|149824063|gb|EDM83284.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105] Length = 323 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 171/311 (54%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + +H+PVLL+ + L P + LD TFG GG+SR+ + ++ALDRDP AV Sbjct: 2 STDEHIPVLLQPTVDALLHTPDGLYLDCTFGRGGHSRALLEKLSAQGQLVALDRDPQAVQ 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E A D + VDGV+ D+GVSS QID +RGFSF++ GP Sbjct: 62 AMGEIKDSRFRGVRSAFADLESALDSLGIDQVDGVLMDIGVSSPQIDQAERGFSFRRDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA+D + +A+ +++ ++ GEE+ A +IA AIV RR P TT DL Sbjct: 122 LDMRMDPQTGESAADFLARADAREIKEVIKNYGEERFAVQIATAIVARRTERPITTTLDL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + PATR+FQALRI VN E+ +L QGL +A K L+ GG L V+SFH Sbjct: 182 AQIVAGAVRTREPGQ-DPATRTFQALRIHVNQELAQLEQGLTAAFKRLRVGGRLAVISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+ K+F + +P + + + + + PT+E+ N RSRS Sbjct: 241 SLEDRITKQFIEKLANPKSQQDARLRKLPLPEPTPLMKKLDR--IKPTKEECELNPRSRS 298 Query: 309 AKLRAGMRTVE 319 + LR + E Sbjct: 299 SVLRVAEKLAE 309 >gi|86134334|ref|ZP_01052916.1| MraW methylase family [Polaribacter sp. MED152] gi|85821197|gb|EAQ42344.1| MraW methylase family [Polaribacter sp. MED152] Length = 298 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 15/304 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H VLL++ + LN + +D TFG GG+S+ K + A D+DP A++ Sbjct: 1 MSYHNAVLLQESVDGLNIKEDGIYVDVTFGGGGHSKEILKRLGKNGRLFAFDQDPDAINN 60 Query: 74 G--QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E E F S+ + K VDG++ DLGVSS Q D +RGFS + G Sbjct: 61 AIDDERFVLIPENFRYI----SRFLRFHRVKKVDGILADLGVSSHQFDEAERGFSIRFDG 116 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ ISA +++N + + L IL + GE + + ++A IV R+++P +T+ Sbjct: 117 DLDMRMNQKSKISAKEIINNYSEEKLAEILFLYGELRNSRKLARTIVHERKNSPIETSFQ 176 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +++ + ++ ++I + FQA+RI VN E+E L + L+ L G L V+S+ Sbjct: 177 LKEVLKAFLPNAREHKI--LAQIFQAIRIEVNEELEVLKEFLQQVPNLLNDEGRLSVISY 234 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK+F + + + + ++ P + + K++VP +E++ N R+RSAK Sbjct: 235 HSLEDRLVKRFIRTGLFEGEPEKDVFGNSNEP--LKKV-GKLIVPPKEEIKINNRARSAK 291 Query: 311 LRAG 314 LR Sbjct: 292 LRLA 295 >gi|312140150|ref|YP_004007486.1| sam dependent methyltransferase mraw [Rhodococcus equi 103S] gi|311889489|emb|CBH48806.1| SAM dependent methyltransferase MraW [Rhodococcus equi 103S] Length = 390 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 173/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL + LL PA G V++DAT G GG+S F + ++I LDRDP Sbjct: 71 HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 130 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + Y ++ + + + + P V ++FDLGVSSMQ+D DR Sbjct: 131 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 190 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ + GI+A++V+N + +L RIL GEE+ A RIA IV+RRQ Sbjct: 191 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 250 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ T+ ++ HPA R+FQALR+ VN E++ L + + AL Sbjct: 251 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 310 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ A R+ + F+ +T+ ++ ++ Sbjct: 311 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 370 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N R+ +LRA R ++ Sbjct: 371 DNPRAAPVRLRAAERIARKA 390 >gi|325676969|ref|ZP_08156641.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Rhodococcus equi ATCC 33707] gi|325552269|gb|EGD21959.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Rhodococcus equi ATCC 33707] Length = 334 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 173/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL + LL PA G V++DAT G GG+S F + ++I LDRDP Sbjct: 15 HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + Y ++ + + + + P V ++FDLGVSSMQ+D DR Sbjct: 75 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 134 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ + GI+A++V+N + +L RIL GEE+ A RIA IV+RRQ Sbjct: 135 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 194 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ T+ ++ HPA R+FQALR+ VN E++ L + + AL Sbjct: 195 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ A R+ + F+ +T+ ++ ++ Sbjct: 255 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 314 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N R+ +LRA R ++ Sbjct: 315 DNPRAAPVRLRAAERIARKA 334 >gi|221213285|ref|ZP_03586260.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1] gi|221166737|gb|EED99208.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1] Length = 313 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQS 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 MADARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I + P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|254797245|ref|YP_003082087.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str. Illinois] gi|254590494|gb|ACT69856.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str. Illinois] Length = 296 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 123/300 (41%), Positives = 173/300 (57%), Gaps = 18/300 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H PVLL + + L P G V +DATFGAGGY+R+ V A+DRD Q Sbjct: 13 HKPVLLSEALKFLAPKNGAVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVKRFFQLIE 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ + A F ++ + + VDG+VFDLGVS+MQ+ DRGFSF GPLDMRM Sbjct: 73 SDFPKRTTFINANFVDIEALLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132 Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + I +A +VN + I+ GEE+ + +IAHAIV R+ TT L+ ++ + Sbjct: 133 RNTILTAETIVNSYTEVKIASIIYQFGEERMSRKIAHAIVDARRKKRITTTSSLAEIV-R 191 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + + +I PAT++FQALRIFVN+E+ L GLR+A LK GG +VVSFHSLEDR+ Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFVNDELGALECGLRTALTMLKVGGRAVVVSFHSLEDRI 251 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK F S G F +TKK+VVP++++V N SRSA++R + Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296 >gi|206561807|ref|YP_002232572.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315] gi|263447024|sp|B4E6K0|RSMH_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|198037849|emb|CAR53793.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315] Length = 313 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ + +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLAPAARLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IKDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|150026102|ref|YP_001296928.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum JIP02/86] gi|263447480|sp|A6H1A2|RSMH_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149772643|emb|CAL44126.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum JIP02/86] Length = 291 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L++ + LN P V +D TFG GG+S+ + D+D A Sbjct: 1 MLKETVDGLNIKPDGVYVDVTFGGGGHSKEILSRLGPEGKLFGFDQDEDAWENA-----L 55 Query: 81 YKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 E+F+L Q F ++ + K VDG++ DLGVSS Q D +RGFS + LDMRM Sbjct: 56 PDERFTLIQENFRYIKRFLRFNGIKKVDGILADLGVSSHQFDVPERGFSTRFDAELDMRM 115 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S +A ++VN+ + +L RI GE A IA AI++ R+ T+DL ++ Sbjct: 116 SKKNDLTAFNIVNEYDETNLRRIFAEYGELGNALAIARAIIEAREKEKIVNTEDLKQVLA 175 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + +K ++I + +Q++RI VN E++ L + L + + L GG L V+S+HSLEDR Sbjct: 176 RFLPNNKAHKI--LAQIYQSIRIEVNQEMDVLKEFLEQSLEVLDQGGRLSVISYHSLEDR 233 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 LVK+F + + + P F+ I K+++P+ +++ N R+RSAKLR + Sbjct: 234 LVKRFMKNGLFEGEPEKDFFGRFEVP--FKLI-GKMIIPSNQEIKINNRARSAKLRIAEK 290 >gi|29832656|ref|NP_827290.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces avermitilis MA-4680] gi|42559459|sp|Q82AE4|RSMH_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29609776|dbj|BAC73825.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces avermitilis MA-4680] Length = 318 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 10/316 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + +L PA PG V++D T G GG+S + ++ALDRD A Sbjct: 2 SQSRHVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTQFPEARLVALDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSGERLAPFGDRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + GISA++V+N ++ RIL GEEKQA RI AIV+ R+ PF Sbjct: 122 AQDAPLDMRMDQTTGISAAEVLNTYPPGEIVRILRAYGEEKQAKRIVSAIVREREKEPFS 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ ++ + K +PA R+FQALRI VN E+ L + + +A KAL GG + Sbjct: 182 NSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 242 AVLSYHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301 Query: 306 SRSAKLRAGMRTVERS 321 + A+LR R E + Sbjct: 302 AAPARLRGAQRIREDA 317 >gi|254423474|ref|ZP_05037192.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335] gi|196190963|gb|EDX85927.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335] Length = 293 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 163/311 (52%), Gaps = 24/311 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDR 66 M + HVPVL E+V+A L G LDAT G GG+S K ++ALD+ Sbjct: 1 MPEDVTAQPFFHVPVLSEQVLAGLQIEDGGRYLDATVGGGGHSELILKAARNVELVALDQ 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A+S ++ + ++++ + FS+ + + DG++ D+GVSS Q+D RGFS Sbjct: 61 DLQALSAAKKRLEVWRDRTTFIHTNFSRYE--PGGRKFDGILADIGVSSTQLDQAQRGFS 118 Query: 127 FQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F++ PLDMRM + + ++VN + K + + GEE+ + RIA IV+ + Sbjct: 119 FRQEAPLDMRMDSTQELMAKEIVNHWDEKAIADTIYEYGEERLSRRIARRIVE--KRPFS 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ + +++ RIHPATR+FQALRI VN E++ L L A L GG L Sbjct: 177 TTTELAWEVAGAYPAKARHGRIHPATRTFQALRIAVNGELDVLKTLLAKAPDWLNPGGRL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR+VK + + ITKK +V T ++V N R Sbjct: 237 AIISFHSLEDRIVKYAYRGDE-----------------RLEIITKKPLVATDQEVKENAR 279 Query: 306 SRSAKLRAGMR 316 SRSAKLR R Sbjct: 280 SRSAKLRIAER 290 >gi|126454576|ref|YP_001067794.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a] gi|134280340|ref|ZP_01767051.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305] gi|167847424|ref|ZP_02472932.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei B7210] gi|167896013|ref|ZP_02483415.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 7894] gi|167904399|ref|ZP_02491604.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei NCTC 13177] gi|167920627|ref|ZP_02507718.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei BCC215] gi|242314397|ref|ZP_04813413.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b] gi|254180538|ref|ZP_04887136.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655] gi|254199129|ref|ZP_04905544.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13] gi|263446924|sp|A3NZM3|RSMH_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126228218|gb|ABN91758.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a] gi|134248347|gb|EBA48430.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305] gi|169656959|gb|EDS88356.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13] gi|184211077|gb|EDU08120.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655] gi|242137636|gb|EES24038.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b] Length = 313 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|237813927|ref|YP_002898378.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei MSHR346] gi|237506330|gb|ACQ98648.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei MSHR346] Length = 313 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADRPSPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|263447893|sp|A1R5F0|RSMH_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 15/324 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NV 61 A T HVPVL ++ I LL P V +DAT G GG+S + + ++ Sbjct: 6 AAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHL 65 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 + +DRD A++ + + ++ L A + +++D + D V G++ DLGVSS+Q+ Sbjct: 66 VGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQL 125 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ PLDMRM G +A+DVVN + +L RI+ GEEK A RIA+ IV Sbjct: 126 DERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIV 185 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A Sbjct: 186 NARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAV 245 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 A GG ++V+S+HSLED++VK F + S + + H ++ITK VPT Sbjct: 246 AATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPT 305 Query: 297 QEDVAFNRRSRSAKLRAGMRTVER 320 ++A N R+ SA+LRA R +R Sbjct: 306 AAEIAENPRAASARLRAVERIKQR 329 >gi|330815435|ref|YP_004359140.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3] gi|327367828|gb|AEA59184.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3] Length = 313 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 176/312 (56%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR G +IA D+DP A+ Sbjct: 7 HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRLVLDRLAEGGRLIAFDKDPLAIETAS- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ L + ++ V GV+ DLGVSS QID +RGFSF+ +GPL Sbjct: 66 --RVGDTRFSIVHDSFASLGGALAERGVGRVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM G SA+D + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V ++ PATR+FQA+RI VN E+ +L L SA +L+ GG L+V+ Sbjct: 184 GELAQIVGHAV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLESALSSLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + + +K P + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKLLGRKF--PGEAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|289209369|ref|YP_003461435.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix] gi|288945000|gb|ADC72699.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix] Length = 309 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 118/313 (37%), Positives = 166/313 (53%), Gaps = 12/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + T+ H+PVL + V+ L +D TFG GG+SR+ G +++A+DRDP Sbjct: 1 MTETVA-HIPVLRDAVLEGLAVRADGFYVDGTFGRGGHSRAILDRLGAGGSLLAMDRDPE 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + +F FS + D PD+ DGV DLGVSS Q+D +RGF Sbjct: 60 --AAAAASSFADDPRFVFEPGPFSTMADTLRRRFPDRAPDGVFLDLGVSSPQLDTPERGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SFQ GPLDMRM G SA+D + +A ++ ++ GEE+ + R+A AIV R AP Sbjct: 118 SFQHDGPLDMRMDPTQGESAADWLARAEQDEIADVIYHYGEERHSRRVARAIVAARADAP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ ++++ V + + HPATR+FQALRI VN E+EEL Q L + +AL G Sbjct: 178 ITRTAQLAEIVRRAVPGREPGK-HPATRTFQALRIHVNRELEELEQWLETIPEALHTGAR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+SFHSLEDR+VK+ R + P K V E+ N Sbjct: 237 MVVISFHSLEDRMVKQALRGPRPDTRLPRGLPVMPETPERPWRPIGKPVRADAEEQRRNP 296 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR G RT Sbjct: 297 RARSAVLRVGERT 309 >gi|118587349|ref|ZP_01544775.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163] gi|118432173|gb|EAV38913.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163] Length = 314 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 162/307 (52%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV V L + + L + +DAT G GG++ K +V + D+D A+ ++ Sbjct: 7 HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66 Query: 78 --MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + SL + F L + + +DG+VFDLGVSS Q D RGFS++ Sbjct: 67 FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + A +VN KDL I+ GEEK AS IA I+KRR+ P TT++L Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I++ + + + HPA ++FQA+RI VN+E+ L + L+ A + L GG + V++F Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNRGGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK FF + K + P F+ +TK ++P+ E++ N R+ SA Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPIIPSVEEIEENHRAHSA 306 Query: 310 KLRAGMR 316 K R + Sbjct: 307 KFRVLEK 313 >gi|217979581|ref|YP_002363728.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2] gi|263456483|sp|B8ETL4|RSMH_METSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217504957|gb|ACK52366.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2] Length = 346 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 148/324 (45%), Positives = 195/324 (60%), Gaps = 8/324 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQE 76 H+PVL ++++ L P + LDATFGAGGYSR G+ V+A+DRDP A++ G Sbjct: 17 ARHIPVLRDEILELAAPQADGLYLDATFGAGGYSRGLLATQGARVLAIDRDPGAIAAGAG 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L +A FS L D +FD+GVSSMQ+D RGFSF+ GPL Sbjct: 77 LIAESNGRLTLVEARFSDLAAVAERLGLGAFDAALFDIGVSSMQLDEAARGFSFRFDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM SG SA+D+VN A+ + L IL GEE+ + RIA AIV R APF++T L++ Sbjct: 137 DMRMQQSGPSAADIVNDADEEALADILYYFGEERASRRIAKAIVMDRAKAPFRSTAALAA 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + V K IHPATRSFQALRI VN+E+ EL GL AE LK GG L VV+FHSL Sbjct: 197 MIAR-VCPGKPGDIHPATRSFQALRIAVNDELGELVAGLAGAEARLKPGGRLAVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPA--VFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK FFA RSG+ A +P P F ++ V P+ ++A N R+RSAKL Sbjct: 256 EDRIVKLFFAGRSGRGEAPSRRLPGEPIPPPPTFAVSGRQPVTPSAAEIAANPRARSAKL 315 Query: 312 RAGMRTVERSIED-DSFVHLPRLP 334 R G+RT + + L LP Sbjct: 316 RHGVRTSAPARAPGRDLMALAALP 339 >gi|262370681|ref|ZP_06064006.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter johnsonii SH046] gi|262314481|gb|EEY95523.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter johnsonii SH046] Length = 307 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 156/308 (50%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + L + +D TFG GG++R + V D+DP A+ Sbjct: 3 HISVLLHETVDALVADRNTGIFIDGTFGRGGHTRLLLSKLDENARVYGFDKDPQALETA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + A+F+ L+ + VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 62 AILEQEDPRFKIIHASFADLKHELEVRGIGLVDGVMADLGVSSPQLDQAERGFSFMKDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A+ + + L I+ GEE+ + RIA AI +TT L Sbjct: 122 LDMRMDNSKGPTAAQWLVNIEEEALANIIFQYGEERYSRRIAKAIKAA---GLIETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + N+ H ATR+FQA+RI +N E+E++ L A + LK G L V+SFH Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEVFLPQAVEVLKPNGRLAVISFH 237 Query: 252 SLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S + M + +++ V + +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLEEDMGWGMPQQRPDTRRLKKVSR--VKASDAEVKANPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R Sbjct: 296 LRVAERLA 303 >gi|84495974|ref|ZP_00994828.1| putative S-adenosylmethionine-dependent methyltransferase [Janibacter sp. HTCC2649] gi|84382742|gb|EAP98623.1| putative S-adenosylmethionine-dependent methyltransferase [Janibacter sp. HTCC2649] Length = 350 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVL ++++ LL PA PG V++D T G GG++ +F + + VI +DRD A++ Sbjct: 35 HVPVLRDRIVELLAPALTEPGSVLVDGTLGMGGHAEAFLEACPEATVIGIDRDEEALALA 94 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F A + ++ D V D + V V+FDLGVSS+Q+D DRGF++ + Sbjct: 95 GERLARFGDRFRGVHAVYDEIGDVVKDLGLRDVQAVLFDLGVSSLQLDEADRGFAYAQDA 154 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SGI+A++V+N DL RIL GEE+ A RI ++V+ R+ PF + Sbjct: 155 PLDMRMDQGSGITAAEVLNTYAPADLLRILRDFGEERFAKRIVSSVVRERELEPFTRSAR 214 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ V S+ HPA R+FQALRI VN+E+ + + + L GG + V+S Sbjct: 215 LVELLRAAVPAASQRTGGHPAKRTFQALRIEVNDELGAWQRAVLGSIDVLAVGGRIAVLS 274 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K+ + + + H A + +T+ P++ + + N RS SA Sbjct: 275 YHSLEDRITKRALVAGATSSTPPGIPVELPEHAAYLRLLTRGAEEPSESEQSTNPRSASA 334 Query: 310 KLRAGMRT 317 +LR RT Sbjct: 335 RLRVAERT 342 >gi|241664315|ref|YP_002982675.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D] gi|262825232|sp|C6BEJ1|RSMH_RALP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240866342|gb|ACS64003.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D] Length = 319 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VLL++ + L + +D TFG GG+SR + G ++A D+ Sbjct: 1 MTTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A++ A +Q D + V GV+ DLG+SS QID G+RGFS Sbjct: 61 DPAAITEAGTVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERGFS 120 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----Q 181 F+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 121 FRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGD 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL++A L+ Sbjct: 181 RGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFDRLEQ 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVP 295 GG L+V+SFHSLEDR+VK+F + + + + + + + V P Sbjct: 240 GGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR--VKP 297 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 ++ +V+ N R+RSA +R R Sbjct: 298 SEAEVSANPRARSAIMRVAER 318 >gi|50365212|ref|YP_053637.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma florum L1] gi|54036182|sp|Q6F170|RSMH_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50363768|gb|AAT75753.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma florum L1] Length = 308 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 155/309 (50%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H+PVLL++ I LN + +D T G G+S K + ++D+D A+ G Sbjct: 1 MEKHIPVLLKESIEYLNIKENGIYVDCTLGRAGHSSEILKKLKDGKLFSIDQDETAILEG 60 Query: 75 QETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + F + + F S + VDG+++DLGVSS Q D +RGFS++ G Sbjct: 61 TEKLTKISNNFKILEGNFVNISAMLAMQGIFEVDGILYDLGVSSPQFDVAERGFSYRFDG 120 Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + S +VN+ ++L +IL G+EK A IA I+ T + Sbjct: 121 PLDMRMDRANNSLTAHKIVNEYTQEELEQILWNYGDEKFARSIAKNII--LSRPINTTFE 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +S + + + HPA ++FQALRI VNNE+E L L + LK G ++V++ Sbjct: 179 LVSVIKKSLPAKILKQQKHPAKKTFQALRIRVNNEMETLESSLEQSLNLLKPKGRVVVIT 238 Query: 250 FHSLEDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLE+++VK F + + ++ F+ + KK + PT +V N RS Sbjct: 239 FHSLEEKVVKNIFKKYTLDEQQFYLSNLPYEIESSKDFKLLFKKPLKPTNTEVENNNRSH 298 Query: 308 SAKLRAGMR 316 SAKL + Sbjct: 299 SAKLWVIEK 307 >gi|115350509|ref|YP_772348.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD] gi|123322723|sp|Q0BIK9|RSMH_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115280497|gb|ABI86014.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD] Length = 313 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 166/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETAQR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +V N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|255322622|ref|ZP_05363766.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277] gi|255300183|gb|EET79456.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277] Length = 310 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 92/303 (30%), Positives = 157/303 (51%), Gaps = 6/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 HVPVLL +V+ VI+D T G GG+S + + N+IA D+D A+ Sbjct: 1 MNSPHVPVLLNEVLQAFEDIKSGVIVDCTLGYGGHSSAILEQNQNVNLIACDQDEEAIKF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E ++ + ++ +F++ FS++ V + G++ D+GVSS+Q+D +RGF + Sbjct: 61 SSERLKKFGQRAQIFKSKFSEILGKVEQSQIRGILADIGVSSLQLDKNERGFGLKSENLD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 + + SA D+VN + K+L RI GE ++ A I++ RQS ++ + L+ Sbjct: 121 MRMDAQAKFSAYDIVNFYSAKELERIFADYGELPSPAKFAAKIIEARQSGEIKSAERLAQ 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + + AT +FQA+RI VNNE+ EL L+S E + ++ ++SFHSL Sbjct: 181 IIG--LKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQSIEDSQIDECIVAIISFHSL 238 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK F + + + A+ + ++KK + P+ ++ N RS AK+ Sbjct: 239 EDRIVKNKFRQWAQSCICPPQALRCTCGGDNALGKIVSKKAITPSAAEIKANPRSSCAKM 298 Query: 312 RAG 314 R Sbjct: 299 RIF 301 >gi|308177867|ref|YP_003917273.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Arthrobacter arilaitensis Re117] gi|307745330|emb|CBT76302.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Arthrobacter arilaitensis Re117] Length = 330 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 182/322 (56%), Gaps = 15/322 (4%) Query: 15 HTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKM--GSNVIAL 64 HVPVLL++ + LL P +++D T G GG+S + + ++I L Sbjct: 9 PASERHVPVLLDRCVNLLAPGIERANAEGRRAIVVDCTLGMGGHSEAILQRFENLHLIGL 68 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 DRD A + ++++ L A + ++ D V D G+DGV+FDLGVSS+Q+D Sbjct: 69 DRDEQAHELAGARLAPFQDRIDLVHAVYDEIADVVEDLGFPGIDGVLFDLGVSSLQLDER 128 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF++ PLDMRM S G +A D+VN + +L RI+ GEEK A RI+ AIV+ R Sbjct: 129 ERGFAYSYDAPLDMRMDTSVGPTAEDLVNDLDRDELLRIIRQWGEEKFAGRISTAIVEAR 188 Query: 181 QSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + TT +L +I+ V + N HPA R+FQALRI VN E++ L + + +A AL Sbjct: 189 AKSRISTTAELVEVIRSVVPAAAARNHGHPAKRTFQALRIAVNEELDVLERAIPAAMGAL 248 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG ++V+S+HSLED++ K+ F S + H A ++ +TK P++ + Sbjct: 249 NIGGRVVVMSYHSLEDKITKRHFVQGSTSSAPPGFPVELEEHKAEYKVLTKGTEKPSEHE 308 Query: 300 VAFNRRSRSAKLRAGMRTVERS 321 +A N R+ SA+LRA R ++RS Sbjct: 309 IAENSRAASARLRAVERVLKRS 330 >gi|302036124|ref|YP_003796446.1| s-adenosyl-L-methionine-dependent methyltransferase mraW [Candidatus Nitrospira defluvii] gi|300604188|emb|CBK40520.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Candidatus Nitrospira defluvii] Length = 309 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 168/314 (53%), Gaps = 20/314 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 I H PVL+E+++ L PG V +D T G G + ++ +DRD Sbjct: 3 IDSARDSHEPVLVEEILFWLQCKPGGVYVDCTLGYAGLAARLLDRTAPDGILVGIDRDAA 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + +R+ + F L+ + VDGV+FDLGVSS Q+D +RGFS Sbjct: 63 ALAESRMRLREVAHRVHFRHGNFCDLKALIIGSGVSRVDGVIFDLGVSSPQLDRAERGFS 122 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F++ GPLDMRM G +A+D+V +L ++ LGEE+ + RIA AIV+ R Sbjct: 123 FREDGPLDMRMDQREGRTAADLVRDLPETELADLIYQLGEERYSRRIARAIVQARMQGVI 182 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L++++++ V ++ RIH ATR+FQALRI VN E++ L LR A L GG Sbjct: 183 ATTWQLAAVVERAVPASYRHGRIHCATRTFQALRIAVNRELDVLEPALRDAVDILAPGGR 242 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + VSFHSLEDR+VK F + + N A + +TKK V+ ++ + N Sbjct: 243 VCAVSFHSLEDRIVKHTFRALA------------NGPEASVRVLTKKPVIASENERNRNP 290 Query: 305 RSRSAKLRAGMRTV 318 RSRSAKLR R Sbjct: 291 RSRSAKLRVVERIS 304 >gi|309783013|ref|ZP_07677732.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA] gi|308918121|gb|EFP63799.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA] Length = 319 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VLLE+ + L + +D TFG GG+SR + G ++A D+ Sbjct: 1 MTTQASTALRHQTVLLEEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A++ A +Q D + V GV+ DLG+SS QID G RGFS Sbjct: 61 DPAAITEAGTVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGARGFS 120 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----Q 181 F+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 121 FRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGD 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL++A + L+ Sbjct: 181 RGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFERLEQ 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVP 295 GG L+V+SFHSLEDR+VK+F + + + + + + + V P Sbjct: 240 GGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPTPQLRLLGR--VKP 297 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 ++ +V+ N R+RSA +R R Sbjct: 298 SEAEVSANPRARSAIMRVAER 318 >gi|331005086|ref|ZP_08328490.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989] gi|330421141|gb|EGG95403.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989] Length = 314 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 170/315 (53%), Gaps = 10/315 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDP 68 + H VLL + + L +D TFG GG+SR + ++A+D+D Sbjct: 2 SQSLEQLSHQSVLLHESVDALITDVNGFYVDGTFGRGGHSREVLLRLSEDAQLMAVDKDE 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRG 124 A++ + D K +FS+ +FSQL ++ + V+G++ DLGVSS Q+D RG Sbjct: 62 QAIAEADKQFSDEK-RFSIRHGSFSQLNQWLVEIEKLGKVNGILLDLGVSSPQLDEAHRG 120 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF + GPLDMRM+ G +A++ +N A+ +D+ R+L GEE+ + RIA AIV RQ Sbjct: 121 FSFMQDGPLDMRMNRTKGETAAEWINSASQEDIARVLKEYGEERFSKRIARAIVDHRQEQ 180 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 PF TT +LS ++ + + + HPATR+FQA+RI +N+E+ +L L A AL GG Sbjct: 181 PFATTHELSKVVTEANPAWEKGK-HPATRAFQAIRIHINDELSDLDVILEQALAALAVGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V+SFHSLEDR VK+F + + + KV ++A N Sbjct: 240 RLVVISFHSLEDRRVKRFIRQQVQGDRLPMGVPVRDEQLNKRLRSLGKVTKAGASELAHN 299 Query: 304 RRSRSAKLRAGMRTV 318 R+RSA +R + Sbjct: 300 PRARSAVMRVAEKIA 314 >gi|323527438|ref|YP_004229591.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001] gi|323384440|gb|ADX56531.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001] Length = 313 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 164/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L V +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRLVLEKLSEAGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D +RGFSF+ GPLDMR Sbjct: 67 IADPRFGIVHESFASLRTAIAARGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P +T +L Sbjct: 127 MDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+SFH Sbjct: 187 AQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALALLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I + V + +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRVAERIA 312 >gi|300173578|ref|YP_003772744.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG 18811] gi|299887957|emb|CBL91925.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG 18811] Length = 313 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 T +HV VLL++ +ALLN P +DAT G GG++ K N + + D+D A+ Sbjct: 2 TEFEHVTVLLKEAVALLNVKPDGNYVDATLGGGGHTGEILKQLDNGILYSFDQDDTAIKY 61 Query: 74 GQE--TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +E + L F L + + + VDGV++DLGVSS+Q D G RGFS+ Sbjct: 62 NEEQYAAEIASGKLVLIHQNFRTLTEALAELGVTQVDGVLYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM +A ++N+ + D+ RIL GE++ +IA I R++ T Sbjct: 122 YDADLDMRMDQRQTLTAKTIINEWSFNDILRILSRYGEDRFPKQIARKIEHHRENGVINT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L + L GG + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQSLDLLAPGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLEDRLVK+ F ++ + A + +T+K ++PT ++ N R Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPTNDETQTNHR 301 Query: 306 SRSAKLRAGMR 316 S+SAKLR R Sbjct: 302 SQSAKLRGIER 312 >gi|163787483|ref|ZP_02181930.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium ALC-1] gi|159877371|gb|EDP71428.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium ALC-1] Length = 298 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 17/308 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H VLL + + L+ P V +D TFG GG+SR + A D+D A++ Sbjct: 1 MDYHNAVLLIETVDGLDIKPNGVYVDVTFGGGGHSREILSRLGPNGKLYAFDQDKDALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + E+F L F ++ ++ VDGV+ D GVSS Q D +RGFS + Sbjct: 61 TID-----DERFVLINENFRYIKRFLRFYGVKEVDGVLADFGVSSHQFDVAERGFSTRFE 115 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ ISA VVN + + + +L GE +Q+ +A IV R +T++ Sbjct: 116 ADLDMRMNQDSKISAYQVVNNYSEEQIKNVLLQYGELRQSPAMARVIVTERAREEIKTSE 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +++ + K N+ + +QA+RI VN EIE L + L + LK GG L +S Sbjct: 176 QLKKVLKPFLNHKKENK--VLAQIYQAIRIEVNQEIEVLKELLLQTPEILKEGGRLSFIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+F + + R M + P + + K+++P++ ++ N R+RSA Sbjct: 234 YHSLEDRLVKRFIRNGLFEGEPERDMFGNFEVP--LRKV-GKLIIPSRLEIKINNRARSA 290 Query: 310 KLRAGMRT 317 KLR + Sbjct: 291 KLRIAEKI 298 >gi|77166320|ref|YP_344845.1| methyltransferase [Nitrosococcus oceani ATCC 19707] gi|254435207|ref|ZP_05048714.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27] gi|88909205|sp|Q3J781|RSMH_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76884634|gb|ABA59315.1| methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088318|gb|EDZ65590.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27] Length = 315 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 176/313 (56%), Gaps = 13/313 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 ++ I H PVLL + I L + +D TFG GG++++ ++ +D+DP Sbjct: 3 NNEISSHQPVLLREAIQALAIRRDGLYIDGTFGRGGHAQAILAALSSEGRLLGVDKDPA- 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFS 126 + +F++ QA+ L V ++ ++GV+FDLGVSS Q++ +RGFS Sbjct: 62 AIAAGHALAQKDGRFTIVQASIGDLARVVSERGWLKRINGVLFDLGVSSPQLESAERGFS 121 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM+ + G SA++ + A K++ +L + GEE+ RIA AI++ R+ Sbjct: 122 FLRDGPLDMRMNPTVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQARELNSL 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L+ ++ K + + R+HPATRSFQA+RIF+N+E+EEL L A AL G L Sbjct: 182 TRTKQLAEVVAKAIPRWER-RMHPATRSFQAIRIFINHELEELRAALEQALAALAVKGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK+FF ++ + A + + K + P E++A N Sbjct: 241 AVISFHSLEDRIVKRFFREKARGEELPPDLPVMQKDFQQASLKVL-GKPIWPVPEEIAHN 299 Query: 304 RRSRSAKLRAGMR 316 R+RSA+LR + Sbjct: 300 PRARSARLRVAEK 312 >gi|169632239|ref|YP_001705975.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii SDF] gi|263433355|sp|B0VPF9|RSMH_ACIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169151031|emb|CAO99677.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii] Length = 307 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++ + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTHLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G++A++ + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERHSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLTEDSGWGMPQQQVDTRRLKKISR--VRVSEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|332881743|ref|ZP_08449391.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680382|gb|EGJ53331.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 302 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 HVPVLL++ + L P + D TFG GG+SR+ ++ D+D A + Sbjct: 3 EAVYHVPVLLKECVDGLVVNPAGIYADVTFGGGGHSRAIVSRLDAAGHLYGFDQDADAEA 62 Query: 73 CGQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F + Y + +DG++ DLGVSS D +RGFSF+ G Sbjct: 63 N---IVADGRFTFVRSNFRYLKNWMRYYGVEQLDGLLADLGVSSHHFDDAERGFSFRFDG 119 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ +A+DV+N + L I + GE K A ++A +VK R +TT++ Sbjct: 120 KLDMRMNQRARLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETTEE 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + + + FQALRI VN E++ L + L +A + L+ GG L+V+++ Sbjct: 180 FMEVVKPLFERDREKK--ELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVLTY 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK +G V R +++ KV+VP +E+ N RSRSAK Sbjct: 238 HSLEDRMVKNLVK--TGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRSAK 295 Query: 311 LRAGMR 316 LR + Sbjct: 296 LRIAEK 301 >gi|77414796|ref|ZP_00790918.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515] gi|77159158|gb|EAO70347.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515] Length = 298 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 154/296 (52%), Gaps = 10/296 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QFS 86 L+ P + +DAT G G+S ++ A D+D A+ ++ Y + Q + Sbjct: 2 LDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQVT 61 Query: 87 LFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGI 142 + F L + ++G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ + Sbjct: 62 FIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSL 121 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A DVVN + DL RI GE+K + +IA I + R P TT +L+ +I+ + Sbjct: 122 TAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSAK 181 Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQL 241 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F S + + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 242 FKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRI 297 >gi|56707815|ref|YP_169711.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis SCHU S4] gi|110670286|ref|YP_666843.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456886|ref|ZP_03665359.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370311|ref|ZP_04986316.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254874629|ref|ZP_05247339.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|68565439|sp|Q5NGY1|RSMH_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123169471|sp|Q14ID3|RSMH_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56604307|emb|CAG45328.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320619|emb|CAL08711.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568554|gb|EDN34208.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254840628|gb|EET19064.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158991|gb|ADA78382.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 305 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFH Sbjct: 179 LAELILAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSRS Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296 Query: 309 AKLRAGMR 316 A LR + Sbjct: 297 AILRVVEK 304 >gi|170700174|ref|ZP_02891192.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10] gi|172059541|ref|YP_001807193.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6] gi|263446887|sp|B1YSR6|RSMH_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170134906|gb|EDT03216.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10] gi|171992058|gb|ACB62977.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6] Length = 313 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +V N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|148657877|ref|YP_001278082.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1] gi|262826166|sp|A5UZS9|RSMH_ROSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148569987|gb|ABQ92132.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1] Length = 313 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 166/306 (54%), Gaps = 22/306 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL +V+A L P PG +D T G GG++ + + ++ +D DP A++ Sbjct: 23 HTPVLLAEVVAGLLPRPGGRYIDGTVGGGGHAAAILEASSPDGRLLGIDCDPAALAAAAA 82 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +L + +F ++ V+GVV DLGVSS Q+D +RGFSFQ PL Sbjct: 83 RLAPYGDRVTLVRGSFREIGQLAATSGFVQVEGVVLDLGVSSYQLDTPERGFSFQAHAPL 142 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ ++A+ +VN ++L ++ GEE+ + RIA AIV+ RQ P TT +L+ Sbjct: 143 DMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVEARQRKPVTTTDELA 202 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + + + RIHPATR+FQALRI VNNE+ L L L GG + +++FHS Sbjct: 203 AIVTRALGGQR-GRIHPATRTFQALRIAVNNELASLEAALPQIIDLLAPGGRMAIIAFHS 261 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + A IT+K V + E+ N RSRSA+LR Sbjct: 262 LEDRIVKHTLRA--------------EAQAGRLHIITRKPVEASIEEQRANPRSRSARLR 307 Query: 313 AGMRTV 318 R Sbjct: 308 VAERVS 313 >gi|296160551|ref|ZP_06843367.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1] gi|295889300|gb|EFG69102.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1] Length = 313 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 172/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ + L V +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ L+ + ++ V GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 I---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + V + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|76798783|ref|ZP_00780998.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21] gi|77405004|ref|ZP_00782105.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B] gi|77410569|ref|ZP_00786929.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111] gi|22533299|gb|AAM99192.1|AE014204_10 conserved hypothetical protein TIGR00006 [Streptococcus agalactiae 2603V/R] gi|76585867|gb|EAO62410.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21] gi|77163284|gb|EAO74235.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111] gi|77176443|gb|EAO79211.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B] Length = 298 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 10/296 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QFS 86 L+ P + +DAT G G+S ++ A D+D A+ ++ Y + Q + Sbjct: 2 LDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQVT 61 Query: 87 LFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGI 142 + F L + ++G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ + Sbjct: 62 FIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSL 121 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A DVVN + DL RI GE+K + +IA I + R TT +L+ +I+ + Sbjct: 122 TAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTELAEIIKSSKSAK 181 Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQL 241 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F S + + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 242 FKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRI 297 >gi|194335059|ref|YP_002016919.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM 271] gi|262824884|sp|B4S6R7|RSMH_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194312877|gb|ACF47272.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM 271] Length = 333 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 19/317 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69 G H+PV++ +V LL P + +D T G GG++ S +I +D+D F Sbjct: 5 GYHLPVMVSEVTDLLARRP-GIYIDGTLGGGGHAFSVMSALRRSGFENDSLLIGIDQDSF 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV--------PDKGVDGVVFDLGVSSMQIDCG 121 A+ +R + + L + FS++ + V G++ DLGVSS QID Sbjct: 64 ALEEAAGRLRPFASRVRLERGNFSEMAAIIERIRLREGCRLPVMGILLDLGVSSFQIDTP 123 Query: 122 DRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGFS+ + GPLDMRM G SA+D+VN A +L I+ GEEK++ IA AI R Sbjct: 124 DRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEEKKSRAIARAIKARV 183 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + + + ++V + +I +R FQALRI VN+E+ L L L Sbjct: 184 REKGDFRETAELAAVVRSVVAGHDRQIKSLSRVFQALRIAVNDELGVLESALEDGTACLA 243 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299 G + V+S+HSLEDR+VK+FF +S + + + A F+ +T+K VV + ++ Sbjct: 244 PSGRMGVMSYHSLEDRMVKRFFRDKSEDDWGPKGVGLREPLRSAGFKLVTRKSVVASDDE 303 Query: 300 VAFNRRSRSAKLRAGMR 316 V N R+RSA+LR + Sbjct: 304 VRINPRARSARLRVIEK 320 >gi|294664073|ref|ZP_06729474.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606158|gb|EFF49408.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + A Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSG-AIKADDAELHVNPRARS 307 Query: 309 AKLRAGMR 316 A LR + Sbjct: 308 AVLRVAEK 315 >gi|294627718|ref|ZP_06706300.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598070|gb|EFF42225.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 347 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 190 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + A Q ++ + ++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSG-AIKADDAELHVNPRARS 307 Query: 309 AKLRAGMR 316 A LR + Sbjct: 308 AVLRVAEK 315 >gi|29840135|ref|NP_829241.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC] gi|33301363|sp|Q823N6|RSMH_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29834483|gb|AAP05119.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC] Length = 297 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 160/305 (52%), Gaps = 20/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+ + ++ + + D T GAGG++ +F ++I DRD A+S +E Sbjct: 7 HIPVLVNECLSWFSDRNPRSFCDVTVGAGGHAEAFLSTYPSIISYDGSDRDATALSLARE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + + ++ L A+F L + DG++ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 67 RLEKFGDRVHLHHASFEDLAQDPKENVYDGILADLGVSSMQLDTLSRGFSFQGEDHDLDM 126 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM GI+AS+V+N ++L +I GEE +A+AIV R+ T +DL Sbjct: 127 RMDTSQGITASEVLNTLREEELGKIFREYGEEPHWKNVANAIVHFRRRKKIITVKDLKEA 186 Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + +IHP T FQALR++VN E +L L SA + L G L+++SF S Sbjct: 187 TARVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPKGRLVIISFCSS 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK FF + + +TKKVV+PT E++ N R RSAKLR Sbjct: 247 EDRPVKWFFREAEKSG--------------LGKILTKKVVMPTYEEIRRNPRCRSAKLRC 292 Query: 314 GMRTV 318 +T Sbjct: 293 FEKTS 297 >gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent methyltransferase MraW protein [Herbaspirillum seropedicae SmR1] gi|300072455|gb|ADJ61854.1| S-adenosyl-methionine-dependent methyltransferase MraW protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 170/316 (53%), Gaps = 13/316 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVI 62 M+ + H VLLE+ + L V LD TFG GG+SR+ +I Sbjct: 1 MNLQPVPELQ-HRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLI 59 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 A D+DP A++ Q+ E AT Q VDGV+ DLG+SS Q+D Sbjct: 60 AFDKDPLAIATAQKIADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAA 119 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM G+SA++ + A+ + + +++ GEE+ A +IA IV R Sbjct: 120 RGFSFRLDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRA 179 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +T+ L++L+ + V ++ PATR+FQA+RIFVN E+EEL GL A + Sbjct: 180 VEPISSTRQLAALVAQAV-KTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQ 238 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQED 299 G L+V+SFHSLEDR+VK+F AS++ R + + A + + + V+P+ + Sbjct: 239 HGRLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPR--VMPSAGE 296 Query: 300 VAFNRRSRSAKLRAGM 315 V N R+RSA +R Sbjct: 297 VEANPRARSAVMRGLE 312 >gi|294628857|ref|ZP_06707417.1| methylase MraW [Streptomyces sp. e14] gi|292832190|gb|EFF90539.1| methylase MraW [Streptomyces sp. e14] Length = 318 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + HVPV+L++ + LL P PG V++D T G GG+S + +I LDRD A Sbjct: 2 SDSRHVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ Sbjct: 62 LRLSGERLAPFGDRATLVHAVYDELPDVLDRLGIVRVQGVLFDLGVSSMQLDEADRGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + GISA++V+N +L RIL GEEKQA RI AIV+ R+ PF Sbjct: 122 AQDAPLDMRMDQTTGISAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFA 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI+ + + K +PA R+FQALRI VN E+ L + + +A KAL GG + Sbjct: 182 HSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVKALDVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+ SLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR Sbjct: 242 AVLSYQSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRR 301 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R Sbjct: 302 AAPARLRGVERVRA 315 >gi|195997843|ref|XP_002108790.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens] gi|190589566|gb|EDV29588.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens] Length = 378 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 132/344 (38%), Positives = 194/344 (56%), Gaps = 42/344 (12%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 H ++ H PVLL+ V+ LL PA G+ +DATFG GG++ + K + A+D DP A+ Sbjct: 25 HCSVLKHQPVLLDTVVKLLAPANGQSYIDATFGGGGHTSAILKAATDCQIYAIDTDPLAI 84 Query: 72 SCGQETM---RDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + ++ ++ ++ + Q F Q+ Q+ +P +DG++FDLG+SSMQID Sbjct: 85 ARAKQLASTTSNWIQRLKVVQCRFGQMENKLLAQEKLPPNSMDGIIFDLGMSSMQIDDPL 144 Query: 123 RGFSFQKSGPLDMRM---------SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 RGFSFQ SGPLDMRM I+A+ V+N + +DL +L GEE++A IA Sbjct: 145 RGFSFQSSGPLDMRMDATSDEIGKHQHRITAAHVINNIDKEDLADVLWNYGEERKARAIA 204 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 AI+K R+ P TT L +I + + K+ +IHPATR+FQA+RI +N+E+ +L QG Sbjct: 205 TAIIKARKKQPITTTDHLVDIIDRQFPYKYRKDGQIHPATRTFQAIRILINDELWQLVQG 264 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---------- 281 L + + LK GG LIV+SFHSLEDR+VKKFF R S+ Sbjct: 265 LNACKALLKNGGRLIVISFHSLEDRIVKKFFNGEDRPDFTSRSSPTSSKQYARLSEEGKS 324 Query: 282 ----------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + ++ I KK + P+ E++A N R+RSAKLR + Sbjct: 325 KIESKSIIKRNSPWKLICKKPIYPSPEEIAHNSRARSAKLRCAI 368 >gi|213961666|ref|ZP_03389932.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno] gi|213955455|gb|EEB66771.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno] Length = 304 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 17/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ H+PVLL++ + L P +D TFG GG+SR K + A D+ Sbjct: 1 MNDNSSYHIPVLLQQSVEGLAIKPNGTYVDVTFGGGGHSREILKHLGNEGRLFAFDQ--- 57 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 ++F+L Q F L+ Y+ VDGV+ D GVSS Q D +RGFS Sbjct: 58 --DTDAAANAIADDRFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ + +SA ++VN+ + +DL+R+ GE K A IA AI+ R P Sbjct: 116 TRFEGTLDMRMNQNATVSAKEIVNEYDEEDLSRLFFNYGELKNAKAIARAIINYRAQKPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 Q +L ++ + K N+ + +QA+RI VN E+E L L +K GG + Sbjct: 176 QLGSELQEAVKSFLPKFKENK--VLAQIYQAIRIEVNGEMEALESFLLQLPDVVKLGGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + ++ PT ++A N R Sbjct: 234 SLISYHSLEDRAVKRFIRDGQLEGTPEKDWFGNVSVP--FKKV-GGLITPTDSEIAMNNR 290 Query: 306 SRSAKLRAGMRTVE 319 +RSAKLR R Sbjct: 291 ARSAKLRIAERINA 304 >gi|171057205|ref|YP_001789554.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6] gi|263456313|sp|B1XY20|RSMH_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170774650|gb|ACB32789.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6] Length = 325 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L P V LD T+G GG+SR + +IA+DRDP A++ + Sbjct: 11 HRTVLLHEAVDALVQRPAGVYLDGTYGRGGHSRLILERLDPAGRLIAIDRDPEALANARS 70 Query: 77 -TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R +FS+ A F++ + + + +DG++ DLG+SS QID +RGFSF+ GP Sbjct: 71 GETRIDDPRFSIHHARFAEFESVLDEAGVGQLDGLLLDLGISSPQIDNPERGFSFRFDGP 130 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA++ + A + + ++ GEE+ A +A AIV RR+ Sbjct: 131 LDMRMDPTRGQSAAEFLASAPFERIKEVVRDYGEERFADAVAKAIVARREEGRPVQRTAE 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ PATR+FQALRI VN E+EE+ QGL A L GG L V++FH Sbjct: 191 LAALVAGAVKTRERGQDPATRTFQALRILVNAELEEVEQGLNRALARLAPGGRLAVIAFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F A + +V R M + P + +++ + + P + +VA N R+RSA L Sbjct: 251 SLEDRIVKTFIARHAREV-YDRRMPYATPAPLLMRAVAR--IKPGEAEVAANPRARSAIL 307 Query: 312 RAGMRTVER 320 R RT Sbjct: 308 RVAERTDVP 316 >gi|77408183|ref|ZP_00784928.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1] gi|77173198|gb|EAO76322.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1] Length = 298 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 10/296 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QFS 86 L+ P +DAT G G+S ++ A D+D A+ ++ Y + Q + Sbjct: 2 LDIKPDGTYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDIAHIRLKKYVDTGQVT 61 Query: 87 LFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGI 142 + F L + ++G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ + Sbjct: 62 FIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSL 121 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A DVVN + DL RI GE+K + +IA I + R P TT +L+ +I+ + Sbjct: 122 TAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSAK 181 Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 182 ELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQL 241 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F S + + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 242 FKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRI 297 >gi|261838057|gb|ACX97823.1| hypothetical protein KHP_0616 [Helicobacter pylori 51] Length = 308 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 168/310 (54%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 SG++A V+N +V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESGLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKITERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|319953733|ref|YP_004165000.1| ribosomal RNA small subunit methyltransferase h [Cellulophaga algicola DSM 14237] gi|319422393|gb|ADV49502.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga algicola DSM 14237] Length = 302 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL++ I LN + +D TFG GG+S + A D+D A+ Sbjct: 1 MSYHNPVLLKESIDGLNIKSDGIYVDVTFGGGGHSTEILSRLGAKGKLYAFDQDEDALKN 60 Query: 74 GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + E+F L F SQ + K VDG++ D GVSS Q D +RGFS + Sbjct: 61 AID-----DERFVLIHENFRFISQFLKFYGIKKVDGILGDFGVSSHQFDVAERGFSTRFD 115 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRMS +SA DVVN DL R+L G+ + A+ IA AI+ R+ P +TT Sbjct: 116 ADLDMRMSKRNAVSAYDVVNTYAYDDLRRVLFQYGDLRNANAIATAIIANREETPIKTTD 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L S +++ + ++I + +QA+RI VN EIE + + L L G L V+S Sbjct: 176 QLKSGLKQFLPARVEHKI--LAQIYQAIRIEVNQEIEVIKEFLLQVPDLLNEEGRLSVIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK FF S + + + + P + + + VP+++++A N R+RSA Sbjct: 234 YHSLEDRLVKNFFRSGKFEGEPDKDFYGNMSLP--LKKV-GGLTVPSKKEIAGNNRARSA 290 Query: 310 KLRAGMR 316 KLR + Sbjct: 291 KLRIAEK 297 >gi|256825484|ref|YP_003149444.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM 20547] gi|256688877|gb|ACV06679.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM 20547] Length = 335 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 11/314 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 T HVPV+L +++ LL PA V LD T G GG++ + + V+ +DRDP Sbjct: 10 PTSTRHVPVMLPRILDLLAPALDGVDGAVHLDGTLGMGGHAEALLERFGHARVVGIDRDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ E + + +F T+ ++ + ++FDLGVSS+Q+D RGF Sbjct: 70 QAIELASERLARFGHRFVAHHGTYDEVGPALDRLGVDSAQSMLFDLGVSSLQLDEVGRGF 129 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ ++ PLDMRM+ + G SA+DV+N DL R+L GEE+ A +IA A+++ R++ P Sbjct: 130 SYSRNAPLDMRMNPTVGQSAADVLNTYGHGDLARVLKEYGEERFAGKIASAVLRERETEP 189 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F + L L+++TV S+ HPA R+FQALRI VN+E+ A + A L GG Sbjct: 190 FTDSARLVELLERTVPAASQRTGGHPAKRTFQALRIEVNSELSIWATTVHRALDHLAVGG 249 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+S+HSLEDRL K+ FA+ + + H + T+ P + + A N Sbjct: 250 RLAVLSYHSLEDRLTKQAFAAGATSSAPEGLPVELPEHAPWLRLATRGAEQPDEGERAVN 309 Query: 304 RRSRSAKLRAGMRT 317 RRS SA+LR RT Sbjct: 310 RRSSSARLRVAERT 323 >gi|171316199|ref|ZP_02905422.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5] gi|171098613|gb|EDT43410.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5] Length = 313 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +V N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPSLKIISR--QFPSEAEVVANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|269958801|ref|YP_003328589.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel] gi|269848631|gb|ACZ49275.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel] Length = 291 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 179/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL +V+ L+P GK+ +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVMETLSPQDGKIYIDATFGGGGYSRKMLEMARCAVYAIDQDITVKEYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + SL + FS+L++ + G++ +VFDLG S+MQ+ RGFSF KSG LDM Sbjct: 63 QSFPGRLSLAISKFSRLREVMLSFGINRVDGIVFDLGTSAMQLADPSRGFSFMKSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S +A+ VN K++ I+ G E+++ ++A AIV RQ +T+DL+ + Sbjct: 123 RMCSSSQRNAALFVNTVLEKEMADIIYHYGGERRSRKVARAIVDARQKRKINSTEDLAEI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A K L+ GG ++V SFHSLE Sbjct: 183 IRSVVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAASKLLRVGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ F S F + KK + PT E++ N RSRS KLRA Sbjct: 243 DRVVKQKFKSLCDMG---------------FSLVNKKAIRPTDEEIRDNPRSRSGKLRAI 287 Query: 315 MRTV 318 +R Sbjct: 288 VRVE 291 >gi|291514761|emb|CBK63971.1| S-adenosyl-methyltransferase MraW [Alistipes shahii WAL 8301] Length = 300 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 161/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H PVLLE+ + LL P D TFG GG+SR + D+D + Sbjct: 1 MSQYHTPVLLEESVGLLAVEPAGTYADLTFGGGGHSRRILSDLGPEGRLYGFDQDRDTLE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 R +F ++ F L+ VDG++ DLGVSS D +RGFSF+ Sbjct: 61 N-----RPDDARFHYVESNFRFLRGALRLRGVTEVDGILADLGVSSHHFDAVERGFSFRG 115 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ G +A+DVVN +DLTRILG GE + ++A+ +VK R +AP TT Sbjct: 116 EAPLDMRMNQRGRLTAADVVNDYTAEDLTRILGDWGEVETPWKVANCLVKARAAAPVTTT 175 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++ K + T+ FQALRI VN E+E L L + + LK GG L+V+ Sbjct: 176 AQLVGAVKPCT--PKKDEAKFLTKLFQALRIEVNGEMEALKMALEQSLRVLKPGGRLVVI 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK F S + + + P F +T+K V P+ E++ N RSRS Sbjct: 234 SYHSLEDRLVKNFMRSGNFSGQVEKDFFGRSQAP--FDLVTRKAVTPSAEELDRNPRSRS 291 Query: 309 AKLRAGMR 316 AKLRA ++ Sbjct: 292 AKLRAAVK 299 >gi|258649007|ref|ZP_05736476.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259] gi|260850623|gb|EEX70492.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259] Length = 312 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 158/309 (51%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA---VS 72 H+PVLL+ + LN P +D TFG GG+SR + ++A D+D A + Sbjct: 8 YHIPVLLQTTVDGLNVRPDGCYVDCTFGGGGHSREILRRLGPNGRLLAFDQDADAQRNIP 67 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 G++ + + F Y VDG++ DLGVSS D DRGFSF+ G Sbjct: 68 AGEDRLTFVQSNFRYLP----NWLHYYGYAQVDGILADLGVSSHHFDAADRGFSFRFEGA 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA+ VVN + + L + + GE R+A AI+K R +AP + + L Sbjct: 124 LDMRMNKRAHTSAAGVVNTYSEEQLANLFYLYGELNNGRRLAAAIIKARAAAPIERVEQL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + ++ + + FQALRI VN+E+E L L +A LK GG L ++++H Sbjct: 184 VDVVTPYLGAARAKK--DMAKVFQALRIEVNHEMEALEAMLTAALTLLKPGGRLAILTYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + P + + +V+ P + ++ N RSRSAKL Sbjct: 242 SLEDRLVKNFIKAGNATGKVEQDFYGNRLAP--MKPVNGRVIRPDEAEMNANPRSRSAKL 299 Query: 312 RAGMRTVER 320 R G ER Sbjct: 300 RIGECIAER 308 >gi|42559426|sp|P60397|RSMH_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 304 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 166/310 (53%), Gaps = 14/310 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 ++ T +H+ VL ++ I L P + +DAT G G++ + + + D+D A Sbjct: 1 MNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ + + + + FS L+ + +DG++FDLG+SS QID RGFS+ Sbjct: 61 CTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFSY 119 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ + I+A ++N + L I + GE K A+ +A I+K+R Sbjct: 120 LHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQRPLC--- 176 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ DL ++ + F + H A + FQALRI VN E+E L Q L + LK +++ Sbjct: 177 TSYDLVAITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMIV 233 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK FF S V+ + M + ITKK +P++E++ N RS Sbjct: 234 VISFHSLEDRIVKHFFKKNSTFVL-PKKMPITIMPQTPLSIITKKAFLPSEEEMQNNSRS 292 Query: 307 RSAKLRAGMR 316 SAKLR ++ Sbjct: 293 ISAKLRVAVK 302 >gi|319791660|ref|YP_004153300.1| s-adenosyL-methyltransferase mraw [Variovorax paradoxus EPS] gi|315594123|gb|ADU35189.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus EPS] Length = 307 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 165/309 (53%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + + L + A +DATFG GG++R+ +IA D+D AV+ Sbjct: 6 THTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDAEAVA 65 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + D V+G++ DLGVSS QID RGFSF+ GP Sbjct: 66 EAARI---SDARFSIRHQGFRSLGELP-DASVNGLLMDLGVSSPQIDNPVRGFSFRFDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S ++ + A ++ + ++ GEE+ A +IA AIV RRQ +T Sbjct: 122 LDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPISTTTE 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQA RIF+N E+EEL Q L ++ L+ GG L V+SFH Sbjct: 182 LAELVAGTVKTREQGQNPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLAVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + ++ + + P++++V N RSRSA L Sbjct: 242 SLEDRIVKQFIAKHSKEV-YDRRAPFAAPKVMKLNALER--IKPSEDEVRGNPRSRSAIL 298 Query: 312 RAGMRTVER 320 R RT Sbjct: 299 RVAERTEAN 307 >gi|330997819|ref|ZP_08321654.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT 11841] gi|329569707|gb|EGG51472.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT 11841] Length = 302 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 HVPVLL++ + L P V D TFG GG+SR+ ++ + D+D A + Sbjct: 3 EAVYHVPVLLKECVDGLVVNPAGVYADVTFGGGGHSRAIVSRLDTAGHLYSFDQDEDAEA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +F+ ++ F L++++ +DG++ DLGVSS D +RGFSF+ Sbjct: 63 N-----IVADGRFTFVRSNFRYLKNWMRYYGVGELDGLLADLGVSSHHFDDAERGFSFRF 117 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ ++A+DV+N + L I + GE K A ++A +VK R +TT Sbjct: 118 DGRLDMRMNQRAQLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++ +++ + + + FQALRI VN E++ L + L +A + L+ GG L+V+ Sbjct: 178 EEFMEVVKPLFERDREKK--ELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVL 235 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK +G V R +++ KV+VP +E+ N RSRS Sbjct: 236 TYHSLEDRMVKNLVK--TGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRS 293 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 294 AKLRIAEK 301 >gi|39939221|ref|NP_950987.1| hypothetical protein PAM_735 [Onion yellows phytoplasma OY-M] gi|39722330|dbj|BAD04820.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 342 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 167/311 (53%), Gaps = 14/311 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPF 69 +++ T +H+ VL ++ I L P + +DAT G G++ + + + D+D Sbjct: 38 SMNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVE 97 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + ++ + + + + FS L+ + +DG++FDLG+SS QID RGFS Sbjct: 98 ACTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFS 156 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM+ + I+A ++N + L I + GE K A+ +A I+K+R Sbjct: 157 YLHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQRPLC-- 214 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ DL ++ + F + H A + FQALRI VN E+E L Q L + LK ++ Sbjct: 215 -TSYDLVAITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMI 270 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFHSLEDR+VK FF S V+ + M + ITKK +P++E++ N R Sbjct: 271 VVISFHSLEDRIVKHFFKKNSTFVL-PKKMPITIMPQTPLSIITKKAFLPSEEEMQNNSR 329 Query: 306 SRSAKLRAGMR 316 S SAKLR ++ Sbjct: 330 SISAKLRVAVK 340 >gi|217967641|ref|YP_002353147.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724] gi|263446377|sp|B8E088|RSMH_DICTD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217336740|gb|ACK42533.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724] Length = 295 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 27/312 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H PV+L++VI L +PGK+++DAT G GG+S + +I +DRD Sbjct: 1 MEEIEIIHKPVMLKEVIHYLKLSPGKIVVDATLGLGGHSSEILRELKGEGLLIGIDRDEE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 ++ +E +R F LF T+ ++Q+ + + +D ++FDLG SS I+ +RGFS Sbjct: 61 VLNLARERLRKIANNFVLFNTTYDKVQEILKELKLSFIDAILFDLGFSSFHIEKSERGFS 120 Query: 127 FQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 F + + ++A+D++N N +L+ + GEE + ++A IV+RR+ Sbjct: 121 FMRPEEPLDMRYSKDTTLTAADILNSFNELELSNLFWEYGEEPLSRKLAKKIVERRKEKK 180 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F +DL ++++ + + H AT+ FQALRI VN+E+ L + L L G Sbjct: 181 FVYVKDLLEVVEEVIP---KRKRHEATKVFQALRIVVNDEVNILKRALDQIPFILAPRGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+++HS+EDR+VK FF S S K+ + KKV+ P+ ++ NR Sbjct: 238 IVVLTYHSIEDRVVKNFFKSHSDKIFP----------------VNKKVIRPSVNEIRENR 281 Query: 305 RSRSAKLRAGMR 316 R+RSAKLR G R Sbjct: 282 RARSAKLRVGER 293 >gi|222112157|ref|YP_002554421.1| s-adenosyl-methyltransferase mraw [Acidovorax ebreus TPSY] gi|263447303|sp|B9MFS0|RSMH_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221731601|gb|ACM34421.1| S-adenosyl-methyltransferase MraW [Acidovorax ebreus TPSY] Length = 308 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 164/309 (53%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL++ + L AP +D TFG GG+SR + ++A D+D A+ Sbjct: 7 HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ FS L + V GV+ DLGVSS QID RGFSF+ GPL Sbjct: 67 AARI---TDARFSIRHQGFSHLGELPAA-SVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G S ++ + A + ++ GEE+ A IA AIV RR ++ Sbjct: 123 DMRMDTTRGQSVAEWLADAEAAQIAEVIRDYGEERFAGPIAKAIVARRTERGPISSTAEL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I ++ +PATR+FQALRIF+N E+EEL Q L + + L+ GG L+V+SFHS Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALEGSLRVLRPGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F A S +V R + P +++ + + P+ ++VA N R+RSA +R Sbjct: 243 LEDRIVKQFIAQHSKEV-YDRRAPFAPPQPMRLKALER--IKPSTDEVAANARARSAVMR 299 Query: 313 AGMRTVERS 321 RT + Sbjct: 300 VAERTEVPA 308 >gi|317473246|ref|ZP_07932543.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] gi|316899341|gb|EFV21358.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] Length = 303 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 158/299 (52%), Gaps = 9/299 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H VLL++ I L P + +D T G GG++ I +D+D A+ Sbjct: 4 EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++++ ++ + + + + D VDG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA D+VN + ++L I+ GE+K A IA I R+ P +TT L Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKVPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI N E+E L L + L G L +++F Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+ F + + + + + IT+K ++PT+E++ N+R++S Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKS 302 >gi|50955157|ref|YP_062445.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|54036175|sp|Q6AE56|RSMH_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50951639|gb|AAT89340.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 325 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 170/320 (53%), Gaps = 11/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIA 63 MS IH I H+PVLLE+ I LL PA PG VI+DAT G GG+S ++ Sbjct: 1 MSDDIHGDI--HLPVLLERCIELLAPALQEPGAVIVDATLGMGGHSAGILARFPQATLVG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDC 120 LDRDP A++ E + + ++ L + +++ + V GV+FDLGVSS+Q+D Sbjct: 59 LDRDPDALAIAGERLARFGDRVHLVHTVYDGIREALDGLGIAEVQGVLFDLGVSSLQLDR 118 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ K PLDMRM + +A V+ + DL RI GEEK A+R A IV Sbjct: 119 VERGFSYSKDAPLDMRMDGTSDLTAERVLAEYPEADLRRIFRDYGEEKLAARYAQRIVAA 178 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 RQ P + +L L+Q+ + + HPA R FQALRI VN E+ L + L +A AL Sbjct: 179 RQQGPITRSGELVHLLQRATPAAIARQGHPAKRVFQALRIEVNQELAVLERALPAAVDAL 238 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L+V S+ SLEDR+VK+ +RS + H + + + + ++ Sbjct: 239 AVGGRLVVESYQSLEDRIVKRELQTRSRSSAPAGLPVELPEHRPELRLLIRGAELADDDE 298 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 A N R+ +LRA RT Sbjct: 299 KAANPRAAPVRLRAAERTRA 318 >gi|187930165|ref|YP_001900652.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J] gi|262825235|sp|B2UCY5|RSMH_RALPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187727055|gb|ACD28220.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J] Length = 319 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 113/324 (34%), Positives = 177/324 (54%), Gaps = 23/324 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VLL++ + L + +D TFG GG+SR + G ++A D+ Sbjct: 1 MTTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A++ +F++ +F+Q+ D + V GV+ DLG+SS QID G R Sbjct: 61 DPAAITEAG---TVEDARFAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGAR 117 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-- 180 GFSF+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQ 177 Query: 181 --QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL++A Sbjct: 178 SGDRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFDR 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKV 292 L+ GG L+V+SFHSLEDR+VK+F + + + + + + + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR-- 294 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 V P++ +V+ N R+RSA +R R Sbjct: 295 VKPSEAEVSANPRARSAIMRVAER 318 >gi|313206538|ref|YP_004045715.1| s-adenosyl-methyltransferase mraw [Riemerella anatipestifer DSM 15868] gi|312445854|gb|ADQ82209.1| S-adenosyl-methyltransferase MraW [Riemerella anatipestifer DSM 15868] gi|315023521|gb|EFT36525.1| S-adenosyl-methyltransferase mraW [Riemerella anatipestifer RA-YM] gi|325336013|gb|ADZ12287.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Riemerella anatipestifer RA-GD] Length = 297 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 161/306 (52%), Gaps = 17/306 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H VLL++ + L V +D TFG GG+SR D+D A+ Sbjct: 2 YHQSVLLKESVDALVLNADGVYVDCTFGGGGHSREIVSRLSSAGRHFGFDQDLDALEN-- 59 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + E+F++ F L++ VDG++ DLGVSS Q D +RGFS + P Sbjct: 60 ---KLDDERFTIINQNFRFLENSLMLYGVTQVDGILADLGVSSHQFDAAERGFSTRSDAP 116 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G++A VVN+ + L I GE ++A R+A +V R+S P +TT+DL Sbjct: 117 LDMRMNVMQGLNAQKVVNEYEEEHLADIFYHYGELREARRLARELVHYRKSKPIKTTEDL 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+ Y + + + FQA+RI VN E+E L + L A + LK GG L+V+S+H Sbjct: 177 KSVF---KYIPPHKQNKFFAQLFQAIRIEVNQELEALKEMLEQAYRILKPGGRLVVISYH 233 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + R + + F+ + K VPT+E++ N R+RSAK+ Sbjct: 234 SLEDRLVKRFLKNGMFDGEPERDIY--GNYTKAFELLQSKAFVPTEEEIEANSRARSAKM 291 Query: 312 RAGMRT 317 R G++ Sbjct: 292 RVGIKV 297 >gi|300864772|ref|ZP_07109623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Oscillatoria sp. PCC 6506] gi|300337241|emb|CBN54771.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Oscillatoria sp. PCC 6506] Length = 306 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 160/319 (50%), Gaps = 28/319 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--I 62 S K + ++ + H+PVL ++I L G LDAT G GG++R +V + Sbjct: 7 SEKEVVASKVESGVYHIPVLGPQLIEGLAVRAGGHYLDATVGGGGHTRLILAAAPDVTIV 66 Query: 63 ALDRDPFAVSCGQ----ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 A+D+D A++ + E + + + F+ + DG++ DLGVSS Q+ Sbjct: 67 AIDQDLDAIAFCKQQLAEFLAPNSARIQFWHGNFASYPA--KESTFDGIIADLGVSSAQL 124 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D RGFSF+ LDMRM+ +A+++VN L I GEE+ + RIA IV Sbjct: 125 DAPGRGFSFRHHANLDMRMNQQQSLTAAEIVNHWEEVKLADIFYTYGEERLSRRIARRIV 184 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 TT+ ++ + + RIHPATR+FQALRI VN+E+ + L+ A + Sbjct: 185 G--DRPFQTTTELAEAIARCVPPKYRYGRIHPATRTFQALRIAVNSELTAVETFLKQAPQ 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 LK GG + ++SFHSLEDRL K S + + +TKK + P Sbjct: 243 WLKPGGRMGIISFHSLEDRLAKHELKGSS-----------------LLRVLTKKPIQPAT 285 Query: 298 EDVAFNRRSRSAKLRAGMR 316 E+VA N R+RSAKLR R Sbjct: 286 EEVAKNPRARSAKLRLAER 304 >gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985] gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985] Length = 319 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 176/312 (56%), Gaps = 7/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + HVPVLL +V+ LL PA P V++DAT G GG++++ + V+ +DRD Sbjct: 1 MSAQEPQHVPVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A+ + + ++ A F +++ + D+ +G + DLGVSSMQ+D RGF++ Sbjct: 61 EKAIEVARARLGALADRVRFVHARFDEVEHALGDEAANGYLLDLGVSSMQLDQAQRGFAY 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K PLDMRM S ++A++V+ ++L R+L GEE+ ASRIA AIV+RR +AP Sbjct: 121 SKEAPLDMRMDSSAELTAAEVLATYEERELARVLRTYGEERFASRIAAAIVRRRSTAPLS 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++ +L LI + K HPA R+FQALR+ VN+E+ L L A AL G + Sbjct: 181 SSAELVRLIDDAIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAALPKALAALAPSGRI 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++ SLEDR+VK+ FA + + + A F S+T+ + + E++A N R Sbjct: 241 VVLAYQSLEDRIVKEAFARATTSRTPIGLPVELPGFAAEFVSLTRGAELASDEEIAQNSR 300 Query: 306 SRSAKLRAGMRT 317 + S +LR R Sbjct: 301 AASVRLRGVERI 312 >gi|237749177|ref|ZP_04579657.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13] gi|229380539|gb|EEO30630.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13] Length = 319 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 173/312 (55%), Gaps = 18/312 (5%) Query: 19 DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + L + +D TFG GG+SR + +IA D+DP AVS Sbjct: 5 THDSVLLKEAVDALAIEGDRVNGIFIDGTFGRGGHSRLILERLGGEGRLIAFDKDPEAVS 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129 + +F + +F+ L + + +KG++ + + DLG+SS Q++ RGFSF+ Sbjct: 65 VAGKI---TDPRFEIVHKSFADLGEVLEEKGIEMIDGILLDLGISSPQVEDAARGFSFRL 121 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G+SA++ + + + ++ GEE+ A +IA AIV R P +T Sbjct: 122 EGPLDMRMDSTRGLSAAEWLAVETEEKIAEVIHQYGEERFAFQIAKAIVACRTIKPIDST 181 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V + + +PATR+FQA+RIF+N E+EEL GL++A + L+ G + V+ Sbjct: 182 KQLAEIVAGAVKTFEKGK-NPATRTFQAIRIFINRELEELEIGLQAAWQHLRLNGRMSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VKKF + ++ M R + + + + K P++ +V+ N RS Sbjct: 241 SFHSLEDRIVKKFLSGKAKVDMPDRRLPIRAIDLPQPEMKLLGK--QKPSKAEVSKNARS 298 Query: 307 RSAKLRAGMRTV 318 RSA LR R Sbjct: 299 RSAILRIATRVS 310 >gi|124265647|ref|YP_001019651.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1] gi|167011833|sp|A2SCX7|RSMH_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|124258422|gb|ABM93416.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1] Length = 318 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 187/317 (58%), Gaps = 15/317 (4%) Query: 13 IHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRD 67 ++ +G H VLL + + L +P +D T+G GG+SR ++A+DRD Sbjct: 1 MNQGVGPWQHTTVLLHEAVDALVHSPDGYYVDGTYGRGGHSRLILSKLSAAGRLLAIDRD 60 Query: 68 PFAVSCGQE-TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 P AV+ R +F + A +S+L + + +DG++ D+GVSS QID +R Sbjct: 61 PDAVAHATSGAARVTDPRFHIEHAPYSELPALLAARGVSRIDGLLLDIGVSSPQIDNPER 120 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQ 181 GFSF+ SGPLDMRM G SA+D + +A+ +++ ++ GEE+ A+ IA A + +R Sbjct: 121 GFSFRASGPLDMRMDPTRGESAADYLARADEREIAAVIRDYGEERFATAIARALVARRLA 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT++L+ L+ + V + + +PATR+FQALRIFVN E+ +L QGL +A + LK Sbjct: 181 GRPVRTTEELAELVAQAVKTREPGQ-NPATRTFQALRIFVNAELTQLEQGLAAALQCLKP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V+SFHSLEDR+VK F AS S V+ R + P +++ + + P ++VA Sbjct: 240 GGRLVVISFHSLEDRIVKTFIASHSKAVVD-RRAPFAPPAPMRLRALAR--LKPGADEVA 296 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RSA LR RT Sbjct: 297 ANPRARSAILRVAERTD 313 >gi|227431984|ref|ZP_03914004.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352269|gb|EEJ42475.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 312 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + IALL+ P +DAT G GG++ K + + D+D A+ E Sbjct: 4 EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNVE 63 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + F L + D V+G+V+DLGVSS+Q D G RGFS++ Sbjct: 64 QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVNGIVYDLGVSSVQFDDGQRGFSYKYDA 123 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +A +VN+ +L R+L GE++ +IA I + R++AP TT + Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA RI VN+E+ L L A + L G + V++ Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F +S + A ++S+T+K + P+ E++A N R+ S Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYESLTRKPISPSTEEMAINHRAES 303 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 304 AKLRGIRR 311 >gi|66769818|ref|YP_244580.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. 8004] gi|81304228|sp|Q4UQW3|RSMH_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|66575150|gb|AAY50560.1| cell division protein [Xanthomonas campestris pv. campestris str. 8004] Length = 342 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 121/308 (39%), Positives = 172/308 (55%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 AV+ Q T + S+ +F++L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AVAVSQHTF-GGDARVSIHPGSFARLVQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLI-ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++A N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVSG-AIKADDSELAVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|111018109|ref|YP_701081.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1] gi|123340963|sp|Q0SHR3|RSMH_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110817639|gb|ABG92923.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1] Length = 338 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 113/322 (35%), Positives = 174/322 (54%), Gaps = 18/322 (5%) Query: 20 HVPVLLEKVIALL-------NPAPGK-VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H+PVLL + LL +P G V++DAT G GG+S F + +IALDRDP Sbjct: 17 HIPVLLHRADELLGPALTVNDPQGGGAVMIDATLGLGGHSEHFLRTYPQLRLIALDRDPH 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + ++ + + ++D + V G++FDLGVSSMQ+D DR Sbjct: 77 ALEIAGGRLAPFADRITFVHTRYDGIEDALDQAGLPAQESVHGILFDLGVSSMQLDESDR 136 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + GI+A++V+N + DL RIL GEE+ A +IA IV++R Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEIVRQRAK 196 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +++ ++ HPA R+FQALR+ VN E++ L + +A AL Sbjct: 197 EPFTTSAALVELLYRSIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ RS + F+ +T+ ++++V Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEVE 316 Query: 302 FNRRSRSAKLRAGMRTVERSIE 323 N RS +LRA R RS Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338 >gi|315504598|ref|YP_004083485.1| s-adenosyl-methyltransferase mraw [Micromonospora sp. L5] gi|315411217|gb|ADU09334.1| S-adenosyl-methyltransferase MraW [Micromonospora sp. L5] Length = 391 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 11/310 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL P PG+ + +DAT G G++ + + +I LDRD A+ Sbjct: 28 GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 88 AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G++A +VVN + DL R+L + GEEK A +IA AI++ R+ + Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L++ + + HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K+ A R V + F+ +++ +P + +VA N R+ Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327 Query: 307 RSAKLRAGMR 316 S +LRA R Sbjct: 328 ASVRLRAAER 337 >gi|302868932|ref|YP_003837569.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC 27029] gi|302571791|gb|ADL47993.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC 27029] Length = 391 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 11/310 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL P PG+ + +DAT G G++ + + +I LDRD A+ Sbjct: 28 GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 88 AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G++A +VVN + DL R+L + GEEK A +IA AI++ R+ + Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L++ + + HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K+ A R V + F+ +++ +P + +VA N R+ Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327 Query: 307 RSAKLRAGMR 316 S +LRA R Sbjct: 328 ASVRLRAAER 337 >gi|325923945|ref|ZP_08185535.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865] gi|325545571|gb|EGD16835.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865] Length = 352 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQPPAAHVPVLYTQVLDGLQVIENGTYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPE 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++ + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVAEQAF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 130 DGPLDMRMDPDVGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRTEQPLLRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 190 AQLAELI-ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALGALKPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q +T V ++++ N R+RS Sbjct: 249 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVTG-AVKADFDELSVNPRARS 307 Query: 309 AKLRAGMR 316 A LR + Sbjct: 308 AVLRVAEK 315 >gi|300774439|ref|ZP_07084302.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC 35910] gi|300506254|gb|EFK37389.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC 35910] Length = 297 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 161/306 (52%), Gaps = 17/306 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H PVLL++ + L P + +D TFG GG+SR + + D+D A+ Sbjct: 2 YHNPVLLKQSVDDLVTNPDGIYVDCTFGGGGHSREILSRLSDKGRLFSFDQDLDALKNTI 61 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F+L F L++ VDG++ DLGVSS Q D DRGFS + + P Sbjct: 62 D-----DPRFTLVNQNFRFLENSLLMYGVSQVDGILADLGVSSHQFDEADRGFSTRSNAP 116 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A V+N+ ++L + GE ++A ++A IV R++ +TT+DL Sbjct: 117 LDMRMNVMQNLDAKRVINEYEEEELADLFYHYGELREARKLAREIVHHRKTKSIETTEDL 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L + K N+ + FQA+RI VN E+E L + L A LK G L+V+S+H Sbjct: 177 KKLF-SYIPPHKVNK--FYAQLFQAIRIEVNQELEVLKEMLVQAYNVLKPEGRLVVISYH 233 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + R + + F+ + K ++P +++ N R+RSAK+ Sbjct: 234 SLEDRLVKRFLKNGMFEGEPERDIY--GNYKKAFELVKSKAIIPDDKEIEENSRARSAKM 291 Query: 312 RAGMRT 317 R G++ Sbjct: 292 RTGIKV 297 >gi|194290821|ref|YP_002006728.1| s-adenosyl-methyltransferase mraw [Cupriavidus taiwanensis LMG 19424] gi|263446166|sp|B3R6W7|RSMH_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193224656|emb|CAQ70667.1| S-adenosyl-dependent methyl transferase [Cupriavidus taiwanensis LMG 19424] Length = 329 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 179/327 (54%), Gaps = 23/327 (7%) Query: 9 MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63 MS H VLL++ + L P V +D TFG GG+SR+ ++A Sbjct: 1 MSPTGTPATPALQHRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122 D+DP A++ +FS+ A+F+ + + V GV+ DLG+SS QID Sbjct: 61 FDKDPAAIAEAGTIK---DARFSIEHASFAAMAERLAGRGHVAGVLLDLGISSPQIDEAA 117 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM GI+A+ + QA+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRS 177 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P TT DL++L+ K V ++ PATR+FQALRI VN E+E+L +GL++A Sbjct: 178 ESGDGGPVATTADLAALVAKAV-KTREKGQDPATRTFQALRIHVNQELEDLERGLKAAYD 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291 L+ GG L+V+SFHSLEDR+VK+F A+ + + ++ + + + Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318 P E+VA N R+RSA +R + Sbjct: 296 -YKPGAEEVAANPRARSAVMRVAEKLA 321 >gi|257784283|ref|YP_003179500.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469] gi|257472790|gb|ACV50909.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469] Length = 327 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L +V+ L+P PG+V+ D T G G++ K+ I +D+D A Sbjct: 14 HQPVMLAEVLRELDPKPGEVVCDCTLGGAGHTVEMAKLIAPDGLSIGIDQDAMAHQAAAA 73 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ +F + F L + + GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 74 RLKQEVPNAEFLPLKGNFGDLDELLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 133 Query: 132 PLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +V+N N DL RIL I G+EK ASRIA IV+ R+ P QTT Sbjct: 134 PLDMRMDPGKQTPTAQEVINTYNEADLARILRIYGDEKFASRIARRIVQTREKRPIQTTF 193 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + + + HPA ++FQALRI VN+E+E L +GLRSA GG + V+ Sbjct: 194 ELVEVIKAAIPAAARRHGGHPARKTFQALRIEVNHELEVLERGLRSAIAWANPGGRICVI 253 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK F+ S + + + IT+K +V T E++ N R+R Sbjct: 254 SYHSLEDRIVKHVFSELSQGCICPPDLPVCMCGQVPIVDVITRKPLVATPEEIERNPRAR 313 Query: 308 SAKLRAGMR 316 SA +R ++ Sbjct: 314 SALMRVAVK 322 >gi|91216023|ref|ZP_01252992.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC 700755] gi|91186000|gb|EAS72374.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC 700755] Length = 303 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 164/311 (52%), Gaps = 17/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 I H+PVLL++ + ++ P +D TFG GG+S + A D+D Sbjct: 2 IMTNRAYHLPVLLKESVDGMSIQPEGTYVDVTFGGGGHSAEILSRLGEKGRLFAFDQDQD 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126 A E +F+L A F ++ ++ VDG++ D GVSS Q D G+RGFS Sbjct: 62 AQENSIE-----DPRFTLIPANFRFIKRFLRLEGVNEVDGILGDFGVSSHQFDKGERGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + LDMRM + G+ AS++VN + + L +++ GE K + ++A AIV+RR P Sbjct: 117 IRFEAELDMRMDQNTGLGASELVNTYSQEQLAQLIWQYGEIKMSRKLAKAIVERRIIEPI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++T+DL+ L+ +K N+ + +QA+RI VN E+E L + L + + GG L Sbjct: 177 KSTKDLNDLLTPFFPPTKVNK--FLAQVYQAIRIEVNQEMEALKEFLLQTSELITKGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDRLVK+F + + P F+ + K++ P ++ N+R Sbjct: 235 SLISYHSLEDRLVKRFIRDGKFSGAPEKDFYGNMLVP--FKKV-GKMITPGAAELQKNKR 291 Query: 306 SRSAKLRAGMR 316 SRSAKLR G + Sbjct: 292 SRSAKLRIGEK 302 >gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2] gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2] Length = 297 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 130/289 (44%), Positives = 176/289 (60%), Gaps = 7/289 (2%) Query: 42 DATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 D TFG GGY+R+ G+ VI +DRDP A + + DY ++ FS+L +Y Sbjct: 2 DGTFGNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLDEYGA 61 Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRIL 160 D +DGVV DLGVSSMQ+D +RGFSF + GPLDMRMS G SA+D+ N A+ +L I+ Sbjct: 62 D--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQDGPSAADLCNDADEAELADII 119 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 + GEE+ + RIA AIV R P TT L+ +++ + SK + HPATR+FQALRI Sbjct: 120 YLYGEERASRRIAKAIVDAR---PLTTTLQLAKIVEGCLPRSKPGQSHPATRTFQALRIA 176 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSN 279 VNNE ELA+GL +AE+ALK G L VV+FHS+EDR+VK+F +RSG R+ Sbjct: 177 VNNEYGELAEGLMAAERALKPDGQLAVVTFHSVEDRMVKRFLQARSGNTANANRYAPEIE 236 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328 ++ +K + P + ++A N RSRSAKLR RT + D Sbjct: 237 QVTPAWRIEKRKAIGPDEAELAENPRSRSAKLRVASRTDAPAEPIDPAK 285 >gi|330994431|ref|ZP_08318356.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter sp. SXCC-1] gi|329758431|gb|EGG74950.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter sp. SXCC-1] Length = 319 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 170/308 (55%), Gaps = 14/308 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK 82 +L +V+ L P G +D TFG GGY+R+ + +DRDP A++ GQ Sbjct: 2 MLAEVMDYLAPRDGGRYVDGTFGGGGYARAILASCACQLWGIDRDPAAIARGQALAHTCT 61 Query: 83 -----EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + L F+ + + + VDG+V DLGVSS QID +RGFSF+ GPLD Sbjct: 62 APDGTPRLHLLHGGFAGMAALLAEAGVARVDGIVLDLGVSSYQIDQAERGFSFRMDGPLD 121 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM +G +A+DVVN +L I+ GEE+ + R+A AIV R AP T L+ + Sbjct: 122 MRMGDTGPTAADVVNTLPEDELADIIYHYGEERLSRRVARAIVAARAEAPLLRTTQLADV 181 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ V + + I PATR+FQ LRI VN+E+ ++ + L A + L GG L+VVSFHSLE Sbjct: 182 VRSVVRPDR-SGIDPATRTFQGLRIHVNDELGQIRRVLEEAPRLLAPGGRLVVVSFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 DRLVK+ A +G+ A P A P F+ +T + + P +E+ N R+RSA+ Sbjct: 241 DRLVKQAMALAAGRTPAPSRHDPRAMTQRAGPTGFRLLTGRPIRPGEEETRRNPRARSAR 300 Query: 311 LRAGMRTV 318 LRA Sbjct: 301 LRALECIA 308 >gi|309792354|ref|ZP_07686822.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6] gi|308225575|gb|EFO79335.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6] Length = 317 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 170/307 (55%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ- 75 H+ VL + V A LNP PG + LD T G GG++ + + +I +D DP A++ Q Sbjct: 16 HISVLAQPVQAALNPRPGGIYLDGTLGGGGHALAVLQAAQPDGRLIGIDADPAALAAAQA 75 Query: 76 -----ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + F +Q+ DG++ DLGVSS Q+D +RGFSF Sbjct: 76 RMAAANIPASSYQFFHGRFGAMAQIARQAGITSCDGILLDLGVSSPQLDWAERGFSFSAD 135 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMR+ G +A+D+VN + + L I+ GEE+ + +IA IV+RR+ APF+ T Sbjct: 136 GPLDMRLDPTQGHTAADLVNTLDEQYLADIIFRYGEERGSRKIARLIVERRKHAPFERTA 195 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL++L+ + V RIHPATR+FQALRI VN E+E+L L A L +GG L V+S Sbjct: 196 DLAALVARAVGRGGRERIHPATRTFQALRIAVNTELEQLEIALPQAVDLLHSGGRLAVIS 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F + SG P + ITKK + E++A N RSRSA Sbjct: 256 FHSLEDRIVKHFLRAESGYGGNANP------RPPRLRIITKKPLEADAEELAANPRSRSA 309 Query: 310 KLRAGMR 316 KLR + Sbjct: 310 KLRVAEK 316 >gi|71894357|ref|YP_278465.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53] gi|88909204|sp|Q4A667|RSMH_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71851145|gb|AAZ43754.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53] Length = 301 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 168/310 (54%), Gaps = 15/310 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 +H+PVLL +V+ L + +D T G GG+S+ K +IA D+D FA+ Sbjct: 1 MKNNHIPVLLNEVLDNLALKENGIYIDLTLGMGGHSKEILKRIPKGKLIAFDKDDFAIKN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +T+ + F + ++ F ++ + + VDG++ DLG+SS QID +RGFS+ K+ Sbjct: 61 ASKTLSEVANNFEIIKSDFKDFKEELSNLGIYKVDGILADLGISSPQIDNAERGFSYLKN 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S SA DVVN V+ L IL GE K IA I++ R P TT Sbjct: 121 SALDMRMDQSQKLSAYDVVNLYPVEKLEYILKTYGEVKNYKYIASKIIEAR---PINTTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L++LI+ +PA FQA+RI VNNE++ + Q L S E LK L+++S Sbjct: 178 ELANLIKSVTPQKLLKLKNPAKNVFQAIRIEVNNELDSIHQMLSSVEDLLKVNASLLIIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED++VK +F + + + I + A T++ + P+++++ N RS+SA Sbjct: 238 FHSLEDKIVKNYFQELTKPKLPSKMPIQEDKFFA-----TRR-IYPSKQELNLNSRSKSA 291 Query: 310 KLRAGMRTVE 319 KLR + + Sbjct: 292 KLRILTKIKD 301 >gi|161526013|ref|YP_001581025.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|189349270|ref|YP_001944898.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|263446911|sp|A9AJ24|RSMH_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160343442|gb|ABX16528.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|189333292|dbj|BAG42362.1| S-adenosyl-methyltransferase [Burkholderia multivorans ATCC 17616] Length = 313 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IGDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I + P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMR 316 +R R Sbjct: 304 VMRIAER 310 >gi|154488900|ref|ZP_02029749.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis L2-32] gi|154083037|gb|EDN82082.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis L2-32] Length = 343 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 160/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 + H PVLL + L+ P PG + +D T G G+S +F K + +I +DRD Sbjct: 1 MTDVTTIHQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ + M ++F+ A F + D+ V+ V DLG+SS+QID + Sbjct: 61 TEALALATKRMEMDGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + +A V+ + + DL RI GEE+ + +IA IV+RR+ Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRTYGEERFSKQIAREIVRRRE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 TEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F + F+ +T+ + E++A Sbjct: 241 GGRLVVESYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 NNPRSASVRLRAVE 314 >gi|283798338|ref|ZP_06347491.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|291073921|gb|EFE11285.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|295092799|emb|CBK78906.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum K10] Length = 317 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 160/311 (51%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLL + + LN P + +D T G GG++ G +I LD+D A++ Sbjct: 1 MTFSHTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ Y ++ ++ + + +++ + VDG+ DLGVSS Q+D +RGF++++ Sbjct: 61 AATERLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYRE 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +A D+VN + +L RI+ GE++ A IA IVK RQ +T Sbjct: 121 DDAPLDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIET 180 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +L+ +I+ + + HPA R+FQA+RI +N E++ L + + + L GG L Sbjct: 181 AGELTEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLS 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F + + +T+K ++P+ E+++ N+R Sbjct: 241 VITFHSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKR 300 Query: 306 SRSAKLRAGMR 316 S+SAKLR + Sbjct: 301 SKSAKLRVFEK 311 >gi|212702349|ref|ZP_03310477.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098] gi|212674227|gb|EEB34710.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098] Length = 334 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 171/316 (54%), Gaps = 16/316 (5%) Query: 20 HVPVLLEKVIALLNPAPGK------VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 H+PVL+++ +A L P ILD T G G+S + + + ALDRD A+ Sbjct: 16 HIPVLMKETLAALQPVLDAGRDRPVRILDGTLGMAGHSCAMLQAAPMAELCALDRDEEAL 75 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + ++ + +SQ ++ + D + VD V+ D+GVSS+Q+D +RGFSF Sbjct: 76 ELARRRLEPFGDRVHTYHCRYSQFEEALDDLGWEKVDAVLLDIGVSSLQLDEAERGFSFY 135 Query: 129 KSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM SA VN+ N L + LGEE QA RIA AIV RQ +P Sbjct: 136 GDGPLDMRMDQHSGAPSAWHWVNRENFDRLKECIATLGEEPQAGRIARAIVDARQKSPID 195 Query: 187 TTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L++L++K + + HPATR+FQALR+ VN+E+ EL + L + L GG Sbjct: 196 TTAQLAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDAILGRLSLGGR 255 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+SFHSLEDR+VK+ + RH + H + + KK V +++A N Sbjct: 256 LSVISFHSLEDRMVKQTMRYWAEGCRCPRHVPVCVCHHVPEVEILYKKPVQADDDELAVN 315 Query: 304 RRSRSAKLRAGMRTVE 319 R+ SAKLRA + E Sbjct: 316 PRASSAKLRAVEKIAE 331 >gi|317178936|dbj|BAJ56724.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F30] Length = 308 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 G++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|8134813|sp|P73460|RSMH_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1652579|dbj|BAA17500.1| sll1144 [Synechocystis sp. PCC 6803] Length = 305 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 30/326 (9%) Query: 1 MESKSCKTMSSAIHH-TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 M +KS + M+ HV VL ++ L P PG LDAT GAGG+S K+G Sbjct: 1 MGAKSMEGMNLKQTAIADFHHVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGI 60 Query: 59 -SNVIALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 + +DRD A++ E ++ + +Q F+ + DG++ DLG Sbjct: 61 PLALTMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLG 118 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D GDRGFSF+ + PLDMRM S +A++++N + KDL RI GEE+ + R Sbjct: 119 VSSPQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRR 178 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA IV+ Q TT ++ + ++ RIHPATR+FQ LRI VN+E+ L + Sbjct: 179 IARQIVE--QRPFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKF 236 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 + A LK+GG ++SFHSLEDR+VK F + +TKK Sbjct: 237 IAQAPHWLKSGGKFGIISFHSLEDRIVKHRFRETEN-----------------LRVLTKK 279 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ +E+ N R+RSAKLR + Sbjct: 280 PIIAGEEEQRQNPRARSAKLRWAEKI 305 >gi|262276873|ref|ZP_06054666.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114] gi|262223976|gb|EEY74435.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114] Length = 329 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 173/331 (52%), Gaps = 8/331 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H PV+L +V L+ K+ILD TFG GGYS K S VIA+DRD Sbjct: 1 MSLDTIKHYPVMLREVTNFLS--DNKLILDCTFGGGGYSSEILKNYSNSKVIAIDRDIEI 58 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + Y ++F FS++ +D +FDLGVS Q+ RGFSF Sbjct: 59 IQFAKKLEKKYLKRFVFKNLKFSEIHKVKEINQIDYFIFDLGVSHFQLKDMKRGFSFSSD 118 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 L M M + + A +++ + + KDL IL GEEK AS+IA+ I+ R++ + + Sbjct: 119 DSLSMSMGLTDLDAEELIRKVSEKDLKNILKFFGEEKFASKIANKIINVRKNKNISSGKK 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ K N+ HP+T+SFQALR+ VN E+ E+ + L+ + K +I+V+F Sbjct: 179 LAEIIETVK--FKKNKTHPSTKSFQALRMIVNQELLEIYKSLKFIIENCKENSTIIIVTF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLED LVKK K R++ S+ + +T K + P E+V N SRSA Sbjct: 237 HSLEDLLVKKIINFYGKKTSTSRYLPQDSDIKKMPIKILTNKAIKPNSEEVNVNPSSRSA 296 Query: 310 KLRAGMRTVER-SIEDDSFVHLPRLPTLSQF 339 KLRA + + I + S + + + +L + Sbjct: 297 KLRAFTKICKPDFILNRSDLDMEKYFSLEEL 327 >gi|113869234|ref|YP_727723.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha H16] gi|123032664|sp|Q0K6L6|RSMH_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113528010|emb|CAJ94355.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 333 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 179/327 (54%), Gaps = 23/327 (7%) Query: 9 MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63 MS H VLL++ + L P V +D TFG GG+SR+ ++A Sbjct: 1 MSPTGTPATPALRHRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122 D+DP A++ +FS+ A+F+ + + V GV+ DLG+SS QID Sbjct: 61 FDKDPAAIAEAGTIK---DARFSIEHASFAAMAERLSGRGHVAGVLLDLGISSPQIDEAA 117 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM GI+A+ + QA+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRS 177 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P TT DL++L+ K V ++ PATR+FQALRI VN E+E+L +GL++A + Sbjct: 178 EPGDGGPIATTADLAALVAKAV-KTREKGQDPATRTFQALRIHVNQELEDLERGLKAAYE 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291 L+ GG L+V+SFHSLEDR+VK+F A+ + + ++ + + + Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318 P E+VA N R+RSA +R + Sbjct: 296 -YKPGPEEVAANPRARSAVMRVAEKLA 321 >gi|134102314|ref|YP_001107975.1| S-adenosyl-methyltransferase MraW [Saccharopolyspora erythraea NRRL 2338] gi|291003724|ref|ZP_06561697.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|262826346|sp|A4FLX5|RSMH_SACEN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|133914937|emb|CAM05050.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 119/310 (38%), Positives = 176/310 (56%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV++E+ + LL P V++DAT G GG+S + + + LDRDP A+ Sbjct: 19 HVPVMMERTLELLAPALSKGPAVVVDATLGMGGHSEALLAAHPELTLVGLDRDPDALRLA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ L A + + + + VDG +FDLGVSS+Q+D DRGF++ Sbjct: 79 GERLAPHSDRVHLVHAVYDEWAEALAGLSLSKVDGALFDLGVSSLQLDETDRGFAYAHDA 138 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A+DV+N + +LTR+L GEEK A+RIA AIV+ R APF + Sbjct: 139 PLDMRMDSGAPRTAADVLNTYSAGELTRVLREYGEEKFAARIAAAIVRERAKAPFDRSGR 198 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ V S+ HPA R+FQALRI VN E+E L + L +A +L GG ++V+S Sbjct: 199 LVELLYDAVPAASRRTGGHPAKRTFQALRIEVNAELEVLGRALPAALDSLAVGGRMVVMS 258 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ FA R+ V + H + +T+ + + + A N R+ S Sbjct: 259 YHSLEDRMVKRAFAERAKSKTPVDLPVELPGHGPEIRLLTRGAELASDAETAANPRAASV 318 Query: 310 KLRAGMRTVE 319 +LRA R E Sbjct: 319 RLRAAERIKE 328 >gi|145595735|ref|YP_001160032.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440] gi|262826474|sp|A4X9S3|RSMH_SALTO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145305072|gb|ABP55654.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440] Length = 371 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 177/313 (56%), Gaps = 14/313 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDP 68 G HVPVLLE+ + LL+PA + V +DAT G GG++ + ++ LDRD Sbjct: 6 GAHVPVLLERCLELLSPALDRTGQTGRTVYVDATLGLGGHAEAILTAHPRTMLVGLDRDT 65 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGF 125 A++ + + + ++ L A + +L D + VDG++FDLGVSS+Q+D DRGF Sbjct: 66 EALAHARVRLARFADRVHLEHAVYDELPDVLDRIGHPVVDGILFDLGVSSLQLDAPDRGF 125 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM G++A +VVN + +L R+L + GEEK ASRIA AIV+ R AP Sbjct: 126 AYAQDAPLDMRMDQSRGVTAEEVVNSYSHPELARVLRVYGEEKFASRIASAIVRERDRAP 185 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++ L+ L+++ + + HPA R+FQALRI VN E+ L L +A L G Sbjct: 186 ITSSAQLAELVRQAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLAIEG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+S+HSLEDRL K A R + + F+ +++ +P + +VA N Sbjct: 246 RMVVLSYHSLEDRLTKVALADRVRSKGPIDLPVELPGTGPTFRLLSRGAELPGEAEVAVN 305 Query: 304 RRSRSAKLRAGMR 316 R+ S +LRA R Sbjct: 306 PRAASVRLRAAER 318 >gi|308233784|ref|ZP_07664521.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae DSM 15829] gi|328943767|ref|ZP_08241232.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium vaginae DSM 15829] gi|327491736|gb|EGF23510.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium vaginae DSM 15829] Length = 319 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 172/310 (55%), Gaps = 12/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV+L +V L+ PG V+ D T G G++ + + + +D+D A+ E Sbjct: 7 HVPVMLTEVEQELSLKPGDVVCDCTLGGAGHTVALAQHVAPDGLSLGIDQDDAALKAASE 66 Query: 77 TMRDYKEQFSLF--QATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 M + + FSQL + + V D +FDLGVSS Q+D +RGFS+ + Sbjct: 67 RMDRLAPCVTYKFLKGNFSQLDNLLVQAQVIGVDAFLFDLGVSSPQLDVAERGFSYHEDA 126 Query: 132 PLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++V+ N DLTRIL G+EK A+RIAH IV++R+ +P +TT Sbjct: 127 PLDMRMDPRNNTLTAAEVIQTYNEADLTRILRSYGDEKFAARIAHVIVEQRKLSPIRTTL 186 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L ++++ + + + + HPA ++FQALRI VN+E++ L GL+ A + L GG + ++ Sbjct: 187 ELVEVVKRAIPAAARRHGKHPARKTFQALRIEVNHELDVLETGLKQAIRWLNPGGRICII 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLED+LVK + + + V +TKK +V T +V N R+R Sbjct: 247 AYHSLEDKLVKHILSEYAQGCVCPADFPVCVCGRKPVLDILTKKPLVATPSEVECNPRAR 306 Query: 308 SAKLRAGMRT 317 SA LRA RT Sbjct: 307 SALLRAARRT 316 >gi|126654823|ref|ZP_01726357.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110] gi|126623558|gb|EAZ94262.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110] Length = 304 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 105/301 (34%), Positives = 154/301 (51%), Gaps = 25/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVL ++VI L P LDAT G GG+SR + V +D D A++ Q+ Sbjct: 16 HTPVLCQEVIEGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVTGIDLDGEAIATTQDN 75 Query: 78 MRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + +F ++Q F+ +G++ DLGVSS Q D +RGFSF+ LDMR Sbjct: 76 LSEIAENRFQVWQGNFADYPGETAQ--FNGILADLGVSSPQFDVPERGFSFRHEAVLDMR 133 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ ++A++++N + L + GEE+++ IA IV+ Q TT+ ++ Sbjct: 134 MNREQSLTAAEIINHWDQTSLADLFYQYGEERRSRPIARRIVQ--QRPFETTTELAEAIA 191 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + RIHPATR FQALRI VN+E+ L + L A LK GG + ++SFHSLED Sbjct: 192 KCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSLED 251 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK F + +TKK ++ E+ N RSRSAKLR Sbjct: 252 RRVKYSFRDSL-----------------LLDVVTKKPMIAQPEEREKNPRSRSAKLRFAQ 294 Query: 316 R 316 R Sbjct: 295 R 295 >gi|325519765|gb|EGC99070.1| 16S rRNA m(4)C1402 methyltranserfase [Burkholderia sp. TJI49] Length = 313 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLGPGGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IGDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHAV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I + P + +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPGEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|332528826|ref|ZP_08404800.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC 19624] gi|332041685|gb|EGI78037.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC 19624] Length = 320 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 114/319 (35%), Positives = 171/319 (53%), Gaps = 19/319 (5%) Query: 19 DHVPVLLEKVIALLNPAP----------GKVILDATFGAGGYSRSFCKMGS---NVIALD 65 H VLL + + L P +DATFG GG+SR + + A D Sbjct: 6 THTTVLLNEAVDALLNRPVELPDSLKTEDGHYVDATFGRGGHSRLLLSRLAPQARLTAFD 65 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP AV+ Q+ ++ +FS+ F+ L + GV+ DLG+SS QID RGF Sbjct: 66 KDPQAVAEAQKIVQS-DARFSIRHQGFAHLNELPTQ-SCQGVLMDLGISSPQIDDPARGF 123 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM G S ++ + A V+++ ++ GEE+ A IA AIV+RRQ+ Sbjct: 124 SFRAEGPLDMRMDPTRGRSVAEWLMSAEVREIAEVIRDYGEERFAGPIAKAIVERRQAGR 183 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + + ++ +PATR+FQA RIF+N E+EEL L ++ L+ GG Sbjct: 184 PLATTAELAQLVAGAVKTREPGQNPATRTFQAFRIFINAELEELQAALEASLDVLQTGGR 243 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F A + +V R + P +++ + V P++ +VA N Sbjct: 244 LVVISFHSLEDRIVKQFIARHAREV-YDRRAPFAAPTPTRLRAVER--VRPSEAEVAANP 300 Query: 305 RSRSAKLRAGMRTVERSIE 323 R+RSA +R +RT E Sbjct: 301 RARSAIMRVAVRTDAEREE 319 >gi|294338811|emb|CAZ87145.1| S-adenosyl-dependent methyl transferase MraW [Thiomonas sp. 3As] Length = 317 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 165/317 (52%), Gaps = 12/317 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ + H VLL + + L P V LDATFG GG+SR + +IA+DR Sbjct: 4 TTPMPSAETAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 DP A+ + + +F + A FS+ + ++ DG++FDLGVSS Q+D +R Sbjct: 64 DPQAIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPER 120 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM SG + ++ + A+V ++ +L G+E+ A +IA IV RR + Sbjct: 121 GFSFRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDA 180 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + + + S+ PATR+FQALRI VN E+ ++ L L+ G Sbjct: 181 GAPLARSGELAALVASAVKSREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDV 300 G L V+SFHSLED L+K+F + R A FQ K+VV P+ ++ Sbjct: 241 GRLAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAEI 300 Query: 301 AFNRRSRSAKLRAGMRT 317 + N RSRSA LR R Sbjct: 301 SGNARSRSAMLRVAQRV 317 >gi|317180415|dbj|BAJ58201.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F32] Length = 308 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 G++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|325001098|ref|ZP_08122210.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudonocardia sp. P1] Length = 337 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H PVLLE+V ALL P P V +DAT G GG++ + + + LDRDP A+ Sbjct: 16 HTPVLLERVSALLAPAIADRP-AVYVDATLGMGGHAAALLATHPQLTVVGLDRDPQALDL 74 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y ++ A + ++ + + + D ++FDLGVSS+Q+D +RGFS+ + Sbjct: 75 AGRRLTAYADRLRPVHAVYDRIGEALDETGVGPADAILFDLGVSSLQLDEVERGFSYSRD 134 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + G +A+DV+N L RIL GEE+ A IA+AIV+ R PF + Sbjct: 135 ADLDMRMDPTTGPTAADVLNTYTAPQLRRILREYGEERFAGPIANAIVRNRDKRPFTRSA 194 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L L+ V S+ HPA R+FQALRI VN E++ L L +A AL GG ++V+ Sbjct: 195 ELVELLYGVVPAASRRTGGHPAKRTFQALRIEVNAELDVLRDALPAAFDALAPGGRIVVL 254 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+ K+ A R+ + + H F+ +T+ + +++ N R+ Sbjct: 255 AYHSLEDRITKRALAERTRSRTPLDLPVELPGHEPEFRLLTRGAETASDDEIERNPRAAP 314 Query: 309 AKLRAGMRT 317 +LRA RT Sbjct: 315 VRLRAAERT 323 >gi|88704092|ref|ZP_01101807.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71] gi|88701919|gb|EAQ99023.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71] Length = 308 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + + L +P + +D TFG GG+SR + + A D+ Sbjct: 1 MAASHETVLLHEAVDALVGSPAGLYVDGTFGRGGHSREILRRLDNQGRLFACDK-DEEAE 59 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++FS + +F+ L ++ ++ VDG++ DLGVSS Q+D +RGFSFQ+ Sbjct: 60 RDAEELLAGDDRFSFARGSFAALPAFLEERGLGAVDGILLDLGVSSPQLDQAERGFSFQQ 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+D + A +++ +L GEE+ A RIA AIVK R P T Sbjct: 120 DGPLDMRMDRSRGESAADWIAAAPEQEIIDVLREYGEERYARRIAAAIVKARSEKPLTRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+S++ + + ++ HPATRSFQA+RI VN E+++LA+ L A L GG L+V+ Sbjct: 180 AQLASIVSEAHPRWEKHK-HPATRSFQAIRIRVNRELDDLAELLSLALSVLAVGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK+ S R + + V + K V + ++VA N RSRS Sbjct: 239 SFHSLEDRLVKRHLRDMSRGPQLPRDLPVRDVDVGVPMRLLGKAVRASDQEVAANPRSRS 298 Query: 309 AKLRAGMRTV 318 A +R + Sbjct: 299 AIMRCAEKIA 308 >gi|73542671|ref|YP_297191.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha JMP134] gi|88909215|sp|Q46WY6|RSMH_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72120084|gb|AAZ62347.1| methyltransferase [Ralstonia eutropha JMP134] Length = 332 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 179/327 (54%), Gaps = 23/327 (7%) Query: 9 MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63 MS H VLL++ + L P V +D TFG GG+SR+ ++A Sbjct: 1 MSPTGSPATPALRHRTVLLDEAVEALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122 D+DP A++ +FS+ +F+ + + V GV+ DLG+SS QID Sbjct: 61 FDKDPAAIAEAGTI---QDARFSIEHESFAAMGERLAGRGHVAGVLLDLGISSPQIDEAA 117 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM GI+A++ + QA +D+ R++ GEE+ A +IA AIV RR+ Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAEWLAQAEEQDIARVIRDYGEERFAVQIAKAIVARRR 177 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P TT DL++L+ K V ++ PATR+FQALRI +N E+E+L +GL++A Sbjct: 178 EPGDGGPLATTADLAALVAKAV-KTREKGQDPATRTFQALRIHINQELEDLERGLKAAYD 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291 L+ GG L+V+SFHSLEDR+VK+F A+ + + ++ + + + Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318 V P ++VA N R+RSA +R + Sbjct: 296 -VKPGAQEVADNPRARSAVMRVAEKLA 321 >gi|257056486|ref|YP_003134318.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM 43017] gi|256586358|gb|ACU97491.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM 43017] Length = 327 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 176/311 (56%), Gaps = 10/311 (3%) Query: 19 DHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H+PVL+++V+ L PA +++D T G GG++ + + I LDRDP A+ Sbjct: 15 THLPVLVDRVLELFEPAVSDRDAILVDTTLGLGGHTEALLSAYPRLRVIGLDRDPEALER 74 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y + + +++D + + V+GV+ DLGVSSMQ+D DRGF++ ++ Sbjct: 75 SRRRLARYGSRVQFVHTVYDRIRDVLAELDVPAVEGVLMDLGVSSMQLDRDDRGFAYARN 134 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + GI+A+DV+N +V +LTR+L GEE+ A RIA A+V R+ PF T++ Sbjct: 135 APLDMRMDPTTGITAADVLNTYSVDELTRVLRDYGEERFARRIAKAVVAERKREPFDTSE 194 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L L+ TV S+ HPA R+FQALRI VN E++ L + +A +L GG ++V Sbjct: 195 RLVRLLYATVPAGSRRTGGHPAKRTFQALRIEVNGELDILRAAVPAAIDSLAVGGRIVVE 254 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR+VK+ + + H + +T+ +E++ N R+ S Sbjct: 255 SYHSLEDRIVKQALTRAATSRTPEGLPVELPGHGPKLRLLTRGAEKADEEEIRRNPRAAS 314 Query: 309 AKLRAGMRTVE 319 +LRA + E Sbjct: 315 VRLRAAEKRGE 325 >gi|158522805|ref|YP_001530675.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3] gi|263446302|sp|A8ZXX1|RSMH_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158511631|gb|ABW68598.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3] Length = 312 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 172/312 (55%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H V+ ++ +ALLN GK++ D T G GG++ + +I +D+DP A++ Sbjct: 1 MSFRHTSVMPDQAVALLNCEKGKIVADCTLGGGGHAVRIAEQILPEGLLIGIDKDPAALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + E+ + F+ + + VDGV+ DLG+S QID RGFSF+K Sbjct: 61 HAKQALSVFGERVLYVRGNFADFSEILSSLDIPAVDGVLLDLGLSFYQIDGSGRGFSFRK 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A+D+VNQ+ DL RI GEE+ ASRIA IV+ R+SAP T+ Sbjct: 121 DEPLDMRMDPDQSLTAADLVNQSAEADLVRIFREFGEERYASRIARRIVEARRSAPVTTS 180 Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ ++ + + +I PATR F ALRI VN E+E L + L + +K GG + Sbjct: 181 GQLARIVTDAYPAKERHTAKIDPATRVFMALRIAVNTELENLERFLDTVIDRIKPGGRIC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK+ + + S + + +T+K +VPT E+V N Sbjct: 241 VLSFHSLEDRMVKRRMKLWEKACVCPPGLPVCSCSKQRECRIVTRKALVPTAEEVQANPM 300 Query: 306 SRSAKLRAGMRT 317 +RS +LRA + Sbjct: 301 ARSVRLRAAEKV 312 >gi|283850522|ref|ZP_06367810.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B] gi|283574093|gb|EFC22065.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B] Length = 325 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 11/307 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H+PVLL +V+ L PG ILDAT G GG+ + + +V+ LDRD A+S Sbjct: 4 VPSHIPVLLREVVEFLAIRPGMRILDATAGLGGHIKGMLEAAGGEASVLGLDRDREALSE 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y ++ L + +S+ + + + VD + D G+SS+Q+D +RGF F Sbjct: 64 AGRRLEAYGDRVRLVRTRYSRFPAALAEAGWETVDAALLDAGMSSLQLDDPERGFGFLTD 123 Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA +VN A+ L I+ GE+ QA RIA AIV R++AP TT Sbjct: 124 GPLDMRMGVEDGGESAEGLVNLASFARLREIIREYGEDPQAGRIARAIVAERETAPITTT 183 Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ ++ R HPATR+FQALR+ VN+E+ EL + LR+ + GG + Sbjct: 184 RRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELGELEEFLRAIPGHIAPGGRVA 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDRLVK+ F + + R ++ H A F+ +TKK V+ +E+VA N R Sbjct: 244 VISFHSLEDRLVKRAFRLEATDCLCPREQIVCVCGHRARFRILTKKPVMAGEEEVAANSR 303 Query: 306 SRSAKLR 312 +RSAKLR Sbjct: 304 ARSAKLR 310 >gi|332297592|ref|YP_004439514.1| Ribosomal RNA small subunit methyltransferase H [Treponema brennaborense DSM 12168] gi|332180695|gb|AEE16383.1| Ribosomal RNA small subunit methyltransferase H [Treponema brennaborense DSM 12168] Length = 330 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 171/326 (52%), Gaps = 12/326 (3%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H PVLL++ + L+P ++D+T G GG+S +F S +I LD DP + Sbjct: 5 HTPVLLQECLDALSPVGEPFEREPFMIDSTLGEGGHSEAFLTKYSDLRIIGLDADPNIQA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + + + F+ P D ++FDLG+S + RGFSF++ Sbjct: 65 RAKERLAPFGSRMNFHLGWFNDFYANYPGDMPKPDLILFDLGISLFHYEKSGRGFSFRQD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMR++ G SA D+VN + L I I GEE+ + RIA AI + R + +T Sbjct: 125 EPLDMRLNPDAGPSAGDLVNSLSSAQLADIFYIYGEERYSRRIAAAIERERAQSKIETAA 184 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ ++V ++ IHPAT++FQALRI VN E+ L + L +A LK GG + V+ Sbjct: 185 ALADIVYRSVPAAYRHGAIHPATKTFQALRIAVNRELNRLPEALPAAFNVLKCGGKMGVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK +F + S + I + +T+K + P+ +VA N SR Sbjct: 245 TFHSLEDRIVKNYFRNLSKVCICPPEQPICICGGVPHAELLTRKPLGPSGAEVAVNSPSR 304 Query: 308 SAKLRAGMRTVERSIEDDSFVHLPRL 333 SAKLR + + S + + + + Sbjct: 305 SAKLRVIRKLRDISAQSAALIAPENV 330 >gi|119026127|ref|YP_909972.1| S-adenosyl-methyltransferase MraW [Bifidobacterium adolescentis ATCC 15703] gi|263445943|sp|A1A2F7|RSMH_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118765711|dbj|BAF39890.1| S-adenosyl-methyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 343 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 160/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 + H PVLL + L+ P PG + +D T G G+S +F K + +I +DRD Sbjct: 1 MTDVTTIHQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ + M ++F+ A F + D+ V+ V DLG+SS+QID + Sbjct: 61 TEALALATKRMEMEGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + +A V+ + + DL RI GEE+ + +IA IV+RR+ Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 TEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F + F+ +T+ + E++A Sbjct: 241 GGRLVVESYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 NNPRSASVRLRAVE 314 >gi|317484855|ref|ZP_07943747.1| MraW methylase [Bilophila wadsworthia 3_1_6] gi|316923901|gb|EFV45095.1| MraW methylase [Bilophila wadsworthia 3_1_6] Length = 355 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 113/325 (34%), Positives = 173/325 (53%), Gaps = 11/325 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 + H+ VLL + + L P G LD T G GG+S + + + LDRD Sbjct: 1 MPSPESVHISVLLNEAVDALAPKAGGRYLDGTVGMGGHSFAIMERTGGEGFLCGLDRDTQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + + ++ L +S+ + + VDG + D+GVSS+QID +RGFS Sbjct: 61 ALELARIRLAPFGDRVHLVHTRYSEFEAALDGIGWDAVDGALIDIGVSSLQIDSAERGFS 120 Query: 127 FQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 F GPLDMRM S +VN+A ++DL I+ GE+ QA RIA AIV+ R P Sbjct: 121 FSSDGPLDMRMDRDSEELPVSRLVNRAKLEDLKDIIERYGEDPQAGRIARAIVEARVRKP 180 Query: 185 FQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT +L++L+++ + + HPATR+FQALR+ VN+EI EL + L + LK G Sbjct: 181 IETTGELAALVERAYPAAWRAKARNHPATRTFQALRMAVNDEIGELERFLDTILGRLKPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+SFHSLEDR+VK + + + +H+ H +T K V P++ ++ Sbjct: 241 GRVAVISFHSLEDRVVKHRMKAWAQGCICPKHIPVCVCHHAPEALLVTPKPVCPSERELM 300 Query: 302 FNRRSRSAKLRAGMRTVERSIEDDS 326 N R+ SAKLR + + + D Sbjct: 301 LNPRAGSAKLRVAEKLDPHARKADE 325 >gi|94498181|ref|ZP_01304742.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58] gi|94422311|gb|EAT07351.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58] Length = 312 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 123/302 (40%), Positives = 178/302 (58%), Gaps = 7/302 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 LL++V+ L APG++ +D TFGAGGYS + + G+ V A DRDP A+ G+ + Sbjct: 2 LLDEVLDALAIAPGEIHVDGTFGAGGYSSAMAQAGARVFAFDRDPDAIREGRAVADAHGI 61 Query: 84 QFSL-FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 + +QL V GV D+GVSSMQ+D +RGFSFQ GPLDM MS G+ Sbjct: 62 TLIPGEFSRMAQLLTERDVDRVAGVTLDIGVSSMQLDRPERGFSFQSDGPLDMTMSQGGM 121 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA+D +N A +D+ ++ GEE ++ R+A AIV R P + T L+++++K + + Sbjct: 122 SAADFLNSAPEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTAQLAAVVRKALGYK 178 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG L +V+FHSLEDR+VK+F Sbjct: 179 PHDKKDPATRTFQAIRIHVNRELEELERGLEAAEALLEEGGRLAIVTFHSLEDRIVKQFL 238 Query: 263 ASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +RSG +P F K V ++A N R+RSA LR+ +RT Sbjct: 239 RNRSGGEGGGSRHLPERTAGPQPTFARPA-KAVRAGDAELARNPRARSATLRSAVRTAAP 297 Query: 321 SI 322 S Sbjct: 298 SR 299 >gi|188997242|ref|YP_001931493.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp. YO3AOP1] gi|262825725|sp|B2V5J5|RSMH_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188932309|gb|ACD66939.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp. YO3AOP1] Length = 293 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 180/308 (58%), Gaps = 22/308 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 + +H VL ++V+ G+V +DAT G GG+S K +I LD+D +A+ Sbjct: 1 MVEHYSVLHKEVLEFSKLIEGEVFVDATVGGGGHSYLILKQNLNLKLIGLDKDDYALKVA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E +++++++ +L +++F L + K ++G++FD GVS+ Q+ +RGFSFQ+ Sbjct: 61 KERLKEFEDRITLVKSSFKDLDKVLQSLQIKEINGILFDFGVSTFQLKL-ERGFSFQREE 119 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +A D+VN +DL I+ GEEK AS+IA +IV+ R+ +TT++ Sbjct: 120 FLDMRMDTTQKLTAYDIVNYYREQDLYNIIKTYGEEKFASKIAKSIVEYRKKKKIETTKE 179 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + ++ +IHPATR+FQA+RI VNNE++++ +GL A L G+++ +S Sbjct: 180 LADIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGIIMAIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F + +TKK + P+ E++ N SRSA Sbjct: 240 FHSLEDRIVKNMFKKY--------------KELKFLEILTKKPITPSDEEIKENPASRSA 285 Query: 310 KLRAGMRT 317 KLR G R Sbjct: 286 KLRVGRRI 293 >gi|220909120|ref|YP_002484431.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425] gi|263446188|sp|B8HTI9|RSMH_CYAP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219865731|gb|ACL46070.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425] Length = 294 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 167/303 (55%), Gaps = 26/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PVL + VI LN PG LDAT G GG+SR + V ALDRD A+ + Sbjct: 12 HIPVLSQAVIQGLNLRPGGHYLDATVGGGGHSRLILEAAPESQVTALDRDQQALQAARSA 71 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ Y E+ +Q+ F+ + DG++ DLGVSS Q+D RGFSF+ PLDMRM Sbjct: 72 LQPYGERVQFYQSNFADYES--GSLRFDGILADLGVSSAQLDQPQRGFSFRADAPLDMRM 129 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 ++A+++VN A+ ++L I GEE+ A RIA + Q P TT L+SL+ Sbjct: 130 DQRQSLTAAELVNTASAEELADIFYYYGEERFARRIA---RRIVQHRPLYTTAQLASLVS 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + S++ IHPATR FQALRI VN E+E L Q L + L GG L V+SFHSLEDR Sbjct: 187 RAL-PSRSQSIHPATRVFQALRIAVNRELESLEQFLERSPHWLVTGGRLAVISFHSLEDR 245 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK S + Q +TKK ++P+ E+++ N R+RSAKLR R Sbjct: 246 RVKHGLRDHS-----------------LLQVLTKKPILPSSEEISANPRARSAKLRLAQR 288 Query: 317 TVE 319 Sbjct: 289 LDA 291 >gi|320106390|ref|YP_004181980.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4] gi|319924911|gb|ADV81986.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4] Length = 319 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 159/313 (50%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74 HVPVL ++V+ LN G DAT G GG+S +I DRDP A++ Sbjct: 4 PQHVPVLYDEVLNFLNVRAGGTYADATLGLGGHSSGIARLLGAKGTLICFDRDPEAMTKA 63 Query: 75 QET-------MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + D FS+ +D + +DG++ D GVSS+Q+D RGFSF Sbjct: 64 KARFEALAVELGDTMPTVRFEPRAFSEAKDVIKPGSLDGLLADFGVSSLQLDEAHRGFSF 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G +A VVNQA+ ++L ++ G + R ++ P + Sbjct: 124 RFEGPLDMRMDTRSGETAEQVVNQADEEELANLIYEFG---EERRSRRIARAIVRARPIR 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ +I K+++IHPATR+FQALRI VN+E+ E+ L SA LK GG L Sbjct: 181 TTAELAKVISVAAPSMKSDKIHPATRTFQALRIRVNDELGEIRTLLESAPSLLKVGGRLA 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDRLVK + + I KK + ++++ N RS Sbjct: 241 VISFHSLEDRLVKDATRDGARDGIWN--------------LIEKKPITAGEDEIQRNPRS 286 Query: 307 RSAKLRAGMRTVE 319 RSAKLR R + Sbjct: 287 RSAKLRVAERIAD 299 >gi|159038986|ref|YP_001538239.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205] gi|262826354|sp|A8LX88|RSMH_SALAI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157917821|gb|ABV99248.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205] Length = 372 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 120/319 (37%), Positives = 178/319 (55%), Gaps = 11/319 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VI 62 M + G HVPVLLE+ + LL PA G+ V +DAT G GG++ + ++ Sbjct: 1 MGVDMGELRGAHVPVLLERCLELLAPALGRAGRTVYVDATLGLGGHAEAVLATHPQTMLV 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQID 119 LDRD A++ + + + ++ L A + +L D + VDG++FDLGVSS+Q+D Sbjct: 61 GLDRDTEALAHARVRLARFADRVHLEHAVYDELPDVLDRLGHPVVDGILFDLGVSSLQLD 120 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 DRGF++ + PLDMRM G++A +VVN DL R+L + GEEK A RIA AIV+ Sbjct: 121 APDRGFAYAQDAPLDMRMDQTRGLTAEEVVNTYPHPDLARVLRVYGEEKFAPRIASAIVR 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ P ++ L+ L+++T+ + HPA R+FQALRI VN E+ L L +A Sbjct: 181 ERERDPITSSARLAELVRQTIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALD 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G L+V+S+HSLEDRL K A R V + F+ +++ +P + Sbjct: 241 RLTIEGRLVVLSYHSLEDRLTKVALADRVRSKGPVDLPVELPGTGPTFRLLSRGAELPGE 300 Query: 298 EDVAFNRRSRSAKLRAGMR 316 +VA N R+ S +LRA R Sbjct: 301 AEVAMNPRAASVRLRAAER 319 >gi|161344767|ref|NP_440820.2| S-adenosyl-methyltransferase MraW [Synechocystis sp. PCC 6803] Length = 297 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 162/306 (52%), Gaps = 29/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 HV VL ++ L P PG LDAT GAGG+S K+G + +DRD A++ E Sbjct: 13 HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIPLALTMIDRDVQAIAAAMER 72 Query: 78 MRD-----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + +Q F+ + DG++ DLGVSS Q+D GDRGFSF+ + P Sbjct: 73 LQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLGVSSPQLDQGDRGFSFRHTAP 130 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +A++++N + KDL RI GEE+ + RIA IV+ Q TT Sbjct: 131 LDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIARQIVE--QRPFQTTTDLA 188 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + ++ RIHPATR+FQ LRI VN+E+ L + + A LK+GG ++SFH Sbjct: 189 EAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKFIAQAPHWLKSGGKFGIISFH 248 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F + +TKK ++ +E+ N R+RSAKL Sbjct: 249 SLEDRIVKHRFRETEN-----------------LRVLTKKPIIAGEEEQRQNPRARSAKL 291 Query: 312 RAGMRT 317 R + Sbjct: 292 RWAEKI 297 >gi|328948458|ref|YP_004365795.1| ribosomal RNA small subunit methyltransferase H [Treponema succinifaciens DSM 2489] gi|328448782|gb|AEB14498.1| Ribosomal RNA small subunit methyltransferase H [Treponema succinifaciens DSM 2489] Length = 340 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 170/311 (54%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H PVLL + + L+P ++D+T G GG+S +F K ++ LD D + Sbjct: 18 HTPVLLNECLKFLSPIGEPFEKDAFMIDSTLGEGGHSFNFLKKFPTLKILGLDADSVIQA 77 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + ++ E+ + F+ +Y ++ D ++FDLG+S + RGFSF+ Sbjct: 78 RAKERLSEFGERMKFYNGWFNDFYCNYSEERKPDLILFDLGISVFHYEKSGRGFSFRHDE 137 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMR++ + SA+D+VN+ +L ++ + +EK + RIA AIV R+S +T+ Sbjct: 138 ELDMRLNADTKESATDIVNEMPEDELANMIYLYSDEKYSRRIASAIVSARKSQKIVSTKA 197 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I V K IHPATR+FQALRI VN+E++ L + + +A L GG + V++ Sbjct: 198 LADIIFNAVPSKYKYGNIHPATRTFQALRILVNSELKRLPEAIHAAFNVLAPGGKIGVIT 257 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK +F + + + R + +T+K V P++E++ N SRS Sbjct: 258 FHSLEDRIVKNYFRNLGKQCVCPREFPECVCGGTPCAEILTRKPVEPSEEEIKANSPSRS 317 Query: 309 AKLRAGMRTVE 319 AKLR + + Sbjct: 318 AKLRVVRKLRD 328 >gi|239813918|ref|YP_002942828.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110] gi|263504487|sp|C5CNE6|RSMH_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239800495|gb|ACS17562.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110] Length = 307 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 164/308 (53%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL + + L + A +DATFG GG++R+ +IA D+D AV+ Sbjct: 6 THTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDAEAVA 65 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + D V GV+ DLGVSS QID RGFSF+ GP Sbjct: 66 EAARI---SDARFSIRHQGFRSLGELP-DASVAGVLMDLGVSSPQIDNPVRGFSFRFDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S +D + A ++ + ++ GEE+ A +IA AIV RRQ +T Sbjct: 122 LDMRMDTTRGESVADWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGAISTTSE 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQA RIF+N E+EEL Q L ++ L+ GG L V+SFH Sbjct: 182 LAELVAGTVKTREPGQNPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLAVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + +++ + + P+ +V N RSRSA L Sbjct: 242 SLEDRIVKQFIARHSKEV-YDRRAPFAAPKAMKLRALER--IKPSDAEVHGNPRSRSAIL 298 Query: 312 RAGMRTVE 319 R RT E Sbjct: 299 RVAERTQE 306 >gi|121595969|ref|YP_987865.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42] gi|263433389|sp|A1WC14|RSMH_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120608049|gb|ABM43789.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42] Length = 308 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 162/309 (52%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL++ + L AP +D TFG GG+SR + ++A D+D A+ Sbjct: 7 HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ FS L + V GV+ DLGVSS QID RGFSF+ GPL Sbjct: 67 AARI---TDARFSIRHQGFSHLGELPAA-SVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G S ++ + A + ++ GEE+ A IA AIV RR + Sbjct: 123 DMRMDTTRGQSVAEWLADAETAQIAEVIRDYGEERFAGPIAKAIVARRTERGPIASTAEL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I ++ +PATR+FQALRIF+N E+EEL Q L + L+ GG L+V+SFHS Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALEGSLHVLRPGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F A S +V R + P +++ + + P+ ++VA N R+RSA +R Sbjct: 243 LEDRIVKQFIAQHSKEV-YDRRAPFAPPQPMRLRALER--IKPSTDEVAANARARSAVMR 299 Query: 313 AGMRTVERS 321 RT + Sbjct: 300 VAERTEVPA 308 >gi|88801293|ref|ZP_01116821.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P] gi|88781951|gb|EAR13128.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P] Length = 299 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 13/303 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL++ + L + +D TFG GG+S+ + D+DP A+ Sbjct: 1 MKYHSPVLLKESVDALAIKENGIYVDVTFGGGGHSKEILSRLGDSGRLFGFDQDPDALEN 60 Query: 74 GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + + S+ + K VDG++ DLGVSS Q D DRGFS + G Sbjct: 61 ---IIEDARFTLIPENFRYISRFLRFHGVKKVDGILADLGVSSHQFDEADRGFSTRFDGD 117 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +V+ + + L IL + GE + + IA IV++RQ +T+ L Sbjct: 118 LDMRMNQKSKVSAKEVIGTYSEEKLAEILFLYGELRNSRNIAKTIVEKRQEEKIETSFQL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +QK + + ++I + FQA+RI VN E+E L + L LK G L V+S+H Sbjct: 178 KEALQKYLPNAVEHKI--LAQIFQAVRIEVNEELEVLKEFLLQTPNLLKEKGRLSVISYH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + + P K++VP ++V N R+RSAKL Sbjct: 236 SLEDRLVKRFIRTGLFIGEPEKDFFGNIEVPMQ---KVGKLIVPDAKEVKVNNRARSAKL 292 Query: 312 RAG 314 R Sbjct: 293 RIA 295 >gi|296134857|ref|YP_003642099.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12] gi|295794979|gb|ADG29769.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12] Length = 311 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 163/314 (51%), Gaps = 12/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL + + L P V LDATFG GG+SR + +IA+DRDP Sbjct: 1 MPSAESAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + +F + A FS+ + ++ DG++FDLGVSS Q+D +RGFS Sbjct: 61 AIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFS 117 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ GPLDMRM SG + ++ + A+V ++ +L G+E+ A +IA IV RR + Sbjct: 118 FRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAP 177 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + + + S+ PATR+FQALRI VN E+ ++ L L+ GG L Sbjct: 178 LARSGELAALVASAVKSREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGRL 237 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDVAFN 303 V+SFHSLED L+K+F + R A FQ K+VV P+ +++ N Sbjct: 238 AVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAEISGN 297 Query: 304 RRSRSAKLRAGMRT 317 RSRSA LR R Sbjct: 298 ARSRSAMLRVAQRV 311 >gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510] gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510] Length = 324 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 130/292 (44%), Positives = 175/292 (59%), Gaps = 7/292 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PVLL++VIA L P G + +D TFGAGGYSR+ + VI +DRDP A+ G+ Sbjct: 7 HIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIERGRVLA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +++ + + + F + + VDGV D+GVSS QID +RGFSF+ GPLDM Sbjct: 67 QEFPGRLDVIEGRFGDMDQLLARHGVDRVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVVN A+ +L IL LGEE+ A R+A AIV R+ AP + T L+ +I Sbjct: 127 RMGRDGPTAADVVNGADEGELADILYHLGEERMARRVARAIVAARREAPIERTARLADII 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V K + I PATRSFQALRI VN+E+ EL +GL +AE L GG L VVSFHSLED Sbjct: 187 RSVVPKGKGDGIDPATRSFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304 R VK F RS + P AH F+ +++K V P++ + N Sbjct: 247 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPSFRLLSRKPVDPSEAEARNNP 298 >gi|171742509|ref|ZP_02918316.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC 27678] gi|283456404|ref|YP_003360968.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium Bd1] gi|306822422|ref|ZP_07455800.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC 27679] gi|309802480|ref|ZP_07696586.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium JCVIHMP022] gi|171278123|gb|EDT45784.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC 27678] gi|283103038|gb|ADB10144.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium Bd1] gi|304553967|gb|EFM41876.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC 27679] gi|308220880|gb|EFO77186.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium JCVIHMP022] Length = 343 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 162/314 (51%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H PVLL + + L+ P PG V +D T G G+S +F K +I +DRD Sbjct: 1 MTDVTTIHQPVLLRECVDLVAPALAKPGAVAVDCTLGLAGHSTAFLKASPEARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122 A++ M E+F A F + + D+ +D V DLG+SS+QID + Sbjct: 61 VEALALATRRMEQEGLAERFIPVHAAFDEFAHVLEDRNIDVVDAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + +A V+++ + DL RI GEE+ + +IA IV+RR+ Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 TEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F A + + F+ +T+ + + ++A Sbjct: 241 GGRLVVESYHSLEDKTVKTFMAQGLKADVPADMPVIPPDMQPFFKELTRGAIKADETEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 MNPRSASVRLRAVE 314 >gi|284929250|ref|YP_003421772.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A] gi|284809694|gb|ADB95391.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A] Length = 298 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 158/303 (52%), Gaps = 25/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ-E 76 H+PVL +++I L PG + LDAT G GG+S N VI +D D A+ + Sbjct: 16 HIPVLSQELIEGLAIKPGGIYLDATLGRGGHSNLILSTFPNVQVIGIDLDDDAILNTKTN 75 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 K++F + F + + DG++ DLGVSS Q+D +RGFSF+ LDMR Sbjct: 76 MSSSMKQRFQTWAGNFKDYPGKIEE--FDGIIADLGVSSPQLDNPERGFSFRHEASLDMR 133 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ ++A +++N + L I GEEK++ IA +V+ F TT S++ Sbjct: 134 MNREQSLTAEEIINHWSEITLANIFYQYGEEKRSRSIARYLVE--NRPFFTTTDLASAIS 191 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + RIHPATR FQALRI VN+E+ L + L+ + LK G + ++SFHSLED Sbjct: 192 KVFPPKYRYGRIHPATRVFQALRIIVNDELTSLEKFLQQSPSWLKPQGNIGIISFHSLED 251 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F S + ITKK ++P QE+ NRRSRSAKLR Sbjct: 252 RIVKHTFRDSS-----------------LLDVITKKPIIPKQEEKYNNRRSRSAKLRFAK 294 Query: 316 RTV 318 R Sbjct: 295 RKN 297 >gi|167912660|ref|ZP_02499751.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 112] Length = 313 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRLDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E A D V GV+ DLGVSS Q+D RGFSF+ +GPLDMR Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + ++ + + + + P +VA N R+RSA Sbjct: 246 SLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRARSA 303 Query: 310 KLRAGMRTV 318 +R R Sbjct: 304 VMRIAERVA 312 >gi|332673556|gb|AEE70373.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 83] Length = 308 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 ++A ++N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGDLNAQKIINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|260220007|emb|CBA27114.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Curvibacter putative symbiont of Hydra magnipapillata] Length = 311 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 164/311 (52%), Gaps = 21/311 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKV---------ILDATFGAGGYSRSFCKMG---SNVIALDR 66 H VLL + + L + G +DATFG GG+SRS +IA DR Sbjct: 6 THTTVLLNEAVDAL-FSDGGTPFDAASLATYVDATFGRGGHSRSILSRLDASGRLIAFDR 64 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP AV+ +FS+ FS L +P V GV+ DLGVSS QID +RGFS Sbjct: 65 DPEAVAQAALI---TDPRFSIRHEGFSNLG-VLPSGSVGGVLMDLGVSSPQIDSPERGFS 120 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ GPLDMRM G S + + A + + ++ GEE+ A IA AIV RRQ Sbjct: 121 FRFEGPLDMRMDTTRGESVAQWLETAEINQIAEVIREYGEERFAGSIAKAIVARRQERGP 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T + + ++ +PATR+FQA RIF+N E+EEL Q L ++ + L+ GG L Sbjct: 181 ISTTSELAQLVADTVKTREPGQNPATRTFQAFRIFINAELEELQQALDASLEVLQPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK+F A S + R + +++ + + P+ E+VA N R Sbjct: 241 AVISFHSLEDRIVKQFIAKHSKE-EYDRRAPFAAPKVMKLKALGR--IKPSAEEVAANPR 297 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 298 SRSAILRVAQR 308 >gi|291229752|ref|XP_002734836.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 377 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 125/336 (37%), Positives = 177/336 (52%), Gaps = 30/336 (8%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 +H H+PV+L+ V+ +P +V +D TFGAGG+S K N+ ALDRDP Sbjct: 41 TVHSNEQLHIPVMLDDVLDFFSPEKNQVYIDMTFGAGGHSSEILKCAENITMYALDRDPL 100 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRG 124 A+ ++ + + + FS++ + VDGV+ D G SSMQ+D +RG Sbjct: 101 ALDIAKQLSGLHGNRIIPLEGKFSEITRLLDQHDVGLNSVDGVLLDAGCSSMQMDTAERG 160 Query: 125 FSFQKSGPLDMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 FS K GPLDMRM +A+DVVN + DL +I+ GEEK A +IA +IV+ R Sbjct: 161 FSISKDGPLDMRMDSDRDPKQPTAADVVNALSEADLAKIIRTYGEEKHARKIARSIVEYR 220 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRI---------HPATRSFQALRIFVNNEIEELAQG 231 + TT + + + + + H AT++FQALRIFVNNE+ EL G Sbjct: 221 TTWQPITTTKEFAYVVSCAFSHREAKKQKDKLRRPVHTATKTFQALRIFVNNELNELVMG 280 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAV--------RHMIPSNAH 281 L EK LK GG L V++FHSLEDR+VK+F S K R + Sbjct: 281 LEQVEKILKPGGKLAVITFHSLEDRIVKRFLRGIDYSEKYSMSIGEKMRENRTRDGDDNR 340 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 P ++ I KKV+ P +ED+ N R+RSAKLR ++ Sbjct: 341 PQRWKEINKKVLEPLEEDIIDNPRARSAKLRTAVKI 376 >gi|221202506|ref|ZP_03575536.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M] gi|221208172|ref|ZP_03581177.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2] gi|221172075|gb|EEE04517.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2] gi|221177601|gb|EEE10018.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M] Length = 313 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 164/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 MADARFSIVHDSFASMRGALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T +L Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I + P++ +V N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVVANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|107021630|ref|YP_619957.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia AU 1054] gi|123245314|sp|Q1BZH1|RSMH_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|105891819|gb|ABF74984.1| methyltransferase [Burkholderia cenocepacia AU 1054] Length = 313 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVCVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 A+ + V GV+ DLGVSS Q+D RGFSF+ GPLDMR Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQDL 191 M G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT +L Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V ++ PATR+FQA+RI VN E+ +L L +A L+ GG L+V+SFH Sbjct: 187 AQIVGHVV-KTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + R + + + I++ P++ +VA N R+RSA Sbjct: 246 SLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRARSA 303 Query: 310 KLRAGMRT 317 +R R Sbjct: 304 VMRIAERV 311 >gi|223040364|ref|ZP_03610639.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267] gi|222878322|gb|EEF13428.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267] Length = 310 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 158/303 (52%), Gaps = 6/303 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 HVPVLL++V+ VI+D T G GG+S + + N+IA D+D A++ Sbjct: 1 MNSPHVPVLLDEVLRAFEGIKSGVIVDCTLGYGGHSGAILEQNQNVNLIACDQDEEAINF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E ++ + ++ +F++ FS++ + + + G++ D+GVSS+Q+D +RGF + Sbjct: 61 SSERLKKFGQRAQIFKSKFSEILNKIEQTQIRGILADIGVSSLQLDKNERGFGLKSENLD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 + + SA DVVN + ++L RI GE ++ A IV+ RQ+ ++ + L+ Sbjct: 121 MRMDAQAKFSAYDVVNSYSARELERIFEGYGELPNPAKFAAKIVEARQNGEIKSAERLAQ 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + + AT +FQA+RI VNNE+ EL L+ E + ++ ++ FHSL Sbjct: 181 IIG--LKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQGIEDSQIDECVVAIIGFHSL 238 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK F + + + A+ + ++KK + P+ +V N RS AK+ Sbjct: 239 EDRIVKNKFKQWAQSCICPPQALKCTCGGDNALGKIVSKKAITPSAAEVKANPRSSCAKM 298 Query: 312 RAG 314 R Sbjct: 299 RIF 301 >gi|326693783|ref|ZP_08230788.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc argentinum KCTC 3773] Length = 313 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + +HV VLL + +ALL+ P + +DAT G GG++ K + + D+D A+ Sbjct: 2 SEFEHVTVLLHEAVALLDIKPDGLYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D + L F L+ + ++ VDG+V+DLGVSS+Q D G RGFS+ Sbjct: 62 NTKQYADEIAAGKLVLIHQNFRTLKSALAERGVTAVDGIVYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM +A +VN DL RIL GE++ +IA I + R++ P T Sbjct: 122 YDAELDMRMDQRQTLTAKTIVNDWPFNDLLRILSRYGEDRFPKQIARKIEQHRENGPINT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L A L G + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIDLLAPDGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLEDRLVK+ F ++ + A + +T+K ++P Q+++A N R Sbjct: 242 VITFQSLEDRLVKQMFREKTTAPELPAGLPVLPGQFEADYTLLTRKPILPGQDEMADNHR 301 Query: 306 SRSAKLRAGMR 316 S SAKLR R Sbjct: 302 SESAKLRGIAR 312 >gi|238916664|ref|YP_002930181.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750] gi|263447037|sp|C4Z530|RSMH_EUBE2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238872024|gb|ACR71734.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750] Length = 315 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 164/311 (52%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLLE+ I LN P + +D T G G+S K G +I +D+D A++ Sbjct: 5 MEFKHKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSYQIAKRLTGGGRLIGIDQDADAIA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +++++E+ ++ + + + + + VDG++ D+GVSS Q+D RGF++ Sbjct: 65 AATERLKEFEERVTIVRNNYCNMDKVLDELGIDKVDGILLDIGVSSYQLDTASRGFTYNV 124 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ++A D+VN + +L RI+ GE++ A IA IV R+ P +TT Sbjct: 125 DTALDMRMDQRQEMTAKDLVNTYSEMELFRIIRDYGEDRFAKNIAKHIVAARKEKPIETT 184 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I+ ++ + HP+ R++QA+RI +N E++ L + L G L + Sbjct: 185 FELNEIIKASIPAKVRATGGHPSKRTYQAIRIELNRELDVLENSIDMMIDRLNPQGRLCI 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + IT+K +VP E++ N+RS Sbjct: 245 ITFHSLEDRIVKARFRNNENPCTCPPDFPVCVCGKKSKGKVITRKPIVPGDEELNENQRS 304 Query: 307 RSAKLRAGMRT 317 +S+KLR R Sbjct: 305 KSSKLRVFERI 315 >gi|297181413|gb|ADI17602.1| predicted s-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [uncultured delta proteobacterium HF0130_19C20] Length = 314 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H+ VL ++V+ P+P + ILD T G GG+S + + +DRD AV Sbjct: 4 HFRHISVLQKEVVDFAPPSP-QTILDCTLGGGGHSYKLLEKYPKASLYGIDRDSIAVKAA 62 Query: 75 QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++++++Q L A+FS+L D + D ++ D+GVSS QI C +RGFSF G Sbjct: 63 DQRLQNFRKQTCLIHASFSELPAMIDKWGNPIFDYIIADIGVSSEQISCPERGFSFLNEG 122 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A ++VN AN +L IL GEE+ A RI I+ R+ F+TT Sbjct: 123 PLDMRMDPERQHLTAENIVNNANEHELVNILRNFGEERFARRIVSTILVERRKKKFRTTL 182 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ L++ + + +PAT++FQALRI VNNE+ EL L + K LK G + V+ Sbjct: 183 ELAELVKNVIPNKMRKRGFNPATKTFQALRIAVNNELLELTTLLENVPKFLKNSGRMAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+ F + + + + +T++ V ++E++A N RSR Sbjct: 243 SFHSLEDRIVKQKFRKWENPCVCPTDLPYCVCGGIPLGKVLTRRQVKASKEEIAKNPRSR 302 Query: 308 SAKLRAGMRT 317 SA LR + Sbjct: 303 SAHLRVFTKI 312 >gi|15616841|ref|NP_240054.1| hypothetical protein BU224 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681595|ref|YP_002467981.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471280|ref|ZP_05635279.1| hypothetical protein BaphL_01110 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387278|sp|P57319|RSMH_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|254813207|sp|B8D922|RSMH_BUCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25302081|pir||D84956 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10038905|dbj|BAB12940.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624438|gb|ACL30593.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 312 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 123/316 (38%), Positives = 189/316 (59%), Gaps = 20/316 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 ++H I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP Sbjct: 1 MNH-IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQNGRLYSIDRDPI 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125 A S G E +F + FS+L D+ ++ + +G++FDLGVSS+QID RGF Sbjct: 60 AFSIGSEIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGF 116 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q Sbjct: 117 SFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKK 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG Sbjct: 177 ITSTLELANIIKKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299 + ++SFHSLEDRLVKKF S K + M + + I + ++PTQ + Sbjct: 236 ISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNE 293 Query: 300 VAFNRRSRSAKLRAGM 315 + N R+RS+ LR Sbjct: 294 INNNPRARSSVLRIAE 309 >gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum WSM2075] gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum WSM2075] Length = 338 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 138/287 (48%), Positives = 190/287 (66%), Gaps = 3/287 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L PA G +I+D TFGAGGY+++ G++V+A+DRDP A++ G++ Sbjct: 16 ARHIPVLLGEVLEALAPAEGDIIIDGTFGAGGYTKAILATGASVVAIDRDPDAIAAGRDL 75 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L QA FS L + + VDGVV D+GVSSMQ+D +RGFSF+ GPLDMRM Sbjct: 76 EAQSGGRLRLVQAPFSTLDE--HAESVDGVVLDIGVSSMQLDQAERGFSFRNDGPLDMRM 133 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + +G+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L+ I+ Sbjct: 134 AQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIET 193 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+ Sbjct: 194 HIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRI 253 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VK+F A R+ RH+ + A A F+ V P ++A N Sbjct: 254 VKRFIADRADTASGSRHLPEAQARSATFRKDGGG-VTPGDAEIAANP 299 >gi|119478644|ref|ZP_01618547.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448421|gb|EAW29672.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 291 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 165/291 (56%), Gaps = 9/291 (3%) Query: 35 APGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P V +D TFG GG+SR +++ +D+DP A++ G E + E+F + + Sbjct: 3 RPAGVYVDGTFGRGGHSRRILTKLDAMGHLLGIDKDPQAIATGNE-LAVIDERFEIVHGS 61 Query: 92 FSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDV 147 F++ L +G+DGV+ DLGVSS Q+D RGFSF + GPLDMRM+ G+SA++ Sbjct: 62 FAETLELIRLRWPQGIDGVLLDLGVSSPQLDQSQRGFSFLRDGPLDMRMNTDAGMSAAEW 121 Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207 V A ++ R+L GEE+ A R+A AI+K R ++P +TT L+ ++ + + + Sbjct: 122 VATATESEIARVLKEFGEERFAKRMARAIIKERMASPIETTLHLAKVVAEAHPAWERGK- 180 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPAT++FQA+RI++NNE+ +L Q L A L GG L+V+SFHSLEDR+VK+F Sbjct: 181 HPATKAFQAIRIYINNELGDLRQFLDQALDVLNIGGRLVVISFHSLEDRMVKRFIRHHVR 240 Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 ++ + K V + E++ N RSRSA +R + Sbjct: 241 GDQLPANLPVTVDQLNRRLRQVGKAVKASAEEIDGNSRSRSAIMRVAEKIA 291 >gi|256788289|ref|ZP_05526720.1| hypothetical protein SlivT_27704 [Streptomyces lividans TK24] Length = 309 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 179/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + + ++ALDRD A+ E + Sbjct: 1 MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 121 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A +++ GG + V+S+HSL Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AERIRE 306 >gi|21220572|ref|NP_626351.1| S-adenosyl-methyltransferase MraW [Streptomyces coelicolor A3(2)] gi|289772183|ref|ZP_06531561.1| methylase MraW [Streptomyces lividans TK24] gi|20139275|sp|Q9S2W4|RSMH_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|5689964|emb|CAB52001.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289702382|gb|EFD69811.1| methylase MraW [Streptomyces lividans TK24] Length = 310 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 179/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + + ++ALDRD A+ E + Sbjct: 2 MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 62 APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 122 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 181 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A +++ GG + V+S+HSL Sbjct: 182 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 242 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301 Query: 314 GMRTVE 319 R E Sbjct: 302 AERIRE 307 >gi|194337867|ref|YP_002019661.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme BU-1] gi|262824772|sp|B4SHF1|RSMH_PELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194310344|gb|ACF45044.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 163/318 (51%), Gaps = 19/318 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVL+ +V+A L P + +D T G GG+S + + GS +I +D+D A+ Sbjct: 9 HEPVLVNEVVAFLVRKP-GIYVDGTLGGGGHSSAMLRALFDAGFLAGSLLIGIDQDDAAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 ET++++ L + F + + + V G++ DLGVSS QI+ DR Sbjct: 68 RVAGETLKEFAASTVLVKGNFCDMGGLIASICAEKGLEPKVMGILLDLGVSSFQINTPDR 127 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + GPLDMRM + SA+D+VN + ++L R+ GEE ++ IA AIV RQ Sbjct: 128 GFSYLREGPLDMRMDSNASRSAADIVNGYDEQELARLFYRYGEEPRSRSIARAIVAYRQK 187 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T + I + I +R FQALRI VN E++ L Q L L Sbjct: 188 HGAVTYTQELAAIIRGNAHGGEKVIKTLSRVFQALRIEVNAELDVLRQALYDGIDCLDET 247 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301 G + ++S+HSLEDR+VK+ FA ++ + + + +T+K ++ +++A Sbjct: 248 GRMAIISYHSLEDRIVKRVFAEKARSDWGPKGVGLREPLSWGSVAPVTRKPLIAAPDEIA 307 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RSAKLR + E Sbjct: 308 LNSRARSAKLRVIEKIHE 325 >gi|188527446|ref|YP_001910133.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470] gi|226709922|sp|B2UTC1|RSMH_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188143686|gb|ACD48103.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470] Length = 308 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ + DK + GV+ DLGVSS+Q+D RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALEMHDKEIKGVLVDLGVSSLQLDDDSRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKEAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|261855063|ref|YP_003262346.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus c2] gi|261835532|gb|ACX95299.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus c2] Length = 317 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 168/323 (52%), Gaps = 19/323 (5%) Query: 9 MSSAIHHTIGD-----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60 M++ T H VLL + + L V LDATFG GG+S + Sbjct: 1 MNALAVSTQEKSEALTHETVLLNEAVEALAVRADGVYLDATFGRGGHSAAILAKLNNHGR 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSM 116 + A DRD A++ E + +F + A FS ++ VDGV+FDLGVSS Sbjct: 61 LFATDRDLRALA-AGEALASKDARFQIHHAAFSTAAQWLASMGLQGKVDGVLFDLGVSSP 119 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 QID +RGFSFQ++GPLDMRM+ G +A++ + +A +++ +L LG+EK + RIA Sbjct: 120 QIDEAERGFSFQQNGPLDMRMNQHAGETAAEWLAEAEEEEIANVLYRLGDEKFSRRIARR 179 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 IV+ R + P TT DL I + ++ R HPATRSFQA+R+ +N E++E++ L Sbjct: 180 IVETRAAQPLATTFDLVRCIVEAT-PRRDPRKHPATRSFQAIRLHINRELDEISAALSQV 238 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L GG L+V+SFHSLEDR+VK F S + A + + Sbjct: 239 VDLLSIGGRLVVISFHSLEDRIVKNFIRDES---TTDKDFFGQPVGTARLSRV-GGSIRA 294 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + E++ N RSRSA +R R Sbjct: 295 SAEEIVRNPRSRSAIMRVAERVA 317 >gi|94312067|ref|YP_585277.1| S-adenosyl-methyltransferase MraW [Cupriavidus metallidurans CH34] gi|123259838|sp|Q1LIL8|RSMH_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|93355919|gb|ABF10008.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Cupriavidus metallidurans CH34] Length = 325 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 120/331 (36%), Positives = 185/331 (55%), Gaps = 23/331 (6%) Query: 9 MSSAIHH--TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63 MS T H VLL++ + L P +D TFG GG+SR+ ++A Sbjct: 1 MSPTESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVA 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGD 122 D+DP A++ +FS+ A+F+++ D V GV+ DLG+SS QID Sbjct: 61 FDKDPAAIAEAGTIK---DARFSIEHASFAEMGDRLAGRGPVAGVLLDLGISSPQIDEAA 117 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM GI+A++ + QA+ +D+ R++ GEE+ A +IA AIV RR+ Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAEWLAQADEQDIARVIRDYGEERFALQIAKAIVARRR 177 Query: 182 SAPF----QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + TT DL++L+ K V ++ PATR+FQALRI++N E+E+L +GL++A + Sbjct: 178 ESGDGGALATTSDLAALVAKAV-KTREKGQDPATRTFQALRIYINQELEDLERGLKAAYE 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291 L+ GG L+V+SFHSLEDR+VK+F + + + ++ + + + Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMQAHARPERDADPALRRAPLRAADLPQPTMKLLGR- 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 P E+VA N R+RSA +R + E+S Sbjct: 296 -FKPGAEEVAGNPRARSAVMRVAEKLGEQSA 325 >gi|32490963|ref|NP_871217.1| hypothetical protein WGLp214 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173030|sp|Q8D2Y8|RSMH_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25166169|dbj|BAC24360.1| yabC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 309 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PV+L +VI + P +DATFG GG+SR +I +DRDP ++ Sbjct: 1 MHIPVMLNEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRDPKSIEFAC 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + FS++ Y + G++FDLG+S QI +RGFSF G Sbjct: 61 SIK---DRRLIPIHGNFSKILKYSIKYKIFGKVQGILFDLGLSFSQIKDSNRGFSFMHDG 117 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA + +N AN+KD++ ++ GEEK +I++ I K R+ TT++ Sbjct: 118 PLDMRMNNLHGISAKEWINNANIKDISFVIKEFGEEKFYKKISNVICKYRKIKNINTTKE 177 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +LI K + HPA RSFQA+RI++NNE++EL L K + G ++ +SF Sbjct: 178 LVNLINKA-CGYFYKKKHPARRSFQAIRIYINNELQELKLALNDIIKIISPKGRIVFISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR++KKF + S K + + + +++ K + P+++++ +N++SR Sbjct: 237 HSLEDRIIKKFIINNSRKKIYPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYNKKSR 296 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 297 SAILRFAEK 305 >gi|317182020|dbj|BAJ59804.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F57] Length = 308 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N + L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESDLNAQKVINYYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPLSFKCTCSNNYALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|156405687|ref|XP_001640863.1| predicted protein [Nematostella vectensis] gi|156227999|gb|EDO48800.1| predicted protein [Nematostella vectensis] Length = 378 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 127/350 (36%), Positives = 194/350 (55%), Gaps = 24/350 (6%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNV 61 S+ + S T H+PV+ + + L P G+V +DATFGAGG++ + V Sbjct: 18 SRRKRRFLSTQAETHTLHIPVMSRECLGFLAPKDGEVFVDATFGAGGHTCAILNSAKCKV 77 Query: 62 IALDRDPFAVSCGQ--ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVS 114 A+DRDP AV Q T +YK Q Q FS+L + + + G+ ++ D+G S Sbjct: 78 FAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKFSELFELLSNNGIKKESLDGMLLDIGPS 137 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS---------GISASDVVNQANVKDLTRILGILGE 165 SMQ D RGFS K GPLDMRM +A+DVVN + ++L +L G Sbjct: 138 SMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSRSSSFTAADVVNSISERELISVLRHYGG 197 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFV 221 E+ A+RI+ A++K R TT+ L++++ V F + +++ HPAT++FQALRI V Sbjct: 198 ERDAARISRAVIKARDREHIMTTRQLAAIVANAVGFGRKDKLNRFAHPATKTFQALRILV 257 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N+E+ EL + L++A+K L GG L+V+SFHS ED +VK F + + + S++ Sbjct: 258 NDELNELHKALKAAKKLLTPGGRLVVISFHSAEDSIVKHFLKDEATRKSSK---TMSDSD 314 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331 + + KKVV P+ +++ FN R RSAKLRA ++T + +E HL Sbjct: 315 SITWLPLHKKVVSPSDDEIFFNPRCRSAKLRAVVKTNKEVLELCQLTHLL 364 >gi|212715550|ref|ZP_03323678.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM 16992] gi|212660917|gb|EEB21492.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM 16992] Length = 343 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 160/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 + H PVLL + L+ P PG + +D T G G+S +F K + +I +DRD Sbjct: 1 MTDVTTIHQPVLLRDCVDLVAPALANPGSIAVDCTLGLAGHSTAFLKASPHARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ + M+ ++F A F + D+ V+ V DLG+SS+QID + Sbjct: 61 TEALALATQRMQMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + +A V+ + DL RI GEE+ + +IA AIV+RR+ Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQVLADYSFADLARIFRTYGEERFSKQIARAIVRRRE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 IEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F + + F+ +T+ + E++A Sbjct: 241 GGRLVVESYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAGDEEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 MNPRSASVRLRAVE 314 >gi|297626718|ref|YP_003688481.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922483|emb|CBL57056.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 342 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 165/319 (51%), Gaps = 11/319 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 + HVPV+ +V+ LL+PA PG V +D T G G++ ++ + Sbjct: 4 EATGPDPSTIHVPVMAARVVELLSPALDHPGAVYVDGTLGMAGHAELMLTANPQARLVGI 63 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCG 121 DRD A+ + + + L +A F +L + D G+ + +FDLG+SS+QID Sbjct: 64 DRDHDALDLASRRLAPFGARVHLARARFDELGRVLDDAGIATIDAALFDLGLSSLQIDRA 123 Query: 122 DRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM +A+ V+N+ + DL R+L GEEKQA+RI AIV R Sbjct: 124 DRGFAYRVDAPLDMRMDTRSELTAARVLNEYSPGDLVRVLRDYGEEKQATRIVRAIVAER 183 Query: 181 QSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + PF + L LI + + + +PA R+FQALRI VN E+E L+ L Sbjct: 184 EREPFTDSARLVDLILRAIPAAVRTKTKGNPAKRTFQALRIEVNGELEALSTVLPVMLGR 243 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 + V+++HSLEDR+VK+ F + + + + A F +T+ P Sbjct: 244 MGPAARAAVLAYHSLEDRIVKQVFTAATSDSAPAGLPVVPDEMAARFAPLTRGAEKPDAA 303 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++A N RS SA+LRA R Sbjct: 304 EIAENPRSASARLRAIERI 322 >gi|311087120|gb|ADP67200.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 312 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 122/316 (38%), Positives = 189/316 (59%), Gaps = 20/316 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++H I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP Sbjct: 1 MNH-IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPI 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125 A S G + +F + FS+L D+ ++ + +G++FDLGVSS+QID RGF Sbjct: 60 AFSIGSKIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGF 116 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q Sbjct: 117 SFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKK 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG Sbjct: 177 ITSTLELANIIKKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299 + ++SFHSLEDRLVKKF S K + M + + I + ++PTQ + Sbjct: 236 ISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNE 293 Query: 300 VAFNRRSRSAKLRAGM 315 + N R+RS+ LR Sbjct: 294 INNNPRARSSVLRIAE 309 >gi|261839470|gb|ACX99235.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 52] Length = 302 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 1 MHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ ++ +++L F++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 RLKAFEGRYNLLSGGFAKRFKEALETHGKEIKGVLVDLGVSSLQLDDDNRGFNFHSHALD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 121 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHSL Sbjct: 181 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCVISFHSL 235 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 236 EDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 295 Query: 312 RAGM 315 R Sbjct: 296 RVFQ 299 >gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans ATCC 51888] gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans ATCC 51888] Length = 345 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 125/293 (42%), Positives = 187/293 (63%), Gaps = 8/293 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVL +V+ L P G+ +D TFGAGGY+R+ + V+ALDRDP A+ + Sbjct: 21 HIPVLRSEVLETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLL 80 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS+L++ D VDGVV D+GVSSMQ+D +RGFSFQ GPLD Sbjct: 81 AEFAPRLTLVESPFSRLEEVAQDALGGAQVDGVVLDIGVSSMQLDDAERGFSFQHDGPLD 140 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS +G + +D VN A + + ++ GEE ++ IA AIV+RR P+ T++L+ Sbjct: 141 MRMSSNGQTVADFVNSAAEEIIANVIYAFGEEHKSRAIARAIVRRRAETPYARTRELADT 200 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + + K + HPATR+FQALRIF+N+E+ ELA L +AE+ L+ GG L+VVSFHSLE Sbjct: 201 VSRVFHGRKVDGRHPATRTFQALRIFINDELGELASALSAAERVLRPGGRLVVVSFHSLE 260 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304 DR+VKKF A RSGK +V +P+ + P F+ + + + P++ ++ N Sbjct: 261 DRIVKKFIAERSGKTQSVSRHLPTETIKSTPPSFRIVNSRPLTPSKGELDVNP 313 >gi|15618336|ref|NP_224621.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae CWL029] gi|15835954|ref|NP_300478.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae J138] gi|16752618|ref|NP_444882.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae AR39] gi|33241770|ref|NP_876711.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae TW-183] gi|20139310|sp|Q9Z8C2|RSMH_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4376702|gb|AAD18565.1| SAM-Dependent Methytransferase [Chlamydophila pneumoniae CWL029] gi|7189261|gb|AAF38187.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978793|dbj|BAA98629.1| SAM-dependent methytransferase [Chlamydophila pneumoniae J138] gi|33236279|gb|AAP98368.1| predicted S-adenosylmethionine-dependent methyltransferase [Chlamydophila pneumoniae TW-183] gi|269303297|gb|ACZ33397.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae LPCoLN] Length = 297 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 161/303 (53%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+E+ +AL P + D T GAGG++ +F + ++ DRD A++ ++ Sbjct: 6 HIPVLVEECLALFAQRPPQTFRDVTLGAGGHAYAFLEAYPSLTCYDGSDRDLQALAIAEK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + ++++ S A+F L + + DGV+ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 66 RLETFQDRVSFSHASFEDLANQPTPRLYDGVLADLGVSSMQLDTLSRGFSFQGEKEELDM 125 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + SASDV+N ++L RI GEE Q A A+V R+ + QD+ Sbjct: 126 RMDQTQELSASDVLNSLKEEELGRIFREYGEEPQWKSAAKAVVHFRKHKKILSIQDVKEA 185 Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + + +IHP T FQALR++VN E +L L SA L G L+++SF S Sbjct: 186 LLGVFPHYRFHRKIHPLTLIFQALRVYVNGEDRQLKSLLTSAISWLAPQGRLVIISFCSS 245 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK FF + + ITKKV+ PT ++V N RSRSAKLR Sbjct: 246 EDRPVKWFFKEAEASG--------------LGKVITKKVIQPTYQEVRRNPRSRSAKLRC 291 Query: 314 GMR 316 + Sbjct: 292 FEK 294 >gi|307330443|ref|ZP_07609586.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu 4113] gi|306883868|gb|EFN14911.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu 4113] Length = 310 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 175/307 (57%), Gaps = 10/307 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + +L P PG V++D T G GG+S + + +IALDRDP A+ E + Sbjct: 1 MLQRCLDMLAPALAQPGAVVVDCTLGLGGHSEALLRDFPEARLIALDRDPSALRLAGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ +L A + +L + + V G++FDLGVSSMQ+D +RGF++ + PLDM Sbjct: 61 APYGDRATLVHAVYDELPEVLDRLGVPRVQGILFDLGVSSMQLDEAERGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G+SA++V+N +L RIL GEEK A +I A+V+ R PF + L L Sbjct: 121 RMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKFAKKIVDAVVRERAKEPFTNSARLVEL 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A L GG + V+S+HSL Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAIPAAVGTLAVGGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+ R Sbjct: 241 EDRLVKQVFAAGARNTAPPGLPVIPEQYQPRLKLLTRGAELPTEEEIAENRRAAPARFRG 300 Query: 314 GMRTVER 320 R E Sbjct: 301 AERIREE 307 >gi|169831601|ref|YP_001717583.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis audaxviator MP104C] gi|263446209|sp|B1I4D9|RSMH_DESAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169638445|gb|ACA59951.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis audaxviator MP104C] Length = 324 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 9/316 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPF 69 + T H PV+L +V+ L+P PG +D T G GG++ + G ++ +DRD Sbjct: 1 MTLTGFRHQPVMLREVLEWLDPKPGGTYVDCTLGGGGHALGVLERIGGRGLLVGIDRDAD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + Y + L QA F +L + V G+++DLGVSS Q+D RGF Sbjct: 61 ALAAAAFRLAGYGDGVRLVQADFRELAAVLRRLETGPVQGILYDLGVSSHQLDTASRGFG 120 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 +Q+ PLDMRM G++A+D+VN+ +L+ ++ GEE+ + RIA I + R+ P Sbjct: 121 YQQDAPLDMRMDPGGGVTAADLVNRLPEDELSDLIKAYGEERWSRRIAAFIARERKREPI 180 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +I++ V ++ HPA R+FQALRI VN+E+ L L A L AGG Sbjct: 181 LTTGRLAEVIKEAVPARARRTGPHPARRTFQALRIAVNDELGALKTSLHQAVDLLDAGGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+S+HSLEDRLVK F + + +T + VP ++++A N Sbjct: 241 VVVLSYHSLEDRLVKDTFREFAVHCKCPPGLPECRCGVVPRLDILTSRPRVPGEDEIAAN 300 Query: 304 RRSRSAKLRAGMRTVE 319 R+RSAKLRA + + Sbjct: 301 PRARSAKLRAARKRAD 316 >gi|317009278|gb|ADU79858.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori India7] Length = 308 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 169/310 (54%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + G H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIGGLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKESLETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N +V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED+LVK F + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDKLVKNAFKDYAKNCTCDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|307151535|ref|YP_003886919.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822] gi|306981763|gb|ADN13644.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822] Length = 299 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 25/319 (7%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62 + T S + +HVPVL ++I+ LN PG LDAT GAGG++R + + V Sbjct: 2 TKVTQMSTADFSTFNHVPVLTRELISGLNICPGGHYLDATVGAGGHTRKLLESYANVRVT 61 Query: 63 ALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 A+DRD A++ + +Y ++ + +Q F+ + ++ DG++ DLGVSS Q+D Sbjct: 62 AIDRDSTAIAAAAANLAEYNIDRLTFWQGNFANYEA--KEETFDGIIADLGVSSPQLDHP 119 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF+ PLDMRM C ++A+ V+N + +LT+I GEE+ + +IA IVK Sbjct: 120 ERGFSFRLEAPLDMRMDCGQSLTAATVINTWDETELTKIFYNYGEERLSRQIAKQIVK-- 177 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q + TT+ + + + + RIHPATR FQALRI VN E+E L L + LK Sbjct: 178 QRPFYSTTELANVIARSVPPKYRYGRIHPATRVFQALRIAVNQELESLLSFLIKSPYWLK 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G++ V+SFHSLEDR+VK F S + + +TKK ++P ++ Sbjct: 238 RDGIIGVISFHSLEDRIVKHQFRSS-----------------PLLKVLTKKPIIPQSDEQ 280 Query: 301 AFNRRSRSAKLRAGMRTVE 319 A N RSRSAKLR R Sbjct: 281 AKNPRSRSAKLRLAQRQEA 299 >gi|238060255|ref|ZP_04604964.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149] gi|237882066|gb|EEP70894.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149] Length = 366 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 177/315 (56%), Gaps = 11/315 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL P + + +DAT G G++ + + + +I LDRD A+ Sbjct: 6 GTHVPVLLERCLELLAPALARGDRTVHVDATLGLAGHAEAVLERHPHTVLIGLDRDTEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 66 AHARVRLARFADRVHLEHAVYDELPEVLGRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 125 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G++A +VVN + DL R+L + GEEK A RIA AI++ R+ A + Sbjct: 126 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITS 185 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L+++++ + HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 186 SARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K R V + F+ +++ +P + +VA N R+ Sbjct: 246 VLSYHSLEDRLTKAALTDRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 305 Query: 307 RSAKLRAGMRTVERS 321 S +LRA R + Sbjct: 306 ASVRLRAAERIDPEA 320 >gi|219682152|ref|YP_002468536.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254813208|sp|B8D7C6|RSMH_BUCAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219621885|gb|ACL30041.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 312 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 122/316 (38%), Positives = 189/316 (59%), Gaps = 20/316 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++H I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP Sbjct: 1 MNH-IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPI 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125 A S G + +F + FS+L D+ ++ + +G++FDLGVSS+QID RGF Sbjct: 60 AFSIGSKIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGF 116 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q Sbjct: 117 SFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKK 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG Sbjct: 177 ITSTLELANIIKKTI-PTKNKFKHPARRSFQAIRIYINQELEEIHKALESTLKILKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299 + ++SFHSLEDRLVKKF S K + M + + I + ++PTQ + Sbjct: 236 ISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNE 293 Query: 300 VAFNRRSRSAKLRAGM 315 + N R+RS+ LR Sbjct: 294 INNNPRARSSVLRIAE 309 >gi|17547571|ref|NP_520973.1| S-adenosyl-methyltransferase MraW [Ralstonia solanacearum GMI1000] gi|20138981|sp|Q8XVH9|RSMH_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17429875|emb|CAD16559.1| putative s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum GMI1000] Length = 319 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 180/324 (55%), Gaps = 23/324 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VL ++ I L + +D TFG GG+SR + G +IA D+ Sbjct: 1 MTTQASTGLRHQTVLRDEAIDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A++ +F++ +F+ L D V GV+ DLG+SS QID G R Sbjct: 61 DPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGAR 117 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR+ Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL+SA + Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKSAFER 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292 L+ GG L+V+SFHSLEDR+VK+F +S R + ++ P + + + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 V P++ +V+ N RSRSA +R R Sbjct: 295 VRPSEAEVSANPRSRSAIMRVAER 318 >gi|159900036|ref|YP_001546283.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC 23779] gi|263456121|sp|A9B518|RSMH_HERA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159893075|gb|ABX06155.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC 23779] Length = 337 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 177/330 (53%), Gaps = 30/330 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVS 72 + H+PVL + +A LN P +D T G G+S + ++A+D+DP A++ Sbjct: 1 MVSMHIPVLYDAALAALNLRPDGRYIDGTLGWAGHSSGILEGSGPTGRLLAIDQDPMALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + Y E+ ++ + Q+ + VDG++ D+GVSS Q+D +RGFSFQ Sbjct: 61 AARERLAPYGERATIVHGNYRQMASLAAQHGWQQVDGILLDIGVSSPQLDLPERGFSFQY 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ G SA+D++ Q + L ++ GEE+ + RIA IV++R +P +T Sbjct: 121 DAPLDMRMNPTRGESAADLIAQLDETSLANLIYEYGEERLSRRIARRIVEQRSKSPITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+SL++ V + HPATR+FQALRI VN+E+ L +GL +A L GG L V+ Sbjct: 181 AQLASLVKSAVGGQ-AGKTHPATRTFQALRIAVNDELGALREGLAAATNLLAPGGRLAVI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-------------------RHMIPS---NAHPAVFQ 286 +FHSLEDR+VK++ ++ + + + P + + Sbjct: 240 TFHSLEDRIVKEWMRDQASECLIPAKLEILACPHNCAANTGPRSCIYPVGRDCDYVPTLE 299 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +++K + T E++ N R+RSAKLR R Sbjct: 300 VLSRKPIEATPEELKANPRARSAKLRVAER 329 >gi|297379907|gb|ADI34794.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori v225d] Length = 308 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCVCDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] Length = 1479 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 127/336 (37%), Positives = 178/336 (52%), Gaps = 30/336 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + HVPV+ + I L P ++ +D TFGAGG+++ K + +I LDRDP A Sbjct: 1144 MSTEAVRHVPVMAAEAIKFLKPQDSELFIDMTFGAGGHTKQILKAAPNAKIITLDRDPVA 1203 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGF 125 QE + Y Q FS+L + + + +DG++FD G SSMQ D G+RGF Sbjct: 1204 HELAQEMAKRYPGQIYPVLGRFSELPAKLKELNVNQRSIDGMIFDFGCSSMQFDEGERGF 1263 Query: 126 SFQKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 S K+GPLDMRM SA+DV+ + + DL RIL + GEEK A RIA AIV+ R Sbjct: 1264 SISKNGPLDMRMDKDRCPDAPSAADVLARIDEMDLARILKVYGEEKFAKRIARAIVEARH 1323 Query: 182 SAPF--QTTQDLSSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSA 235 S T + + + ++ HPAT++FQALRIFVNNE+ E+ G+ A Sbjct: 1324 SIKKIETTKELAELVQTCCASEFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILA 1383 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------P 282 + LK GG +I ++FHSLED +VK+ MA + + +H Sbjct: 1384 QHYLKIGGKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALK 1443 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + +TK VVVP+ +V N RSRSAKLRA +R Sbjct: 1444 PNWHQMTKHVVVPSDAEVEENPRSRSAKLRAVVRVE 1479 >gi|299065600|emb|CBJ36772.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum CMR15] Length = 319 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 181/324 (55%), Gaps = 23/324 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VL ++ + L + +D TFG GG+SR + G +IA D+ Sbjct: 1 MTTQASTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGSGGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A++ +F++ +F+Q+ D V GV+ DLG+SS QID G R Sbjct: 61 DPAAITEAG---TVEDARFAIEHDSFAQMGSALDARGIGRVAGVLLDLGISSPQIDEGAR 117 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR+ Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P T +L++L+ + V ++ PATR+FQALRI +N E+ +L GL++A + Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHINQELADLETGLKAAFER 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292 L+ GG L+V+SFHSLEDR+VK+F +S R + ++ P + + + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 V P++ +V+ N R+RSA +R R Sbjct: 295 VRPSEAEVSANPRARSAIMRVAER 318 >gi|326779858|ref|ZP_08239123.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf. griseus XylebKG-1] gi|326660191|gb|EGE45037.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf. griseus XylebKG-1] Length = 321 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 180/320 (56%), Gaps = 13/320 (4%) Query: 16 TIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + HVPV+L++ + LL PA P V++D T G GG+S + +IALDRD Sbjct: 2 SQTRHVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPAARLIALDRD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 A+ E + Y ++ +L A + +L + + V GV+FDLGVSSMQ+D DRG Sbjct: 62 KEALRLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRG 121 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ + PLDMRM +G+ A++V+N +L RIL GEEKQA RI A+V+ R+ Sbjct: 122 FAYAQDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKE 181 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF + L LI+ + + K +PA R+FQALRI VN E+ L + + +A +L G Sbjct: 182 PFSNSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVG 241 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+++VA Sbjct: 242 GRIAVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAE 301 Query: 303 NRRSRSAKLRAGMRTVERSI 322 NRR+ A+LR R Sbjct: 302 NRRAAPARLRGAQRIRAEER 321 >gi|182439206|ref|YP_001826925.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|262826728|sp|B1W0I2|RSMH_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|178467722|dbj|BAG22242.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 321 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 180/320 (56%), Gaps = 13/320 (4%) Query: 16 TIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + HVPV+L++ + LL PA P V++D T G GG+S + +IALDRD Sbjct: 2 SQTRHVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPTARLIALDRD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 A+ E + Y ++ +L A + +L + + V GV+FDLGVSSMQ+D DRG Sbjct: 62 KEALRLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRG 121 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ + PLDMRM +G+ A++V+N +L RIL GEEKQA RI A+V+ R+ Sbjct: 122 FAYAQDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKE 181 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF + L LI+ + + K +PA R+FQALRI VN E+ L + + +A +L G Sbjct: 182 PFSNSARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVG 241 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+++VA Sbjct: 242 GRIAVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAE 301 Query: 303 NRRSRSAKLRAGMRTVERSI 322 NRR+ A+LR R Sbjct: 302 NRRAAPARLRGAQRIRAEER 321 >gi|255536597|ref|YP_003096968.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium 3519-10] gi|255342793|gb|ACU08906.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium 3519-10] Length = 297 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 159/306 (51%), Gaps = 17/306 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H PVLL + + L P + +D TFG GG+S + + + + D+D A+ Sbjct: 2 YHNPVLLTRSVDDLVTNPDGIYVDVTFGGGGHSAAILRKLSSKGRLFSFDQDLDALKNTI 61 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++F+L F L++ KGVDGV+ DLGVSS Q D +RGFS + P Sbjct: 62 E-----DDRFTLINQNFRFLENSLMVYGIKGVDGVLADLGVSSHQFDAAERGFSTRSDAP 116 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ A V+N+ + L I GE ++A ++A IV R+ P +TT+DL Sbjct: 117 LDMRMNVLQPLDAKKVINEYEEEQLADIFYYYGELREARKLAREIVHHRKLKPIETTEDL 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L + K N+ + FQA+RI VN E+E L + L + LK G L+V+S+H Sbjct: 177 KKLF-SYIPQFKQNK--FFAQVFQAVRIEVNQELEVLKEMLVQSYNILKPNGRLVVISYH 233 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK++ + + R + F+ + K V+P ++ N R+RSAK+ Sbjct: 234 SLEDRLVKRYLKNGMFEGEPARDIY--GNFQKTFELLQTKAVIPDATEIEENSRARSAKM 291 Query: 312 RAGMRT 317 R G++ Sbjct: 292 RVGIKI 297 >gi|119493501|ref|ZP_01624168.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106] gi|119452684|gb|EAW33864.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106] Length = 291 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 158/309 (51%), Gaps = 28/309 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 T H+PVL ++IA L G LDAT G GG+S + + A+D+D A++ Sbjct: 2 TNFVHIPVLSRELIAGLFVVAGGHYLDATVGGGGHSLLILQAAPDVRITAIDQDEVAIAA 61 Query: 74 GQETMRDYKEQF----SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + F ++ F+ Q DG++ DLGV+S Q+D RGFSF+ Sbjct: 62 TRARLAEVEPCFADRVQFWRGNFADYQPQGMQ--FDGIIADLGVNSSQLDTPTRGFSFRH 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 S PLDMRM+ +SA+D++N + +L I GEE+ + RIA IV+ TT Sbjct: 120 SAPLDMRMNLQQSLSAADIINTWDEGELADIFFHYGEERLSRRIARRIVQ--NRPFETTT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 Q + S+ RIHPATR FQALRI VN E+ L L A + LK GG + V+ Sbjct: 178 QLADVIASCYPSKSRYGRIHPATRVFQALRIAVNQELTALETFLSRAPQWLKLGGRIGVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK+ F S S Q +TKK + ++A N RSRS Sbjct: 238 SFHSLEDRRVKQSFKSDSD-----------------LQVLTKKPIQAQALEIADNPRSRS 280 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 281 AKLRLAERI 289 >gi|323356558|ref|YP_004222954.1| S-adenosylmethionine-dependent methyltransferase [Microbacterium testaceum StLB037] gi|323272929|dbj|BAJ73074.1| predicted S-adenosylmethionine-dependent methyltransferase [Microbacterium testaceum StLB037] Length = 317 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 9/311 (2%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ LL P P V +D T G GG+S +F + +I LDRD A+ Sbjct: 7 HTPVLLERCAELLAPALERPDAVFVDGTLGMGGHSEAFLERFPTARLIGLDRDTDALRIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + V VDG++FDLGVSS+Q+D RGF++ + Sbjct: 67 GERLARFGDRVTLVHTVYDGIAEAVASAGVDKVDGILFDLGVSSLQLDEASRGFAYAQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G++A++V+ DL RI GEEK A R A AI+ R AP + + Sbjct: 127 PLDMRMDQTQGVTAAEVLATYGEGDLRRIFERYGEEKLAGRYARAIIAARAEAPLERSGQ 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++Q + HPA R FQALRI VN E+ L + + +A K L GG ++V+S+ Sbjct: 187 LVDVLQAATPAAVLRERHPAKRVFQALRIEVNAELSVLERTIPAALKVLGVGGRIVVLSY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ FA + + H F+ + + + + E+ A N R+ + Sbjct: 247 QSLEDRLVKRVFAEAAASTAPRGLPVELPEHAPKFRLLVRGAELASDEERAANPRATPVR 306 Query: 311 LRAGMRTVERS 321 LRA RT E + Sbjct: 307 LRAAERTKEDA 317 >gi|308063505|gb|ADO05392.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Sat464] Length = 308 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 168/310 (54%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 SG++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESGLNAQKVINSYPVVALEKIFKGYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+RA Sbjct: 296 SRSAKMRAFQ 305 >gi|78187960|ref|YP_376003.1| methyltransferase [Chlorobium luteolum DSM 273] gi|123582409|sp|Q3B121|RSMH_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78167862|gb|ABB24960.1| methyltransferase [Chlorobium luteolum DSM 273] Length = 327 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 19/318 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69 H PVLL + + L P + +D T G GG+S + + + ++ +D+D Sbjct: 7 SYHDPVLLHECVDALVRGP-GLYVDGTLGGGGHSMAILRALESGGWLEGSLLVGIDQDDE 65 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQIDCG 121 A+ + Y + + F + + ++ DLGVSS QID Sbjct: 66 ALHEAGSRLAAYPGRAVAVKGNFQDIARLASREAVQKGLEPRARAILLDLGVSSRQIDRA 125 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ ++GPLDMRM S +A+D++N A+ ++L I GEE ++ IA A++ R Sbjct: 126 ERGFSYMRTGPLDMRMDSSASTTAADILNDADERELAAIFFRYGEEPRSRAIARAVIAAR 185 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ + + I ++V + I +R FQALRI VN E++ L + L L Sbjct: 186 MKHGPLSSTEDLADIVRSVVHGRQPSIRSLSRVFQALRIAVNRELDVLQRVLEDGVSVLD 245 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299 GG + V+S+HSLEDR+VK++FA++S + + + +T+K VV ++++ Sbjct: 246 EGGRIAVISYHSLEDRMVKQYFAAQSKCDWGPKGVGLREPLSRGTLVPVTRKAVVASEDE 305 Query: 300 VAFNRRSRSAKLRAGMRT 317 V N RSRSAKLR +T Sbjct: 306 VRVNPRSRSAKLRVAEKT 323 >gi|83748758|ref|ZP_00945773.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551] gi|207721512|ref|YP_002251952.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum MolK2] gi|207744409|ref|YP_002260801.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum IPO1609] gi|83724579|gb|EAP71742.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551] gi|206586672|emb|CAQ17258.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum MolK2] gi|206595814|emb|CAQ62741.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum IPO1609] Length = 319 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 23/324 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VL ++ + L + +D TFG GG+SR + G +IA D+ Sbjct: 1 MTTQASTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A++ +F++ +F+ L D V GV+ DLG+SS QID G R Sbjct: 61 DPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGAR 117 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL++A + Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFER 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292 L+ GG L+V+SFHSLEDR+VK+F +S R + ++ P + + + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 V P++ +V+ N R+RSA +R R Sbjct: 295 VRPSEAEVSANPRARSAIMRVAER 318 >gi|298245975|ref|ZP_06969781.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM 44963] gi|297553456|gb|EFH87321.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM 44963] Length = 320 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 151/305 (49%), Gaps = 14/305 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HV V+LE+V+ L P PG +D T G GG++ + V+ +D D Sbjct: 1 MENEQTRHVSVMLEEVMEYLRPQPGGHYIDGTLGGGGHTSVLLERSAPDGKVLGIDTDSK 60 Query: 70 AVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRG 124 A + Q + + + L FS ++ + ++ DLG SS Q+D RG Sbjct: 61 AQARVQARLSKEVAEGRLILSHGNFSDMERLAQEAQFTSVDGILLDLGFSSDQMDDPQRG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF GPLDMR+S ++A+D+VN ++L I GEE+++ +IA I + RQ Sbjct: 121 FSFSADGPLDMRLSQDLSLTAADLVNNTGEEELADIFWRYGEERRSRQIARRIGRERQKR 180 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK--- 240 T L+ + K IHPATR FQALRI VN E+E L L L+ Sbjct: 181 AITRTSQLAEIA-AAGVPYKYGAIHPATRVFQALRIAVNQELESLETALPQMLSLLQAGG 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299 G +++++FHSLEDR+VK+F + + + H A + +T K +VP +++ Sbjct: 240 KQGRMVIIAFHSLEDRIVKEFLRREARDCLCPPRIPMCICGHKASLRILTNKPIVPGEQE 299 Query: 300 VAFNR 304 VA N Sbjct: 300 VAANP 304 >gi|262341157|ref|YP_003284012.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272494|gb|ACY40402.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 301 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 14/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL++ I L + +DATFG GG+S + K + +IALD+D ++ Sbjct: 10 HEPVLLKESIENLITDKNGIYVDATFGGGGHSYAILKKLNKRGILIALDQDKESIKR-NF 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 F + + + V G++ DLG+SS+QID RGFS Q + LDMR Sbjct: 69 IKDKRFHLFHNNFIHIRDILNQNHIEKVSGILVDLGLSSLQIDNPTRGFSNQWNCTLDMR 128 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ SA +V+N+ + K+L I GE K A +I I+K+R T DLS+L Sbjct: 129 MNQESSYSAQNVINECSKKELFHIFYEYGEFKNAKKIVEKILKKRFQKNITNTLDLSNLF 188 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ S R R FQ++RI VNNEI L L + K + GG + V+S+HS+ED Sbjct: 189 F--IHGSFKKRKRFLARLFQSIRIEVNNEINILKDFLLESSKIILPGGRIAVISYHSIED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+ K F +P F+ I KKV+ P+ +++ N RSRSA+LR Sbjct: 247 RITKYFLKEEFLIKKMNFKTLP-------FRMIHKKVIKPSFQEIIRNPRSRSARLRIAE 299 Query: 316 RT 317 + Sbjct: 300 KV 301 >gi|330469297|ref|YP_004407040.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris AB-18-032] gi|328812268|gb|AEB46440.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris AB-18-032] Length = 394 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 179/328 (54%), Gaps = 11/328 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA--PGK--VILDATFGAGGYSRSFCKM 57 E K + + G HVPVLLE+ + LL PA G V +DAT G G++ + + Sbjct: 18 EENKVKPVGVDMGELRGTHVPVLLERCLELLAPALGRGGRTVHVDATLGLAGHAEAVLQA 77 Query: 58 GSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLG 112 ++ LDRD A+ + + + ++ L A + +L + + VDG++FDLG Sbjct: 78 HPETILVGLDRDTEALEHARVRLARFADRVHLEHAVYDELPEVLDRLGYPTVDGILFDLG 137 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS+Q+D DRGF++ + PLDMRM G++A +VVN +L R+L + GEEK A R Sbjct: 138 VSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYTHPELARVLRVYGEEKFAGR 197 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AI++ R+ ++ L+ L+++++ + HPA R+FQALRI VN E+ L Sbjct: 198 IASAIIRERERVRITSSARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAVLET 257 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L +A L GG L+V+S+HSLEDRL K+ A R + + F+ +++ Sbjct: 258 ALPAALDRLSVGGRLVVLSYHSLEDRLTKQALADRVRSTGPIDLPVELPGSEPTFRLLSR 317 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +P + +VA N R+ S +LRA R Sbjct: 318 GAELPGEAEVAANPRAASVRLRAAERID 345 >gi|313681992|ref|YP_004059730.1| s-adenosyl-methyltransferase mraw [Sulfuricurvum kujiense DSM 16994] gi|313154852|gb|ADR33530.1| S-adenosyl-methyltransferase MraW [Sulfuricurvum kujiense DSM 16994] Length = 307 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 12/305 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 H+PVL +VI +P +++D T G GG+S + ++I +D+DP A++ Sbjct: 4 TPHIPVLYREVIEAFSPCKEGIVIDCTMGYGGHSSLLLENNPALSLIGIDQDPTAIAFSS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQIDCGDRGFSFQKSGP 132 + + + + + + FS++ ++ + + D+GVSS+Q+D +RGFS++ Sbjct: 64 KRLEPFGNRVEIRRGRFSEVARDAIEEKGEKICGILADIGVSSLQLDQRERGFSYESDTL 123 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 + +SA +VVN + L IL GE A ++A IV+RR PF + ++LS Sbjct: 124 DMRMNPDAPLSAGEVVNDYSQGALETILREYGEVTNARKVAETIVQRR---PFSSAKELS 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I K +IHP+T QA+RI VN+E+ EL + L + E + + +++FHS Sbjct: 181 NAIFH--LMPKGKKIHPSTLVMQAIRIEVNDELGELTRLLDAIEASKLKHLRVAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + A+ + ITKK + +++ N RSRSAK Sbjct: 239 LEDRIVKNRFTKWGKNCICPDDAMRCTCGNKNAIGKIITKKPLSAQDDELRANSRSRSAK 298 Query: 311 LRAGM 315 LR Sbjct: 299 LRIFE 303 >gi|94970665|ref|YP_592713.1| S-adenosyl-methyltransferase MraW [Candidatus Koribacter versatilis Ellin345] gi|263433351|sp|Q1IKG1|RSMH_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94552715|gb|ABF42639.1| methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 171/312 (54%), Gaps = 26/312 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VL ++ I L G LDAT G GG+S K ++IALD+D A+ Sbjct: 16 EQFSHVSVLSQEAIDFLAIRRGGTYLDATLGLGGHSYEIAKRLGAQGHLIALDKDTNALE 75 Query: 73 CGQETMRDYKEQF-------SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + + +L A+F++++ ++ K +DGV+ DLG+SSMQ+ RGF Sbjct: 76 MARRRLEQVPDDLKEDWPQITLLHASFAEMKQHIASKSLDGVLADLGISSMQLQDAGRGF 135 Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SFQ GPLDMRM+ G +A VVN + ++L ++ GEE+++ RIA AI + R Sbjct: 136 SFQAEGPLDMRMNPHGDLTAEQVVNHTSERELADVIYEFGEERRSRRIARAICRARPIRT 195 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + S+ + + ++ RIHPAT++FQALRIFVN+E+++L + L S L G Sbjct: 196 TAHLAQVISVAARPMNQAER-RIHPATKTFQALRIFVNHELDDLKELLASVPSRLVPRGR 254 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK + ++ +TKK V T+E++ N Sbjct: 255 LVVISFHSLEDRIVKDSLRDGASAG--------------KYELLTKKPVTATEEEIDRNP 300 Query: 305 RSRSAKLRAGMR 316 RSRSAKLRA R Sbjct: 301 RSRSAKLRAAAR 312 >gi|110004576|emb|CAK98913.1| probable s-adenosyl-methyltransferase mraw protein [Spiroplasma citri] Length = 313 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL++ IA LN + +D T G G+S K + ++D A+ Sbjct: 1 MEFKHQTVLLQEAIAGLNILNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIIA 60 Query: 74 GQETMRDYK-EQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ +++ K + + + F L K V+G+++DLGVSS Q+D +RGFS++ Sbjct: 61 SKQILQESKYHNYEIIKNNFVNLAAELQVRQVKAVNGILYDLGVSSPQLDDDNRGFSYRY 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM+ +A +VN + + L ++ GEE A IA IV R + TT Sbjct: 121 DSLLDMRMNQKQELTAKIIVNTYSQEALAKLFQDYGEEPFAKVIAKNIVIARNTQEIVTT 180 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+K++ + HPA R FQALRI VN E+ L + L A L G L+V Sbjct: 181 FHLVEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLLQATTLLAVHGRLVV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VKK+F S + + + + + +Q I KK +VP+ + A N R Sbjct: 241 ISFHSLEDRIVKKYFQSLTKDPNYEINQQLPVISHFESNYQIIIKKAIVPSGTEQARNHR 300 Query: 306 SRSAKLRAGMRTV 318 S SAKLR R Sbjct: 301 STSAKLRILERVK 313 >gi|73988949|ref|XP_534100.2| PREDICTED: similar to methyltransferase 5 domain containing 1 [Canis familiaris] Length = 694 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 129/335 (38%), Positives = 184/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G++ LD TFG+GG++R+ + S+ + ALDRDP A + ++ Sbjct: 359 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 418 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV GV+ D G SSMQ+D +RGFS +K GP Sbjct: 419 SELYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDPGCSSMQLDAPERGFSLRKDGP 478 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 479 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 538 Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S+ V+ K H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 539 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 598 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRS-------------------GKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F S G + Sbjct: 599 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQALKLGSGRENMEGASISKA 658 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P ++V N R+RSAKLRA ++ Sbjct: 659 PLMWELIHKKVLTPDDQEVQENPRARSAKLRAAIK 693 >gi|108804337|ref|YP_644274.1| methyltransferase [Rubrobacter xylanophilus DSM 9941] gi|123069097|sp|Q1AVW6|RSMH_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108765580|gb|ABG04462.1| methyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 312 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 167/314 (53%), Gaps = 11/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H PV+LE+ + L P+ G V++DATFG GG+S + G V+ +DRDP A Sbjct: 2 AAAQHRPVMLEEAVRALAPSGGDVVVDATFGGGGHSARVLRELGPGGRVVGIDRDPEARG 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D + F + + D ++FDLG+SS Q+D RGFS+ + GP Sbjct: 62 RAERLLGDPRFSFEQGPYDEVLWRMVGRGERADALLFDLGLSSFQVDDPRRGFSYTREGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+D +N A ++ +L G+ +A + + + P +TT DL Sbjct: 122 LDMRMDPGSGPSAADFLNAAGEAEIAGVLSEYGDVPRA-QARRVAREILRRRPLRTTADL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ V ++ +PA R FQA+RI VN+E+ L + L +AE+ L GG L+V+SFH Sbjct: 181 REAVRAAVGWAPRGG-NPAKRVFQAVRIRVNDELGGLRRALEAAERLLVPGGRLVVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVV-VPTQEDVAFNRRSRSA 309 S EDRLVK+F A R G+ + VF+ + V P++ +VA N RS A Sbjct: 240 SGEDRLVKRFIAEREGRCTCPPELPVCVCGARPVFR---RGPVLRPSEREVAENPRSAPA 296 Query: 310 KLRAGMRTVERSIE 323 ++R RT E + E Sbjct: 297 RMRVAFRTAEPARE 310 >gi|307544543|ref|YP_003897022.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581] gi|307216567|emb|CBV41837.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581] Length = 318 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 168/320 (52%), Gaps = 16/320 (5%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 MSS H VLL+ + L P LD TFG GG+SR+ + ++ Sbjct: 1 MSSPASEQPSRGFRHASVLLDGAVETLVHDPSGRYLDGTFGRGGHSRAILERLSPQGRLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQI 118 A+DRDP A+ +F+ + F++L D+ + G++ D+GVSS Q+ Sbjct: 61 AIDRDPQAIQEAAAI---EDARFAFERGDFARLGDFARAHDLHGKLDGILLDVGVSSPQL 117 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF + GPLDMRM G SA+ + +A+ ++ R+ GEE+ A R+A AIV Sbjct: 118 DDPERGFSFLRDGPLDMRMDPEHGESAAAWIARADEGEIARVFKTYGEERFARRLARAIV 177 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RR F T DL+ +I+ + + HPATR+FQALRI VN E+E+L L +A + Sbjct: 178 ARRGERAFTRTADLAEVIKAAHPAWEKGK-HPATRAFQALRIQVNGELEQLDLALEAALE 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPT 296 AL GG L+V+SFHSLEDR VK+F + IP + K PT Sbjct: 237 ALAPGGHLVVISFHSLEDRRVKRFIRDHVRGDTHLPRGIPLRDDQIQRRLEALGKARRPT 296 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 E+V N R+RSA +RA + Sbjct: 297 SEEVEDNPRARSAVMRAARK 316 >gi|291457557|ref|ZP_06596947.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213] gi|291380610|gb|EFE88128.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213] Length = 350 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 118/325 (36%), Positives = 166/325 (51%), Gaps = 14/325 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H PVLL+ + L+ PA G V +D T G G+S +F K +I +DRD Sbjct: 1 MIDVTNIHQPVLLDDCVNLVAPALQHEGAVAVDCTLGLAGHSTAFLKAAPQARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ E M ++F+ A F QL + D+ VD V DLG+SS+QID D Sbjct: 61 SEALALATERMVQEGLSDRFTPVHAAFDQLDQVLADQGVERVDAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A ++ ++ L R+ GEE+ A +IA IV RR Sbjct: 121 RGFSYSHDAPLDMRMDVSQNLTAERILADYDMASLIRVFREYGEERFARQIAREIVSRRT 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT L++L++ V + +PA R FQALRI VN E+++L+ L A L+ Sbjct: 181 QTPFTTTGQLNALVEDVVPKAHRPAGNPAKRVFQALRIEVNGELDKLSSILPQAANRLQV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F A I + F+ +T+ + E+ Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLKIDAPANLPIVPDDAQPFFRELTRGAIKADDEERQ 300 Query: 302 FNRRSRSAKLRAGM---RTVERSIE 323 N RS S +LRA R ER E Sbjct: 301 RNPRSASVRLRAVELSRRIPERWRE 325 >gi|89898443|ref|YP_515553.1| S-adenosyl-methyltransferase MraW [Chlamydophila felis Fe/C-56] gi|123483153|sp|Q253Y0|RSMH_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89331815|dbj|BAE81408.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 298 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 155/308 (50%), Gaps = 20/308 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAV 71 H+PVL+ + ++L K D T GAGG++ +F +++ DRD A+ Sbjct: 2 SEAPQHIPVLVNECLSLFADRNPKFFCDVTLGAGGHAEAFLSAYPSIVSYDGSDRDTMAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KS 130 S +E + + + L A+F L + DG++ DLGVSSMQ+D RGFSFQ Sbjct: 62 SLAKERLEKFGNRVHLHHASFEDLAQNPRENVYDGILADLGVSSMQLDTLSRGFSFQGDD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM G +AS+V+N +DL RI GEE Q A AIV+ R+ T + Sbjct: 122 HDLDMRMDTSKGTTASEVLNTLREEDLGRIFREYGEEPQWKNAAKAIVQFRRHKKIITVR 181 Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL + + +IHP T FQALR++VN E +L L SA + L G LI++ Sbjct: 182 DLKEATTRVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVFLESAMRWLAPEGRLIII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SF S EDR VK FF V + +TKKVV+PT E+ N R RS Sbjct: 242 SFCSSEDRPVKWFFREAEAMG--------------VGKILTKKVVMPTYEETRKNPRCRS 287 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 288 AKLRCFEK 295 >gi|268318248|ref|YP_003291967.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252] gi|262335782|gb|ACY49579.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252] Length = 327 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 114/330 (34%), Positives = 181/330 (54%), Gaps = 18/330 (5%) Query: 1 MESKSCKTMS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 M +S T + +A + HVPVL + V+ L P +DAT G GG++ + Sbjct: 1 MSERSAHTDTGAAGPYGSPYHVPVLWKAVVEGLVTDPAGCYVDATIGGGGHAAALLDALA 60 Query: 59 --SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDL 111 VI +DRDP A+ + + D + L Q F+ L+ + +DG++ DL Sbjct: 61 PEGRVIGIDRDPEALEAVRRRLSDAIEAGRLQLVQGNFADLEAILDRLGVAQIDGLLLDL 120 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQA 169 GVSS Q+D RGFSFQ GPLDMRM G +A+ ++ + + +L +L GEE +A Sbjct: 121 GVSSHQLDEALRGFSFQAEGPLDMRMDPTSPGPTAAQLLERWSEYELAEVLRRYGEEPRA 180 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI + R P +TT +L+ ++++ V + + R FQALRI VN+E++ L Sbjct: 181 RKLARAICRAR---PIRTTAELAEVVRREVSPKEATKT--LARVFQALRIAVNDELQALE 235 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L +A + ++ GG L+V+S+HSLEDR VK+F + K VR A ++ +T Sbjct: 236 RALEAATRRVRPGGRLVVLSYHSLEDRRVKRFLRYGNLKGEPVRDFY--GRLIAPWRPLT 293 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 ++ + P+ ++VA N R+RSA+LR R E Sbjct: 294 RRAIRPSDDEVAANPRARSARLRIAERVAE 323 >gi|193213705|ref|YP_001999658.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327] gi|263445798|sp|B3QLX2|RSMH_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193087182|gb|ACF12458.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327] Length = 318 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 18/317 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPF 69 H PVL + +LL P + +D T G GG+S + S ++ +D+D + Sbjct: 3 NQEYHEPVLADATTSLLVTRP-GIYIDGTLGGGGHSLELLRRLDALDGESLLVGIDQDSY 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCG 121 A+ + ++D+ ++ L + FS +++ + V G++ DLGVSS QID Sbjct: 62 ALEAAGQKLQDFGDKAILLRGNFSMVRELLAPVKRGPGEGLEVMGLLLDLGVSSFQIDTP 121 Query: 122 DRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFS+ + GPLDMRM G +A+D+VN + L R+ GEE RIA A+V R Sbjct: 122 VRGFSYLRDGPLDMRMDPDGPLTAADIVNDYEEQALARLFFRYGEEAHGGRIARAVVSAR 181 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 AP TT L+ ++++ K++ I +R +QALRI VN+E+ L Q L L Sbjct: 182 SVAPITTTGGLAEVVRRA-CPRKDSPIKTLSRIYQALRIEVNDELGVLQQALEDGFAVLS 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299 GG V+S+HSLEDR+VK+FF++R + + PA + +T+K V + + Sbjct: 241 PGGRFAVISYHSLEDRIVKRFFSARCTADWGPKGLPLREPLKPAEAELVTRKSVQAGEAE 300 Query: 300 VAFNRRSRSAKLRAGMR 316 V+ N R+RSA+LR + Sbjct: 301 VSRNPRARSARLRVIQK 317 >gi|217034743|ref|ZP_03440143.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10] gi|216942736|gb|EEC22294.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10] Length = 324 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 24 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 83 Query: 78 MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 84 LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNFHSHALDM 143 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 144 RMNLEGDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSDF 203 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHSLE Sbjct: 204 LSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCVISFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 D LVK F + + + A+ + +TKK + P+ E++ NRRSRSAK+R Sbjct: 259 DSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKMR 318 Query: 313 AGM 315 Sbjct: 319 VFQ 321 >gi|320011279|gb|ADW06129.1| S-adenosyl-methyltransferase MraW [Streptomyces flavogriseus ATCC 33331] Length = 321 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 182/321 (56%), Gaps = 15/321 (4%) Query: 16 TIGDHVPVLLEKVIALLNP-------APGKVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + HVPV+L++ + LL P P V++D T G GG+S + ++ALDR Sbjct: 2 SQTRHVPVMLQRCLDLLAPALEATGPQPP-VVVDCTLGLGGHSEALLAAFPAARLVALDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123 D A+ E + Y ++ +L A + +L + + V GV+FDLGVSSMQ+D DR Sbjct: 61 DKEALRLSGERLAPYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADR 120 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM + GI A++V+N +L RIL GEEKQA RI A+V+ R+ Sbjct: 121 GFAYAQDAPLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREK 180 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF + L LI+ ++ + K +PA R+FQALRI VN E+ L + + +A ++L Sbjct: 181 EPFSNSARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVRSLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E+VA Sbjct: 241 GGRIAVLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVA 300 Query: 302 FNRRSRSAKLRAGMRTVERSI 322 NRR+ A+LR R E Sbjct: 301 ENRRAAPARLRGAQRIREEER 321 >gi|261337512|ref|ZP_05965396.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM 20093] gi|270277911|gb|EFA23765.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM 20093] Length = 356 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 155/314 (49%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67 + H H PVLLE+ + L+ PA PG V++D T G G++ +F K N ++ +DRD Sbjct: 1 MDHITQIHQPVLLEQCVDLVVPALNAPGSVVVDCTLGLAGHATAFLKAAPNATLLGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ + M ++F A F V V V DLG+SS+QID + Sbjct: 61 AEALALATQRMEHEGLADRFIAVHAAFDDFGQAVDAHGLGPVQAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + +A ++ + L RI GEE+ A +IA IV R Sbjct: 121 RGFSYSHDAPLDMRMDTTQPLTAQTILATYDEASLARIFKDYGEERFARQIARRIVSTRN 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + + +PA R FQALRI VN E+++L + L L Sbjct: 181 REPLTTSAQLNRLVDAVIPQAHRASGNPAKRVFQALRIEVNGELDKLRRTLPQIANRLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLEDR VK F + + + F ++TK + E++ Sbjct: 241 GGRLVVESYHSLEDRTVKTFMQQGLSIDVPADMPVIPDDAQPFFSALTKGALKADAEEIE 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 HNPRSASVRLRAVE 314 >gi|148244441|ref|YP_001219135.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|263504496|sp|A5CX97|RSMH_VESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146326268|dbj|BAF61411.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 307 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 168/307 (54%), Gaps = 14/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H V+ + + LN + +DATFG GG+++ +IA D+D A+ Sbjct: 5 YHQSVMFNESMYALNIKTDGIYIDATFGRGGHAQGILNRLSKKGRLIAFDQDINAIEYAN 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + +L + FS++ + + +DG++ DLGVSS Q++ RGFSF+ G Sbjct: 65 KNL--VDNRLTLIHSAFSKMLSIITKQGLIGRIDGILIDLGVSSPQLENAQRGFSFRVDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G+SA+ + AN +++ ++ EK++ IA+ I K +++ +TT + Sbjct: 123 PLDMRMNQTTGMSATQWLKSANEEEIANVIYQFSNEKKSRHIANKIKKYQKNHVLETTLE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++++ K V KN HPATR+FQA+RIF+N E+++L L ++ L G L ++SF Sbjct: 183 LANIVSKVVKKQKN--KHPATRTFQAIRIFINQELKQLISVLEQSKDILSKNGRLSIISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HS+EDR+VK+F S + + + + K + ++ ++ N+R+RSA Sbjct: 241 HSIEDRIVKRFIQKNSRQKTLPKGLPIIENEIEKTYLKDLGKYLT-SKAEIDNNKRARSA 299 Query: 310 KLRAGMR 316 LR + Sbjct: 300 ILRVASK 306 >gi|281356442|ref|ZP_06242934.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC BAA-548] gi|281317134|gb|EFB01156.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 181/318 (56%), Gaps = 16/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNV--IA 63 M +A +H+PVL +V+ L + P ++ +D T G GG+S + + + Sbjct: 1 MEAA-----FEHIPVLRREVLKYLTFPSDRPARL-IDGTVGGGGHSALLLRRYPQLELLG 54 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDC 120 +DRD A++ ET+ + +L + +S L + VDG++ D+GVSS Q+D Sbjct: 55 IDRDENALAKAAETLAFAGNRVTLVRGDYSSLAGRAAEHGWEEVDGILLDIGVSSPQLDH 114 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFS++ GPLDMRM +AS +N+A+ ++L R+L GE ++ R+A AIVK+ Sbjct: 115 AGRGFSWRAEGPLDMRMDQRSELTASRFLNRASEQELERVLREYGEVDKSRRVAAAIVKK 174 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R++ PF TT DL L + + SK ++ T FQALRI VN+E+ EL + L +AEK L Sbjct: 175 RETHPFATTADLVGLCDEVLGKSKPGKLPAPTLVFQALRIAVNDELGELERALPAAEKLL 234 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298 K GG ++V+SFHSLEDR+VK +F + + + + + +T KVV ++ Sbjct: 235 KKGGRIVVISFHSLEDRIVKNYFRDAAASCICPPGLPVCVCGKQSTLKVLTNKVVTARED 294 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A NRRS A+LRA + Sbjct: 295 ELAENRRSAPARLRAAEK 312 >gi|317177525|dbj|BAJ55314.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F16] Length = 308 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNFHSHALDM 127 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 128 RMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKITERRAKKPFKDAKDLSDF 187 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHSLE Sbjct: 188 LSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCVISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 D LVK F + + + A+ + +TKK + P+ E++ NRRSRSAK+R Sbjct: 243 DALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKMR 302 Query: 313 AGM 315 Sbjct: 303 VFQ 305 >gi|226360238|ref|YP_002778016.1| S-adenosyl-methyltransferase MraW [Rhodococcus opacus B4] gi|262825479|sp|C1AU63|RSMH_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226238723|dbj|BAH49071.1| methyltransferase MraW [Rhodococcus opacus B4] Length = 338 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 18/322 (5%) Query: 20 HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H+PVLL + LL PA G V++DAT G GG+S F + ++ALDRDP Sbjct: 17 HIPVLLHRADELLGPALTANDPHGGGAVMIDATLGLGGHSEHFLRTYPQLRLVALDRDPH 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + ++ + + ++D P + V G++FDLGVSSMQ+D DR Sbjct: 77 ALEIAGGRLAPFADRITFVHTRYDGIEDALTQAGLSPRESVHGILFDLGVSSMQLDESDR 136 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + GI+A++V+N + DL RIL GEE+ A +IA +V++R Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEVVRQRAK 196 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +T+ ++ HPA R+FQALR+ VN E++ L + +A AL Sbjct: 197 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ RS + F+ +T+ +++++ Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEIE 316 Query: 302 FNRRSRSAKLRAGMRTVERSIE 323 N RS +LRA R RS Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338 >gi|207092313|ref|ZP_03240100.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_AG0C1] Length = 308 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 12/309 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDVLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAG 314 SRSAK+R Sbjct: 296 SRSAKMRVF 304 >gi|300702954|ref|YP_003744556.1| s-adenosyl-dependent methyl transferase [Ralstonia solanacearum CFBP2957] gi|299070617|emb|CBJ41912.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum CFBP2957] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 23/324 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDR 66 + T H VL ++ + L + +D TFG GG+SR + G +IA D+ Sbjct: 1 MTTQASTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLLLERLGPGGRLIAFDK 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A++ +F++ +F+ L D V GV+ DLG+SS QID G R Sbjct: 61 DPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGAR 117 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 118 GFSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSE 177 Query: 183 A----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL++A + Sbjct: 178 SGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFER 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKKV 292 L+ GG L+V+SFHSLEDR+VK+F +S R + ++ P + + + Sbjct: 237 LEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-- 294 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 V P++ +V+ N R+RSA +R R Sbjct: 295 VRPSEAEVSANPRARSAIMRVAER 318 >gi|317012519|gb|ADU83127.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Lithuania75] Length = 308 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 169/310 (54%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QKIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N +V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|283953941|ref|ZP_06371470.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 414] gi|283794546|gb|EFC33286.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 414] Length = 309 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K N+ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPNLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ + Q+ F ++ + + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLEHFHDRITFIQSNFGEILEKISHKEDLRGILADIGVSSFQLDNNERGFSLNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA ++VN + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIVNTYTKEQLTSIFKEYGELHDAHFIAEKICLARNKNPIKSAKELCQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K+ + +I AT FQA+RI VN E++ L + E +L +++FHSLED Sbjct: 184 GKSKQNHR--KISKATLVFQAIRIEVNQELKVLKDFFKYLENLKPKNCILAIINFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FF + + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKNFFKKWAKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|67925208|ref|ZP_00518575.1| methyltransferase [Crocosphaera watsonii WH 8501] gi|67852944|gb|EAM48336.1| methyltransferase [Crocosphaera watsonii WH 8501] Length = 292 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 25/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVL + ++ L P LDAT G GG+SR V +D D A++ Q Sbjct: 8 HTPVLPQALLDGLAIDPNGHYLDATLGRGGHSRLILATFPDVRVTGIDLDDEAIATTQGN 67 Query: 78 MRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + ++ ++Q F+ + + +G++ DLGVSS Q D +RGFSF+ PLDMR Sbjct: 68 LSELFGDRLQVWQGNFADYSGKIGE--FNGIIADLGVSSPQFDVAERGFSFRHQAPLDMR 125 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ ++A++++N + L + GEE+++ IA IV+ Q TT ++ Sbjct: 126 MNRQQSLTAAEIINHWDQTSLADLFYQYGEERRSRVIARRIVQ--QRPFETTTALAEAIA 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + RIHPATR FQALRI VN+E+ L + L A LK GG + ++SFHSLED Sbjct: 184 LCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSLED 243 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK F + +TKK ++P E+ A N RSRSAKLR Sbjct: 244 RRVKYSFRDSL-----------------LLDVVTKKPIIPQAEEQANNPRSRSAKLRFAQ 286 Query: 316 RTV 318 R Sbjct: 287 RKA 289 >gi|50842237|ref|YP_055464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes KPA171202] gi|54036174|sp|Q6A9R0|RSMH_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50839839|gb|AAT82506.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes KPA171202] gi|315107070|gb|EFT79046.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL030PA1] Length = 337 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 2 LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 62 GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++VA N RS SA+LR R Sbjct: 302 ADEVATNPRSASARLRVIERV 322 >gi|262831548|sp|A9WRE6|RSMH_RENSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 331 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 183/328 (55%), Gaps = 16/328 (4%) Query: 9 MSSAIHHTIGD-HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM-- 57 M++ HVPVL ++ + LL PA V++DAT G GG+S + Sbjct: 1 MATTPPPADAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFE 60 Query: 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVS 114 ++I +DRD A+ ++ ++++ L A + ++ + + D + +DGV+ DLGVS Sbjct: 61 NLHLIGIDRDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVS 120 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S+Q+D +RGF++ PLDMRM G SA+DVVN + +L I+ GEEK A RIA Sbjct: 121 SLQLDEAERGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIA 180 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGL 232 + IV R PF T +L +I+K V + HPA R+FQALRI VN E+ L + + Sbjct: 181 NRIVAARAEKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAV 240 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 +A AL GG +V+S+HSLED++VKKFF++ + ++ +++TK Sbjct: 241 PAAVDALAIGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGT 300 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVER 320 VPT+ ++A N R+ SA+LRA R R Sbjct: 301 EVPTEAEIAENPRAASARLRAVERIRPR 328 >gi|308062033|gb|ADO03921.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Cuz20] Length = 310 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQKIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|242309935|ref|ZP_04809090.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT 98-5489] gi|239523232|gb|EEQ63098.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT 98-5489] Length = 311 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 94/311 (30%), Positives = 163/311 (52%), Gaps = 14/311 (4%) Query: 16 TIGDHVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 H+ VL ++V+ L G +++D T G GG+S + + + I +D+D Sbjct: 1 MNPPHISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDND 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ + + ++K++FS+ FS+ ++ + G++ D+GVSSMQ D +RGFSF Sbjct: 61 AIALATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + +A D++N ++ +L RI GE ++ ++AH I++ R+ + Sbjct: 121 ESETLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITS 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG-LLI 246 + LS I + K+ +IHPAT +FQALRI VNNE+ EL + L+ E G L Sbjct: 181 AKMLSEFIAR---HFKHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLC 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++SFHSLEDR++K +F + + + + +++ KK + +++ N Sbjct: 238 IISFHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENP 297 Query: 305 RSRSAKLRAGM 315 RSRSAKLRA Sbjct: 298 RSRSAKLRAFE 308 >gi|154174311|ref|YP_001408418.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92] gi|263445746|sp|A7GYX6|RSMH_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112802943|gb|EAU00287.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92] Length = 308 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 10/307 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73 H+ VLL++V+ + +D T G GG+S + + +IA D+D A+ Sbjct: 1 MQSPHISVLLDEVLDAFHGLS-GTFIDCTLGYGGHSGALLEQNKNLRLIACDKDDEAIEF 59 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + ++ ++ ++++ FSQL + + ++ D+GVSS+Q+D +RGFS Sbjct: 60 SKKRLENFGDRVKIYKSDFSQLIKVLSTDELKNVRGILADIGVSSLQLDKNERGFSINSD 119 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 SA+DV+N + ++L I GE A +A IV R + ++ Sbjct: 120 TLDMRMDRACEFSAADVINSYSQQNLAEIFSKYGELSNAKALAAKIVSARNLKKITSAKE 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+S+I + PA +FQA+R+ VN+E+ EL + L S + A + ++SF Sbjct: 180 LASIIG--TGRVNGRSVSPAILAFQAIRVEVNDELGELNRLLESIKSANLKECKVAIISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F S + + + A+ + +TKK +V +Q+++A N RS S Sbjct: 238 HSLEDRIVKNTFKSWAQSCICPPNAMRCKCGNDHAIGKILTKKAIVASQKEIAANPRSSS 297 Query: 309 AKLRAGM 315 AK+R Sbjct: 298 AKMRVFE 304 >gi|295130325|ref|YP_003580988.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137] gi|291376254|gb|ADE00109.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137] gi|313764743|gb|EFS36107.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL013PA1] gi|313791793|gb|EFS39904.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL110PA1] gi|313802120|gb|EFS43352.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL110PA2] gi|313807237|gb|EFS45724.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA2] gi|313809743|gb|EFS47464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL083PA1] gi|313813215|gb|EFS50929.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL025PA1] gi|313815808|gb|EFS53522.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL059PA1] gi|313818283|gb|EFS55997.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL046PA2] gi|313820045|gb|EFS57759.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA1] gi|313823146|gb|EFS60860.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA2] gi|313825577|gb|EFS63291.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL063PA1] gi|313827816|gb|EFS65530.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL063PA2] gi|313838452|gb|EFS76166.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL086PA1] gi|314915234|gb|EFS79065.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA4] gi|314918537|gb|EFS82368.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL050PA1] gi|314919800|gb|EFS83631.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL050PA3] gi|314925467|gb|EFS89298.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA3] gi|314931815|gb|EFS95646.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL067PA1] gi|314955971|gb|EFT00369.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL027PA1] gi|314958366|gb|EFT02469.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA1] gi|314960282|gb|EFT04384.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA2] gi|314963091|gb|EFT07191.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL082PA1] gi|314978268|gb|EFT22362.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL072PA2] gi|314987732|gb|EFT31823.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA2] gi|314990211|gb|EFT34302.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA3] gi|315077555|gb|EFT49613.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL053PA2] gi|315080339|gb|EFT52315.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL078PA1] gi|315084598|gb|EFT56574.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL027PA2] gi|315085934|gb|EFT57910.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA3] gi|315088648|gb|EFT60624.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL072PA1] gi|315098257|gb|EFT70233.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL059PA2] gi|315101052|gb|EFT73028.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL046PA1] gi|315108244|gb|EFT80220.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL030PA2] gi|327332217|gb|EGE73954.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL096PA3] gi|327442839|gb|EGE89493.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL013PA2] gi|327451061|gb|EGE97715.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA3] gi|327452857|gb|EGE99511.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL092PA1] gi|327453584|gb|EGF00239.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL083PA2] gi|328753094|gb|EGF66710.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA1] gi|328753749|gb|EGF67365.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL020PA1] gi|328759161|gb|EGF72777.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL025PA2] gi|332675167|gb|AEE71983.1| ribosomal RNA small subunit methyltransferase H [Propionibacterium acnes 266] Length = 337 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 2 LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 62 GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++VA N RS SA+LR R Sbjct: 302 ADEVATNPRSASARLRVIERV 322 >gi|217032718|ref|ZP_03438203.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128] gi|298736407|ref|YP_003728933.1| S-adenosyl-methyltransferase [Helicobacter pylori B8] gi|216945592|gb|EEC24245.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128] gi|298355597|emb|CBI66469.1| S-adenosyl-methyltransferase [Helicobacter pylori B8] Length = 308 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHTLDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFRD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VNNE+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNNELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKNYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|308182803|ref|YP_003926930.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4] gi|308064988|gb|ADO06880.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4] Length = 308 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 ++A V+N + L +I GE ++ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPIVALEKIFKDYGEIREYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNSFKDYAKNCVCDPLSFKCTCSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|118468497|ref|YP_888512.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2 155] gi|262825134|sp|A0R024|RSMH_MYCS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118169784|gb|ABK70680.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2 155] Length = 326 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 179/313 (57%), Gaps = 15/313 (4%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H+PVLL++ + LL PA P V++DAT GAGG+S F +I LDRDP Sbjct: 9 HIPVLLDRCVELLAPALTRTDPDGTEAVLVDATLGAGGHSERFLTDFPALRLIGLDRDPN 68 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + + + ++ +L + + + + + + +DGV+FDLGVSSMQ+D RGFS Sbjct: 69 ALAIAGDRLAPFGDRVTLVRTRYDGITSALAEAGVRRIDGVLFDLGVSSMQLDQKQRGFS 128 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + +A+++VN + K LTRIL GEE+ A RIA IV+RR PF Sbjct: 129 YSADAPLDMRMDPDALLTAAEIVNTYDAKTLTRILRDYGEERFAGRIADKIVRRRAKQPF 188 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L L+ + + + HPA R+FQALRI VN E++ L + +A AL+ GG Sbjct: 189 TTTSELVELLYEAIPAPARRTGGHPAKRTFQALRIAVNAELDSLRAAIPAALAALRPGGR 248 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+++ SLEDR+VK+ F++ + + H F ++T+ ++++ N Sbjct: 249 IVVMAYQSLEDRIVKQAFSTVTASRTPPGLPMELPGHEPEFVAVTRGAERADEQEIERNP 308 Query: 305 RSRSAKLRAGMRT 317 RS +LRA + Sbjct: 309 RSAPVRLRALEKV 321 >gi|330826599|ref|YP_004389902.1| ribosomal RNA small subunit methyltransferase H [Alicycliphilus denitrificans K601] gi|329311971|gb|AEB86386.1| Ribosomal RNA small subunit methyltransferase H [Alicycliphilus denitrificans K601] Length = 308 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 158/309 (51%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VL + + L AP +D TFG GG++R + ++A D+DP A+ Sbjct: 7 HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIHE 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +FS+ FS L + V GV+ DLG+SS QID RGFSF+ GPL Sbjct: 67 AARI---HDARFSIQHQGFSHLGELPAA-SVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G S ++ + A + ++ GEE+ A IA AIV RR Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I ++ +PATR+FQA RIF+N E+EEL Q L ++ L GG L+V+SFHS Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F A S + M R + P +++ + V P+ +V N R+RSA +R Sbjct: 243 LEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVMR 299 Query: 313 AGMRTVERS 321 RT + Sbjct: 300 VAERTEVPA 308 >gi|184201136|ref|YP_001855343.1| S-adenosyl-methyltransferase MraW [Kocuria rhizophila DC2201] gi|263456204|sp|B2GJQ6|RSMH_KOCRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183581366|dbj|BAG29837.1| methyltransferase MraW [Kocuria rhizophila DC2201] Length = 327 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 177/321 (55%), Gaps = 12/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IA 63 M A HVPVLL++ + LL PA V+LDAT G GG++ + + ++ + Sbjct: 1 MEEA--PAEQRHVPVLLDRCLDLLAPALDTEAPVVLDATLGMGGHTHAMLERFPHLRVVG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120 +DRDP A+ ++ + +F+ T+ + D VDGV+FDLGVSS+Q+D Sbjct: 59 IDRDPQALELAGRRLQRFGSRFASIHTTYDHIADAAAAAGVERVDGVLFDLGVSSLQLDE 118 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGF++ PLDMRM +SA VVN+ + L I+ GE++ A RIA AIV Sbjct: 119 RERGFAYSFDAPLDMRMDSRAELSAYTVVNEYSEARLRDIIFRWGEDRFAPRIARAIVAA 178 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R AP +TT L ++ V + ++ + HPA ++FQALRI VN E++ L + + +A + Sbjct: 179 RADAPLRTTAQLVDAVRSAVPAAAQHKKGHPAKQTFQALRIEVNEELDVLERAIPAAVET 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 ++ GG +I +S+HSLEDR+VK+ FA + + H V + +T+ ++ Sbjct: 239 VRVGGRVIAMSYHSLEDRIVKQEFARGARSTAPRGFPVELPEHQPVLKVLTRGAERADEQ 298 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 + N R+ SA+LRA R E Sbjct: 299 ETLENPRAASARLRAVERLRE 319 >gi|168702508|ref|ZP_02734785.1| methyltransferase [Gemmata obscuriglobus UQM 2246] Length = 293 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 163/305 (53%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VL + +ALL+P P + +D T G G++R + V+ALD+DP ++ + Sbjct: 9 HVSVLPAETLALLDPRPDETWVDCTTGGAGHTRLIAERVGPAGRVLALDQDPTMLALARP 68 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L A F QL + VDGV+ DLG SS Q+ RG SF+ GPL Sbjct: 69 LVAGLP--VELVHANFDQLAEVLAARGIAAVDGVLADLGFSSDQLAERARGLSFRDDGPL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ + G +A+D+VN + L + GEE+ + R+A IV RR PF TT DL+ Sbjct: 127 DMRLDPTSGSTAADMVNSLSEGALADVFWEYGEERHSRRVAKKIVARRAERPFATTADLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ V ++ I PATR FQALRI VN+E+ L + L +K+GG + ++SFHS Sbjct: 187 SVVRSCVP--RSGSIDPATRVFQALRIAVNDELGSLDRLLAVLPTVVKSGGRVGIISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK + V++ +TKK V E+VA N R+RSAKLR Sbjct: 245 LEDRRVKHVLRT-----------------EGVWRPLTKKPVEAGDEEVARNPRARSAKLR 287 Query: 313 AGMRT 317 A R Sbjct: 288 AATRI 292 >gi|197294245|ref|YP_001798786.1| S-adenosyl-methyltransferase MraW [Candidatus Phytoplasma australiense] gi|262824821|sp|B1V910|RSMH_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171853572|emb|CAM11442.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma australiense] Length = 303 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 164/304 (53%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+ VL E+ I+ LN P V +DAT G GG++ S + + D+D A S Q+ Sbjct: 5 HISVLKEEAISFLNINPNGVYVDATLGQGGHTLSILNHLQDGFLYSFDQDLKACSDIQKK 64 Query: 78 MRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + FS L+ +DG++FDLG+SS QID RGFS+ + PLD Sbjct: 65 LNP-NWPIEIIHSNFSNLKLELAKRNVFQLDGILFDLGISSCQIDDSQRGFSYLHNAPLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR +A ++VN + + L I I GEEK+A+ IA I ++ P +T+ DL + Sbjct: 124 MRFDNRQKLTAQEIVNFYSFEKLKNIFHIYGEEKKAALIAKQI---IKNRPLKTSYDLVA 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + F K ++ H A + FQALRI VN E+E L Q L + + LK G ++V+SFHSL Sbjct: 181 ITD---MFYKYHKGHSAKKIFQALRIEVNQELEVLKQALSQSLELLKKDGSIVVISFHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK FF S + I + + ITKK +P++ ++ N RS SAKLR Sbjct: 238 EDRIVKHFFKKNSVFEFPKKLPIMSVDYPQPALRIITKKPCIPSEVEMKNNPRSISAKLR 297 Query: 313 AGMR 316 A ++ Sbjct: 298 AAVK 301 >gi|160872354|ref|ZP_02062486.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli] gi|159121153|gb|EDP46491.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli] Length = 312 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 13/314 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H PVLL +VI L + +DATFG GG++ + IA+D+DP A+ Sbjct: 2 QKQEQHQPVLLTEVIENLVLDKDGIYVDATFGRGGHAGQILQRLSDKGRCIAIDKDPAAM 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + G + + ++F ++Q +FSQL+ V G++FDLGVSS Q++ +RGFSF Sbjct: 62 AFGIQQW-GHDKRFKIYQGSFSQLKTMAEREGVINKVSGILFDLGVSSPQLEKAERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM +GISA++ + A K++ ++L GEE+ A RIA AIV+ ++ P Sbjct: 121 LREGPLDMRMDPLTGISAAEWLAHAKEKEIVKVLKNYGEERYAKRIARAIVEEQKLRPIV 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+++++ + HPATR+FQA+RI +NNE+E+L L + LK GG L+ Sbjct: 181 TTVQLANVVKLAHPHWDRFK-HPATRTFQAIRIQINNELEDLNVSLGQSIDVLKQGGRLL 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + + + ++ + P+ + I + V P + N Sbjct: 240 VISFHSLEDRIVKRFIHQHAHEAVELKKLPFMPAEWKRPRLKKIGRG-VKPDAYAIKTNP 298 Query: 305 RSRSAKLRAGMRTV 318 RSRSA LR + Sbjct: 299 RSRSALLRIAEKIA 312 >gi|325283143|ref|YP_004255684.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus proteolyticus MRP] gi|324314952|gb|ADY26067.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus proteolyticus MRP] Length = 299 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 179/311 (57%), Gaps = 24/311 (7%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 T + H H+PVL ++V+ L PAPG++I+D T G G++R + G+ VI +D+D Sbjct: 2 TQEAVPHTPTLSHLPVLPQEVMDALAPAPGRLIVDGTLGGAGHTRMLLERGATVIGIDQD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRG 124 P+A+S + + + F +Q + VDG++ D+GVSS Q+D +RG Sbjct: 62 PYALSRVE---AEGLAGLRTVRGNFRDMQTLLAGIGVTQVDGILLDIGVSSFQLDDVERG 118 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS+ LDMRMS SG SA+D+VN +L ++ GEEK + R+A AIV RQSAP Sbjct: 119 FSYHSEAALDMRMSQSGPSAADLVNDLEEAELAALIYEYGEEKHSRRLARAIVAARQSAP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L+ +I++ IHPA R+FQALRI VN+E+ L +GL++AE L GG Sbjct: 179 IETTTELADIIKRAYPGFVRG-IHPARRTFQALRIAVNDELGALREGLQAAEALLAPGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDR+VK+F + +TK+ V ++E+ A N Sbjct: 238 LGVISFHSLEDRIVKRFLLGSE-----------------RLRPLTKRPAVASEEEQAANP 280 Query: 305 RSRSAKLRAGM 315 RSRSAKLR+ Sbjct: 281 RSRSAKLRSAE 291 >gi|317014121|gb|ADU81557.1| 16S rRNA m(4)C1402 methyltranserfase [Helicobacter pylori Gambia94/24] Length = 308 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ ++ L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYHLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH IV+RR PF+ Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIVERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|313772507|gb|EFS38473.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL074PA1] gi|313830652|gb|EFS68366.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL007PA1] gi|313833872|gb|EFS71586.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL056PA1] gi|314973654|gb|EFT17750.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL053PA1] gi|314976247|gb|EFT20342.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL045PA1] gi|314983544|gb|EFT27636.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA1] gi|315096274|gb|EFT68250.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL038PA1] gi|327325910|gb|EGE67700.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL096PA2] gi|327446210|gb|EGE92864.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL043PA2] gi|327447807|gb|EGE94461.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL043PA1] gi|328760593|gb|EGF74161.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL099PA1] Length = 337 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 167/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 2 LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 62 GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + HPA R+FQALRI VN E+E L L A Sbjct: 182 ERDRQPIETSGRLVEIITGAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++VA N RS SA+LR R Sbjct: 302 ADEVATNPRSASARLRVIERV 322 >gi|319764380|ref|YP_004128317.1| s-adenosyl-methyltransferase mraw [Alicycliphilus denitrificans BC] gi|317118941|gb|ADV01430.1| S-adenosyl-methyltransferase MraW [Alicycliphilus denitrificans BC] Length = 308 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 158/309 (51%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VL + + L AP +D TFG GG++R + ++A D+DP A+ Sbjct: 7 HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIHE 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +FS+ FS L + V GV+ DLG+SS QID RGFSF+ GPL Sbjct: 67 AARI---HDARFSIRHQGFSHLGELPAA-SVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G S ++ + A + ++ GEE+ A IA AIV RR Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I ++ +PATR+FQA RIF+N E+EEL Q L ++ L GG L+V+SFHS Sbjct: 183 ADIVAGAVKTREPGQNPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F A S + M R + P +++ + V P+ +V N R+RSA +R Sbjct: 243 LEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVMR 299 Query: 313 AGMRTVERS 321 RT + Sbjct: 300 VAERTEVPA 308 >gi|332527095|ref|ZP_08403175.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus JA2] gi|332111526|gb|EGJ11508.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 177/321 (55%), Gaps = 16/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ + T H VLL + + L + +D TFG GG++R+ S V+A D Sbjct: 1 MTA-VTQTGRAHTTVLLAEAVEALVTQADGLYVDGTFGRGGHTRALLAALSPRARVLAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 RDP +F++ A+F +++ + + V GV+ DLGVSS QID + Sbjct: 60 RDPE---AIAAAAAIDDPRFTICHASFGAMREELAARGVGQVQGVLLDLGVSSPQIDTPE 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G +A+D + +A+ + + +++ GEE+ A +IA A+V RRQ Sbjct: 117 RGFSFRFDAPLDMRMDTTRGETAADFLARADERHIAQVIRDYGEERFALQIAKAVVARRQ 176 Query: 182 -SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +TT +LS+L+ + V + + PATR+FQALRIFVN E+E L QGL +A + L Sbjct: 177 GGDQLRTTGELSALVARAVKTREPGQ-DPATRTFQALRIFVNAELEALEQGLSAALQLLA 235 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+V+SFHSLEDR+VK F S R + +++ + V P ++V Sbjct: 236 PGGRLVVISFHSLEDRIVKNFITRESRD-EFDRRAPMAPPRALKLKALAR--VKPGDDEV 292 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N R+RSA +R RT + Sbjct: 293 RANPRARSAVMRVAERTEVPA 313 >gi|314968074|gb|EFT12173.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA1] Length = 337 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 2 LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 62 GIDRDQQALTMAEARLEPFADRVHLVHAVHDELLEVLDDLGLDYVDSVLLDLGLSSFQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++VA N RS SA+LR R Sbjct: 302 ADEVATNPRSASARLRVIERV 322 >gi|208434621|ref|YP_002266287.1| hypothetical protein HPG27_664 [Helicobacter pylori G27] gi|226709921|sp|B5Z772|RSMH_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|208432550|gb|ACI27421.1| hypothetical protein HPG27_664 [Helicobacter pylori G27] Length = 308 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 164/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLVDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ + D + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALEIHGDRIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLNGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPLSFQCTCSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|57236996|ref|YP_178797.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221] gi|68565428|sp|Q5HV88|RSMH_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57165800|gb|AAW34579.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221] gi|315058156|gb|ADT72485.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni S3] Length = 310 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|114799717|ref|YP_761709.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444] gi|123128411|sp|Q0BXT4|RSMH_HYPNA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114739891|gb|ABI78016.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444] Length = 342 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 140/344 (40%), Positives = 197/344 (57%), Gaps = 27/344 (7%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---------SFCKM-GSNVIA 63 H+PV+L +V+ L PA G+VI+D + K V+ Sbjct: 9 SPAEPGHLPVMLAEVLTALAPADGEVIVD---------GTFGGGGYTTAILKAANCTVLG 59 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDC 120 +DRD A+ ++ + F L VDGVV D+GVSS QID Sbjct: 60 IDRDLDAIVRAEKM-AQANPRLVPLLGCFGDLDTLAEQAGHASVDGVVLDIGVSSFQIDQ 118 Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGFSF K GPLDMRM SG SA+DVVN + K L ++ LGEEK + RIA +V+RR Sbjct: 119 ADRGFSFMKDGPLDMRMGGSGPSAADVVNTMSEKGLADVIFRLGEEKNSRRIARVLVQRR 178 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 APF+TT DL++++++ V + R HPAT +FQA+R++VN+E+ ELA+GLR+AE+ LK Sbjct: 179 VQAPFETTADLAAVVEEAVGGRRGARSHPATLTFQAIRMYVNDELGELARGLRAAERILK 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQE 298 GG L+VV+FHSLEDRLVK++ R+G V +P S F+ K V P+++ Sbjct: 239 PGGRLVVVTFHSLEDRLVKQWLRERAGAVPGGSRHMPLMSKGPAPAFELQENKAVQPSEK 298 Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSF--VHLPRLPTLSQFR 340 +V N R+RSAKLRA +RT + D++ ++LP L L + R Sbjct: 299 EVETNPRARSAKLRAAIRTNADAALDEASDGMNLPPLAELEKSR 342 >gi|237743305|ref|ZP_04573786.1| methyltransferase [Fusobacterium sp. 7_1] gi|229433084|gb|EEO43296.1| methyltransferase [Fusobacterium sp. 7_1] Length = 314 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYTAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA D+VN + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|225375622|ref|ZP_03752843.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM 16841] gi|225212601|gb|EEG94955.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM 16841] Length = 312 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 162/312 (51%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 +H VLL + I LN P + +D T G GG++ +I +D+D A++ Sbjct: 1 MEFNHYSVLLNETIENLNIKPDGIYVDGTLGGGGHAYQVASRLSEKGRLIGIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++++ ++ ++ ++ ++ +++ + VDG+V DLGVSS Q+D +RGF+++ Sbjct: 61 AAGERLKEFGDKITIIRSNYANMKEELHRIGVEKVDGIVLDLGVSSFQLDTLERGFTYRD 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 ++A D+VN + DL RI+ GE+K A IA IV+ R P +T Sbjct: 121 ENAPLDMRMDDRQSLTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVQERAKKPIET 180 Query: 188 TQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ +I+ ++ HPA R+FQA+RI +N E+E L L L GG + Sbjct: 181 TGELTEIIRASIPMKVQVTGGHPAKRTFQAIRIELNKELEVLQNNLDDMIDLLNPGGRIC 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK F + + +T+K ++P++E++ N R Sbjct: 241 IITFHSLEDRIVKTNFKRNENPCTCPSDFPVCVCGKKSKGKVVTRKPILPSEEELEVNSR 300 Query: 306 SRSAKLRAGMRT 317 S+SAKLR R Sbjct: 301 SKSAKLRVFERV 312 >gi|21672500|ref|NP_660567.1| hypothetical protein BUsg218 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|8134808|sp|O85295|RSMH_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3435166|gb|AAC32335.1| hypothetical protein [Buchnera aphidicola] gi|21623120|gb|AAM67778.1| hypothetical 36.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 312 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 16/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 ++ TI H+ V+ +++I L + +D TFG GG++ S K + A+DRDP Sbjct: 1 MNQTI-KHISVMKKELIESLKIKKNGIYIDGTFGMGGHALSILKTIGREGRLYAIDRDPN 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGF 125 +V G + ++F + + FS++ +Y + +G++FDLG SS+QI+ RGF Sbjct: 60 SVFIGNQIK---DKRFHIIHSNFSKILNYAKYNNIIGKVNGILFDLGTSSLQIENEKRGF 116 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+K+GPLDMRM+ GISAS+ + ++++ + +L GEE+ + RIA+AI + Sbjct: 117 SFKKNGPLDMRMNPHAGISASEWLFKSDINKIYFVLKNFGEERFSKRIAYAIKDYCKKKK 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L +I+K KN HPA R+FQA+RI++N E+EE+ +GL ++ K LK GG Sbjct: 177 INNTFELVDIIKKAT-PIKNKFKHPAKRTFQAIRIYINQELEEIKKGLENSLKILKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVA 301 L ++SFHSLEDR+VK F S K + + + K+ + PTQ+++ Sbjct: 236 LSIISFHSLEDRIVKNFMMKYSKKATVPYGLPITENKLETLRICKLKIINRIFPTQKEIE 295 Query: 302 FNRRSRSAKLRAGM 315 N R+RS+ LR Sbjct: 296 KNPRARSSVLRTAE 309 >gi|210134911|ref|YP_002301350.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori P12] gi|226709920|sp|B6JLU2|RSMH_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|210132879|gb|ACJ07870.1| S-adenosyl-methyltransferase [Helicobacter pylori P12] Length = 308 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALEMHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N +V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK ++P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGTILTKKPIIPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|148926658|ref|ZP_01810339.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp. jejuni CG8486] gi|145845177|gb|EDK22272.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp. jejuni CG8486] Length = 312 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 6 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 65 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 66 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 125 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 185 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 186 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 243 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 244 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 303 Query: 314 G 314 Sbjct: 304 F 304 >gi|163841237|ref|YP_001625642.1| S-adenosyl-methyltransferase MraW [Renibacterium salmoninarum ATCC 33209] gi|162954713|gb|ABY24228.1| S-adenosyl-methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 382 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 15/320 (4%) Query: 16 TIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALD 65 HVPVL ++ + LL PA V++DAT G GG+S + ++I +D Sbjct: 60 DAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENLHLIGID 119 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 RD A+ ++ ++++ L A + ++ + + D + +DGV+ DLGVSS+Q+D + Sbjct: 120 RDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSLQLDEAE 179 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ PLDMRM G SA+DVVN + +L I+ GEEK A RIA+ IV R Sbjct: 180 RGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANRIVAARA 239 Query: 182 SAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF T +L +I+K V + HPA R+FQALRI VN E+ L + + +A AL Sbjct: 240 EKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPAAVDALA 299 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG +V+S+HSLED++VKKFF++ + ++ +++TK VPT+ ++ Sbjct: 300 IGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEVPTEAEI 359 Query: 301 AFNRRSRSAKLRAGMRTVER 320 A N R+ SA+LRA R R Sbjct: 360 AENPRAASARLRAVERIRPR 379 >gi|15645330|ref|NP_207501.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 26695] gi|8134812|sp|O25411|RSMH_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2313835|gb|AAD07761.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 308 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFMPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N + L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHTLDMRMDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKN 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|315926807|gb|EFV06181.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 310 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|42559428|sp|P60399|RSMH_SPIKU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|37781879|gb|AAP42766.1| putative S-adenosylmethionine-dependent methyltransferase [Spiroplasma kunkelii CR2-3x] Length = 313 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 159/313 (50%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL++ I+ LN + +D T G G+S K + ++D A+ Sbjct: 1 MEFKHQTVLLQEAISGLNVQNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIVV 60 Query: 74 GQETMRDYKE-QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++ K + + + F L K V+G+++DLGVSS Q+D RGFS++ Sbjct: 61 SEEILQKSKYRNYEIIKNNFVNLAAELQLRNVKAVNGILYDLGVSSPQLDDDKRGFSYRY 120 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G++A VVN + + L ++ GEE A IA IV R TT Sbjct: 121 DSPLDMRMNQHQGLTAKTVVNTYSQEALVKLFQDYGEEPFAKVIAKTIVIARNEQEIVTT 180 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+K++ + HPA R FQALRI VN E+ L + LR A L G L+V Sbjct: 181 FHLVEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLRQATTLLAVHGRLVV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VKK+F S + + + + + + ITKKV+V + + N R Sbjct: 241 ISFHSLEDRIVKKYFQSLTKDPNYEINQQLPAISYFESDYHIITKKVIVSSVTEQTNNHR 300 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR R Sbjct: 301 SRSAKLRILERVK 313 >gi|323486709|ref|ZP_08092030.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum WAL-14163] gi|323400090|gb|EGA92467.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum WAL-14163] Length = 314 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ E Sbjct: 5 HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ ++ ++ ++ + + + + + VDG+ DLGVSS Q+D +RGF++++ Sbjct: 65 RLKEFGDKVTIVRSNYENIDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 + ++A D+VN + +L I+ GE++ A IA IV+ RQ +TT +L Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI +N E+E L + L GG L +++F Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLENSIDKMTDLLAPGGRLSIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +T+K ++P++E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304 Query: 310 KLRAGMRT 317 KLR ++ Sbjct: 305 KLRVFEKS 312 >gi|289426145|ref|ZP_06427891.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187] gi|289153310|gb|EFD02025.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187] Length = 337 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 2 LMATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 62 GIDRDQQALTMAEARLESFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 122 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 182 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 242 DRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++VA N RS SA+LR R Sbjct: 302 ADEVATNPRSASARLRVIERV 322 >gi|317124641|ref|YP_004098753.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM 43043] gi|315588729|gb|ADU48026.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM 43043] Length = 371 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 10/315 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVP++ ++++ LL PA PG V +D T G GG++ G VI +DRD Sbjct: 6 PAHERHVPIMRDRILDLLAPALSTPGAVHVDGTLGMGGHAEGVLSRFPGCRVIGVDRDRE 65 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ E + + ++F AT +L + D + VDG+VFDLGVSS+Q+D DRGF+ Sbjct: 66 ALTLAGERLAGFGDRFLPVHATNDELARVLLDSGLQHVDGIVFDLGVSSLQLDEEDRGFA 125 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ PLDMRM G +A+DV+N +V+D+TRIL GEE+ A +IA AIV+ R+ PF Sbjct: 126 YRVDAPLDMRMDQTRGQTAADVLNTYSVEDVTRILREYGEERFARKIAVAIVREREDEPF 185 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T+ L L+++ + S+ HPA R+FQALRI VN+E+ + + +A L GG Sbjct: 186 ATSGRLVELLRRVIPVASQRQSGHPAKRTFQALRIEVNDELGGWERAVAAAIDVLAVGGR 245 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + V+SFHSLEDRL K+ FA + + H +++T+ P +V N Sbjct: 246 MAVLSFHSLEDRLTKRAFALGATSSAPRGLPVELPHHAPYLRALTRGAEEPDDAEVLANP 305 Query: 305 RSRSAKLRAGMRTVE 319 R+ SAKLRA R + Sbjct: 306 RAASAKLRAVERVRD 320 >gi|331696613|ref|YP_004332852.1| ribosomal RNA small subunit methyltransferase H [Pseudonocardia dioxanivorans CB1190] gi|326951302|gb|AEA24999.1| Ribosomal RNA small subunit methyltransferase H [Pseudonocardia dioxanivorans CB1190] Length = 326 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 178/317 (56%), Gaps = 10/317 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPVLL +V+ LL PA V++DAT G GG+S + + + LDRDP Sbjct: 10 PAGARHVPVLLPRVLELLGPALAGRPAVVVDATLGLGGHSAALLAAHPELTLVGLDRDPQ 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + ++ L A + ++ D + + G DGV+FDLGVSS+Q+D +RGFS Sbjct: 70 ALELAGRRLVAFADRTHLVHAVYDRIADVLAELGLPGADGVLFDLGVSSLQLDADERGFS 129 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + LDMRM + G +A+DV+N V +L RIL GEE+ A RIA AI + R PF Sbjct: 130 YSRDADLDMRMDPTTGPTAADVLNTYAVPELARILREYGEERFAGRIAAAIGRARDRRPF 189 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + +L L+ +TV S+ HPA R+FQALRI VN E++ L + +A +L GG Sbjct: 190 TRSSELVELLYETVPAASRRTGGHPAKRTFQALRIEVNGELDALRAAVPAAIDSLTVGGR 249 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+S+HSLEDRLVK+ A+RS + H + + + ++E+V N Sbjct: 250 IVVLSYHSLEDRLVKRELAARSVSTTPQDLPVELPGHGPELRLLVRGSQQASEEEVGENP 309 Query: 305 RSRSAKLRAGMRTVERS 321 R+ S +LRA R E + Sbjct: 310 RAASVRLRAAERIREAA 326 >gi|86149768|ref|ZP_01067997.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596954|ref|ZP_01100190.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 84-25] gi|85839586|gb|EAQ56846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190643|gb|EAQ94616.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 84-25] gi|284925949|gb|ADC28301.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni IA3902] gi|315929134|gb|EFV08361.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 305] Length = 310 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|108563117|ref|YP_627433.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPAG1] gi|122980507|sp|Q1CTG3|RSMH_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|107836890|gb|ABF84759.1| hypothetical protein HPAG1_0692 [Helicobacter pylori HPAG1] Length = 308 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIESLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHTLDMRMDLKSDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFQCTCSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|85058419|ref|YP_454121.1| S-adenosyl-methyltransferase MraW [Sodalis glossinidius str. 'morsitans'] gi|123520087|sp|Q2NVV9|RSMH_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|84778939|dbj|BAE73716.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 315 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + LN P V LD TFG GG+SR + A+DRDP + + Sbjct: 7 HTTVLLDEAVKGLNLRPDSVYLDGTFGRGGHSRLILSKLGAQGRLFAIDRDP---AAIEA 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y+ + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 64 ARAIEDARFAIIHGPFSAMAEYMAQRDLLGKVDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA+ + QA+ +D+ +L GEE+ A RIA AIV + P T++L Sbjct: 124 LDMRMDTTRGQSAAQWLAQASAEDIAWVLKTFGEERFAKRIAQAIVAHNRQQPMTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI ++ HPATRSFQA+RI++N+E+EE+ + L A L GG L V+SFH Sbjct: 184 AALIADA-SPFRDKHKHPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDRLVK+F S + + A K + P+ +++ N R Sbjct: 243 SLEDRLVKQFIRQHSRGPQVPAGLPLTEAQIAAQYQDQRLLKAAGK-MQPSAREISDNPR 301 Query: 306 SRSAKLRAGMRTV 318 +RS+ LR + Sbjct: 302 ARSSVLRFAEKLA 314 >gi|126435853|ref|YP_001071544.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS] gi|262825143|sp|A3Q1M6|RSMH_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126235653|gb|ABN99053.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS] Length = 324 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 18/318 (5%) Query: 19 DHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 +H+PVLL++ + LL P P V++DAT GAGG++ F ++I LDRDP Sbjct: 2 EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ SL + + + D + V G +FDLGVSSMQ+D +RGF Sbjct: 62 QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM ++A+DVVN KD+TRIL GEE+ A+RIA IV+RR P Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT +L L+ + + HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAIPAALGALETGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK FA+ + + H F ++T+ T E++ N Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298 Query: 304 RRSRSAKLRAGMRTVERS 321 RS +LRA + R Sbjct: 299 PRSAPVRLRALEKVAGRP 316 >gi|229820904|ref|YP_002882430.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333] gi|263447254|sp|C5BW67|RSMH_BEUC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229566817|gb|ACQ80668.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333] Length = 333 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 117/319 (36%), Positives = 175/319 (54%), Gaps = 10/319 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63 MS+ H PVL ++ + LL PA G V++DAT G GG+S + + V+ Sbjct: 1 MSTPDAQAAALHAPVLAQRCVDLLAPALESDGAVLVDATLGMGGHSELVLEQCPHARVLG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRDP A+ + + ++F+ A + ++ D V GV+FDLGVSS+Q+D Sbjct: 61 IDRDPRALELATARLARFGQRFTPVHAVYDEIDDVARQHAGGAVQGVLFDLGVSSLQLDD 120 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ + PLDMRM + G +A+D++ A+ +L RIL GEEK A RIA AIV+R Sbjct: 121 AGRGFAYAQDAPLDMRMDPTTGPTAADLLADADEAELRRILRTYGEEKFAPRIAAAIVRR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R++AP + + DL +++ + S + HPA R+FQALRI VN E+E L + L A A Sbjct: 181 REAAPLRRSSDLVEVVRGAIPMSAQRTGGHPAKRTFQALRIAVNRELEVLERALPRAIDA 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V S+HSLEDRLVK+ A + + + +T Sbjct: 241 LAVGGRIVVESYHSLEDRLVKRELARGATSSAPRHLPVVPEEDQPYLELLTHGAEQADDV 300 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++A N R+ S +LRA R Sbjct: 301 ELAANPRAASVRLRAARRI 319 >gi|28493187|ref|NP_787348.1| S-adenosyl-methyltransferase MraW [Tropheryma whipplei str. Twist] gi|28572698|ref|NP_789478.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27] gi|42559466|sp|Q83GN7|RSMH_TROWT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42559467|sp|Q83HJ6|RSMH_TROW8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28410830|emb|CAD67216.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27] gi|28476228|gb|AAO44317.1| unknown [Tropheryma whipplei str. Twist] Length = 317 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 117/319 (36%), Positives = 172/319 (53%), Gaps = 9/319 (2%) Query: 17 IGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVS 72 + H+PV+L +V L+ P G V +DAT GAGG+S + G+ + +DRD +A++ Sbjct: 1 MNGHLPVMLGEVCQLIEPVLGIGDVFIDATLGAGGHSEAILMSSQGALLYGIDRDAYALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + + ++ TF + Y+ + +FDLG+SSMQID DRGFS+ KSGP Sbjct: 61 LARKRLSGFADRCKFVHDTFDKFDKYLSNLHPKVFLFDLGMSSMQIDNPDRGFSYMKSGP 120 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S I+A +++N + L RI G+E+ A RIA I K R + TT + Sbjct: 121 LDMRMNESDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARSVSELVTTCQV 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S LI+ + HPA R FQALRI VN+E+ L L A L+ GG ++V+S+H Sbjct: 181 SQLIRDVCPPHIR-KGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F S S + I ++ I K + P + ++A N R+ SA L Sbjct: 240 SLEDRIVKHLFRSVSVSQLPKGFYI---NKDPEYKLIGKDLKNPKETEIANNPRASSAHL 296 Query: 312 RAGMRTVERSIEDDSFVHL 330 RA R S + V Sbjct: 297 RAVERVHSHSQAEAQIVEP 315 >gi|158316863|ref|YP_001509371.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec] gi|263447093|sp|A8KZA9|RSMH_FRASN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158112268|gb|ABW14465.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec] Length = 327 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 181/313 (57%), Gaps = 10/313 (3%) Query: 19 DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H PVL E+VI LL+P PG V++DAT G GG+S + + +I LDRD A+ Sbjct: 4 THTPVLTERVIQLLDPALRRPGAVVVDATVGLGGHSHALLEAFPQVRLIGLDRDTTALEH 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ L A + QL D + VDGV+FDLGVSSMQ+D +RGF++ + Sbjct: 64 SRRRLTGLGDRVDLEHAVYDQLPDVLDRLGVPSVDGVLFDLGVSSMQLDLDERGFAYSRD 123 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +A+DV+N +V LTR+L GEE+ A RIA A+V +RQ+APF T+ Sbjct: 124 APLDMRMDQERGPTAADVLNNYDVDALTRVLREYGEERFARRIARAVVTQRQAAPFTTSA 183 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L L++ ++ + + +PA R+FQALRI VN+E+E L + + +A AL G L+V+ Sbjct: 184 RLVDLVRDSIPAAARRTGGNPAKRTFQALRIEVNSELEVLERAVPAAFDALAVAGRLVVL 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK+ RS + + + + +T+ + ++ N R+ S Sbjct: 244 SYHSLEDRLVKRVLMPRSVPSVPPDMPVIPDDARPTLRWLTRGAEPASDTEIEQNARAGS 303 Query: 309 AKLRAGMRTVERS 321 +LRA RT Sbjct: 304 VRLRAAERTAAEP 316 >gi|121613568|ref|YP_001000389.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] gi|167005332|ref|ZP_02271090.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] gi|263445762|sp|A1VZ48|RSMH_CAMJJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|87249530|gb|EAQ72490.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] Length = 310 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|307720766|ref|YP_003891906.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM 16294] gi|306978859|gb|ADN08894.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM 16294] Length = 308 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 13/302 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL ++VI +++D T G GG+S + +IA+D+D A+ + Sbjct: 5 PHIPVLYKEVIEAFKDLKEGIVIDCTMGYGGHSSLLLEANQNIKLIAIDQDQTAIDFSSK 64 Query: 77 TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ S+ + FS ++ V + G++ D+GVSS+Q+D +RGFS++ Sbjct: 65 RLEKYGERVSIRKGRFSAVIKEILQEVNPNEIKGILADIGVSSLQLDQKERGFSYESDNL 124 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 + ++AS+VVN+ + +L RIL GE + +IA IV+ R + + Sbjct: 125 DMRMDKDAQLNASNVVNEYSKTELERILLEYGELRNYKKIADVIVQNRPFVSAKELSEAV 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + S+ +IHPAT QA+RI VN+E+ EL L+S E+A + ++SFHS Sbjct: 185 R-----PHMSRGKKIHPATLLMQAIRIEVNDELGELKSLLQSIEEAKLPEAKVAIISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VKK F+ S + + + + +TKK ++ ++++ N RSRSAK Sbjct: 240 LEDRIVKKEFSKWSKSCICPPEAFRCSCGNNHQLGKILTKKPIMAQEDELKENVRSRSAK 299 Query: 311 LR 312 +R Sbjct: 300 MR 301 >gi|300690333|ref|YP_003751328.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum PSI07] gi|299077393|emb|CBJ50018.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum PSI07] Length = 319 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 182/325 (56%), Gaps = 24/325 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ + T H VL ++ + L + +D TFG GG+SR + G +IA D Sbjct: 1 MTTQAN-TGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGD 122 +DP A++ +F++ +F+ L D V GV+ DLG+SS QID G Sbjct: 60 KDPAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGA 116 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 117 RGFSFRMDGPLDMRMDTTRGITAAQWLAEADARDIARVIRDYGEERFAVQIAKAIVARRS 176 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P T +L++L+ + V ++ PATR+FQALRI VN E+ +L GL++A + Sbjct: 177 ESGTRGPLDRTSELAALVAQAV-KTREKGQDPATRTFQALRIHVNQELADLETGLKAAFE 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHP-AVFQSITKK 291 L+ GG L+V+SFHSLEDR+VK+F +S R + ++ P + + + Sbjct: 236 RLEQGGRLVVISFHSLEDRIVKRFMQALARPEQSTAPEMRRAPLRAHELPAPQLRLLGR- 294 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 V P++ +V+ N R+RSA +R R Sbjct: 295 -VRPSEAEVSANPRARSAIMRVAER 318 >gi|218562332|ref|YP_002344111.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20139252|sp|Q9PPL4|RSMH_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112360038|emb|CAL34830.1| S-adenosyl-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 312 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 6 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 65 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 66 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 125 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R ++ ++L +I Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 185 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 186 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLED 243 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 244 RIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 303 Query: 314 G 314 Sbjct: 304 F 304 >gi|313677372|ref|YP_004055368.1| s-adenosyl-methyltransferase mraw [Marivirga tractuosa DSM 4126] gi|312944070|gb|ADR23260.1| S-adenosyl-methyltransferase MraW [Marivirga tractuosa DSM 4126] Length = 301 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H PV+L++ + L P + +D TFG GG+S++ + ++ D+D A Sbjct: 1 MSEYHEPVMLQQCLDGLAIKPNGIYVDLTFGGGGHSKAILEKLTDGKLLGFDQDQDAEVN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + E + K VDGV+ DLGVSS Q + +RGFS + L Sbjct: 61 AEAINHPGFEFVQANFRFVKKYLKLYRIKQVDGVLADLGVSSHQFNKAERGFSTRFDAEL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A +V+N+ + DL +I G+ GE + A +A AIV R ++P T +L Sbjct: 121 DMRMDQHAPVTAKEVINEYSESDLHKIFGLYGEVRNAKTLASAIVSARAASPINTIGELK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + N+ + FQALRI VN E++ L + L E+ +K GG L+V+S+HS Sbjct: 181 EILARFAKRGRENK--YYAQVFQALRIEVNEELKALEEALLQMEEVIKPGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK + + + P F+S+ +K + +E++ N R+RSAKLR Sbjct: 239 LEDRLVKNYINKGKLDGEEEKDFYGNVLKP--FKSVNRKPITAEEEELENNNRARSAKLR 296 Query: 313 AGMR 316 + Sbjct: 297 IAEK 300 >gi|237742793|ref|ZP_04573274.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13] gi|229430441|gb|EEO40653.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13] Length = 314 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N RS S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRSHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|210634276|ref|ZP_03298049.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279] gi|210158878|gb|EEA89849.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279] Length = 306 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 12/305 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-- 78 +L++V+ L + G V D T G G+S ++ +D+D A+ + + Sbjct: 1 MLQEVLEQLQLSAGSVACDCTLGGAGHSVRMAAQVGTEGLLLGIDQDDMALEAAGKRLDA 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 L + F L + + V G +FDLGVSS Q+D RGFS+ + PLDM Sbjct: 61 EAPGTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDAPLDM 120 Query: 136 RMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RM + ++V+N DL RIL I GEEK A +IA IV+RRQ AP TT D Sbjct: 121 RMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREIVRRRQVAPLATTGDFVD 180 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + + + HPA RSFQA+RI VN+E++ L +GL +A + L G + V+S+HS Sbjct: 181 VIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAVRWLNPSGRVCVISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F S + + + + T+K +V T E+VA N R+RSAK+ Sbjct: 241 LEDRIVKRLFQELSQGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVARNPRARSAKI 300 Query: 312 RAGMR 316 R R Sbjct: 301 RCAER 305 >gi|41396357|gb|AAS04222.1| hypothetical protein MAP_1905c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 386 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA P V+LDAT GAGG++ F +IALDRDP Sbjct: 61 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 120 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G DG++FDLGVSSMQ+D +R Sbjct: 121 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 180 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM +A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 181 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 240 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + + HPA R+FQALRI VN+E++ L + L +A AL Sbjct: 241 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 300 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 301 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 360 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 361 RNPRSAAVRLRALQRTQAP 379 >gi|161611203|ref|NP_960839.2| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. paratuberculosis K-10] gi|88911700|sp|P62474|RSMH_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 335 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA P V+LDAT GAGG++ F +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G DG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM +A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + + HPA R+FQALRI VN+E++ L + L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRTQAP 328 >gi|254779311|ref|YP_003057416.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori B38] gi|263456117|sp|C7BZ94|RSMH_HELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|254001222|emb|CAX29192.1| Putative S-adenosyl-methyltransferase MraW [Helicobacter pylori B38] Length = 308 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 167/309 (54%), Gaps = 12/309 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ +K + GV+ DLGVSS+Q+D DRGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDDRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLKSDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRTKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAG 314 SRSAK+R Sbjct: 296 SRSAKMRVF 304 >gi|62184992|ref|YP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydophila abortus S26/3] gi|68565433|sp|Q5L6B5|RSMH_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|62148059|emb|CAH63812.1| putative S-adenosyl-methyltransferase [Chlamydophila abortus S26/3] Length = 298 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 155/314 (49%), Gaps = 25/314 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 MS+ H+PVL+ + ++L K D T GAGG++ +F +++ A D Sbjct: 1 MSATPS-----HIPVLVNECLSLFADRHPKFFCDVTVGAGGHAEAFLSAYPSIVSYDASD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A+S +E + + ++ A+F L + DG++ DLGVSSMQ+D RGF Sbjct: 56 RDVAALSMAKEHLEKFGDRVHFHHASFEDLSKDPREHVYDGILADLGVSSMQLDNLSRGF 115 Query: 126 SFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ GI+AS+V++ ++L +I GEE Q A AIV R+ Sbjct: 116 SFQGDDHALDMRMDVTKGITASEVLHTLREEELGKIFREYGEEPQWKNAAKAIVHFRRRK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL K + +IHP T FQALR++VN E +L L SA + L G Sbjct: 176 KIVTVRDLKEATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G LI++SF S EDR VK FF + +TKKV++PT E++ Sbjct: 236 GRLIIISFCSSEDRPVKWFFREAEKSG--------------LGMILTKKVIMPTYEEIRK 281 Query: 303 NRRSRSAKLRAGMR 316 N R RSAKLR + Sbjct: 282 NPRCRSAKLRCFEK 295 >gi|19705032|ref|NP_602527.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|21759278|sp|Q8R6F5|RSMH_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|19712944|gb|AAL93826.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 314 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D DRGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|262202917|ref|YP_003274125.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247] gi|262086264|gb|ACY22232.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247] Length = 336 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 175/311 (56%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H+PVL ++ LL P+ +V++DAT GAGG++ ++ +DRD A++ Sbjct: 16 HLPVLAARMAELLAPSLESGDERVLVDATLGAGGHAELMLNRFPNLRLVGIDRDAHALAI 75 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130 ++ + ++ SL QA F QL + D +DG+ +FDLGVSSMQ+D RGF++ Sbjct: 76 AEKRLAPMADRISLHQARFDQLPQVLADAAIDGIDGALFDLGVSSMQLDQPGRGFAYAID 135 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G++A+DV+N + +L R+L GEE+ A RIA A++ R+ PF T+ Sbjct: 136 APLDMRMNDEDGLTAADVLNTYSHGELARVLSEYGEERFAGRIASAVIAEREKEPFTTSA 195 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +L+ + + ++ HPA R+FQALRI VN+E++ + + +A A + GG + V+ Sbjct: 196 RLVALLYQAIPAATRRTGGHPAKRTFQALRIEVNHELDAIRAAVPAALDATRVGGRVAVM 255 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLEDR++K+ FA+R+ + F+ IT+ P ++ N RS Sbjct: 256 SYQSLEDRIIKREFATRTTSTSPRGLPVELPGTAPRFRLITRGAERPDAAELERNPRSAP 315 Query: 309 AKLRAGMRTVE 319 ++R R Sbjct: 316 VRVRVIERVAA 326 >gi|308184491|ref|YP_003928624.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180] gi|308060411|gb|ADO02307.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180] Length = 308 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N V L +I GE K+ +IAH I +R PF+ Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERCAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|260495075|ref|ZP_05815204.1| MraW methylase [Fusobacterium sp. 3_1_33] gi|260197518|gb|EEW95036.1| MraW methylase [Fusobacterium sp. 3_1_33] Length = 314 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P V +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA D+VN + L++I+ GEE+ A +IA IV+ R+S+P T DL Sbjct: 128 LDMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIGKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|225850230|ref|YP_002730464.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1] gi|262824804|sp|C0QP68|RSMH_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225646628|gb|ACO04814.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1] Length = 293 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 22/308 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 + +H PVL +V++ G+ I+DAT G GG+S K +I +D+D +A+ Sbjct: 1 MVEHYPVLHREVLSFFKNIKGRYIVDATVGGGGHSFLLLKNLPETFLIGIDKDDYALEKA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131 +E + +K +F L + +F + V + V +FDLGVS+ Q+ +RGFSFQ+ Sbjct: 61 EEKLSPFKGRFRLIKGSFKDIDTIVHSMDIKYVSGVLFDLGVSTFQLKT-ERGFSFQREE 119 Query: 132 PLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + + VVN+ +L +I+ GEEK A RIA AIV+ R+ +TT++ Sbjct: 120 PLDMRMDRTQKKTAFDVVNRYTKIELEKIIKDYGEEKFARRIASAIVEARKKKRIETTKE 179 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + RIHPAT++FQA+RI VNNE+EE+ +G+ L+ GG++ V+S Sbjct: 180 LAQIVYNVYPPPLRRGRIHPATKTFQAIRIEVNNELEEIKEGVNKGIDLLEKGGIIAVIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK + R + +TKK + P E++ N SRSA Sbjct: 240 FHSLEDRIVKNIYRERKRLKDI--------------EILTKKPITPGTEEIRENPPSRSA 285 Query: 310 KLRAGMRT 317 KLR R Sbjct: 286 KLRVAKRI 293 >gi|145296128|ref|YP_001138949.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum R] gi|263447419|sp|A4QFN1|RSMH_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|140846048|dbj|BAF55047.1| hypothetical protein [Corynebacterium glutamicum R] Length = 337 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 107/326 (32%), Positives = 166/326 (50%), Gaps = 24/326 (7%) Query: 20 HVPVLLE-------KVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 HVPV+ + + + L VI+DAT GAGG++ F +I LDRD A Sbjct: 12 HVPVMRDRMAALIAENVEALG--ENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNA 69 Query: 71 VSCGQETMRDYKEQFSLFQATFS-----------QLQDYVPDKGVDGVVFDLGVSSMQID 119 + + + + E+F Q F + D + G+ G +FDLGVSSMQ+D Sbjct: 70 LRDARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLD 129 Query: 120 CGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGF+++ PLDMRM GI+A+D++N + D+ RIL G+E+ A +IA A++K Sbjct: 130 QVERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLK 189 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF T+ L L+ + ++ HPA R+FQALR+ VNNE++ L L Sbjct: 190 EREKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITD 249 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL GG + +S+ S ED+LVKKFF + + F+ +T+ ++ Sbjct: 250 ALNVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASE 309 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIE 323 ++ N R+ K+RA R S + Sbjct: 310 AEIEENPRAAPVKVRAIERIANNSGD 335 >gi|83589686|ref|YP_429695.1| methyltransferase [Moorella thermoacetica ATCC 39073] gi|123524773|sp|Q2RK87|RSMH_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83572600|gb|ABC19152.1| methyltransferase [Moorella thermoacetica ATCC 39073] Length = 318 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 173/320 (54%), Gaps = 33/320 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP---------- 68 H PVLL +V+ LL+P PG+ +DAT G GG+SR+ P Sbjct: 4 THQPVLLTEVLHLLDPQPGEFFVDATVGGGGHSRAIL------------PRLLPGGHLLG 51 Query: 69 -----FAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDC 120 AV+ +E + + + QA F + + GVDG++FDLGVSS Q+D Sbjct: 52 LDRDAEAVAAARERLAAFGANVEIVQANFRDLAAILEARGIPGVDGLLFDLGVSSYQLDN 111 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+Q PLDMRM +A++VVN + LTR++ GEE+ A RIA IV Sbjct: 112 PERGFSYQVDAPLDMRMGQDQELTAAEVVNNWPEEKLTRVIWQYGEERWAPRIAAFIVAS 171 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P TT L ++I++ + ++ + HPA R+FQALRI +N E++ L L + Sbjct: 172 RRQRPITTTGQLVAIIKEAIPAGARRSGHHPAKRTFQALRIAINGELDALRAALEQLDSI 231 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQ 297 LK GG + V+SFHSLEDR+VK+ F S SG+ + + V +T+K V+PT Sbjct: 232 LKPGGRVGVISFHSLEDRIVKEAFRSLSGRCTCPPGLPVCTCGRREVLVPVTRKPVIPTA 291 Query: 298 EDVAFNRRSRSAKLRAGMRT 317 ++ N R+RSAKLR R Sbjct: 292 AEIVANPRARSAKLRVARRV 311 >gi|323692152|ref|ZP_08106395.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Clostridium symbiosum WAL-14673] gi|323503726|gb|EGB19545.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Clostridium symbiosum WAL-14673] Length = 314 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ E Sbjct: 5 HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ ++ ++ ++ + + + + + VDG+ DLGVSS Q+D +RGF++++ Sbjct: 65 RLKEFGDKVTIVRSNYENVDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 + ++A D+VN + +L I+ GE++ A IA IV+ RQ +TT +L Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI +N E+E L + + L GG L +++F Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLEKSIDKMTDLLAPGGRLSIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +T+K ++P++E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304 Query: 310 KLRAGMRT 317 KLR ++ Sbjct: 305 KLRVFEKS 312 >gi|157414980|ref|YP_001482236.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81116] gi|263445755|sp|A8FLC2|RSMH_CAMJ8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157385944|gb|ABV52259.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81116] gi|307747617|gb|ADN90887.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Campylobacter jejuni subsp. jejuni M1] gi|315931891|gb|EFV10846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 327] Length = 310 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|296116429|ref|ZP_06835043.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC 23769] gi|295977022|gb|EFG83786.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC 23769] Length = 340 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 121/311 (38%), Positives = 172/311 (55%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ L P G LD TFG GGY+R+ + A+DRDP A++ G Sbjct: 15 HIPVMLAEVLCDLAPRDGATYLDGTFGGGGYARAILSAAECTLWAIDRDPAAIARGAALA 74 Query: 79 RDYKE-----QFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 + + + L + F + + +GVD VV DLGVSS QID +RGFSF+ Sbjct: 75 TSFPDGQEQSRLRLIKGGFGDMASLLAARGVDALDGVVLDLGVSSYQIDQPERGFSFRMD 134 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G +A+DVVN+ +L I+ GEE+ + R+A AIV R P TT Sbjct: 135 GPLDMRMGDEGTTAADVVNRYQESELADIIYTYGEERMSRRVARAIVAARAENPITTTAA 194 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ V + + I PATR+FQ LRI+VN+E+ ++ +GL A L GG L+VVSF Sbjct: 195 LADIVRSVVRADR-SGIDPATRTFQGLRIYVNDELGQIERGLEQALGLLAPGGRLVVVSF 253 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 HSLEDRLVK SG++ P + F+ + K + P+ + N R+ Sbjct: 254 HSLEDRLVKLAMNRASGRMPGPSRHDPGAAMQSTQRPAFRLVRNKAIRPSDTECRHNPRA 313 Query: 307 RSAKLRAGMRT 317 RSA+LR R Sbjct: 314 RSARLRTVERV 324 >gi|289766581|ref|ZP_06525959.1| methyltransferase [Fusobacterium sp. D11] gi|289718136|gb|EFD82148.1| methyltransferase [Fusobacterium sp. D11] Length = 314 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D +RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA I++ R+S+P + T DL Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P ++ N RS S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRSHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|86151694|ref|ZP_01069908.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 260.94] gi|315124195|ref|YP_004066199.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841323|gb|EAQ58571.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 260.94] gi|315017917|gb|ADT66010.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 310 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|294784753|ref|ZP_06750041.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27] gi|294486467|gb|EFG33829.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27] Length = 314 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|225351427|ref|ZP_03742450.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157771|gb|EEG71054.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 343 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 160/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H PVLL + L+ P PG + +D T G G+S +F K +I +DRD Sbjct: 1 MTDVTTIHQPVLLRDCVDLVVPALARPGSIAVDCTLGLAGHSTAFLKASPQARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A+S + MR ++F A F + D+ V+ V DLG+SS+QID + Sbjct: 61 TEALSLATQRMRMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + +A ++ + + DL RI GEE+ + +IA IV+RR+ Sbjct: 121 RGFSYSHDAPLDMRMDVTQPLTAEQILAEYSFADLVRIFRTYGEERFSKQIAREIVRRRE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 IEPLTTSGQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F + + F+ +T+ + +E++A Sbjct: 241 GGRLVVESYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAAEEEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 MNPRSASVRLRAVE 314 >gi|317010927|gb|ADU84674.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SouthAfrica7] Length = 308 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 168/310 (54%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ + P V++D T G GG+S++ + +I +D+D A Sbjct: 1 MQGIENLHQSVLLQEVLQVFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++E++ + F++ + + GV+ DLGVSS+Q+D DRGF+F Sbjct: 61 QEIAKERLKTFEERYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDDRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N +V L +I GE K+ +IAH IV+RR PF+ Sbjct: 121 HSPTLDMRMDLESELNAQKVINSYSVVALEKIFKDYGEIKEYKKIAHHIVERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAIRIEVNHELEELKEFLQDA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDALSFKCTCSNNHALGEILTKKPITPSPEEIKRNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|239931801|ref|ZP_04688754.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 309 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 178/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL P PG V++D T G GG+S + + ++ALDRD A+ E + Sbjct: 1 MLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLSGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + E+ +L A + +L D + V GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + L L Sbjct: 121 RMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSARLVEL 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A KAL G + V+S+HSL Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AQRIRE 306 >gi|256028668|ref|ZP_05442502.1| methyltransferase [Fusobacterium sp. D11] Length = 331 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 25 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSK 84 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D +RGFS++ Sbjct: 85 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVK 144 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA I++ R+S+P + T DL Sbjct: 145 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDL 204 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 205 ITLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFH 262 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P ++ N RS S+K Sbjct: 263 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRSHSSK 322 Query: 311 LRAGMRT 317 LR R Sbjct: 323 LRILERI 329 >gi|256846119|ref|ZP_05551577.1| MraW methylase [Fusobacterium sp. 3_1_36A2] gi|256719678|gb|EEU33233.1| MraW methylase [Fusobacterium sp. 3_1_36A2] Length = 314 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 8 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ Sbjct: 68 KRLEKFGSKWKVFKGNFENIDTIAYMASVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 246 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 305 Query: 311 LRAGMRT 317 LR R Sbjct: 306 LRILERI 312 >gi|21672883|ref|NP_660948.1| hypothetical protein CT0042 [Chlorobium tepidum TLS] gi|25090698|sp|Q8KGC6|RSMH_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21645935|gb|AAM71290.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 318 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 167/314 (53%), Gaps = 18/314 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV------IALDRDPFAVS 72 H PVL + ++LL P + +D T G GG+S + + + +D+D A+ Sbjct: 6 YHEPVLARESVSLLVTLP-GIYIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTHALE 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRG 124 + + ++ ++ L + F +++ V V G + DLGVSS QID +RG Sbjct: 65 AAGKKLGEFGDRRRLVRGNFGMVKELVEPMMRGAGNGLPVMGFLLDLGVSSFQIDTPERG 124 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ K GPLDMRM G +A+D+VN L ++ GEE RIA AIV R SA Sbjct: 125 FSYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLGGRIARAIVSARSSA 184 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P TT +L+ +I + K+ I +R +QALRI VN+E+ L Q L + L +GG Sbjct: 185 PLTTTGELAEVI-RAACPRKDLAIKTLSRIYQALRIEVNDELGVLEQALEDGFELLSSGG 243 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAF 302 V+S+HSLEDR+VK+FFA+++ + + + PA + +K + T E+++ Sbjct: 244 RFAVISYHSLEDRIVKRFFAAKTSADWGPKGLALREPLKPAEAVLVVRKPLEATAEEISR 303 Query: 303 NRRSRSAKLRAGMR 316 N RSRSA+LR + Sbjct: 304 NPRSRSARLRVIQK 317 >gi|91200077|emb|CAJ73120.1| similar to S-adenosyl-dependent methyltransferase [Candidatus Kuenenia stuttgartiensis] Length = 299 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 22/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV++++V+ L PG +ILD T G GG++ +I +D+D ++ +E Sbjct: 10 HEPVMVDEVLEYLCLQPGSIILDCTVGGGGHAGKIMDRIKPDGCLIGIDKDFDMLNMTKE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F L+ A + + + GV GV+ DLG SS+Q D +RGFSF K GPL Sbjct: 70 CLSDRGCPFKLYHADYVDADEVLRQAGIDGVHGVLLDLGASSLQFDSAERGFSFSKEGPL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + A D++ + + +DL +L GEE+ + RIA I+K R + ++T L+ Sbjct: 130 DMRMDRTASFMAQDLLRKISERDLQALLKKYGEERWSKRIARRIIKERSVSGLKSTTQLA 189 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ V + +RIHPATR FQALRI VN E+E L + L ++ G + V+SFHS Sbjct: 190 RIIERAVPSMR-HRIHPATRVFQALRIAVNKELESLEKFLNKIHFSMVKGARIAVISFHS 248 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +F ITKK + P ++ N RSRSAKLR Sbjct: 249 LEDRIVKNSFIEME--------------DKNIFHIITKKPLRPGASEIERNARSRSAKLR 294 Query: 313 AGMRT 317 R Sbjct: 295 VAERI 299 >gi|269795582|ref|YP_003315037.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542] gi|269097767|gb|ACZ22203.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542] Length = 346 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 179/311 (57%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 T H+PVLL++ + LL PA PG V +D T G GG++ + + VI +DRDP A Sbjct: 22 TSDRHLPVLLDRCVELLAPALSVPGAVYVDCTLGMGGHTEAILERLPEVRVIGIDRDPQA 81 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + + +F+ A + ++ D V ++G V G++ DLGVSS+QID +RGFS+ Sbjct: 82 LELAGARLERFGSRFTGVHAVYDEIGDVVAEQGLTGVQGILMDLGVSSLQIDERERGFSY 141 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + ++A+DV+N + +DL RIL GEE+ AS+IA +IV +R++ P++ Sbjct: 142 AQDAPLDMRMDSTASLTAADVLNTYSERDLARILREYGEERFASKIARSIVAKREARPWE 201 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + DL L++ + ++ +PA R+FQALRI VN E+E L + L +A +AL GG + Sbjct: 202 RSADLVDLVRACIPAATRKGTGNPAKRTFQALRIEVNGELEVLERALPAAVEALAVGGRI 261 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V S+HSLEDRL K+ + + H +T+ + ++ N R Sbjct: 262 VVESYHSLEDRLTKRELGRGAVSSAPHDLPVEPETHKPYLSLLTRGAEEADEAELERNPR 321 Query: 306 SRSAKLRAGMR 316 S S +LRA R Sbjct: 322 SASVRLRAAER 332 >gi|54023726|ref|YP_117968.1| S-adenosyl-methyltransferase MraW [Nocardia farcinica IFM 10152] gi|115311586|sp|Q5YYY7|RSMH_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54015234|dbj|BAD56604.1| putative methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 175/317 (55%), Gaps = 13/317 (4%) Query: 18 GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVLLE+ LL PA PG V +DAT G GG++ F ++ LDRD A+ Sbjct: 8 ARHVPVLLERADELLGPALTEPGAVYVDATLGLGGHAEHFLTRYPGLRLVGLDRDTEALR 67 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 E + + E+ +L + + D P V ++ DLGVSSMQ+D +RGF+ Sbjct: 68 LAGERLAPFAERITLVHTRYDGIADALGQAGLPPTGSVSAILMDLGVSSMQLDEAERGFA 127 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + GI+A+DV+N + DL R+L GEE+ A +IA +++RR PF Sbjct: 128 YSVDAPLDMRMDPTSGITAADVLNTYSHGDLARVLKNYGEERFAGKIASEVIRRRAHKPF 187 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ +L L+ T+ + + HPA R+FQALR+ VN E++ L L +A AL+ GG Sbjct: 188 ETSGELVELLYATIPAAARRTGGHPAKRTFQALRVEVNGELDSLRAALPAALDALRVGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+S+ SLEDR+VK+ A+R+ V + F+ +T+ + ++A N Sbjct: 248 IVVMSYQSLEDRVVKQELAARTSSRTPVDLPVELPGMGPEFRLLTRGAEKAGEREIAENP 307 Query: 305 RSRSAKLRAGMRTVERS 321 R+ ++RA R S Sbjct: 308 RAAPVRMRAAERIEAAS 324 >gi|15611713|ref|NP_223364.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori J99] gi|8134818|sp|Q9ZLD4|RSMH_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4155209|gb|AAD06233.1| putative [Helicobacter pylori J99] Length = 308 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 165/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P +++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGILIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 RSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A +L V Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA--RNLKEAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|320352815|ref|YP_004194154.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM 2032] gi|320121317|gb|ADW16863.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 163/301 (54%), Gaps = 25/301 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 +L++V+ L P P + +D T G GG++++ + V+ + D A ++ + Sbjct: 1 MLDEVLHWLQPRPNALYVDGTLGLGGHAQAILEQTAPSGRVVGFEWDDDAAQAARQRLSG 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y ++ S+ ++ L + ++G++ DLGVSS+Q+D +RGFSF+ LDMRM Sbjct: 61 YGDRLSIVHGSYGDLVPELAKLGVVEIEGLLVDLGVSSLQLDRAERGFSFRTDSVLDMRM 120 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +A+ ++ QA+ + L I GEE+QA RIA + + R+ P TT L++++ Sbjct: 121 DRRSPLTAASLIAQASEEQLADIFYHYGEERQARRIARFLAEAREKEPVATTGRLAAIVA 180 Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V ++H AT+ FQALRI VN E+ L + L++A + L G + +++FHSLED Sbjct: 181 EAVPRKYHPAKVHVATKVFQALRIAVNGELNNLTRLLQTAPQVLAEGARVCIITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+ F + ++ +T++ V P+ E++ N R+RSAKLR Sbjct: 241 RIVKQAF-----------------QNNPAYEVVTRRPVEPSAEEIRRNPRARSAKLRVAR 283 Query: 316 R 316 R Sbjct: 284 R 284 >gi|283956102|ref|ZP_06373589.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 1336] gi|283792422|gb|EFC31204.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 1336] Length = 310 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILTIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|315586621|gb|ADU41002.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 35A] Length = 308 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H +LL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSILLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ DK + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 ++A V+N + L +I GE K+ +IAH I +RR PF+ Sbjct: 121 HSHALDMRMDLEGDLNAQKVINSYPMVALEKIFKDYGEIKEYKKIAHKIAERRTKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|88606985|ref|YP_505272.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ] gi|123495035|sp|Q2GK29|RSMH_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88598048|gb|ABD43518.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ] Length = 295 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 129/308 (41%), Positives = 182/308 (59%), Gaps = 23/308 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 + H PVLL +++ LL+P G V +DATFG GGYSR + V+A+D+DP A Q Sbjct: 1 MDSHRPVLLNEMLELLSPKDGAVYVDATFGGGGYSRGILERAKCTVLAIDQDPIASEFYQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F + FS+L++ + VDGVVFD+GVSSMQ+ DRGFSF K GP Sbjct: 61 SLHSQFPGRVHFFLSKFSRLREALQHFDHNQVDGVVFDVGVSSMQLSDPDRGFSFMKEGP 120 Query: 133 LDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTT 188 LDMRM SA+ VN + KD+ ++ G E+ + R+ AI+ R+ + + T Sbjct: 121 LDMRMDMLRSQSKSAATFVNSLSEKDMADVIFYYGGERLSRRVTRAIISARESNNKIRNT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ +I+ V SK N I PATR+FQA+RI+VN+E+EEL GL +A + + GG +IV Sbjct: 181 SDLAKIIRSVVPRSKANPIDPATRTFQAIRIWVNDELEELKAGLEAASQIVGVGGKIIVT 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F + K FQ I KK + PT+++++ N RSRS Sbjct: 241 SFHSLEDRIVKHKFNALREKG---------------FQLINKKAIKPTEKEISENTRSRS 285 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 286 AKLRGIVK 293 >gi|307637393|gb|ADN79843.1| rRNA small subunit methyl transferase H [Helicobacter pylori 908] Length = 308 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 165/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + S +A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 RSHALDMRMDLESESNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|226307047|ref|YP_002767007.1| methyltransferase MraW [Rhodococcus erythropolis PR4] gi|262825456|sp|C1A0Y3|RSMH_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226186164|dbj|BAH34268.1| methyltransferase MraW [Rhodococcus erythropolis PR4] Length = 332 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 172/330 (52%), Gaps = 18/330 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59 M+ HVPVLL + LL PA G ++DAT G GG+S F Sbjct: 1 MNEPSDADGFAHVPVLLHRADDLLGPAITAVGDGGEGAYMIDATLGLGGHSEFFLGKYPG 60 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLG 112 ++I LDRD A+ E + + ++ + T+ ++D + V ++FDLG Sbjct: 61 LHLIGLDRDTNALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLG 120 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQ+D DRGF++ PLDMRM + G++A++V+N + DL RIL GEE+ A + Sbjct: 121 VSSMQLDEADRGFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGK 180 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I+++R+ PF T+ L L+ +T+ ++ HPA R+FQALRI VN E++ L Sbjct: 181 IASEILRQREREPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRA 240 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + + AL GG ++ +S+ SLEDR+VK RS + F+ +T+ Sbjct: 241 AVPAGLDALAVGGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFRILTR 300 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +++++ N RS +LRA R R Sbjct: 301 GAERASEQEIEENPRSAPVRLRAAERISRR 330 >gi|254774999|ref|ZP_05216515.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. avium ATCC 25291] Length = 334 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA P V+LDAT GAGG++ F +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G DG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM +A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + + HPA R+FQALRI VN+E++ L L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRTQAP 328 >gi|118464814|ref|YP_881532.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104] gi|263456513|sp|A0QF44|RSMH_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118166101|gb|ABK66998.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104] Length = 335 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA P V+LDAT GAGG++ F +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G DG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM +A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + + HPA R+FQALRI VN+E++ L L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRTQAP 328 >gi|325995985|gb|ADZ51390.1| rRNA small subunit methyltransferase H [Helicobacter pylori 2018] gi|325997580|gb|ADZ49788.1| S-adenosyl methyltransferase [Helicobacter pylori 2017] Length = 308 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ + + + + DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 RSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V Sbjct: 181 AKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA--RNLKGAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|183602416|ref|ZP_02963782.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683269|ref|YP_002469652.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis AD011] gi|241191230|ref|YP_002968624.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196636|ref|YP_002970191.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis DSM 10140] gi|263445932|sp|C6A8W4|RSMH_BIFLB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445940|sp|C6AJH2|RSMH_BIFAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447580|sp|B8DSU7|RSMH_BIFA0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183218335|gb|EDT88980.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219620919|gb|ACL29076.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis AD011] gi|240249622|gb|ACS46562.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251190|gb|ACS48129.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177346|gb|ADC84592.1| MraW [Bifidobacterium animalis subsp. lactis BB-12] gi|295794223|gb|ADG33758.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 353 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 159/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67 + H PVLL++ + L+ PA V +D T G G++ +F K N VI +DRD Sbjct: 1 MTDFSQIHKPVLLQECVDLVTPALHASDSVAVDCTLGLAGHTIAFLKAAPNATVIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A+ + +F A F Q + + + V V DLG+SS+QID + Sbjct: 61 EEALDKATARIAQEGLSARFVPVHAAFDQFDEVLRAQGVSRVQAVFMDLGLSSLQIDERE 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A +++ + L I GEE+ + IA IV++RQ Sbjct: 121 RGFSYAHDAPLDMRMDTSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRQ 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 S+P +T+ L++L+ + ++ +PA R FQALRI VN E+++L + L L Sbjct: 181 SSPLETSSQLTALVDAVIPAARRGSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLEDR VK F A + F+++TK V ++A Sbjct: 241 GGRLVVESYHSLEDRTVKNFMAQGLRVDAPADMPVIPPDMQPFFKALTKGAVKADAGEIA 300 Query: 302 FNRRSRSAKLRAGM 315 +N RS S +LRA Sbjct: 301 YNPRSASVRLRAVE 314 >gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW [Kitasatospora setae KM-6054] Length = 322 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 179/316 (56%), Gaps = 10/316 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + H+PV+LE+ + L PA PG V++DAT G GG+S + +IA+DR Sbjct: 2 STDSPAPRHIPVMLERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIAVDR 61 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123 DP A+ E + + ++ +L A + ++ + + V GV+FDLGVSSMQ+D DR Sbjct: 62 DPRALELSAERLARFGDRATLVHAVYDEIPRVLDELDVPEVHGVLFDLGVSSMQLDEADR 121 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM GISA++V+N DL RIL + GEE+ A +IA A+++ R+ Sbjct: 122 GFAYSQDAPLDMRMDQTRGISAAEVLNTYGHGDLARILKVYGEERFAGKIASAVLRERER 181 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF + L L++ + ++ +PA R+FQALRI VN E+E L + + A AL Sbjct: 182 EPFTNSARLVELVRNAIPAATRRTGGNPAKRTFQALRIEVNGELEVLDRAIPGALDALAV 241 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+S+ SLEDRLVK++F + + + + +T+ + T+E++ Sbjct: 242 GGRIVVMSYQSLEDRLVKQYFQAGATSTAPPGLPVIPEELQPWLKLLTRGAELATEEEIE 301 Query: 302 FNRRSRSAKLRAGMRT 317 NRR+ +LR R Sbjct: 302 ENRRAAPVRLRVAERI 317 >gi|326440704|ref|ZP_08215438.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces clavuligerus ATCC 27064] Length = 309 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 122/306 (39%), Positives = 177/306 (57%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + +IALDRDP A+ E + Sbjct: 1 MLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLSAERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y E+ +L A + +L + V GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G+SA++V+N +L RIL GEEKQA RI AIV+ R + PF T+ L L Sbjct: 121 RMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSARLVEL 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A AL G + V+S+HSL Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT ++VA NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AQRIRE 306 >gi|238809925|dbj|BAH69715.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 320 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 161/318 (50%), Gaps = 16/318 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIA 63 K + ++ H VLL++ I LN P + +D T G GG+S K +IA Sbjct: 10 KKFLKEVVNKMENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIA 69 Query: 64 LDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQID 119 D+D FA+ ++ + K F L + F ++ D + VDG++ DLG+SS Q+D Sbjct: 70 FDKDTFAIEESRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVD 129 Query: 120 CGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ K+ LDMRM S A VVN + L ++L E K A ++A AI+ Sbjct: 130 NDERGFSYNKNARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIIS 189 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +R P TT +L+ +++ +P FQA+RI VNNE + L Q L+ A + Sbjct: 190 KR---PITTTLELAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIEL 246 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK L V++FHSLED +VK FF S + + I V KV +PT Sbjct: 247 LKPNTSLAVITFHSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNN 300 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N+RSRSAKLR + Sbjct: 301 ELELNKRSRSAKLRVLKK 318 >gi|86153556|ref|ZP_01071760.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843282|gb|EAQ60493.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni HB93-13] Length = 310 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKIFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|167758763|ref|ZP_02430890.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704] gi|167663503|gb|EDS07633.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704] Length = 311 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL++ I LN P + +D T G GG++ C ++I +D+D A+ Sbjct: 1 MEFEHKSVLLDETINGLNIKPDGIYVDGTLGGGGHAYEVCTRLGTKGSIIGIDQDAAAIE 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D+ E+ ++ ++ + ++ + + VDG++ DLGVSS Q+D +RGFS+++ Sbjct: 61 AADARLNDFGEKVTIVRSNYCDMKSRLHELGIDKVDGIILDLGVSSYQLDTAERGFSYRE 120 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A D+VN + DL R++ GE+K A IA IV +R P +TT Sbjct: 121 DAPLDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAQRGKGPIETT 180 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I+ + + HPA R+FQA+RI +N E+E L L + L GG L + Sbjct: 181 GQLTEIIRGAIPMKYQKKSGHPAKRTFQAIRIELNRELEVLRDTLDDMIELLNPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + +T+K ++P++ ++ N RS Sbjct: 241 ITFHSLEDRIVKSAFKKNENPCTCPPDFPVCVCGNVSKGSIVTRKPILPSKYEMEANSRS 300 Query: 307 RSAKLRAGMR 316 +SAKLR R Sbjct: 301 KSAKLRIFER 310 >gi|94984873|ref|YP_604237.1| methyltransferase [Deinococcus geothermalis DSM 11300] gi|263446197|sp|Q1J0B6|RSMH_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94555154|gb|ABF45068.1| methyltransferase [Deinococcus geothermalis DSM 11300] Length = 308 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 113/290 (38%), Positives = 165/290 (56%), Gaps = 18/290 (6%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 PG+VI+D T G G++R + G++VI +D+DP+A++ +E +L Sbjct: 34 PGRVIVDGTLGGAGHTRLLLEAGASVIGIDQDPYALNRAREAQLPQLTVLEGNYRDMREL 93 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKD 155 + VDGV+ D+GVSS Q+D RGFS+ PLDMRM+ SG SA++VVN ++ Sbjct: 94 LAGIGVTQVDGVLLDIGVSSFQLDDAARGFSYHTDAPLDMRMAQSGESAAEVVNGYPEEE 153 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215 L I+ GEE+ + RIA AIV+ R AP Q+T L+ +I++ + IHPA R+FQ Sbjct: 154 LAAIIYEYGEERHSRRIARAIVQARTQAPIQSTVQLAEIIKRAYPGF-SKGIHPARRTFQ 212 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VN+E+ L GLR+AE L GG L V++FHSLEDR+VK+F + Sbjct: 213 ALRIHVNDELGALRDGLRAAEALLTPGGRLAVIAFHSLEDRIVKRFLRAS---------- 262 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325 +S+TK+ V ++E+ N R+RSAKLRA + + Sbjct: 263 -------PTLKSLTKRPVEASEEERGRNPRARSAKLRAAEKVAAPEGLPE 305 >gi|269792475|ref|YP_003317379.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100110|gb|ACZ19097.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio acidaminovorans DSM 6589] Length = 313 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 169/311 (54%), Gaps = 26/311 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 + H+PV+L+K++ LL P +++D T GAGG+SR+ + G+++I +D+D + Sbjct: 1 MTVHIPVMLDKILELLRPWEEVGLVVDGTLGAGGHSRAILERCQGASLIGIDQDQSILDI 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + ++ F + + D V VFDLG+SS Q+D +RGFSF Sbjct: 61 AREVLSPFGDRVRTVLGNFRDVGRILADLGSPRVSAFVFDLGISSWQVDTPERGFSFNYK 120 Query: 131 GPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186 GPLDMRM +A+D+VN ++ +L + GE+ A ++A AI R + P + Sbjct: 121 GPLDMRMDMGRLGSRTAADIVNGWSMAELAALFRRYGEDPFAYQVARAICRHREKEGPIE 180 Query: 187 TTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T + L S+I+ + + R HPA R FQALRI VN+E+ L + L G Sbjct: 181 TCEALVSVIRSAIPAPAQRKMRGHPARRIFQALRIEVNDELGALEELLDQLPSMGSEGCK 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +I +++HSLEDRLVK +G+ + V +T+K +VP++E+V NR Sbjct: 241 VIFITYHSLEDRLVKGRMREWAGQDLGVP--------------LTRKPLVPSEEEVELNR 286 Query: 305 RSRSAKLRAGM 315 R+RSAK+R + Sbjct: 287 RARSAKVRCFV 297 >gi|254382600|ref|ZP_04997958.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces sp. Mg1] gi|194341503|gb|EDX22469.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces sp. Mg1] Length = 310 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 174/306 (56%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL P PG V++D T G GG+S + ++I LDRD A+ E + Sbjct: 2 MLQRCLDLLAPALQKPGAVVVDCTLGLGGHSEALLTRFPEAHLIGLDRDKEALRLSGERL 61 Query: 79 RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L A ++ L + + V G++FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 62 APFGGRVTLVHAIYADLAEVLDGLRIPAVQGILFDLGVSSMQLDEADRGFAYAQDAPLDM 121 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + GISA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 122 RMDQTTGISAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAVVREREKEPFSNSARLVEL 181 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A + GG + V+S+HSL Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLSYHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+ R Sbjct: 242 EDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRRAAPARFRG 301 Query: 314 GMRTVE 319 R E Sbjct: 302 VERIRE 307 >gi|119331204|ref|NP_001073250.1| probable methyltransferase-like protein 15 [Bos taurus] gi|160012244|sp|A0JN95|MET15_BOVIN RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|117306276|gb|AAI26576.1| Methyltransferase 5 domain containing 1 [Bos taurus] gi|296479746|gb|DAA21861.1| putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Bos taurus] Length = 407 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 128/335 (38%), Positives = 184/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + + + ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV GV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ + + + Sbjct: 312 PGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P EDV N R RSAKLRA ++ Sbjct: 372 PLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIK 406 >gi|291384760|ref|XP_002709072.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus] Length = 407 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 137/351 (39%), Positives = 192/351 (54%), Gaps = 41/351 (11%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--V 61 KS S A+ H+PV++++V+ L P G+V LD TFG+GG+SR+ + S+ + Sbjct: 59 KSQDRDSEAMTEL---HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHSRAILQKESDITL 115 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSM 116 ALDRDP A + ++ Y +Q FSQ + + DGV+ DLG SSM Sbjct: 116 YALDRDPTAYAIAEQLSDLYPKQIRAMLGQFSQAEALLTKAGVQPGTFDGVLLDLGCSSM 175 Query: 117 QIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRI 172 Q+D +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A +I Sbjct: 176 QLDAPERGFSIRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKI 235 Query: 173 AHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNE 224 A AIV+ R P TQ L+S+ +Y K H AT++FQALRIFVNNE Sbjct: 236 ASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNE 295 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------ASR 265 + EL GL++A+K L+ GG L+ +SFHSLEDR+VK+F AS+ Sbjct: 296 LNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQKVVQASQ 355 Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + + P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 356 LSSGPENKEEVSAGRAPLMWELINKKVLTPEDQDVQENPRGRSAKLRAAIK 406 >gi|116511689|ref|YP_808905.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactococcus lactis subsp. cremoris SK11] gi|116107343|gb|ABJ72483.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactococcus lactis subsp. cremoris SK11] gi|300071267|gb|ADJ60667.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. cremoris NZ9000] Length = 298 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 156/294 (53%), Gaps = 9/294 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQFSL 87 L P + +DAT G G+S ++ + D+D A + + + + +++ +L Sbjct: 2 LEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVRLSEQLAEDKVTL 61 Query: 88 FQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-S 143 ++ F L+ + + +DG+++DLGVSS Q D RGFS++K LDMRM S S Sbjct: 62 IKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEARLDMRMDQSQTLS 121 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 A +VVN + L RI GE+K + +IA I + R+ P +TT +L+ LI+ + + Sbjct: 122 AYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIELADLIKSALPQKE 181 Query: 204 -NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 + HPA R FQA+RI VN+E+ + + A LK G + V++FHSLEDRL K F Sbjct: 182 LKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITFHSLEDRLTKSIF 241 Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 S + + A + I +K V+ ++E++ FN R+ SAKLR + Sbjct: 242 KEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSAKLRVAQK 295 >gi|314929325|gb|EFS93156.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL044PA1] Length = 337 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP-APGK--VILDATFGAGGYSRSFCKMGS--NVI 62 M++ + HVPV+ +++ LL P V +D T G GG++ + ++ Sbjct: 2 LMATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ ++ + ++ L A +L + + D VD V+ DLG+SS+QID Sbjct: 62 GIDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM G +A+ V+N+++ DL RIL GEEK A RI AIV Sbjct: 122 EVNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + ++ HPA R+FQALRI VN E+E L+ L A Sbjct: 182 ERDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+++HSLEDR VK+ F I + A F +T+ P Sbjct: 242 DRLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++++ N RS SA+LR R Sbjct: 302 ADEMSANPRSASARLRVIERV 322 >gi|297571245|ref|YP_003697019.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM 20595] gi|296931592|gb|ADH92400.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM 20595] Length = 336 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 169/317 (53%), Gaps = 10/317 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGS--NVIALD 65 S HVPVLL+ +I +L PA V++D T G GG+S +F + VI +D Sbjct: 1 MSKTADNNALHVPVLLQPIIDMLGPALEGDSVLIDCTLGMGGHSEAFLRTFPSLRVIGID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCG 121 RD A+ + + ++F T+ + Y VD ++ DLGVSS+Q+D Sbjct: 61 RDEQAIELASARLAPFGDRFQAVHTTYDDVDRVAFTYGKSGCVDAILMDLGVSSLQLDEV 120 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGFS+ + PLDMRM G++A +++N + ++ RIL + GEEK AS+IA AIVKRR Sbjct: 121 DRGFSYSQDAPLDMRMDTSKGMTAGELLNSYSHGEIARILRVYGEEKFASQIARAIVKRR 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + P + T++L+ L++ T+ + +P+ R+FQALR+ VNNE++ L + A +AL Sbjct: 181 EDHPLERTRELADLVRDTIPAPARRKGGNPSKRTFQALRVAVNNELDVLEAAVPRALEAL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG + V S+ SLEDR+VK F I H +T+ + + Sbjct: 241 RVGGRIAVESYQSLEDRIVKDAFNVGLTSTSPAGLPIELADHAPYLAPLTRGAFKADRTE 300 Query: 300 VAFNRRSRSAKLRAGMR 316 N RS S +LR R Sbjct: 301 QELNPRSASVRLRGAER 317 >gi|19553366|ref|NP_601368.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC 13032] gi|62391005|ref|YP_226407.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC 13032] gi|24212026|sp|Q8NNM7|RSMH_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21324936|dbj|BAB99559.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Corynebacterium glutamicum ATCC 13032] gi|41326344|emb|CAF20506.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Corynebacterium glutamicum ATCC 13032] Length = 337 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 107/326 (32%), Positives = 166/326 (50%), Gaps = 24/326 (7%) Query: 20 HVPVLLE-------KVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 HVPV+ + + + L VI+DAT GAGG++ F +I LDRD A Sbjct: 12 HVPVMRDRMAALIAEHVEALG--ENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNA 69 Query: 71 VSCGQETMRDYKEQFSLFQATFS-----------QLQDYVPDKGVDGVVFDLGVSSMQID 119 + + + + E+F Q F + D + G+ G +FDLGVSSMQ+D Sbjct: 70 LRDARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLD 129 Query: 120 CGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGF+++ PLDMRM GI+A+D++N + D+ RIL G+E+ A +IA A++K Sbjct: 130 QVERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLK 189 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF T+ L L+ + ++ HPA R+FQALR+ VNNE++ L L Sbjct: 190 EREKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITD 249 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL GG + +S+ S ED+LVKKFF + + F+ +T+ ++ Sbjct: 250 ALNVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASE 309 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIE 323 ++ N R+ K+RA R S + Sbjct: 310 AEIEENPRAAPVKVRAIERIGNNSGD 335 >gi|221194757|ref|ZP_03567814.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626] gi|221185661|gb|EEE18051.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626] Length = 328 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP--FAVSCG 74 H PV+L +V+ LNP PG+++ D T G G++ K I +D+D + Sbjct: 12 HQPVMLAEVLQQLNPKPGEIVCDCTLGGAGHTVELAKRIVPDGLSIGIDQDDMAHEAAAA 71 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + F L + GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 72 RIAKEVPTAEFLPLKGNFGDLDTLLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 131 Query: 132 PLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +VVN DLTRIL + G+E A RIAH IV+ R++AP +TT Sbjct: 132 PLDMRMDPGKQTPTAQEVVNTYTEADLTRILRVFGDETFAPRIAHRIVEVRKTAPIKTTL 191 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ ++ ++ + HPA ++FQALRI VN+E++ L +GLRSA GG + V+ Sbjct: 192 QLVEVIKASIPAAARRHGGHPARKTFQALRIEVNHELDVLERGLRSAIAWANPGGRICVI 251 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLEDR+VK F+ S + + H + TKK + T E++ N R+R Sbjct: 252 AYHSLEDRIVKHVFSELSQGCICPPDLPVCVCGHVPIVDVKTKKPLTATSEEITQNPRAR 311 Query: 308 SAKLRAGMR 316 SA +R ++ Sbjct: 312 SALMRVAVK 320 >gi|154509049|ref|ZP_02044691.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC 17982] gi|153798683|gb|EDN81103.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC 17982] Length = 335 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 12/317 (3%) Query: 15 HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVLL + + +L P PG V++D T G GG++ + G VI +DRDP Sbjct: 14 PASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQ 73 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ + + +F T+ + V ++ VDGV+ DLGVSS+Q+D DRG Sbjct: 74 AIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRG 133 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ K PLDMRM SG SA+D++ ++ +L RIL GEEK A RIA I++RR A Sbjct: 134 FAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDA 193 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P T +L +I++ + + +PA R+FQALR+ VN+E+ L + L A +L+ G Sbjct: 194 PITRTGELVGIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVG 253 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+V S+ SLEDR+VK S + + + +TK Q + Sbjct: 254 GRLVVESYQSLEDRIVKDVLRRGSTSAAPPGLPVIPDEMAPSLRLLTKGANKADQAEQDH 313 Query: 303 NRRSRSAKLRAGMRTVE 319 N RS S +LR E Sbjct: 314 NPRSASVRLRGAELIRE 330 >gi|149193782|ref|ZP_01870880.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus TB-2] gi|149135735|gb|EDM24213.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus TB-2] Length = 302 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 11/298 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVLL + + L +D T G GG+S + + + +I +D+D A++ + Sbjct: 4 PHVPVLLNETVNLYKNIKKGYFIDCTLGFGGHSEAILEKYPHIKLIGIDQDIDALNFAKN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ Y + S+ + + G++ D+GVSS Q+D +RGF+F + Sbjct: 64 RLKKYANRVEFINKRASEALSELKGLNIAGILADIGVSSFQLDNKERGFTFDSNTLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SA DV+N + L I E ++ +IA I ++ P + ++LS ++ Sbjct: 124 NKNQEFSAKDVINFYDKNSLEEIFKKYAESRKYKKIADLI---IKNRPINSNKELSEILM 180 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + +K FQA+RI VNNE+ EL + L +E G +L +++FHSLEDR Sbjct: 181 QAGIKNK----KDLAPIFQAIRIEVNNELNELEKILDLSEDIAIDGTILGIITFHSLEDR 236 Query: 257 LVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +VK F + + + I + + +TKK + + E++ N RSRSAKLR Sbjct: 237 IVKNRFKEWAKRCICPDEAIKCECGGNNQKGKILTKKPITASNEEIKKNPRSRSAKLR 294 >gi|89902202|ref|YP_524673.1| S-adenosyl-methyltransferase MraW [Rhodoferax ferrireducens T118] gi|122996777|sp|Q21SW1|RSMH_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89346939|gb|ABD71142.1| methyltransferase [Rhodoferax ferrireducens T118] Length = 309 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 163/314 (51%), Gaps = 21/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGS---NVIALD 65 H VLL + + L P +V +DATFG GG+SR + +IA D Sbjct: 2 THTTVLLNEAVDALFCNPDATADASATGAQVYVDATFGRGGHSRLILSRMTPTDRLIAFD 61 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +D A+ + +FS+ FS L + P V GV+ DLG+SS QID RGF Sbjct: 62 KDAEALVEAGNI---HDSRFSIRHQGFSHLDELPPA-SVAGVLLDLGISSPQIDNPARGF 117 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM GIS + + A + + ++ GEE+ A IA AIV RRQ Sbjct: 118 SFRFEGPLDMRMDTTRGISVAQWLANAETEKIAEVIRDYGEERFAGPIAKAIVARRQERG 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 ++ + + ++ +PATR+FQA RIF+N E+EEL Q L ++ L GG Sbjct: 178 PISSTTELAQLVADTVKTREPGQNPATRTFQAFRIFINAELEELQQALAASLLVLAPGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F A S V R + +++ + + P+ +V+ N Sbjct: 238 LVVISFHSLEDRIVKQFIAQHSRDV-YDRRAPFAPPKVMQLKALAR--LRPSAAEVSANP 294 Query: 305 RSRSAKLRAGMRTV 318 R+RSA +R RT Sbjct: 295 RARSAIMRVAQRTA 308 >gi|332976677|gb|EGK13517.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Psychrobacter sp. 1501(2011)] Length = 347 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 176/347 (50%), Gaps = 34/347 (9%) Query: 10 SSAIHHTIGD----HVPVLLEKVIALL---------------NPAPGKVILDATFGAGGY 50 S+A + + H VLL + +A + +P + +DATFG GG+ Sbjct: 7 SAAANPSSPKADFSHETVLLYETVAAVLGKNPTKKSSKATDSDPKVSGIFVDATFGRGGH 66 Query: 51 SRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GV 104 S+ + + D+DP A++ +E + ++ +F+ + + + V Sbjct: 67 SKLLLESLSDDGQLFVFDKDPEAIAVAEEI-AKSDNRVTVVHDSFANITHCLNEHGITQV 125 Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGIL 163 +G++ DLGVSS Q+D G RGFSF + G +DMRM G S + + + ++L +L Sbjct: 126 NGIMADLGVSSPQLDDGSRGFSFMRDGAIDMRMDTSRGQSVGEWLETVDEEELANVLYDF 185 Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNN 223 GEE+ + RIA AI + + + +T +L+ +I++ + + HPAT+SFQA+RIF+NN Sbjct: 186 GEERHSRRIARAIKQMER---YTSTLELAEVIKQAHPKWQKGK-HPATQSFQAMRIFINN 241 Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHP 282 E+ ++ L+ + L G L V+SFHSLEDR +K+F S G+ ++ P Sbjct: 242 ELGDIDSFLQQSLTLLAPEGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPVRP 301 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329 F + + P++ +V+ N RSRSA LR RT S +H Sbjct: 302 RYFSKPKR--IAPSKAEVSVNNRSRSAWLRVATRTDTPYNNAPSELH 346 >gi|288919045|ref|ZP_06413386.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f] gi|288349585|gb|EFC83821.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f] Length = 327 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 179/313 (57%), Gaps = 10/313 (3%) Query: 19 DHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H PVL E+V+ LL PA PG +++D T G GG+S + + +I LDRDP A++ Sbjct: 4 THTPVLTERVVELLTPAMQAPGAIVVDTTVGLGGHSLALLEAFPRARLIGLDRDPRALAY 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D + L + QL D + V+G++FDLGVSSMQ+D +RGF++ + Sbjct: 64 SRHRLADLGTRVDLVHMVYDQLPDALSGLGVAEVNGILFDLGVSSMQLDMDERGFAYSRD 123 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +A+DV+N +V LTRIL GEE+ A RIA A+V RQ+APF T+ Sbjct: 124 APLDMRMDQERGPTAADVLNTYDVDSLTRILRNYGEERFARRIAQAVVSARQTAPFTTSA 183 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + + +PA R+FQALRI VN E++ L + L +A AL GG L+V+ Sbjct: 184 RLVDLIRDAIPAAARRTGGNPAKRTFQALRIEVNTELDVLERALPAAFDALAVGGRLVVL 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK+ R+ + + + + +T+ + +++ N R+ S Sbjct: 244 SYHSLEDRLVKRSLGPRAVPAVPPDMPVIPDEARPTLRWLTRGAEPASDQEIERNARAGS 303 Query: 309 AKLRAGMRTVERS 321 +LRA R Sbjct: 304 VRLRAVERVAAEP 316 >gi|291563991|emb|CBL42807.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SS3/4] Length = 311 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 I +H VLL + + LN P + +D T G GG++ + +I +D+D A++ Sbjct: 1 MIFEHKSVLLMETVDSLNVKPDGIYVDGTLGGGGHAYEVSRRLGEKGRLIGIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +K++ ++ ++ + +++ + + + VDG+ DLGVSS Q+D DRGFS+++ Sbjct: 61 AATERLLPFKDKVTIVRSNYKNIREVLFNLGIEKVDGIYLDLGVSSYQLDTADRGFSYRE 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +A+D+VN + +L RI+ GE++ A IA IV+ R+ P +TT Sbjct: 121 DAPLDMRMDQRNDKTAADIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVREREIHPIETT 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I+ + + HPA R+FQA+RI +N+E++ L + + L GG L + Sbjct: 181 LQLAEIIRGAIPAKIRAEGGHPAKRTFQAIRIELNHELDVLNDSIDTMIDLLNPGGRLSI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + +T+K +VP+ E++ NRRS Sbjct: 241 ITFHSLEDRIVKTRFRTNENPCICPPDFPVCVCGRKSKGRVVTRKPIVPSDEELEENRRS 300 Query: 307 RSAKLRAGMRT 317 +S+KLR R+ Sbjct: 301 KSSKLRVFERS 311 >gi|109947477|ref|YP_664705.1| S-adenosyl-methyltransferase MraW [Helicobacter acinonychis str. Sheeba] gi|122973304|sp|Q17XC0|RSMH_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109714698|emb|CAJ99706.1| S-adenosyl-methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 308 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V +D T G GG+S++ + +I +D+D A Sbjct: 1 MQEIENLHKSVLLQEVLQAFAPLEKGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ + + F++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGCYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 S ++A V+N + L +I G K+ +IAH IV+RR PF+ Sbjct: 121 HSHALDMRMDLESELNAQKVINSYCIVALEKIFKDYGAIKEYKKIAHHIVERRAKKPFKD 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A K G +L V Sbjct: 181 AKDLSDFLSS---LSKNKKIHPATLVFQAIRIEVNRELEELKEFLQDAMKLK--GAILCV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NRR Sbjct: 236 ISFHSLEDALVKNAFKNYAKNCICDALNFKCTCSNNHALGEILTKKPITPSLEEIKHNRR 295 Query: 306 SRSAKLRAGM 315 SRSAK+R Sbjct: 296 SRSAKMRVFQ 305 >gi|108800230|ref|YP_640427.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. MCS] gi|119869358|ref|YP_939310.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS] gi|122976793|sp|Q1B6W3|RSMH_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825146|sp|A1UI62|RSMH_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108770649|gb|ABG09371.1| methyltransferase [Mycobacterium sp. MCS] gi|119695447|gb|ABL92520.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS] Length = 324 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 18/318 (5%) Query: 19 DHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 +H+PVLL++ + LL P P V++DAT GAGG++ F ++I LDRDP Sbjct: 2 EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ SL + + + D + V G +FDLGVSSMQ+D +RGF Sbjct: 62 QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM ++A+DVVN KD+TRIL GEE+ A+RIA IV+RR P Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT +L L+ + + HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAVPAALAALETGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK FA+ + + H F ++T+ T E++ N Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298 Query: 304 RRSRSAKLRAGMRTVERS 321 RS +LRA + R Sbjct: 299 PRSAPVRLRALEKVAGRP 316 >gi|328906989|gb|EGG26755.1| S-adenosyl-methyltransferase MraW [Propionibacterium sp. P08] Length = 346 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP-APGK--VILDATFGAGGYSRSFCKMGS--NVI 62 M++ + HVPV+ +++ LL P V +D T G GG++ + ++ Sbjct: 11 LMATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLV 70 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ ++ + ++ L A +L + + D VD V+ DLG+SS+QID Sbjct: 71 GIDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQID 130 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM G +A+ V+N+++ DL RIL GEEK A RI AIV Sbjct: 131 EVNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVT 190 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + ++ HPA R+FQALRI VN E+E L+ L A Sbjct: 191 ERDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRAL 250 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+++HSLEDR VK+ F I + A F +T+ P Sbjct: 251 DRLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPD 310 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++++ N RS SA+LR R Sbjct: 311 ADEMSANPRSASARLRVIERV 331 >gi|326402227|ref|YP_004282308.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium multivorum AIU301] gi|325049088|dbj|BAJ79426.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium multivorum AIU301] Length = 313 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 137/308 (44%), Positives = 185/308 (60%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL E+ +A+L P V LD TFG GGYS S + V A+DRDP A++ G Sbjct: 7 HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ L + F L + D+GV + VFD GVSS Q+D RGFSF+ GPLDM Sbjct: 67 ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN +L IL GEE+ + RIA AIV+RR + PF+TT DL+++I Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + + I PATRSFQALRI VN E+ E+ + L +A L GG L+ VSFHSLED Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F + +G V A PS A F+++T+ VV P + + A N R+RSA+L Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETAANPRARSARL 305 Query: 312 RAGMRTVE 319 R R Sbjct: 306 RGIERLAA 313 >gi|54114491|gb|AAV29879.1| NT02FT1003 [synthetic construct] Length = 305 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN P + + ATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLPESINDLNINPQGIYIHATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQFSN--FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM GI+AS + + +V DL+ I + GEE+ A +IA I Q Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFH Sbjct: 179 LAELILAT-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSRS Sbjct: 238 SLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRS 296 Query: 309 AKLRAGMR 316 A LR + Sbjct: 297 AILRVVEK 304 >gi|315638233|ref|ZP_07893415.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21] gi|315481769|gb|EFU72391.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21] Length = 304 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 6/300 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL ++V L + LD T G GG+S + KM ++IA D+D A+ +E Sbjct: 4 PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++++ + L+ + FSQ+ + + K + G++ D+GVSS+ +D +RGFS + + Sbjct: 64 RLKEFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSNFLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA DV+N + + L I I GE K + +A I+K R + ++L ++ Sbjct: 124 DKSQSLSAFDVINTYSKEKLADIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILG 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T KN +I A +FQALRI VN E+E L L+ EKA +L ++ FHSLEDR Sbjct: 184 NT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK +F + + I A+ + + ++KK + P +E++ N RS AK+RA Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRAF 301 >gi|329942720|ref|ZP_08291499.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10] gi|332287316|ref|YP_004422217.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC] gi|313847900|emb|CBY16895.1| putative S-adenosyl-methyltransferase [Chlamydophila psittaci RD1] gi|325506769|gb|ADZ18407.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC] gi|328814980|gb|EGF84969.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10] gi|328914560|gb|AEB55393.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci 6BC] Length = 298 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 159/314 (50%), Gaps = 25/314 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 MS+ H+PVL+ + ++L K D T GAGG++ +F +++ A D Sbjct: 1 MSATPS-----HIPVLVNECLSLFANRNPKFFCDVTVGAGGHAEAFLSEYPSIVSYDASD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A+S +E + + ++ A+F L + DG++ DLGVSSMQ+D RGF Sbjct: 56 RDSAALSLAKERLEKFGDRVHFRHASFEDLSKDSKEHVYDGILADLGVSSMQLDNLSRGF 115 Query: 126 SFQ-KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ LDMRM GI+AS+V+N ++L +I GEE Q A A+V R+ Sbjct: 116 SFQGDDHDLDMRMDVTKGITASEVLNTLREEELGKIFREYGEEPQWKNAASAVVHFRKRK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL K + +IHP T FQALR++VN E +L L SA + L G Sbjct: 176 KIITVRDLKDATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDLQLKVFLESAMRWLAPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G LI++SF S EDR VK FF + +TKKVV+PT E+ Sbjct: 236 GRLIIISFCSSEDRPVKWFFREAEKSG--------------LGTILTKKVVMPTYEETRK 281 Query: 303 NRRSRSAKLRAGMR 316 N R RSAKLR + Sbjct: 282 NPRCRSAKLRCFEK 295 >gi|295116225|emb|CBL37072.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SM4/1] Length = 382 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 166/326 (50%), Gaps = 10/326 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H VLL + + LN P + +D T G GG++ G +I LD+D A++ Sbjct: 1 MTFSHTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ Y ++ ++ + + +++ + VDG+ DLGVSS Q+D +RGF++++ Sbjct: 61 AATERLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYRE 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +A D+VN + +L RI+ GE++ A IA IVK RQ +T Sbjct: 121 DDAPLDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIET 180 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +L+ +I+ + + HPA R+FQA+RI +N E++ L + + + L GG L Sbjct: 181 AGELTEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLS 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F + + +T+K ++P+ E+++ N+R Sbjct: 241 VITFHSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKR 300 Query: 306 SRSAKLRAGMRTVERSIEDDSFVHLP 331 S+SAKL + RS + ++F L Sbjct: 301 SKSAKLECSKKQAIRSSKPEAFRGLK 326 >gi|34763068|ref|ZP_00144041.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887267|gb|EAA24365.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 331 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ + Sbjct: 25 YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSK 84 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ Sbjct: 85 KRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVK 144 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 145 LDMRMNIEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 204 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 205 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 262 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I F+ ITKK ++P +++ N R+ S+K Sbjct: 263 SLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSK 322 Query: 311 LRAGMRT 317 LR R Sbjct: 323 LRILERI 329 >gi|289449724|ref|YP_003474673.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184271|gb|ADC90696.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 362 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 170/324 (52%), Gaps = 10/324 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M HVPVLL + + L+ +D T G G+S + + G + A D Sbjct: 29 MREETRSLQFSHVPVLLTECLKALDLKANGTYVDCTAGGAGHSAAILQRLGSGGRLFAFD 88 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQ--ATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DP A + K + A F+ L++ + + VDG++ DLGVSS Q+D Sbjct: 89 KDPTARQAAAAKLAQVKTAATYELIAADFASLREELSKRNVFAVDGILADLGVSSPQLDT 148 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 G+RGF+++ GPLDMRM+ G +A+D++ + LTRI+ GEE+ A+RIA A+VK Sbjct: 149 GERGFAYRLEGPLDMRMNPTCGRTAADILRLEDQATLTRIMREYGEERYAARIAAAVVKT 208 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R++ P T +L LI K V ++ + HPA R FQ+LRI VN+E+ L + L+ A Sbjct: 209 RETKPLTGTGELVDLICKAVPAAARREKQHPAKRVFQSLRIAVNDELGALRKLLQQAPGL 268 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK G L++++FHSLEDRLVK+ F + + ++ +V + Sbjct: 269 LKPDGHLVIITFHSLEDRLVKQAFRRWERPCRCPSGLPCVCGLASQGKADPPHGLVAGKT 328 Query: 299 DVAFNRRSRSAKLRAGMRTVERSI 322 ++A N RSRSA++R R + Sbjct: 329 ELAENPRSRSARVRVFRRNANPPL 352 >gi|148651949|ref|YP_001279042.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1] gi|262825202|sp|A5WBQ1|RSMH_PSYWF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148571033|gb|ABQ93092.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1] Length = 339 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 107/335 (31%), Positives = 167/335 (49%), Gaps = 24/335 (7%) Query: 12 AIHHTIGDHVPVLLEKVIAL------LN---PAPGKVILDATFGAGGYSRSFCKMGS--- 59 + + H VLL + +A LN P + +DATFG GG+S+ S Sbjct: 11 STSKSEFSHETVLLFETVAAVLGEKSLNDNTPKHDGIYVDATFGRGGHSKLLLNYLSDDA 70 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSM 116 + D+DP A+ + + ++ + +F+ + + + VDG++ DLGVSS Sbjct: 71 KLFVFDKDPEAIDVAND-LAAEDKRVIVVHDSFADMTQCLNSRGVSQVDGIMADLGVSSP 129 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D G RGFSF + G +DMRM G + + + + L +L GEE+ + RIA A Sbjct: 130 QLDDGSRGFSFMRDGAIDMRMDTSRGQPVGEWLQTVDEETLADVLYDFGEERHSRRIARA 189 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I Q + +T +L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 190 IKGMTQ---YTSTLELAEVIKQAHPKWQKGK-HPATQSFQAMRIFINNELGDIDSFLAQS 245 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVV 294 L G L V+SFHSLEDR +K+F S G+ ++ P F + + Sbjct: 246 LTLLAPQGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPQRPRYFSKPKR--IA 303 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329 P++ +V N RSRSA LR RT D S H Sbjct: 304 PSKAEVTVNNRSRSAWLRVATRTDTPYNTDPSPQH 338 >gi|86608801|ref|YP_477563.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502541|sp|Q2JLV1|RSMH_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86557343|gb|ABD02300.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-2-3B'a(2-13)] Length = 319 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 125/314 (39%), Positives = 164/314 (52%), Gaps = 35/314 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H VL E+V+A L P G + LD T G GG+S + + G + V+ LDRDP A+ Q Sbjct: 24 HDSVLTEEVMAYLQPQGGGIFLDVTLGGGGHSLALLRGGAARVVGLDRDPAALQAAQARF 83 Query: 79 RD---YKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + L+ F+ + DG+V DLGVSS Q+DC +RGFSF Sbjct: 84 AAEGIPGSRIQLWHLNFADFDLQQHGFRDEQGQGIPFDGIVADLGVSSPQLDCPERGFSF 143 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM S +A+D VN V++L I GEE+ A RIAH I + R P Sbjct: 144 RGEGPLDMRMDPSAAQETAADWVNHRPVEELIEIFTRYGEERFARRIAHHIEQAR---PL 200 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++ + V ++ RIHPATR FQALRI VN E+E L L A LK GG Sbjct: 201 ATTTQLAQVVWQAVPPAARRGRIHPATRVFQALRIAVNRELEALETLLAQAPTWLKPGGR 260 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDRLVK F +Q +T K + P++ + N Sbjct: 261 LAVISFHSLEDRLVKWAFRR-----------------DPRWQVLTPKPLSPSELERQRNP 303 Query: 305 RSRSAKLRAGMRTV 318 R+RSAKLR R+ Sbjct: 304 RARSAKLRVAARSS 317 >gi|329940950|ref|ZP_08290230.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus M045] gi|329300244|gb|EGG44142.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus M045] Length = 310 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L + + LL P PG V++D T G GG+S + ++ALDRD A+ E + Sbjct: 2 MLHRCLDLLAPALERPGAVVVDCTLGLGGHSEALLARFPEVRLVALDRDKEALRLSAERL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y E+ +L A + +L + + V GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 62 APYGERATLVHAVYDELPEVLDRLGLARVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +G SA++V+N +L RIL GEEKQA RI A+V+ R+ PF T+ L + Sbjct: 122 RMDQSTGTSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREREPFTTSARLVEV 181 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + + K +PA R+FQALRI VN E+ L + + +A +AL GG + V+++HSL Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRALDVGGRIAVLAYHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 242 EDRLVKQVFAAGAAGTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301 Query: 314 GMRTVERS 321 +R E + Sbjct: 302 ALRIREDA 309 >gi|315604430|ref|ZP_07879496.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 180 str. F0310] gi|315314136|gb|EFU62187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 180 str. F0310] Length = 341 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 12/326 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG 58 ++ ++ A HVPVLL + + +L PA PG V++DAT G GG++ + Sbjct: 7 SVRASSYLADASRPARERHVPVLLSECLDMLAPAIGAPGAVLVDATLGMGGHTEGALERF 66 Query: 59 SNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDL 111 ++ I +DRDP A++ + + + +F AT+ + + ++ G ++ DL Sbjct: 67 EDLTVIGIDRDPQAIALASDRLERFGARFRAVHATYDHIDRVIEEQCGPGSRVDGILMDL 126 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS+Q+D DRGF++ K PLDMRM + G SA+D++ A+ ++ RIL GEE+ A Sbjct: 127 GVSSLQLDEADRGFAYSKDAPLDMRMDPTTGPSAADLLASASEGEIVRILRTYGEERFAP 186 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELA 229 RIA I++RR AP T +L +++ + + + +PA R+FQALR+ VN+E+ L Sbjct: 187 RIARLIIRRRDEAPITRTGELVDIVRSAIPAPARRSGGNPAKRTFQALRVAVNDELTILE 246 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L A +L+ GG L+V ++ SLEDR+VK + I + + +T Sbjct: 247 RALPRALASLRVGGRLVVEAYQSLEDRIVKDVLRRGATSAAPPGLPIVPDEMAPSLRLLT 306 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGM 315 K Q + N RS S +LR Sbjct: 307 KGANRADQAEQDHNPRSASVRLRGAE 332 >gi|239940578|ref|ZP_04692515.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239987061|ref|ZP_04707725.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291444013|ref|ZP_06583403.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346960|gb|EFE73864.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 313 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 13/312 (4%) Query: 24 LLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 +L++ + LL PA P V++D T G GG+S + +IALDRD A+ Sbjct: 2 MLQRCLDLLAPALQDPAHPDPVVVDCTLGLGGHSEALLAAFPTARLIALDRDKEALRLSG 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ +L A + +L + + V GV+FDLGVSSMQ+D DRGF++ + P Sbjct: 62 ERLAPYGDRATLVHAVYDELPEVLERLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDAP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +G+ A++V+N +L RIL GEEKQA RI AIV+ R+ PF + L Sbjct: 122 LDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSARL 181 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ + + K +PA R+FQALRI VN E+ L + + +A +L GG + V+S+ Sbjct: 182 VELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLAVGGRIAVLSY 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK+ FA+ + + + + +T+ +PT+E+VA NRR+ A+ Sbjct: 242 HSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEEEVAENRRAAPAR 301 Query: 311 LRAGMRTVERSI 322 LR R E Sbjct: 302 LRGAQRIREEER 313 >gi|311741520|ref|ZP_07715344.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium ATCC 33035] gi|311303690|gb|EFQ79769.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium ATCC 33035] Length = 346 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 167/319 (52%), Gaps = 20/319 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ E++ LL P V++DAT GAGG++R F + VI +DRD A+ Sbjct: 16 HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPEARVIGVDRDKQALR 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSMQIDCG 121 E + Y ++F A F +L + + D +FDLGVSSMQ+D Sbjct: 76 NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARSVGIAGALFDLGVSSMQLDQA 135 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM GI+A+DV+N + DL R+L G+E+ A +IA A++K R Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYSHGDLARVLKTYGDERFAGKIASAVLKER 195 Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF + L L+ + ++ HPA R+FQALR+ VN E+E + L +AL Sbjct: 196 DKEPFVNSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ SLEDR+VK F + + F+ +T+ ++E+ Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFKIVTRGAEKASEEE 315 Query: 300 VAFNRRSRSAKLRAGMRTV 318 VA N R+ S ++RA R Sbjct: 316 VAENSRAASVRVRAIERLE 334 >gi|228469401|ref|ZP_04054415.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3] gi|228309085|gb|EEK17715.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3] Length = 310 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 156/308 (50%), Gaps = 11/308 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 T H VL E + LL P + +D T G GG+SR+ + I LD+DP A+ Sbjct: 2 STKLYHTAVLCEDSLNLLVTTPSGLYVDVTMGGGGHSRALLERLSPEGRCIGLDQDPDAM 61 Query: 72 SCGQETMRDYKEQFSLFQATF-SQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + D + F + Q DY VDG++ DLGVSS D +RGFSF+ Sbjct: 62 ANAPQ---DSRYHFVATNFRYLGQWLDYWGLAGEVDGILADLGVSSHHFDSEERGFSFRY 118 Query: 130 SG-PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 DMRM+ SG++A D++ + + L IL GE A RIA +V R T Sbjct: 119 EEAMPDMRMNSRSGVTARDLLLSYSEEQLADILYYYGELHDARRIAALLVSHRAVGYP-T 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L ++ + + +R FQALRI VN+E+ L Q L + + LK GG + + Sbjct: 178 IASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKPGGRIAI 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDR+VK+FF S + + + PA + +TKK + P+ +++A N R+R Sbjct: 238 ISYHSLEDRMVKEFFRLGSFEQPSEALAGMPLSKPAPLRVVTKKAITPSADEIADNNRAR 297 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 298 SAKLRVAE 305 >gi|269127144|ref|YP_003300514.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM 43183] gi|268312102|gb|ACY98476.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM 43183] Length = 337 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 170/310 (54%), Gaps = 14/310 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP----APGK---VILDATFGAGGYSRSFCKMGS-- 59 M + H+PVLL++V++LL P AP + +DAT G GG++ + + Sbjct: 1 MQDSACAAQAGHIPVLLDRVLSLLAPAVESAPAGRDPLYVDATLGMGGHAEAMLQAHPRL 60 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSM 116 +I LDRDP A+ + + ++ L A + +L + + + ++FDLGVSS Sbjct: 61 RLIGLDRDPSAIERAGRRLARFADRVRLVHAVYDELPRVLAELGEPHAEAILFDLGVSSP 120 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF++ PLDMRM + +A+DVVN ++L RIL GEE+ A RIA A Sbjct: 121 QLDEAERGFAYSYDAPLDMRMDPTQPLTAADVVNGYPPEELARILREYGEERHARRIAAA 180 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R+ AP ++T L+ L+++ + ++ + +PA R+FQALRI VN E+ + L + Sbjct: 181 IERERRRAPLRSTGRLAELVRQAIPAPARRSGGNPAKRTFQALRIEVNGELAIWERALPA 240 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A +AL GG + V+S+HSLEDR+ K+ + S + H F+ +T+ Sbjct: 241 ALQALPVGGRVAVLSYHSLEDRITKRVLTACSTDTTPPGLPVSLPEHRPTFRLLTRGAET 300 Query: 295 PTQEDVAFNR 304 P +E++ N Sbjct: 301 PGEEEITANP 310 >gi|172040893|ref|YP_001800607.1| S-adenosyl-methyltransferase MraW [Corynebacterium urealyticum DSM 7109] gi|263446151|sp|B1VHD2|RSMH_CORU7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171852197|emb|CAQ05173.1| S-adenosyl-methyltransferase [Corynebacterium urealyticum DSM 7109] Length = 353 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 186/352 (52%), Gaps = 28/352 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGSN-- 60 ++ + HVPV+ ++++ L+ AP + +I+D T GAGG++ +F + N Sbjct: 4 NTPHDPSSPGHVPVMRQRMVELVGIGVTAGSAPAQPIIVDGTLGAGGHTEAFLEAYPNAI 63 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY-------------VPDKGVDGV 107 VI LDRDP A++ + + + ++F +Q F + + + ++G+ G Sbjct: 64 VIGLDRDPNALAEARARLERFGQRFFSYQTRFDGIGEALEHFSEDPDFPVDIREQGISGF 123 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEE 166 +FDLGVSSMQ+D DRGF+++ PLDMRM S +A++++N +L RIL G+E Sbjct: 124 LFDLGVSSMQLDQEDRGFAYRVDAPLDMRMDPSSRLTAAEILNTYEHGELARILKRYGDE 183 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEI 225 K A +IA A+++ R+ PF+ + L L+ T+ + + HPA R+FQALRI VN E+ Sbjct: 184 KFAGKIASAVIREREKQPFENSARLVDLLYATIPAAARRTGGHPAKRTFQALRIEVNAEL 243 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + +A L+ G + +S+ SLED++VK+ + + F Sbjct: 244 ESLELVIPAAFSWLRVDGAGVFMSYQSLEDKIVKQQLKGMTESSTPPGLPVELPGTEPEF 303 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337 + +T+ +++++A N RS ++RA R + S PR P +S Sbjct: 304 ELLTRGAEKASEQEIAENSRSAPVRVRAARRIGAHA----SGAGGPRYPLVS 351 >gi|241765142|ref|ZP_04763130.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN] gi|241365221|gb|EER60068.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN] Length = 309 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 163/310 (52%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + L G +DATFG GG+SR +++A D+DP A+ Sbjct: 7 HTTVLLDEAVDALLGGAGAAPAGTWVDATFGRGGHSRRILLRLGPQGHLVAFDKDPEAIH 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + V GV+ DLGVSS QID RGFSF+ GP Sbjct: 67 EATRI---TDARFSIRHEGFRHLAELP-AGSVAGVLMDLGVSSPQIDSPGRGFSFRFDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S + + A V+ + ++ GEE+ A IA AIV RR+ T Sbjct: 123 LDMRMDTTRGESVAQWLATAEVQQIAEVIRDYGEERFAGPIAKAIVARREERGPLATTAE 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQALRIF+N E+EEL Q L ++ L+ GG L+V+SFH Sbjct: 183 LADLVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALEASLSVLQPGGRLVVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R A P V + + + P+ +VA N R+RSA + Sbjct: 243 SLEDRIVKQFIAQHSKEVYDRRAPF---APPKVMKLVALDRIKPSAAEVAANPRARSAIM 299 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 300 RVAERTEAPA 309 >gi|71891921|ref|YP_277651.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|88909187|sp|Q493Q9|RSMH_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71796027|gb|AAZ40778.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 329 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 181/321 (56%), Gaps = 19/321 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H VLL + I LN + +D TFG+GG+S+ ++A+D+D Sbjct: 12 MFYIHYSHKSVLLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLL 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 AV G+ + ++F++ ++FS++ ++V + VDG++ DLG+S+ QI+ RGF Sbjct: 72 AVKIGKHI-AEQDDRFTIIHSSFSKMINHVKNIGLIGSVDGILLDLGISTFQINDCSRGF 130 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + G LDMRM SGISA++ +++A+ +++T +L GEE+ A IA +V +R+ P Sbjct: 131 SFMQDGLLDMRMDISSGISAAEWLSKASQENITWVLKNFGEERFAKNIAKILVSKRRYTP 190 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + LS LI + +N HPAT+SF A+R+F+NNE+EE+ Q L+ A L G Sbjct: 191 IIRSIVLSKLICDAI-PHRNMNKHPATKSFLAIRMFINNELEEIMQVLKDALIILSPRGR 249 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQ 297 L+V+SF+SLEDRLVK F S + + +N ++I K + P++ Sbjct: 250 LVVISFNSLEDRLVKYFIREHSCALSIPPKLPLTNNQIFSKYKNKCQLKNIGK--LTPSK 307 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +++ N R+RSA LR + Sbjct: 308 QEIKRNIRARSAILRCAEKLA 328 >gi|269956076|ref|YP_003325865.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM 15894] gi|269304757|gb|ACZ30307.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM 15894] Length = 351 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 182/313 (58%), Gaps = 11/313 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 T H+PVLLE+ + LL PA PG V++D T G GG++ + +V + +DRDP Sbjct: 8 STADRHLPVLLERCVDLLAPALAEPGSVLVDCTLGMGGHTEGVLERLPHVHVVGIDRDPQ 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + + ++F+ A + ++ D V D GV GV+ DLGVSS+Q+D RGF Sbjct: 68 ALRLAAARLARFGDRFTPVHAVYDEIGDVVARLGYDDGVQGVLMDLGVSSLQLDEAGRGF 127 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM + G +A+DV+N + +LTRIL GEE+ A +IA +IV+RR P Sbjct: 128 AYAQDAPLDMRMDQTTGPTAADVLNTYDEHELTRILREYGEERFAGKIARSIVRRRAERP 187 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++ T +L L++ + ++ +PA R+FQALRI VN E+E L + + +A +AL GG Sbjct: 188 WERTAELVDLVRACIPAATRKTGGNPAKRTFQALRIEVNGELEVLERAVPAAIEALAVGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V S+HSLEDR+VK+ A + + H A +++T+ ++A N Sbjct: 248 RIVVESYHSLEDRIVKRAIARGTTSSAPPGLPVEPETHRAYLEALTRGAEEADDAELARN 307 Query: 304 RRSRSAKLRAGMR 316 RS S +LRA R Sbjct: 308 PRSASVRLRAAAR 320 >gi|254459393|ref|ZP_05072814.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD 1] gi|207084006|gb|EDZ61297.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD 1] Length = 307 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 159/308 (51%), Gaps = 15/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ +I+D T G GG+S + N +IA+D+D A+ + Sbjct: 5 PHIPVLYREVVDTFKDIKNGIIIDCTMGYGGHSSMILESNPNIELIAIDQDQTAIDFSTK 64 Query: 77 TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ ++ S+ + FS + + GV+ D+GVSS+Q+D DRGFS++ Sbjct: 65 RLEEFGDRVSIRKGRFSSVIKDIIAEYGVDKIRGVLADIGVSSLQLDQKDRGFSYESENL 124 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 + +SA +VVN+ + +L IL GE + +IA AIV R PF + ++LS Sbjct: 125 DMRMDKDAPLSAKNVVNEYSNSELENILLEYGELRNYKKIASAIVNSR---PFTSAKELS 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + K +IHPAT QA+RI VN+E+ EL L+S E + + V+SFHS Sbjct: 182 ERTKHLMPHGK--KIHPATLLMQAIRIEVNDELGELKSLLQSIEDSQFTDATVAVISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ + + + + ++ + ++KK + +++ N RSRSAK Sbjct: 240 LEDRIVKQTYTKWTKNCICPDEAMRCTCSRDNSLGRILSKKPITAQDDELKENPRSRSAK 299 Query: 311 LRAG--MR 316 +R R Sbjct: 300 MRVFHYER 307 >gi|57242049|ref|ZP_00369989.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis RM3195] gi|57017241|gb|EAL54022.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis RM3195] Length = 304 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 160/300 (53%), Gaps = 6/300 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL ++V L + LD T G GG+S + KM ++IA D+D A+ +E Sbjct: 4 PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +R++ + L+ + FSQ+ + + K + G++ D+GVSS+ +D +RGFS + + Sbjct: 64 RLREFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSNFLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA DV+N + + L I I GE K + +A I+K R + ++L ++ Sbjct: 124 DKSQSLSAFDVINTYSKEKLANIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILS 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T KN +I A +FQALRI VN E+E L L+ EKA +L ++ FHSLEDR Sbjct: 184 NT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK +F + + I A+ + + ++KK + P +E++ N RS AK+RA Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRAF 301 >gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099] gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099] Length = 338 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 137/285 (48%), Positives = 188/285 (65%), Gaps = 3/285 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+ L PA +I+D TFGAGGY+R+ G++V+A+DRDP A++ G++ Sbjct: 18 HIPVLLGEVLEALAPAERDIIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRDLEV 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L QA FS L ++V DGVV D+GVSSMQ+D +RGFSF+ GPLDMRM+ Sbjct: 78 QSGGRLRLVQAPFSTLDEHVES--ADGVVLDIGVSSMQLDQAERGFSFRFDGPLDMRMAQ 135 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L+ I+ + Sbjct: 136 AGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKKPFEGTLELADAIETHI 195 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + ++IHPATR FQALRI+VN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 196 GRAPKDKIHPATRVFQALRIYVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRIVK 255 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +F A R+ RH+ + A A F+ V +VA N Sbjct: 256 RFIADRADVATGSRHLPEAQARTATFRKAGGG-VTAGDAEVAANP 299 >gi|162449928|ref|YP_001612295.1| methyltransferase [Sorangium cellulosum 'So ce 56'] gi|262826606|sp|A9FI25|RSMH_SORC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161160510|emb|CAN91815.1| methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 315 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 173/303 (57%), Gaps = 22/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 HV VL +V+A L+P V +DAT GAGG++ + + G+ VI +DRD A++ + + Sbjct: 23 HVSVLGREVLAALSPVSEGVYVDATLGAGGHTATILETPGARVIGIDRDERALAIARARL 82 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ + FS+++ ++ VDG++ D+GVSSMQ+D RG SF+ GPLDM Sbjct: 83 ARAGDRVTYVHGEFSEIERHLAALGVPQVDGLLADIGVSSMQLDDPGRGMSFRAEGPLDM 142 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM G +A +++ + + ++L ++ GEE+++ R+A I + S TT DL Sbjct: 143 RMDSSRGETALELIERLSDEELADLIYRYGEERRSRRVARCIKQAADSGELVTTLDLRRA 202 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + V ++ + PATR+FQALRI VN E+++L L +A + + GG+L V+SFHSLE Sbjct: 203 VVRAVGPARIGGVDPATRTFQALRIAVNGELDQLEALLEAAPRIIAPGGVLAVISFHSLE 262 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ P V++ +TKK V ++V N R+RSAKLRA Sbjct: 263 DRIVKRALRE-----------------PEVWEPLTKKPVTAGDDEVEGNPRARSAKLRAA 305 Query: 315 MRT 317 R Sbjct: 306 RRV 308 >gi|256832298|ref|YP_003161025.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603] gi|256685829|gb|ACV08722.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603] Length = 334 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 175/314 (55%), Gaps = 10/314 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVIAL--DRDP 68 H+PVL ++ + L+ PA P + +DAT G GG++R+ + NVIA+ DRD Sbjct: 8 SPASRRHIPVLRDRCLELMAPALNSPQALYVDATLGMGGHTRAVLEAFPNVIAIGIDRDA 67 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A++ E + + ++F T+ + + + G ++ DLGVSS+QID +RGF Sbjct: 68 QALALASERLESFGQRFRAVHTTYDNIYRVIHEAGFDGAQAILMDLGVSSLQIDERERGF 127 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ PLDMRM S ++A+D++N + K L IL GEE+ A RIA AIV+RR+ P Sbjct: 128 AYAHDAPLDMRMDSSAPLTAADILNTYDEKRLATILKTYGEERFAPRIARAIVRRREERP 187 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++ + +L LI++++ + + +PA R+FQALRI VN E++ LA L +A ++L GG Sbjct: 188 WERSGELVDLIRESIPAAARATGGNPAKRTFQALRIEVNEELDVLAHALPAAIESLVIGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S+HSLEDR+ K F I H +++T+ + ++ N Sbjct: 248 RLLVESYHSLEDRMTKVEFTRGLQSSAPPDLPIEPETHRPYLRALTRGAEKADENELQSN 307 Query: 304 RRSRSAKLRAGMRT 317 RS S +LRA R Sbjct: 308 PRSASVRLRAIERV 321 >gi|296273435|ref|YP_003656066.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM 7299] gi|296097609|gb|ADG93559.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM 7299] Length = 300 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 10/300 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL ++ + + I+D T G G+S K S +I D+D A+ ++ Sbjct: 4 PHIPVLYKETLGVFENIDSGYIIDCTLGYAGHSEGLLKQNSNVKLICNDQDNEALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + + + F + + + + G++ D+GVSS+Q+D DRGF F Sbjct: 64 RLEPFLNRATFNKGNFETVLNSFKEYDIRGILADIGVSSLQLDKEDRGFGFDSESLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + AS VVN + +L R+ GE K+ ++A IV R + Sbjct: 124 NQEQSLDASVVVNTYSQSELERVFKECGEVKEYKKVASLIVNNRPFTSAKELSTFI---- 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 ++H AT FQ +RI VN+E+ L + S E+ L+ ++SFHSLEDR Sbjct: 180 --AKNMHKGKLHAATLPFQGIRIEVNDELGVLERLFDSIEELKPKNCLIAIISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK +F S + + A+ + ITKK ++PT E++ N RSRS+KLR Sbjct: 238 IVKNYFKKWSKNCICPSDVMRCTCGNDNALGKIITKKPIIPTNEEIKVNPRSRSSKLRVF 297 >gi|293192321|ref|ZP_06609432.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309] gi|292820236|gb|EFF79230.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309] Length = 335 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 12/317 (3%) Query: 15 HTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVLL + + +L P PG V++D T G GG++ + G VI +DRDP Sbjct: 14 PASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQ 73 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ + + +F T+ + V ++ VDGV+ DLGVSS+Q+D DRG Sbjct: 74 AIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRG 133 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ K PLDMRM SG SA+D++ ++ +L RIL GEEK A RIA I++RR A Sbjct: 134 FAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDA 193 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P T +L +I++ + + +PA R+FQALR+ VN+E+ L + L A +L+ G Sbjct: 194 PITRTGELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVG 253 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+V S+ SLEDR+VK S + + + +TK Q + Sbjct: 254 GRLVVESYQSLEDRIVKDVLRCGSTSAAPPGLPVVPDEMAPSLRLLTKGANKADQAEQDH 313 Query: 303 NRRSRSAKLRAGMRTVE 319 N RS S +LR E Sbjct: 314 NPRSASVRLRGAELIRE 330 >gi|154250452|ref|YP_001411277.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum Rt17-B1] gi|263447049|sp|A7HNY7|RSMH_FERNB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154154388|gb|ABS61620.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum Rt17-B1] Length = 294 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 155/307 (50%), Gaps = 30/307 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75 H+PVLL +V+ L P V +D T G GG++R+ + G VI +D D + + Sbjct: 9 HIPVLLNEVVENLIWKPDGVYVDCTVGEGGHTRAIAERVLPYGGRVIGIDVDSEVLQIAE 68 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y F L + VDG++ DLGVS+ Q+ RGFSF + PL Sbjct: 69 HNLLSYPNVQLFKFSYVELPVLLSLLQVHKVDGLLVDLGVSTYQLKAEGRGFSFNQDEPL 128 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A +VN + L I+ GEE + RIA AI Q+ P QTT+ L Sbjct: 129 DMRMNLENNLTAYHIVNTYPEEKLADIIYNYGEENFSRRIARAI---VQNRPIQTTRQLV 185 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + + N + H AT++FQA+RI VN EIE +++ L A L +GG L ++SF Sbjct: 186 EVIKRALPYKEVHNRKRHFATKTFQAIRIEVNKEIENISKFLEFAPDYLNSGGRLAIISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F + + I + PT +VA N R+RSAK Sbjct: 246 HSLEDRIVKHVFK-----------------NDKRLKPI-GDFISPTTFEVAENPRARSAK 287 Query: 311 LRAGMRT 317 LR R Sbjct: 288 LRLAERV 294 >gi|15643635|ref|NP_228681.1| S-adenosyl-methyltransferase MraW [Thermotoga maritima MSB8] gi|8134815|sp|Q9WZX6|RSMH_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4981407|gb|AAD35954.1|AE001753_10 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 299 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 178/315 (56%), Gaps = 27/315 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H+PV++ +VI L P K+ILD T G GG+SR+ + G +I +D D Sbjct: 1 MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEV 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +E ++++ ++ SLF+ ++ + L + + VDG++ DLGVS+ Q+ +RGF+F Sbjct: 61 LRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTF 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM +A V+N+ ++L RI+ GEEK+ +R K ++ P Sbjct: 121 EREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFAR--RIARKIVENRPLN 178 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT DL +++ + + + H AT++FQA+RI+VN E+E L + L+ AE L GG Sbjct: 179 TTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+SFHSLEDR+VK+ F + + +T+K V P++E++ N Sbjct: 239 IVVISFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENP 281 Query: 305 RSRSAKLRAGMRTVE 319 R+RS +LRA R E Sbjct: 282 RARSGRLRAAERIEE 296 >gi|38234181|ref|NP_939948.1| S-adenosyl-methyltransferase MraW [Corynebacterium diphtheriae NCTC 13129] gi|42559424|sp|P60395|RSMH_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|38200443|emb|CAE50131.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 339 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 172/319 (53%), Gaps = 23/319 (7%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL ++ L+ P VI+D T GAGG+S+ F + VI LDRD +++ Sbjct: 19 HVPVLRARMAELIAPKVTAMGSDAVIIDGTLGAGGHSKYFLESFPEARVIGLDRDTNSLA 78 Query: 73 CGQETMRDYKEQFSLFQATFSQ--------------LQDYVPDKGVDGVVFDLGVSSMQI 118 +E ++++ ++F F + + ++G+ G +FDLGVSSMQ+ Sbjct: 79 SARERLKEFGDRFLGIHTRFDRFAPKLEELAQSGNPIAATALEQGISGALFDLGVSSMQL 138 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF+++ PLDMRM + GI+A+DV+N + +L RIL G+E+ A +IA AIV Sbjct: 139 DQAERGFAYRVDAPLDMRMDNTIGITAADVLNTYSHGELARILKTYGDERFAGKIASAIV 198 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ PF T+ L L+ T+ ++ HPA R+FQALRI VN E+E L L Sbjct: 199 REREKEPFDTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNRELESLENVLPEIT 258 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L GG + +S+ SLED++VK++F S + + F+ +T+ T Sbjct: 259 QRLTTGGRAVFMSYQSLEDKIVKRYFVDISTSKTPPGLPMELPEYAPKFKVVTRGAEKAT 318 Query: 297 QEDVAFNRRSRSAKLRAGM 315 ++ N R+ S ++RA Sbjct: 319 DAEIEENPRAASVRVRAIE 337 >gi|197101179|ref|NP_001126687.1| probable methyltransferase-like protein 15 [Pongo abelii] gi|75054772|sp|Q5R5T5|MET15_PONAB RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|55732357|emb|CAH92881.1| hypothetical protein [Pongo abelii] Length = 407 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 128/340 (37%), Positives = 188/340 (55%), Gaps = 39/340 (11%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVLHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAETLLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNAFDQQALASILRTYGEEKHAKKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P TQ L+S+ +Y K H AT++FQA+RIFVNNE+ EL GL++A Sbjct: 247 PITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAVRIFVNNELNELYMGLKTA 306 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281 +K L+ GG L+ +SFHSLEDR++K+F + K + + Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEV 366 Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R+RSAKLRA ++ Sbjct: 367 SKRRAPLMWELIHKKVLSPQDQDVQDNPRARSAKLRAAIK 406 >gi|269219541|ref|ZP_06163395.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848 str. F0332] gi|269210783|gb|EEZ77123.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848 str. F0332] Length = 335 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 173/314 (55%), Gaps = 11/314 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPVLLE+ + LL PA V++DAT G GG+S +F + +N+ + +DRDP A+ Sbjct: 20 HVPVLLEECVNLLGPALTAEAPVMIDATLGMGGHSFAFLERFANLTVVGIDRDPEAIELA 79 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + + ++F +AT+ + D + D V+ DLGVSS+Q+D RGFS+ Sbjct: 80 GERLARFGKRFVAVRATYDDVSDVAAEYGRAGRADAVLMDLGVSSLQLDDEGRGFSYSGD 139 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM +G +A+DV+ A+ +LTRIL GEE+ ASRIA I+ R + P + T Sbjct: 140 GPLDMRMDKTGGPTAADVLASADKAELTRILREYGEERFASRIAARILAARAAEPIERTG 199 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +++ + + +P R+FQALRI VN+E+ L + + A +A+ GG + V Sbjct: 200 QLADIVRDAIPAPARRTGGNPCKRTFQALRIAVNDELALLRRAIPRAIEAIAVGGRIAVE 259 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLED++VK+ A + + + + +T+ V ++ N RS S Sbjct: 260 SYQSLEDKIVKREMAKGATSSTPAGLPVELDDRAPYLRLLTRGAVKADAAELQANPRSAS 319 Query: 309 AKLRAGMRTVERSI 322 +LRA R E Sbjct: 320 VRLRAAERLRETPH 333 >gi|229490464|ref|ZP_04384305.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121] gi|229322754|gb|EEN88534.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121] Length = 336 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 111/334 (33%), Positives = 174/334 (52%), Gaps = 26/334 (7%) Query: 13 IHHTIGD--------HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK 56 + H + + HVPVLL + LL PA G ++DAT G GG+S F Sbjct: 1 MDHEVNEPSDADGFAHVPVLLHRADDLLGPAITAVGDGGAGAYMIDATLGLGGHSEFFLG 60 Query: 57 MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVV 108 ++I LDRD A+ E + + ++ + T+ ++D + V ++ Sbjct: 61 KYPGLHLIGLDRDTNALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAIL 120 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D DRGF++ PLDMRM + G++A++V+N + DL RIL GEE+ Sbjct: 121 FDLGVSSMQLDEADRGFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEER 180 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226 A +IA I+++R+ PF T+ L L+ +T+ ++ HPA R+FQALRI VN E++ Sbjct: 181 FAGKIASEILRQREREPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELD 240 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L + + AL GG ++ +S+ SLEDR+VK RS + F+ Sbjct: 241 SLRAAVPAGLDALAVGGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFR 300 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +T+ +++++ N RS +LRA R R Sbjct: 301 ILTRGAERASEQEIEENPRSAPVRLRAAERISRR 334 >gi|323452900|gb|EGB08773.1| mraW bacterial methyltransferase-like protein [Aureococcus anophagefferens] Length = 357 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 148/320 (46%), Gaps = 15/320 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 A+ H PV+ + + L +D T G GG+S G ++ +DRD Sbjct: 37 EALPAASAYHTPVMGNECVDWLVTKRDGFYVDGTLGGGGHSSLILAKLGDGGRLVGVDRD 96 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 A+ + + +FS A + + + DGV+ DLGVSS Q+D RG Sbjct: 97 AAAIEAAGDRLAADG-RFSSVHANYDAGVRRAVEAAGRKADGVLLDLGVSSRQLDDAARG 155 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ GP+DMRM G +ASD+VN + +DL +L +E A R+A A+V R Sbjct: 156 FSFRGDGPIDMRMDGRDGTTASDLVNGLDERDLAFLLRANADEPNAGRVARALVAARPLG 215 Query: 184 PFQ-----TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + + + R+FQALR+ VN+E L + L Sbjct: 216 STTALADAVAAAVPRQKRSAPAAHAQAQKKAVARAFQALRVEVNDEFGALERLLLDLPAL 275 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 + GG ++V+++HSLEDR VK+ F + A R A F + +K + P++ Sbjct: 276 VAEGGRVVVLTYHSLEDRRVKRIFRDGRLRGDAPRDDY--GNKLAPFAPLHRKALPPSEG 333 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 +V N R+RSAKLRA RT Sbjct: 334 EVERNPRARSAKLRAAERTD 353 >gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 344 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 139/288 (48%), Positives = 189/288 (65%), Gaps = 3/288 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL +V+ L PA G +I+D TFGAGGY+R+ G++V+A+DRDP A++ G++ Sbjct: 21 SARHIPVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRD 80 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + L QA FS L ++V DG+V D+GVSSMQ+D +RGFSF+ GPLDMR Sbjct: 81 LEVQSGGRLRLVQAPFSTLDEHVES--ADGIVLDIGVSSMQLDQAERGFSFRADGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ SG+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L+ I+ Sbjct: 139 MAQSGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIE 198 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L VV+FHSLEDR Sbjct: 199 THIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLAVVTFHSLEDR 258 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +VK+F A R+ RH+ ++A A F+ V +VA N Sbjct: 259 IVKRFIADRADVATGSRHLPEAHARTATFRKAGGG-VTAGDAEVAANP 305 >gi|311248051|ref|XP_003122950.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Sus scrofa] Length = 405 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 132/351 (37%), Positives = 191/351 (54%), Gaps = 41/351 (11%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--V 61 +S S A+ H+PV++++V+ L P G+ LD TFG+GG++++ + S+ + Sbjct: 57 RSQDRDSEAMTKL---HIPVMVDEVVHCLAPQKGQFFLDMTFGSGGHTKAILQKESDIIL 113 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSM 116 ALDRDP A + ++ Y +Q FSQ + + GV GV+ DLG SSM Sbjct: 114 YALDRDPTAYAIAEQLSEVYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSM 173 Query: 117 QIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRI 172 Q+D +RGFS +K GPLDMRM +A+DVVN + L IL GEEK A +I Sbjct: 174 QLDSPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQHALASILRAYGEEKHAKKI 233 Query: 173 AHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNE 224 A AIV+ R P TQ L+S+ +Y K H AT++FQA RIFVNNE Sbjct: 234 ASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNNE 293 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------ASR 265 + EL GL++A+K L+ GG L+ +SFHSLEDR++K+F S+ Sbjct: 294 LNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQ 353 Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 G + + I + P +++ + KKV+ P +DV N R RSAKLRA ++ Sbjct: 354 LGSSLENKEGISTGKAPLMWKLLHKKVLTPEDQDVQDNPRGRSAKLRAAIK 404 >gi|300088323|ref|YP_003758845.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528056|gb|ADJ26524.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 15/300 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HT DH PV+L + + L PG +D T GAGG++R+ M G ++ LD DP Sbjct: 1 MSHT--DHTPVMLRESLQALAVGPGGRYVDGTTGAGGHARAILDMSAPGGQLLGLDADPE 58 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 ++ E + Y+ F L A FS++++ G++ DLG++SMQ+ RGFS Sbjct: 59 SLKIASENLSGYEGSFRLVNANFSRMEEICRQYDFYPVHGIILDLGLASMQLTETGRGFS 118 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 FQ PLDMR S +A+++VN + ++ IL GEE+++ IA + +S P Sbjct: 119 FQYDAPLDMRFSPDQKLTAAEIVNTWSETEIADILYRYGEERRSRAIA---RRIVESRPL 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT L++L+ KT+ ++ IHPATR+FQALRI VN+E+ L L A + L G L Sbjct: 176 KTTTQLANLVAKTI--GRSGDIHPATRTFQALRIAVNDELARLEDTLDQAVRLLGYSGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+++HSLEDR+VK+FF + + + H A + + +KV+ PT E+V N Sbjct: 234 VVIAYHSLEDRIVKQFFQREATDCVCPVELPECRCGHVARLRVLNRKVMTPTDEEVRANP 293 >gi|330836624|ref|YP_004411265.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta coccoides DSM 17374] gi|329748527|gb|AEC01883.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta coccoides DSM 17374] Length = 314 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 154/303 (50%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75 H PVL E+V+ L +++D T G GG++ + N+ I LDRD + Sbjct: 6 HQPVLAEEVLDALVIPLDVPALMIDCTTGEGGHTGMMLERHPNLTVIGLDRDEAIQKKAR 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y +F F D ++FDLG+S RGFSFQK PLDM Sbjct: 66 TRLESYGGRFIPTLTWFDDFLTTYEGTAPDAILFDLGISMFHYVESGRGFSFQKPEPLDM 125 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R+ IS +D+VN + L I+ GEE+ + +IA AI + R + L+ L Sbjct: 126 RLDAQDAISVADIVNTYEERRLADIIYAYGEERHSRKIAAAICRARAEERLTYSDRLAEL 185 Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ V + RIHPAT++FQALRI VN+E++ + + +A K ++ GG + V++FHSL Sbjct: 186 IKSAVPPAYRFGRIHPATKTFQALRIEVNHELDRIKPAIEAALKIIRPGGRIAVITFHSL 245 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F + R + + F ITKK +VP++++ N +RSAKLR Sbjct: 246 EDRKVKWIFKEAAWDTEETREK-KTASTFPPFAIITKKPIVPSEDECRRNPAARSAKLRV 304 Query: 314 GMR 316 + Sbjct: 305 IEK 307 >gi|227494640|ref|ZP_03924956.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831822|gb|EEH64205.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436] Length = 344 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 182/307 (59%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H PVL+++V+ LL PA V ++DAT G GG++ + VI +DRDP A+ Sbjct: 22 HEPVLIDEVLDLLAPAFTGVEIATMIDATLGMGGHTEAVITAFPNVRVIGIDRDPNAIRL 81 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + E+F AT+ + + + +D V+ DLGVSS+Q+D +RGF++ + Sbjct: 82 ASKRLESFGERFKAVHATYDSVYEVAEENGLAGKIDAVLMDLGVSSLQLDDDERGFAYSR 141 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM GI+A++++ A+ +LTRIL GEEK ASRIA I K+R++ P +T+ Sbjct: 142 NTYLDMRMDPTQGITAAELLATASAAELTRILRTFGEEKFASRIARNIEKQRETKPIETS 201 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +++ ++ + + +PA R+FQALR+ VN E++ LA + +A ++LK GG L+V Sbjct: 202 LELTEIVRASIPAAARRQGGNPAKRTFQALRVAVNEELDILADAVPAALESLKVGGRLVV 261 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+ SLEDR+VK S + + + +++T+K + T+E +A N R+ Sbjct: 262 ESYQSLEDRIVKNVIKDGSEINIPPGLPVIPDHLKPSLENVTRKAIQATEEQIADNPRAA 321 Query: 308 SAKLRAG 314 S +LRA Sbjct: 322 SVRLRAA 328 >gi|206602140|gb|EDZ38622.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum sp. Group II '5-way CG'] Length = 307 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 21/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78 H+PV+ ++V+ +L+ PG+ +DAT G GG++R+ + G +VIA+DRDP A+ + E + Sbjct: 17 HLPVMTKEVLEVLDVQPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E+ L + + +++ V GVV D G S Q G SF GPLDMR Sbjct: 77 PVFGERLRLTCMNHAGMGEFLSSMGVDVSGVVLDSGWSMAQASESGAGLSFDAEGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSL 194 M + +A D++ + ++L I GEE A I+ A+V+ R + +T ++L++ Sbjct: 137 MDPTLQRTAMDILEHQSAEELAEIFSNFGEEPLAMPISRALVQSRSRGRLPRTPKELAAF 196 Query: 195 IQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + Y + +R HPATR F ALRI VN EI+ L +G+ L +G L V++FHS Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILVSGARLAVLTFHS 256 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR +K F + + + K V+P + ++ N RSRSAKLR Sbjct: 257 REDREIKHLFRGWVREGW--------------GRLLQSKPVLPGKAEIEQNPRSRSAKLR 302 Query: 313 A 313 Sbjct: 303 V 303 >gi|313886065|ref|ZP_07819803.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica PR426713P-I] gi|312924595|gb|EFR35366.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica PR426713P-I] Length = 310 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 157/318 (49%), Gaps = 16/318 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS+ + H VL E + LL P + +D T G GG+SR+ + I LD Sbjct: 1 MSAKL-----YHTAVLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATF-SQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDR 123 +DP AV D + F + Q DY VDG++ DLGVSS D +R Sbjct: 56 QDPDAVVNA---PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSEER 112 Query: 124 GFSFQKSG-PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 GFSF+ DMRM+ SG++A D++ + + L IL GE A RIA +V R Sbjct: 113 GFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSHRA 172 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T L ++ + + +R FQALRI VN+E+ L Q L + + LK Sbjct: 173 VGYP-TIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKP 231 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + ++S+HSLEDR+VK+FF + + + PA + +TKK + P+ +++A Sbjct: 232 GGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADEIA 291 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+RSAKLR R Sbjct: 292 DNNRARSAKLRVAERREN 309 >gi|313837465|gb|EFS75179.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA2] gi|314971672|gb|EFT15770.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA3] Length = 337 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP-APGK--VILDATFGAGGYSRSFCKMGS--NVI 62 M++ + HVPV+ +++ LL P V +D T G GG++ + ++ Sbjct: 2 LMATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLV 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ ++ + ++ L A +L + + D VD V+ DLG+SS+QID Sbjct: 62 GIDRDRQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQID 121 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM G +A+ V+N+++ DL RIL GEEK A RI AIV Sbjct: 122 EVNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVT 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + ++ HPA R+FQALRI VN E+E L+ L A Sbjct: 182 ERDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRAL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+++HSLEDR VK+ F I + A F +T+ P Sbjct: 242 DRLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPD 301 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++++ N RS SA+LR R Sbjct: 302 ADEMSANPRSASARLRVIERV 322 >gi|224372899|ref|YP_002607271.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH] gi|262825192|sp|B9L9G3|RSMH_NAUPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223589436|gb|ACM93172.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH] Length = 306 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 13/306 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 + H+PVLL + I L N P +D T G GG+S + + +I +D+D Sbjct: 1 MRIEDIPHIPVLLNETIGLYNDMPENGYFIDCTLGFGGHSEAILEKYPNIKLIGIDQDAE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ + + + ++ S L++ D V G++ D+GVSS Q+D +RGF+F+ Sbjct: 61 AMHFAKNRLARFGDRVQFINKRASSALEELPEDLPVSGILADIGVSSYQLDNKERGFTFE 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 SA DVVN + +DL RI+ GE ++ ++ AI+ +R + Sbjct: 121 SEELDMRMDKTQDFSAKDVVNFYSKEDLERIIKNYGECRRFKKVVSAIISKRPIKSNREL 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D+ + + FQA+RI VNNE+ EL + L++A+K K G +L ++ Sbjct: 181 ADI-------LGHIGLRDKKDLAKIFQAIRIEVNNELNELEKILKNAKKLAKNGTILGII 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F S K + I + + + +TKK +V ++E++ N RS Sbjct: 234 TFHSLEDRIVKNTFKEWSKKCICPPEAIRCECGGNNQLGKILTKKPLVASKEEIKMNPRS 293 Query: 307 RSAKLR 312 RSAKLR Sbjct: 294 RSAKLR 299 >gi|23335461|ref|ZP_00120697.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Bifidobacterium longum DJO10A] gi|23465877|ref|NP_696480.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum NCC2705] gi|189439036|ref|YP_001954117.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum DJO10A] gi|227547548|ref|ZP_03977597.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621159|ref|ZP_04664190.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132476|ref|YP_003999815.1| s-adenosylmethionine-dependent membrane protein [Bifidobacterium longum subsp. longum BBMN68] gi|322689514|ref|YP_004209248.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322691469|ref|YP_004221039.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|42558985|sp|Q8G4R0|RSMH_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445917|sp|B3DQM3|RSMH_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23326579|gb|AAN25116.1| widely conserved hypothetical protein in upf0117 [Bifidobacterium longum NCC2705] gi|189427471|gb|ACD97619.1| Putative S-adenosylmethionine-dependent membrane protein [Bifidobacterium longum DJO10A] gi|227211958|gb|EEI79854.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515620|gb|EEQ55487.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773403|gb|ADQ02891.1| Putative S-adenosylmethionine-dependent Membrane protein [Bifidobacterium longum subsp. longum BBMN68] gi|320456325|dbj|BAJ66947.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460850|dbj|BAJ71470.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 359 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 160/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H+PVLL+ + L+ PA + +D T G G+S +F K +I +DRD Sbjct: 1 MVDVANIHLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122 A+ E M ++F A F QL + D+ ++ V DLG+SS+QID D Sbjct: 61 SEALGLATERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A ++ + +L RI GEE+ + +IA AIV RR Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT L+ L+ + V + +PA R FQALRI VN E+++LA L A L Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F A + + F +T+ + + ++A Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 ANPRSASVRLRAVE 314 >gi|289640760|ref|ZP_06472931.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca glomerata] gi|289509336|gb|EFD30264.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca glomerata] Length = 359 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 184/314 (58%), Gaps = 10/314 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H PVL ++V+ALL P P V++DAT G G++ + +I LDRDP A+ Sbjct: 21 ATHTPVLSDRVVALLAPALLRPEAVLVDATVGLAGHASALLDACPTARLIGLDRDPQALE 80 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + D ++ +L A + QL + V GV+FDLGVSS+Q+D +RGFS+ + Sbjct: 81 HSRARLADRADRATLVHAVYDQLPTVLDALGLTEVHGVLFDLGVSSLQLDSDERGFSYSR 140 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G +A+DVVN + +LTRIL GEE+ A RIA A+V R PF ++ Sbjct: 141 DAPLDMRMDPGRGRTAADVVNTYDADELTRILRHYGEERFARRIASAVVAERAREPFVSS 200 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ L+++T+ ++ N +PA R+FQALRI VN E+E LA+ L +A AL GG L+V Sbjct: 201 ARLADLVRRTIPAATRRNGGNPAKRTFQALRIEVNGELEALARALPAALDALAVGGRLVV 260 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDR+VK+ FA+R + + + +T+ P+ ++VA N R+ Sbjct: 261 LAYHSLEDRMVKRAFAARVRPDVPPDLPVIPPDAAPTMRWLTRGGETPSADEVAANPRAS 320 Query: 308 SAKLRAGMRTVERS 321 +AKLRA R S Sbjct: 321 AAKLRAVERIAPPS 334 >gi|255325352|ref|ZP_05366458.1| S-adenosyl-methyltransferase MraW [Corynebacterium tuberculostearicum SK141] gi|255297917|gb|EET77228.1| S-adenosyl-methyltransferase MraW [Corynebacterium tuberculostearicum SK141] Length = 346 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 166/319 (52%), Gaps = 20/319 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ E++ LL P V++DAT GAGG++R F + VI +DRD A+ Sbjct: 16 HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPKARVIGVDRDKQALR 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSMQIDCG 121 E + Y ++F A F +L + + D +FDLGVSSMQ+D Sbjct: 76 NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARTVGIAGALFDLGVSSMQLDQA 135 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM GI+A+DV+N DL R+L G+E+ A +IA A++K R Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYTHGDLARVLKTYGDERFAGKIASAVLKER 195 Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF+ + L L+ + ++ HPA R+FQALR+ VN E+E + L +AL Sbjct: 196 DKEPFENSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ SLEDR+VK F + + F+ +T+ ++E+ Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFKIVTRGAEKASEEE 315 Query: 300 VAFNRRSRSAKLRAGMRTV 318 V N R+ S ++RA R Sbjct: 316 VTENSRAASVRVRAIERLE 334 >gi|301770125|ref|XP_002920478.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Ailuropoda melanoleuca] gi|281337489|gb|EFB13073.1| hypothetical protein PANDA_009216 [Ailuropoda melanoleuca] Length = 407 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 132/335 (39%), Positives = 186/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G++ LD TFG+GG++R+ + S+ + ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV GV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 251 Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S+ V+ K H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F AS+ G + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQASQLGSGHENKEGGSIGRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P DV N R+RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLTPEDRDVQDNPRARSAKLRAAIK 406 >gi|115372771|ref|ZP_01460077.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] gi|115370252|gb|EAU69181.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 105/280 (37%), Positives = 154/280 (55%), Gaps = 6/280 (2%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 ILD T G GG++ + G+ VI +DRDP A++ + + F F +L Sbjct: 2 ILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLGGHA-HFQARAGNFGELPRVA 60 Query: 100 PDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTR 158 D VDGV+ DLGVSS Q+D +RGFSF GPLDMRM G +A++++ Q + ++L R Sbjct: 61 ADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMGPEGRTAAELIAQEDERELAR 120 Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALR 218 I+ LGEE + IA + + P +T + ++ + + RIH AT++FQALR Sbjct: 121 IIYELGEESFSRPIARELKRAL---PTRTLEAAEAVKRAVPRKAWPKRIHVATKTFQALR 177 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-P 277 + VN E+E L L + + LK GG V++FHSLEDR VK+ F + G + Sbjct: 178 MAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKVKEAFRNLVGACRCPPGLPVC 237 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + P F +TKK V ++++V N RSRSA LRA + Sbjct: 238 ACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEKI 277 >gi|189347978|ref|YP_001944507.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245] gi|263445795|sp|B3EIL6|RSMH_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189342125|gb|ACD91528.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245] Length = 322 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 158/319 (49%), Gaps = 19/319 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69 H PVL +V+ LL P V +D T G GG+S + + +I +D+D Sbjct: 5 SYHEPVLAAEVLQLLVRMP-GVYVDGTLGGGGHSLAILEELERKGFLADSFLIGIDQDDH 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDY--------VPDKGVDGVVFDLGVSSMQIDCG 121 A+ E + + ++ + FS + V G++ DLGVSS QID Sbjct: 64 ALKAASEKLSGFSGSTAIIKGNFSAIAAIVRKISAERHFTDSVAGILLDLGVSSAQIDTP 123 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ +SGPLDMRM SA+D+VN + ++L + GEE ++ IA I+ R Sbjct: 124 ERGFSYMRSGPLDMRMDPEAESSAADLVNTLSERELVTLFFRYGEEPRSRSIARGIIDYR 183 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + + + I + + I +R FQALR+ VN E+E L Q L L Sbjct: 184 EKHGSILRTEELAEIIRLREARPDRVIKTLSRVFQALRVEVNRELEVLEQVLADGASLLS 243 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299 A G L V+S+HSLEDR+VK FF ++S R + + A F +T+K V Q++ Sbjct: 244 AQGRLAVISYHSLEDRMVKSFFTAQSSSDWGPRGVGLTEPLKKAEFAVVTRKPVASGQQE 303 Query: 300 VAFNRRSRSAKLRAGMRTV 318 ++ N RSRSAKLR + Sbjct: 304 LSLNPRSRSAKLRVLEKLA 322 >gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199] gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199] Length = 326 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 120/295 (40%), Positives = 166/295 (56%), Gaps = 10/295 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAV 71 + H+PV+LE V+ L P G +D TFG GGY+R+ V A+DRDP A+ Sbjct: 1 MTADPALHIPVMLEPVVEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +++ + + F + V + VDG+ DLGVSS QID +RGFSF+ Sbjct: 61 RRAGILAQEFGGRLIAIEGRFGAMDQLVANAGAAQVDGIALDLGVSSPQIDDAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +G SA+DVVN A +L I+ LGEE+ A R+A A+V R + P T Sbjct: 121 FDGPLDMRMEKAGPSAADVVNGATEAELADIVFYLGEERYARRVARALVAARLNGPITRT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++++++ V SK+ I ATR+FQALRI VN E++EL GL +AE+ L GG L VV Sbjct: 181 GELAAIVRRVVPSSKSGGIDSATRTFQALRIHVNRELDELDHGLEAAERLLSPGGRLAVV 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI------PSNAHPAVFQSITKKVVVPTQ 297 SFHSLEDR VK F RSG+ P + F+ IT + + P+ Sbjct: 241 SFHSLEDRRVKTFLRRRSGRTSGPSRHAMAAIAGPVDGPRPTFEVITGRPIAPSD 295 >gi|296122349|ref|YP_003630127.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] gi|296014689|gb|ADG67928.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] Length = 298 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 119/317 (37%), Positives = 172/317 (54%), Gaps = 34/317 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PV+L +VI L PG V+ D T GAGG+SR K + ++A DRDP +S + Sbjct: 1 MHLPVMLREVIQQLQLEPGLVVADGTLGAGGHSREILKAIGSAGMLLAFDRDPMMISLAE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGFSF 127 +T+ E + Q ++ ++D + VD ++ DLG SS Q+ +RGFSF Sbjct: 61 KTV--CGENVHIHQGSYIDIRDVLQRHTQATGRPPLVDRLLLDLGYSSDQLADRERGFSF 118 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q GPLD+R S +SA+ + AN ++ R+L GEE A R+ AI + Q Sbjct: 119 QTEGPLDLRFSTSENVSAAHWLATANDSEIVRVLTEFGEEPFADRLGPAIGLAARRGELQ 178 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGG 243 TT+DL ++++TV + +N HPATR FQALRI VN+E+ ++ L + L GG Sbjct: 179 TTKDLVRVVEQTVPPAILRNAEKHPATRVFQALRIQVNDELTHVSTMLNQIAPEVLAPGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++ V++FHSLEDRLVK+ F V+Q +T K +VPT ++ FN Sbjct: 239 IMAVITFHSLEDRLVKQAFR-----------------QKNVWQELTDKPLVPTPAEIRFN 281 Query: 304 RRSRSAKLRAGMRTVER 320 RSRSAKLR R E Sbjct: 282 PRSRSAKLRIARRIAEN 298 >gi|75675236|ref|YP_317657.1| methyltransferase [Nitrobacter winogradskyi Nb-255] gi|88909206|sp|Q3STT6|RSMH_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|74420106|gb|ABA04305.1| methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 332 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 133/296 (44%), Positives = 178/296 (60%), Gaps = 5/296 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + HVPVL + +A+L P G V +DATFGAGGYSR+ + VI +DRDP A+ Sbjct: 1 MTAPPIRHVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILATAETRVIGIDRDPTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + + L + FS L VDGVV D+GVSSMQ+D RGFSF+ Sbjct: 61 AGGSGLVEESGGRLILVEDRFSHLAAVCAAQDAAAVDGVVMDVGVSSMQLDEAGRGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRMS G +A++VV +A+ DL I+ I GEE+++ +A AIV R+ P TT Sbjct: 121 LDGPLDMRMSGHGPTAAEVVARASETDLADIIYIFGEERRSRAVARAIVGARRHGPIATT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V +K + IHPATR+FQALRIFVN E++EL L +AE+ LK GG L VV Sbjct: 181 RALADIVSKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 SFHSLEDR+VK F A R RH P F +TK+ + P ++V N Sbjct: 240 SFHSLEDRIVKNFLAWRGKTGGGSRHRPEIERAPPSFAILTKRPLTPGDDEVQANP 295 >gi|282854266|ref|ZP_06263603.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139] gi|282583719|gb|EFB89099.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139] Length = 346 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VI 62 M++ + HVPV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 11 LMATDAIGSDAVHVPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELV 70 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQID 119 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 71 GIDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQID 130 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ PLDMRM S G +A+ ++N+++ DL R+L GEEK A RI AIV Sbjct: 131 EVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVT 190 Query: 179 RRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 191 ERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRAL 250 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 251 NRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPD 310 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++VA N RS SA+LR R Sbjct: 311 ADEVATNPRSASARLRVIGRV 331 >gi|213965216|ref|ZP_03393413.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46] gi|213952068|gb|EEB63453.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46] Length = 346 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 161/329 (48%), Gaps = 29/329 (8%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 HVPVLL +V LL P V++D T GAGG++ + + + LDRD A+ Sbjct: 17 HVPVLLHRVTDLLRPGIEALGDDAVVVDGTLGAGGHTEYLLEQFPKLCVVGLDRDDNALR 76 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV--------------------VFDLG 112 +E + + +F F+ F L + + + +FDLG Sbjct: 77 GAEERLARFGNRFVAFRVRFDSLAEVLSGEIPAAAGGSGAENILARAAGKGIAGALFDLG 136 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQ+D +RGF+++ PLDMRM GI+A+DV+N + D+ RIL G+E+ A + Sbjct: 137 VSSMQLDQVNRGFAYRVDAPLDMRMDASQGITAADVLNTYSHGDIARILSTYGDERFAGK 196 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AI++ R+ PF + L L+ +T+ S+ HPA R+FQALRI VN E+E L Sbjct: 197 IASAILREREKEPFTNSGRLVELLYETIPAASRRKGGHPAKRTFQALRIEVNRELEALEN 256 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L AL G + +S+ SLEDR+VKK F R + H F IT+ Sbjct: 257 VLPQVCDALAVDGRAVFMSYQSLEDRIVKKDFVERVKSTTPPGLPMELPGHEPHFALITR 316 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 + ++ N R+ ++R R Sbjct: 317 GAEKASASEIEDNPRAAPVRVRCIERIRA 345 >gi|263447803|sp|Q2NIH4|RSMH_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 303 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 13/309 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 ++ H+ VL ++ I L P + +DAT G G++ + + + D+D A Sbjct: 1 MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDY--VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ++T+ + + + F +DG++FDLG+SS QID RGFS+ Sbjct: 61 CTNAKKTLSPHLP-IEIIHSIFRIXSPISTTKSFSLDGILFDLGLSSCQIDNPQRGFSYL 119 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM+ + I+A ++N + L I + GE K AS + I + P QT Sbjct: 120 HNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNASLVVSEI---IKQRPLQT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + DL S+ + F + H A + FQALRI VN E+E L Q L + LK ++V Sbjct: 177 SYDLVSITDR---FCNLQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNARIVV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR++K FF S V+ + + + ITKK +P++E++ N RS Sbjct: 234 ISFHSLEDRIIKHFFKKHSTFVL-PKKLPIAIIPQTPLSIITKKAFLPSEEEMQNNSRSI 292 Query: 308 SAKLRAGMR 316 SAKLR ++ Sbjct: 293 SAKLRVAVK 301 >gi|332299370|ref|YP_004441291.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas asaccharolytica DSM 20707] gi|332176433|gb|AEE12123.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas asaccharolytica DSM 20707] Length = 338 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 153/308 (49%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VL E + LL P + +D T G GG+SR+ + I LD+DP AV Sbjct: 34 YHTAVLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLDQDPDAVVNA- 92 Query: 76 ETMRDYKEQFSLFQATF-SQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG-P 132 D + F + Q DY VDG++ DLGVSS D +RGFSF+ Sbjct: 93 --PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSEERGFSFRYEEAM 150 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM+ SG++A D++ + + L IL GE A RIA +V R T L Sbjct: 151 PDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSHRAVGYP-TIAAL 209 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + +R FQALRI VN+E+ L Q L + + LK GG + ++S+H Sbjct: 210 MEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKPGGRIAIISYH 269 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+FF + + + PA + +TKK + P+ +++A N R+RSAKL Sbjct: 270 SLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADEIADNNRARSAKL 329 Query: 312 RAGMRTVE 319 R R Sbjct: 330 RVAERREN 337 >gi|88811846|ref|ZP_01127099.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231] gi|88790730|gb|EAR21844.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231] Length = 303 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 147/301 (48%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 LLE I L V +D TFG GG++ + K G + +D+DP A+S Q+ Sbjct: 2 LLEAAIDALRIQANGVYVDGTFGCGGHAAAILKRLATGGRLGLIDKDPSAISRAQQKFAA 61 Query: 81 YKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 F ++++L +DGV+ DLG SS Q+D RGFSF + GPLDMR Sbjct: 62 DARCFIH-HGSYAELGVLADTCGVRGRIDGVLLDLGASSPQLDEARRGFSFLRDGPLDMR 120 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G+SA+ + + ++ ++ GEE+ A RIA AI RQ+ T + + Sbjct: 121 MDPSKGVSAAAWLADTPLSEIESVIRRYGEERYARRIAQAIDASRQAGRLPQTTGALAAL 180 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + HPATRSFQA+RI +N+E+EEL L L GG L+V+SFHSLED Sbjct: 181 IAAAVPRREVGKHPATRSFQAIRIAINDELEELRCFLAGICDLLCPGGRLVVISFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK+F S + K V P E++ N R+RSA LR Sbjct: 241 RLVKRFMRDHSRIGDLPPGIPIVAHSMRPRLRRPAKPVRPGAEEIRVNPRARSAVLRVTE 300 Query: 316 R 316 R Sbjct: 301 R 301 >gi|145220562|ref|YP_001131271.1| S-adenosyl-methyltransferase MraW [Prosthecochloris vibrioformis DSM 265] gi|262824996|sp|A4SH10|RSMH_PROVI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145206726|gb|ABP37769.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeovibrioides DSM 265] Length = 327 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 107/321 (33%), Positives = 162/321 (50%), Gaps = 19/321 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KM-----GSNVIALDRDPFA 70 H PVL + +++L P + LD T G GG+S + + GS ++ +D+D A Sbjct: 8 YHEPVLAPESVSMLVRGP-GLYLDGTLGGGGHSLAILCELERSGWLEGSLLLGIDQDDEA 66 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYV--------PDKGVDGVVFDLGVSSMQIDCGD 122 + E + DY+E + F + + G++ DLGVSS Q+D Sbjct: 67 LQEAGERLADYREHAVALKGNFGNIAALSAREAGSRGMEPQASGILLDLGVSSHQLDVPL 126 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ + GPLDMRM +A+D++N A +L I GEE + IA A+ RR Sbjct: 127 RGFSYMQPGPLDMRMDSGATGTAADILNTAPEAELASIFFRYGEEPLSRVIARAVTTRRV 186 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T D + + ++V F + + +R FQALRI VN E+E L + L LK Sbjct: 187 EKGPFHTTDELADLVRSVVFGRERVMKSLSRVFQALRIAVNQELEVLERVLGDGVMLLKP 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+S+HSLEDR+VK+FF+S + + + + PA ++T K V E+V Sbjct: 247 GGRMAVISYHSLEDRMVKRFFSSLTTADWGPKGVGLREPVRPAAAIAVTGKPVRAGAEEV 306 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 A N R+RSAK+R + R Sbjct: 307 ARNPRARSAKMRVIEKMENRE 327 >gi|224436850|ref|ZP_03657839.1| S-adenosyl-methyltransferase MraW [Helicobacter cinaedi CCUG 18818] gi|313143328|ref|ZP_07805521.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter cinaedi CCUG 18818] gi|313128359|gb|EFR45976.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter cinaedi CCUG 18818] Length = 311 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H VL +V+ LN G V +D T G GG++ S + ++ A DRD A+S ++ Sbjct: 2 KHFSVLKNEVLEALNLESGAV-IDCTLGYGGHTLSLLEQNPNIHIYAFDRDESALSLAKQ 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + + F+ D + ++ V G++ D+GVSSMQ+D RGFSF + Sbjct: 61 RLAPYASRLHIQHCAFANALDSLGNEQLARVRGILADIGVSSMQLDDKHRGFSFTSNNLD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 S ++A+ V+N + L I I GE +Q+ ++ IV R+ PF++ +LS Sbjct: 121 MRMDSTQNLNAAKVINTYSAMRLEEIFRIYGEIRQSKKLTELIVSTREKKPFESALELSE 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS----AEKALKAGGLLIVVS 249 LI++ +F + IHPAT +FQALRI VN E+E+L L+S + + ++S Sbjct: 181 LIER--HFPRIGGIHPATLAFQALRIEVNGELEQLQTLLQSIESAFINGVLYDCKVAIIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR++K+ F + + + A+ +TKK ++P++ ++ N+RSR Sbjct: 239 FHSLEDRIIKQTFKQWAKSCKCGENALKCECGNNNALGSILTKKPILPSETEIIQNKRSR 298 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 299 SAKLRIFQ 306 >gi|313661472|ref|NP_001186351.1| putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Gallus gallus] Length = 409 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 136/354 (38%), Positives = 186/354 (52%), Gaps = 39/354 (11%) Query: 2 ESKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 +S++ K S + G HVPV++E+V++ L+P G+ LD TFGAGG+S + + SN Sbjct: 55 KSETKKLPDSTENKNFGRLHVPVMMEEVVSCLSPQSGQCFLDMTFGAGGHSTALLEKASN 114 Query: 61 --VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGV 113 + ALDRDP A Q+ Y +Q FSQ + + +DGV+ D G Sbjct: 115 ITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGC 174 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQA 169 SSMQ D +RGFS QK GPLDMRM +A+DVVN + + L IL GEEK A Sbjct: 175 SSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHA 234 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFV 221 +IA AIV+ R P TQ L+S++ S H AT++FQ LRIFV Sbjct: 235 KKIASAIVQARSIYPITRTQQLASIVAGAFPASALYARKDLLQRPTHIATKTFQGLRIFV 294 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-----------------AS 264 N+E+ EL GL++AEK LK GG L+ +SFHSLEDR++K+F Sbjct: 295 NDELHELFIGLKTAEKFLKPGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSKQKIRQ 354 Query: 265 RSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 H P + + I KKV+ P +D+ N R+RSAKLRA ++ Sbjct: 355 ALKNCSKEEDTHEFPHGKSNSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 408 >gi|157737563|ref|YP_001490246.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri RM4018] gi|172045652|sp|A8EUF3|RSMH_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157699417|gb|ABV67577.1| S-adenosyl-methyltransferase [Arcobacter butzleri RM4018] Length = 300 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 145/300 (48%), Gaps = 10/300 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL +V+ I+D T G G+S +I D+D A++ ++ Sbjct: 4 PHIPVLYNEVLETFKDINEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ + F + + D + GV+ D+GVSS+Q+D +RGF F+ Sbjct: 64 RLEKFENGVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFESLTLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + A+ VVN + +L RI GE ++ ++A IV R + D S Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNRPFNSSKELADFLSKKM 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 ++HPAT FQA+RI VN+E+ L + S EKA ++ ++SFHSLEDR Sbjct: 184 S------KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK +F S + ++ + A+ + ITKK ++PT ++ N RSRS+KLR Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRVF 297 >gi|225872742|ref|YP_002754199.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC 51196] gi|263433378|sp|C1F466|RSMH_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225792322|gb|ACO32412.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC 51196] Length = 297 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 160/308 (51%), Gaps = 28/308 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HVPVLL+ I LN G DAT G G+S + G +IA DRDP A+ + Sbjct: 6 HVPVLLQDAIRYLNVRRGGTYADATLGLAGHSSAIARLLGPGGTLIAFDRDPEAMELAKS 65 Query: 77 TMRDYK-------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + L FS+ +D + +DG++ D GVSS+Q D RGFSFQ Sbjct: 66 RLDALRAELGSEMPKVILHSTEFSEAEDLIEPGSLDGLLADFGVSSLQFDEAHRGFSFQA 125 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G++A+ VVNQ K+L ++ G + R ++ P TT Sbjct: 126 DGPLDMRMNPRVGLTAAQVVNQFGEKELADLIYEFG---EERRSRRIARAIVRARPVSTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ K+ RIHPATR+FQALRI+VN E+ ++ L+ A K L+ GG L+V+ Sbjct: 183 AQLARVVSAAAPAMKSERIHPATRTFQALRIYVNQELGQIEALLKVAPKLLRKGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+ K +++ +T+K + +E+ N R+RS Sbjct: 243 SFHSLEDRIAKDALRE--------------GGQQGIYEVLTRKPLTAGEEETDRNPRARS 288 Query: 309 AKLRAGMR 316 AKLRA + Sbjct: 289 AKLRAAEK 296 >gi|319786245|ref|YP_004145720.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis 11-1] gi|317464757|gb|ADV26489.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis 11-1] Length = 329 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 7/306 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 T H+PVL +V+ L P LD TFG GG++R + G ++ +D+DP A+ Sbjct: 18 STPAAHLPVLFAEVLDGLRVVPEGRYLDGTFGRGGHARGVLERLGPGGRLLLMDKDPEAI 77 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + S+ + +F+ + + + +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 78 AVAEAGF-GSDPRVSIRRGSFTGMAHWDEARDLDGILLDLGVSSPQLDVAERGFSFGKDG 136 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + +A+ +++ +L I GEEKQ+ RIA AIV R P T Sbjct: 137 PLDMRMDPDSGESAAQWLARADEREIADVLWIYGEEKQSRRIARAIVAARAQEPLTRTAQ 196 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++LI V K+ R +PATRSFQA+RI +N E+ +L GL +A AL+ GG L V+SF Sbjct: 197 LANLIGSVVPRGKD-RSNPATRSFQAIRIHINRELADLEAGLDAALAALRPGGRLAVISF 255 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S A R + ++ V ++ + +E++ N R+RSA Sbjct: 256 HSLEDRMVKQFIARHSKAPPANRRLPEASVFVPVLAAL-GGAIRAGEEELQVNVRARSAV 314 Query: 311 LRAGMR 316 LR + Sbjct: 315 LRVAEK 320 >gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum] Length = 307 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 21/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78 H+PV+ ++V+ +LN PG+ +DAT G GG++R+ + G +VIA+DRDP A+ + E + Sbjct: 17 HLPVMTKEVLEVLNVHPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDG--VVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E+ L + + +++P VD VV D G S Q G SF GPLDMR Sbjct: 77 PIFGERLRLTCMNHAGMGEFLPSMRVDISGVVLDSGWSMAQASENGAGLSFDAEGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQDLSSL 194 M + +A D++ Q + ++L I GEE A I+ A + R + +T ++L++ Sbjct: 137 MDPTLERTAMDILEQQSAEELAAIFSNFGEEPLALPISRALVQSRSRGRLPRTPKELAAF 196 Query: 195 IQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + Y + +R HPATR F ALRI VN EI+ L +G+ L +G L V++FHS Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFHS 256 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR +K F + + + K V+P + ++ N RSRSAKLR Sbjct: 257 REDREIKHLFREWVREGW--------------GRLLQSKPVLPGKAEIEHNPRSRSAKLR 302 Query: 313 A 313 Sbjct: 303 V 303 >gi|145588347|ref|YP_001154944.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|262824872|sp|A4SV66|RSMH_POLSQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145046753|gb|ABP33380.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 316 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALL---------NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 H PVLL + + L N A V++D TFG GG++++ K + VI+ D+ Sbjct: 4 THRPVLLAEAVTALISGPLIQEKNAAKKIVVIDGTFGRGGHTQALLKSLEMSARVISFDK 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A+S Q+ +F++ +F+ + Y + VDG++ DLG+SS Q+D RGFS Sbjct: 64 DLDAISVAQQI---QDPRFTIVHDSFAHMDQYAQAESVDGILLDLGISSPQVDEAHRGFS 120 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F++ GPLDMRM+ G++A++ + QA +++TR++ GEE+ A +IA AIV +R+ Sbjct: 121 FRREGPLDMRMNTDQGLTAAEWLEQAPQEEITRVIKTYGEERFAFQIAKAIVAKREEGLS 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + + +V ++ PATR+FQALRIF+N E+E+L GL++A K LK G L Sbjct: 181 PKTTTELASLVASVVRTREAGQDPATRTFQALRIFINRELEDLELGLKAALKLLKPGARL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+FF + + + + + + + I + V P+ +++ N Sbjct: 241 AVISFHSLEDRIVKQFFQAHAKVEIPRGLPVREKDLPQSALEIIGR--VKPSDLEISENP 298 Query: 305 RSRSAKLRAGMR 316 R+RSA +R + Sbjct: 299 RARSAIMRVAEK 310 >gi|308189974|ref|YP_003922905.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER] gi|319777256|ref|YP_004136907.1| s-adenosyl-methyltransferase mraw [Mycoplasma fermentans M64] gi|307624716|gb|ADN69021.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER] gi|318038331|gb|ADV34530.1| S-adenosyl-methyltransferase MraW [Mycoplasma fermentans M64] Length = 301 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 157/308 (50%), Gaps = 16/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL++ I LN P + +D T G GG+S K +IA D+D FA+ Sbjct: 1 MENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAFDKDTFAIEE 60 Query: 74 GQETMRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + K F L + F ++ D + VDG++ DLG+SS Q+D +RGFS+ K Sbjct: 61 SRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDNDERGFSYNK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S A VVN + L ++L E K A ++A AI+ +R P TT Sbjct: 121 NARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISKR---PITTT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +++ +P FQA+RI VNNE + L Q L+ A + LK L V+ Sbjct: 178 LELAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELLKPNTSLAVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLED +VK FF S + + I V KV +PT ++ N+RSRS Sbjct: 238 TFHSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNNELELNKRSRS 291 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 292 AKLRVLKK 299 >gi|213691742|ref|YP_002322328.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. infantis ATCC 15697] gi|263445910|sp|B7GQ70|RSMH_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|213523203|gb|ACJ51950.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457836|dbj|BAJ68457.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 359 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 159/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H+PVLL+ + L+ PA V +D T G G+S +F K +I +DRD Sbjct: 1 MVDVANIHLPVLLDDCVNLMAPALEHENAVAVDCTLGLAGHSIAFLKTAPQARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A+ E M ++F A F QL + D+ VD V DLG+SS+QID D Sbjct: 61 SEALGLAAERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A ++ + +L RI GEE+ + +IA AIV R Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRD 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT L+ L+ + V + +PA R FQALRI VN E+++LA L A L Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F A + + F +T+ + + ++A Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 ANPRSASVRLRAVE 314 >gi|317483063|ref|ZP_07942064.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA] gi|291516661|emb|CBK70277.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum F8] gi|316915469|gb|EFV36890.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA] Length = 359 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 160/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H+PVLL+ + L+ PA + +D T G G+S +F K +I +DRD Sbjct: 1 MVDVANIHLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122 A+ E M ++F A F QL + D+ ++ V DLG+SS+QID D Sbjct: 61 SEALGLATERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A ++ + +L RI GEE+ + +IA AIV RR Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT L+ L+ + V + +PA R FQALRI VN E+++LA L A L Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F A + + F +T+ V + ++A Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAVKADEHEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 ANPRSASVRLRAVE 314 >gi|194323503|ref|ZP_03057280.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. novicida FTE] gi|208778997|ref|ZP_03246343.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG] gi|194322358|gb|EDX19839.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. novicida FTE] gi|208744797|gb|EDZ91095.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG] Length = 299 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 166/301 (55%), Gaps = 14/301 (4%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKE 83 ++ I LN P + +DATFG GG+S++ +IA D+D A+S +E + Sbjct: 2 QESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQFSN- 60 Query: 84 QFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138 F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GPLDMRM Sbjct: 61 -FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMDV 119 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 GI+AS + + +V DL+ I + GEE+ A +IA I Q +T + + + Sbjct: 120 SKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLELAELIRA 179 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFHSLEDR+V Sbjct: 180 T-IGKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFHSLEDRIV 238 Query: 259 KKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K+ F++ + M+P ++ + ITKK ++++ N RSRSA LR Sbjct: 239 KQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRVVE 297 Query: 316 R 316 + Sbjct: 298 K 298 >gi|148259076|ref|YP_001233203.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5] gi|263433381|sp|A5FUK2|RSMH_ACICJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146400757|gb|ABQ29284.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5] Length = 313 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 136/308 (44%), Positives = 184/308 (59%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL E+ +A+L P V LD TFG GGYS S + V A+DRDP A++ G Sbjct: 7 HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ L + F L + D+GV + VFD GVSS Q+D RGFSF+ GPLDM Sbjct: 67 ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN +L IL GEE+ + RIA AIV+RR + PF+TT DL+++I Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + + I PATRSFQALRI VN E+ E+ + L +A L GG L+ VSFHSLED Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F + +G V A PS A F+++T+ VV P + + N R+RSA+L Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETVANPRARSARL 305 Query: 312 RAGMRTVE 319 R R Sbjct: 306 RGIERLAA 313 >gi|146281460|ref|YP_001171613.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501] gi|145569665|gb|ABP78771.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501] Length = 293 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 107/293 (36%), Positives = 160/293 (54%), Gaps = 12/293 (4%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 LD TFG GG+SR + ++ D+DP A++ GQ + +F + Q + Sbjct: 2 RADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA-LAAEDGRFVVVQRS 60 Query: 92 FSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASD 146 F++L D V V G++ DLGVSS Q+D RGFSF GPLDMRM G+SA++ Sbjct: 61 FAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGPLDMRMDPSRGVSAAE 120 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL+ ++ + + Sbjct: 121 WIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADLAKVLTDANPAWEKGK 180 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 PATR+FQ LRI +NNE+ +L +GL +A AL+ GG L+V+SFHSLEDR+VK+F + Sbjct: 181 -SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFHSLEDRIVKQFMRRHA 239 Query: 267 GK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R + + K ++ +V N RSRSA +R + Sbjct: 240 KGEADKLPRDLPIIPKAFEPRLKLIGKPQYASEAEVKANPRSRSAVMRVAEKV 292 >gi|258546144|ref|ZP_05706378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Cardiobacterium hominis ATCC 15826] gi|258518569|gb|EEV87428.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Cardiobacterium hominis ATCC 15826] Length = 305 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 157/311 (50%), Gaps = 16/311 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV VLL + + L V LD TFG GG+SR+ + ALDRDP A Sbjct: 1 MSAHVTVLLHEAVQALAIRADGVYLDGTFGRGGHSRAMLAALGRAGRLYALDRDPQAAEA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +F + FS+++ D +DG++ DLGVSS Q+D RGFSF K Sbjct: 61 AAGI---DDPRFHFARCPFSRMETAFADVGAASLDGILLDLGVSSPQLDQAARGFSFGKE 117 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF---Q 186 GPLDMRM GI+A+D + + L R++ G E +A I + +A Sbjct: 118 GPLDMRMDNESGITAADWLAATDEATLARVIRDWGGEPHT--VARRIARAVIAARGKLRT 175 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + + HPAT++FQA+RI VN+E+ E+ +GL +A + LK+GG+L Sbjct: 176 TLDLAAVVADAVPRKLYKAGFHPATQTFQAIRIAVNDEVGEIERGLAAATRLLKSGGVLA 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++FH LED LVK+F + G + + + + + V P+ +VA N RS Sbjct: 236 VITFHGLEDALVKRFIRAHEGAPLPAEIPSAHDRVNPLLRLVPP-AVKPSAREVADNPRS 294 Query: 307 RSAKLRAGMRT 317 RSA+LR ++ Sbjct: 295 RSARLRKAVKI 305 >gi|160896909|ref|YP_001562491.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1] gi|263446201|sp|A9BUJ8|RSMH_DELAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160362493|gb|ABX34106.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1] Length = 309 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALL---NPAP-GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + ++A D+DP A+ Sbjct: 7 HITVLLDEAVDALLDGAAQPVAGQWVDATFGRGGHSRRILQRLGPDGALLAFDKDPDAIE 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ F L + V GV+ DLGVSS QID +RGFSF+ GP Sbjct: 67 EAARI---TDARFSIRHEGFRHLSELP-AGSVQGVLMDLGVSSPQIDNPERGFSFRFEGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G S +D + +A+ + + ++ GEE+ A IA AIV RR+S Sbjct: 123 LDMRMDTTRGQSVADWLAEADAQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRNTAE 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQALRIF+N E+EEL Q L ++ + L GG L+V+SFH Sbjct: 183 LAELVAGAVRTREAGQNPATRTFQALRIFINAELEELEQALEASLRVLAPGGRLVVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P++ +VA N RSRSA + Sbjct: 243 SLEDRIVKQFIAKHSKEV-YDRRAPFAVPTPMRLEALGR--IKPSEAEVAANARSRSAVM 299 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 300 RVARRTGVPA 309 >gi|239917869|ref|YP_002957427.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] gi|281413637|ref|ZP_06245379.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] gi|263456502|sp|C5CA38|RSMH_MICLC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239839076|gb|ACS30873.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] Length = 331 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 173/324 (53%), Gaps = 15/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGSN 60 M + H+PV+ ++V+ LL PA V +D T G GG++ + + Sbjct: 1 MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH 60 Query: 61 V--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115 + I +DRD A + E + ++ F T+ ++ + + VD ++DLGVSS Sbjct: 61 LRVIGIDRDAHAQAMAAERLGPLADRVIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 Q+D +RGF++ PLDMRM + SA+ +V + + ++L RI+ GEE+ A IA Sbjct: 121 YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR 180 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLR 233 AIV+ R AP +TT L +I+ V + HPA R+FQALRI VN E++ L + Sbjct: 181 AIVRARAEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + AL GG L+V+S+HSLEDR+ K+ ++ + + H V + +T+ Sbjct: 241 AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 PT+E+++ NRR+ SAK+RA + Sbjct: 301 KPTEEEISENRRASSAKVRAVEKI 324 >gi|223937428|ref|ZP_03629333.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] gi|223893979|gb|EEF60435.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] Length = 300 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 +L +V+A L G D T G G++ + + DRD AV Q + + Sbjct: 1 MLAEVLAALKVKSGGKYADGTLGGAGHATAILAASSPNGWLFGCDRDGVAVEAAQARLAE 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 + +F + + +++L + + + DGV+ DLGVSS Q+D +RGFSFQ+ GPLDMRM Sbjct: 61 FAGRFEISRGNYAELFETLEPESFDGVLLDLGVSSPQLDVAERGFSFQQEGPLDMRMDKR 120 Query: 141 GI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +A+D++N A+ ++L I LG+E Q+ R A AI RQ PF+TT L+ LI++ + Sbjct: 121 QQLTAADLLNHASAEELAEIFWKLGDEPQSRRFARAIEHDRQQRPFETTGQLAGLIER-L 179 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + HPATR FQALR+ VN+E+ L +GL A + LK GG L V++FHSLEDR VK Sbjct: 180 APRHGKKAHPATRVFQALRMAVNDELGSLERGLTGAVRILKPGGRLAVITFHSLEDRKVK 239 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +F +S + + + +K V+P + + N RSRSA+LR + Sbjct: 240 EFGRQKSRDYTFEGEVDVPELRKPRTPELKWVQRKAVLPGEAEQKENPRSRSAQLRIMEK 299 Query: 317 T 317 Sbjct: 300 I 300 >gi|78776996|ref|YP_393311.1| S-adenosyl-methyltransferase MraW [Sulfurimonas denitrificans DSM 1251] gi|123550493|sp|Q30SF5|RSMH_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78497536|gb|ABB44076.1| methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 307 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 13/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 HVPVL +V+ +++D T G GG++ +IA+D+D A+ + Sbjct: 5 PHVPVLYREVLEQFKNIKNGIVIDCTMGYGGHTSLILDANPNIKLIAIDQDQSAIDFSTK 64 Query: 77 TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y ++ + + FS ++ + G++ D+GVSS+Q+D +RGFSF Sbjct: 65 RLEPYGDRVVIKKGRFSTIIKEILKEYDISDIRGILADIGVSSLQLDKKERGFSFFSENL 124 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 + ++A+ V+N+ + +L R+L GE + +IA I + PF + ++LS Sbjct: 125 DMRMDEDAPLNANIVINEYSSHELQRVLLEYGELRNYKQIASFI---VSNRPFYSAKELS 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K +IHPAT QA+RI VNNE+ EL L + ++ + ++SFHS Sbjct: 182 DALRHLMPSGK--KIHPATLLMQAIRIEVNNELGELESLLDTIQERKFLDTKVAIISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + + ++ +TKK ++ +++ N RSRSAK Sbjct: 240 LEDRIVKNRFNEWRASCICPQEAMRCTCTNDNSLGNILTKKPIIAQMDEIQANPRSRSAK 299 Query: 311 LRAGM 315 LR Sbjct: 300 LRVFE 304 >gi|312880226|ref|ZP_07740026.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM 12260] gi|310783517|gb|EFQ23915.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM 12260] Length = 324 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 167/312 (53%), Gaps = 27/312 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 + HVPV+L++V+ L P +V ++D T GA G++R+ ++ +D+DP A+ Sbjct: 1 MMLHVPVMLQEVLEALRPWEEQVCVVDGTLGAAGHARAILANCPRCRLVGIDQDPSALDE 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ +L F L +P +FDLGVSSMQID +RGFSF Sbjct: 61 ARLNLAPYGDRVTLIPGNFRDLSTLLPRYEIKVCSAFLFDLGVSSMQIDREERGFSFHGE 120 Query: 131 GPLDMRMSC----SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPF 185 GPLDMRM G++A+D+VN + DL + GE+ A IA AI + R + P Sbjct: 121 GPLDMRMDSGTLSRGVTAADIVNSWELGDLIGLFRRYGEDPFAVPIARAIVMHRERYGPL 180 Query: 186 QTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT+ L +LI++T+ + HPA R FQALRI VN+E+E L + L S Sbjct: 181 MTTESLVALIRRTLPAPAQRKAGTHPARRIFQALRIAVNDEMEALRETLESLPSFCGDPS 240 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++ +++HSLEDRLVK+ + + + +TKK +VP +E++ N Sbjct: 241 TVVFITYHSLEDRLVKQHMKTWAAEG--------------KGLLVTKKPLVPREEEIREN 286 Query: 304 RRSRSAKLRAGM 315 +RSRSAKLR Sbjct: 287 KRSRSAKLRVFR 298 >gi|33519608|ref|NP_878440.1| S-adenosyl-methyltransferase MraW [Candidatus Blochmannia floridanus] gi|42559456|sp|Q7VQJ5|RSMH_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33517271|emb|CAD83655.1| S-adenosyl methionine adenyltransferase; probably methyltransferase [Candidatus Blochmannia floridanus] Length = 321 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 171/315 (54%), Gaps = 21/315 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I LN P + +D TFG GG+S +IA+DRD AV+ G E Sbjct: 6 HNSVLLHEAINALNINPSGIYIDGTFGLGGHSHYILSKLTSHGRLIAMDRDWSAVNIG-E 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ A FS++ + + ++G++ DLGV Q+ RGFSF + GP Sbjct: 65 VLTKQDGRFSIIHAPFSKMLRCIYNMNLVGLINGILLDLGVCESQLTDSSRGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA + + +A+ KD+ +L GEEK + +IA +IV +R+ P T L Sbjct: 125 LDMRMDNSVGQSAYEWIAKASQKDIEWVLRTFGEEKLSKKIARSIVLKREVYPIDRTSAL 184 Query: 192 SSLIQKTVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 S +I TV + N R HPATRSF A+RI++N E+ E+ + L+ K L GG L+V+ Sbjct: 185 SEIISDTVLYYNNRYNRRKHPATRSFLAIRIYINEELVEIMKILQDVFKLLAPGGRLVVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQEDVA 301 SF+SLEDR+VKKF S + ++ F+++ K + PT ++ Sbjct: 245 SFNSLEDRIVKKFINQYSRVFAYPPKIPLTHTQLLHKYSGTMKFKNLGK--IKPTVLEIK 302 Query: 302 FNRRSRSAKLRAGMR 316 N R+RSA LR + Sbjct: 303 KNIRARSAILRYAEK 317 >gi|167043610|gb|ABZ08304.1| putative MraW methylase family protein [uncultured marine microorganism HF4000_APKG2M17] Length = 314 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 161/316 (50%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H PVL VI L + +D T G GG++ + V+A+DRD Sbjct: 1 MSYASQYHEPVLCNTVIQGLVSRTDGIYVDGTLGGGGHTAALLDALDSSGRVVAIDRDDD 60 Query: 70 AVSCGQETMRDY--KEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 A+ + + + ++ + F+ L V G + DLGVSS QID RG Sbjct: 61 AIRETSKRLSPDLASGRLTVLKGNFADVKLLLAEAGIAKVTGFLLDLGVSSHQIDEAGRG 120 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS +K GPLDMRM G+ A+++VNQ +V++L R+L GE+ ++ RIA AI++ R + Sbjct: 121 FSHRKDGPLDMRMDRSQGVDANELVNQLDVEELARLLRRFGEQPRSGRIARAIIRARPLS 180 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + L + + +R FQA RI VN E++ L + L +E ++ G Sbjct: 181 GTEDLSRLIRDLA-----PRGQEAKTLSRVFQAFRIAVNEELDALDRVLLDSEAIMEVGA 235 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+S+HSLEDR VK++ S + + R + + P ++ IT+K ++ + ++ N Sbjct: 236 RLAVISYHSLEDRRVKRYMRSGNLEGEVQRDVFGNQITP--WRMITRKPIMADEAEIRDN 293 Query: 304 RRSRSAKLRAGMRTVE 319 RSRSA+LR R + Sbjct: 294 PRSRSARLRIVERLND 309 >gi|218248877|ref|YP_002374248.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801] gi|263447389|sp|B7K639|RSMH_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218169355|gb|ACK68092.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801] Length = 304 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 110/301 (36%), Positives = 158/301 (52%), Gaps = 25/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+ VL ++ IA LN PG LDAT G+GG+SR + A+DRD A++ Sbjct: 22 HISVLSQETIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81 Query: 78 MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + E+ +Q F+ + + G++ DLGVSS Q D +RGFSF+ G LDMR Sbjct: 82 LAELGSERLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M ++A +++NQ + L + GEE+++ +A IV+ Q TTQ ++ Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQ--QRPFKTTTQLAEAIA 197 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 Q + RIHPATR FQALRI VN E+ L + L A + L+ GG + ++SFHSLED Sbjct: 198 QTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDQAPQWLQPGGRIGIISFHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F S +TKK ++P +E+ N RSRSAKLR Sbjct: 258 RIVKYRFRDSS-----------------WLTVMTKKPIIPQREEQLKNPRSRSAKLRLAE 300 Query: 316 R 316 R Sbjct: 301 R 301 >gi|15828964|ref|NP_326324.1| methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|20139101|sp|Q98Q75|RSMH_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14089907|emb|CAC13666.1| METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 299 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 156/307 (50%), Gaps = 16/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL+ VI L P + +D T G G+S K +I D+D FA+ Sbjct: 1 MQLHKPVLLKDVIENLEINPEGIYVDLTLGYAGHSSEILKKLSSKGKLIGFDQDSFAIEK 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + F L F + Y+ + + DLGVSS+Q+D RGFS+ K Sbjct: 61 SRQRLSQISDNFVLINDNFVNFKVYLDKMNISFVDGFLLDLGVSSVQLDFAHRGFSYSKL 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ A D+VN + + L +I + K A ++A IV + P + T Sbjct: 121 GPLDMRMNLDQPLKADDIVNGYDQESLCKIFIENADVKLAKQVAKGIVN---NRPIKDTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+ ++ + + +PA FQA+RI VN+E+ L + L + LK +++++ Sbjct: 178 ELVEVIRSSLPAALVRKKNPAKAVFQAIRIAVNDELIVLKKFLAQSLDFLKKDSKMLIIT 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHS+EDR+VK FF + R I V K + PT+E++A NRR++S+ Sbjct: 238 FHSIEDRIVKDFFKRQVKNKHDRRLPIMEQKDYQV------KTIKPTEEEIAQNRRAKSS 291 Query: 310 KLRAGMR 316 KLR + Sbjct: 292 KLRIIKK 298 >gi|134302412|ref|YP_001122382.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis WY96-3418] gi|263447543|sp|A4IZB0|RSMH_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134050189|gb|ABO47260.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis WY96-3418] Length = 299 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 16/302 (5%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKE 83 ++ I LN P + +DATFG GG+S++ +IA D+D A+S +E + Sbjct: 2 QESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQFSN- 60 Query: 84 QFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138 F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GPLDMRM Sbjct: 61 -FEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMDV 119 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQK 197 GI+AS + + +V DL+ I + GEE+ A +IA I Q +TT +L+ LI+ Sbjct: 120 SKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLELAELIRA 179 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + V+SFHSLEDR+ Sbjct: 180 TI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAVISFHSLEDRI 237 Query: 258 VKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 VK+ F++ + M+P ++ + ITKK ++++ N RSRSA LR Sbjct: 238 VKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRVV 296 Query: 315 MR 316 + Sbjct: 297 EK 298 >gi|261749334|ref|YP_003257019.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497426|gb|ACX83876.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 297 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 151/302 (50%), Gaps = 13/302 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PVLL++ I L + +D TFG GG+S + K +++IA D+D A+ Sbjct: 4 YHEPVLLKESIDNLVTDRNGIYVDVTFGGGGHSSAILKKLNENASLIAFDQDKEAIKN-N 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 F + + + V GV+ DLG+SS QID RGFS Q + LDM Sbjct: 63 PIRDRRLHLFHKNFIHLKPILKKLRIEKVSGVLADLGLSSSQIDNPIRGFSHQLNCILDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ SA D++N+ + ++L I GE K A IA I++ R P TT DL + Sbjct: 123 RMNQESTHSAIDIINRYSKEELFHIFYKYGEFKNAIIIAEKILEERLRKPITTTWDLVKI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + K + + R FQ++RI VNNEI L L + + GG + ++S+HS+E Sbjct: 183 FFRKKTSFKKRKRFFS-RLFQSIRIEVNNEINVLKNFLLESSTIILPGGRMAIISYHSIE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+ K FF + +++P F+ I KKV+ P +D+ N RSRSA+LR Sbjct: 242 DRITKYFFKKGVFHKKKMNNILP-------FKMIHKKVIQPRYQDIINNPRSRSARLRIA 294 Query: 315 MR 316 + Sbjct: 295 EK 296 >gi|319760278|ref|YP_004124216.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038992|gb|ADV33542.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 330 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 22/318 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + I LN P + +D TFG+GG+SR +IA D+D +V G+ Sbjct: 3 HKSVLLHEAIEALNIDPSGIYIDGTFGSGGHSRLILSKLTKFGRLIAFDKDHLSVEIGKT 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ +FS+ +YV + ++G++ DLG+ Q+ +RGFSF K GP Sbjct: 63 IF-NQDSRFSIVHMSFSKAMNYVHNVKLLGSINGILLDLGICENQLFDANRGFSFIKDGP 121 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +G +A+ + ++ + +T +L LGEE+ +IA +I+ R+ P T +L Sbjct: 122 LDMRMDITTGQTAAQWIAMSSQEHITWVLKNLGEERFCKKIAKSILFHRRIRPIVRTHEL 181 Query: 192 SSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 S ++ + S+ + HPATRSF A+R+ +N E+E +A+ L+ L G L++ Sbjct: 182 SKIVSDIIVPSRIKKNSWNKHPATRSFLAIRMHINKELEAIAKVLKDMYNLLSNKGRLVI 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-------AVFQSITKKVVVPTQEDV 300 +SF+SLEDRLVK F S + + + + F++I K ++PT++++ Sbjct: 242 ISFNSLEDRLVKHFIYKHSRIFPELPKLALTESQIINIFSSSCQFKNIGK--IIPTKQEI 299 Query: 301 AFNRRSRSAKLRAGMRTV 318 N R+RSA LR + Sbjct: 300 KENIRARSAILRCAEKID 317 >gi|225009958|ref|ZP_03700430.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-3C] gi|225005437|gb|EEG43387.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-3C] Length = 308 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 153/308 (49%), Gaps = 19/308 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 H PV+L++ +A L P V +D TFG GG+S+ + + A D+D A++ Sbjct: 4 TTYHNPVMLQETVAGLAIDPKGVYVDVTFGGGGHSKEILRQLGPQGRLFAFDQDKDALAN 63 Query: 74 GQETMRDYKEQFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F Q + K V G++ D GVSS Q D G RGFS + G Sbjct: 64 ---TLADARFTLIPENFRFIKQFLRFHGIKQVHGILADFGVSSHQFDEGSRGFSTRFEGD 120 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SG I+A +VV DL + G+ + + IA AI+ R+ P +TT L Sbjct: 121 LDMRMNQSGAITAKEVVGSYAHDDLANMFFQYGDLRNSKAIAAAIIAFREIQPIETTAQL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + +I +QA+RI VN EI+ + + L L GG L V+S+H Sbjct: 181 KEALAPFLKGFNDAKI--LAPIYQAIRIEVNQEIQVIKEFLAQVPDLLFPGGRLSVLSYH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308 SLEDRLVK+F + + + + F+ KKV +PT+E+ N RSRS Sbjct: 239 SLEDRLVKRFIRAGQFEGEPEKDIFG------HFEVPLKKVGGLQIPTKEEQRINTRSRS 292 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 293 AKLRVAEK 300 >gi|328778908|ref|XP_001120634.2| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Apis mellifera] Length = 388 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 179/327 (54%), Gaps = 29/327 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PV++ +V+ L P+PGK+ +D TFGAGG+S + + ALDRDP A + Sbjct: 61 HIPVMVNEVLHYLEPSPGKIFVDMTFGAGGHSMKILESSPNIKIFALDRDPIAHQFALKL 120 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y EQ FS+L + V+ +FD G SSMQ+D G+RGFS K GP Sbjct: 121 SEKYPEQIIPLLGRFSELPQLLCKYKVNVNSIDGFLFDFGCSSMQLDIGERGFSLSKDGP 180 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187 LDMRM +A++V+ + +DL IL I G EK A +IA AI++ R +T Sbjct: 181 LDMRMDGFRYPQEPTAAEVLKEITEEDLAFILKIYGNEKYAKKIARAIIETRYTFRNLKT 240 Query: 188 TQDLSSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TQ+L+ LI+ + + ++ H AT++FQALRIFVNNE+ E+ G+ A LK G Sbjct: 241 TQELAQLIESVISEKRFDQLGRFTHCATKTFQALRIFVNNELNEINYGIIIAGFYLKTNG 300 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-------------HPAVFQSITK 290 LI +SFHSLED +VK+ ++ + +A + + + + ++ + K Sbjct: 301 RLITISFHSLEDTIVKRHMSANITETVANKIPLKFSDYGKHYTLTEMKALNRIPWKMLHK 360 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRT 317 V+ PT+E++ N RSRSAK RA + Sbjct: 361 HVITPTEEEINKNPRSRSAKFRAITKV 387 >gi|297569458|ref|YP_003690802.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus AHT2] gi|296925373|gb|ADH86183.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus AHT2] Length = 303 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 161/316 (50%), Gaps = 31/316 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+ +V+ L PA G + +D G GG++ + + +I D D A++ + Sbjct: 5 HQPVMPAEVLFWLAPAAGGIYVDGNLGLGGHAAAILEQSGPSGRLIGFDWDQEALARARS 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG------DRGFSF 127 + + ++ L F +L+ + + +DG++ DLG+SS+Q+D RGFSF Sbjct: 65 NLARFGDRVHLQPCNFIELEATLAELAISRIDGILLDLGLSSLQLDSSGEAAGAGRGFSF 124 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM +A+D++ + +L I GEE+QA RIA +VK+RQ P Sbjct: 125 RRPEPLDMRMDRRQELTAADLLRDLSAAELADIFYYYGEERQARRIAGWLVKQRQQTPIV 184 Query: 187 TTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ L+ V + R IH ATR FQALRI VN E+E L + L A L Sbjct: 185 TTVQLAELVAAAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPSFLSPKARF 244 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFHSLEDRLVK+ F + +T + + P + ++ N R Sbjct: 245 VVISFHSLEDRLVKRAFRE-----------------DPRLKILTTRPLQPQEAELQRNPR 287 Query: 306 SRSAKLRAGMRTVERS 321 +RSAKLR R E + Sbjct: 288 ARSAKLRVAERREETA 303 >gi|296140350|ref|YP_003647593.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM 20162] gi|296028484|gb|ADG79254.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM 20162] Length = 331 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVL +V LL PA G + +DAT GAGG+S + VI LDRD A Sbjct: 10 HVPVLATRVRELLAPALAHDGAIYVDATLGAGGHSELILDTFPNARVIGLDRDTDAHDIA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +F+ + + + D + VD ++FDLGVSSMQ+D +RGF++ Sbjct: 70 GARLARFGGRFTAVHTRYDAIAAALDDLGIETVDAILFDLGVSSMQLDRAERGFAYSVDA 129 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +A+DV+N + DL RIL G+E+ A +IA A++K R+ PF T+ Sbjct: 130 PLDMRMNADDPLTAADVLNTYSHGDLARILQRYGDERFAGKIASAVLKEREREPFTTSGR 189 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ T+ + HPA R+FQALRI VN E+ L + A L G ++ +S Sbjct: 190 LVELLYATIPAPARRTGGHPAKRTFQALRIEVNAELASLESAVPQALDVLAPEGRIVFLS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK A+R+ + A F+ +T+ T E++A N+R+ Sbjct: 250 YQSLEDRIVKAELAARTRSTTPAGLPMDLPGTGATFELLTRGAERATDEEIAENQRAAPV 309 Query: 310 KLRAGMRTV 318 ++RA R Sbjct: 310 RMRAARRLA 318 >gi|170287862|ref|YP_001738100.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2] gi|262825881|sp|B1LCF9|RSMH_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170175365|gb|ACB08417.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2] Length = 299 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 172/314 (54%), Gaps = 27/314 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H+PV++ +VI L P K+ILD T G GG+SR+ + G +I +D D Sbjct: 1 MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEV 60 Query: 71 VSCGQETMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +E ++++ ++ F + L + + VDG++ DLGVS+ Q+ +RGF+F Sbjct: 61 LRIAEEKLKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTF 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM +A V+N+ ++L RI+ GEEK+ +R K ++ P Sbjct: 121 EREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFAR--RIARKIVENRPLN 178 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT DL +++ + + + H AT++FQA+RI+VN E+E L + LR AE L GG Sbjct: 179 TTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+SFHSLEDR+VK+ F + + +T+K V P++E++ N Sbjct: 239 IVVISFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENP 281 Query: 305 RSRSAKLRAGMRTV 318 R+RS +LRA R Sbjct: 282 RARSGRLRAAERIE 295 >gi|225848381|ref|YP_002728544.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense Az-Fu1] gi|262825703|sp|C1DTV7|RSMH_SULAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225643386|gb|ACN98436.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense Az-Fu1] Length = 293 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 167/307 (54%), Gaps = 22/307 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 + +H VL +V+ +DAT G GG+S K + I +D+D +A+ Sbjct: 1 MVEHYSVLHREVLEFTKDLKEGYFIDATVGGGGHSYLILKQNPKLKIIGVDKDDYALEVA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E ++D++ +FSL +++F + V D V G++FD GVS Q+ RGFSFQ+ Sbjct: 61 KERLKDFEGRFSLVKSSFKDIDKIVKDLDVNPVVGILFDFGVSHFQLKL-PRGFSFQREE 119 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +A VVN L I+ GEEK A RIA IV+ R+ +TT++ Sbjct: 120 PLDMRMDTSSELTAYYVVNYYPESRLFNIISKYGEEKFAKRIAKNIVEYRKKKKIETTKE 179 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ ++ + +++RIHPAT++FQA+RI VNNE+ E+ + L A + G++I +S Sbjct: 180 LADIVYRSYPPNLRHSRIHPATKTFQAIRIEVNNELLEIEEALEKAIHIVSKEGIIITIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F +TKK + P ++++ N SRSA Sbjct: 240 FHSLEDRIVKNTFKKY--------------KELKFLDILTKKPITPKEDEIRENPASRSA 285 Query: 310 KLRAGMR 316 K+R R Sbjct: 286 KMRVARR 292 >gi|149022854|gb|EDL79748.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus] gi|149022855|gb|EDL79749.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus] Length = 406 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 136/345 (39%), Positives = 184/345 (53%), Gaps = 38/345 (11%) Query: 10 SSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 + H+PV++++V+ L P G+V LD TFG+GG+S++ + + V ALDR Sbjct: 61 EETDSEAMAKLHIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDR 120 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCG 121 DP A + + Y Q FSQ + + VDGV+ DLG SSMQ+D Sbjct: 121 DPVAFTLAERLSEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAP 180 Query: 122 DRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AI+ Sbjct: 181 ERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAII 240 Query: 178 KRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELA 229 + R + P TQ L+S+ +Y K H AT++FQALRIFVNNE+ EL Sbjct: 241 QARSTYPISRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELY 300 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF---------------ASRSGKVMAVRH 274 GLR+A+K LK GG L+ +SFHSLEDR+VK+F R M H Sbjct: 301 TGLRTAQKFLKPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDH 360 Query: 275 MIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I P ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 361 EIEERRCVRAPLKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIK 405 >gi|225619046|ref|YP_002720272.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1] gi|263445852|sp|C0QWF7|RSMH_BRAHW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225213865|gb|ACN82599.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1] Length = 300 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L++V++ + P K+ +DAT G GG++++ + V + +RD + ++ ++ Sbjct: 11 HTPVMLKEVLSFI-PENAKIAVDATLGEGGHTKAMLDLNLEVHSFERDSAILEIAKKRLK 69 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y ++F + T+ ++ + + D VD +++DLGVS +RGFSF+ + LDMR Sbjct: 70 NY-DKFHYYNNTYDKMIEELDDSIIGNVDFMLYDLGVSLFHFKKAERGFSFKDNVRLDMR 128 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS-LI 195 + + SA DV+N + ++L R+L GE A ++A+ IVK R +T+++L + + Sbjct: 129 LGLNEKSAYDVINGYSEEELERVLRDYGEISNARKMANVIVKERNRRKIETSRELENIIF 188 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + LK G+++V+S+HSLED Sbjct: 189 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSISNIPSILKQNGVVVVMSYHSLED 248 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R++KKFF +F+ + KV +PT E++ N SRSAK+R Sbjct: 249 RIIKKFFKENEKTK----------NKDGIFKLLNNKVKLPTNEEIKSNPASRSAKMRIAQ 298 Query: 316 RT 317 + Sbjct: 299 KV 300 >gi|224282633|ref|ZP_03645955.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313139792|ref|ZP_07801985.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313132302|gb|EFR49919.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] Length = 370 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 158/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H PVLLE+ ++L+ PA PG + +D T G G++ +F K V+ +DRD Sbjct: 1 MTDYASIHQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ E + ++F A F + D+ V+ V DLG+SS+QID D Sbjct: 61 AEALAMATERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A V+ + ++L RI GEE+ + +IA IV+RR Sbjct: 121 RGFSYAHDAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRA 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 QEPLTTSAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L+V S+HSLED+ VK F + + F +T+ V +++A Sbjct: 241 NGRLVVESYHSLEDKTVKSFMNEGLRVDAPADMPVVPDDAQPFFAPLTRGAVQAGPDEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LR Sbjct: 301 ANPRSASVRLRGVE 314 >gi|121611471|ref|YP_999278.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae EF01-2] gi|263504490|sp|A1WRK3|RSMH_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121556111|gb|ABM60260.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 167/312 (53%), Gaps = 15/312 (4%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VL E + L PAP +DATFG GG++R ++A D+DP A++ Sbjct: 7 HTTVLREPAVDALLARAGPAPAGTWVDATFGRGGHTRLILCRLGPQGRLVAFDKDPEAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 MR +FS+ F QL + GV+ DLGVSS QID +RGFSF+ GP Sbjct: 67 EA---MRITDARFSIRHQGFGQLGQLP-AGSLAGVLMDLGVSSPQIDSPERGFSFRFDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA+D + A+ + ++L GEE+ A IA AIV RRQ+ Sbjct: 123 LDMRMDTTRGLSAADWLATADAGQIAQVLRDYGEERFAGLIAKAIVARRQARGPLARTAE 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + ++ +PATR+FQALRIF+N E+EEL Q L ++ L+ GG L+V+SFH Sbjct: 183 LADLVAGAVKTREPGQNPATRTFQALRIFINAELEELQQALAASLLVLQPGGRLVVLSFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S + R + + ++ + V P +VA N R+RSA + Sbjct: 243 SLEDRIVKQFIARHSRQ-PFDRRVPFAAPQAMQLLALAR--VRPDAAEVAANPRARSAIM 299 Query: 312 RAGMRTVERSIE 323 R RT E Sbjct: 300 RVAERTQAHGAE 311 >gi|313678556|ref|YP_004056296.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45] gi|312950217|gb|ADR24812.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45] Length = 300 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 151/307 (49%), Gaps = 15/307 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+P+LL++ I LN + +D T G GG+S K N ++ D+D FA+ Sbjct: 1 MKNKHIPILLKEAINSLNIKSNGIYVDLTVGMGGHSAEILKKLDNGMLVGFDKDLFAIEE 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + F L + F + D + VDG++ DLG+SS Q+D +RGFS+ K Sbjct: 61 SRKRLSKIGLNFQLIHSDFVNVTDELAKLNITAVDGILVDLGISSPQVDNAERGFSYNKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ + + A VVN + +L I E K A ++A+AI ++ P TT Sbjct: 121 ARLDMRMNTNQVLDAHFVVNNYDENNLISIFYNYAEVKLAKQVANAI---AKNRPINTTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LS +I+ ++ +P FQA+RI VNNE + L A LK L V+S Sbjct: 178 ELSEIIKSAYPAKLLSQKNPCKAVFQAIRIEVNNEFSSIESMLSQALNLLKKDSSLAVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED LVKKFF + M + + P++ ++ N RSRSA Sbjct: 238 FHSLEDSLVKKFFGNLIKSK-HPSKMPIKEDKKYIVKVYN-----PSKSEIELNNRSRSA 291 Query: 310 KLRAGMR 316 KLR + Sbjct: 292 KLRVLTK 298 >gi|148269200|ref|YP_001243660.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1] gi|281411498|ref|YP_003345577.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10] gi|262825857|sp|A5IIR1|RSMH_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147734744|gb|ABQ46084.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1] gi|281372601|gb|ADA66163.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10] Length = 299 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 172/314 (54%), Gaps = 27/314 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H+PV++ +VI L P K+ILD T G GG+S++ + G +I +D D Sbjct: 1 MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSKAILEHCPGCRIIGIDVDSEV 60 Query: 71 VSCGQETMRDYKEQ---FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +E ++++ ++ F + L + + VDG++ DLGVS+ Q+ +RGF+F Sbjct: 61 LRIAEEKLKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTF 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM +A V+N+ ++L RI+ GEEK+ +R K ++ P Sbjct: 121 EREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFAR--RIARKIVENRPLN 178 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT DL +++ + + + H AT++FQA+RI+VN E+E L + LR AE L GG Sbjct: 179 TTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+SFHSLEDR+VK+ F + + +T+K V P++E++ N Sbjct: 239 IVVISFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENP 281 Query: 305 RSRSAKLRAGMRTV 318 R+RS +LRA R Sbjct: 282 RARSGRLRAAERIE 295 >gi|165377209|ref|NP_001107000.1| probable methyltransferase-like protein 15 isoform 1 [Homo sapiens] gi|160012249|sp|A6NJ78|MET15_HUMAN RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|119588672|gb|EAW68266.1| methyltransferase 5 domain containing 1, isoform CRA_a [Homo sapiens] Length = 407 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 187/340 (55%), Gaps = 39/340 (11%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P TQ L+S+ +Y K H AT++FQALRIFVNNE+ EL GL++A Sbjct: 247 PITRTQQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTA 306 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281 +K L+ GG L+ +SFHSLEDR+VK+F + K + + Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEV 366 Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 367 SMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium castaneum] gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum] Length = 451 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 174/332 (52%), Gaps = 30/332 (9%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV++++V+ L P + ILD TFGAGG+SR + ++ALDRDP A Sbjct: 120 SAPHVPVMVQEVLHFLKPEGNQTILDMTFGAGGHSRRILEQAPNVKLLALDRDPVAFGYA 179 Query: 75 QETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q+ ++ + + FS++ + + +D ++FD G SSMQ D RGFS Sbjct: 180 QKLAEEFPNRVTPLLGRFSEVPELLSLNKIRQNSIDAILFDFGCSSMQFDTPSRGFSVSH 239 Query: 130 SGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 +GPLDMRM +A+DV+ +A +DL +I+ + GEEK+A +IA I R Sbjct: 240 NGPLDMRMDSGRFPEDPTAADVLAKATEEDLYKIIKVYGEEKKARKIARAVIEARYLFKT 299 Query: 185 FQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT++L+ L+ H AT++FQALRIFVNNE+ E+ GL A K L Sbjct: 300 LSTTEELADLVDSVFSGEIRLDKLQRPSHNATKTFQALRIFVNNELNEINYGLIIAHKYL 359 Query: 240 KAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAHPAVFQ 286 K GG ++ ++FHSLED +VK+ S V I + + Sbjct: 360 KLGGRVVTLTFHSLEDTIVKRHLLGNLIANTPNPLPLKYSSHSFDVDGQIVKEVMESNWL 419 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 S+TK V+VP E+V N RSRSAKLRA +R Sbjct: 420 SLTKHVLVPKYEEVENNPRSRSAKLRAAIRVK 451 >gi|148273048|ref|YP_001222609.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|263446039|sp|A5CS59|RSMH_CLAM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147830978|emb|CAN01923.1| putative S-adenosyl-methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 318 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 9/298 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ + LL PA G V++DAT G G+S +F ++ LDRDP A++ Sbjct: 7 HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + V GV FDLGVSS+Q+D +RGFS+ + Sbjct: 67 GERLARFGDRVNLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G++A+ VV + + +L RI GEEK A R A IV+ R+ P T+ Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +IQ+ + HPA R FQALRI VN E+ LA+ + +A L GG ++V S+ Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAVDRLAVGGRVVVESY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ +RS V + H + + + + Q ++A N R+ S Sbjct: 247 QSLEDRIVKRELRARSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304 >gi|170781760|ref|YP_001710092.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp. sepedonicus] gi|263446044|sp|B0RI49|RSMH_CLAMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169156328|emb|CAQ01476.1| S-adenosyl-methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 318 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 160/298 (53%), Gaps = 9/298 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ + LL PA G V++DAT G G+S +F ++ LDRDP A++ Sbjct: 7 HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ L + + + V GV FDLGVSS+Q+D +RGFS+ + Sbjct: 67 GERLARFGDRVHLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G++A+ VV + + +L RI GEEK A R A IV+ R+ P T+ Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +IQ+ + HPA R FQALRI VN E+ LA+ + +A L GG ++V S+ Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAIDRLAVGGRVVVESY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ RS V + H + + + + Q ++A N R+ S Sbjct: 247 QSLEDRIVKRELRVRSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304 >gi|315637346|ref|ZP_07892564.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22] gi|315478389|gb|EFU69104.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22] Length = 300 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 10/300 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL +V+ I+D T G G+S +I D+D A++ ++ Sbjct: 4 PHIPVLYNEVLETFKDTNEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ + + F + + D + GV+ D+GVSS+Q+D +RGF F+ Sbjct: 64 RVEKFENRVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFESLTLDMRM 123 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + A+ VVN + +L RI GE ++ ++A IV R + D S Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNRPFNSSKELADFLSKKM 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 ++HPAT FQA+RI VN+E+ L + S EKA ++ ++SFHSLEDR Sbjct: 184 S------KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK +F S + ++ + A+ + ITKK ++PT ++ N RSRS+KLR Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRVF 297 >gi|229495663|ref|ZP_04389392.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC 35406] gi|229317433|gb|EEN83337.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC 35406] Length = 307 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 95/310 (30%), Positives = 153/310 (49%), Gaps = 17/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+PVL + + L P V D T G G++ + ++ + DRD A++ Sbjct: 2 YHLPVLCREAVEALLTRPNGVYADVTMGGAGHTCEILRHLGEKGHLYSFDRDQDAMANA- 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ + F L ++ GV+ V+ DLGVSS D +RGFSF+ G Sbjct: 61 ----PVDPRFTFVASDFRYLSRWMRYFGVEHLDGVLADLGVSSHHFDTAERGFSFRFEGA 116 Query: 133 LDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 L + +G +A+D++N +V+ L+ + GE K A RIA I K R S ++T + Sbjct: 117 LPDMRMNNRAGRTAADLLNTYSVEALSDLFYYYGELKDARRIAALIEKGRPSTGYRTIES 176 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ + R ++ FQALRI VN+E+ L L S L GG L+V+++ Sbjct: 177 LLEVLAPVLPPQPPLRRKKLSQLFQALRIEVNDELGALRSLLTSLTSLLAPGGRLVVLTY 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 HSLEDRLVK++ G +V P + + + +K ++P+ ++A N R+ Sbjct: 237 HSLEDRLVKEWGKGLLGTSQSVEDNDPMAAIYGQKRSEIEVVNRKPILPSDAEIAENPRA 296 Query: 307 RSAKLRAGMR 316 RSAK+R R Sbjct: 297 RSAKMRILQR 306 >gi|332836127|ref|XP_003313021.1| PREDICTED: methyltransferase like 15 isoform 1 [Pan troglodytes] Length = 407 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 186/340 (54%), Gaps = 39/340 (11%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P TQ L+ + VY K H AT++FQALRIFVNNE+ EL GL++A Sbjct: 247 PITRTQQLAGIVAGAFPPSAVYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTA 306 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281 +K L+ GG L+ +SFHSLEDR+VK+F + K + + Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEV 366 Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 367 SMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|88856505|ref|ZP_01131162.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1] gi|88814159|gb|EAR24024.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1] Length = 329 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PVLLE+ I LL PA PG V++D T G G++ +F + + + +DRD A++ Sbjct: 19 HTPVLLERSIELLAPALEAPGAVLVDGTLGMAGHAEAFLQRFPELTLVGIDRDEDALAIA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + A + ++ + V G+ FDLGVSS+Q+D +RGFS+ + Sbjct: 79 RRRLEPFASRTHFVHAVYEEIPTALASLGFPNVQGIFFDLGVSSLQLDRVERGFSYSQDA 138 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A ++ + +L RI G+EK A R A IV+ R+ P T+ Sbjct: 139 PLDMRMDASTPVTAEHILATYSELELRRIFYSYGDEKLAPRFASRIVQFREQQPLTTSAQ 198 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L LI + HPA R FQALRI VN E+ L + + +A +L GG ++V+++ Sbjct: 199 LVELIIAATPAAAQRAGHPAKRVFQALRIEVNQELSVLERAIPAAINSLALGGRMVVLAY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ RS + H A + + + + + N R++ + Sbjct: 259 QSLEDRIVKRELQRRSRSTAPAGLPVELPEHKAELKLLVRGSEQASDAEQQTNPRAKPVR 318 Query: 311 LRAGMR 316 LRA R Sbjct: 319 LRAIER 324 >gi|263447881|sp|A7ZD05|RSMH_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 307 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 156/310 (50%), Gaps = 11/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H+ VLL++V++ +D T G G+S + N+ IA D+D A++ Sbjct: 1 MQSPHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINF 59 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 + + + + ++++ FS+L + + ++ D+GVSS+QID DRGF S Sbjct: 60 SLKKLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSS 119 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 G SA DVVN + +L RI GE K AS IA+ I+ R + ++ Sbjct: 120 ALDMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKE 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+++I + K + PA +FQA+RI VN E++EL L S EK L+ +++F Sbjct: 180 LANIIG--IAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+ F + + + + + + +TKK + +Q ++A N RS+S Sbjct: 238 HSLEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKS 297 Query: 309 AKLRAGMRTV 318 AKLR + Sbjct: 298 AKLRVF-KIK 306 >gi|153952604|ref|YP_001398362.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. doylei 269.97] gi|263445759|sp|A7H4D2|RSMH_CAMJD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152940050|gb|ABS44791.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. doylei 269.97] Length = 310 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 97/301 (32%), Positives = 150/301 (49%), Gaps = 7/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K + IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSETLLKNHPGLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS Sbjct: 64 RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMR 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S ISA +VVN + LT I GE A IA I R ++ ++L +I Sbjct: 124 MNQNSKISAYEVVNAYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLED Sbjct: 184 GKGKQNHR--KISKATLAFQAIRIEVNQELKVLKDFLGYLENLKPKNCILAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 242 RIVKNFFKKWSKNCICDEKIMRCKCGNNHSLGQIITKKSISASKEELLKNSRSSCAKMRA 301 Query: 314 G 314 Sbjct: 302 F 302 >gi|257061938|ref|YP_003139826.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802] gi|256592104|gb|ACV02991.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802] Length = 304 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 158/301 (52%), Gaps = 25/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LDAT G+GG+SR + A+DRD A++ Sbjct: 22 HISVLSQEMIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81 Query: 78 MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++ +Q F+ + + G++ DLGVSS Q D +RGFSF+ G LDMR Sbjct: 82 LAELGSDRLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M ++A +++NQ + L + GEE+++ +A IV+ Q TTQ ++ Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQ--QRPFKTTTQLAEAIA 197 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 Q + RIHPATR FQALRI VN E+ L + L A + L+ GG + ++SFHSLED Sbjct: 198 QTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDRAPQWLQPGGRIGIISFHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F +TKK ++P +E+ N RSRSAKLR Sbjct: 258 RIVKYRFRDSC-----------------WLTVMTKKPIIPQREEQLKNPRSRSAKLRLAE 300 Query: 316 R 316 R Sbjct: 301 R 301 >gi|311063958|ref|YP_003970683.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010] gi|310866277|gb|ADP35646.1| MraW S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010] Length = 370 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 157/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H PVLLE+ ++L+ PA PG + +D T G G++ +F K V+ +DRD Sbjct: 1 MTDYASIHQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ E + ++F A F + D+ V+ V DLG+SS+QID D Sbjct: 61 AEALAMATERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S + V+ + ++L RI GEE+ + +IA IV+RR Sbjct: 121 RGFSYAHDAPLDMRMDVSQPLTAQCVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRA 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 QEPLTTSAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L+V S+HSLED+ VK F + + F +T+ V +++A Sbjct: 241 NGRLVVESYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQAGPDEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LR Sbjct: 301 ANPRSASVRLRGVE 314 >gi|163846346|ref|YP_001634390.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus J-10-fl] gi|222524111|ref|YP_002568582.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl] gi|263445774|sp|A9WG80|RSMH_CHLAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446400|sp|B9LKK0|RSMH_CHLSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163667635|gb|ABY34001.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus J-10-fl] gi|222447990|gb|ACM52256.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl] Length = 301 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 177/310 (57%), Gaps = 22/310 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H PVLL +V+ +L P P LDAT G GG++ + + G ++ +D DP A++ Sbjct: 4 TFQHTPVLLTEVLTMLAPRPAGQYLDATVGGGGHALAVLQAAQPGGRLLGIDADPAALAA 63 Query: 74 GQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ EQ L +F+ L DG++FDLGVSS Q+D +RGFSF Sbjct: 64 TAARLQAAGLIEQAVLCHGSFADLATLAATAGFGAFDGILFDLGVSSYQLDTPERGFSFT 123 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMR+ G++A+D+VN+ + ++L I+ + GEE A RIA AIV+ R++ PFQ Sbjct: 124 ADGPLDMRLDPTQGLTAADMVNRLSERELADIIFLYGEEHAARRIARAIVEHRRTQPFQR 183 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ + V ++ RIHPATR+FQALRI VN E++ L L A L GG L V Sbjct: 184 TAELAEVVARAVGG-RHGRIHPATRTFQALRIAVNQELDRLRATLPQAVDLLAPGGRLAV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F + + +TKK +VPT +VA N R+R Sbjct: 243 ISFHSLEDRIVKQFLRAEASGET------------PRLTIVTKKPIVPTAAEVANNPRAR 290 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 291 SAKLRVATRI 300 >gi|291276974|ref|YP_003516746.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter mustelae 12198] gi|290964168|emb|CBG40013.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter mustelae 12198] Length = 303 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 14/305 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL +V+ + +I+D T G GG+S++ + +I +D+D A + Sbjct: 3 TSPHIPVLLHEVLDIFKDIKEGIIIDCTLGFGGHSKALLEQNQSIRIIGIDKDKDARAYA 62 Query: 75 QETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +KE+F + F + + + + GV+ D+GVSS Q+D +GF F+ Sbjct: 63 TKLLSPFKERFCCVASGFGEQIEPLIAQYGREIKGVLADIGVSSYQLDTPKKGFGFESEV 122 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 + + ISA ++N + L R+ GE +++ ++A + + R F + Sbjct: 123 LDMRMDNDAHISAKTILNHYSAFALERVFREYGELRESKKLAQLLSQERTRTDFGDPKTF 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ ++ +N +I P +QALRI VN E+EEL + L V++FH Sbjct: 183 NAFLKA---HFRNPKILPL--VYQALRIEVNGELEELER--LLLHAQKLKDARLCVITFH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR++K+ S + + + H +TKK ++P+QE++ N RSRSA Sbjct: 236 SLEDRILKQALKSYTKSCICPLEALKCTCGNHHQKGVLLTKKPIIPSQEEIKRNPRSRSA 295 Query: 310 KLRAG 314 K+RA Sbjct: 296 KMRAF 300 >gi|284030811|ref|YP_003380742.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836] gi|283810104|gb|ADB31943.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836] Length = 324 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 178/295 (60%), Gaps = 10/295 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++V+ALL P PG V++DAT G GG+S +F + + +I LDRDP A+ Sbjct: 10 HVPVMLDRVVALLAPALQQPGSVLVDATLGLGGHSEAFLQRCPEARLIGLDRDPAALRLA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y + +L A + +L + + +DG++FDLGVSSMQ+D DRGF++ + Sbjct: 70 GERLAPYAGRTTLVHAVYDELPRVLDELGVPAIDGILFDLGVSSMQLDEADRGFAYAQDA 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A+DV+N + DL RIL GEEK A +IA IV+ R++ PF + Sbjct: 130 PLDMRMDPTAPTTAADVLNTYSAADLARILFQYGEEKFARKIADRIVRARETEPFSHSAR 189 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS L++ + ++ HPA R+FQALRI VN+E++ L + L +A AL G ++V+S Sbjct: 190 LSELVRDAIPQAARRTGGHPAKRTFQALRIEVNSELDVLRRALPAALGALALHGRIVVMS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +HSLEDR+ K+ A+ + + + H + +T+ PT+++VA N Sbjct: 250 YHSLEDRITKQTLAAATRSDVPDDLPVIPAGHEPYLKLLTRGAERPTEDEVAENP 304 >gi|171462979|ref|YP_001797092.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. necessarius STIR1] gi|262824846|sp|B1XT01|RSMH_POLNS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171192517|gb|ACB43478.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 316 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 181/314 (57%), Gaps = 25/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGK------------VILDATFGAGGYSRSFCKMG---SNVIAL 64 H PVLL + + L G +++D TFG GG++++ K +++I+ Sbjct: 5 HRPVLLAEAVTALV---GGPLIQNQNSENHILVIDGTFGRGGHTQALLKELNPSAHMISF 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 D+D A++ Q+ + + +F+Q+ Y + VDG++ DLG+SS Q+D RG Sbjct: 62 DKDLDAIAVAQKI---NDPRLKIVHDSFAQMDQYAEAESVDGILLDLGISSPQVDEAHRG 118 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF++ GPLDMRM+ G++A++ + QA+++++T ++ GEE+ A +IA AIV +R+ Sbjct: 119 FSFRREGPLDMRMNTDHGLTAAEWLEQASLEEITHVIKTYGEERFAFQIARAIVAKREDG 178 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T + + +V ++ PATR+FQALRIF+N E+E+L GL++A K LK G Sbjct: 179 LPPKTTTQLASLVSSVVRTREAGQDPATRTFQALRIFINRELEDLELGLKAAMKLLKPGA 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+F + + + + + + + I++ + P+ +V+ Sbjct: 239 RLAVISFHSLEDRIVKQFMQAHAKVDVPRGLPVREKDLPQSALKIISR--LKPSDAEVSE 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RSA +R + Sbjct: 297 NPRARSAIMRVAEK 310 >gi|300871667|ref|YP_003786540.1| S-adenosyl-methyltransferase MraW [Brachyspira pilosicoli 95/1000] gi|300689368|gb|ADK32039.1| S-adenosyl-methyltransferase, MraW [Brachyspira pilosicoli 95/1000] Length = 297 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 168/299 (56%), Gaps = 16/299 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L+++++ + P + +DAT G GG++++ + V + +RD + +E ++ Sbjct: 7 HTPVMLKEILSFI-PENANIAVDATLGEGGHTKAMLDLNLEVHSFERDDKILEVAKERLK 65 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DYK +F + T+ ++ + + + VD +++DLGVS +RGFSF+ LDMR Sbjct: 66 DYK-KFHYYNNTYDKMLEELNENVIGNVDFMLYDLGVSMFHFKKANRGFSFKDDVKLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + SA DV+N + K+L R+ GE AS+IA+ IV R+ +T+++L ++I Sbjct: 125 LGINNKSAYDVINSYSEKELERVFREYGEMHNASKIANIIVNERKKKSIETSKELENIIF 184 Query: 197 KTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +K +IHPAT FQA+RI VN+E+ L + + + K LK GG+ ++S+HSLED Sbjct: 185 HHTDKAKRFGKIHPATLVFQAIRIEVNDELNILEKSISNISKILKNGGVAAIMSYHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F +F+ + KV+ PT E++ N SRSAKLR Sbjct: 245 RIVKRFLKDNEKTK----------NKDGIFKLLNSKVITPTNEEIKLNPASRSAKLRVA 293 >gi|319941799|ref|ZP_08016121.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Sutterella wadsworthensis 3_1_45B] gi|319804732|gb|EFW01599.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Sutterella wadsworthensis 3_1_45B] Length = 315 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 174/310 (56%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL + L P + +D TFG GG+SR + +IA DRDP Sbjct: 6 HLPVLSREAPEALVARPDGLYVDGTFGRGGHSRLILERLAQQGRLIAFDRDPE---AVAA 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + A FS +++ + D + VDG+ D+GVSS QID RGFSF+ GPL Sbjct: 63 AAAIKDPRFQIVHAPFSAMKERLGDLGIRQVDGIFLDIGVSSPQIDDPSRGFSFRFEGPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A++ + +A+V+++ +L GEE+ A RIA AIV+ R AP TT L+ Sbjct: 123 DMRMDTSCGETAAEWLARASVEEIAEVLADFGEERFAHRIARAIVEARSRAPITTTGALA 182 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ V ++ + HPATR+FQA+RI VN+E++EL L SA L G L V+SFH Sbjct: 183 KLVEAAVPKNRRDAAQHPATRTFQAVRIQVNHELDELKTTLESAGALLAPAGRLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+FF R + R +P+ F + + ++PT+ + N R+RS Sbjct: 243 SLEDRIVKRFFEKRLHPDRDLDPRLPMPAGFNAQPWFCDVIR--ILPTKSEAESNPRARS 300 Query: 309 AKLRAGMRTV 318 + LR G RT Sbjct: 301 SVLRVGTRTA 310 >gi|227504684|ref|ZP_03934733.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC 6940] gi|227198694|gb|EEI78742.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC 6940] Length = 355 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 191/354 (53%), Gaps = 28/354 (7%) Query: 2 ESKSCKTMSSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRS 53 + K+ +++ I++ I + HVPV+ E++ LL PA V++D T GAGG++ Sbjct: 4 QDKNTDNVANNINYDIAENHGHVPVMRERMAQLLAPAIEAAGSNAVVVDGTLGAGGHADF 63 Query: 54 FCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVP 100 F + +V+ +DRD +++ E + ++++F A F + + D Sbjct: 64 FLRTFPNLHVVGVDRDGASLAAATERLEPFEDRFVGVNARFDEVGGEIARGEGAIFDIAR 123 Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRI 159 + G+ G +FDLGVSSMQ+D +RGF+++ PLDMRM GI+A+DV+N + DL RI Sbjct: 124 EHGIAGALFDLGVSSMQLDQVERGFAYKTDAPLDMRMDPSHGITAADVLNTYSHGDLARI 183 Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALR 218 L G+E+ A +IA A++K R+ PF ++ L L+ T+ ++ HPA R+FQALR Sbjct: 184 LKTYGDERFAGKIASAVLKEREKEPFSNSERLVELLYATIPAATRRTGGHPAKRTFQALR 243 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278 + VN E+E + Q + AL GG + +S+ SLEDR VK+ FA + + Sbjct: 244 VEVNRELEAIEQVIPVITDALHVGGRAVFMSYQSLEDRTVKQAFAELAASKTPAGLPMDL 303 Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332 F+++T+ + E++ N R+ S ++RA R +E + +H P Sbjct: 304 PGTAPKFKTVTRGAEKASAEEIEENSRAASVRVRAIER-----LEGEPHLHPPG 352 >gi|28571637|ref|NP_788632.1| CG14683, isoform A [Drosophila melanogaster] gi|62472493|ref|NP_001014615.1| CG14683, isoform B [Drosophila melanogaster] gi|74869026|sp|Q9VGY5|MET15_DROME RecName: Full=Probable methyltransferase-like protein 15 homolog gi|15291185|gb|AAK92861.1| GH10770p [Drosophila melanogaster] gi|28381233|gb|AAO41540.1| CG14683, isoform A [Drosophila melanogaster] gi|61679326|gb|AAX52945.1| CG14683, isoform B [Drosophila melanogaster] gi|220945126|gb|ACL85106.1| CG14683-PA [synthetic construct] gi|220954938|gb|ACL90012.1| CG14683-PA [synthetic construct] Length = 356 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 120/339 (35%), Positives = 172/339 (50%), Gaps = 31/339 (9%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 S+I T HVPVL + I L P PG D TFGAGG++R + + V ALDRDP Sbjct: 18 SSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDP 77 Query: 69 FAVSCGQET--MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCG 121 A ++ ++K + FS L + VDG++FD G SSMQ D Sbjct: 78 LAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEA 137 Query: 122 DRGFSFQKSGPLDMRM---SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IV 177 RGFS + GPLDMRM G++A+DV+ DL +IL + GEEK A +IA + Sbjct: 138 VRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVD 197 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGL 232 R +TT+ L+ +I+ + H AT++FQA+RIFVNNE+ E+ G+ Sbjct: 198 ARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGM 257 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSN 279 A + L+ G L+ ++FHSLED +VK+ S I + Sbjct: 258 VLANEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILES 317 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 ++ + + V+VP ++VA N RSRSAKLRA ++T Sbjct: 318 LTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKTN 356 >gi|269115003|ref|YP_003302766.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis] gi|268322628|emb|CAX37363.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis ATCC 23114] Length = 300 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 162/304 (53%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +H+PVLL +VI L+ P + +D T G GG+S+ K +I D+D A++ +E Sbjct: 2 EHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESRE 61 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F L ++ F + + VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 62 KLIKISQNFILIKSDFRNITCELKKLNIDKVDGILADLGVSSPQLDDPNRGFSYSINSDL 121 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A +++N A K++ IL + K ++ IA AI ++ P + L+ Sbjct: 122 DMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAI---VKNRPISDSFTLN 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ ++ + +P+ FQA RI VN+E+ L++ L LK G + +++FHS Sbjct: 179 QIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 ED +VKKF+ + + ++ ++ H +KV+ P+ ++ N+RSRSAKLR Sbjct: 239 KEDVIVKKFYQNLNYFDPKLKKILIVETHKW-----HQKVIFPSSKEEEINKRSRSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 VITK 297 >gi|330444381|ref|YP_004377367.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58] gi|328807491|gb|AEB41664.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58] Length = 296 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 20/307 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H+PVL+ + ++L + + + D T GAGG++++F ++ A DRDP A++ Sbjct: 1 MAPSHIPVLVHECLSLFSQSTPRKFCDVTVGAGGHAKAFLTAYPSITSYDASDRDPLALT 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +KE+ L A+F L + + DGV+ DLGVSSMQ+D RGFSFQ Sbjct: 61 LSSQALEPFKERVHLRHASFQDLSHSLEEHVYDGVIADLGVSSMQLDDLSRGFSFQGEEH 120 Query: 133 LDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GISAS+V+ ++L +I GEE + A AIV R+ +T +D Sbjct: 121 YLDMRMDPTQGISASEVLQCLREEELGKIFREYGEEPLWRQAAKAIVHFRKHKRIETVRD 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L + + +IHP T FQALR+FVN E ++L L SA + L G ++++S Sbjct: 181 LKEATSRVFPSYRLRKKIHPLTLIFQALRVFVNGEDQQLRTLLESAMRWLAPQGRVVIIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 F S EDR VK+FF + + +TKKV++PT +++ N RSRSA Sbjct: 241 FCSSEDRPVKQFFRHAEATG--------------LGRVVTKKVIMPTFQEIRRNPRSRSA 286 Query: 310 KLRAGMR 316 KLR + Sbjct: 287 KLRCFEK 293 >gi|66809695|ref|XP_638570.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4] gi|60467186|gb|EAL65220.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4] Length = 367 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 173/314 (55%), Gaps = 23/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H PV +++V+ +LNP P KV +DATFG GG+SR + VIA DRDP + Sbjct: 59 HKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCKDCYVIAFDRDPKVFEMTKPL 118 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKS-- 130 ++K++ +TFS ++ + +K +D +++D GVSS QID DRGFSF+K Sbjct: 119 RSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFSFKKELE 178 Query: 131 --GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + M + S I+A D++N + KDL I GEEK IA+ I+++R+ P + T Sbjct: 179 GPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKIEPIKNT 238 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL +++ ++ + + +R F++LR+FVN+E+ E+ GL E+ L+ L+ + Sbjct: 239 SDLVKIVESSIPYPMALKT--ISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPNSPLLAI 296 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHS+EDR+VK++ + F K + P++E++ +N RS+S Sbjct: 297 SFHSIEDRIVKQYLNKYTT----------IEEPTFKFSPTYKSPIFPSKEELEWNPRSKS 346 Query: 309 AKLRAGMRTVERSI 322 A LR +RT + I Sbjct: 347 AILRTAIRTSNKPI 360 >gi|328542958|ref|YP_004303067.1| ribosomal RNA small subunit methyltransferase H [polymorphum gilvum SL003B-26A1] gi|326412704|gb|ADZ69767.1| Ribosomal RNA small subunit methyltransferase H [Polymorphum gilvum SL003B-26A1] Length = 346 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 141/292 (48%), Positives = 192/292 (65%), Gaps = 5/292 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 HVPVLL V+ L PA G+VI+D TFGAGGYSR+F + G+ VI +DRDP A++ GQ+ Sbjct: 17 ARHVPVLLSAVLDTLRPAEGEVIVDGTFGAGGYSRAFLEAGAAVIGVDRDPDAIAGGQDL 76 Query: 78 MRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +R + L F+ L + + VDGVV DLGVSSMQID +RGFSF + GPLD Sbjct: 77 VRASGGRLVLVPGRFADLDAHARACGHEAVDGVVLDLGVSSMQIDQAERGFSFMRDGPLD 136 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM +G SA+DVVN +DLTRI+G+LGEEK+A+ +A AI + R PF T +L+ L Sbjct: 137 MRMEQAGPSAADVVNTLPARDLTRIIGLLGEEKRAAAVARAISEARAEKPFTRTGELADL 196 Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V K IHPATR+FQALRI+VN E+ + A+ L +AE+ L+ GG L+VVSFHSL Sbjct: 197 VERVVGRAPKKAHIHPATRTFQALRIYVNGELHQAAEALTAAERILRPGGRLVVVSFHSL 256 Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 EDR+VK+F A R+ + RH+ + PA F+ + K V + + + N Sbjct: 257 EDRIVKRFLADRTRVRAGGSRHLPEAEVPPATFELLVKGAVEADEAETSANP 308 >gi|222100677|ref|YP_002535245.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Thermotoga neapolitana DSM 4359] gi|262825854|sp|B9KA96|RSMH_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221573067|gb|ACM23879.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Thermotoga neapolitana DSM 4359] Length = 300 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 180/316 (56%), Gaps = 28/316 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H+PV++ +VI L P K+ILD T G GG++R+ + G +I +D D Sbjct: 1 MRKYTHYHIPVMVREVIEYLKPEDEKIILDCTVGEGGHARAILEHCPGCKLIGIDVDSEV 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ ++D+ ++ SLF+A++ L + + VDG++ DLGVS+ Q+ +RGF+F Sbjct: 61 LQIAEKKLKDFSDRVSLFKASYRDADFLLKTLEIEKVDGILLDLGVSTYQLKGENRGFTF 120 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM I+A V+N+ + ++L RI+ GEEK+ +R K ++ P Sbjct: 121 EREEPLDMRMDLESEITAQKVLNELSEEELARIIFEYGEEKRYAR--RIARKIVENRPLN 178 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQG-LRSAEKALKAGG 243 TT DL + + + + + H ATR+FQA+RI+VN E+E L + L AEK L+ GG Sbjct: 179 TTLDLVKAVSEALPSHEIRRRKRHFATRTFQAIRIYVNRELENLREFLLNKAEKLLRVGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+SFHSLEDR+VK+ F + + +T+K V P++E+V N Sbjct: 239 RIVVISFHSLEDRIVKEAFRNS-----------------RKLRILTEKPVRPSEEEVREN 281 Query: 304 RRSRSAKLRAGMRTVE 319 RSRSA+LRA E Sbjct: 282 PRSRSARLRAAELVEE 297 >gi|194741008|ref|XP_001952981.1| GF17544 [Drosophila ananassae] gi|190626040|gb|EDV41564.1| GF17544 [Drosophila ananassae] Length = 361 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 120/333 (36%), Positives = 173/333 (51%), Gaps = 31/333 (9%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVL + I L P PG +D TFGAGG++R + + V ALDRDP A Sbjct: 29 QPPHVPVLCDTAIEHLQPLPGGTYIDMTFGAGGHTRRIFEKCPEAKVYALDRDPVAHQLA 88 Query: 75 QET--MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSF 127 +E YK + FS + + ++G++FD G SSMQ D +RGFS Sbjct: 89 RELSQKEKYKGRLIPLLGKFSDIPKLFEEHGLSRNSLNGILFDFGCSSMQFDEAERGFSI 148 Query: 128 QKSGPLDMRM---SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSA 183 K GPLDMRM G++A++V+++ DL RIL I GEEK A +IA I R+ Sbjct: 149 SKDGPLDMRMDGGHSGGVTAAEVLSKIEETDLARILRIYGEEKAAKKIARGLIDARKALV 208 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +TT+ L+ L++ + H AT++FQALRIFVNNE+ E+ G+ A + Sbjct: 209 QIETTKQLADLVEDILSSGPRRDKLQRPSHSATKTFQALRIFVNNELNEINYGMVLANEI 268 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVF 285 L+ G L+ ++FHSLED +VK+ SG + + + + Sbjct: 269 LRREGRLVTITFHSLEDTIVKRHINGNVVAGAANPLPLKYSGHDIIDDPEMLQSLVQTNW 328 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + + V+VP E+VA N RSRSAKLRA ++ Sbjct: 329 KPLHRHVIVPDAEEVARNSRSRSAKLRAAVKVN 361 >gi|326919741|ref|XP_003206136.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Meleagris gallopavo] Length = 410 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 135/354 (38%), Positives = 190/354 (53%), Gaps = 39/354 (11%) Query: 2 ESKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 +S++ + + S + G H+PV++E+VI L+P G+ LD TFGAGG+S + + SN Sbjct: 56 KSETKELLHSTENKNFGRLHIPVMVEEVINCLSPQSGQRFLDMTFGAGGHSTALLEKASN 115 Query: 61 --VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGV 113 + ALDRDP A Q+ Y +Q FSQ + + +DGV+ D G Sbjct: 116 ITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGC 175 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQA 169 SSMQ D +RGFS QK GPLDMRM +A+DVVN + + L IL GEEK A Sbjct: 176 SSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHA 235 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFV 221 +IA AIV+ R P TQ L+S++ S H AT++FQ LRIFV Sbjct: 236 KKIASAIVQARSIYPITRTQQLASIVAGAFPASALYARKDLLQRPTHVATKTFQGLRIFV 295 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRH 274 N+E+ EL GL++AEK LK GG L+ +SFHSLEDR++K+F G +R Sbjct: 296 NDELHELLIGLKTAEKFLKPGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSRQKIRR 355 Query: 275 MIPSNAHP------------AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + + + + I KKV+ P +D+ N R+RSAKLRA ++ Sbjct: 356 ALKNCSKEENTQEFPHGKSNSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 409 >gi|121998878|ref|YP_001003665.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1] gi|263456068|sp|A1WYV1|RSMH_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121590283|gb|ABM62863.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1] Length = 324 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 176/316 (55%), Gaps = 13/316 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 + T H PVL +A L+ P +DAT+G GG++R + + DRD Sbjct: 10 AEQEPTATTHRPVLYGAALAALDVRPDGCYVDATYGRGGHARGILERLGPQGRLWVADRD 69 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDR 123 P A++ +ET+ D + ++ A ++L + ++G VDG++ DLG+SS Q+D DR Sbjct: 70 PEALAHARETLAD-DPRCTVLGAELAELPRLLAEQGLAAGVDGLLADLGISSPQVDNPDR 128 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQ 181 GFSFQ+ GPLDMRM + G SA+ ++ + + +D+ +L LGEE+ A RIA AIV R Sbjct: 129 GFSFQRDGPLDMRMDPTTGESAAALLERLSARDIAGVLRQLGEERHAGRIARAIVAARDA 188 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT L+ L+++ V + R HPATR+FQALRI VN+E+ +L + L L Sbjct: 189 GDPPRTTLALARLVEQAVPRREPGR-HPATRTFQALRIAVNDELGQLDRFLEGVIDLLAP 247 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR VK+F S + +P + + + + + +V Sbjct: 248 GGRLAVIAFHSLEDRRVKRFIRRASSVGDLPPSVPVPPAGCQPRLRPLGRD-LRADEGEV 306 Query: 301 AFNRRSRSAKLRAGMR 316 A N R+RSA LR R Sbjct: 307 AGNPRARSAVLRVAER 322 >gi|317506606|ref|ZP_07964398.1| MraW methylase [Segniliparus rugosus ATCC BAA-974] gi|316255115|gb|EFV14393.1| MraW methylase [Segniliparus rugosus ATCC BAA-974] Length = 316 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 171/309 (55%), Gaps = 8/309 (2%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L +V++LL PA P V++D T G GG++R+ + V+ +DRD A+ +E + Sbjct: 1 MLNRVVSLLAPAFDAPDPVLVDGTLGLGGHTRALLERFPTLRVVGMDRDAKAIEVAKERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ A + +++ + D + V G + DLGVSSMQ+D +RGF++ K PLDMRM Sbjct: 61 GGLADRVRFVHARYDEVERALGDGENVQGYLLDLGVSSMQLDQAERGFAYSKDAPLDMRM 120 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A +V+ K+L R+L GEE+ A+RIA IV+RR + P ++ +L LI Sbjct: 121 DTSAELTAHEVLATYGEKELARVLRTYGEERFAARIAAEIVRRRATEPLASSAELVRLID 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + K HPA R+FQALR+ VN+E+ L L A AL G ++V+++ SLED Sbjct: 181 DVIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAVLPKALAALAPQGRIVVLAYQSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FA + + + A F S+T+ + +E+ + N R+ S +LRA Sbjct: 241 RIVKDEFARATTSRTPIGLPVELPGFEAEFVSLTRGAELAGEEETSENPRAASVRLRAVE 300 Query: 316 RTVERSIED 324 R E+ Sbjct: 301 RVSGNRGEE 309 >gi|288574844|ref|ZP_06393201.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570585|gb|EFC92142.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans DSM 11002] Length = 332 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 122/309 (39%), Positives = 179/309 (57%), Gaps = 25/309 (8%) Query: 19 DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +HVPV+LE+V+ L I+DAT G GGYS + G NV +DRDP A++ Sbjct: 4 EHVPVMLEEVLEYLKKTGSSGPIVDATLGLGGYSEAILARIEGVNVFGIDRDPQALTMAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++F + FS L+ + D V GVVFDLGVS+MQI +RGFSF+++GP Sbjct: 64 ERLSPFGKRFIPIKGNFSDLKGLLEDIDGIPVGGVVFDLGVSNMQISLPERGFSFRENGP 123 Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQ 189 LDMRM+ G SA+D+V + +L+ I GEE+ A IA +IV+ R+ + P + T Sbjct: 124 LDMRMNHEDGGESAADMVRELTAPELSEIFRKYGEERFAWPIAKSIVRYREKSGPIEDTD 183 Query: 190 DLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+K + + + HPA + FQALRI VN E++ L +GL SA + + GG+++V Sbjct: 184 TLVEVIRKALPAPVMRKAKGHPARKVFQALRIAVNKEMDALDEGLNSALEVISPGGVVVV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 VS+HSLEDR+VK F + +TKK +VP+ ++ N +SR Sbjct: 244 VSYHSLEDRIVKWKFRGWKDQGE--------------GTILTKKALVPSDLEIENNTKSR 289 Query: 308 SAKLRAGMR 316 SAKLRA + Sbjct: 290 SAKLRAFAK 298 >gi|25028617|ref|NP_738671.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] gi|259507675|ref|ZP_05750575.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] gi|30173070|sp|Q8FNT2|RSMH_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23493903|dbj|BAC18871.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164722|gb|EEW49276.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] Length = 338 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 107/327 (32%), Positives = 173/327 (52%), Gaps = 20/327 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F + +VI LDRD A+ Sbjct: 12 HVPVMRDRMAALIADHVREMGDRAVIVDATLGAGGHAEHFLTVFPEAHVIGLDRDENALR 71 Query: 73 CGQETMRDYKEQFSLFQATFS-----------QLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 E + + ++F + F + D +G+ G +FDLGVSSMQ+D Sbjct: 72 DAGERLARFGDRFLGVKTRFDGLSQVLATGEGDILDLARKEGISGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM GI+A+D++N + D+ R+L G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDPTQGITAADILNTYSHGDIARVLKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E L+ L AL Sbjct: 192 EKEPFTTSARLVELLYDTIPAATRRTGGHPAKRTFQALRVEVNRELESLSNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ S ED+LVK+FF + + F+ +T+ ++ + Sbjct: 252 NVGGRAVFMSYQSHEDKLVKRFFTELTTSKTPPGLPVDLPGTAPRFRQVTRGAETASEAE 311 Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDS 326 + N R+ K+RA R E + ++ Sbjct: 312 IEENPRAAPVKVRAIERIAEHTENTEN 338 >gi|93007204|ref|YP_581641.1| methyltransferase [Psychrobacter cryohalolentis K5] gi|92394882|gb|ABE76157.1| methyltransferase [Psychrobacter cryohalolentis K5] Length = 383 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 172/353 (48%), Gaps = 37/353 (10%) Query: 2 ESKSCKTMS------SAIHHTIGDHVPVLLEKVIALL----------------NPAPGKV 39 + + K M + H VLL++ +A + + + Sbjct: 35 STSTQKLMQEPSEDQATSDELSFVHDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGI 94 Query: 40 ILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +DATFG GG+SR ++ +I D+DP A+S +E + + + + +F+ L Sbjct: 95 YVDATFGRGGHSRLLLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLT 153 Query: 97 D---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152 D + VDG++ DLG+SS QID G RGFSF + G +DMRM G S ++ + + Sbjct: 154 DSLAAMRITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVD 213 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + L +L GEE+ + RIA AI + + + + K + + HPAT+ Sbjct: 214 DETLANVLYEFGEERHSRRIARAIKQMDSYD----STLALAEVIKVAHPNWQRGKHPATQ 269 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMA 271 SFQA+RIF+NNE+ ++ L + LK GG L V+SFHSLEDR +K+F S G+ Sbjct: 270 SFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPE 329 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ P F + V P++ +++ N RSRSA LR RT + D Sbjct: 330 DENLPMPPKRPRYFSKPKR--VGPSKAEISHNPRSRSAWLRMATRTDADYVAD 380 >gi|57167704|ref|ZP_00366844.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228] gi|57020826|gb|EAL57490.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228] Length = 311 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 91/301 (30%), Positives = 144/301 (47%), Gaps = 9/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVLL +V LD T G GG+S S K +IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+K++ + FSQ+ D + + G++ D+GVSS Q+D RGF+ Sbjct: 64 RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSDFLD 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 ISA +++N + L+ I GE IA I + RQ ++ ++L Sbjct: 124 MRMNQDVKISAFELINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I KT ++ AT FQA+RI VN E+E L L EK +L ++ FHSL Sbjct: 184 IIGKTKQNHRSVSK--ATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK +F + + + ++ + I KK + P++E++ N RS AK+ Sbjct: 242 EDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIINKKAITPSKEEIMINSRSSCAKM 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|293363236|ref|ZP_06610120.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2] gi|292553095|gb|EFF41844.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2] Length = 302 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 158/305 (51%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G GG+S + + +IA D+D +A+ Q Sbjct: 5 HYSVLLEETIKSLNLQPDGIYVDLTLGMGGHSAKILEKLNKNGMLIAFDKDDYALEISQR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++F L ++ +SQL+ VDG++ DLG+SS QID +RGFS+ K L Sbjct: 65 RLSSISDKFILIKSDYSQLKSQLANHNIYKVDGIIADLGISSPQIDNANRGFSYNKDAKL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S A VVN +V+ L I + K AS++A AI ++ P +T L Sbjct: 125 DMRMDTSQELDAEIVVNTYSVEHLRDIFLKYADVKHASQVAKAI---EKNRPIVSTMQLV 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + +PA FQALRI VNNE+ L L A LK L +++FHS Sbjct: 182 EVIKSAYPAALLRAKNPAKAVFQALRIEVNNELYSLKTMLDDAVSLLKTNASLSIITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDRLVK FAS + + + I A F S K V P+ ++ N+RSRSAKLR Sbjct: 242 IEDRLVKHKFASLTASKIPAKMPI---ADKKTFLS---KQVKPSSNEIQENKRSRSAKLR 295 Query: 313 AGMRT 317 + Sbjct: 296 ILTKI 300 >gi|157164915|ref|YP_001466663.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826] gi|112800495|gb|EAT97839.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826] Length = 334 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+ VLL++V++ +D T G G+S + N+ IA D+D A++ Sbjct: 29 QSPHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINFS 87 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + ++++ FS+L + + ++ D+GVSS+QID DRGF S Sbjct: 88 LKKLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSSA 147 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 G SA DVVN + +L RI GE K AS IA+ I+ R + ++L Sbjct: 148 LDMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKEL 207 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++I + K + PA +FQA+RI VN E++EL L S EK L+ +++FH Sbjct: 208 ANIIG--IAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFH 265 Query: 252 SLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+ F + + + + + + +TKK + +Q ++A N RS+SA Sbjct: 266 SLEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKSA 325 Query: 310 KLRAGMRTV 318 KLR + Sbjct: 326 KLRVF-KIK 333 >gi|78188031|ref|YP_378369.1| methyltransferase [Chlorobium chlorochromatii CaD3] gi|88909192|sp|Q3ANW1|RSMH_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78170230|gb|ABB27326.1| methyltransferase [Chlorobium chlorochromatii CaD3] Length = 328 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 98/323 (30%), Positives = 168/323 (52%), Gaps = 20/323 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIAL 64 + H PVL +V+A L + +D T G G +S + + +I + Sbjct: 1 MALHDTYHDPVLAAEVVATL-VQRSGIYVDGTLGGGSHSLALLQALQAQGLLESSLLIGI 59 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSM 116 D+D A++ E ++ ++ L + F + V V GV+ DLGVSS Sbjct: 60 DQDSDALAMAAERLQAWQPYTRLLKGNFRDMASLVQQLCDAEGRACAVTGVLLDLGVSSF 119 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH- 174 Q+D +RGFS+ +SGPLDMRM + ++A++++N A+ +L RI GEE ++ +A Sbjct: 120 QLDTAERGFSYMRSGPLDMRMDNTAPLTAAELINHADEAELARIFYHYGEEPRSRALARA 179 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + +R + F TT++L++L+++ + + I +R FQALRI VN+E+ L + L Sbjct: 180 VVQQREKMGNFTTTEELAALVRRLTHGGEKAVIKTLSRLFQALRIAVNDELGALHEVLEG 239 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVV 293 A + L G L V+S+HSLEDR+VK FF + + + + +TK+ + Sbjct: 240 ALELLDGNGRLAVMSYHSLEDRVVKHFFTHHAQCDWGPKGVALREPLSQGALTIVTKRPM 299 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + + +++ N R+RSAKLR + Sbjct: 300 LASADEIERNPRARSAKLRVAAK 322 >gi|282862166|ref|ZP_06271229.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE] gi|282563191|gb|EFB68730.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE] Length = 312 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 176/310 (56%), Gaps = 15/310 (4%) Query: 24 LLEKVIALLNP-------APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 +L++ + LL P P V++D T G GG+S + +IALDRD A+ Sbjct: 1 MLQRCLDLLAPALEATGPRPP-VVVDCTLGLGGHSEALLSAFPEARLIALDRDKEALRLS 59 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y ++ +L A + +L + + V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 60 GERLAAYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDA 119 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GI A++V+N +L RIL GEEKQA RI A+V+ R+ PF + Sbjct: 120 PLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSNSAR 179 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ + K +PA R+FQALRI VN E+ L + + +A ++L GG + V+S Sbjct: 180 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRSLAVGGRIAVLS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ A+ + + + + +T+ +PT+E+VA NRR+ A Sbjct: 240 YHSLEDRLVKQVLAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRAAPA 299 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 300 RLRGAERIRE 309 >gi|292616071|ref|XP_689063.3| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 2 [Danio rerio] gi|292616073|ref|XP_002662882.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Danio rerio] Length = 402 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 121/335 (36%), Positives = 174/335 (51%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PV++++V+ LN PG+++LD TFGAGG+S++ + V+A DRDP A Q+ Sbjct: 67 HTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQL 126 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +Y+ + FS+L + +P VD + D G SSMQ+D +RGFS K GP Sbjct: 127 AEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGP 186 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A+DVVN + + L +L GEE+ +IA AI + R P T Sbjct: 187 LDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRT 246 Query: 189 QDLSSLIQKTVY----FSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 L+S++ +++ +R H AT++FQALRIFVN+E+ EL GLR A+ L+ Sbjct: 247 LQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLR 306 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----------- 289 G L V++FHSLEDRL K+F R + Q Sbjct: 307 PKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGG 366 Query: 290 --------KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 KKV+ P++E+V N R+RSAKLR +R Sbjct: 367 NSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVR 401 >gi|72161506|ref|YP_289163.1| methyltransferase [Thermobifida fusca YX] gi|88909224|sp|Q47QX7|RSMH_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71915238|gb|AAZ55140.1| bacterial methyltransferase [Thermobifida fusca YX] Length = 330 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 168/295 (56%), Gaps = 10/295 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+LE+V+ LL P PG + +D T G GG++ + + ++ +DRD A+ Sbjct: 20 HVPVMLERVVELLAPALQQPGAIAVDGTLGLGGHAEALLRAHPGLRLVGVDRDTTALERA 79 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + Y ++ L A +S + + + V G++FDLGVSS Q+D +RGF++ Sbjct: 80 RQRLAPYADRIDLVHAVYSDIPRILDELGIDRVHGLLFDLGVSSPQLDEAERGFAYSYDA 139 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A+D+VN +LTRI + GEE+ A+RIA AIV++R P +TT Sbjct: 140 PLDMRMDRTQERTAADIVNTYPASELTRIFRVYGEERFAARIAQAIVRQRAKEPVRTTGV 199 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ + ++ + HPA R+FQALRI VN+E+ L + L +A L G ++V+S Sbjct: 200 LADLVRSAIPAAARRSGGHPAKRAFQALRIEVNSELSILERALPAALSRLAVAGRIVVLS 259 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +HSLEDR+ K+ S +P + +T+ +PT+++ A N Sbjct: 260 YHSLEDRITKRVLTELSTDSTPPGLPVPLPDRQPELRLLTRGAELPTEQETAANP 314 >gi|296166032|ref|ZP_06848481.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898597|gb|EFG78154.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 334 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL + + LL PA G V+LDAT GAGG++ F +I LDRDP Sbjct: 10 HVPVLLGRCVELLTPALTRHDADGSGAVLLDATLGAGGHAERFLTDLPGLRLIGLDRDPN 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L Y + VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEITRARLARFADRITLVHTRYDGLAAALAESGYGAIESVDGMLFDLGVSSMQLDRAER 129 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM +A+D++N + L IL GEE+ A RIA +V+RR Sbjct: 130 GFAYAQDAPLDMRMDPESPLTAADILNTYDEAALADILHRYGEERFARRIAAQVVRRRAR 189 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 APF +T DL +L+ + + + HPA R+FQALRI VN+E+ L + AL Sbjct: 190 APFASTADLVALLYQAIPAPARRTGGHPAKRTFQALRIAVNDELNSLRAATPAGLDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA+ V + H F+S+T ++V Sbjct: 250 GGRMVVLAYQSLEDRIVKRLFAAAVASRTPVDLPVELPGHEPRFRSLTHGAERADADEVE 309 Query: 302 FNRRSRSAKLRAGMRTVERSIEDDS 326 N RS + +LRA R + + + D+ Sbjct: 310 RNPRSAAVRLRAVQRVQQSTGKADA 334 >gi|126332528|ref|XP_001380257.1| PREDICTED: similar to methyltransferase 5 domain containing 1, [Monodelphis domestica] Length = 442 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 134/341 (39%), Positives = 188/341 (55%), Gaps = 38/341 (11%) Query: 14 HHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H T+ H+PV++ +VI L P G+ ILD TFG+GG+SR+ + + + LDRDP A Sbjct: 101 HETMKKLHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELDVTLYVLDRDPTA 160 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGF 125 + Q+ Y +Q + FSQ + + VDGV+ DLG SSMQ+D +RGF Sbjct: 161 YAIAQQLSELYPKQIRALLSQFSQAEAMLMKAGVQPGTVDGVLLDLGCSSMQLDTPERGF 220 Query: 126 SFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 SF+K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 221 SFRKDGPLDMRMDGGRYPDMHTAADVVNALDQQALALILRTYGEEKYAKKIASAIVQARS 280 Query: 182 SAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLR 233 P TQ L+S++ + H AT++FQALRIFVNNE+ EL GL+ Sbjct: 281 IYPITRTQQLASIVAGAFPTAALYERKDLLQRSTHIATKTFQALRIFVNNELNELYVGLK 340 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF------------------ASRSGKVMAVRHM 275 +A+K L+ GG L+ +SFHSLEDR+VK+F ++S + Sbjct: 341 TAQKFLRPGGRLVALSFHSLEDRIVKRFLHGIDVTEKLSPKKRQKIIQAQSLCLNQENEE 400 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ P ++ I KKVV P ++V N R RSAKLRA ++ Sbjct: 401 FFRSSSPLEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAIK 441 >gi|296454440|ref|YP_003661583.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum JDM301] gi|296183871|gb|ADH00753.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum JDM301] Length = 359 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 159/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H+PVLL+ + L+ PA + D T G G+S +F K +I +DRD Sbjct: 1 MVDVANIHLPVLLDDCVNLMVPALEHENAIAADCTLGLAGHSIAFLKAAPQARLIGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A+ E M ++F A F QL + D+ VD V DLG+SS+QID D Sbjct: 61 SEALGLATERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A ++ + +L RI GEE+ + +IA AIV RR Sbjct: 121 RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT L+ L+ + V + +PA R FQALRI VN E+++LA L A L Sbjct: 181 KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLED+ VK F A + + F +T+ + + ++A Sbjct: 241 GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKAGEHEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 ANPRSASVRLRAVE 314 >gi|294101810|ref|YP_003553668.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM 12261] gi|293616790|gb|ADE56944.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM 12261] Length = 300 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 180/312 (57%), Gaps = 26/312 (8%) Query: 17 IGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 + +H+PV+L++VI L N ++I+DAT G GGY+ + ++ +DRD A+S Sbjct: 1 MVEHIPVMLKEVIESLKNVESPQMIVDATLGLGGYAEEILNVFPATLLVGIDRDEQAISL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY--VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Q+ + + E+ ++ + FS + + DG+VFDLGVS++Q+ +RGFSFQ G Sbjct: 61 AQKRLVSFAERVHIYNSPFSAIAMVLSKENAEPDGIVFDLGVSNLQLSSPERGFSFQNDG 120 Query: 132 PLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQ 186 PLDMRM SG SA+ +VN + K+L I GEE+ + RIA IV+ R ++ P Q Sbjct: 121 PLDMRMEGTSGESGYSAAQIVNTFSEKELADIFWKYGEERYSRRIATGIVRFREKNGPIQ 180 Query: 187 TTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L I+ ++ + HPA + FQALRIFVN+E++EL +GL+ A ++L GG+ Sbjct: 181 RTFQLVEAIRSSLPAPVQRKMGGHPARKVFQALRIFVNDELQELEKGLQGALESLAPGGV 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++VVS+HSLEDR+VK +T++ + P++E+V N Sbjct: 241 IVVVSYHSLEDRIVKYAMKDWKTSD--------------HGDLLTRRPLKPSEEEVEKNY 286 Query: 305 RSRSAKLRAGMR 316 ++RSAKLRA + Sbjct: 287 KARSAKLRAFRK 298 >gi|296125293|ref|YP_003632545.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563] gi|296017109|gb|ADG70346.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563] Length = 311 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 170/311 (54%), Gaps = 17/311 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M + I I H PV+L++V++ + P K+++DAT G GG++++ + V + +RD Sbjct: 10 MDNDIELNIV-HTPVMLKEVLSYI-PENAKIVIDATLGEGGHTKAMLDLNLEVHSFERDS 67 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGF 125 + + ++DY F + T+ ++ + + +K D +++DLGVS +RGF Sbjct: 68 TILDIAKRRLKDYPN-FHYYNNTYDKMMECLDEKVIGNADFMLYDLGVSLFHFKKAERGF 126 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF+ + LDMR+ + SA DV+N + ++L R+ GE A ++A IVK R Sbjct: 127 SFKDNTMLDMRLGINEKSAYDVINGYSEEELERVFRDYGELSNARKMARIIVKERDKRKI 186 Query: 186 QTTQDLSS-LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+++L S + T + +IHPAT FQA+RI VN+E+ L + + + LK G+ Sbjct: 187 ETSKELESIIFHNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSILNIPNILKNNGV 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++S+HSLEDR+VK+FF +F+ + KV +PT +++ N Sbjct: 247 AVIISYHSLEDRIVKRFFKENEKTK----------NKDGIFKLLNNKVKLPTNDEIKSNP 296 Query: 305 RSRSAKLRAGM 315 SRSAK+RA Sbjct: 297 ASRSAKMRAVQ 307 >gi|291320327|ref|YP_003515589.1| S adenosyl methyltransferase [Mycoplasma agalactiae] gi|290752660|emb|CBH40633.1| S adenosyl methyltransferase [Mycoplasma agalactiae] Length = 300 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 15/307 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+P+LL + I LN + LD T G GG+S K N ++ D+D FA+ Sbjct: 1 MENKHIPILLNEAIESLNIKSNGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEE 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + F L + F+ + D + + DG++ DLG+SS Q+D +RGFS+ K Sbjct: 61 SRKRLSKIGSNFQLIHSDFNNVADELAKLNISAVDGILVDLGISSPQVDNAERGFSYSKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ + A VVN + +L I E K A ++A+AI+K+R P TT Sbjct: 121 ARLDMRMNTNQALDAHFVVNNYSEDELITIFYNYAEVKLAKQVANAIIKKR---PINTTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ +I+ + +P FQA+RI VNNE + L A LK L +++ Sbjct: 178 ELAEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIIT 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED ++KKFF + M + + KV P++ +++ N RSRSA Sbjct: 238 FHSLEDSIIKKFFGNLIKSK-HPSKMPINEE-----KKYIVKVYSPSKAEISENNRSRSA 291 Query: 310 KLRAGMR 316 KLR + Sbjct: 292 KLRVLTK 298 >gi|289704963|ref|ZP_06501378.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58] gi|289558299|gb|EFD51575.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58] Length = 349 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 171/313 (54%), Gaps = 15/313 (4%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 H+PV+ ++V+ LL PA V +D T G GG++ + ++ I +DRD Sbjct: 30 HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDVH 89 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + ++ F T+ ++ + + VD ++DLGVSS Q+D +RGF+ Sbjct: 90 AQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 149 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + SA+ +V + + ++L RI+ GEE+ A IA AIV+ R AP Sbjct: 150 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARDEAPI 209 Query: 186 QTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ V + HPA R+FQALRI VN E++ L + + AL GG Sbjct: 210 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 269 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+S+HSLEDR+ K+ ++ + + H V + +T+ PT+E+++ NR Sbjct: 270 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 329 Query: 305 RSRSAKLRAGMRT 317 R+ SAK+RA + Sbjct: 330 RASSAKVRAVEKI 342 >gi|332295500|ref|YP_004437423.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium narugense DSM 14796] gi|332178603|gb|AEE14292.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 171/311 (54%), Gaps = 26/311 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 +++ H+PVLL +V+ N APGKV++D T GAGG+S +F K G ++ D+D A Sbjct: 3 NYSKDIHIPVLLNEVLENSNLAPGKVVVDGTIGAGGHSFNFLKKILPGGFLLGFDKDIEA 62 Query: 71 VSCGQETMRD--YKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 V E + + F++F F +++P D DLG+S+MQI +RGF Sbjct: 63 VKLAVEKLSSTFDRNSFTIFNDKFENFVKYLNFLPYGKFDLFFLDLGLSTMQIKESNRGF 122 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K LDMRM ++ASD +N A+ +++ + GEE ++ ++A I RR+ P Sbjct: 123 SFMKDEKLDMRMDLKEKMTASDWLNSASEEEMEEVFRKYGEEPKSRKLAKMISLRRREKP 182 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F++T DL+ L++K + + HPATR FQA+RI +N+EIE L LR A + + G Sbjct: 183 FESTMDLAQLVKKIYPYGRR---HPATRIFQAIRIVINDEIEHLEATLREATNHINSLGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +IV+SFHS EDR+VK F + + + ITKK ++ ++ + N Sbjct: 240 IIVISFHSGEDRVVKWTFKNLEKEG--------------RGRVITKKPIIASESETKENP 285 Query: 305 RSRSAKLRAGM 315 +RSAK+R Sbjct: 286 SARSAKMRVWE 296 >gi|326315562|ref|YP_004233234.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372398|gb|ADX44667.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae ATCC 19860] Length = 311 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 159/304 (52%), Gaps = 15/304 (4%) Query: 26 EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78 ++ + L P+P V +DATFG GG+SR + ++A D+DP A+ Sbjct: 15 DEAVDALLGGAGPSPAGVWIDATFGRGGHSRRILERLGPQGRLVAFDKDPEAIQEAARI- 73 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +FS+ F L + ++ G++ DLGVSS QID RGFSF+ GPLDMRM Sbjct: 74 --TDARFSIRHEGFRHLAELP-ERSAAGILMDLGVSSPQIDSPGRGFSFRFDGPLDMRMD 130 Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G S +D + A+V + ++ GEE+ A IA AI RR T + + Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 ++ +PATR+FQALRIF+N E+EEL L ++ + L GG L V+SFHSLEDR+ Sbjct: 191 GAVKTREAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+F A S +V R + P +++ + + P +V N R+RSA +R RT Sbjct: 251 VKQFIAQHSKEV-YDRRAPFAAPQPMRLKALDR--IKPGASEVEANPRARSAVMRVAERT 307 Query: 318 VERS 321 + Sbjct: 308 ELPA 311 >gi|310287093|ref|YP_003938351.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17] gi|309251029|gb|ADO52777.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17] Length = 370 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 158/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + H PVLLE+ ++L+ PA PG + +D T G G++ +F K V+ +DRD Sbjct: 1 MTDYASIHQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGD 122 A++ E + ++F A F + D+ V+ V DLG+SS+QID D Sbjct: 61 AEALAMATERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETD 120 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM S +A V+ + ++L RI GEE+ + +IA IV+RR Sbjct: 121 RGFSYAHDAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRA 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + V + +PA R FQALRI VN E+++LA L L Sbjct: 181 QEPLTTSAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L+V S+HSLED+ VK F + + F +T+ V +++A Sbjct: 241 NGRLVVESYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQSGPDEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LR Sbjct: 301 ANPRSASVRLRGVE 314 >gi|163854995|ref|YP_001629293.1| S-adenosyl-methyltransferase MraW [Bordetella petrii DSM 12804] gi|263445873|sp|A9I4S5|RSMH_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163258723|emb|CAP41022.1| methyltransferase [Bordetella petrii] Length = 363 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 117/347 (33%), Positives = 181/347 (52%), Gaps = 35/347 (10%) Query: 16 TIGDHVPVLLEKVIALL---------NPAPG-------------KVILDATFGAGGYSRS 53 +H PVLL + L G V +D TFG GG+SR Sbjct: 1 MEFEHRPVLLAPTVDALLLADFAGKGAARSGRQDGAQADARAQRGVFVDGTFGRGGHSRE 60 Query: 54 FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGV 107 + ++ D+DP A++ E + + ++ F+ +++ + +DGV Sbjct: 61 LLRRLGPEARLVVFDKDPQAIAVANE-LAAGDARVTVVHGGFAAMREELAARGIESIDGV 119 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS Q+D RGFSF + GPLDMRM G + +D + QA+V ++ ++ GEE Sbjct: 120 MLDLGVSSPQLDDAGRGFSFMREGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A ++A AI RR + P +TT +L+ + V + HPATR+FQALRI++N E+E Sbjct: 180 RFAFQVAKAIAARRATRPLRTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284 EL++ L SA + L GG L V+SFHSLEDR+VK+ A+ + +A + S + Sbjct: 239 ELSRALASALELLAPGGRLAVISFHSLEDRMVKQCIAAAARPAVAHARLPLRESELPQPL 298 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331 ++S+ + V E++A N R+RSA LR RT E D + +P Sbjct: 299 YRSLGR--VQADDEEIAGNARARSAVLRVAERTTEPLGADGAAAFVP 343 >gi|148377639|ref|YP_001256515.1| S-adenosyl-methyltransferase [Mycoplasma agalactiae PG2] gi|263456537|sp|A5IYG2|RSMH_MYCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148291685|emb|CAL59071.1| S adenosyl methyltransferase [Mycoplasma agalactiae PG2] Length = 300 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 99/307 (32%), Positives = 152/307 (49%), Gaps = 15/307 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+P+LL + I LN + LD T G GG+S K N ++ D+D FA+ Sbjct: 1 MENKHIPILLNEAIKSLNIKSDGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEE 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + F L + F+ + D + VDG++ DLG+SS Q+D +RGFS+ K Sbjct: 61 SRKRLSKIGSNFQLIHSDFNNVADELAKLNINAVDGILVDLGISSPQVDNAERGFSYSKD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ + A VVN + +L I E K A ++A+AI ++ P TT Sbjct: 121 ARLDMRMNTNQALDAHFVVNTYSEDELITIFYNYAEVKLAKQVANAI---IKNRPINTTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ +I+ + +P FQA+RI VNNE + L A LK L +++ Sbjct: 178 ELAEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIIT 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED ++KKFF + + I + KV P++ +++ N RSRSA Sbjct: 238 FHSLEDSIIKKFFGNLIKSKHPSKMPIKEE------KKYIVKVYSPSKAEISENNRSRSA 291 Query: 310 KLRAGMR 316 KLR + Sbjct: 292 KLRVLTK 298 >gi|311085963|gb|ADP66045.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 302 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 116/305 (38%), Positives = 181/305 (59%), Gaps = 19/305 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 + +++I L + +D+TFG GG+S K + ++DRDP A S G + Sbjct: 1 MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKIK-- 58 Query: 81 YKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS+L D+ ++ + +G++FDLGVSS+QID RGFSF+ GPLDMR Sbjct: 59 -DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117 Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M GISAS+ + ++N+K+++ +L GEE+ + +IA+AI +R Q +T +L+++I Sbjct: 118 MNPNYGISASEWLFESNIKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++SFHSLED Sbjct: 178 KKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 RLVKKF S K + M + + I + ++PTQ ++ N R+RS+ Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294 Query: 311 LRAGM 315 LR Sbjct: 295 LRIAE 299 >gi|148695830|gb|EDL27777.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus musculus] gi|148695831|gb|EDL27778.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus musculus] Length = 339 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 134/334 (40%), Positives = 184/334 (55%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + + V ALDRDP A + ++ Sbjct: 5 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + +DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 65 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 124 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 125 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 184 Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S+ VY K H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 185 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 244 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH-----P 282 GG L+ +SFHSLEDR+VK+F + + + + P Sbjct: 245 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 304 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 305 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 338 >gi|27229243|ref|NP_084066.2| probable methyltransferase-like protein 15 [Mus musculus] gi|81906157|sp|Q9DCL4|MET15_MOUSE RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|26362646|dbj|BAB22281.2| unnamed protein product [Mus musculus] gi|109730967|gb|AAI17550.1| Methyltransferase 5 domain containing 1 [Mus musculus] gi|109732458|gb|AAI15927.1| Methyltransferase 5 domain containing 1 [Mus musculus] gi|123225263|emb|CAM17438.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231531|emb|CAM24681.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231533|emb|CAM25317.1| methyltransferase 5 domain containing 1 [Mus musculus] Length = 406 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 134/334 (40%), Positives = 184/334 (55%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + + V ALDRDP A + ++ Sbjct: 72 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + +DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S+ VY K H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH-----P 282 GG L+ +SFHSLEDR+VK+F + + + + P Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405 >gi|305433210|ref|ZP_07402366.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20] gi|304443911|gb|EFM36568.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20] Length = 311 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 9/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVLL +V LD T G GG+S S K +IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+K++ + FSQ+ D + + G++ D+GVSS Q+D RGF+ Sbjct: 64 RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSDFLD 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 + ISA +++N + L+ I GE IA I + RQ ++ ++L Sbjct: 124 MRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I KT ++ AT FQA+RI VN E+E L L EK +L ++ FHSL Sbjct: 184 IIGKTKQNHRSVSK--ATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK +F + + + ++ + I+KK + P++E++ N RS AK+ Sbjct: 242 EDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIISKKAITPSKEEIMINSRSSCAKM 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|311086539|gb|ADP66620.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 302 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 19/305 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 + +++I L + +D+TFG GG+S K + ++DRDP A S G + Sbjct: 1 MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKIK-- 58 Query: 81 YKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS+L D+ ++ + +G++FDLGVSS+QID RGFSF+ GPLDMR Sbjct: 59 -DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117 Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T +L+++I Sbjct: 118 MNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++SFHSLED Sbjct: 178 KKTI-PTKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 RLVKKF S K + M + + I + ++PTQ ++ N R+RS+ Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294 Query: 311 LRAGM 315 LR Sbjct: 295 LRIAE 299 >gi|294155677|ref|YP_003560061.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145] gi|291600063|gb|ADE19559.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145] Length = 300 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 154/303 (50%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL + I LN P + +D T G GG+S + +IA D+D +A+ Q+ Sbjct: 5 HYSVLLNETIDSLNIKPDGIYIDLTLGMGGHSTKILEKLKSGLLIAFDKDKYALEISQKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++F L + +S+L+ + VDG++ DLG+SS Q+D +RGFS+ K LD Sbjct: 65 LSQISDKFILVNSDYSKLKSELFKLNINKVDGIIADLGISSPQVDDANRGFSYNKDARLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + I A +VN + + L I + K A ++A I ++ P T +L Sbjct: 125 MRMDTNQEIDAHYIVNNYSCEQLVDIFLKYADVKLAKQVAKVI---EKNRPINNTLELVE 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ + +PA FQALRI VNNE++ L L A + LK L +++FHS+ Sbjct: 182 IIKSAYPAAILRAKNPAKAVFQALRIEVNNELDSLKTMLDDAIELLKENSSLSIITFHSI 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F M + I + + K + P+ +++ N+RSRSAKLR Sbjct: 242 EDRLVKHKFTELCSSKMPAKMPI------NEIKYFSTKQIKPSAKELLENKRSRSAKLRI 295 Query: 314 GMR 316 + Sbjct: 296 LTK 298 >gi|325123733|gb|ADY83256.1| S-adenosylmethionine methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 285 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 15/289 (5%) Query: 40 ILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +DATFG GG++R + V A D+DP A+ + +F++ A+F+ ++ Sbjct: 2 YIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVASA-LAQEDPRFTIIHASFADIK 60 Query: 97 DYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152 + + + VDG++ DLGVSS Q+D +RGFSF + GPLDMRM G++A++ + + Sbjct: 61 EKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEIE 120 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + L I+ GEE+ + RIA AI + TT L+ L++ + ++ HPATR Sbjct: 121 EEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQLAELVKTAHPKWEKHK-HPATR 176 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 +FQA+RI +N E++++ L A LK G L V+SFHSLEDRL+K+F S + Sbjct: 177 TFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDI 236 Query: 273 RHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +P + I++ V ++E+V N RSRSA LR R ++ Sbjct: 237 GWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 283 >gi|262831581|sp|Q1Q846|RSMH_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 342 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 31/339 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRS 53 + H VLL++ +A + + + +DATFG GG+SR Sbjct: 8 QATSDELSFVHDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRL 67 Query: 54 FCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGV 107 ++ +I D+DP A+S +E + + + + +F+ L D + VDG+ Sbjct: 68 LLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLTDSLAAMRITQVDGL 126 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLG+SS QID G RGFSF + G +DMRM G S ++ + + + L +L GEE Sbjct: 127 MADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDETLANVLYEFGEE 186 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + + RIA AI + + + + K + + HPAT+SFQA+RIF+NNE+ Sbjct: 187 RHSRRIARAIKQMDSYD----STLALAEVIKVAHPNWQRGKHPATQSFQAMRIFINNELG 242 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVF 285 ++ L + LK GG L V+SFHSLEDR +K+F S G+ ++ P F Sbjct: 243 DVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLPMPPKRPRYF 302 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324 + V P++ +++ N RSRSA LR RT + D Sbjct: 303 SKPKR--VGPSKAEISHNPRSRSAWLRMATRTDADYVAD 339 >gi|237752673|ref|ZP_04583153.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC BAA-430] gi|229376162|gb|EEO26253.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC BAA-430] Length = 311 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 166/307 (54%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLLE+V+ +++D T G GG++ + + N+ I +D+D A++ + Sbjct: 4 PHIPVLLEQVLDSFKTLKSGILIDCTLGFGGHTHALLEAYPNLEIIGIDQDSDALAFTAK 63 Query: 77 TMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + E+FS + +S L + + + G++ D+GVSSMQ D +RGF F Sbjct: 64 RLSVFGERFSYKKGRYSAVVRELLSNKALQENIVGILADIGVSSMQFDNKERGFCFDSYM 123 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 +SA ++VN A++ +L RI GE ++ ++A IV+ R++A F + + L Sbjct: 124 LDMRMDREQHLSAKEIVNGASLNELERIFRDFGEIREYKKLARLIVEERKNAKFTSAKHL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLIVVSF 250 S LI K K+ +IHPAT++FQALRI VN+E+ EL + L++ E LK G + V++F Sbjct: 184 SELIAK---HFKHPKIHPATQAFQALRIAVNDELGELERLLQTLGENPLKKGARVSVITF 240 Query: 251 HSLEDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K+ F + + +S+ KK + + ++ N RSRS Sbjct: 241 HSLEDRITKQTFREWERDCICDCNIMRCICGGGHSKGKSLYKKPLCADESELRENPRSRS 300 Query: 309 AKLRAGM 315 AKLR+ Sbjct: 301 AKLRSFE 307 >gi|28373611|pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah gi|28373612|pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah gi|28373847|pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sam gi|28373848|pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sam Length = 301 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 174/311 (55%), Gaps = 27/311 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H+PV + +VI L P K+ILD T G GG+SR+ + G +I +D D + Sbjct: 7 SQRHIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIA 66 Query: 75 QETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E ++++ ++ SLF+ ++ + L + + VDG++ DLGVS+ Q+ +RGF+F++ Sbjct: 67 EEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREE 126 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLD R +A V+N+ ++L RI+ GEEK+ +R K ++ P TT D Sbjct: 127 PLDXRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFAR--RIARKIVENRPLNTTLD 184 Query: 191 LSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +++ + + + H AT++FQA+RI+VN E+E L + L+ AE L GG ++V+ Sbjct: 185 LVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+ F + + +T+K V P++E++ N R+RS Sbjct: 245 SFHSLEDRIVKETFRNS-----------------KKLRILTEKPVRPSEEEIRENPRARS 287 Query: 309 AKLRAGMRTVE 319 +LRA R E Sbjct: 288 GRLRAAERIEE 298 >gi|325971088|ref|YP_004247279.1| ribosomal RNA small subunit methyltransferase H [Spirochaeta sp. Buddy] gi|324026326|gb|ADY13085.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta sp. Buddy] Length = 296 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 18/303 (5%) Query: 20 HVPVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 H V+ ++V+ L G ++D T G GG++ F VI LDRD Sbjct: 5 HYSVMAQEVLQYLVVPEGREATMVDCTCGEGGHTHLFLSTHPNLKVIGLDRDTTIQQKAI 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E M+++ +F F+ + D ++FDLG+SS + RGFSF+K LDM Sbjct: 65 ERMKEFGSRFEPKNIWFNDFFAQGEENVYDLILFDLGISSFHYEESHRGFSFRKDEVLDM 124 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R+ S ISA DVVN + L ++ GEE+ + RIA +IV+RR+ A T+++L+S+ Sbjct: 125 RLDESASISAFDVVNGYQEERLADVIFNFGEERYSRRIARSIVERRKLAKISTSEELASI 184 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I K V + IHPATR+FQA+RI VN E++ + L+ A KALK+GG + V+SFHSL Sbjct: 185 IYKAVPPNYRYGHIHPATRTFQAIRIEVNRELDRIEPALKGAVKALKSGGRIAVISFHSL 244 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F + + +TKK ++PT ++ N SRSAKLR Sbjct: 245 EDRQVKWLFKGMA------------EGDEPAIRILTKKPLIPTDQEREENAASRSAKLRI 292 Query: 314 GMR 316 + Sbjct: 293 IEK 295 >gi|302338060|ref|YP_003803266.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM 11293] gi|301635245|gb|ADK80672.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM 11293] Length = 320 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 173/320 (54%), Gaps = 10/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKM--GSNVIALD 65 M+ + H V+ E+ L+PA +++D T G GG+S F G ++ LD Sbjct: 1 MTGTFMDIV--HRSVMAEEAFHYLSPALEKGLLVDCTLGEGGHSELFLSRLPGCRIVGLD 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDR 123 D + ++ + + E+ LF F+ P D+ D V+FDLG+S + R Sbjct: 59 ADEKILEVARQRLAPFGERVRLFNTWFNVFFRDYPLGDERPDAVLFDLGISVFHYERSGR 118 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF++ PLDMR+ SA+D++N K+L ++ GEE+ + R A AIV RRQS Sbjct: 119 GFSFREDEPLDMRLEAHLEQSAADIINTYPEKELADLIFRFGEERLSRRFASAIVARRQS 178 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT++L +I ++ RIHPATR+FQALRI VN E+ L L A L+ Sbjct: 179 KPFTTTKELEEVIWTASPQSYRHGRIHPATRTFQALRIAVNGELARLESALGDAFARLRP 238 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG++ V+SFHSLEDR+VK FF + ++ I S+ + +TKK + PT+E+V Sbjct: 239 GGMMGVISFHSLEDRIVKHFFLDKKKGCISSSGAPIDSDRGVTAAEILTKKPLRPTEEEV 298 Query: 301 AFNRRSRSAKLRAGMRTVER 320 N SRSAK R + ++ Sbjct: 299 RVNAPSRSAKFRVVRKLIDE 318 >gi|187735156|ref|YP_001877268.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC BAA-835] gi|187425208|gb|ACD04487.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC BAA-835] Length = 520 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VLL + + +L PGK I+D T G GG++ + G+ V +DRD A + Sbjct: 219 HITVLLHETVDMLKAGPGKFIVDCTLGGGGHTELLLEQGATVWGIDRDADARRAAMLRLA 278 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +F + F ++ + + VDG++ DLGVSS Q+D RGFSF++ GPLDMR Sbjct: 279 RFGSRFKVLAGNFQDVESILSQQGVSRVDGLLADLGVSSHQLDTASRGFSFREDGPLDMR 338 Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SA ++VN+A +++ IL GEE+ + IA A+VK R AP TT L+ ++ Sbjct: 339 MDTRAALSARNLVNEAPEEEIANILWQFGEERASRAIARAMVKARAQAPITTTAQLARIV 398 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + R HP TR+FQALRI VN E++ L L S+ + L GG + V++FHSLED Sbjct: 399 ESVL--PRKGRQHPGTRTFQALRIAVNGELDALDALLDSSVRLLGQGGRMAVITFHSLED 456 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R VK+FF RS + P F+ +++K V +E+++ N RSRSAKLR Sbjct: 457 RRVKQFFDLRSRPEIDRPEWPAPRPNPDYCFRPLSRKPVTAGEEELSTNPRSRSAKLRGV 516 Query: 315 MRT 317 + Sbjct: 517 EKI 519 >gi|300933362|ref|ZP_07148618.1| S-adenosyl-methyltransferase MraW [Corynebacterium resistens DSM 45100] Length = 348 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 108/335 (32%), Positives = 180/335 (53%), Gaps = 25/335 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALL------NPAPG-KVILDATFGAGGYSRSFCKMGSN-- 60 + + T G HVPV+ ++++ L+ + AP VI+D T GAGG+S +F S+ Sbjct: 8 DATENATHG-HVPVMCDRMVELVGVGVTSDNAPSVPVIIDGTLGAGGHSEAFLSSFSDAI 66 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV-------------PDKGVDGV 107 VI LDRDP A+ E + + ++F ++ F + + + + G+ + Sbjct: 67 VIGLDRDPHALEEATERLAPFGDRFVPYRTRFDGITEAIEDLIALDRIPAEVRETGLSAL 126 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEE 166 FDLGVSSMQ+D +RGF+++ PLDMRM ++A++++N + DL RIL G+E Sbjct: 127 FFDLGVSSMQLDQAERGFAYRVDAPLDMRMDPRLSLTAAEILNTYSHGDLARILKTYGDE 186 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEI 225 + A +IA A+++ R+ PF T+ L L+ T+ ++ HPA R+FQALRI VN E+ Sbjct: 187 RFAGKIASAVLREREKEPFTTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNAEL 246 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L A GG+ + +S+ SLED++VK F+ + + F Sbjct: 247 EALENVLPLAASWTHVGGVNVYMSYQSLEDKIVKSAFSDLTTSQTPAGLPMELPGTEPEF 306 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 + IT++ T++++ N R+ ++RA R +R Sbjct: 307 EMITRRAEKATEKEIEENSRAAPVRVRAARRVSDR 341 >gi|224050409|ref|XP_002191093.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Taeniopygia guttata] Length = 443 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 131/335 (39%), Positives = 183/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV+LE+V+ L+P PG+ LD TFGAGG++ + + S+ V ALDRDP A Q+ Sbjct: 108 HIPVMLEEVVNCLSPQPGQRFLDMTFGAGGHTAALLERASDISVYALDRDPTAHRMAQQL 167 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y +Q FSQ + + +DGV+ D G SSMQ+D +RGFS QK GP Sbjct: 168 AQAYPKQLQPLLGRFSQSEALLISSGVEPGSLDGVLLDAGCSSMQLDTPERGFSLQKDGP 227 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A+DVVN + + L +L GEE+ A RIA AIV+ R P T Sbjct: 228 LDMRMDHDRCPAMATAADVVNALDQRALASVLSAYGEERHARRIAAAIVQARSIYPITRT 287 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + L+S++ S +H AT++FQ LRIFVN+E+ EL GL++AEK L+ Sbjct: 288 RQLASIVAGAFPASALYARKDLLQRPVHVATKTFQGLRIFVNDELHELLIGLKTAEKFLR 347 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRHMI------------PSNAH 281 GG L+ +SFHSLEDR++K+F G +R + P Sbjct: 348 PGGRLVALSFHSLEDRIIKRFLHGIDITEKYNLGSKQKIRQALKNASKGEDTQGSPCGKS 407 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + SI KKV+ P +D+ N R RSAKLRA ++ Sbjct: 408 NSKWISIQKKVLTPQAKDIQINPRGRSAKLRAAIK 442 >gi|283780728|ref|YP_003371483.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068] gi|283439181|gb|ADB17623.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068] Length = 318 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 169/338 (50%), Gaps = 41/338 (12%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 M S T ++ T HV V+ ++I L P+ G ++LD T GAGG++R + Sbjct: 1 MSDSSSPTDQASPATTQPIHVSVMPREIIEWLRPSAGSILLDGTLGAGGHTRLLAEAIDA 60 Query: 59 ---------------SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-- 101 V++ DRD A++ + ++ L A F +L + + Sbjct: 61 AENLAKSTGNTQFSPGYVLSSDRDEAALARAEVHLKGLP--VKLVHANFCELPSVLEELG 118 Query: 102 -KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRI 159 GV G V DLG+SS Q+ RGFSF +G LD+R +G A ++ + +++ I Sbjct: 119 VTGVQGCVLDLGLSSDQLADDARGFSFDATGELDLRFDTSTGDPAWKLLEKLREEEIANI 178 Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219 + GEE+ + RIA I ++R P +T +L+ ++++ V + +I PATR+FQALRI Sbjct: 179 IYQFGEERLSRRIARKICEQRIIKPIRTADELARIVRRCVPRG-DGKIDPATRTFQALRI 237 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 VN E++ L + L + L GG L ++SFHSLEDRLVK+ F S Sbjct: 238 AVNGELDALKKALEKIPECLAPGGRLAIISFHSLEDRLVKEAFRS--------------- 282 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++TKK + +++A N RSRSAKLR R Sbjct: 283 --DLRLNNLTKKPLTALDDELASNPRSRSAKLRVAERV 318 >gi|297268188|ref|XP_001088477.2| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 1 [Macaca mulatta] Length = 407 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 129/340 (37%), Positives = 186/340 (54%), Gaps = 39/340 (11%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAVLGQFSQAEALLTKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLDMRM +A+DVVN + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQPALASILRTYGEEKHARKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P TQ L+S+ +Y K H AT++FQALRIFVNNE+ EL GL++A Sbjct: 247 PITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTA 306 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281 +K L+ GG L+ +SFHSLEDR++K+F + K + + Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSGHENTEEV 366 Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 367 SMRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAVK 406 >gi|237802695|ref|YP_002887889.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis B/Jali20/OT] gi|231273929|emb|CAX10721.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 103/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L S+ + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSSFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|15604993|ref|NP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D/UW-3/CX] gi|76788994|ref|YP_328080.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis A/HAR-13] gi|237804617|ref|YP_002888771.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis B/TZ1A828/OT] gi|255311073|ref|ZP_05353643.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276] gi|255317374|ref|ZP_05358620.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276s] gi|20138894|sp|O84274|RSMH_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909193|sp|Q3KM90|RSMH_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3328685|gb|AAC67865.1| PBP2B Family methyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|76167524|gb|AAX50532.1| MraW [Chlamydia trachomatis A/HAR-13] gi|231272917|emb|CAX09828.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435788|gb|ADH17962.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9768] gi|296436713|gb|ADH18883.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11222] gi|296437648|gb|ADH19809.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11074] gi|297140147|gb|ADH96905.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9301] gi|297748402|gb|ADI50948.1| MraW [Chlamydia trachomatis D-EC] gi|297749282|gb|ADI51960.1| MraW [Chlamydia trachomatis D-LC] Length = 300 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|76779305|gb|AAI06187.1| Methyltransferase 5 domain containing 1 [Mus musculus] Length = 406 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 133/334 (39%), Positives = 183/334 (54%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + + V ALDRDP A + ++ Sbjct: 72 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + +DG++ DLG SMQ+D +RGFS +K GP Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCPSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S+ VY K H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH-----P 282 GG L+ +SFHSLEDR+VK+F + + + + P Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405 >gi|213647633|ref|ZP_03377686.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 293 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 109/288 (37%), Positives = 164/288 (56%), Gaps = 15/288 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIAHAIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 +SFHSLEDR+VK+F +S + + A + + + + Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQ---LKKLGGRELRA 283 >gi|169629085|ref|YP_001702734.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus ATCC 19977] gi|263456523|sp|B1MP29|RSMH_MYCA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169241052|emb|CAM62080.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus] Length = 331 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 117/319 (36%), Positives = 174/319 (54%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H+PV+L++ LL PA G V++DAT GAGG++ F M VI LDRD Sbjct: 10 HIPVMLDRCYELLAPALTADSTDGSGAVLVDATLGAGGHTEHFLTMLPGLTVIGLDRDTN 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + +F + L D Y VDGV+FDLGVSSMQ+D +R Sbjct: 70 ALDIARSRLAPFGTRFVGVHTRYDGLADALDGLGYRTTSSVDGVLFDLGVSSMQLDQAER 129 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ +A+D++N + +L+R+L GEE+ A RIA IV+RR + Sbjct: 130 GFAYSVDAPLDMRMNAQDELTAADILNTYSAVELSRVLSRFGEERFARRIADEIVRRRAN 189 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF + L L+ T+ ++ HPA R+FQALRI VN E+E LA + +A AL+ Sbjct: 190 EPFTRSGQLVELLYATIPAATRRTGGHPAKRTFQALRIAVNAELESLATAIPAAMAALRP 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+++ SLED++VK FA+ + + + F +IT+ E++ Sbjct: 250 GGRVAVMAYQSLEDKIVKAEFAAATASRSPIDLPVELPGDAPEFTAITRGAERANDEEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS +LRA R +R Sbjct: 310 VNPRSAPVRLRAVERVADR 328 >gi|332283258|ref|YP_004415169.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7] gi|330427211|gb|AEC18545.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7] Length = 357 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 117/344 (34%), Positives = 178/344 (51%), Gaps = 32/344 (9%) Query: 20 HVPVLLEKVIALLNP------------------APGKVILDATFGAGGYSRSFCKMGS-- 59 H PVLLE + L V +D TFG GG+SR S Sbjct: 5 HRPVLLEPTVNALVDPGFGVKGKRSQMRDDSQALADGVFVDGTFGRGGHSRLLLSRLSPD 64 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSS 115 ++ D+DP A++ Q +R E+ + + F+ + + V+GV+ DLG+SS Sbjct: 65 AKLVVFDKDPEAIAAAQA-LRQEDERVVVVHSGFANMPAQLQALGITEVNGVMLDLGISS 123 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 QID RGFSF + GPLDMRM S G++A+ + Q ++ +L ++ GEE+ A +IA Sbjct: 124 PQIDDASRGFSFMREGPLDMRMDTSSGLTAAQWLAQVDIDELKEVIAKYGEERFAFQIAK 183 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 A++ RR+S P +TT DL+ L+ V + HPATR+FQA+RI++N E++ELA L + Sbjct: 184 AVIARRESRPLRTTLDLAELVASVVRT-REKGQHPATRTFQAIRIYLNQELQELALALAA 242 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKV 292 + L GG L V+SFHSLEDR+VK+ A+ S + + + S+ + Sbjct: 243 VLRVLAPGGRLAVISFHSLEDRMVKQCIAAASRPAAVHARLPILEKDMPQPILNSLGR-- 300 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336 ++PT+++ N R+RSA LR RT + D L Sbjct: 301 ILPTEQESKENVRARSAVLRVAERTSTP-LPPDQGASFITAMNL 343 >gi|119953105|ref|YP_945314.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135] gi|263447569|sp|A1QZA2|RSMH_BORT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119861876|gb|AAX17644.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135] Length = 297 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 168/308 (54%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H+PVLLE++I LL N + G V +D T G GG+S + K NVI +DRD ++ Sbjct: 6 HIPVLLEEIINLLEASNISDGFVFVDCTLGEGGHSSAVLKKYQNINVIGIDRDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++K + S F F +Y ++ ++ DLG+S RGFSF + L Sbjct: 66 KESLIEFKGRVSYFNTWFDDFFSEYPLSSKINFILADLGISMFHYKMSGRGFSFFEDERL 125 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ G+SA D++N + K L ++ L E+ + RI +I++ R+ +T ++L Sbjct: 126 DMRLYPGAGGLSAYDIINTFDKKRLENLIYELSGERYSRRIVKSILEYRKIKKIETPREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K K +I+PAT++FQALRI+VN+E+ L + L ++L G+L +V+FH Sbjct: 186 QDIVSKAYPRIK-LKINPATKTFQALRIYVNDELFRLKRSLPLWVESLSNNGVLAIVTFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF S +TKK ++P E+ FN SRSAKL Sbjct: 245 SLEDKIVKEFFKGLSKDQYC---------------ILTKKPIMPRCEEKRFNSASRSAKL 289 Query: 312 RAGMRTVE 319 R + E Sbjct: 290 RVIKKLYE 297 >gi|255348632|ref|ZP_05380639.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70] gi|255503172|ref|ZP_05381562.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70s] gi|255506850|ref|ZP_05382489.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D(s)2923] gi|289525311|emb|CBJ14787.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis Sweden2] gi|296434861|gb|ADH17039.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/150] gi|296438581|gb|ADH20734.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/11023] Length = 300 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEESLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|308807246|ref|XP_003080934.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1| probable S-ade (ISS) [Ostreococcus tauri] gi|116059395|emb|CAL55102.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1| probable S-ade (ISS) [Ostreococcus tauri] Length = 370 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 109/325 (33%), Positives = 168/325 (51%), Gaps = 27/325 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H V+++++++ + +D T GAGG++++ + + I D D A + Sbjct: 47 TAPHYSVMMDEILSAFRDVELRAHVDGTLGAGGHAQAMIRTHPEMEHFIGFDVDASAHAI 106 Query: 74 GQETMRDYKEQ----------FSLFQATFSQLQDYVPDKGVDG------VVFDLGVSSMQ 117 + + +E SL +A F Q+ + G VV DLGVSSM Sbjct: 107 ARPRLERAREDARGGEAGALKVSLVEANFRQMAQALEAMGGIHRAGIDGVVLDLGVSSMH 166 Query: 118 IDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFSF GPLDMRM + SA ++VN +++ RIL GEE+ +A I Sbjct: 167 LDRAERGFSFMNDGPLDMRMGPSAKTSAEEIVNAWPEEEIGRILRDYGEERHWRLLAKRI 226 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR + TT++L + K IHPATR+FQ +RI VN+E+ + + +A Sbjct: 227 CERRAAKAITTTRELVDALGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAI 284 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV-----MAVRHMIPSNAHPAVFQSITKK 291 +AL+ GG L ++SFHSLED +VKK F +G+ R+M P V + IT+K Sbjct: 285 EALRPGGRLAIISFHSLEDSIVKKKFRFYAGQAEPLGETFNRYMDQPEKPPKVVKLITRK 344 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 +VP+ ++V N RSRSAKLR + Sbjct: 345 PLVPSVDEVDENVRSRSAKLRVCEK 369 >gi|296284506|ref|ZP_06862504.1| S-adenosyl-methyltransferase MraW [Citromicrobium bathyomarinum JL354] Length = 303 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 124/302 (41%), Positives = 179/302 (59%), Gaps = 10/302 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQFS 86 +A L P ++I+D TFGAGGY+R+ G+ V A DRDP A+ Q + + + Sbjct: 2 VAALRPVQDELIVDGTFGAGGYTRALLDAGATVHAFDRDPTALENAQGWPELAETPPRLV 61 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 L + F+ + + ++ VDG+V D+GVSSMQ+D DRGFSF GPLDMRM S Sbjct: 62 LHRRAFADMAAALAEQGIARVDGIVLDIGVSSMQLDQADRGFSFAGDGPLDMRMDPDLPS 121 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 A+D +N A+ ++ ++ GEE+Q+ RIA AIV R P +TT L+ L++K Sbjct: 122 AADFLNSADEAEIADVIYQYGEERQSRRIARAIVAAR---PLETTGQLARLVRKATGHKP 178 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 +++ PATR+FQA+RI VN E+E+L L +AE+ L GG L+VVSFHSLEDR+VK+F Sbjct: 179 HDKKDPATRTFQAIRIHVNGELEQLRGALAAAERLLAPGGRLVVVSFHSLEDRIVKRFMR 238 Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 SG+ RH+ + PA F + V + ++A N R+RSA LRA RT Sbjct: 239 DASGQAGGGSRHLPLAETPPATFDKPLR-AVRAGEAELARNPRARSAILRAATRTDAAPR 297 Query: 323 ED 324 ++ Sbjct: 298 KE 299 >gi|33593961|ref|NP_881605.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis Tohama I] gi|33598269|ref|NP_885912.1| S-adenosyl-methyltransferase MraW [Bordetella parapertussis 12822] gi|33603180|ref|NP_890740.1| S-adenosyl-methyltransferase MraW [Bordetella bronchiseptica RB50] gi|42558972|sp|Q7VUP6|RSMH_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42558973|sp|Q7W4A7|RSMH_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42558974|sp|Q7WFR5|RSMH_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33564035|emb|CAE43301.1| S-adenosyl-methyltransferase [Bordetella pertussis Tohama I] gi|33566827|emb|CAE39042.1| S-adenosyl-methyltransferase [Bordetella parapertussis] gi|33568811|emb|CAE34569.1| S-adenosyl-methyltransferase [Bordetella bronchiseptica RB50] gi|332383379|gb|AEE68226.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis CS] Length = 364 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 121/336 (36%), Positives = 174/336 (51%), Gaps = 35/336 (10%) Query: 16 TIGDHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRS 53 +H PVLLE + L P P V +D TFG GG+SR+ Sbjct: 1 MEFEHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRA 60 Query: 54 FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107 ++ D+DP A++ +E + + + F+ + + + + VDGV Sbjct: 61 LLARLGAQARLVVFDKDPQAIAVARE-LAAGDGRVEVVHGGFATMAEELTARGIEQVDGV 119 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS QID +RGFSF + GPLDMRM G + +D + QA+V ++ ++ GEE Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A ++A AI R + P TT L+ + V + HPATR+FQALRI++N E+E Sbjct: 180 RFAFQVAKAIAACRATRPLHTTLQLAECVAGAVRT-REKGQHPATRTFQALRIYINRELE 238 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284 ELA+ L SA L GG L V+SFHSLEDR+VK+ A+ + A + S + Sbjct: 239 ELARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESELPQPL 298 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +S+ K VV +VA N R+RSA LR RT E Sbjct: 299 VRSLGK--VVADDVEVAGNARARSAILRVAERTGEP 332 >gi|295394731|ref|ZP_06804946.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC 49030] gi|294972327|gb|EFG48187.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC 49030] Length = 362 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 170/320 (53%), Gaps = 20/320 (6%) Query: 16 TIGDHVPVLLEKVIALLN----------PAPGKVILDATFGAGGYSRSFCKMGS--NVIA 63 HVPVLL+ + LL AP V++D T G GG+S ++ +VI Sbjct: 40 MTYPHVPVLLDMCVELLGHGIEEARARGIAP--VVIDFTLGMGGHSEGILRVFDDVHVIG 97 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDC 120 +DRDP A+ + + +F + + + + + GV+FDLGVSS+Q+D Sbjct: 98 IDRDPAAIEIATSRLAPFGSRFEAVCTSDDNISEVLEQRGNPPISGVLFDLGVSSLQLDD 157 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFS+ + PLDMRM+ GISA+DV+ + DLTRI+ GEE+ A RIA AIV Sbjct: 158 DARGFSYSRDTPLDMRMNPTEGISAADVLATYSENDLTRIISTYGEERYARRIARAIVAD 217 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ P+ +TQ L+ LI + V KN R HPA R+FQALRI VN+E+ + + L +A Sbjct: 218 REHTPWTSTQQLADLIGRIVPDPKNQRKRSHPAKRTFQALRIEVNDELGNITRSLPAALS 277 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL GG+ +V S+ S ED +VK+ F + + + + I + Q Sbjct: 278 ALHLGGVAVVESYQSGEDIIVKRIFRQGTTVQAPPDLPVVPDHLKPWLEEIVRGAYKAPQ 337 Query: 298 EDVAFNRRSRSAKLRAGMRT 317 E++ N R+ S +LRA +T Sbjct: 338 EEIDHNPRAASVRLRAVRKT 357 >gi|289522914|ref|ZP_06439768.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503938|gb|EFD25102.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 300 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 180/313 (57%), Gaps = 25/313 (7%) Query: 16 TIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL ++I +L+ + K+++DAT G GG++ + ++ LD+D A+ Sbjct: 2 ETIRHVPVLTNEIINILSLSDDLKLVVDATVGLGGHAYALLSTFPDIKLLGLDQDETALE 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E ++ + E+ L ++ F + D V + VD ++FDLGVSS+QID +RGFSF Sbjct: 62 IAYERLKPFGERVLLVKSNFRFIDDVVKNHFRSVAVDAILFDLGVSSLQIDDEERGFSFN 121 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQ 186 K GP+DMRM ++A D++N +KDL+ I GEE+ + +IA AIV+ R+ Sbjct: 122 KPGPIDMRMDREAKVTAFDIINNYCIKDLSDIFYKYGEERYSRQIAKAIVRYREQKGLIA 181 Query: 187 TTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L +I++ + + HPA R FQALRI VN+E+ L GL+++ L++GG Sbjct: 182 STAELVEIIRRALPAKIQRQMGKHPARRVFQALRIVVNDELGALESGLKNSLGCLRSGGH 241 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 LIV+S+HSLEDR+VK F + + + +KK ++P +E++ N Sbjct: 242 LIVISYHSLEDRIVKHSFKDWEKEGI--------------GKIFSKKPILPKREEIEGNP 287 Query: 305 RSRSAKLRAGMRT 317 RSRSAKLR +++ Sbjct: 288 RSRSAKLRVLIKS 300 >gi|303232694|ref|ZP_07319379.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4] gi|302481180|gb|EFL44255.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4] Length = 316 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 28/317 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM- 78 H+PV+L++ +A LNP PG+++ D T GA G++ + + P +S G + Sbjct: 7 HIPVMLQETLAYLNPKPGEIVCDCTLGAAGHTVALAERIC--------PDGLSIGIDQDD 58 Query: 79 ------------RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123 Q+ Q FSQ+ + + VD V+FDLGVSS Q+D R Sbjct: 59 AAIAAATQHITRACPTAQYRFLQGNFSQIDELLLKAEVVGVDCVLFDLGVSSPQLDIPSR 118 Query: 124 GFSFQKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 GFS+ ++ PLDMRM + ++V+N N DLTRIL + G+EK A +IA IVK RQ Sbjct: 119 GFSYHENAPLDMRMDPRNNTLNAAEVINTYNEADLTRILRVFGDEKFAPQIARRIVKERQ 178 Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + +TT +L +I+ ++ ++ + HPA ++FQA+RI VN+E++ L GL A L Sbjct: 179 TKAIETTFELVDIIKASIPAAARRHAKHPARKTFQAIRIEVNHELDVLQVGLERAIAWLN 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQED 299 GG + V+S+HSLEDRLVK FA + + + + ITKK + + E+ Sbjct: 239 TGGRMCVISYHSLEDRLVKHVFAQYARGCVCPVDLPVCVCHKKPIIDVITKKPLYASDEE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 VA N R+RSA +R + Sbjct: 299 VARNPRARSACMRVCKK 315 >gi|240168225|ref|ZP_04746884.1| S-adenosyl-methyltransferase MraW [Mycobacterium kansasii ATCC 12478] Length = 330 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 110/320 (34%), Positives = 177/320 (55%), Gaps = 18/320 (5%) Query: 22 PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 PVL + + LL PA P +++DAT GAGG++ F + +I LDRDP A+ Sbjct: 2 PVLARRCVELLAPALTRRHPDGFGAILVDATLGAGGHAERFLRELPGLRLIGLDRDPSAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD------KGVDGVVFDLGVSSMQIDCGDRGF 125 ++ + + E+ +L + + + + + + VDGV+FDLGVSSMQ+D +RGF Sbjct: 62 DIARDRLAPFAERITLIRTRYDGVASVLAELGYGAVESVDGVLFDLGVSSMQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ K PLDMRM ++A+D+VN + L IL GEE+ A RIA IV++R P Sbjct: 122 AYAKDAPLDMRMDPDIPLTAADIVNSYDEAALADILRRYGEERFARRIAERIVRQRAHTP 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F +T +L +++ + + + + HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 182 FTSTSELVAVVYQAIPAAARRTGGHPAKRTFQALRIAVNDELDTLRGAVPAAMAALRVGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK+ FA + + H F+S+T ++ N Sbjct: 242 RIVVMAYQSLEDRIVKRVFADAVASKTPIGLPVELPGHGPRFRSLTHGAERADAAEMERN 301 Query: 304 RRSRSAKLRAGMRTVERSIE 323 RS + +LRA R + Sbjct: 302 PRSAAVRLRALQRIDHEAEP 321 >gi|187607601|ref|NP_001120214.1| methyltransferase like 15 [Xenopus (Silurana) tropicalis] gi|166796910|gb|AAI59379.1| LOC100145263 protein [Xenopus (Silurana) tropicalis] Length = 375 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 129/330 (39%), Positives = 173/330 (52%), Gaps = 33/330 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HVPV++ +V L P G+ ILD TFGAGG++ S K S V+ALDRDP A + Q+ Sbjct: 45 HVPVMVNEVTECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFAIAQQL 104 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 FS+ +D + +DGV+ D G SSMQ D DRGFS + GP Sbjct: 105 AHSCGHNIQPLLGRFSESKDLLTSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSRDGP 164 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEE+ A +IA AIV+ R P T Sbjct: 165 LDMRMDGDRYPDMPTAADVVNALDQQALASILKTYGEERHAKKIASAIVQARSIYPITRT 224 Query: 189 QDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 Q L+S++ ++ H AT++FQALRIFVNNE+ EL GL +AE L+ GG Sbjct: 225 QQLASIVTGASIQARTDLLQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFLRPGGR 284 Query: 245 LIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNA-----HPAVFQ 286 L+V+SFHSLEDR+VK+F + + + + Sbjct: 285 LVVISFHSLEDRIVKRFLHGIDMADKPNLAARHKIRQGQRNSKEMEDEEFLMSHSNPAWT 344 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I KKV+ P +DV N R RSAKLRA ++ Sbjct: 345 VIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374 >gi|296217807|ref|XP_002755199.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Callithrix jacchus] Length = 406 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 190/352 (53%), Gaps = 44/352 (12%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60 + ++ +TM + H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ Sbjct: 61 QDRNFETM-------VKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDI 113 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVS 114 + ALDRDP A + + Y +Q FSQ ++ V DGV+ DLG S Sbjct: 114 VLYALDRDPTAYALAEHLSELYPKQIRAMLGRFSQAETLLMKAEVQPGTFDGVLMDLGCS 173 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170 SMQ+D +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A Sbjct: 174 SMQLDTSERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAK 233 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVN 222 +IA AIV+ R P TQ L+S+ +Y K H AT++FQALRIFVN Sbjct: 234 KIASAIVQARSIYPITRTQQLASIIAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVN 293 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF------------------FAS 264 NE+ EL GL++A+K L+ GG L+ +SFHSLEDR+VK+F + Sbjct: 294 NELNELHTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKA 353 Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + P +++ I KKV+ P DV N R RSAKLRA ++ Sbjct: 354 SRLDSDHENVEVSMRRAPLMWELIHKKVLSPQSRDVQDNPRGRSAKLRAAIK 405 >gi|227488521|ref|ZP_03918837.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51867] gi|227091415|gb|EEI26727.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51867] Length = 354 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 99/325 (30%), Positives = 162/325 (49%), Gaps = 20/325 (6%) Query: 15 HTIGDHVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 HVPVL ++++ LL +++D T GAGG++ + VI +DRD Sbjct: 26 QENHGHVPVLRDRMVELLRRGIAVDGATGIVVDGTLGAGGHTEHLLATDPNARVIGVDRD 85 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSM 116 A+ + + ++F F + + +FDLGVSSM Sbjct: 86 AQALKDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSM 145 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF+++ PLDMRM GI+A+DV+N + DL R+L GEEK A +IA A Sbjct: 146 QLDQEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASA 205 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +++ R+ PF + L L+ T+ + + HPA R+FQALR+ VN E+ L Q + Sbjct: 206 VIREREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPV 265 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 AL GG+++ +S+ SLED++VKK A + + F +T+ Sbjct: 266 TADALHVGGVMVFMSYQSLEDKIVKKALAKLTTSTNPPGLPVDLPGTEPHFALVTRGSEK 325 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 +++++ N R+ S ++RA R + Sbjct: 326 ASKKEIDQNPRAASVRVRAAQRVLN 350 >gi|220912331|ref|YP_002487640.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus A6] gi|263447791|sp|B8HGW2|RSMH_ARTCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219859209|gb|ACL39551.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus A6] Length = 330 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 15/311 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS- 59 M+ T HVPVL ++ I LL P GK +++DAT G GG+S + + Sbjct: 1 MNEQPKPTSERHVPVLRDRCINLLAPGFDAARQQGKAPIVIDATLGMGGHSEAMLQRFPD 60 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115 ++I +DRD A++ E + + + L A + ++ + + D + G++ DLGVSS Sbjct: 61 LHLIGIDRDEEALALAGERLAPFSARTDLVHAVYDEIPEVLADLGVTEISGILMDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D +RGF++ PLDMRM G +A+DVVN N ++L RI+ GEEK A RIA+ Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYNEEELVRIIRKWGEEKFAGRIAN 180 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + Sbjct: 181 RIVAARGEKPFTTTGELVEQIRSVVPAGAAKSGGHPAKRTFQALRIEVNEELDVLERAVP 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A AL GG ++V+S+HSLED++VK RS + + H + +TK Sbjct: 241 AAVDALAMGGRIVVMSYHSLEDKIVKSVLQGRSKSSAPLGFPVELEEHKPELKILTKGTE 300 Query: 294 VPTQEDVAFNR 304 VPT ++A N Sbjct: 301 VPTAVEIAENP 311 >gi|166154483|ref|YP_001654601.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 434/Bu] gi|166155358|ref|YP_001653613.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335743|ref|ZP_07223987.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2tet1] gi|263446017|sp|B0B7I8|RSMH_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446024|sp|B0BBQ3|RSMH_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165930471|emb|CAP03964.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931346|emb|CAP06918.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRGRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARG--------------LGKILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Acyrthosiphon pisum] Length = 351 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 122/332 (36%), Positives = 173/332 (52%), Gaps = 28/332 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 H H PVLLE+ I+ L+P G I+D TFGAGG++ + V LDRDP A + Sbjct: 20 HNSRPHKPVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTTVVYCLDRDPTACA 79 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ Y + + FS L DG++FD G SSMQ D RGFS Sbjct: 80 MAKQLSERYPNRVIPLKGKFSDLPVLLKNLGCKMNSFDGILFDFGASSMQFDTASRGFSI 139 Query: 128 QKSGPLDMRMSCSGISA--SDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 K+GPLDMRM + +DV+ +A+ DL +I + GEEKQ+ +IA+ I R P Sbjct: 140 SKNGPLDMRMDPEEQTITAADVLAKADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFKP 199 Query: 185 FQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT+D L+Q + + HPAT+ FQALRIFVNNE+ E+ + A L Sbjct: 200 LKTTRDFCELVQNVCDNEMRSDMLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHYL 259 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQ--------- 286 K GG+++ V+FHSLED +VK+ + ++++ P A+ F Sbjct: 260 KMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCWH 319 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 I K V+ P+ E+V N RSRSA+LRA +R Sbjct: 320 QIHKHVITPSVEEVESNPRSRSARLRAAVRIK 351 >gi|222824174|ref|YP_002575748.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100] gi|263447001|sp|B9KD58|RSMH_CAMLR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222539396|gb|ACM64497.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100] Length = 305 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 153/304 (50%), Gaps = 7/304 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H+PVLL++V+ + LD T G GG+S++ + +IA D+D A++ Sbjct: 1 MQSPHIPVLLQEVLDAFDDFDSGDFLDCTLGYGGHSKALLQAHEKLRLIACDKDLEALNF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E ++ ++++ S F + +P + + G++ D+GVSS+Q+D DRGFS Sbjct: 61 SKEFLKKFQDRISFNHIGFKDILTQIPTQNLRGILADIGVSSLQLDKNDRGFSLNSDFLD 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEE-KQASRIAHAIVKRRQSAPFQTTQDLS 192 + +SA +VVN + + L +I G+ AS + I+ R + ++LS Sbjct: 121 MRMDQNNLLSAKEVVNSYSKEALEQIFKDYGDLAPVASMLTQKIINARSQKEITSAKELS 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I +N + A FQALRI VNNE+ EL L + EKA L ++SFHS Sbjct: 181 QIIGNAKLKGRN--VSLALLVFQALRIEVNNELGELKSLLENIEKAKLKDCKLAIISFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + I ++ + ++KK + ++E++++N RS AK Sbjct: 239 LEDRIVKNTFKRWEKDCICDERAIKCECGKGHSLGKILSKKAISASKEEISYNSRSSCAK 298 Query: 311 LRAG 314 +R Sbjct: 299 MRIF 302 >gi|308380285|ref|ZP_07669154.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis SUMu011] gi|308361967|gb|EFP50818.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis SUMu011] Length = 425 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64 T HVPVL ++ LL PA P V+LDAT GAGG++ F + +I L Sbjct: 89 PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 148 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + + G DG++FDLGVSSMQ+ Sbjct: 149 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 208 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ PLDMRM + +A+D+VN + L IL GEE+ A RIA IV Sbjct: 209 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 268 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + + HPA R+FQALRI VN+E+E L + +A Sbjct: 269 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 328 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL GG + V+++ SLEDR+VK+ FA + H F+S+T + Sbjct: 329 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 388 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321 ++ N RS +LRA R R+ Sbjct: 389 VAEIERNPRSTPVRLRALQRVEHRA 413 >gi|308232054|ref|ZP_07663988.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis SUMu001] gi|308370931|ref|ZP_07667052.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis SUMu003] gi|308372156|ref|ZP_07667311.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis SUMu004] gi|308215154|gb|EFO74553.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis SUMu001] gi|308330345|gb|EFP19196.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis SUMu003] gi|308334178|gb|EFP23029.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis SUMu004] Length = 405 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64 T HVPVL ++ LL PA P V+LDAT GAGG++ F + +I L Sbjct: 69 PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 128 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + + G DG++FDLGVSSMQ+ Sbjct: 129 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 188 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ PLDMRM + +A+D+VN + L IL GEE+ A RIA IV Sbjct: 189 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 248 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + + HPA R+FQALRI VN+E+E L + +A Sbjct: 249 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 308 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL GG + V+++ SLEDR+VK+ FA + H F+S+T + Sbjct: 309 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 368 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321 ++ N RS +LRA R R+ Sbjct: 369 VAEIERNPRSTPVRLRALQRVEHRA 393 >gi|15841657|ref|NP_336694.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CDC1551] gi|161352465|ref|NP_216681.2| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Rv] gi|161511532|ref|NP_855838.2| S-adenosyl-methyltransferase MraW [Mycobacterium bovis AF2122/97] gi|215403555|ref|ZP_03415736.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|215431098|ref|ZP_03429017.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|218753888|ref|ZP_03532684.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis GM 1503] gi|219558145|ref|ZP_03537221.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T17] gi|254551204|ref|ZP_05141651.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187163|ref|ZP_05764637.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|260201284|ref|ZP_05768775.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T46] gi|294993552|ref|ZP_06799243.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 210] gi|297634755|ref|ZP_06952535.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN 4207] gi|307084822|ref|ZP_07493935.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis SUMu012] gi|308369641|ref|ZP_07666771.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis SUMu002] gi|313659080|ref|ZP_07815960.1| 16S rRNA m(4)C1402 methyltranserfase [Mycobacterium tuberculosis KZN V2475] gi|54037824|sp|P65430|RSMH_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041487|sp|P65429|RSMH_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831560|sp|A5U4J2|RSMH_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460389|sp|A1KKK8|RSMH_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460410|sp|C1AQ81|RSMH_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13881910|gb|AAK46508.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|308326909|gb|EFP15760.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis SUMu002] gi|308365608|gb|EFP54459.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis SUMu012] Length = 344 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64 T HVPVL ++ LL PA P V+LDAT GAGG++ F + +I L Sbjct: 8 PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 67 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + + G DG++FDLGVSSMQ+ Sbjct: 68 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 127 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ PLDMRM + +A+D+VN + L IL GEE+ A RIA IV Sbjct: 128 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 187 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + + HPA R+FQALRI VN+E+E L + +A Sbjct: 188 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 247 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL GG + V+++ SLEDR+VK+ FA + H F+S+T + Sbjct: 248 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 307 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321 ++ N RS +LRA R R+ Sbjct: 308 VAEIERNPRSTPVRLRALQRVEHRA 332 >gi|121638047|ref|YP_978271.1| S-adenosyl-methyltransferase MraW [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661981|ref|YP_001283504.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Ra] gi|148823374|ref|YP_001288128.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis F11] gi|224990541|ref|YP_002645228.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798770|ref|YP_003031771.1| methylase MraW [Mycobacterium tuberculosis KZN 1435] gi|254364966|ref|ZP_04981012.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|260205463|ref|ZP_05772954.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289443672|ref|ZP_06433416.1| MraW methylase MraW [Mycobacterium tuberculosis T46] gi|289447793|ref|ZP_06437537.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|289554048|ref|ZP_06443258.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570281|ref|ZP_06450508.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289574851|ref|ZP_06455078.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289745439|ref|ZP_06504817.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|289750761|ref|ZP_06510139.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754275|ref|ZP_06513653.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|289758287|ref|ZP_06517665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] gi|289762326|ref|ZP_06521704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297731746|ref|ZP_06960864.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN R506] gi|298525659|ref|ZP_07013068.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|306793634|ref|ZP_07431936.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis SUMu005] gi|308375796|ref|ZP_07668118.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis SUMu007] gi|308376929|ref|ZP_07668385.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis SUMu008] gi|308377928|ref|ZP_07668626.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis SUMu009] gi|308379135|ref|ZP_07668903.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis SUMu010] gi|2104313|emb|CAB08662.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31618937|emb|CAD97042.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493695|emb|CAL72170.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150480|gb|EBA42525.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506133|gb|ABQ73942.1| S-adenosyl-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148721901|gb|ABR06526.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224773654|dbj|BAH26460.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320273|gb|ACT24876.1| methylase MraW [Mycobacterium tuberculosis KZN 1435] gi|289416591|gb|EFD13831.1| MraW methylase MraW [Mycobacterium tuberculosis T46] gi|289420751|gb|EFD17952.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|289438680|gb|EFD21173.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539282|gb|EFD43860.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289544035|gb|EFD47683.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685967|gb|EFD53455.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|289691348|gb|EFD58777.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289694862|gb|EFD62291.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|289709832|gb|EFD73848.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713851|gb|EFD77863.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] gi|298495453|gb|EFI30747.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|308337978|gb|EFP26829.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis SUMu005] gi|308345155|gb|EFP34006.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis SUMu007] gi|308349457|gb|EFP38308.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis SUMu008] gi|308354088|gb|EFP42939.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis SUMu009] gi|308358031|gb|EFP46882.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis SUMu010] gi|326903782|gb|EGE50715.1| hypothetical protein TBPG_01665 [Mycobacterium tuberculosis W-148] gi|328458533|gb|AEB03956.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 396 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 18/325 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIAL 64 T HVPVL ++ LL PA P V+LDAT GAGG++ F + +I L Sbjct: 60 PTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGL 119 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + + G DG++FDLGVSSMQ+ Sbjct: 120 DRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQL 179 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ PLDMRM + +A+D+VN + L IL GEE+ A RIA IV Sbjct: 180 DRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIV 239 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + + HPA R+FQALRI VN+E+E L + +A Sbjct: 240 RRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAAL 299 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL GG + V+++ SLEDR+VK+ FA + H F+S+T + Sbjct: 300 DALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERAS 359 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERS 321 ++ N RS +LRA R R+ Sbjct: 360 VAEIERNPRSTPVRLRALQRVEHRA 384 >gi|289826154|ref|ZP_06545266.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 279 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 109/274 (39%), Positives = 160/274 (58%), Gaps = 12/274 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIAHAIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 +SFHSLEDR+VK+F +S + + A Sbjct: 239 ISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQ 272 >gi|183221148|ref|YP_001839144.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911239|ref|YP_001962794.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|263456288|sp|B0S989|RSMH_LEPBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456310|sp|B0SRS3|RSMH_LEPBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167775915|gb|ABZ94216.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779570|gb|ABZ97868.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 314 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 168/317 (52%), Gaps = 31/317 (9%) Query: 18 GDHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 H+PVL +VI+LL NP P + LD T G GG+S+ K +I +DRD + Sbjct: 4 SPHIPVLPSEVISLLQQTKNPNP-QWFLDGTAGEGGHSKLILKTFPEAKLILIDRDAVML 62 Query: 72 SCGQ-ETMRDYK--EQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + E +++ ++ FQ FS+ L V +DG + DLGVS RG Sbjct: 63 ERAKKEILKEIGSLDRVHAFQMNFSEVDSELLQEVGCPSLDGALVDLGVSLFHFLHSGRG 122 Query: 125 FSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 F+F+ PLDMR+ + G +A+DVVN ++V L ++ GEE+ A +IA+ IV+ R Sbjct: 123 FTFKNDEPLDMRLEANIGGKTAADVVNYSSVLHLKKVFWEYGEERWALKIANNIVQTRHK 182 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 F T DL L++ ++ + HPATR FQALRI VN E+ +G+R+ + L Sbjct: 183 KKFGTNTDLVKLVEASIPRKFWPKESHPATRIFQALRIEVNEELVHAEKGIRALAQCLGI 242 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG+L +SFHSLEDR+VK F F+ +TKK ++P++ ++ Sbjct: 243 GGVLTCISFHSLEDRIVKWTFRDLKDNGP--------------FEILTKKPILPSETEIK 288 Query: 302 FNRRSRSAKLRAGMRTV 318 NR SRSAKLR M+ Sbjct: 289 ENRASRSAKLRGLMKIN 305 >gi|319949143|ref|ZP_08023234.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4] gi|319437192|gb|EFV92221.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4] Length = 340 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 164/331 (49%), Gaps = 22/331 (6%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS-- 59 + T HVPV LE+ I L P A VI+D T G GG+S Sbjct: 6 DADRDATRSGHVPVFLERTIELFRPVVEAAAEEGRAPVIVDGTLGLGGHSSHLLAEFGEL 65 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG----------VVF 109 V+ +DRDP A+ + Y+++F+ A F + D ++ Sbjct: 66 RVLGVDRDPEALDMATRRLTAYRDRFTPVHARFDDFNSVIAALPPDARDDAGPAIDGILL 125 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168 D GVSSMQ+D +RGF++ PLDMRM + G +A+D++ + +L RIL + GEE+ Sbjct: 126 DFGVSSMQLDVAERGFAYSVDAPLDMRMDPTTGPTAADILAEYPRDELARILRVYGEERF 185 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227 A +IA AIV+RR + P T+ L L+ T+ + HP R FQALRI VN E+E Sbjct: 186 ARQIAAAIVRRRDTDPIVTSSQLVELLYDTIPQGARRTGGHPGKRVFQALRIEVNAELEA 245 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 + + L+ GG + +++HSLED++VK+ A+R+ + H F++ Sbjct: 246 VENAVPGYLDLLRLGGRAVFMAYHSLEDKIVKRELATRTASRTPAGLPVELPGHGPEFEA 305 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +T+ +QE++ N RS S ++R R Sbjct: 306 VTRGAEKASQEEIDHNPRSASVRVRCVRRID 336 >gi|32266778|ref|NP_860810.1| S-adenosyl-methyltransferase MraW [Helicobacter hepaticus ATCC 51449] gi|42559453|sp|Q7VGP1|RSMH_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|32262830|gb|AAP77876.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 317 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H VL ++I L+ +++D T G GG++ + N V A D+D +A++ + Sbjct: 2 KHYSVLKNEMIQALDCLKEDSILIDCTLGFGGHTIGALQAYPNIEVYAFDKDIYALNLAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ Y + FSQ D VP+ V G++ D+GVSSMQ+D RGFSF S Sbjct: 62 ERLKPYLQNIHFCHNAFSQFLDIVPNVVLPRVRGIIADIGVSSMQLDETQRGFSFVSSTL 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 + + ++A+ V+N + L I I GE +Q+ ++A I R+ PF + +LS Sbjct: 122 DMRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYERKKKPFSSCLELS 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS----AEKALKAGGLLIVV 248 +LI++ +F + IHPAT +FQALRI VN+E+ EL + L + ++ A + ++ Sbjct: 182 TLIEQ--HFPRVGGIHPATLAFQALRIEVNDELGELKRLLHNIELAFDEGKIASCRVGII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR++K+ F S + + A Q +TKK ++PT +++A N+RS Sbjct: 240 SFHSLEDRIIKQCFKQWSKSCICAEESLRCECGNNHAKGQILTKKPIIPTPQEIAQNKRS 299 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 300 RSAKLRIFE 308 >gi|241257348|ref|XP_002404552.1| SAM dependent methyltransferase, putative [Ixodes scapularis] gi|215496661|gb|EEC06301.1| SAM dependent methyltransferase, putative [Ixodes scapularis] Length = 292 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 110/289 (38%), Positives = 160/289 (55%), Gaps = 9/289 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 V +D TFG GG+SR S +I +D+DP A++ QE + + ++ + F Sbjct: 6 DGVYVDCTFGRGGHSRLLLSHLSPQARLIVIDKDPQAIAVAQE-LAAQDSRVTVVHSGFG 64 Query: 94 QLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVN 149 L + + + GV+ DLG+SS QID +RGFSF + GPLDMRM SG +A + Sbjct: 65 DLAQALDELEVGPLQGVMMDLGISSPQIDDAERGFSFMREGPLDMRMDTSGGLTAEQWLA 124 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHP 209 + +V+ L ++ GEE+ A +IA AIV RRQS P TT+DL+ L+ V + HP Sbjct: 125 EVSVEVLKEVIAEYGEERFAFQIAKAIVDRRQSRPLHTTRDLAELVAGVVRT-REKGQHP 183 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269 ATR+FQA+RI++N E+EELA L S L G L V++FHSLEDR+VK+F + + Sbjct: 184 ATRTFQAIRIYLNRELEELAYALPSILSRLATRGRLAVIAFHSLEDRMVKQFMNAAARPA 243 Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + ++PT E+ + N R+RSA LR RT Sbjct: 244 QEQSRLPILEKDLPQPLVQSLGRILPTDEESSDNPRARSAVLRVVQRTD 292 >gi|229817311|ref|ZP_04447593.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM 20098] gi|229785100|gb|EEP21214.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM 20098] Length = 354 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 164/321 (51%), Gaps = 15/321 (4%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIA----LLNPAPGKVILDATFGAGGYSRSFCKMGS--NV 61 TM + TI H PVLLE + L+ +I+D T G G++ +F K + Sbjct: 2 TMDNRDVSTI--HQPVLLEDCVRLVTGGLSRKQSPIIVDCTLGLAGHATAFLKAAPQARL 59 Query: 62 IALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSM 116 + +DRD A++ E M+ ++F A F + + D G+ V DLG+SS+ Sbjct: 60 VGIDRDAEALALATERMKAEGLADRFIPVHAPFDEFTRALDDNGIHHVDAAFMDLGLSSL 119 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 QID +RGFS+ PLDMRM S +A V+ + + +DL RI + GEE+ A IA Sbjct: 120 QIDETERGFSYSHDAPLDMRMDVSQALTAEQVLAEYDERDLARIFKVYGEERFARPIARR 179 Query: 176 IV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV +R Q P T+ +L+ L+ + + + +PA R FQALRI VN E+++LA L Sbjct: 180 IVARRTQEGPLTTSAELNELVDEVIPKAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQ 239 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 L GG ++V S+HSLED+ VK F + I F+ +T+ V Sbjct: 240 IALKLNKGGRIVVESYHSLEDKTVKSFMTQGLTARVPANMPIVPPEAMPFFKELTRGAVK 299 Query: 295 PTQEDVAFNRRSRSAKLRAGM 315 ++++A N RS S +LRA Sbjct: 300 ADEQEIASNPRSASVRLRAVE 320 >gi|301633398|gb|ADK86952.1| S-adenosyl-methyltransferase MraW [Mycoplasma pneumoniae FH] Length = 308 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 10/308 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + H VLL++VI LN LD T G GG+S+ + + D D +++ Sbjct: 3 SNQPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITF 62 Query: 74 GQETMRDYKEQF--SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D K A F + DG++ DLGVSS Q+D +RGFSF+ +G Sbjct: 63 CTELFKDKKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAG 122 Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188 P DMRM S +A D++ + + ++LT +L GE IA A+ T Sbjct: 123 PFDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNIKNPTTV 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ F K + + FQA+RI++N E+E L L+ K L G +V+ Sbjct: 183 EVAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLE++LV+ + + V + F+ ITKK ++PT++++ N R+RS Sbjct: 243 VFHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRARS 299 Query: 309 AKLRAGMR 316 AKL + Sbjct: 300 AKLFVIEK 307 >gi|294506454|ref|YP_003570512.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8] gi|294342782|emb|CBH23560.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8] Length = 336 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 170/323 (52%), Gaps = 20/323 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVL V A L +DAT G GG++R+ + V+ +DRDP A+ ++ Sbjct: 24 HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D +E +F TF L+D + +DG++ DLGVSS QID +RGFSF+ G Sbjct: 84 RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G++A +VN +DL +L GEE +A +IA A+ R P TT+ Sbjct: 144 PLDMRMDPQRGLTAQQIVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ V + + TR FQALRI VN E++EL Q L A + ++ GG + +S+ Sbjct: 201 LAEVVEDCVPP--PDTVKTLTRVFQALRIAVNAELDELEQALEQATEVVRTGGRIAAISY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK++ + + R + + A + + + + +V N R+RSA Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGT--LVAPWAETPRGPIEAGESEVEANPRARSAH 316 Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333 LR R +D++ LP L Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335 >gi|71066610|ref|YP_265337.1| S-adenosyl-methyltransferase MraW [Psychrobacter arcticus 273-4] gi|71039595|gb|AAZ19903.1| probable S-adenosyl-methyltransferase [Psychrobacter arcticus 273-4] Length = 384 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 164/329 (49%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 H VLL++ +A + + + +DATFG GG+SR ++ Sbjct: 60 HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 119 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQ 117 +I D+DP A+ QE + + + +F+ L D + VDG++ DLG+SS Q Sbjct: 120 LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 178 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID G RGFSF + G +DMRM G S ++ + + L +L GEE+ + RIA AI Sbjct: 179 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 238 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + + ++ K + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 239 KQMDRYKSTLELAEV----IKVAHPNWQRGKHPATQSFQAMRIFINNELGDVDNFLEQSI 294 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 LK GG L V+SFHSLEDR +K+F S G+ ++ P F + V P Sbjct: 295 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLPMPPKRPRYFSKPKR--VGP 352 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ +++ N RSRSA LR RT + D Sbjct: 353 SKAEISNNPRSRSAWLRMATRTDTDYLAD 381 >gi|88909214|sp|Q4FQ05|RSMH_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 334 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 164/329 (49%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 H VLL++ +A + + + +DATFG GG+SR ++ Sbjct: 10 HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 69 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQ 117 +I D+DP A+ QE + + + +F+ L D + VDG++ DLG+SS Q Sbjct: 70 LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 128 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID G RGFSF + G +DMRM G S ++ + + L +L GEE+ + RIA AI Sbjct: 129 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 188 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + + ++ K + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 189 KQMDRYKSTLELAEV----IKVAHPNWQRGKHPATQSFQAMRIFINNELGDVDNFLEQSI 244 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 LK GG L V+SFHSLEDR +K+F S G+ ++ P F + V P Sbjct: 245 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLPMPPKRPRYFSKPKR--VGP 302 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ +++ N RSRSA LR RT + D Sbjct: 303 SKAEISNNPRSRSAWLRMATRTDTDYLAD 331 >gi|326559297|gb|EGE09724.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 7169] gi|326568235|gb|EGE18317.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC8] gi|326569935|gb|EGE19982.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC1] gi|326573681|gb|EGE23639.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E] Length = 330 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 25/328 (7%) Query: 9 MSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58 MS+ I + H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 1 MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60 Query: 59 S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLG 112 + + D+DP A++ + + + + +F+ L + +DG++ DLG Sbjct: 61 APEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D G RGFSF + G +DMRM G S+ + + + +L +L GEE+ + + Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 180 IARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F + Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPKR 295 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + P+ ++V N R+RSA LR +R+ Sbjct: 296 --IGPSDQEVKANPRARSAWLRGAVRSD 321 >gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi] gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi] Length = 368 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 123/332 (37%), Positives = 174/332 (52%), Gaps = 31/332 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPVL + I L P P +D TFGAGG++R + V ALDRDP A Q Sbjct: 37 APHVPVLCQTAIEYLEPRPKGKYIDMTFGAGGHTRRLLDSCPEATVYALDRDPIAYELAQ 96 Query: 76 ETMRD--YKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Y + FS L + D DG++FD G SSMQ D RGFS Sbjct: 97 RLSQESAYAGRLVPLLGKFSDLPQLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSIA 156 Query: 129 KSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184 +GPLDMRM C G+SA+DV+ + DL RIL + GEEK A +IA AIV+ R Sbjct: 157 HNGPLDMRMDCGRSGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARGALQR 216 Query: 185 FQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT+ L+ L+ + + H AT++FQALRIFVNNE+ E+ G+ A++ L Sbjct: 217 IETTRQLAELVASVLGDGQRQDKLQRPAHLATKTFQALRIFVNNELNEINYGMLLAQEYL 276 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVFQ 286 +A G L+ ++FHSLED +VK+ + +A + H + +Q Sbjct: 277 RAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDITHDPALLESFVQSNWQ 336 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + V++P ++A N RSRSAKLRA ++ Sbjct: 337 QLHRHVILPDATEIASNSRSRSAKLRAAIKIK 368 >gi|306836499|ref|ZP_07469470.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49726] gi|304567589|gb|EFM43183.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49726] Length = 346 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 165/321 (51%), Gaps = 24/321 (7%) Query: 20 HVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 HVPV+ E++ LL PG V++DAT GAGG+S F + VI +DRD A Sbjct: 16 HVPVMRERMAELL--RPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQA 73 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQID 119 + + + +F A F + + D G+ G +FDLGVSSMQ+D Sbjct: 74 LQNASARLEPFGPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLD 133 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGF+++ PLDMRM G++A+DV+N + DL RIL G+E+ A +IA A++K Sbjct: 134 QAERGFAYKTDAPLDMRMDPSHGLTAADVLNSYSHGDLARILKTYGDERFAGKIASAVLK 193 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E + L Sbjct: 194 EREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITS 253 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL G + +S+ SLEDRLVK F S + F ++T+ +Q Sbjct: 254 ALSIGARAVFMSYQSLEDRLVKAAFKELSTSTTPAGLPMDLPGTAPEFATVTRGAEKASQ 313 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +V N R+ S ++RA R Sbjct: 314 AEVEENSRAASVRVRALERLE 334 >gi|311742808|ref|ZP_07716616.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272] gi|311313488|gb|EFQ83397.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272] Length = 325 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 183/317 (57%), Gaps = 12/317 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCKMGS--NVIALDRD 67 HT HVPV L++V+ LL PA D T G GG++ + + V+ +DRD Sbjct: 9 HTRPSHVPVALDRVLDLLAPAVEAAGEAAVVVDTTLGLGGHTAAMLQRFPDLRVVGIDRD 68 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 P A+ E + D + +L A + ++ D + + + VDGV+FDLGVSSMQ+D G+RG Sbjct: 69 PDALRLAAERLADVAGRVTLVHAVYDRIADALDEAGVERVDGVLFDLGVSSMQLDVGERG 128 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ + PLDMRM + GI+A++V+N DL R+L GEEK A RIA A+V R Sbjct: 129 FAYAQDAPLDMRMDPTTGITAAEVLNTYAAGDLARVLRTYGEEKFARRIADAVVAERDEH 188 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF T+ L L+++++ + + +PA R+FQALRI VN+E+ + L +A AL+ G Sbjct: 189 PFDTSPRLVDLVRRSIPAAARRTGGNPAKRTFQALRIEVNDELGAYERALPAALSALRPG 248 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+++HSLEDR+ K+ FA + + H A F+S+T+ + + ++ Sbjct: 249 GRVVVLAYHSLEDRITKRTFARITTTQVPRDLPFVPAGHAAEFRSLTRGAELASPAEIDE 308 Query: 303 NRRSRSAKLRAGMRTVE 319 N R++S +LRA R Sbjct: 309 NPRAQSVRLRAVERIAA 325 >gi|320093982|ref|ZP_08025809.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 178 str. F0338] gi|319979088|gb|EFW10604.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 178 str. F0338] Length = 355 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PVLL++ + +L PA PG V++DAT G GG++ + + I +DRDP AV+ Sbjct: 40 HTPVLLDECLDMLAPAIEGPGSVLIDATLGMGGHTEGALRRFPGLVVIGIDRDPEAVALA 99 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG----VVFDLGVSSMQIDCGDRGFSFQKS 130 + + + +F +AT+ + V D G V+ DLGVSS+Q+D +RGFS+ + Sbjct: 100 SKRLEGFGPRFLAVRATYDSIGQVVADHAPRGEADGVLMDLGVSSLQLDDAERGFSYSQD 159 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G+SA++++ A +++TRIL GEE+ A RIA +V RR + P T Sbjct: 160 APLDMRMDPTRGVSAAELLATAPQEEITRILRAYGEERFAPRIARLVVARRGAQPLTRTG 219 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++++ + + +PA R+FQALR+ VN+E+ L + L +A +L+ GG L+V Sbjct: 220 QLVDIVREAIPAPARRTGGNPAKRTFQALRVAVNDELAILERALPAALASLRVGGRLVVE 279 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLEDR+VK S + + +T+ + N RS S Sbjct: 280 SYQSLEDRIVKNVLRGGSTVSAPPGLPVVPDEARPRLALLTRGAGRAPASEQEKNPRSAS 339 Query: 309 AKLRAGM 315 +LR Sbjct: 340 VRLRGAE 346 >gi|237785335|ref|YP_002906040.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM 44385] gi|263446144|sp|C4LI42|RSMH_CORK4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237758247|gb|ACR17497.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 390 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 175/331 (52%), Gaps = 23/331 (6%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSN- 60 + H HVPV+LE+++ L+ P + VILD T GAGG++ SF + + Sbjct: 1 MADRHTGTHGHVPVMLERMVELIAPTVTESSENSAPSVILDGTLGAGGHTESFLERFPSA 60 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVV 108 VI +DRD +S E + ++++F A F + + D G+ Sbjct: 61 MVIGVDRDKKELSRTTERLSRFQDRFYPVHARFDNFDEALDDADHPVVDAFDAHGLSAGF 120 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D DRGF+++ GPLDMRM +G +A+DV+N + +L RIL G+E+ Sbjct: 121 FDLGVSSMQLDQVDRGFTYRDDGPLDMRMDTSTGKTAADVLNTYSHGELARILKTYGDER 180 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226 A +A AIV+ R+ P+ T+Q L LI T+ S + + HPA R+FQALR+ VN E++ Sbjct: 181 FAGPLARAIVREREKEPWSTSQRLVDLIYATIPASARRHGGHPAKRTFQALRVEVNAELD 240 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L + + L GG + +S+ SLED++VK+ A+ + I F Sbjct: 241 ALRRVIPKVCSYLHLGGRAVFMSYQSLEDKIVKRELAALTESKTPPGLPIDLPNSAPDFH 300 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +T+ +++ N R+ S ++RA RT Sbjct: 301 LVTRGSEKADEQENNKNPRAHSVRVRAVERT 331 >gi|187918180|ref|YP_001883743.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH] gi|263445877|sp|B2S017|RSMH_BORHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119861028|gb|AAX16823.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH] Length = 297 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVLL+++I LL G + +D T G GG+S + + N VI ++RD ++ Sbjct: 6 HTPVLLDEIINLLEIVYVNDGFIFVDCTLGEGGHSSAVLRKYQNISVIGIERDDIILNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E + ++K + S F A F +Y + ++ DLG+S RGFSF + L Sbjct: 66 KEFLVEFKGKVSYFNAWFDDFFSEYSLSSKANFILADLGISMFHYKMSGRGFSFFEDERL 125 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR++ G+SA D+VN + L ++ G E + RI +I++ R+ +T+++L Sbjct: 126 DMRLNPGAGGLSAYDIVNTFDKVRLENLIYEFGGEHYSKRIVSSILEYRKIKKIKTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K K +I+PAT++FQALRI+VN+E+ L + L +L G+L +++FH Sbjct: 186 QGIISKAYPRIK-LKINPATKTFQALRIYVNDELFRLKRSLPLWVGSLSRNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF S + +TKK ++ + E+ N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLSKEQYC---------------ILTKKPIIASFEEKRCNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAIRKLYE 297 >gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] gi|108878145|gb|EAT42370.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] Length = 357 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 127/330 (38%), Positives = 180/330 (54%), Gaps = 31/330 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPV+ + I L P ++ LD TFGAGG+++ K + +IALDRDP A Sbjct: 28 HVPVMATETIKFLKPQDNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAM 87 Query: 78 MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FS+L + V + +DG++FD G SSMQ D G RGFS K+GP Sbjct: 88 AKKYPGQIFPILGRFSELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGP 147 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187 LDMRM SA++++ + + DL RIL I GEEKQA +IA AIV+ R +T Sbjct: 148 LDMRMDQDRFPDTPSAAEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIET 207 Query: 188 TQDLSSLIQKTVY------FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T++L+ ++Q + HPAT++FQALRIFVNNE+ E+ G+ A++ LK Sbjct: 208 TKELADIVQSCLGSGSFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQRYLKI 267 Query: 242 GGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSI 288 GG +I ++FHSLED +VK+ ++ H + N + + Sbjct: 268 GGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENVMKTSWHQM 327 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 TK VV+P ++V N RSRSAKLRA +R Sbjct: 328 TKHVVLPGDDEVEQNPRSRSAKLRAVVRVA 357 >gi|255082159|ref|XP_002508298.1| predicted protein [Micromonas sp. RCC299] gi|226523574|gb|ACO69556.1| predicted protein [Micromonas sp. RCC299] Length = 363 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 23/310 (7%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74 HVPVL+ +V+ + + +D T GAGG++ + + + + D Sbjct: 65 APHVPVLMRQVLDAFDGRSLRCYVDGTMGAGGHASAIIRAHPELRTFVGFDL-------- 116 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + F + ++LQ + D GVD ++ DLGVSSM +D +RGFSF GPLD Sbjct: 117 --RIHTVQSNFRHMRERLAELQ--LADGGVDAILMDLGVSSMHLDTPERGFSFMNDGPLD 172 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +SA+DVVN+ +++ R++ GEEK +A I R AP +TT+ L Sbjct: 173 MRMGPSAKMSAADVVNEWPEEEIARVIRDYGEEKHWRLLARRICDARGIAPIETTRQLVH 232 Query: 194 LIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + V ++ IHPATR+FQ +RI VN E+ + + + +A AL GG L +++FH Sbjct: 233 ALGRIPGVKKGRSGGIHPATRTFQGIRIAVNEELAVVEEAIPAAVDALAPGGRLAIITFH 292 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-----IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLED+LVK+ F + +G A A P + + +T+K VV ++V N RS Sbjct: 293 SLEDKLVKRAFRTFAGIAPASDRPLSAWEPQPEAPPKIVKLVTRKPVVADDDEVGANARS 352 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 353 RSAKLRVCEK 362 >gi|162148953|ref|YP_001603414.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] gi|209545294|ref|YP_002277523.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] gi|263455983|sp|A9H0G9|RSMH_GLUDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161787530|emb|CAP57126.1| S-adenosyl-methyltransferase mraW [Gluconacetobacter diazotrophicus PAl 5] gi|209532971|gb|ACI52908.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 115/298 (38%), Positives = 165/298 (55%), Gaps = 14/298 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE-- 76 H+PV+L +V+ +L P G LD TFG GGY+R+ + A+DRDP A+ GQ Sbjct: 9 HIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQ 68 Query: 77 ---TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + Q F +Q + + +DGVV DLGVSS Q+D +RGFSF+ Sbjct: 69 AELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTD 128 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM +G +A+D+VN DL I+ GEE+ + R+A AIV R AP TT Sbjct: 129 GPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQ 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ V + + I PATRSFQ +RI VN+E+ ++ GL A L GG L+VVSF Sbjct: 189 LADIIRSVVPGDR-SGIDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNR 304 HSLEDRLVK+ +G++ P + F+ +T + + P + + N Sbjct: 248 HSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPDFRLLTSRALRPGETECRANP 305 >gi|327540391|gb|EGF26977.1| S-adenosyl-methyltransferase MraW [Rhodopirellula baltica WH47] Length = 325 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 157/318 (49%), Gaps = 33/318 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRD 67 +HV V+ +++ + I+D T+G GG++R ++ VIA+DRD Sbjct: 25 QTEHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGADSDTPRVIAIDRD 84 Query: 68 PFAVSCGQE--TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 P V ++ ++D E F + + D + D +V DLG+SS Q+ +R Sbjct: 85 PAVVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNR 144 Query: 124 GFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRR 180 GF+F +G+ A + Q + K++ + GEE+ + RIA I + R Sbjct: 145 GFTFTIDDAELDLRFDPENGVPAYRWLQQHSEKEIADAIYQFGEERFSRRIAKQIFLRAR 204 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + P +L + ++ V S+N+ IHPATR+FQALRI VN+E+ L + L+SA + Sbjct: 205 ERNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIA 264 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+SFHSLEDR+VK F ++ +TKK + PT E+V Sbjct: 265 PGGRVAVISFHSLEDRIVKNAFRE-----------------DHRWEILTKKPLRPTDEEV 307 Query: 301 AFNRRSRSAKLRAGMRTV 318 N RSRSAKLR R Sbjct: 308 QANPRSRSAKLRVAKRVE 325 >gi|227503272|ref|ZP_03933321.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49725] gi|227075775|gb|EEI13738.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49725] Length = 346 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 164/321 (51%), Gaps = 24/321 (7%) Query: 20 HVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 HVPV+ E++ LL PG V++DAT GAGG+S F + VI +DRD A Sbjct: 16 HVPVMRERMAELL--RPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQA 73 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQID 119 + + + +F A F + + D G+ G +FDLGVSSMQ+D Sbjct: 74 LQNASARLEPFSPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLD 133 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGF+++ PLDMRM G++A+DV+N + DL RIL G+E+ A +IA A++K Sbjct: 134 QAERGFAYKTDAPLDMRMDPSHGLTAADVLNTYSHGDLARILKTYGDERFAGKIASAVLK 193 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E + L Sbjct: 194 EREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITS 253 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL G + +S+ SLEDRLVK F S + F ++T+ + Sbjct: 254 ALSIGARAVFMSYQSLEDRLVKAAFKDLSTSTTPAGLPMDLPGTAPEFATVTRGAEKASA 313 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +V N R+ S ++RA R Sbjct: 314 AEVEENSRAASVRVRALERLE 334 >gi|150021597|ref|YP_001306951.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429] gi|262825837|sp|A6LNR5|RSMH_THEM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149794118|gb|ABR31566.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429] Length = 291 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 30/307 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H+PVL +V+ L + +D T G GG++ K S VIA+D D + Q+ Sbjct: 7 KHIPVLPNEVVEYLLWKDNGIYVDCTAGEGGHTFLIAKKCPNSRVIAIDVDLEVLEIAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + L +A++ L + + V G++ DLG+S+ Q+ RGFSF + PL Sbjct: 67 NLKAFHN-VILLKASYVDLPVVLKSLGIERVSGILADLGISTYQLKAEGRGFSFNRDEPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA + N + + L++I+ GEE+ A RIA I ++ P TT++L Sbjct: 126 DMRMDIQQDTSAHKITNFYSEEKLSKIIFKYGEERFARRIAKQI---VKNRPINTTKELV 182 Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + + H AT++FQA+RI VN E++ + Q L++AE+ L+ GG L ++SF Sbjct: 183 EIIKKALPPSEIRKRKRHFATKTFQAIRIEVNKELKNIEQLLKNAEELLEIGGRLAIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F + + + PTQE+ N R+RSAK Sbjct: 243 HSLEDRIVKHFIKNSNNLKHIA------------------GPIKPTQEETKNNPRARSAK 284 Query: 311 LRAGMRT 317 LR R Sbjct: 285 LRVAERI 291 >gi|149409519|ref|XP_001510902.1| PREDICTED: similar to androgen receptor associated coregulator 267-b [Ornithorhynchus anatinus] Length = 436 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 131/335 (39%), Positives = 177/335 (52%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HVPV++ +V+ L P G+ ILD TFG+GG++R+ + ALDRDP A Q+ Sbjct: 101 HVPVMVNEVVNCLAPQQGQSILDMTFGSGGHARAILHKEPGITLYALDRDPSAYKIAQQL 160 Query: 78 MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FSQ + V + +DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 161 SQTYPNQVRALLGQFSQAETLLLSAGVQPESLDGVLLDLGCSSMQLDTPERGFSLRKDGP 220 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A DVVN + + LT IL GEE+ A +IA AIV+ R P T Sbjct: 221 LDMRMDSGRYPDLPTAGDVVNALDQQALTSILRTYGEERHAKKIASAIVQARTIYPITRT 280 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQA+RIFVN+E+ EL GL++A+K L+ Sbjct: 281 QQLASIVAGAFPDSALYARKDLLQRSTHIATKTFQAIRIFVNDELNELYAGLKTAQKFLR 340 Query: 241 AGGLLIVVSFHSLEDRLVKKFFAS-----------RSGKVMAVRHMIPSNAHP------- 282 GG L+ +SFHSLEDR+VK+F R R + Sbjct: 341 PGGRLVALSFHSLEDRVVKRFLFKIDITEKFNLSRRKKITQVQRGNVDRENEEESSSDMS 400 Query: 283 -AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +Q I KKV+ P +DV N R RSAKLRA ++ Sbjct: 401 HPEWQMIHKKVLTPDTQDVQENPRGRSAKLRAAIK 435 >gi|296117529|ref|ZP_06836113.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM 20306] gi|295969260|gb|EFG82501.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM 20306] Length = 363 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 175/326 (53%), Gaps = 21/326 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALD 65 I+ G HVPV+ ++ L+ PA +I+D T GAGG++ F + VI +D Sbjct: 25 INDNHG-HVPVMRARMAELIAPAVEAAGENAIIIDGTLGAGGHTEYFLQNFPQARVIGVD 83 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQL-----------QDYVPDKGVDGVVFDLGVS 114 RD +++ E + + ++F F ++ + GV G +FDLGVS Sbjct: 84 RDAASLAEAGERLSPFADRFVGVNERFDEIGSAIAEGDGEVFEIARQHGVAGALFDLGVS 143 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D DRGF+++ PLDMRM S GI+A+DV+N + +L IL + G+E+ A +IA Sbjct: 144 SMQLDQADRGFAYKVDAPLDMRMDPSAGITAADVLNTYSHGELAHILKMYGDERFAGKIA 203 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 A++K R PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E + Q + Sbjct: 204 SAVLKERDKQPFDTSARLVELLYNTIPAATRRTGGHPAKRTFQALRVEVNGELEAIEQVI 263 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 AL GG ++ +S+ SLED+LVK F + + + A F++IT+ Sbjct: 264 PVITSALNIGGRVVFMSYQSLEDKLVKSTFKTLTTSSTPAGLPMDLPGTAAHFKTITRGS 323 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTV 318 T+ ++A N R+ S ++RA R Sbjct: 324 EKATEAEIAENPRAASVRVRAFERLA 349 >gi|260905297|ref|ZP_05913619.1| S-adenosyl-methyltransferase MraW [Brevibacterium linens BL2] Length = 320 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 169/314 (53%), Gaps = 15/314 (4%) Query: 20 HVPVLLEKVIALL-----NPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+V+ L+ +++D T G GG+S + ++I +DRD Sbjct: 5 HVPVLLERVVELIGVGVQAARDNGHPPIVVDGTLGMGGHSEAVLTAFPDVHLIGVDRDTQ 64 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + + ++ + A ++ + + D + V+ DLGVSS+Q+D +RGFS Sbjct: 65 AIDIATKRLAPFVDRTDIVHAVDDEIPEILDDLGVDRISAVLLDLGVSSLQLDEDERGFS 124 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM ++A++V+ +L RIL GEEK A RIA+ IV R++ P+ Sbjct: 125 YSRPAPLDMRMDRTQSLTAAEVLATYPEAELRRILREYGEEKMAGRIANIIVTDRETTPW 184 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T+Q L++++ + + +K + HPA R+FQALRI VN+E+ L L A +AL GG+ Sbjct: 185 ETSQQLAAMLSRVLPQTKK-KSHPAKRTFQALRIEVNDELGVLRTALPEALRALHLGGVA 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++ S+ SLED +VKK F + + + I + + ++ N R Sbjct: 244 VIESYQSLEDTIVKKIFRAGTSTSAPPDMPVVPEELQPWLSEIIRGAELADSDEADRNPR 303 Query: 306 SRSAKLRAGMRTVE 319 ++S +LRA + E Sbjct: 304 AKSVRLRAVQKIRE 317 >gi|32475279|ref|NP_868273.1| methyltransferase [Rhodopirellula baltica SH 1] gi|42559448|sp|Q7UFX8|RSMH_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|32445820|emb|CAD78551.1| conserved hypothetical protein-putative methyltransferase [Rhodopirellula baltica SH 1] Length = 325 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 33/317 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRDP 68 +HV V+ +++ + I+D T+G GG++R ++ VIA+DRDP Sbjct: 26 TEHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGSDSDTPRVIAIDRDP 85 Query: 69 FAVSCGQE--TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 V ++ ++D E F + + D + D +V DLG+SS Q+ +RG Sbjct: 86 AVVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRG 145 Query: 125 FSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQ 181 F+F +G+ A + Q + K++ + GEE+ + RIA I + R+ Sbjct: 146 FTFTIDDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARE 205 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +L + ++ V S+N+ IHPATR+FQALRI VN+E+ L + L+SA + Sbjct: 206 RNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAP 265 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+SFHSLEDR+VK F ++ +TKK + PT E+V Sbjct: 266 GGRVAVISFHSLEDRIVKNAFRE-----------------DHRWEILTKKPLRPTDEEVQ 308 Query: 302 FNRRSRSAKLRAGMRTV 318 N RSRSAKLR R Sbjct: 309 ANPRSRSAKLRVAKRVE 325 >gi|15835162|ref|NP_296921.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg] gi|270285334|ref|ZP_06194728.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg] gi|270289350|ref|ZP_06195652.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Weiss] gi|301336731|ref|ZP_07224933.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum MopnTet14] gi|20139249|sp|Q9PKC2|RSMH_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|7190584|gb|AAF39384.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 302 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 158/315 (50%), Gaps = 25/315 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFQDQHPTTFCDVTVGAGGHAEAFLTSFPSIEHYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ ++ + +K + L A+F ++ PD DGV+ DLGVSSMQ+ +RGF Sbjct: 56 RDLSALALSEKRLLPFKGRVCLRHASFDEVNALTPDGMYDGVLADLGVSSMQLTDLERGF 115 Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + GI+AS+V+N +++ I GEE A+A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGITASEVLNSLREEEIGEIFRKYGEEPLWRSAANAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSALRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L ++SF SL+DR VK F + + +TKKV++PT E+ Sbjct: 236 GRLAIISFCSLDDRPVKWAFREAEARGE--------------GRVLTKKVIMPTYEETRK 281 Query: 303 NRRSRSAKLRAGMRT 317 N RSRSAKLR ++ Sbjct: 282 NPRSRSAKLRCFEKS 296 >gi|120609507|ref|YP_969185.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1] gi|263433318|sp|A1TKC3|RSMH_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120587971|gb|ABM31411.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1] Length = 311 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 160/304 (52%), Gaps = 15/304 (4%) Query: 26 EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78 ++ + L PAP V +DATFG GG+SR + ++A D+DP A+ Sbjct: 15 DEAVDALLGGAGPAPAGVWIDATFGRGGHSRRILERLGPDGRLVAFDKDPEAIHEAARI- 73 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +FS+ F L D ++ G++ DLGVSS QID +RGFSF+ GPLDMRM Sbjct: 74 --TDARFSIRHEGFRHLADLP-ERSAAGILMDLGVSSPQIDSPERGFSFRFDGPLDMRMD 130 Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G S +D + A+V + ++ GEE+ A IA AI RR T + + Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 ++ +PATR+FQALRIF+N E+EEL L ++ + L GG L V+SFHSLEDR+ Sbjct: 191 GAVKTREAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+F A S +V R + P +++ + + P +V N R+RSA +R RT Sbjct: 251 VKQFIAQHSREV-YDRRAPFAAPQPMRLKALDR--IKPGACEVDANPRARSAVMRVAERT 307 Query: 318 VERS 321 + Sbjct: 308 EVPA 311 >gi|227543126|ref|ZP_03973175.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51866] gi|227181114|gb|EEI62086.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51866] Length = 354 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 20/325 (6%) Query: 15 HTIGDHVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 HVPVL ++++ LL + +D T GAGG++ + VI +DRD Sbjct: 26 QENHGHVPVLRDRMVELLRRGIAVDGATGIAVDGTLGAGGHTEHLLATDPNARVIGVDRD 85 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSM 116 A+ + + ++F F + + +FDLGVSSM Sbjct: 86 AQALKDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSM 145 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF+++ PLDMRM GI+A+DV+N + DL R+L GEEK A +IA A Sbjct: 146 QLDQEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASA 205 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +++ R+ PF + L L+ T+ + + HPA R+FQALR+ VN E+ L Q + Sbjct: 206 VIREREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPV 265 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 AL GG+++ +S+ SLED++VKK A + + F +T+ Sbjct: 266 TADALHVGGVMVFMSYQSLEDKIVKKALARLTTSTNPPGLPVDLPGTEPHFALVTRGSEK 325 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 +++++ N R+ S ++RA R + Sbjct: 326 ASKKEIDQNPRAASVRVRAAQRVLN 350 >gi|152967151|ref|YP_001362935.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans SRS30216] gi|263456185|sp|A6WCY2|RSMH_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151361668|gb|ABS04671.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans SRS30216] Length = 391 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 108/313 (34%), Positives = 166/313 (53%), Gaps = 10/313 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 H H V+LE+ +L+PA PG V +D T G GG++ + ++ +DRDP Sbjct: 22 HDAARRHASVMLERCTRVLSPALDHPGAVTVDVTLGMGGHAHELLRRHPGLRLVGMDRDP 81 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + ++ ++ +L + L + + D VD V FDLGVSS+Q+D +RGF Sbjct: 82 QALELAAHRLHEFADRITLVHSVSDGLGEALDDLGLDTVDAVFFDLGVSSLQLDEAERGF 141 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ + LDMRM + +A+DV+N + LTRIL + GEE+ A RIA AIV+ R P Sbjct: 142 SYARDTALDMRMDPGAPTTAADVLNTYSHSQLTRILRVYGEERFAPRIASAIVRERALEP 201 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F ++ L L++ V ++ +PA R+FQALRI VN+E+ + + L A + L G Sbjct: 202 FTSSARLVDLVRANVPAATRRTGGNPAKRTFQALRIEVNDELGVVERSLPVAFERLAPEG 261 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V++FHSLEDR+VK S + +T+ + ++A N Sbjct: 262 RLAVLTFHSLEDRIVKNALRELSSSSAPPDLPFVPAGSGPRAELLTRGGETADEAELAEN 321 Query: 304 RRSRSAKLRAGMR 316 R+ SA+LRA R Sbjct: 322 PRAASARLRAVRR 334 >gi|87123572|ref|ZP_01079423.1| methyltransferase [Synechococcus sp. RS9917] gi|86169292|gb|EAQ70548.1| methyltransferase [Synechococcus sp. RS9917] Length = 305 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 31/316 (9%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIAL 64 + HVPVL + ++ L ++LDAT G GG+SR + ++I L Sbjct: 6 STSAQAFSHVPVLADVLLQALQEHADPRWQQGLLLDATLGGGGHSRLLLEHYPGLHLIGL 65 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 D+D A + E + E+ + F+ Y P++ V ++ DLGVSS Q+D +RG Sbjct: 66 DQDSTARAAAAEHLLPCAERVRIVATNFA---TYRPEEPVALLLADLGVSSPQLDVAERG 122 Query: 125 FSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RR 180 FSF+ +GPLDMRM+ G +A++++ + DL ++ GEE+ + RIA I Sbjct: 123 FSFRHNGPLDMRMNPEGGGETAAELIARLEESDLADLIYAYGEERLSRRIARRIKADLAA 182 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q A T ++ ++ RIHPATR+FQALRI +N+E+ L + L +A L+ Sbjct: 183 QGAYAGTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAINDELGVLDKLLSAAPDWLQ 242 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GGLL ++SFHSLEDR VK F + IT++ +V ++++ Sbjct: 243 PGGLLAIISFHSLEDRRVKTAF-----------------LQDQRLERITRRPLVASEQEQ 285 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 286 ERNPRSRSAKLRIARR 301 >gi|159902730|ref|YP_001550074.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|226709923|sp|A9BD32|RSMH_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159887906|gb|ABX08120.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 305 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 170/317 (53%), Gaps = 30/317 (9%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVI-----LDATFGAGGYSRSFCKMGS--NVIALD 65 + + +H PVL ++I ++ P +I +DAT G GG+S + +VI LD Sbjct: 7 VATSTFNHTPVLANELIEIIKKLPEDLIKNCLIIDATIGGGGHSSLVLETFPGISVIGLD 66 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP AV+ E ++ + ++ + FS + P K V V DLGVSS Q+D G RGF Sbjct: 67 QDPKAVAAASEHLKIFGDRAKIETTNFSN---FTPSKKVAMVFADLGVSSPQLDEGSRGF 123 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182 SF+ +GPLDMRM+ G +A++++++ + +L ++ GEE+ + RIA I +Q Sbjct: 124 SFRLNGPLDMRMNQIDGTNAAELIDRLSENELANLIFKYGEERFSRRIAKRIKHDLAKQG 183 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T ++ +N R+HPAT++FQALRI +N+E++ L+ L+ A + L Sbjct: 184 PYSGTIALAYAIAGCYPPKLRNRRVHPATKTFQALRIAINHELDVLSVLLKKAPEWLLDD 243 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 GL V+SFHSLEDRLVKK F + IT+K ++ T +++ Sbjct: 244 GLFAVISFHSLEDRLVKKSF-----------------LTDTRLERITRKPLIATTNEISI 286 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAK+R R Sbjct: 287 NPRSRSAKMRVARRIEA 303 >gi|195444651|ref|XP_002069965.1| GK11803 [Drosophila willistoni] gi|194166050|gb|EDW80951.1| GK11803 [Drosophila willistoni] Length = 368 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 123/335 (36%), Positives = 171/335 (51%), Gaps = 32/335 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 + HVPVL E I LNP LD TFGAGG++R V ALDRDP A Sbjct: 34 SSSPHVPVLCEVAIEYLNPKRNGNYLDMTFGAGGHTRRLLDTCSDCKVYALDRDPLAHQL 93 Query: 74 GQET--MRDYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFS 126 E +YK + FS L + DG+++D G SSMQ D +RGFS Sbjct: 94 AIEMSQKEEYKGRLVPLFGKFSDLPQLLDGQNLSRNSFDGMLYDFGCSSMQFDVANRGFS 153 Query: 127 FQKSGPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QS 182 ++GPLDMRM SA+DV+ +A DL RIL + GEEK A +IA AIV+ R Sbjct: 154 ISQNGPLDMRMDGGRGGGISAADVLARAEEDDLARILRVYGEEKAAKKIARAIVEARGAL 213 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +TT+ L+ L+ + S + + H AT++FQALRIFVNNE+ E+ G+ A Sbjct: 214 QRIETTKQLADLVAAVLGDSSHRQDKLQRPSHAATKTFQALRIFVNNELNEINYGMLLAN 273 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PA 283 + L G L+ ++FHSLED +VK+ + A + H Sbjct: 274 EVLCPEGRLVAITFHSLEDTIVKRHLNGNVIEGRANPVPLKYCGHDVTLDPQLMQSFVQI 333 Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 ++ + + V++P E++A N RSRSAKLRA ++ Sbjct: 334 KWRQLHRHVILPDAEEIARNSRSRSAKLRAAIKIK 368 >gi|217076157|ref|YP_002333873.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B] gi|262825832|sp|B7IEL8|RSMH_THEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217036010|gb|ACJ74532.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B] Length = 291 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 28/306 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PV+ ++VI L + +D T G GG++ + + VI LD D ++ ++ Sbjct: 7 KHIPVMPKEVIEHLIWKKDGIYVDCTVGEGGHTLLLASISPDIFVIGLDIDSEVLNIAEK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + F + + + V G++ DLG+S+ Q+ RGF+F + PLD Sbjct: 67 NLSSFTNVKLFKSSYVDLPVVLKALNIEKVSGILIDLGISTYQLKAEGRGFTFNRDEPLD 126 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ +A DVVN + K+L I+ GEE+ + RIA +IV R P +T +L Sbjct: 127 MRMNLEQKKTAYDVVNFYSEKELADIIFKYGEERFSRRIARSIVNSR---PINSTLELVE 183 Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I+K + + + H AT++FQA+RI VN E+ + L + L+ GG L V+SFH Sbjct: 184 AIRKALPPQEIRKRKRHFATKTFQAIRIEVNGELSNIENFLNNVPDLLEIGGRLAVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + V ++P++E++ N R+RSAKL Sbjct: 244 SLEDRLVKHFIKNSNKLRQIV------------------GPIIPSKEEIDENPRARSAKL 285 Query: 312 RAGMRT 317 R R Sbjct: 286 RIAERI 291 >gi|195953230|ref|YP_002121520.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1] gi|263456148|sp|B4U8T1|RSMH_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|195932842|gb|ACG57542.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1] Length = 296 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 27/313 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 H VLL++V L+ K+ +DAT G GG++++ + + +I +D+D A+ +E Sbjct: 1 MHKSVLLKEVTDFLSNPCPKIHIDATLGLGGHAKALLEVCKDTFLIGIDKDENAIEIAKE 60 Query: 77 TMRDYKEQFSL-FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ + F F + D ++FD GVSS+Q+D + GFSFQ+ LDM Sbjct: 61 KLKGFNAVFYHGSFKDFDIVLKEEGLLYFDSILFDFGVSSLQLDEEE-GFSFQREDFLDM 119 Query: 136 RMSCSGISASDV-VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + + +N K+L I GEE+ + +IA +IV++R+ P +TT++L + Sbjct: 120 RMDKRQQKTAYIVINTYKEKELADIFYKYGEERLSKKIARSIVEKRKKKPIETTKELVDI 179 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + Y K ++I+PAT+ FQALRI VN+E+E++ L K G +SFHSLE Sbjct: 180 VSSC-YPYKYSKINPATKVFQALRIEVNSELEDIKIALSKLLDFAKEGSKFAFISFHSLE 238 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DRLVK+F + + K + +KK + P+ E++ +N+R+RSAKLR Sbjct: 239 DRLVKEFIKNNADK----------------LKVCSKKPITPSDEELLYNKRARSAKLRCA 282 Query: 315 -----MRTVERSI 322 + E Sbjct: 283 KLCYNEKKDEAFD 295 >gi|295111738|emb|CBL28488.1| S-adenosyl-methyltransferase MraW [Synergistetes bacterium SGP1] Length = 303 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 25/311 (8%) Query: 17 IGDHVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + H PVLL +V++ L+ P I+D T G GGYS + + V +DRDP A Sbjct: 1 METHEPVLLPEVLSFLSEASEPRRALRIVDGTLGLGGYSEAILRAFPDGRVWGVDRDPDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + +F A F + + D VFDLGVS++Q+ RGFSFQ+ Sbjct: 61 LRLAKGRLSAFAPRFCAVHANFGDIAGVLEGEAPFDAFVFDLGVSNLQLTEAARGFSFQQ 120 Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQ 186 GPLDMRM G SA++V++ + +L RI G+E+ + RIA+ I +R + + Sbjct: 121 DGPLDMRMDPGGGAPSAAEVLSGLSADELARIFWEYGDERYSRRIANGIIQRRARGLRLE 180 Query: 187 TTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L +LI++ + + HPA R FQALRIFVN+E+ + L + G + Sbjct: 181 TTGELVTLIREVLPAPVQRKMGTHPARRVFQALRIFVNDELSAIESMLATLPTLAGEGCV 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +VVS+HSLEDR+VK F S + +++T+ ++P +E+ N Sbjct: 241 AVVVSYHSLEDRIVKHRFRSWEK-------------EKGLGRALTRHPLLPQEEERTRNY 287 Query: 305 RSRSAKLRAGM 315 RSRSAKLRA Sbjct: 288 RSRSAKLRAFR 298 >gi|291278991|ref|YP_003495826.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1] gi|290753693|dbj|BAI80070.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1] Length = 306 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 H PVL ++I+ VI+D T G GG++ K +I LDRD A+ E Sbjct: 1 MHKPVLYNELISFFKGLKNGVIVDCTGGGGGHAEGILKEIKPERLIILDRDEDAIKRLNE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++++ FS++ + + V+G+ D GVS+ + RGFSF+++GPL Sbjct: 61 KFKGMEN-VEIYKSNFSEIDSVLQSLKIEKVNGLYADFGVSNFHLLDSKRGFSFRRNGPL 119 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A VVN+ + + L I GEE+ AS+IA AIVK R+S TT +L+ Sbjct: 120 DMRMDKSLYLTAEKVVNEYSAETLKNIFRKFGEERFASKIADAIVKTRKSKRITTTLELA 179 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + + +HPAT+ F ALRIF+NNE+E + L+ + GG++ +SFH Sbjct: 180 EIVKNAIPERFHKPGVHPATKVFMALRIFINNELESIESLLKKLPTIVDKGGIVAFISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK++ + + F+ +TKK + PT++++ N SRSAK Sbjct: 240 SLEDRLVKEYLQYYEKSCICPPDYPVCNCDKEKQFKILTKKPITPTEKEITENPLSRSAK 299 Query: 311 LRAGMRT 317 +R G+R Sbjct: 300 MRVGVRV 306 >gi|154148181|ref|YP_001406384.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC BAA-381] gi|171769702|sp|A7I1J3|RSMH_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|153804190|gb|ABS51197.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC BAA-381] Length = 310 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL +V+ + +++D T G G+S + + A D+D A+ ++ Sbjct: 4 PHIPVLRNEVVDIFKDLQ-GLLIDCTLGFAGHSSAILSANENIRIFACDKDDEALDFSKK 62 Query: 77 TMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +K + +F++ FS + + V G++ D+GVSS+QID DRGFS + Sbjct: 63 RVEIFKNRIKIFKSGFSNFLPFLETNEILNLSNVVGILADIGVSSLQIDNNDRGFSLKSD 122 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 + + A VVN + DL RI E A +IA I R + ++ Sbjct: 123 ALDMRMDKNASLDAKFVVNHYSRSDLERIFYEFAELTNAKQIAAKIANYRADKEITSAKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+++I + KN I AT +FQA+RI VN E++EL + L S E + + +++F Sbjct: 183 LATIIGTS--NFKNRSISTATLAFQAIRIEVNKELDELNKLLDSIENSAIQNAKIAIITF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLED++VK F + + + A+ + +TKK + + +++ N R++S Sbjct: 241 HSLEDKIVKNRFKKWAQSCICPPFFERCECGNNHAIGKILTKKPITASADELKQNSRAKS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVFE 307 >gi|15827426|ref|NP_301689.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae TN] gi|221229903|ref|YP_002503319.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae Br4923] gi|13092976|emb|CAC31287.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933010|emb|CAR71001.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 372 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 18/323 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 ++ HVPV ++ + LL PA +++DAT G GG++ F +I L Sbjct: 37 SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 96 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + G DGV+FDLGVSSMQ+ Sbjct: 97 DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 156 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 DC +RGFS+ + PLDMRM S +SA+D+VN + L IL GEE+ A RIA IV Sbjct: 157 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 216 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + + HPA R+FQALRI VN+E+ L+ L +A Sbjct: 217 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 276 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL G L+V+++ SLEDR+VK+ FA I H F+ +T+ Sbjct: 277 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 336 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++ N RS + +LRA RT Sbjct: 337 AAEIECNPRSAAVRLRALQRTQH 359 >gi|8134827|sp|O69560|RSMH_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460319|sp|B8ZQP2|RSMH_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3080481|emb|CAA18676.1| hypothetical protein MLCB268.10c [Mycobacterium leprae] Length = 340 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 18/323 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 ++ HVPV ++ + LL PA +++DAT G GG++ F +I L Sbjct: 5 SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 64 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + G DGV+FDLGVSSMQ+ Sbjct: 65 DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 124 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 DC +RGFS+ + PLDMRM S +SA+D+VN + L IL GEE+ A RIA IV Sbjct: 125 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 184 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + + HPA R+FQALRI VN+E+ L+ L +A Sbjct: 185 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 244 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL G L+V+++ SLEDR+VK+ FA I H F+ +T+ Sbjct: 245 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 304 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++ N RS + +LRA RT Sbjct: 305 AAEIECNPRSAAVRLRALQRTQH 327 >gi|283783556|ref|YP_003374310.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05] gi|298252636|ref|ZP_06976430.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis 5-1] gi|283442079|gb|ADB14545.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05] gi|297533000|gb|EFH71884.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis 5-1] Length = 345 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 165/318 (51%), Gaps = 11/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63 M+ A+ H PVLL+ + L+ P G +++D T G G++ +F K +I Sbjct: 1 MTDAMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60 Query: 64 LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118 +DRD A+S + MR +F A F ++ + + + +D + DLG+SS+QI Sbjct: 61 IDRDSEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLQENSIDRIDAAFMDLGLSSLQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177 D DRGFS+ LDMRM + + + + + ++LTRI GEE+ AS IA IV Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRELTRIFREYGEERFASPIARRIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + P T+ L SL+ + + +PA R FQALRI VN E+++L++ L Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSRTLPKIAL 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ G L+V S+HSLED VK+F + + + F+++T+ + ++ Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300 Query: 298 EDVAFNRRSRSAKLRAGM 315 E++ N RS S +LRA Sbjct: 301 EEIVHNTRSSSVRLRAVE 318 >gi|83816833|ref|YP_444696.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855] gi|123529490|sp|Q2S535|RSMH_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83758227|gb|ABC46340.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855] Length = 336 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 169/323 (52%), Gaps = 20/323 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVL V A L +DAT G GG++R+ + V+ +DRDP A+ ++ Sbjct: 24 HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D +E +F TF L+D + +DG++ DLGVSS QID +RGFSF+ G Sbjct: 84 RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G++A VVN +DL +L GEE +A +IA A+ R P TT+ Sbjct: 144 PLDMRMDPQRGLTAQQVVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + TR FQALRI VN E++EL Q L A + ++ GG + +S+ Sbjct: 201 LAEVVEDCAPP--PDTVKTLTRVFQALRIVVNAELDELEQVLEQATEVVRTGGRIAAISY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK++ + + R + + A + + + + +V N R+RSA Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGT--LVAPWAETPRGPIEAGESEVEANPRARSAH 316 Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333 LR R +D++ LP L Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335 >gi|255020004|ref|ZP_05292077.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC 51756] gi|254970533|gb|EET28022.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC 51756] Length = 324 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 14/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APG-KVILDATFGAGGYSRSF---CKMGSNV 61 M+ A T H PVLL +V+A P PG ++ +DAT G GG+S + + Sbjct: 1 MTDA-QDTDTSHQPVLLAEVLAACTPLLGQPGPRLWVDATGGRGGHSAALAHLLGAQDRL 59 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 + LDRDP A++ + + E+ S+ QA FS++ + + ++ DLGVSS Q+ Sbjct: 60 LVLDRDPGAIAFLRTRFAE-DERVSVRQAEFSRVAQVLAEMGTGQAQFILADLGVSSPQL 118 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF + GPLDMRM+ G+SA+ + A ++ ++L GEE++A RIA AIV Sbjct: 119 DRPERGFSFLRDGPLDMRMNPEQGMSAAQWLATAEAAEIAQVLRDYGEEREARRIARAIV 178 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R P T L+ L+ + ++ IHPATR+FQA+R+ +N+E+ E+ L +A Sbjct: 179 RERAVRPLTRTTQLAELVAGLLPRARAQAIHPATRTFQAIRMHINDELAEIRAFLPAAMD 238 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 +L G L V+SFHSLEDRLVK+FF + + + + A + + + + Sbjct: 239 SLGPDGRLAVISFHSLEDRLVKRFFRADTRQPDPDLPLRNWEIPEAPWFPLGR-ASRAST 297 Query: 298 EDVAFNRRSRSAKLRAGMRTVER 320 E+VA N R+RSA LR + + Sbjct: 298 EEVAHNPRARSATLRVAQKRGDP 320 >gi|289740101|gb|ADD18798.1| putative SAM-dependent methyltransferases [Glossina morsitans morsitans] Length = 381 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 120/334 (35%), Positives = 178/334 (53%), Gaps = 33/334 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73 + H PVL + I LNP P K+ +D TFGAGG+ + V ALDRDP A Sbjct: 46 SNSSHTPVLCAEAINYLNPGPQKIYIDMTFGAGGHCKKLLDSCKDIKVYALDRDPVAYEL 105 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ ++Y+ + + FS L + + VDG++FD G SSMQ + +RGFS Sbjct: 106 AQQMTKEYEGRLTPLLGRFSDLPHLLKEQNIVRHSVDGILFDFGCSSMQFEEPERGFSVS 165 Query: 129 KSGPLDMRMSC------SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQ 181 K+GPLDMRM C ++A+DV+ +A DL +IL I GEEK A +IA AI R Sbjct: 166 KNGPLDMRMDCAPGMNNDQVTAADVLARAEEPDLVKILRIYGEEKAAKKIARAIVDARSA 225 Query: 182 SAPFQTTQDLSSLIQKTVYFSK------NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P +TT+ L+ L+ ++ + H AT++FQALRIFVNNE+ E+ G+ A Sbjct: 226 LHPIKTTKQLADLVASCLHETPFRLDKLQRPTHVATKTFQALRIFVNNELNEINYGMVLA 285 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------------- 282 L+ G L+ ++FHSLED +VK+ +A + + Sbjct: 286 NAYLRLQGRLVAITFHSLEDTIVKRHLYGNVIDGLANPVPLKYCGYDVVHDEETMQSITL 345 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ + K V++P +E++ N RSRSAKLRA ++ Sbjct: 346 SNWKPLHKHVILPGEEEIKHNSRSRSAKLRAAVK 379 >gi|319778491|ref|YP_004129404.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis MCE9] gi|317108515|gb|ADU91261.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis MCE9] Length = 288 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 9/286 (3%) Query: 40 ILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +D TFG GG+SR S ++ D+DP A+ E+++ + + FS + Sbjct: 2 YVDGTFGRGGHSRYLLSLLDKNSKLVVFDKDPMAIEAA-ESLKKEDGRVLVVHGAFSTMS 60 Query: 97 DYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152 D + D VDG+ DLG+SS QID G RGFSF + GPLDMRM G++A++ + A+ Sbjct: 61 DVLSDFGITKVDGITMDLGISSPQIDDGTRGFSFMRDGPLDMRMDNSKGLTAAEWLASAD 120 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 V+ + +++ GEE+ A +IA AI RR+ P +TT +L+ LI ++ HPATR Sbjct: 121 VELIAKVIKEYGEERFAFQIAKAIASRREHNPIRTTHELAELI-AANVRTREKGQHPATR 179 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 +FQA+RI++N E+EEL++ L SA + LK GG L V+SFHSLEDR+VK+F A S Sbjct: 180 TFQAIRIYINEELEELSRSLTSAIELLKVGGRLSVISFHSLEDRIVKQFIAKESNPASEF 239 Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + + T++++ N RSRSA LR R Sbjct: 240 ARLPIREVDMPKGNLKSLGKLTATEDEILKNPRSRSAILRVAERIE 285 >gi|156551077|ref|XP_001602807.1| PREDICTED: similar to GA13173-PA [Nasonia vitripennis] Length = 426 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 125/335 (37%), Positives = 174/335 (51%), Gaps = 35/335 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PV+L++ I L +PG I+D TFGAGG+SR + +V ALDRD A + Sbjct: 94 HQPHTPVMLKETIEYLKLSPGDTIVDMTFGAGGHSRKILESVPHVTIFALDRDEVAHNYA 153 Query: 75 QETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y Q FS+L V + +DG +FD G SSMQ D +RGF K Sbjct: 154 KELAEKYPGQVIPLLGRFSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGFMISK 213 Query: 130 SGPLDMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184 +GPLDMRM +A+DV+ +A+ +DL IL GEEK+A +IA AI++ R Sbjct: 214 NGPLDMRMDGFRCPEEPTAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARYTFRS 273 Query: 185 FQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TTQ+L+ LI+ N H AT++FQALRIFVNNE+ E+ G+ AEK L Sbjct: 274 LRTTQELAKLIESLFPSDINTDQIGRFQHSATKTFQALRIFVNNELNEINHGIVIAEKLL 333 Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----------------ASRSGKVMAVRHMIPSNAHPA 283 K G +I +SFHSLED +VK+ + ++ P Sbjct: 334 KINGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDIMELTESP- 392 Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + K ++ PT E+V +N RSRSAK RA + Sbjct: 393 -WMMLHKHILSPTDEEVYYNPRSRSAKFRAIAKIK 426 >gi|242018707|ref|XP_002429815.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus corporis] gi|212514833|gb|EEB17077.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus corporis] Length = 382 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 169/330 (51%), Gaps = 29/330 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H PV+L +VI L+ G + LD TFG+GG+S ++ +ALDRDP A Sbjct: 49 PHEPVMLNEVIKNLDLKKGNLFLDMTFGSGGHSLELLNRVPDLKILALDRDPIAYEYALN 108 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + FS L + D +DG++ DLG SSMQ D +RGFS G Sbjct: 109 AKEKHPDNIYPLLGKFSDLPKLLNDNNIKANTIDGILLDLGCSSMQFDTPERGFSINNDG 168 Query: 132 PLDMRMSCSGISAS----DVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQ 186 PLDMRM C I S DV+ A +L I GEEK++ +IA AI + R P + Sbjct: 169 PLDMRMDCDRIKGSLTAGDVIAHATEMELYNIFKKYGEEKRSRKIARAITQMRNTFKPIK 228 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPA----TRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TT+DL+ LI + + ++++ T+ FQALRIFVNNE+ EL + A LK G Sbjct: 229 TTKDLNDLISVVLTDVRYDKLNRKTGTGTKIFQALRIFVNNELNELNYAMTLAHHYLKVG 288 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-------------PSNAHPAVFQSIT 289 +V++FHSLED +VK+ F ++ + ++ + + + Sbjct: 289 SRAVVLTFHSLEDVIVKRHFKNQHQLNYVQNLPLNMINSLKTYDECEFNSFNKQYWIPVN 348 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KKV++P +V N RSRSAKLRA ++T E Sbjct: 349 KKVLIPDSFEVCNNPRSRSAKLRAAIKTQE 378 >gi|118474367|ref|YP_891757.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus 82-40] gi|263445750|sp|A0RNH4|RSMH_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118413593|gb|ABK82013.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus 82-40] Length = 307 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 6/301 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75 H+PVLL+ V+ ILD T G GG+S + N+ IA DRD ++S + Sbjct: 3 SPHIPVLLKPVLNSFKDIKNGTILDCTLGYGGHSEAILISNPNLKIIACDRDSESLSFCK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ ++++ F+ + + + + + G++ D+GVSS+Q+D +RGFS + Sbjct: 63 AKFEKYSDRIKIYKSNFAGILNKIDHEDIRGILADIGVSSLQLDLDERGFSINSNNLDMR 122 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 SA +++N + L I E A +A IV R +P ++ ++LSS+I Sbjct: 123 MDKNQTFSAKELINSYSKDQLADIFYKYAELPNAKSLAQKIVDARDKSPIKSAKELSSII 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ KN + A +FQA+RI VN E++EL L + + +L ++SFHSLED Sbjct: 183 GRS--NLKNRSVSIAILAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 ++ K F + + + ++ + +TKK + P+++++ N RS AK+R Sbjct: 241 KIAKSTFKEWEKSCICDNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRI 300 Query: 314 G 314 Sbjct: 301 F 301 >gi|195107446|ref|XP_001998323.1| GI23693 [Drosophila mojavensis] gi|193914917|gb|EDW13784.1| GI23693 [Drosophila mojavensis] Length = 362 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 122/330 (36%), Positives = 171/330 (51%), Gaps = 31/330 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPVL E I L P PG +D TFGAGG++R V ALDRDP A Q Sbjct: 33 HVPVLCETAIEYLQPKPGGKYIDMTFGAGGHTRKLLDSCPETTVYALDRDPVAHQLAQRM 92 Query: 78 MRDYK--EQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + FS L + + DG++FD G SSMQ D RGFS Sbjct: 93 SQEQNYEGRLIPMLGKFSDLPQLLQALDVPPRSFDGMLFDFGCSSMQFDEAARGFSIAHD 152 Query: 131 GPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187 GPLDMRM C G+SA+DV+ + DL RIL + GEEK A +IA AIV+ R +T Sbjct: 153 GPLDMRMDCGRGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARNALQRIET 212 Query: 188 TQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEK-ALKA 241 T+ L+ L+ + H AT++FQALRIFVNNE+ E+ G+ A++ L+A Sbjct: 213 TRQLADLVAAVLGEGHRRDKLQRPSHVATKTFQALRIFVNNELNEINYGMVLAQELLLRA 272 Query: 242 GGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSI 288 G L+ ++FHSLED +VK+ SG + + + + ++ + Sbjct: 273 QGRLVAITFHSLEDTIVKRHLNGNVIEGVANPLPLKYSGHDLTHDPELMESFVRSNWRQL 332 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + V++P ++A N RSRSAKLRA ++ Sbjct: 333 HRHVILPDASEIARNSRSRSAKLRAAVKIK 362 >gi|225021917|ref|ZP_03711109.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii ATCC 33806] gi|224945304|gb|EEG26513.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii ATCC 33806] Length = 341 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 114/344 (33%), Positives = 179/344 (52%), Gaps = 27/344 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGSNV- 61 M + +H HVPVL E+V LL PA +ILDAT GAGG+S F V Sbjct: 1 MENTNNHG---HVPVLRERVTELLAPALCNTTTNPPIILDATLGAGGHSEYFLTTFPQVN 57 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106 I LDRD A++ + ++ ++ + F + +G+ G Sbjct: 58 IIGLDRDTTALAQAATRLANFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117 Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165 +FDLGVSSMQ+D +RGF+++ PLDMRM+ GI+A++++N +LTRIL G+ Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGNLTRILKTYGD 177 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNE 224 E+ AS+IA AI++ R+ APF T+ L L+ T+ ++ HPA R+FQALRI VN E Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + + L AL GG + +++ SLED+++KK+FA + I + A Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPIELPEYAAK 297 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328 F+ +T+ T ++A N R+ ++RA + + ++ Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLATSTNRKETSK 341 >gi|269215884|ref|ZP_06159738.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122] gi|269130834|gb|EEZ61910.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122] Length = 318 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + L P + +DAT G G+S +I +D+D A++ E Sbjct: 7 HTPVLLAECLEGLALKPRHIFVDATLGGAGHSCEAAGRLGADGLLIGIDQDDAALAAAGE 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQK 129 + + + L + F L + + V G+ +FDLGVSS Q+D RGFSF++ Sbjct: 67 RLRALPEKKRPRIKLLKGNFGDLDELLVRAQVPGIDGILFDLGVSSPQLDVASRGFSFRE 126 Query: 130 SGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM + A+++VN A +L RI+ +EK A RIA IV R+ AP +T Sbjct: 127 DAPLDMRMDPGRQTRNAAELVNSATESELARIIFENSDEKWARRIAQFIVAAREDAPIET 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L +I+ + S + HPA R+FQALRI VN+E++ L +GL +A + L G + Sbjct: 187 TGQLVEIIKAAIPASARRRGGHPAKRTFQALRIEVNSELDALKRGLEAAVRWLNPQGRIA 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK FA S + + V + +T+K ++P + ++ N R Sbjct: 247 VISYHSLEDRIVKNLFADLSRTCICPPDLPVCVCGADPVLKVMTRKPLLPAEGEIEGNPR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR R Sbjct: 307 ARSAKLRIACR 317 >gi|305681071|ref|ZP_07403878.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC 14266] gi|305659276|gb|EFM48776.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC 14266] Length = 341 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 114/344 (33%), Positives = 180/344 (52%), Gaps = 27/344 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--N 60 M + +H HVPVL E+V LL PA +ILDAT GAGG+S F + Sbjct: 1 MENTNNHG---HVPVLRERVTELLAPALCNTITNPPIILDATLGAGGHSEYFLTTFPQVH 57 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106 +I LDRD A++ + D+ ++ + F + +G+ G Sbjct: 58 IIGLDRDTTALAQAATRLADFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117 Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165 +FDLGVSSMQ+D +RGF+++ PLDMRM+ GI+A++++N DLTRIL G+ Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGDLTRILKTYGD 177 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNE 224 E+ AS+IA AI++ R+ APF T+ L L+ T+ ++ HPA R+FQALRI VN E Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + + L AL GG + +++ SLED+++KK+FA + + + A Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPMELPEYAAK 297 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328 F+ +T+ T ++A N R+ ++RA + + ++ Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLATSTNRKETSK 341 >gi|148243357|ref|YP_001228514.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307] gi|262825772|sp|A5GWA2|RSMH_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147851667|emb|CAK29161.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307] Length = 299 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 164/319 (51%), Gaps = 32/319 (10%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALD 65 MSS+ H H PVL ++V+ L P V+LDAT G GG+S + +I LD Sbjct: 1 MSSSFH-----HQPVLPQQVLEALAELPDEGVLLDATVGGGGHSSLLLDVHPGWQLIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A + + + + E+ L + F+ Y PD+ V V+ DLGVSS Q+D +RGF Sbjct: 56 QDPAARAAAAQQLERFGERVQLVASNFA---AYTPDQPVVAVLADLGVSSHQLDVPERGF 112 Query: 126 SFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SF+ GPLDMRM+ G +A+ ++++ L +L GEE+ + RIA + Sbjct: 113 SFRADGPLDMRMNTEGDGETAAALIDRLEENALADLLFHYGEERLSRRIARRLKTEGPWD 172 Query: 184 PFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + T ++ ++ RIH ATRSFQALRI VN+E+ L L A L+ Sbjct: 173 DGERGTAALAYAIAGCYPPKQRHGRIHAATRSFQALRIAVNDELGVLETLLNDAPNWLEP 232 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+SFHSLEDRLVK F + + I++K ++ ++++ Sbjct: 233 GGRIAVISFHSLEDRLVKNRFKADE-----------------RLRVISRKPLIASEQEAE 275 Query: 302 FNRRSRSAKLRAGMRTVER 320 N R+RSAKLR R Sbjct: 276 ANPRARSAKLRVAERLSAE 294 >gi|312373365|gb|EFR21121.1| hypothetical protein AND_17511 [Anopheles darlingi] Length = 384 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 48/355 (13%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 ++ H PV+ + + L P + +D TFGAGG+SR+ G+ +IALDRD Sbjct: 28 TADPASRTTPHRPVMAGETVRFLEPQNNQTFIDMTFGAGGHSRALLGAAPGATIIALDRD 87 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQD--------YVPDKGVDGVVFDLGVSSMQID 119 P A E +Y + +FS+L Y + +DG++FD G SSMQ D Sbjct: 88 PHAHRLACEMATEYPGRILPVLGSFSELPSLLRTLPEGYGRQRFIDGIIFDFGCSSMQFD 147 Query: 120 CGDRGFSFQKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 RGFS GPLDMRM SA++V+ + +DL RIL + GEEKQA +IA A Sbjct: 148 EAARGFSIAHDGPLDMRMDKDRCPEQLSAAEVLARVQEQDLARILKVYGEEKQAKKIARA 207 Query: 176 IVK-RRQSAPFQTTQDLSSLIQKTVYFSK--------------------NNRIHPATRSF 214 IV R +TT +L+S++ + ++ H AT++F Sbjct: 208 IVNARFTVKRIETTAELASIVAHCLSSNQATETGPVSSASSFEYRQDKLRRPAHVATKTF 267 Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274 QALRIFVNNE+ E+ G+ A+ L+ GG L+ ++FHSLED +VK+ +A R Sbjct: 268 QALRIFVNNELNEINYGMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRV 327 Query: 275 MI-------------PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ +TK VVVP++ +V N RSRSAKLRA +R Sbjct: 328 PLQFISHTLAHENDTMQEMMKPNWRQLTKHVVVPSEAEVTANPRSRSAKLRAAVR 382 >gi|298491041|ref|YP_003721218.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708] gi|298232959|gb|ADI64095.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708] Length = 301 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 161/309 (52%), Gaps = 24/309 (7%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 ++ HVPVL ++VI L +P LD T G GG+SR + V A+D+D A Sbjct: 11 LNEIAFSHVPVLSQQVIGGLVVSPRGNYLDLTVGGGGHSRLILETAEDVKVTAVDQDEDA 70 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + ++ ++ + + F+ P G++ DLGVSS +D +RGFSF+ + Sbjct: 71 LKAAKANLAEFGDRVNFIHSNFANYD--FPPNTYHGILADLGVSSYHLDNPERGFSFRNT 128 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ +A D++N + +L I GEE+ + RIA IV++R TT+ Sbjct: 129 ANLDMRMNQQQFLTAGDIINNWDEGELADIFFKYGEERLSRRIARRIVEKRPFH--TTTE 186 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + + + R+HPATR FQALRI VN+E++ L + A +L GG + ++S Sbjct: 187 LANVIAYSVPPKYRYGRLHPATRVFQALRIVVNDELKVLETLIDKAPHSLVPGGRIAIIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK + S + Q +TKK ++ T+ ++ N RSRSA Sbjct: 247 FHSLEDRLVKHGLRNLS-----------------LLQVLTKKPILGTESEITENLRSRSA 289 Query: 310 KLRAGMRTV 318 KLR + Sbjct: 290 KLRIAEKKN 298 >gi|86160181|ref|YP_466966.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-C] gi|123496850|sp|Q2IG17|RSMH_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85776692|gb|ABC83529.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 310 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 31/315 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDR 66 H PVL +V+ LL P PG++ LD + G+ VIALD+ Sbjct: 7 HEPVLANEVLELLRPRPGELFLDGTLGGGGHSGLLL-------------EAGARVIALDK 53 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123 DP A++ + + E F ++ F ++ + VDG + DLGVSS Q+D +R Sbjct: 54 DPRALAAATARLARFGEAFRAVRSDFRDAKNVLEALGIGAVDGALVDLGVSSPQLDEAER 113 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF + GPLDMRM +G + D++ + + ++L RIL GEE A +A AI ++ Sbjct: 114 GFSFSRPGPLDMRMGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAIKAALEAE 173 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ ++ + +RIHPATR+FQALRI VN+E+ LA L L G Sbjct: 174 APLDTARLAEVVAGAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPG 233 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G +SFHSLEDR+VK+ F + + + + A F +IT+K V + +++A Sbjct: 234 GRAAAISFHSLEDRMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDDEIA 293 Query: 302 FNRRSRSAKLRAGMR 316 N R+RSA+LRA + Sbjct: 294 RNPRARSARLRAVEK 308 >gi|296113990|ref|YP_003627928.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4] gi|295921684|gb|ADG62035.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4] Length = 333 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 174/329 (52%), Gaps = 25/329 (7%) Query: 8 TMSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKM 57 TMS+ I + H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 3 TMSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEY 62 Query: 58 GS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDL 111 + + D+DP A++ + + + + +F+ L + +DG++ DL Sbjct: 63 LAPEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADL 121 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS Q+D G RGFSF + G +DMRM G S+ + + + +L +L GEE+ + Sbjct: 122 GVSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSR 181 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 +IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 182 KIARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEA 237 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSIT 289 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F Sbjct: 238 FLAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPK 297 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + P ++V N R+RSA LR +R+ Sbjct: 298 R--IGPCDQEVKANPRARSAWLRGAVRSD 324 >gi|327399188|ref|YP_004340057.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima DSM 10411] gi|327181817|gb|AEA33998.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima DSM 10411] Length = 297 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 26/306 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H VLL++ I L P G + +D T GA G++ K+ VIA D+D A+ Q Sbjct: 2 KHKSVLLKETITTLQPRNGGIYIDMTLGAAGHTEKLLKLSSPSGIVIAFDKDQDAIKHAQ 61 Query: 76 ETMRD-YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +++ Y ++ L ++ +++++ VDGV+ DLGVS Q+ DRGFSF Sbjct: 62 EKLKETYGDRLILINDDYANIKEHLRRLEIDEVDGVIMDLGVSLDQLKS-DRGFSFNIDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A +VN ++++L RI+ + GEE A RIA AI ++ P TT++ Sbjct: 121 PLDMRMDKNKPLTAEKIVNHWDMEELERIIRLYGEENFARRIAKAI---VKNRPIHTTKE 177 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ TV S + RIHPATR+FQALRI VN+E+E L +GL+ A +ALK G++ +SF Sbjct: 178 LAELIELTVPRSVSRRIHPATRTFQALRIVVNDELESLQKGLKGAIEALKENGIICAISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK V + + KK + PT ++V N+ SRSAK Sbjct: 238 HSLEDRIVKNILRDY--------------KQKGVLRLLNKKPIRPTPQEVKSNKHSRSAK 283 Query: 311 LRAGMR 316 LR ++ Sbjct: 284 LRCALK 289 >gi|332531941|ref|ZP_08407825.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis ANT/505] gi|332038568|gb|EGI75011.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis ANT/505] Length = 285 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 111/285 (38%), Positives = 165/285 (57%), Gaps = 13/285 (4%) Query: 42 DATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 D TFG GG+S + A+D+DP A+ ++ +F++ FS L + Sbjct: 2 DGTFGRGGHSGQILARLGDEGRLQAIDQDPQAIQSAEKF--ADDPRFAIAHTRFSNLYEV 59 Query: 99 VPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 VDG++ D+GVSS Q+D +RGFSF K GPLDMRM + G SA+ + +A + Sbjct: 60 AQQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGPLDMRMDPTTGRSAAQWLAEAEL 119 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 D+T ++ LGEEK RIAH +++ R+ P TT+ L+ L+ + V K+ HPATR+ Sbjct: 120 DDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQLADLVDEAVPV-KDKFKHPATRT 178 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQA+RI++N+E+EE+ L+SA K LK GG L+V+SFHSLEDR+VK+F +S R Sbjct: 179 FQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISFHSLEDRIVKQFIRKQSKGEALPR 238 Query: 274 HMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++A + K + P+ +V N RSRS+ LR R Sbjct: 239 GLPLTDAQINKNLTLKAVGKAIKPSAAEVERNPRSRSSVLRIAQR 283 >gi|254415023|ref|ZP_05028786.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC 7420] gi|196178170|gb|EDX73171.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC 7420] Length = 291 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 153/318 (48%), Gaps = 38/318 (11%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M H VL +++IA L PG LDAT G GG+S +V Sbjct: 1 MEFDAQTAQFFHRSVLSQELIAGLAIRPGGHYLDATVGGGGHSELILSAAPDVR------ 54 Query: 69 FA---------VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 ++ Q + Y ++ ++ F Q P+ DG++ DLGVSS Q+D Sbjct: 55 -VTAIDQDAQAIAAAQTRLASYGDRIQFWRGNFVDYQ--PPESLFDGIIADLGVSSAQLD 111 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 DRGFSF+ PLDMRM ++A+ ++N + L + GEE+ + RIA AIV+ Sbjct: 112 IPDRGFSFRHQAPLDMRMDQRQSLTAAQIINHWDETQLANTIYEYGEERLSRRIARAIVE 171 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RR TTQ ++ + + RIHPATR+FQALRI VN E+ L + L A + Sbjct: 172 RRPFE--TTTQLAEAIARSVPKKYRYGRIHPATRTFQALRIAVNQELSSLEKFLNCAPRW 229 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK GG + ++SFHSLEDRLVK + + +TKK + P Sbjct: 230 LKPGGRIGIISFHSLEDRLVKHHLRDS-----------------PILRVLTKKPITPQPT 272 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RSAKLR R Sbjct: 273 ERDENPRARSAKLRLAER 290 >gi|297243796|ref|ZP_06927726.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis AMD] gi|296888217|gb|EFH26959.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis AMD] Length = 345 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 11/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63 M+ + H PVLL+ + L+ P G +++D T G G++ +F K +I Sbjct: 1 MTDVMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60 Query: 64 LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118 +DRD A+S + MR +F A F ++ + + + +DG+ DLG+SS+QI Sbjct: 61 IDRDAEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLRENRIDGIDAAFMDLGLSSLQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177 D DRGFS+ LDMRM + + + + + + LTRI GEE+ AS IA IV Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRGLTRIFREYGEERFASLIARRIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + P T+ L SL+ + + +PA R FQALRI VN E+++L+ L Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSCTLPKIAL 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ G L+V S+HSLED VK+F + + + F+++T+ + ++ Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300 Query: 298 EDVAFNRRSRSAKLRAGM 315 E++ N RS S +LRA Sbjct: 301 EEIVHNTRSSSVRLRAVE 318 >gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa] gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa] Length = 435 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 160/348 (45%), Gaps = 45/348 (12%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71 H HVPV+L +V+ + + P + +D T GA G+S + K + I +D DP A Sbjct: 87 HETESHVPVMLGEVVDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAH 146 Query: 72 SCGQE----TMRDYKEQFSLF--QATFSQLQDYVPDKGVDG---------VVFDLGVSSM 116 + + ++ + F ++ V + D ++ DLG+SSM Sbjct: 147 AKARAHIDALLQSTRSSLKPHLLFKNFKYIKSVVGEIDDDCKLLSSGVDGILMDLGMSSM 206 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q++ RGFS +GPLDMRM + A D++N ++ RIL GEE + Sbjct: 207 QVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKK 266 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGL 232 IV+ RQ +T +L LIQ + +K I ATR FQALRI VN+E+ L + L Sbjct: 267 IVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTATRVFQALRIAVNDELNTLEKSL 326 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ------ 286 + + L GG L V+SFHSLEDR+VK+ F ++ A + Sbjct: 327 HACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDI 386 Query: 287 -----------------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +TK+ + P++E+ NRRSRSAKLR + Sbjct: 387 DAKETWIRQMVQGQNGTILTKRPITPSEEEERLNRRSRSAKLRVIEKI 434 >gi|293977957|ref|YP_003543387.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN] gi|292667888|gb|ADE35523.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN] Length = 300 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 11/302 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVLL+++++ L + +D TFG GG+S S VIA D+D ++ Sbjct: 4 YHIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKN-N 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + V G++ DLG+SS QI+ RGFS + + LDM Sbjct: 63 NILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSILDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM I+A ++N + +L +L GE K A I+ I+K R+ ++T DL + Sbjct: 123 RMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLIKI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + F + ++ FQ+LRI VN+EI L L+++ LK GG + V+S+HS+E Sbjct: 183 ----LNFFYKKKNKYLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHSIE 238 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VKKF + + + +N P + +++ ++E+ N RSRSA LR Sbjct: 239 DRIVKKFLKTGNFNGIIPYDEYGNNLSP--LILLEPRIIFSSKEEKKENNRSRSAILRIA 296 Query: 315 MR 316 + Sbjct: 297 EK 298 >gi|94502345|ref|ZP_01308815.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833845|ref|YP_001598041.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS] gi|259495905|sp|A8Z694|RSMH_SULMW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94451100|gb|EAT14055.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206335|gb|ABS30645.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS] Length = 300 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 11/302 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVLL+++++ L + +D TFG GG+S S VIA D+D ++ Sbjct: 4 YHIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKN-N 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + V G++ DLG+SS QI+ RGFS + + LDM Sbjct: 63 NILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSILDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM I+A ++N + +L +L GE K A I+ I+K R+ ++T DL + Sbjct: 123 RMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLIKI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + F + ++ FQ+LRI VN+EI L L+++ LK GG + V+S+HS+E Sbjct: 183 ----LNFFYKKKNKFLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHSIE 238 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VKKF + + + +N P + +++ ++E+ N RSRSA LR Sbjct: 239 DRIVKKFLKTGNFNGIIPYDEYGNNLSP--LILLEPRIIFSSKEEKKENNRSRSAILRIA 296 Query: 315 MR 316 + Sbjct: 297 EK 298 >gi|325106882|ref|YP_004267950.1| ribosomal RNA small subunit methyltransferase H [Planctomyces brasiliensis DSM 5305] gi|324967150|gb|ADY57928.1| Ribosomal RNA small subunit methyltransferase H [Planctomyces brasiliensis DSM 5305] Length = 307 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 153/314 (48%), Gaps = 24/314 (7%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 H PVLL + I + PG ++D T GA G+S K G +I LDRDP Sbjct: 3 SPAPTQHRPVLLRETIQGMELKPGMTVIDGTVGAAGHSSEIWKRIQPGGRLIGLDRDPEM 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D + + + +++ + VD ++ DLG+SS Q+ RGF F Sbjct: 63 LARSSCRLGDSADLIHASYLDANGVLEHLGVEKVDRLLVDLGLSSDQLADDQRGFGFATE 122 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 G LDMR G +N+A+V ++T++L GEE QA++IA +V R+S P + Sbjct: 123 GQLDMRFDMTQGKPVHHWLNKADVAEITKVLSEYGEEPQAAQIAAKVVDARRSQPITSVA 182 Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL-LI 246 L +I+K + HPATR+FQALRIF N E+E L + L + G L Sbjct: 183 ALREIIEKVAGGRGRAAGKSHPATRTFQALRIFANAELEHLQRFLTITAPYVLKPGGLLA 242 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++FHSLEDRL K+ A R + KK + PT ++ N RS Sbjct: 243 VITFHSLEDRLTKQALADREVWADSS-----------------KKPIGPTPLEIKMNPRS 285 Query: 307 RSAKLRAGMRTVER 320 RSAKLR G+R Sbjct: 286 RSAKLRIGIRAEAE 299 >gi|197124208|ref|YP_002136159.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K] gi|263446708|sp|B4UER3|RSMH_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|196174057|gb|ACG75030.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K] Length = 310 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 31/315 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDR 66 H PVL +++ LL P PG++ LD + G+ VIALD+ Sbjct: 7 HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLL-------------EAGARVIALDK 53 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123 DP A++ + + E F ++ F ++ + VDG + DLGVSS Q+D +R Sbjct: 54 DPRALAAATARLARFGEAFRAVRSDFRDAKNVLQALGIAAVDGALVDLGVSSPQLDEAER 113 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF + GPLDMRM +G + D++ + + ++L RIL GEE A +A A+ ++ Sbjct: 114 GFSFSRPGPLDMRMGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETE 173 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ ++ + +RIHPATR+FQALRI VN+E+ LA L L G Sbjct: 174 APLDTARLAEVVAGAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPG 233 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G +SFHSLEDR+VK+ F + + + + A F +IT+K V + E++A Sbjct: 234 GRAAAISFHSLEDRMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIA 293 Query: 302 FNRRSRSAKLRAGMR 316 N R+RSA+LRA + Sbjct: 294 RNPRARSARLRAVEK 308 >gi|326567260|gb|EGE17380.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 12P80B1] gi|326572872|gb|EGE22857.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis CO72] Length = 330 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 173/328 (52%), Gaps = 25/328 (7%) Query: 9 MSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58 MS+ I + H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 1 MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60 Query: 59 S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLG 112 + + D+DP A++ + + + + +F+ L + +DG++ DLG Sbjct: 61 APEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D G RGFSF + G +DMRM G S+ + + + +L +L GEE+ + + Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 180 IARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F + Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPKR 295 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + P ++V N R+RSA LR +R+ Sbjct: 296 --IGPCDQEVKANPRARSAWLRGAVRSD 321 >gi|284991692|ref|YP_003410246.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM 43160] gi|284064937|gb|ADB75875.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM 43160] Length = 330 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 116/301 (38%), Positives = 172/301 (57%), Gaps = 12/301 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPVLL++V LL PA G V++DAT G G+S + + ++ LDRDP A + Sbjct: 17 HVPVLLDRVTELLAPACAADGAVLVDATLGLAGHSLALLRAHPGLRLVGLDRDPDARAEA 76 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D ++ ++ A F +L + V V+FDLGVSS+Q+D DRGFS+ Sbjct: 77 TRRLTDAGVADRATVVPAVFDELPGVLDRLGLTEVQAVLFDLGVSSLQLDRPDRGFSYAA 136 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S +A+DVVN L R+L + GEE+ A+RIA AI + R+ APF T Sbjct: 137 DAPLDMRMDPSAPRTAADVVNTYPTDRLARVLRVYGEERFATRIAQAITRERERAPFTHT 196 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + L+ L++ ++ ++ HPA R+FQALRI VN+E+ L + L +A AL GG + V Sbjct: 197 ERLAHLVRASIPAATRRTGGHPAKRTFQALRIEVNDELGVLERALPAALDALTVGGRIAV 256 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+VK+ A+ + +P + +T+ P++ +VA N RS Sbjct: 257 ITFHSLEDRIVKQTLAAGAVDRTPPGLPVPLPEMGPTLRLLTRGGEAPSEAEVAANPRSA 316 Query: 308 S 308 S Sbjct: 317 S 317 >gi|146328861|ref|YP_001209878.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A] gi|167011832|sp|A5EY11|RSMH_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146232331|gb|ABQ13309.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A] Length = 308 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 154/311 (49%), Gaps = 15/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H+PVLL + +A L AP LDATFG GG+S + ALDRD Sbjct: 2 ETSEHIPVLLAEAVAALEIAPNGRYLDATFGRGGHSSEILAQLGESGQLYALDRDQ---Q 58 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + +F + FS+++ + +DG++FDLGVSS Q+D RGFSF K Sbjct: 59 AAAVAAQITDPRFHFARCAFSEMETAFAALGAESLDGILFDLGVSSPQLDDPSRGFSFAK 118 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +A + + LT ++ G E +A I K +A Sbjct: 119 EGPLDMRMDNEQNLTAQKWLKNVDEDTLTTVIRDYGGEPHT--VAKRIAKAILAAKNDLK 176 Query: 189 QDLSSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 L K HPAT++FQA+RI VN+EI E+ + LR+A LK+GG+L Sbjct: 177 STLDLASVVAQARPKKLYKPHLHPATQTFQAIRIAVNDEIGEIQRALRAATMMLKSGGIL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFH LED VK+F S G+ + + + + V+ P+ ++A N R Sbjct: 237 VVISFHGLEDATVKRFVRSMEGEPLPAEIPATNTTNIHQVLRLVPPVIKPSSAEIAQNPR 296 Query: 306 SRSAKLRAGMR 316 SRSAKLR ++ Sbjct: 297 SRSAKLRKAVK 307 >gi|42524595|ref|NP_969975.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100] gi|110826013|sp|P62469|RSMH_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39576805|emb|CAE78034.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 328 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 26/310 (8%) Query: 17 IGDHVPVLLEKVIAL---LNPAPGKVILDATFGAGGYSRSFCKMGSNVIA--LDRDPFAV 71 +H PVLL++V+A L D TFG GG+ + + A +D+D A+ Sbjct: 30 SPEHYPVLLQEVLAAFYPLRDKKELSYFDGTFGRGGHYMALKYAYPQMKATVMDQDLAAI 89 Query: 72 SCGQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + Q K Q ++ F+Q ++ + D ++ DLGVSS Q+D G+RGFSF Sbjct: 90 AFAQSRFQTEVEKGQLNVIHGNFTQFSEHNLN-NFDMMLLDLGVSSPQLDQGERGFSFYN 148 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G++A ++N A+ +L RI GE + SR+ AIV R++ FQTT Sbjct: 149 DGPLDMRMNQQQGLTAEVLINTASEDELIRIFKEYGEVYRPSRVVRAIVNDRKTKAFQTT 208 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI++ V + HPAT+ F ALR+ VN+E+E +A+ + +AL GG L V+ Sbjct: 209 GALAGLIER-VDGWQVKGHHPATKYFMALRLAVNSELEVVAEAIPKMIRALNPGGRLAVI 267 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F + +++TKKV+VPTQE+ N RSRS Sbjct: 268 SFHSLEDRIVKNIFRESED----------------LGRTVTKKVIVPTQEECDRNSRSRS 311 Query: 309 AKLRAGMRTV 318 AKLR R+ Sbjct: 312 AKLRIFERSA 321 >gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis] gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis] Length = 364 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 122/333 (36%), Positives = 172/333 (51%), Gaps = 31/333 (9%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVL + I L P +D TFGAGG++R + V ALDRDP A Sbjct: 32 SAPHVPVLCQTAIDYLQPVASGKYIDMTFGAGGHTRRLLDSCPDTTVYALDRDPLAHELA 91 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 Q + DY + FS+L + DG++FD G SSMQ D RGFS Sbjct: 92 QRMSQENDYAGRLVPLLGKFSELPQLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFSI 151 Query: 128 QKSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSA 183 +GPLDMRM C ISA+DV+ +A DL RIL + GEEK A +IA AIV+ R Sbjct: 152 AHNGPLDMRMDCGRSGSISAADVLARAEEADLARILRVYGEEKAAKKIARAIVEARSALQ 211 Query: 184 PFQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +TT+ L+ L+ + + H AT++FQALRIFVNNE+ E+ G+ A++ Sbjct: 212 RIETTRQLADLVAAVLGDGQRLDRLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQEL 271 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVF 285 L+A G L+ ++FHSLED +VK+ + +A + H + + Sbjct: 272 LRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSNW 331 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + + V+ P ++A N RSRSAKLRA ++ Sbjct: 332 RQLHRHVIQPDATEIARNSRSRSAKLRAAIKIK 364 >gi|328952338|ref|YP_004369672.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca acetoxidans DSM 11109] gi|328452662|gb|AEB08491.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca acetoxidans DSM 11109] Length = 303 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 165/314 (52%), Gaps = 25/314 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 ++++V+A L PG + +D T G GG++ + V+ LD+D A+ + Sbjct: 1 MVQEVLAELQCQPGHIYVDGTVGLGGHAEAILLRSSPTGQVVGLDQDSAALQIAALRLLP 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y + L + ++QL + + + ++ ++ DLG+S+ Q+ RGFSF+ PLDMRM Sbjct: 61 YGPRVYLIHSCYTQLAEILQQRRIESVDGILLDLGISTEQLKSSGRGFSFKGKEPLDMRM 120 Query: 138 SC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 + +A+D++N L+R+ LGEE+ A RIA IV+ RQ AP TT L +I Sbjct: 121 NPDVQTTTAADLLNTEPEAQLSRMFWELGEERWARRIARNIVRARQQAPLITTNQLVEVI 180 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ RIHPATR FQALRI VN E+E+++ + A K L GG L+++ +HSLE Sbjct: 181 LRSLPPKTGMKRIHPATRVFQALRIAVNQELEKISAFIPQAIKVLAPGGRLVIIDYHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ F R KK ++P + +VA N +RSAK+R Sbjct: 241 DRIVKRAFIEAERAGSVRRRY--------------KKPLIPGEAEVASNPSARSAKMRTV 286 Query: 315 MRTVERSIEDDSFV 328 + + D + Sbjct: 287 EKL--PASPDKNLK 298 >gi|194476804|ref|YP_002048983.1| methyltransferase [Paulinella chromatophora] gi|171191811|gb|ACB42773.1| methyltransferase [Paulinella chromatophora] Length = 283 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 150/301 (49%), Gaps = 26/301 (8%) Query: 22 PVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETM 78 PVL +V+ P VILD T G GG+S + I LD+DP A + + Sbjct: 2 PVLASQVVQAFASLPPYGVILDCTVGGGGHSSLLLNNHPKLRIIGLDQDPDAWLKANQYL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++ + L + F+ + GV+ DLGVSS Q++ RGFSF+ GPLDMRM+ Sbjct: 62 ASFRYRTRLIKTNFADFVPVE---PLSGVLVDLGVSSHQLEVAQRGFSFRFEGPLDMRMN 118 Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G +A+++VN K+L ++ GE++ + RIA IV+ + T + Sbjct: 119 PSKGETAAELVNYLGEKELADLIFSYGEDRFSRRIARRIVQ--KRPFNSTKDLAYVIAGC 176 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 S+ RIHPATR+FQALRI VNNE+E L L L GG++ ++SFHSLEDR Sbjct: 177 YSPKSRRGRIHPATRTFQALRIAVNNEMEVLDHLLSRIPDWLIPGGIVAIISFHSLEDRR 236 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+ F + IT K +V + + N RSRSAKLR RT Sbjct: 237 VKQAF-----------------LTDERLERITNKPLVADENERNDNSRSRSAKLRIAKRT 279 Query: 318 V 318 Sbjct: 280 D 280 >gi|220918988|ref|YP_002494292.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-1] gi|263446697|sp|B8J8E0|RSMH_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219956842|gb|ACL67226.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-1] Length = 310 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 31/315 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDR 66 H PVL +++ LL P PG++ LD + G+ VIALD+ Sbjct: 7 HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLL-------------EAGARVIALDK 53 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDR 123 DP A++ + + E F ++ F ++ + VDG + DLGVSS Q+D +R Sbjct: 54 DPRALAAATARLARFGEAFRAVRSDFRDAKNVLEALGIAAVDGALVDLGVSSPQLDEAER 113 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF + GPLDMRM +G + D++ + + ++L RIL GEE A +A A+ ++ Sbjct: 114 GFSFSRPGPLDMRMGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETE 173 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ ++ + +RIHPATR+FQALRI VN+E+ LA L L G Sbjct: 174 APLDTARLAEVVAGAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPG 233 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G +SFHSLEDR+VK+ F + + + + A F +IT+K V + E++A Sbjct: 234 GRAAAISFHSLEDRMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIA 293 Query: 302 FNRRSRSAKLRAGMR 316 N R+RSA+LRA + Sbjct: 294 RNPRARSARLRAVEK 308 >gi|317968143|ref|ZP_07969533.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0205] Length = 292 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 158/307 (51%), Gaps = 32/307 (10%) Query: 22 PVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 PVL +V+A LL G +++D T G GG+S + ++ LD+DP A Sbjct: 2 PVLAAQVLASFTALEPLLQERGGGLLIDCTLGGGGHSALLLEAHPGLKLVGLDQDPTARQ 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++ S+ F+ DY P + V+ DLGVSS Q+D +RGFSF+ GP Sbjct: 62 AAAERLEPFGDRVSIVATNFA---DYQPQEPALAVMADLGVSSPQLDVAERGFSFRHDGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQSAPFQTTQ 189 LDMRM+ G +A++++ + +L ++ GEE+ + RIA I + Q T Sbjct: 119 LDMRMNPQAGETAAELIERLEETELADLIYAYGEERLSRRIARKIKQHLAEQGPFAGTDA 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GGL+ V+S Sbjct: 179 LAYLVAGCYAPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLMGVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F+S Q +T+K +E+ + N RSRSA Sbjct: 239 FHSLEDRRVKTAFSSDE-----------------RLQRVTRKPETAGEEEQSSNPRSRSA 281 Query: 310 KLRAGMR 316 K R R Sbjct: 282 KWRVARR 288 >gi|195941340|ref|ZP_03086722.1| hypothetical protein Bbur8_00460 [Borrelia burgdorferi 80a] gi|224533199|ref|ZP_03673799.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23] gi|224511926|gb|EEF82327.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23] gi|312148089|gb|ADQ30748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi JD1] Length = 296 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|296269378|ref|YP_003652010.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833] gi|296092165|gb|ADG88117.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833] Length = 327 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 117/298 (39%), Positives = 173/298 (58%), Gaps = 10/298 (3%) Query: 17 IGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 + HVPV+L +V+ LL PA P V++DA G GG++ + K ++I +DRDP A+ Sbjct: 14 VNGHVPVMLGRVLELLAPALTGPDPVLVDANVGLGGHAEALLKAHPALHLIGIDRDPTAI 73 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + Y E+ +L A +L ++G +FDLG+SS QID RGF++ Sbjct: 74 ERSTARLAPYAERVTLVHAVSDELPTILSRAGRPRINGALFDLGLSSPQIDEAARGFAYS 133 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM +A+DVVN +V +LTRIL GEE+ A+RIA+AI + R +P T Sbjct: 134 YDAPLDMRMDPGQELTAADVVNGYSVAELTRILREYGEERFAARIANAIARERARSPITT 193 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L+ L++ + ++ +PA R+FQALRI VN E+ L + L +A AL GG ++ Sbjct: 194 TKRLADLVRDAIPAATRRTGGNPAKRTFQALRIEVNQELAALERALPAALDALAVGGRVV 253 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+++HSLEDRLVK+ A RS + +P AH F+ +TK +P E+VA N Sbjct: 254 VLAYHSLEDRLVKRVLAERSTESGPPGLPVPLEAHLPTFRLLTKGAELPDDEEVARNP 311 >gi|226320608|ref|ZP_03796168.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805] gi|226234027|gb|EEH32748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805] Length = 296 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEYYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|183983192|ref|YP_001851483.1| methyltransferase [Mycobacterium marinum M] gi|262825131|sp|B2HGS5|RSMH_MYCMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183176518|gb|ACC41628.1| methyltransferase [Mycobacterium marinum M] Length = 345 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 18/317 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVL ++ + LL PA V++DAT GAGG++ F +I LDRDP Sbjct: 15 HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L Y + +DG +FDLGVSSMQ+D +R Sbjct: 75 ALEIVRTRLARFADRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ K PLDMRM+ SA+D++N + L IL GEE+ A RIA I++RR Sbjct: 135 GFAYSKDAPLDMRMNPQSALSAADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L +L+ + + + + HPA R+FQALRI VN+E+ L + +A AL Sbjct: 195 KPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAIPAAMDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA + + H F+S+T +V Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPMDLPVELPGHGPRFRSLTHGAERADAAEVE 314 Query: 302 FNRRSRSAKLRAGMRTV 318 N RS +LRA R Sbjct: 315 RNPRSAPVRLRALERLE 331 >gi|72383375|ref|YP_292730.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. NATL2A] gi|88909209|sp|Q46HK1|RSMH_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72003225|gb|AAZ59027.1| bacterial methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 304 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 101/314 (32%), Positives = 158/314 (50%), Gaps = 31/314 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + +H+PV+ +++I L P +I+DAT G GG+S + +I LD+ Sbjct: 8 SSSNFNHIPVMGKEIIRSLKELPSELTKKGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A+ + + + + + F+ D+ + V+ DLGVSS Q+D RGFS Sbjct: 68 DPMAIKAASKKLIKFGTRIEIISTNFA---DFSHHEQAICVLADLGVSSHQLDEPSRGFS 124 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ +GP+DMRM+ G SA++++ + ++L ++ LGEEK++ RIA I Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184 Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T ++ + RIHP+TR+FQALRI VNNE+ L L A L G Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L +V+SFHSLEDR VK F + + ++KK + + E++ N Sbjct: 245 LFMVMSFHSLEDRRVKSSFKT-----------------DNRLKVLSKKPIRASPEEIELN 287 Query: 304 RRSRSAKLRA-GMR 316 RS+SAKLR + Sbjct: 288 PRSKSAKLRISAKK 301 >gi|85714965|ref|ZP_01045950.1| methyltransferase [Nitrobacter sp. Nb-311A] gi|85698162|gb|EAQ36034.1| methyltransferase [Nitrobacter sp. Nb-311A] Length = 419 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 133/298 (44%), Positives = 180/298 (60%), Gaps = 5/298 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPF 69 + + HVPVL + +A+L G V +DATFGAGGYSR+ + VI +DRDP Sbjct: 86 AIMTEPPVRHVPVLGGEAVAMLALRAGGVYVDATFGAGGYSRAILATADTRVIGIDRDPA 145 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ G + + + +L + FS L VDGVV D+GVSSMQ+D DRGFS Sbjct: 146 AIAGGSALVEESGGRLTLVEDRFSNLASVCAAQDVAVVDGVVMDVGVSSMQLDEADRGFS 205 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ GPLDMRMS G +A+DVV A+ DL I+ I GEE+++ +A AIV R+ P Sbjct: 206 FRLDGPLDMRMSGHGPTAADVVAHASETDLADIIYIFGEERRSRAVARAIVAARRHGPIA 265 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT+ L+ ++ K V +K + IHPATR+FQALRIFVN E++EL L +AE+ LK GG L Sbjct: 266 TTRALADVVSKVV-RAKPHEIHPATRTFQALRIFVNEELDELVAALAAAERVLKPGGRLA 324 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VVSFHSLEDR+VK F A R + RH F +TK+ + P +E++ N Sbjct: 325 VVSFHSLEDRIVKNFLARRGKRGGGSRHRPEIEQGSPSFAILTKRPLTPGEEEMHANP 382 >gi|167966821|ref|ZP_02549098.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Ra] gi|215411891|ref|ZP_03420665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|215427543|ref|ZP_03425462.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T92] gi|215446396|ref|ZP_03433148.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] Length = 331 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 170/318 (53%), Gaps = 18/318 (5%) Query: 22 PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 PVL ++ LL PA P V+LDAT GAGG++ F + +I LDRDP A+ Sbjct: 2 PVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGF 125 + + + ++ +L + L + + G DG++FDLGVSSMQ+D +RGF Sbjct: 62 DVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ PLDMRM + +A+D+VN + L IL GEE+ A RIA IV+RR P Sbjct: 122 AYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTP 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F +T +L +L+ + + + HPA R+FQALRI VN+E+E L + +A AL GG Sbjct: 182 FTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+++ SLEDR+VK+ FA + H F+S+T + ++ N Sbjct: 242 RIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERN 301 Query: 304 RRSRSAKLRAGMRTVERS 321 RS +LRA R R+ Sbjct: 302 PRSTPVRLRALQRVEHRA 319 >gi|216264839|ref|ZP_03436831.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a] gi|218249331|ref|YP_002374829.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7] gi|221217744|ref|ZP_03589212.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a] gi|224533715|ref|ZP_03674303.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a] gi|225550125|ref|ZP_03771085.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a] gi|226321624|ref|ZP_03797150.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26] gi|226709919|sp|B7J1N4|RSMH_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|215981312|gb|EEC22119.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a] gi|218164519|gb|ACK74580.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7] gi|221192421|gb|EEE18640.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a] gi|224513008|gb|EEF83371.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a] gi|225369237|gb|EEG98690.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a] gi|226232813|gb|EEH31566.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26] Length = 296 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|226226826|ref|YP_002760932.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca T-27] gi|263447553|sp|C1A8A2|RSMH_GEMAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226090017|dbj|BAH38462.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca T-27] Length = 315 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 171/309 (55%), Gaps = 11/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T HVPVLL ++ +L A +LD T G GG++ +F + G V +DRDP A++ + Sbjct: 12 TGTYHVPVLLSEIETMLANAT--TVLDCTLGGGGHTAAFLERGVRVTGVDRDPRALAAAR 69 Query: 76 ETMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +Y+ QF A ++ L++ + D DG++ DLGVSS Q D RGF+F++ Sbjct: 70 ERLGEYERSGQFRAVLANYAALEEAGFSTDDRFDGILLDLGVSSHQFDDASRGFTFREGA 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + A +++N + DL+ +L +E +A+R+A IV+RR+ PF T D Sbjct: 130 PLDMRMGTDADLDAGELLNTIDEVDLSALLRAYADEPRAARMAREIVRRRERRPFATADD 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L I+ + + R FQA+RI VN+E+ L + L + L GG+L ++S+ Sbjct: 190 LVDAIRAVLGP--RSGAPDFARIFQAVRIAVNDELSGLERALPALRDRLTPGGVLAIISY 247 Query: 251 HSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HS EDRLVK F S R + + + +IT+K V T++++ N R+RSA Sbjct: 248 HSGEDRLVKNAFRDWSASCVCPPRQFVCTCRGRPLGDTITRKPVSATEQEIDQNTRARSA 307 Query: 310 KLRAGMRTV 318 +LR R+ Sbjct: 308 RLR-AWRSA 315 >gi|124024959|ref|YP_001014075.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. NATL1A] gi|262824926|sp|A2C000|RSMH_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123960027|gb|ABM74810.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 304 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 31/314 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + +HVPV+ +++I L P +I+DAT G GG+S + +I LD+ Sbjct: 8 SSSNFNHVPVMGKEIIQSLKELPSELTKQGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + + + + + F+ D+ D+ V+ DLGVSS Q+D RGFS Sbjct: 68 DPMAREAASKKLIKFGTRIKIISTNFA---DFSLDEQAICVLADLGVSSHQLDEPSRGFS 124 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ +GP+DMRM+ G SA++++ + ++L ++ LGEEK++ RIA I Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184 Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T ++ + RIHP+TR+FQALRI VNNE+ L L A L G Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L +V+SFHSLEDR VK F + + ++KK + + E++ N Sbjct: 245 LFMVMSFHSLEDRRVKSSFKT-----------------DNRLKVLSKKPIRASPEEIELN 287 Query: 304 RRSRSAKLRA-GMR 316 RS+SAKLR + Sbjct: 288 PRSKSAKLRISAKK 301 >gi|118782145|ref|XP_312082.3| AGAP002831-PA [Anopheles gambiae str. PEST] gi|116129429|gb|EAA07716.4| AGAP002831-PA [Anopheles gambiae str. PEST] Length = 384 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 121/339 (35%), Positives = 170/339 (50%), Gaps = 42/339 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H V+ + + P +V +D TFGAGG++R+ + GS V+ALDRDP A E Sbjct: 44 HRAVMATETVKFFEPQRDQVFIDMTFGAGGHTRALLEAAPGSTVVALDRDPLAHRLACEM 103 Query: 78 MRDYKEQFSLFQATFSQLQDY-------VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + FS+L + DGV+FD G SSMQ D RGFS Sbjct: 104 AAQFPGRIVPLLGRFSELPALLRTVEGLDRQRHFDGVLFDFGCSSMQFDEAARGFSISHD 163 Query: 131 GPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPF 185 GPLDMRM SA++V+ + DL RIL + GEEKQA +IA AIV R Sbjct: 164 GPLDMRMDRDRCPEQLSAAEVLARIQEPDLVRILKVYGEEKQAKKIARAIVNARFTVKRI 223 Query: 186 QTTQDLSSLIQKTVYFSK---------------NNRIHPATRSFQALRIFVNNEIEELAQ 230 +TT +L++++ + + H AT++FQALRIFVNNE+ E+ Sbjct: 224 ETTAELANIVAHCLSQGESAGGQGTYDFRQDKLRRPAHVATKTFQALRIFVNNELNEINY 283 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-------------P 277 G+ A+ L+ GG L+ ++FHSLED +VK+ +A R + Sbjct: 284 GMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQYVSHTLAHETEAM 343 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + K V+VPT E+VA N RSRSAKLRA +R Sbjct: 344 QEMMKPHWKQMHKHVMVPTDEEVADNPRSRSAKLRAAVR 382 >gi|223888788|ref|ZP_03623379.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b] gi|223885604|gb|EEF56703.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b] Length = 296 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SA+++VN + DL ++ L E + +I+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRKISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVVKK 295 >gi|15594651|ref|NP_212440.1| hypothetical protein BB0306 [Borrelia burgdorferi B31] gi|8134806|sp|O51286|RSMH_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2688161|gb|AAC66643.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|312149012|gb|ADQ29083.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi N40] Length = 296 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVVKK 295 >gi|94264627|ref|ZP_01288410.1| methyltransferase [delta proteobacterium MLMS-1] gi|93454922|gb|EAT05163.1| methyltransferase [delta proteobacterium MLMS-1] Length = 301 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 107/318 (33%), Positives = 161/318 (50%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M +AI H PVLLE+V+ L PA G +D G GG++ + ++ D Sbjct: 1 MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122 D A+ + + + + + FS+L+ + + + + + DLG+SS+Q+ G Sbjct: 55 WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQ PLDMRM G SA++++++ + +L I GEE+QA IA +V RQ Sbjct: 115 RGFSFQADEPLDMRMDQRGGESAAEMLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ L+ L+ + V + R IH ATR FQALRI VN E+E L + L A L Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AG V+SFHSLEDRLVK+ FA + +T K V ++++ Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAG-----------------DRRLRVLTGKPVTAGEQEL 277 Query: 301 AFNRRSRSAKLRAGMRTV 318 N R+RSA+LR + Sbjct: 278 GSNPRARSARLRVAEKVA 295 >gi|295698684|ref|YP_003603339.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola USDA] gi|291157297|gb|ADD79742.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola USDA] Length = 310 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 160/306 (52%), Gaps = 14/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 +H+ VL E+VI LN +D TFG GG+S+ + +IA+DRDP ++S + Sbjct: 5 NHIAVLPEEVIEGLNIKRDGTYIDCTFGQGGHSKLILSKLEKKGKLIAIDRDPKSISVAK 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS + + ++ + +G++ DLG+S +QI+ +RGFSF+++G Sbjct: 65 KIK---DSRFIIKHGLFSDIYQFAKEEKIVGKVNGILLDLGISMIQINDENRGFSFRRNG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ GI A + +A +++ IL GEEK++ +I+ +I ++ + Sbjct: 122 SLDMRMNPEVGIPAKKWLEKAKREEIELILRRYGEEKKSRKISRSIFRQNHKKNLKKITS 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++ R HPATR+FQA+RI +NNE+EEL + L + L + V+SF Sbjct: 182 TRQLVEIVSQIVSYKRKHPATRTFQAIRIHINNELEELKEVLEKSLMVLAPLSRIAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLE R++K F + + N + I K + P + +V N +SRSA Sbjct: 242 HSLESRIIKNFIKKYDSNSIINKKTFKKNIPEYIKLKLIEK--IKPKRSEVYKNPKSRSA 299 Query: 310 KLRAGM 315 LR Sbjct: 300 LLRIIQ 305 >gi|171920499|ref|ZP_02931791.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902972|gb|EDT49261.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 308 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 12/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ +I LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKNNTN-VIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S +A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K K + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKKLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMR 316 S+ LR +R Sbjct: 298 SSILRGLIR 306 >gi|33239648|ref|NP_874590.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|42559452|sp|Q7VE18|RSMH_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33237173|gb|AAP99242.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 305 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 161/317 (50%), Gaps = 30/317 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVI 62 S I + H PVL+ +V+ + P ++DAT G GG+S K ++ Sbjct: 4 ESKIVTSKFKHTPVLVNQVLEAIAKLPSELLIKGKLIDATIGGGGHSALILKGFPSLHIT 63 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DP A+ + + + + + + F+ D+VP + V V+ DLGVSS QID Sbjct: 64 GLDQDPSAIDAASKQLLHFGSRAEIISSNFA---DFVPQEEVAFVLADLGVSSPQIDEAK 120 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ +GPLDMRM+ G+ A +++ + K L ++ GEEK + RIA I + Sbjct: 121 RGFSFRLNGPLDMRMNPKKGLKADELLEKTEEKALADLIYKYGEEKFSRRIARRIKQDLS 180 Query: 182 SAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + T+ ++ +N RIHPATR+FQALRI +NNE++ L L+ A L Sbjct: 181 ANGPYEGTSALAYAIAGCYPPKMRNGRIHPATRTFQALRIAINNELDALQHLLQKAPNWL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG+ V+SFHSLEDRLVKK F + IT+K + + Sbjct: 241 LPGGVFAVISFHSLEDRLVKKSF-----------------LTDERLERITRKPIQADSNE 283 Query: 300 VAFNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 284 KLNNPRSRSAKLRLAKK 300 >gi|326771704|ref|ZP_08230989.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505] gi|326637837|gb|EGE38738.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505] Length = 375 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 28/326 (8%) Query: 17 IGDHVPVLLEKVIALLNP---------------APGKVILDATFGAGGYSRSFCKMGS-- 59 +G H PVLLE+ + LL P P V++D T G GG++ + + + Sbjct: 14 VGRHKPVLLERCLDLLAPAIEGAAGSAAAPGPAQP--VMIDCTLGMGGHTEAALERFATL 71 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGV 113 V+ +DRDP A++ + + ++F QAT+ + + VD V+ DLGV Sbjct: 72 KVVGIDRDPEAIALASARLARFGDRFVAVQATYDAVSRVAREHSVRAEGTVDAVLMDLGV 131 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRI 172 SS+Q+D RGFS+ + PLDMRM SG++A D++ A+ +LTRIL GEE+ ASRI Sbjct: 132 SSLQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLEHADAAELTRILRTYGEERFASRI 191 Query: 173 AHAIVKRRQSAPF--QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 A AIV+RR+S T + Q ++ + HPA R+FQALRI VN E++ L + Sbjct: 192 AAAIVRRRESGDPVASTQDLAELVRQSVPAPARRSGGHPAKRTFQALRIAVNAELDVLER 251 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + A +L+ GG L+V S+ SLEDR+VK+ A + + + +T Sbjct: 252 AVPRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEVDRPYLELLTN 311 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ N RS +LRA +R Sbjct: 312 GAEKADARELDHNPRSAPVRLRAAVR 337 >gi|13508054|ref|NP_110003.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129] gi|2496335|sp|P75466|RSMH_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1674216|gb|AAB96169.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129] Length = 308 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 10/308 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + H VLL++VI LN LD T G GG+S+ + + D D +++ Sbjct: 3 SNQPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITF 62 Query: 74 GQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D K A F + DG++ DLGVSS Q+D +RGFSF+ +G Sbjct: 63 CTELFKDKKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAG 122 Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188 P DMRM S +A D++ + + ++LT +L GE IA A+ + T Sbjct: 123 PFDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNPTTV 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ F K + + FQA+RI++N E+E L L+ K L G +V+ Sbjct: 183 EVAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLE++LV+ + + V + F+ ITKK ++PT++++ N R RS Sbjct: 243 VFHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRVRS 299 Query: 309 AKLRAGMR 316 AKL + Sbjct: 300 AKLFVIEK 307 >gi|153006714|ref|YP_001381039.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5] gi|263446704|sp|A7HH59|RSMH_ANADF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152030287|gb|ABS28055.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5] Length = 310 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 115/315 (36%), Positives = 163/315 (51%), Gaps = 29/315 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG------------YSRSFCKMGSNVIALDRD 67 H VL +V+ +L PAPG +S + G+ VI LD+D Sbjct: 7 HASVLAREVVEVLRPAPG------------KLLLDGTLGGGGHSELLLERGARVIGLDKD 54 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 P A++ + + E F +A F ++ + GVDG + DLGVSS Q+D DRG Sbjct: 55 PRALAAATARLARWGEAFRAVRADFRDAKNVLSALGLTGVDGTLVDLGVSSPQLDQADRG 114 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSF + GPLDMRM G D++ + + ++L RIL GEE A IA A+ + +S Sbjct: 115 FSFSRPGPLDMRMGDEGERLEDLLRRIDERELARILREYGEEPFARPIARAVKRAVESDE 174 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T L+ ++ K + RIHPATR+FQALRI VN+E+ LA L L GG Sbjct: 175 ALDTARLADIVAKAIPRKAWPRRIHPATRTFQALRIAVNDELGALAAWLDGLPATLNVGG 234 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+ F + + + + A F +IT+K VV ++ +VA Sbjct: 235 RAAAISFHSLEDRMVKERFRALTQACTCPPDLPVCACGARASFAAITRKAVVASEAEVAE 294 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSAKLRA + Sbjct: 295 NPRARSAKLRAVEKI 309 >gi|326564327|gb|EGE14557.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 103P14B1] gi|326565092|gb|EGE15285.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 46P47B1] gi|326570013|gb|EGE20059.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC7] gi|326574697|gb|EGE24633.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 101P30B1] Length = 330 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 108/328 (32%), Positives = 173/328 (52%), Gaps = 25/328 (7%) Query: 9 MSSAIHHT-IGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58 MS+ I + H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 1 MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60 Query: 59 S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLG 112 + + D+DP A++ + + + + +F+ L + +DG++ DLG Sbjct: 61 APEATLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D G RGFSF + G +DMRM G S+ + + + +L +L GEE+ + + Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 180 IARAIKSMQ---NYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F + Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGKPKR 295 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 V P ++V N R+RSA LR +R+ Sbjct: 296 --VGPCDQEVKANPRARSAWLRGAVRSD 321 >gi|332210617|ref|XP_003254406.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Nomascus leucogenys] Length = 407 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 129/340 (37%), Positives = 184/340 (54%), Gaps = 39/340 (11%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS--FCKMGSNVIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P TQ L+S+ +Y K H AT++FQALRIFVNNE+ EL GL++A Sbjct: 247 PITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYMGLKTA 306 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH- 281 +K L+ GG L+ +SFHSLEDR+VK+F + K + + Sbjct: 307 QKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDYENTEEV 366 Query: 282 -----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 367 SVRRAPLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|68535817|ref|YP_250522.1| S-adenosyl-methyltransferase MraW [Corynebacterium jeikeium K411] gi|88909195|sp|Q4JWA3|RSMH_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68263416|emb|CAI36904.1| S-adenosyl-methyltransferase [Corynebacterium jeikeium K411] Length = 342 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 29/334 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKMGSN--V 61 + G H PV+ ++++ L+ P VI+D T GAGG+S +F + V Sbjct: 1 MSEEHG-HTPVMRDRMVELVGLGVNSENAPARP--VIVDGTLGAGGHSEAFLDAFPHAIV 57 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFS-------------QLQDYVPDKGVDGVV 108 + LDRDP A++ + + ++F +Q F +L V + G+ G + Sbjct: 58 VGLDRDPNALAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFL 117 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D +RGF++ PLDMRM S +A++++N + ++ RIL G+E+ Sbjct: 118 FDLGVSSMQLDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDER 177 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226 A +IA A+V+ R+ PF+ + L L+ T+ S+ HPA R+FQALR+ VN E+E Sbjct: 178 FAGKIASAVVREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELE 237 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L + + L G + + +S+ SLED++VKK S + A F+ Sbjct: 238 SLENLIPEISRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFE 297 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 T+ ++ ++ N R+ ++RA R +R Sbjct: 298 LRTRGAEKASEAEIEQNSRAAPVRVRAYSRVSDR 331 >gi|167972765|ref|ZP_02555042.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167973620|ref|ZP_02555897.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975916|ref|ZP_02558193.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167987809|ref|ZP_02569480.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363028|ref|ZP_02696202.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867888|ref|ZP_03079887.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273780|ref|ZP_03206314.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550865|ref|ZP_03771814.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551533|ref|ZP_03772479.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903084|gb|EDT49373.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209218|gb|EDU06261.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019063|gb|EDU57103.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998230|gb|EDU67327.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659727|gb|EDX53107.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660465|gb|EDX53723.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249535|gb|EDY74317.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379348|gb|EEH01713.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380019|gb|EEH02381.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 308 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 154/309 (49%), Gaps = 12/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 H VLL + I LL+ P + +D TFG GG+S+ +I +D+D A+ Sbjct: 2 EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +D + + F L+ + D VDG VFDLG+SS Q+D +RGFS+ K Sbjct: 62 FANNLFKDNPN-VIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187 LDMRM +A +VN + L I GE K A IA+ IVK R A T Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + + + + + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + IP N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKL--PKEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMR 316 S+ LR ++ Sbjct: 298 SSILRGLVK 306 >gi|209554330|ref|YP_002284822.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|263504480|sp|B5ZBN2|RSMH_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209541831|gb|ACI60060.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 308 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 154/309 (49%), Gaps = 12/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 H VLL + I LL+ P + +D TFG GG+S+ +I +D+D A+ Sbjct: 2 EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +D + + F L+ + D VDG VFDLG+SS Q+D +RGFS+ K Sbjct: 62 FANNLFKDNPN-VIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQT 187 LDMRM +A +VN + L I GE K A IA+ IVK R A T Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + + + + + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILKKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + IP N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKL--PKEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMR 316 S+ LR ++ Sbjct: 298 SSILRGLVK 306 >gi|47459215|ref|YP_016077.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile 163K] gi|51316218|sp|Q6KHR2|RSMH_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|47458544|gb|AAT27866.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile 163K] Length = 302 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 15/309 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+P+LL +V++ N V++D T G G+S+ K +I +D+D A++ Sbjct: 2 ESNVHIPILLNEVLSAFNLKETDVVIDLTLGRAGHSQEMLKKIPKGLLIGIDKDKSAITF 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + F LF + FS++ D + + V+ ++ DLG+SS QID +RGFS+ K Sbjct: 62 SKEKLEQIGSNFKLFHSDFSKISDLLKELKISKVNAILIDLGISSPQIDNANRGFSYNKE 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ A +VN + + L +L E K + +IA I + P +TT Sbjct: 122 SRLDMRMNLDQKLDAHFIVNSYSEEQLKNLLYRNAEIKNSRQIAKII---TSNRPIETTL 178 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS +++K + + P+ FQALR+ VN+EI L L++ L+ G + +++ Sbjct: 179 QLSVILKKYLPAFIVRKKDPSKAVFQALRVEVNDEINSLNFLLKNLVSILEENGKVAIIT 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 F+S+EDR+VKK+F S + F+ K +P+++++ N RS+SA Sbjct: 239 FNSIEDRIVKKYFGSFIKDDV---LAFLPTKKEKEFEV---KTYLPSKKELEENPRSKSA 292 Query: 310 KLRAGMRTV 318 K+R + Sbjct: 293 KMRVLKKIE 301 >gi|257068256|ref|YP_003154511.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM 4810] gi|256559074|gb|ACU84921.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM 4810] Length = 331 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 13/316 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 HVPVLL+ + LL PA G V +DAT G GG++ + ++ +DRDP Sbjct: 9 PAEQRHVPVLLDTSVQLLAPALQDAGAVHVDATLGMGGHAAAVLHAAPRAHLVGIDRDPQ 68 Query: 70 AVSCGQETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 A++ +E + E+ +L AT+ Q+ + + D G GV+ DLG+SS QID DRG Sbjct: 69 ALALARERLDREGVGERATLVHATYDQIPEVLEDLGLPGAHGVMMDLGLSSFQIDTADRG 128 Query: 125 FSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 FS+ PLDMRM G +A+D++ ++ RIL LG+E+ A RIA +V++R+S Sbjct: 129 FSYAVDAPLDMRMDTSSDGPTAADLLRDLPEAEIARILRDLGDERFAKRIARRVVQQRES 188 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP + +L +L+++ + SK + HPA R+FQALRI VN E+E LA L SA + Sbjct: 189 APLTRSGELVALLERAIPAASKASGGHPAKRTFQALRIAVNEELEILASALESALDCVHV 248 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V S+HS EDRLVK F R + H F + + + + + Sbjct: 249 GGRIVVESYHSGEDRLVKTAFTRRIRSSAPPGLPVELEEHKPTFSPLVRGALQADEHERG 308 Query: 302 FNRRSRSAKLRAGMRT 317 N R+ S +LRA RT Sbjct: 309 SNSRAASVRLRALTRT 324 >gi|325962941|ref|YP_004240847.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans Sphe3] gi|323469028|gb|ADX72713.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans Sphe3] Length = 330 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 167/311 (53%), Gaps = 15/311 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGS- 59 M T HVPVL ++ I LL P V +DAT G GG+S + + Sbjct: 1 MDEHQKPTSERHVPVLRDRCINLLAPGFEAARLRGETPVAIDATLGMGGHSEAMLQRFPD 60 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSS 115 ++I +DRD A++ E + + + L A + ++ D + D V G++ DLGVSS Sbjct: 61 LHLIGIDRDEEALALAGERLAPFAARTDLVHAVYDEIPDVLADLGVSEVHGILMDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D +RGF++ PLDMRM G +A+DVVN + ++L RI+ GEEK A RIA+ Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYSEEELVRIIRKWGEEKFAGRIAN 180 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R PF TT +L I+ V + HPA R+FQALRI VN E++ L + + Sbjct: 181 RIVAARAVKPFSTTGELVEQIRSVVPASAAKTGGHPAKRTFQALRIEVNEELDVLERAVP 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A +L GG ++V+S+HSLED++VK RS + + H +++TK Sbjct: 241 AAVDSLAMGGRIVVMSYHSLEDKIVKGVLQGRSKSSAPLGFPVELEEHKPELKTLTKGTE 300 Query: 294 VPTQEDVAFNR 304 VPT ++A N Sbjct: 301 VPTAVEIAENP 311 >gi|320102436|ref|YP_004178027.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644] gi|319749718|gb|ADV61478.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644] Length = 309 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 32/306 (10%) Query: 20 HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 HVPVL + V+ L PG ++LD T GAGG++ + VI LDRDP + Sbjct: 27 HVPVLPQAVLEAL---PGGEVILLDGTVGAGGHAALLARRLTGRGRVIGLDRDPAMLELA 83 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGDRGFSFQKSG 131 + L A++++ ++ + +G+ + L + Q+ RGFSFQ G Sbjct: 84 AR--ATHGLPVELVHASYTEAREVLAARGLTAIDGLLLDLGLSSDQLAWTHRGFSFQNDG 141 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR G +A+D+V Q + + L + GEE+ + R+A IV+ R+ AP TTQ Sbjct: 142 PLDMRFDTTQGETAADLVAQLDAEQLADLFYRYGEERFSRRVARRIVEERRLAPILTTQR 201 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++++++ + + I PATR FQALRI VN E+E L + L + LK GG V+SF Sbjct: 202 LATIVRRAIPG-RRGPIDPATRVFQALRIAVNRELEHLEEFLGGMAELLKPGGRAAVISF 260 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK F + + ITKK +V T E+VA N R+RSAK Sbjct: 261 HSLEDRKVKHAFR-----------------NDPRWTVITKKPIVATPEEVAANPRARSAK 303 Query: 311 LRAGMR 316 LR R Sbjct: 304 LRVAQR 309 >gi|330794884|ref|XP_003285506.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum] gi|325084509|gb|EGC37935.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum] Length = 372 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 177/318 (55%), Gaps = 22/318 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H PV +++V+ +L+P P V +DATFG GG+SR + VIA DRDP ++ Sbjct: 60 HKPVFIKEVLEILDPKPNNVYIDATFGLGGHSRGILESCKDCYVIAFDRDPNVFELTKDL 119 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQK--S 130 YK++ + FS ++ + D ++ ++FD GVSS QID +RGFSF+K Sbjct: 120 RTQYKDRLITIGSRFSSMKSALKDHNLENLKISGILFDYGVSSYQIDTAERGFSFKKELE 179 Query: 131 GPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQ 186 GPLDMRM+ SA+D+VN + ++L I LGEEK +IAH I KR + Sbjct: 180 GPLDMRMNNKNTSQLSAADIVNTFSEQELRDIFYHLGEEKHTRKIAHEILRKRAFGEKIE 239 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L +++ + + ++ +R F++LR++VN+E+ E+ GLR A+ L G L+ Sbjct: 240 TTSQLVKVVECCMPYPAASKT--ISRIFRSLRMYVNDELGEIKYGLREADDILSPGSPLL 297 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KK--VVVPTQEDVAF 302 +SFHS+EDR+VK++ + + + +N + ++ K + P+ E++ + Sbjct: 298 AISFHSMEDRIVKQYL---NNNGLKSDYDTINNNNVIKYELPKSSKHTSPIFPSDEELEW 354 Query: 303 NRRSRSAKLRAGMRTVER 320 N RS+SA LR +RT + Sbjct: 355 NPRSKSAILRWAVRTQNK 372 >gi|306818510|ref|ZP_07452233.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239] gi|304648683|gb|EFM45985.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239] Length = 340 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 16/340 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSNV-- 61 S I T H PVL+++ + LL P P V++DAT G GG+S + + ++ Sbjct: 1 MSTITPTAAIHQPVLVQRCVELLAPALIPVERP--VLVDATVGLGGHSEALLQRFPHLQI 58 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 I +DRD A + + + + + + AT+ QL + + ++ VDG++ DLGVSS+Q+ Sbjct: 59 IGIDRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQL 118 Query: 119 DCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D RGF++ GI+A+ + + ++ R+L GEEK A +IA I Sbjct: 119 DETARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNI 178 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 VK R+ P +TT +L LI+ T+ + + +PA R+FQALR+ VN+E+ +L L +A Sbjct: 179 VKTREVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAA 238 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 AL+ GG L+V S+ SLEDRLVK+ F + + + Q +T+ Sbjct: 239 LDALRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKA 298 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPT 335 ++ N RS+S +LRA + E + + + P Sbjct: 299 DALELQRNSRSQSVRLRAVAKLREMAPHEPKRTNPNPAPR 338 >gi|78778559|ref|YP_396671.1| methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|123554751|sp|Q31D10|RSMH_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78712058|gb|ABB49235.1| methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 300 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 167/318 (52%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61 M + + + +H V+ ++++A L ++ +DAT G GG+S + S++ Sbjct: 1 MQTDLSDSSFFNHKSVMTDEILASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLH 60 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 I LD+DPFA + + ++K + + A F+ D+ P + V V+ DLGV+S QID Sbjct: 61 IIGLDQDPFARKSASKKLDEFKNRIDIRAANFA---DFEPKEKVSFVIADLGVNSNQIDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSFQK GPLDMRM+ + A ++ KDL ++ G+E+ + +IA I Sbjct: 118 PKRGFSFQKDGPLDMRMNPFLEVDAEKLIETLQEKDLANLIYKYGDERLSRKIARKIKMD 177 Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + T + S+ + +IHPATR+FQALRI VN EIE L + L+ Sbjct: 178 LKVNGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQIVPD 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG++ ++SFHSLEDRLVK F + +++TKK + P++ Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSSFK-----------------NDQRLKNLTKKPITPSE 280 Query: 298 EDVAFNRRSRSAKLRAGM 315 ++V N+R+RS KLR Sbjct: 281 QEVEINKRARSGKLRVAQ 298 >gi|269978137|ref|ZP_06185087.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1] gi|269933646|gb|EEZ90230.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1] Length = 340 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 16/331 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSNV-- 61 S I T H PVL+++ + LL P P V++DAT G GG+S + + ++ Sbjct: 1 MSTITPTAAIHQPVLVQRCVELLAPALIPVERP--VLVDATVGLGGHSEALLQRFPHLQI 58 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 I +DRD A + + + + + + AT+ QL + + ++ VDG++ DLGVSS+Q+ Sbjct: 59 IGIDRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQL 118 Query: 119 DCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D RGF++ GI+A+ + + ++ R+L GEEK A +IA I Sbjct: 119 DETARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNI 178 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 VK R+ P +TT +L LI+ T+ + + +PA R+FQALR+ VN+E+ +L L +A Sbjct: 179 VKTREVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAA 238 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 AL+ GG L+V S+ SLEDRLVK+ F + + + Q +T+ Sbjct: 239 LDALRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKA 298 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 ++ N RS+S +LRA + E + + Sbjct: 299 DALELQRNSRSQSVRLRAVAKLREMASHEPK 329 >gi|94266846|ref|ZP_01290506.1| methyltransferase [delta proteobacterium MLMS-1] gi|93452476|gb|EAT03075.1| methyltransferase [delta proteobacterium MLMS-1] Length = 301 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 107/318 (33%), Positives = 160/318 (50%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M +AI H PVLLE+V+ L PA G +D G GG++ + ++ D Sbjct: 1 MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGD 122 D A+ + + + + + FS+L+ + + + + + DLG+SS+Q+ G Sbjct: 55 WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQ PLDMRM G SA++++++ + +L I GEE+QA IA +V RQ Sbjct: 115 RGFSFQADEPLDMRMDQRGKESAAELLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ L+ L+ + V + R IH ATR FQALRI VN E+E L + L A L Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AG V+SFHSLEDRLVK+ FA + +T K V +++ Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAG-----------------DRRLRVLTGKPVTAGDQEL 277 Query: 301 AFNRRSRSAKLRAGMRTV 318 N R+RSA+LR + Sbjct: 278 GSNPRARSARLRVAEKVA 295 >gi|301165427|emb|CBW24998.1| putative S-adenosyl-methyltransferase [Bacteriovorax marinus SJ] Length = 325 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 107/318 (33%), Positives = 169/318 (53%), Gaps = 29/318 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVS 72 H VL ++V+ +L ++ D TFGAGG++ + + +V ++D+DP A+ Sbjct: 5 KHYSVLNKEVVDILMEDSEQLQNIKFADMTFGAGGHTFALAESAKNVSVYSVDQDPDALK 64 Query: 73 CGQETMRDYK--EQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFS 126 G+E + + E+ L F Q +++ + +G+V DLGVSS D GDRGFS Sbjct: 65 NGKENINELGLSERVFLHDMNFEQFPEFIRSSDSEMKFNGIVADLGVSSHHFDEGDRGFS 124 Query: 127 FQKSGPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F+ PLDMRM +A+D+VN + +DL +I GEEK RI +I++ R+SA Sbjct: 125 FRFDAPLDMRMDVDNDELETAADIVNNYSKEDLEKIFFTYGEEKFTHRIVKSILEHRESA 184 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT+ L +I + +I+PAT+ FQALRI VN E++ L + + L+ Sbjct: 185 PIETTKQLEKIIIDCYPKKLQFGKINPATKCFQALRIKVNKELDVLENVIPGLLELLEIN 244 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L +++FHSLEDR+VK F + ++ KK ++P+ ++ Sbjct: 245 GRLAIITFHSLEDRIVKNLFKDAVQSDV-------------PYELYNKKPILPSHGELEE 291 Query: 303 NRRSRSAKLRAGMRTVER 320 N RSRSAKLR + E+ Sbjct: 292 NPRSRSAKLRVITKINEK 309 >gi|308235562|ref|ZP_07666299.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14018] Length = 353 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 + H PVLL+ + L++PA V++D T G G++ +F K + ++ +DRD Sbjct: 1 MKDLSTIHAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 A+ + MR+ E+F A F ++ + D +D DLG+SS+QID D Sbjct: 61 GEALELAIKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEED 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ + LDMRM I+A+ ++ + L I G+E+ + IA IV+ R+ Sbjct: 121 RGFSYSHNTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVRE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L L+ + S +PA R FQALRI VN E+++LA+ L L Sbjct: 181 ETPITTSGQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQ 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V S+HSLED VK+F + + I F+S+T+ V ++E++A Sbjct: 241 GGRIVVESYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQPFFRSLTRGAVKASKEEIA 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 NNTRSSSVRLRAVE 314 >gi|84999750|ref|XP_954596.1| s-adenosyl-methyltransferase [Theileria annulata] gi|65305594|emb|CAI73919.1| s-adenosyl-methyltransferase, putative [Theileria annulata] Length = 389 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 37/327 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+PVLL++ + L P + LD T G GG++ + +I++DRDP +V + Sbjct: 72 EHIPVLLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRINPNGRLISIDRDPESVYFNR 131 Query: 76 ETMRDY--KEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Y + S+ FS + D +P++G G++ DLG+S+ Q++ RGFS+ Sbjct: 132 NRLKTYIDDSRLSVELGKFSGIIDLLKSLKLPNEGYTGIIADLGLSTHQLENSIRGFSYM 191 Query: 129 KSGPLDMRMSCS----------------GISASDVVNQANVKDLTRILGILGEEKQASRI 172 K+GPLDMRMS +A +VN+++ L +I G+E +A+ I Sbjct: 192 KNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVNKSDESTLRKIFKEFGQEPRAASI 251 Query: 173 AHAI-VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A I KRR TT L S++ ++ +++ +R FQALRI VN+E+ EL+ Sbjct: 252 AKKIVEKRRILGEIDTTDKLKSVVMDSLPMFHRSKMRTLSRIFQALRIKVNDELNELSSF 311 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L LK G + +++H+LEDRLVK F + F +TKK Sbjct: 312 LNMIPHLLKYNGRFVCITYHALEDRLVKNSFINLRNLKT----------STVKFNILTKK 361 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTV 318 ++PT+E+V N +SR+AKLR + Sbjct: 362 CILPTREEVESNIKSRTAKLRCIEKVK 388 >gi|311114349|ref|YP_003985570.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14019] gi|310945843|gb|ADP38547.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14019] Length = 358 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 + H PVLL+ + L++PA V++D T G G++ +F K + ++ +DRD Sbjct: 6 MKDLSTIHAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRD 65 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 A+ + MR+ E+F A F ++ + D +D DLG+SS+QID D Sbjct: 66 GEALELAIKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEED 125 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ + LDMRM I+A+ ++ + L I G+E+ + IA IV+ R+ Sbjct: 126 RGFSYSHNTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVRE 185 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L L+ + S +PA R FQALRI VN E+++LA+ L L Sbjct: 186 ETPITTSGQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQ 245 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V S+HSLED VK+F + + I F+S+T+ V ++E++A Sbjct: 246 GGRIVVESYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQPFFRSLTRGAVKASKEEIA 305 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 306 NNTRSSSVRLRAVE 319 >gi|157364289|ref|YP_001471056.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO] gi|262825835|sp|A8F758|RSMH_THELT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157314893|gb|ABV33992.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO] Length = 292 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 163/307 (53%), Gaps = 30/307 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPV++++V++ + V LD T GAGG+S + + GS VI +D D +S ++ Sbjct: 5 HVPVMVKEVLSYFSNLR-GVFLDCTVGAGGHSEAILENIKGSVVIGIDVDEEILSVAKQR 63 Query: 78 MRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y+ + L +AT+ + Q + K V+G++ DLGVS++Q+ G+RGF+F GP Sbjct: 64 LKKYESEGRAKLLKATYVEAQRVLSQLGVKAVNGIIMDLGVSTLQLMKGERGFAFSSDGP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +A D+VN L RI GEEK+ ++ P +TT L Sbjct: 124 LDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRY--AGRIARFIVKNRPVETTAKL 181 Query: 192 SSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I + + + R H ATR FQA+RI VNNE+E L L L G +IV+S Sbjct: 182 VEVIARALPEKERRFRRRHFATRVFQAIRIAVNNELENLRNFLVQVPDILNQNGRIIVIS 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+ F S +T+K V P+ E+V N ++RSA Sbjct: 242 FHSLEDRIVKEAFRS-----------------IQELDVLTRKPVRPSLEEVRENPKARSA 284 Query: 310 KLRAGMR 316 K+R R Sbjct: 285 KMRIAER 291 >gi|227875248|ref|ZP_03993390.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|307700815|ref|ZP_07637840.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16] gi|227844153|gb|EEJ54320.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|307613810|gb|EFN93054.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16] Length = 340 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 16/331 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSNV-- 61 S I T H PVL+++ + LL P P V++DAT G GG+S + + ++ Sbjct: 1 MSTITPTAAIHQPVLVQRCVELLAPALIPVERP--VLVDATVGLGGHSEALLQRFPHLQI 58 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 I +DRD A + + + + + + AT+ QL + + ++ VDG++ DLGVSS+Q+ Sbjct: 59 IGIDRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQL 118 Query: 119 DCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D RGF++ GI+A+ + + ++ R+L GEEK A +IA I Sbjct: 119 DETARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNI 178 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 VK R+ P +TT +L LI+ T+ + + +PA R+FQALR+ VN+E+ +L L +A Sbjct: 179 VKTREVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAA 238 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 AL+ GG L+V S+ SLEDRLVK+ F + + + Q +T+ Sbjct: 239 LDALRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKA 298 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 ++ N RS+S +LRA + E + + Sbjct: 299 DALELQRNSRSQSVRLRAVAKLREMAPHEPK 329 >gi|86606931|ref|YP_475694.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab] gi|123505404|sp|Q2JSF0|RSMH_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86555473|gb|ABD00431.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 163/314 (51%), Gaps = 35/314 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H VL E V+A L P G LD T G GG+S + + G+ V+ LDRDP A+ Q + Sbjct: 16 HESVLTEAVVAYLQPQQGGAFLDVTLGGGGHSLALLQRGADRVVGLDRDPTALQAAQARL 75 Query: 79 R---DYKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + L+ F+ + DG+V DLGVSS Q+DC +RGFSF Sbjct: 76 AAAGIPGNRLQLWHLNFADFDLQRHGFRDERGQGIPFDGIVADLGVSSPQLDCPERGFSF 135 Query: 128 QKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM +A+D VN+ V+DL I GEE+ A RIAH I + R Sbjct: 136 RAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGEERFARRIAHHIERSRPLF-- 193 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++ + V ++ RIHPATR FQALRI VN E+E L L A LK GG Sbjct: 194 -TTTQLAHVVWQAVPPAARRGRIHPATRIFQALRIAVNRELEALETLLAQAPNWLKPGGR 252 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDRLVK F + +Q +T K + P++ + N Sbjct: 253 LAVISFHSLEDRLVKWAFRT-----------------DPRWQVLTPKPLCPSELEQQRNS 295 Query: 305 RSRSAKLRAGMRTV 318 R+RSAKLR R+ Sbjct: 296 RARSAKLRVAARSS 309 >gi|271964366|ref|YP_003338562.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium roseum DSM 43021] gi|270507541|gb|ACZ85819.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium roseum DSM 43021] Length = 330 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H G HVPV+LE+V+ LL PA P V++DA G GG++ + ++I +DRDP Sbjct: 11 HAPGGHVPVMLERVLELLAPALAGPAPVVVDANLGLGGHAEALLAAHPSLHLIGIDRDPT 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ + Y E+ +L +A +L + + + VD V+FDLGVSS Q+D +RGF+ Sbjct: 71 AIERSTARLAPYAERTTLVRAVSDELTEVLAEAGRPRVDAVLFDLGVSSPQLDEAERGFA 130 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM +A VVN + +L RIL GEE+ A R+A I+K R + Sbjct: 131 YSYDAPLDMRMDRDQELTAEIVVNTYSAAELIRILRDYGEERFAPRVARLIIKERGNEAI 190 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ L+ +++ + ++ +PA R+FQALRI VN E+ L + L +A AL GG Sbjct: 191 TSTKRLAEIVRTAIPAATRRTGGNPAKRTFQALRIEVNAELTALERALPAALDALTLGGR 250 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+++HSLEDRL K+ A+R+ + +P AH F +T+ +P++E+VA N Sbjct: 251 VVVLAYHSLEDRLTKQVLAARTRETGPPGLPVPLPAHQPRFALLTRGAELPSEEEVARNP 310 >gi|326382552|ref|ZP_08204243.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL B-59395] gi|326198671|gb|EGD55854.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL B-59395] Length = 339 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 16/325 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59 M+S G HVPV+ +++ ALL PA G V++D T GAGG++ F Sbjct: 1 MNSPQQGDHG-HVPVMADRMFALLEPALTRVSADGTGAVLVDGTLGAGGHTEYFLDRLDG 59 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSS 115 VIA+DRD A+ E + + ++ + +++D V VDGV+ DLGVSS Sbjct: 60 LYVIAIDRDTSAIGIASERLGRFGDRVEFHHNRYDEIEDVVHAAGRTVVDGVLLDLGVSS 119 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQ+D +RGF++ PLDMRM+ +A+D++N + L R+L GEE+ A +IA Sbjct: 120 MQLDRAERGFAYAVDAPLDMRMNADDELTAADILNTYDHGALARVLSEYGEERFAGKIAS 179 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 A+V+ R PF T+ L L+ T+ ++ HPA R+FQALRI VN+E++ L + Sbjct: 180 AVVRERAKEPFTTSGRLVELLYATIPAATRRTGGHPAKRTFQALRIEVNHELDSLRGVIP 239 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 ++ + L GG L V+S+ SLEDR+VK+ FA + F +T+ Sbjct: 240 ASLEVLGIGGRLAVMSYQSLEDRIVKRDFARAVENTTPAGLPVDLPGTAPEFSLVTRGAE 299 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 + A N RS ++RA R Sbjct: 300 QADAAERAANPRSAPVRIRAIERIA 324 >gi|183508652|ref|ZP_02958151.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676119|gb|EDT88024.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 308 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ +I LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKNNTN-VIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S +A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFVKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMR 316 S+ LR +R Sbjct: 298 SSILRGLIR 306 >gi|330723232|gb|AEC45602.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis MCLD] Length = 298 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 147/306 (48%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL++VI LN + LD T G GG+S K +I D+D A+ +E Sbjct: 3 HIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKEK 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + F + VDGV+ DLGVSS Q+D +RGFS+ K LD Sbjct: 63 LLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARLD 122 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ SA ++VN+ + + L I G+ A+ IA I + P T +L Sbjct: 123 MRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAEDI---VKLRPITYTTELVD 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ ++ + +PA FQA+RI VN E+E L L +K LK G L +++FHSL Sbjct: 180 IIKHSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 ED++VK +F + + T Q+++ N+R++SAKLR Sbjct: 240 EDKIVKNYFKQLLKQNQT---LFFETTQAKYLVKTT----WANQKEIDNNKRAKSAKLRV 292 Query: 314 GMRTVE 319 + + Sbjct: 293 LTKLIN 298 >gi|186701697|ref|ZP_02971391.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700956|gb|EDU19238.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 308 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ +I LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKNNTN-VIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S +A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMR 316 S+ LR +R Sbjct: 298 SSILRGLIR 306 >gi|304373145|ref|YP_003856354.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis HUB-1] gi|304309336|gb|ADM21816.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis HUB-1] Length = 298 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL++VI LN + LD T G GG+S K +I D+D A+ +E Sbjct: 3 HIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKEK 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + F + VDGV+ DLGVSS Q+D +RGFS+ K LD Sbjct: 63 LLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARLD 122 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ SA ++VN+ + + L I G+ A+ IA I + P T +L Sbjct: 123 MRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAENI---VKLRPITYTTELVD 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I++++ + +PA FQA+RI VN E+E L L +K LK G L +++FHSL Sbjct: 180 IIKQSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 ED++VK +F + + T Q+++ N+R++SAKLR Sbjct: 240 EDKIVKNYFKQLLKQNQT---LFFETTQAKYLVKTT----WANQKEIDNNKRAKSAKLRV 292 Query: 314 GMRTVE 319 + + Sbjct: 293 LTKLIN 298 >gi|257453541|ref|ZP_05618831.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60] gi|257448999|gb|EEV23952.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60] Length = 319 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 107/325 (32%), Positives = 166/325 (51%), Gaps = 28/325 (8%) Query: 12 AIHHTIGDHVPVLLEKVI-ALLN----------PAPGKVILDATFGAGGYSRSFC---KM 57 + H VLL++ + ++LN +DATFG GG+SR Sbjct: 2 TVSAPEFIHETVLLKETVASVLNVTVAALETGIIKKTGTFVDATFGRGGHSRLLLTYLDK 61 Query: 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVS 114 S ++ D+DP A+ Q + + + +F++LQD + + VDG++ DLGVS Sbjct: 62 DSRLLVFDKDPQAIQTAQA-LAASDARVIVIHDSFAKLQDNLQRLGIEQVDGIMADLGVS 120 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S Q+D G RGFSF + G +DMRM G S + + + + L +L GEE+ + RIA Sbjct: 121 SPQLDDGSRGFSFMRDGAVDMRMDTTRGESVAQWLKRVDETVLADVLYNYGEERHSRRIA 180 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI + + +T L+ I++ + + HPAT+SFQA+RIF+NNE+ ++ L Sbjct: 181 RAIKQME---HYDSTLALAETIKQAHPNWQKGK-HPATQSFQAMRIFINNELGDIDSFLA 236 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + ALK GG L V+SFHSLEDR++K+F S +P P + ++ K Sbjct: 237 QSLIALKVGGRLAVISFHSLEDRIIKQFLQKHSKGQYPEDANLPM--PPKRPKLLS-KPE 293 Query: 294 V--PTQEDVAFNRRSRSAKLRAGMR 316 P ++ N R+RSA LR+ R Sbjct: 294 RVAPLATEIKTNPRARSALLRSATR 318 >gi|224534257|ref|ZP_03674835.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S] gi|224514359|gb|EEF84675.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S] Length = 295 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 169/305 (55%), Gaps = 23/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPLKSNLIYIDSTLGEGVHAKAILEKYGFLSLVGIERDSQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ +R ++ + + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLRIFEGRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKGSKKGFSFFEDEPL 126 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ ISA+++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSCSISAAEIVNTFSRYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKELQ 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FHS Sbjct: 187 SIISKVYPFSK-FKINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKLR Sbjct: 246 IEDRIVKDFFKSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKLR 290 Query: 313 AGMRT 317 A + Sbjct: 291 ALKKI 295 >gi|13357947|ref|NP_078221.1| hypothetical protein UU386 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762354|ref|YP_001752469.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|20139253|sp|Q9PQA4|RSMH_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504475|sp|B1AJ25|RSMH_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|11278383|pir||D82897 conserved hypothetical UU386 [imported] - Ureaplasma urealyticum gi|6899371|gb|AAF30796.1|AE002136_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827931|gb|ACA33193.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 308 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ +I LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKNNTN-VIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S +A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + + + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMR 316 S+ LR +R Sbjct: 298 SSILRGLIR 306 >gi|225549158|ref|ZP_03770133.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a] gi|225370384|gb|EEG99822.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a] Length = 296 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ ++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFGEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|257458736|ref|ZP_05623859.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268] gi|257443724|gb|EEV18844.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268] Length = 311 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+PVL + IA + ++D T G GG+S + +IA DRD A+ Sbjct: 1 MQAPHIPVLFSQTIAAFSQLEDGYVIDCTLGYGGHSEGILTANPHLKLIACDRDAEAIEF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + +K++ + +A FS++ +P++ V G++ D+GVSS+Q+D RGFS + Sbjct: 61 SRERLSKFKDRIEIHKAKFSEILKILPEQKLRAVRGILADIGVSSLQLDKNCRGFSTKSD 120 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 + + A+ VVN+ + DL RI GE A+ IA I R +AP + + Sbjct: 121 ALDMRMDESAALDAAYVVNRYSQADLARIFREYGELTNANAIAAKIATARTNAPLTSAKA 180 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA----GGLLI 246 L++LI K I AT +FQA+RI VN+E+ EL + L E+ + + Sbjct: 181 LANLIG--TKPVKGRSISTATLAFQAIRIEVNDELGELKRLLTLIEQKSRDSILTNATVA 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++SFHSLEDR+VK+ F + + ++ + +TK + +++A N Sbjct: 239 IISFHSLEDRIVKEQFKAWERDCVCPSEFMRCECGGDHSLGKILTKSPLTADAQELAQNS 298 Query: 305 RSRSAKLRAGM 315 R+ SAKLR Sbjct: 299 RAASAKLRIFR 309 >gi|189485180|ref|YP_001956121.1| SAM-dependent methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|263504473|sp|B1GZH8|RSMH_UNCTG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170287139|dbj|BAG13660.1| SAM-dependent methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 291 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 21/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PV+ + L PG + +D TFG GG++ ++A D D + E Sbjct: 3 HIPVMPLETSRYLIGKPGGLYVDCTFGGGGHALYLLDKFKDIKIVAFDWDEDSSKRFIER 62 Query: 78 MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++ + + + F ++ + VDG++ D+GVSS Q DRGFSF Sbjct: 63 EKEFSGRVTFIRDNFKNVKKALSALNISKVDGILADIGVSSKQFGDLDRGFSFNSGTLDM 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 +G A +VVN + +DL I GEE+++ +IA AI+ RR+ T +L ++ Sbjct: 123 RMDKRNGFEAKEVVNSYSYEDLADIFYKYGEERKSRQIASAILLRRKRGIINTASELQTV 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I RI+PAT+ FQALRIFVN+E+E LA L A + L AGG +++SFHSLE Sbjct: 183 ICSVKRP--EGRINPATKVFQALRIFVNSELENLAVLLSDAPELLNAGGRTVIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ F S +++ +TKKVV +E+V N SRSA++RA Sbjct: 241 DRIVKQNFKRNSECG--------------IYKILTKKVVTALKEEVKINPGSRSARIRAA 286 Query: 315 MRTV 318 +T Sbjct: 287 EKTS 290 >gi|86740113|ref|YP_480513.1| S-adenosyl-methyltransferase MraW [Frankia sp. CcI3] gi|123737617|sp|Q2JD58|RSMH_FRASC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86566975|gb|ABD10784.1| methyltransferase [Frankia sp. CcI3] Length = 321 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 169/314 (53%), Gaps = 11/314 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 L ++V+ LL PA G +++DAT G GG++ + ++ LDRDP A+ E + Sbjct: 2 LTDRVLTLLAPALRASGAIVVDATVGLGGHAAAVLTAFPHVRLVGLDRDPDALERSGERL 61 Query: 79 RD-YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + L A + ++ + + V G++FDLGVSS+Q+D DRGF++ + PLD Sbjct: 62 HGLAPGRVELVHAVYDEVAEILDRLGHPVVQGILFDLGVSSLQLDTDDRGFAYSRDAPLD 121 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G +A+DV+N + LTRIL GEE+ A RIA AIV+ R PF T+ L+ Sbjct: 122 MRMDQTRGRTAADVLNTYDADALTRILREYGEERFARRIAGAIVQARAVTPFATSARLAD 181 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++ + + +PA R+FQALRI VN E++ LA+ L +A AL G L+V+S+HS Sbjct: 182 LVRDAIPAPARRTGGNPAKRTFQALRIEVNAELDVLARALPAAFDALAVSGRLVVLSYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+ + + + + +T+ ++ + A N R+ S +LR Sbjct: 242 LEDRLVKRQLRGYAEASVPPDLPVVPEGAGPRLRWLTRGAEPASETEKAENPRAASVRLR 301 Query: 313 AGMRTVERSIEDDS 326 A RT Sbjct: 302 AVERTAPNPDHTRK 315 >gi|260578096|ref|ZP_05846017.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Corynebacterium jeikeium ATCC 43734] gi|258603735|gb|EEW16991.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Corynebacterium jeikeium ATCC 43734] Length = 342 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 29/334 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKMGSN--V 61 + G H+PV+ ++++ L+ P VI+D T GAGG+S +F + V Sbjct: 1 MSEEHG-HIPVMRDRMVELVGLGVNSENAPARP--VIVDGTLGAGGHSEAFLDAFPHAIV 57 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFS-------------QLQDYVPDKGVDGVV 108 + LDRDP A++ + + ++F +Q F +L V + G+ G + Sbjct: 58 VGLDRDPNALAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFL 117 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D +RGF++ PLDMRM S +A++++N + ++ RIL G+E+ Sbjct: 118 FDLGVSSMQLDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDER 177 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226 A +IA A+V+ R+ PF+ + L L+ T+ S+ HPA R+FQALR+ VN E+E Sbjct: 178 FAGKIASAVVREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELE 237 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L + + L G + + +S+ SLED++VKK S + A F+ Sbjct: 238 SLENLIPEISRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFE 297 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 T ++ ++ N R+ ++RA R +R Sbjct: 298 LRTSGAEKASEAEIEQNSRAAPVRVRAYSRVSDR 331 >gi|260435603|ref|ZP_05789573.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109] gi|260413477|gb|EEX06773.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109] Length = 294 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 161/307 (52%), Gaps = 28/307 (9%) Query: 20 HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 H PVL + V+ P P +++DAT G GG+S + +I LD+D A + Sbjct: 6 HEPVLADAVLDAARQIPRPDGLLIDATLGGGGHSARLLQQHPSLRLIGLDQDATARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + + S+ F+ DYVP + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLAPFGARVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQSAPFQTTQDL 191 RM+ G +A++++++ +L ++ GEE+ + RIA I + + + T Sbjct: 123 RMNASGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDKGSYEGTAALA 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GLL ++SFH Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPEGLLGIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + IT+K VV T+++ N RSRSAKL Sbjct: 243 SLEDRRVKTAF-----------------LRDERLKRITRKPVVATEQEEEANPRSRSAKL 285 Query: 312 RAGMRTV 318 R R Sbjct: 286 RVAQRLN 292 >gi|156083547|ref|XP_001609257.1| S-adenosyl methyltransferase [Babesia bovis T2Bo] gi|154796508|gb|EDO05689.1| S-adenosyl methyltransferase, putative [Babesia bovis] Length = 420 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 106/328 (32%), Positives = 156/328 (47%), Gaps = 39/328 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL++ + +L P LD T G GG++ + K+ ++ALDRDP +V + Sbjct: 98 HEPVLLKEALDMLVIDPDGRYLDLTLGYGGHTEAILKLLSPKGVLVALDRDPESVYYTSK 157 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + Y +Q TFS L + G++ DLG+S+ Q++ RGF++ Sbjct: 158 RLEQYVRSKQLVPVIGTFSNLNSVLESNNLPLKDYTGIIADLGISTHQLEDPKRGFAYNT 217 Query: 130 SGPLDMRMSCS------------------GISASDVVNQANVKDLTRILGILGEEKQASR 171 GPLDMRMS G A ++N+ +D+ +L GEE +A Sbjct: 218 DGPLDMRMSNPLYDPFNPRDDIVKPNLDTGNIAFKLINKGREQDIAYVLREYGEEPRAII 277 Query: 172 IAHAI-VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I KR++ TT L ++ V + + +R FQALRI+VNNE++ELA Sbjct: 278 IARRIVEKRQRLGEIATTFQLRDIVLSCVRGNHKAGMKTLSRVFQALRIYVNNELDELAH 337 Query: 231 GLRSAEKA-LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 L A G +V+S+HSLEDR VK F ++ IT Sbjct: 338 LLDHAPSILNPKQGRFVVISYHSLEDRAVKHAFTGLQKLKTMSND---------SYKVIT 388 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 KK V PT E+ N+++RSAKLR R+ Sbjct: 389 KKCVTPTLEECTSNQKARSAKLRCLERS 416 >gi|206896128|ref|YP_002247018.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus DSM 5265] gi|263446122|sp|B5Y8C1|RSMH_COPPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206738745|gb|ACI17823.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus DSM 5265] Length = 299 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 23/304 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 +H PV+ ++V LL + +DAT G+GG+ + I +D DP AV E Sbjct: 6 EHKPVMAKQVAELLVSNEEGIYVDATAGSGGHLGLLANTYPEASFIGIDIDPEAVKFLTE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L D + VDG++ DLG+S Q RGFS + GPL Sbjct: 66 KFAGVSN-VRIIRGNYADLPDILHSMEIGQVDGILLDLGISMHQALSAQRGFSIKNPGPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR S +A ++VN + + L I+ GEE++A +IA A+V+ R+ P +TT +L+ Sbjct: 125 DMRFSIDQKVTAYELVNSLSEEQLADIIYRYGEERRARKIAKAVVEARKVKPLETTDELA 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ +TV + RIHPATR FQALRI N E++ L L + LK GG L V+S+HS Sbjct: 185 DLVARTVGY--RGRIHPATRVFQALRIATNRELDNLQVALPRIFQVLKEGGRLAVISYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+FF + + +R +TKKVV P+ E++ N SRSAKLR Sbjct: 243 LEDRIVKQFFKTWEEEGKGLR--------------LTKKVVKPSLEEINENPSSRSAKLR 288 Query: 313 AGMR 316 + Sbjct: 289 VFKK 292 >gi|123967726|ref|YP_001008584.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. AS9601] gi|262824992|sp|A2BNW6|RSMH_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123197836|gb|ABM69477.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. AS9601] Length = 300 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 107/318 (33%), Positives = 170/318 (53%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61 M + + + +H V+ ++++A L ++ +DAT G GG+S + S++ Sbjct: 1 MQTDLSDSSFFNHQSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLN 60 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 I LD+DPFA + + ++K + + + F+ D+VP + V V+ DLGV+S QID Sbjct: 61 IIGLDQDPFARKSASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSFQK GPLDMRM+ + A ++ N KDL ++ GEE+ + +IA I Sbjct: 118 PKRGFSFQKDGPLDMRMNPFLDVDADKLIEALNEKDLANLIYKYGEERLSRKIARKIKLD 177 Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + T + S+ + +IHPATR+FQALRI VN EIE L + L+ + Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPE 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG++ ++SFHSLEDRLVK F + +++TKK + P++ Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSCFK-----------------NDQRLKNLTKKPITPSE 280 Query: 298 EDVAFNRRSRSAKLRAGM 315 +++ N+R+RS KLR Sbjct: 281 QEIELNKRARSGKLRIAQ 298 >gi|187251661|ref|YP_001876143.1| putative S-adenosylmethionine-dependent methyltransferase [Elusimicrobium minutum Pei191] gi|263447006|sp|B2KE60|RSMH_ELUMP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|186971821|gb|ACC98806.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Elusimicrobium minutum Pei191] Length = 293 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 26/307 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVL +++ +L V +D T G GG+++ + +I D+D AV + Sbjct: 5 THIPVLTKEIGQMLITDINGVYIDGTLGLGGHTKYLLGLLGKEAKIIGFDKDYNAVKMAE 64 Query: 76 ETMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + + ++ L+D G DGV+ DLG+SS Q+D RGFSF G Sbjct: 65 ANVAD--GRLTAINLSYEAAPKVLKDLKIQGGADGVLLDLGLSSYQLDDASRGFSFMGGG 122 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR SG +A+DVVN ++L RI GEE A A AIV+ R +TT + Sbjct: 123 PLDMRFDISGQKTAADVVNSYTAEELERIFANYGEETNARNAAAAIVRARVDKKIKTTSE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++++ + + + H ATR FQALRI VN+E+ + + ++ + LK GG V++F Sbjct: 183 LANILAPVLP--RRGKTHGATRVFQALRIEVNDELGTVERFIKVLPEVLKPGGRAAVITF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F S + + + K V+ P E+V NRRSRSAK Sbjct: 241 HSLEDRIVKNIFKQMSAEGEV--------------KLVNKHVIEPEWEEVKNNRRSRSAK 286 Query: 311 LRAGMRT 317 LR + Sbjct: 287 LRVAEKI 293 >gi|282857251|ref|ZP_06266491.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455] gi|282584901|gb|EFB90229.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455] Length = 313 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 167/318 (52%), Gaps = 23/318 (7%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 +HVPVLL KV+ ++ +I+D T G GGYS +F K V+ +DRD A + Sbjct: 1 MEFEHVPVLLAKVVESMDLKADALIVDGTLGLGGYSEAFLKRSPRWRVVGIDRDERARNI 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + E+F F + + VD VV DLGVS+MQ+ G RGFSF++ Sbjct: 61 ACQRLAPFGERFLALDGDFRNIGGLCASVGIRAVDCVVLDLGVSNMQLADGRRGFSFRED 120 Query: 131 GPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + SAS++VN+ + L I GEE+ A IA IVK R P +T Sbjct: 121 GPLDMRMNPAEGTRSASELVNELPRESLADIFRKYGEERFAWSIAGEIVKERLKRPITST 180 Query: 189 QDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +L +I++ + + HPA + FQALR+ VN+E+ L QGL A L G L+ Sbjct: 181 AELVEVIRRGIPAPVMRKMNGHPARKVFQALRVAVNDELGALEQGLDEAFSLLAEEGRLL 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV++HSLEDR+VK+ F + + V +K VP E+V N +S Sbjct: 241 VVTYHSLEDRIVKRRFREWNEEGKGVLEP--------------RKGQVPDDEEVERNPKS 286 Query: 307 RSAKLRAGMRTVERSIED 324 RSA+LR ++ + + Sbjct: 287 RSARLRGFLKKNVPNKAE 304 >gi|148240649|ref|YP_001226036.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803] gi|262825757|sp|A5GP74|RSMH_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147849188|emb|CAK24739.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803] Length = 305 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 159/317 (50%), Gaps = 31/317 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + HVPVL + ++ L+ P +++DAT G GG+S +I LD+ Sbjct: 8 TDSTFRHVPVLADVLLNALDEEPSVHWQSGLVVDATLGGGGHSSLLLDRYPDLRLIGLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + + +KE+ S+ F+ DY P + V+ DLGVSS Q+D RGFS Sbjct: 68 DPTARAAAATRLSPWKERVSIVATNFA---DYSPPQSASLVLADLGVSSPQLDVAARGFS 124 Query: 127 FQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182 F+ GPLDMRM+ G +A +++ + DL ++ GEE+ + RIA I Q Sbjct: 125 FRLDGPLDMRMNPESDGETAGELIERMEESDLADLIYAYGEERLSRRIARRIKADLAAQG 184 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T ++ ++ RIHPATR+FQALRI VN+E+ L Q L SA L+ G Sbjct: 185 PYAGTASFAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDQLLSSAPGWLQPG 244 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 GLL ++SFHSLEDR VK F IT++ +V + E+ Sbjct: 245 GLLAIISFHSLEDRRVKTAF-----------------LQDERLDRITRRPLVASAEEQER 287 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR + E Sbjct: 288 NPRSRSAKLRIARKRSE 304 >gi|284931424|gb|ADC31362.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. F] Length = 313 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + LD T G GG+S + +I D+D A++ ++ Sbjct: 9 HYPVLLKEVIENLITIKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLQAIAHCKQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ SL F L+ + +DG + DLGVSS Q+D DRGFS+ G L Sbjct: 69 LFSEFNN-VSLINDNFVNLKKHLQLMQIDKIDGCLIDLGVSSYQLDRADRGFSYHSLGRL 127 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + A+ ++ + V +L +I+ GE K R+ A+ K + T + + Sbjct: 128 DMRMDQNKEVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLEVVE 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + HPA R FQALRI VNNE+E L + L L GG + +++FHS Sbjct: 188 LIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFHS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LE+++VKK F + ++ ++ +N + + K + PTQ ++ NRRSRSAKL Sbjct: 248 LEEKIVKKVFRHLA-STSSLNNLPINNELLKKYHNHFNKGLSPTQSELETNRRSRSAKLF 306 Query: 313 AGMRTVE 319 + Sbjct: 307 VLEKINN 313 >gi|300858822|ref|YP_003783805.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686276|gb|ADK29198.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302206527|gb|ADL10869.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis C231] gi|302331082|gb|ADL21276.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis 1002] gi|308276769|gb|ADO26668.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis I19] Length = 351 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 113/329 (34%), Positives = 171/329 (51%), Gaps = 23/329 (6%) Query: 20 HVPVLLE---KVIALLNPAPG--KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 HVPVL E ++I+ G VILD T GAGG+S F + VI LDRD +++ Sbjct: 19 HVPVLRERMAELISAPVIKMGTSAVILDGTLGAGGHSAFFLESFPEACVIGLDRDLHSLN 78 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------------VDGVVFDLGVSSMQI 118 +E + Y ++F F + + G +FDLGVSSMQ+ Sbjct: 79 NARERLSIYGDRFLGIHTRFDHFLPKLQQHAEAGDEIALKALRHGISGALFDLGVSSMQL 138 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF+++ PLDMRM GI+A+D++N + DL RIL + GEE+ A +IA A+V Sbjct: 139 DQAERGFAYRVDAPLDMRMDDSKGITAADILNTYSHGDLARILKVYGEERFAGKIASAVV 198 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 K R+ APF + L L+ T+ ++ HPA R+FQALRI VN E+E + L Sbjct: 199 KEREKAPFTHSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNKELESIENVLPVVT 258 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + +S+ SLED++VK++F S + A F+ +T+ Sbjct: 259 GCLAKGGRAVFMSYQSLEDKIVKRYFVDISTSKSPPGLPMDLPGMEAGFKVVTRGAEKAN 318 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDD 325 ++++A N R+ S ++RA E + D+ Sbjct: 319 EQEIAENPRAASVRVRAIESLKESTTADE 347 >gi|262831569|sp|A0PTJ6|RSMH_MYCUA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 345 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 18/317 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVL ++ + LL PA V++DAT GAGG++ F +I LDRDP Sbjct: 15 HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L Y + +DG +FDLGVSSMQ+D +R Sbjct: 75 ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ K PLDMRM+ S +D++N + L IL GEE+ A RIA I++RR Sbjct: 135 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L +L+ + + + + HPA R+FQALRI VN+E+ L + +A AL Sbjct: 195 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA V + H F+S+T +V Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 314 Query: 302 FNRRSRSAKLRAGMRTV 318 N RS +LRA R Sbjct: 315 HNPRSAPVRLRALQRLE 331 >gi|118618804|ref|YP_907136.1| S-adenosyl-methyltransferase MraW [Mycobacterium ulcerans Agy99] gi|118570914|gb|ABL05665.1| methyltransferase [Mycobacterium ulcerans Agy99] Length = 395 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 18/317 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVL ++ + LL PA V++DAT GAGG++ F +I LDRDP Sbjct: 65 HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 124 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L Y + +DG +FDLGVSSMQ+D +R Sbjct: 125 ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 184 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ K PLDMRM+ S +D++N + L IL GEE+ A RIA I++RR Sbjct: 185 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 244 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L +L+ + + + + HPA R+FQALRI VN+E+ L + +A AL Sbjct: 245 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA V + H F+S+T +V Sbjct: 305 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 364 Query: 302 FNRRSRSAKLRAGMRTV 318 N RS +LRA R Sbjct: 365 HNPRSAPVRLRALQRLE 381 >gi|300780824|ref|ZP_07090678.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC 33030] gi|300532531|gb|EFK53592.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC 33030] Length = 333 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 166/319 (52%), Gaps = 20/319 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H+PV+ +++ LL PA P VI+D T GAGG++ F +VI +DRD A++ Sbjct: 13 HIPVMRDRMGELLRPAVERFGPHAVIVDGTLGAGGHTEYFLDTFPEASVIGIDRDGAALA 72 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV-----------VFDLGVSSMQIDCG 121 E + + ++F+ + F L + + D FDLGVSSMQ+D Sbjct: 73 QAGERLARFGDRFAPVRGRFDCLAESLRDGTGPVFETVRAHGLAGAFFDLGVSSMQLDQE 132 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S GI+A+DV+N + DL +L G+E+ A +IA A++ R Sbjct: 133 ERGFAYRVDAPLDMRMDPSAGITAADVLNTYSHGDLAHVLKAYGDERFAGKIASAVLDER 192 Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + APF T+ L L+ + + ++ HPA R+FQALR+ VN E++ L L +AL Sbjct: 193 EKAPFDTSARLVELLYRVIPAATRRTGGHPAKRTFQALRVEVNRELDALTNVLPMVAEAL 252 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ S ED+LVK+ F + A F+ +T + + Sbjct: 253 GPGGRAVFMSYQSHEDKLVKRAFTEWTTSKTPAGLPTELPGMAAEFRMVTHGAEKASVAE 312 Query: 300 VAFNRRSRSAKLRAGMRTV 318 V NRR+ ++RA + Sbjct: 313 VEVNRRAAPVRVRAVEKLE 331 >gi|126695529|ref|YP_001090415.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|262824906|sp|A3PAN9|RSMH_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126542572|gb|ABO16814.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 300 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 170/318 (53%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61 M + + + +H V+ ++++A L ++ +DAT G GG+S + S++ Sbjct: 1 MQTDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLN 60 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 I LD+DPFA + + ++K + + + F+ D+VP + V V+ DLGV+S Q+D Sbjct: 61 IIGLDQDPFARKSALKKLDEFKSRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQLDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSFQK GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I Sbjct: 118 PKRGFSFQKDGPLDMRMNPLLDVDAEKLIEVLNEKDLANLIYKYGDERLSRKIARKIKLD 177 Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + T + S+ + +IHPATR+FQALRI VN EIE L + L+ + Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPE 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG++ V+SFHSLEDRLVK F + +++TKK + P++ Sbjct: 238 WLLPGGIISVISFHSLEDRLVKSCFK-----------------NDQRLKNLTKKPITPSE 280 Query: 298 EDVAFNRRSRSAKLRAGM 315 E+V N+R+RS KLR Sbjct: 281 EEVELNKRARSGKLRIAQ 298 >gi|51598567|ref|YP_072755.1| hypothetical protein BG0310 [Borrelia garinii PBi] gi|108868281|sp|Q661V8|RSMH_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51573138|gb|AAU07163.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 296 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 167/306 (54%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +K + + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLFAFKGRITYFNDWFDNFFVNYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S D+VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAADIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKRIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRICVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RALKKI 296 >gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500] Length = 919 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 28/317 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVL +VI L PG +D TFG GG++ + VIA DRDP + Sbjct: 606 HKPVLFREVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHL 665 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKS-- 130 + YK++ FS++ + + +DG++FD GVSS+Q+D +RGFSF+K Sbjct: 666 RQKYKDRLITIHGEFSRMSSLLAENGLSDLPIDGILFDFGVSSLQLDDPERGFSFRKDLY 725 Query: 131 GPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM+ S D+VN ++K L I+ GEE+ +IA IV RR P +T Sbjct: 726 GPLDMRMNKDDSSTLSAFDIVNTFSIKRLRDIMYFYGEERHTKKIAEEIVLRRSIEPIRT 785 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L ++I+K + + N+ +R F+ALR++VN+E +E+ +GL AEK L+ G L+ Sbjct: 786 TNELVAIIEKCIPYPAANK--SISRIFRALRMYVNSETQEVKKGLLEAEKVLQPNGELVA 843 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHS+EDR+VKKFF SR + + P V +++ +N RS+ Sbjct: 844 ISFHSIEDRIVKKFFQSRKNQ----SFVFPDGDD----------PVYAAPDELEWNPRSK 889 Query: 308 SAKLRAGMRTVERSIED 324 A LR+ RT + + + Sbjct: 890 PAILRSAQRTKSKPLAN 906 >gi|260655421|ref|ZP_05860909.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1] gi|260629869|gb|EEX48063.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1] Length = 303 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 22/308 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81 +L++V+ P +++DAT G GGYS +F V +D+D A + QE + + Sbjct: 1 MLQEVMDSFPRPPVGLVVDATLGLGGYSEAFLSRWPECRVAGIDQDGQARAIAQERLARW 60 Query: 82 KEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++F+++ F +L D +K GVV DLGVS++QI G+RGFSF++ GPLDMRM+ Sbjct: 61 ADRFAVWPGNFRRLNDLMASHGEKEAAGVVVDLGVSNLQITEGERGFSFREDGPLDMRMN 120 Query: 139 -CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G++AS +VNQ +L I GEE+ A IA AI +RR + +TT L +I++ Sbjct: 121 ASEGLTASQLVNQMTEDELAGIFFRYGEERFARSIARAIARRRGQSSIETTGQLVEVIRE 180 Query: 198 TVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ L L L GG+ + V++HSLED Sbjct: 181 GMPAAAQRKANGHPARRVFQALRIAVNDELGALEDLLSQVCGLLADGGVFVAVTYHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK+ G+ + + ++++ + P++++V N +SRSA+LRA Sbjct: 241 RLVKRAMREWEGQWLGIP--------------VSRRGLTPSEDEVLSNPKSRSARLRAFE 286 Query: 316 RTVERSIE 323 R IE Sbjct: 287 RRDNYQIE 294 >gi|219684724|ref|ZP_03539667.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr] gi|219672086|gb|EED29140.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr] Length = 296 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +KE+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RALKKI 296 >gi|12045077|ref|NP_072888.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|255660224|ref|ZP_05405633.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|1351515|sp|P47464|RSMH_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3844825|gb|AAC71443.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|166078718|gb|ABY79336.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma genitalium JCVI-1.0] Length = 309 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 10/311 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + + H VL+ +VI LN P LD T G G+S+ + + D D + Sbjct: 1 MLNNQQIHQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKES 60 Query: 71 VSCGQETMRDYKEQF--SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Q+ A F + DG++ DLGVSS Q++ +RGFSF+ Sbjct: 61 INFCQKLFFKNNNVVIIHDNFANFPVHLKQLSITKFDGILMDLGVSSHQLNQPNRGFSFK 120 Query: 129 KSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF- 185 GP+DMRM S +A V+ + L+ IL G+ K IA + K Q+ Sbjct: 121 NDGPIDMRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNL 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TTQ + + F K + + FQA+RI++N+EI L L LK Sbjct: 181 TTTQLAKVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRF 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+ FHS+E+++V+ F A + + I +Q ITKK ++P+Q+++ N R Sbjct: 241 LVIVFHSIEEKIVRNFIAKLTSFIQPEALPIKLT---PAYQLITKKPILPSQKELELNPR 297 Query: 306 SRSAKLRAGMR 316 SRSAKL + Sbjct: 298 SRSAKLFVIQK 308 >gi|225551942|ref|ZP_03772882.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1] gi|225370940|gb|EEH00370.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1] Length = 296 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 167/305 (54%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KHFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S SAS++VN + DL ++ L E + RI+ AI++ R+ +TT++L Sbjct: 127 DMRLCSSSCKISASEIVNTFSKYDLEALIYDLSNEHYSRRISKAIIEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFGGLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|111115132|ref|YP_709750.1| hypothetical protein BAPKO_0317 [Borrelia afzelii PKo] gi|216263935|ref|ZP_03435929.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1] gi|123145742|sp|Q0SNK4|RSMH_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110890406|gb|ABH01574.1| conserved hypothetical protein [Borrelia afzelii PKo] gi|215979979|gb|EEC20801.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1] Length = 296 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 168/306 (54%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDSQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +K++ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLIFKDRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKDSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIINKVYPFSK-VKINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYVKISKKPIIPSSDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RAVKKI 296 >gi|240047424|ref|YP_002960812.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma conjunctivae HRC/581] gi|263458177|sp|C5J697|RSMH_MYCCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239984996|emb|CAT04989.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma conjunctivae] Length = 296 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 144/301 (47%), Gaps = 16/301 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL++ +I LN + +D T G GG++ + + +I D+D A+ +E Sbjct: 1 MHIPVLIDSLIENLNIREDGIYVDLTLGRGGHAAAILSKLTTGLLIVFDKDEKAIEESKE 60 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F + VDG + DLGVSS QID G+RGFS+ K+ L Sbjct: 61 RLLAISKNVIFIWEDFRNFAVELEKRQIYKVDGFIMDLGVSSPQIDQGERGFSYTKNARL 120 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + A VVN N LT++L GE K A + AI+ R P TT +L Sbjct: 121 DMRMNQNQELDAHHVVNNYNQDLLTKVLQNYGELKNARSLTKAIIDSR---PINTTFELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI+ + + + + FQA+RI VN+E+ L L LK + +++FHS Sbjct: 178 NLIRSSSPAALLRKKNIVKNVFQAIRIEVNDELGALEAFLSLFISYLKQDSQVAIITFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S F K + P+ ++ N+RS+SAKLR Sbjct: 238 LEDRIVKMKFKSLLISSKTHLFDP----RAQQFSV---KTIKPSTSEIQLNKRSKSAKLR 290 Query: 313 A 313 Sbjct: 291 I 291 >gi|26553777|ref|NP_757711.1| methyltransferase [Mycoplasma penetrans HF-2] gi|30173058|sp|Q8EW81|RSMH_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|26453784|dbj|BAC44115.1| methyltransferase [Mycoplasma penetrans HF-2] Length = 312 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 12/314 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + H+ V LE + LN K+ +D TFG GG+S K + D D A Sbjct: 3 NINSNKHISVRLEDAVDSLNIQKDKIYVDCTFGRGGHSFEILKRLSSKGKLFVFDLDLDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +K F Q F L++ VDG +FD GVSS +D +RGFSF Sbjct: 63 KKYFDNNFSKFKNCF-FIQDNFKNLKENLAKFDISKVDGFLFDFGVSSPMLDNANRGFSF 121 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM+ + SA +V+N + + L +I GE + + I+K R + P + Sbjct: 122 KLDARLDMRMNQNQELSAYEVINNYSKEKLIQIFWKYGEIRNPVPVVDEIIKYRSNKPIE 181 Query: 187 TTQDLSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+K T + + H A FQA+RI VN+E+ + + L A L G + Sbjct: 182 TTLELVDIIRKRTPIKIQREKKHFARTYFQAIRIEVNDELNSIRKALSDALNMLSKNGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 + +SFHSLE++ +K + + + + +N+ F+ I K + ++ N R Sbjct: 242 VTISFHSLEEKEIKNTYKDVLESKI-PKEVPINNSFD--FKIIKIKPKRASSSELEENNR 298 Query: 306 SRSAKLRAGMRTVE 319 +RS+ L+ R E Sbjct: 299 TRSSFLKVIERVNE 312 >gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] Length = 405 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 162/340 (47%), Gaps = 37/340 (10%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71 +HVPVLL +VI + + + +D T GA G+S + K + + +D DP A Sbjct: 66 KENDNHVPVLLGEVIDVFSSLHLRSFVDCTLGAAGHSSAIIKGHPELENYVGMDVDPVAH 125 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGVDGVVFDLGVSSMQI 118 + + + D S + L ++ + GVD ++ DLG+SSMQ+ Sbjct: 126 AKARACIDDLMHSHSCHLKVHTFLSNFKHVKPLLAEVDPNFFNSGVDAILMDLGMSSMQV 185 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 + +RGFS +GPLDMRM + A D++N ++ R+L GEE + + IV Sbjct: 186 NNPERGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEVGRVLREYGEESNWHLLQNKIV 245 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + R TT DL LI+ + ++ I ATR FQALRI VN+E+ L + L + Sbjct: 246 QARLRGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRVFQALRIAVNDELGTLEKTLNA 305 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF-----------------ASRSGKVMAVRHMIP 277 + L GG L V+SFHSLEDR+VK+ F + I Sbjct: 306 CFECLAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDGDADEEERFGRDSRNSEEMWIK 365 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 S + +TK+ V P++E+ NRRSRSAKLR + Sbjct: 366 SVVQGRNGRILTKRPVTPSEEEERLNRRSRSAKLRVVEKV 405 >gi|37522496|ref|NP_925873.1| hypothetical protein glr2927 [Gloeobacter violaceus PCC 7421] gi|42559444|sp|Q7NCQ1|RSMH_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|35213497|dbj|BAC90868.1| glr2927 [Gloeobacter violaceus PCC 7421] Length = 314 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 27/288 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H VLLE+ I L PG + LDAT G GG+S + + S V+ALD+D A++ + + Sbjct: 30 HRSVLLEETIVGLQVHPGGLYLDATVGLGGHSEAILRTESTRVVALDQDEDALAQARLRL 89 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + E+ F++ + ++ DG+V DLGVSSMQ+D +RGFS++ PLDMRM Sbjct: 90 APFGERVRFEHINFAEFE--PGEERFDGIVADLGVSSMQLDSPERGFSWRFESPLDMRMD 147 Query: 139 CSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G +A+D+VN + + L+ + GEE+ + RIA IV+RR P +TT +L++++ Sbjct: 148 GGGEAETAADLVNTCSAEQLSDLFWRYGEERFSRRIARRIVERR---PLRTTTELAAVVA 204 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + IHPATR FQALRI VN E+ L L + L GG L V+SFHSLEDR Sbjct: 205 SAIPT--RQPIHPATRVFQALRIAVNGEVAALETFLERSPDWLVPGGRLAVISFHSLEDR 262 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VK + + + +T+K + + ++ N Sbjct: 263 PVKHRWRA-----------------DPRLEVLTRKTITAGEAEIQSNP 293 >gi|294660427|ref|NP_853182.2| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(low)] gi|298286859|sp|Q7NB79|RSMH_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|284812086|gb|AAP56750.2| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(low)] gi|284930664|gb|ADC30603.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(high)] Length = 313 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + LD T G GG+S + +I D+D A++ + Sbjct: 9 HYPVLLKEVIENLITTKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLKAIAHCNQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ SL F L+ + +DG + DLGVSS Q+D DRGFS+ G L Sbjct: 69 LFSEFNN-VSLINDNFVNLKKHLQLMQIDNIDGCLIDLGVSSYQLDQADRGFSYHSLGRL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + A+ ++ + V +L +I+ GE K R+ A+ K + T + + Sbjct: 128 DMRMDQNKAVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLEVVE 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + HPA R FQALRI VNNE+E L + L L GG + +++FHS Sbjct: 188 LIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFHS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LE+++VKK F + + ++ ++ +N + + K + PTQ ++ NRRSRSAKL Sbjct: 248 LEEKIVKKVFRHLA-SISSLNNLPINNELLKKYHNHFNKGLSPTQSELETNRRSRSAKLF 306 Query: 313 AGMRTVE 319 + Sbjct: 307 VLEKINN 313 >gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera] Length = 324 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 162/326 (49%), Gaps = 34/326 (10%) Query: 17 IGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDR 66 HVPV+L +V+ + +P + +D T GA G+S + + + + +D Sbjct: 6 TATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDV 65 Query: 67 DPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 DP A Q +R + F ++ ++ + + GVDG++ DLG+S Sbjct: 66 DPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMS 125 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ++ +RGFS +GPLDMRM ++A D++N ++ RIL GEE + Sbjct: 126 SMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQ 185 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQ 230 + IVK R +T +L LI+KT ++ I ATR FQALRI VN+E++ L Sbjct: 186 NKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLED 245 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L + + L GG L V+SFHSLEDR+VK+ F +TK Sbjct: 246 SLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSN--------GEDERWNGTILTK 297 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + P++E+ NRRSRSAKLR + Sbjct: 298 RPITPSEEEERLNRRSRSAKLRVIQK 323 >gi|219685637|ref|ZP_03540452.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04] gi|219672825|gb|EED29849.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04] Length = 296 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +KE+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYARISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RALKKI 296 >gi|203287765|ref|YP_002222780.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1] gi|263445859|sp|B5RRC5|RSMH_BORRA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|201084985|gb|ACH94559.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1] Length = 297 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H+PVLLE VI L+ G V +D T G GG+S++ NVI ++RD ++ Sbjct: 6 HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++ ++ S F Y + + ++ DLG+S RGFSF + L Sbjct: 66 KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVAGRGFSFLEDEKL 125 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S GISA D+VN + + L ++ LG E + RI AI++ R+ QT+++L Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K K +I+PAT++FQALRI+VN+E++ L + L L G+L +++FH Sbjct: 186 QRIICKAYPNVK-FKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF + +TKK + + ++ +N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLTKDKYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAVKKLYE 297 >gi|313617974|gb|EFR90135.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL S4-378] Length = 274 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 89/269 (33%), Positives = 152/269 (56%), Gaps = 6/269 (2%) Query: 55 CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDL 111 ++ A D+D A+ + + +Y ++ + ++ F +++ + ++G+ DG+++DL Sbjct: 4 LNEQGHLFAFDQDQTAIDNAKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDL 63 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS Q+D +RGFS+ + LDMRM +A VVN+ + +DL RI GEEK + Sbjct: 64 GVSSPQLDERERGFSYHQDAALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSK 123 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELA 229 +IA I +RR+ P +TT +L +I+ + + HP R+FQA+RI VN+E+ + Sbjct: 124 QIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVE 183 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSI 288 L +A LK GG + V++FHSLEDR+ K F + + + + F+ Sbjct: 184 DSLENALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLA 243 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 T+K +VP++E++ N R+RSAKLR + Sbjct: 244 TRKPIVPSEEELEQNNRARSAKLRVIEKI 272 >gi|117928210|ref|YP_872761.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B] gi|263433362|sp|A0LTL5|RSMH_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117648673|gb|ABK52775.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B] Length = 329 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 176/309 (56%), Gaps = 13/309 (4%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60 M++ ++ H PV++++V+ LL PA PG +++DAT G GG++ + + S Sbjct: 1 MTADPGSSVPPAVVHRPVMVDRVVELLLPALGYPGAIVVDATVGLGGHAEAVVRAASAAT 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQ 117 +I LD DP A+ + + Y ++ L F +L + ++G+ ++FDLG+SS+ Sbjct: 61 LIGLDHDPHAIRLAAQRLAGYADRVQLVNVAFDRLAQVLSERGISAVAAILFDLGLSSLH 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGF++ + PLDMRM +A+DVVN + +L R+L + GEE+ A RIA AI Sbjct: 121 IDDPARGFAYSRDVPLDMRMDPRLPRTAADVVNTYSATELARVLRVYGEERFAVRIADAI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+RR P +T+DLS L+++ + ++ HPA R+FQALRI VN+E+ L + L A Sbjct: 181 VRRRARQPITSTRDLSELVREAIPAPARRTGGHPAKRTFQALRIEVNDELGRLERTLPVA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 AL+ GG ++V+S+HSLEDR VK+FF + + + +T+ P Sbjct: 241 IAALQPGGRIVVLSYHSLEDRTVKRFFQAAASDATPAGLPTALPTARPRLRLLTRGAERP 300 Query: 296 TQEDVAFNR 304 + +VA N Sbjct: 301 SPAEVAANP 309 >gi|317402444|gb|EFV83013.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Achromobacter xylosoxidans C54] Length = 365 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 171/336 (50%), Gaps = 35/336 (10%) Query: 16 TIGDHVPVLLEKVIALL-----------NPAPG-----------KVILDATFGAGGYSRS 53 +H PVLLE + L PG V +D TFG GG+SR Sbjct: 1 MEFEHRPVLLEPTVDALLLADFGGKGAARSQPGDEPAAATRAERGVFVDGTFGRGGHSRE 60 Query: 54 FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGV 107 ++ D+DP + + ++ F+ + + + VDGV Sbjct: 61 LLGRLGPTARLVVFDKDPE-AIAVANALAAADSRVTVVHGGFATMAEELRQLGIDKVDGV 119 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS QID +RGFSF + GPLDMRM G + +D + QA+V ++ ++ GEE Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A ++A AI RR + P +TT +L+ + V + HPATR+FQALRI++N E+E Sbjct: 180 RFAFQVAKAIAARRATRPLRTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284 ELA+ L SA L GG L V+SFHSLEDR+VK+ A+ + A + S V Sbjct: 239 ELARTLASALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPV 298 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +S+ + V+ E+VA N R+RSA LR RT Sbjct: 299 LRSLGR--VLAEDEEVAANARARSAVLRVAERTATP 332 >gi|329944591|ref|ZP_08292731.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170 str. F0386] gi|328530144|gb|EGF57027.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170 str. F0386] Length = 368 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 167/331 (50%), Gaps = 24/331 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSRSFCK 56 + G H PVLL++ + LL PA G V++D T G GG++ + + Sbjct: 5 QAQATDAAGRHEPVLLQRCLDLLAPAIERAAEDTSRGSAAGPVMIDCTLGMGGHTEAALE 64 Query: 57 MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVV 108 V+ +DRDP A++ + + ++F QAT+ + D VD V+ Sbjct: 65 RFPYLTVVGIDRDPEAITLASARLERFGDRFVAVQATYDAVDRVARDHSVSAEGTVDAVL 124 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 DLGVSS+Q+D RGFS+ + PLDMRM S G +A D++ A+ +LTRIL GEE+ Sbjct: 125 MDLGVSSLQLDEASRGFSYARPAPLDMRMDQSSGPTAQDLLESADSAELTRILRTYGEER 184 Query: 168 QASRIAHAIVKRRQSAPF--QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 ASRIA AIV+RR++ T + Q ++ + HPA R+FQALRI VN E+ Sbjct: 185 FASRIATAIVRRREAGEPASSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAEL 244 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 + L + + A +L+ GG L+V S+ SLEDR+VK+ + + A Sbjct: 245 DVLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALNHGATSRAPQGLPVVPEADRPYL 304 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + IT ++ N RS +LRA R Sbjct: 305 ELITSGAEKADARELEHNPRSAPVRLRAVAR 335 >gi|203284227|ref|YP_002221967.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly] gi|263445883|sp|B5RLD2|RSMH_BORDL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|201083670|gb|ACH93261.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly] Length = 297 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 165/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H+PVLLE VI L+ G V +D T G GG+S++ NVI ++RD ++ Sbjct: 6 HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++ ++ S F Y + + ++ DLG+S G RGFSF + L Sbjct: 66 KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVGGRGFSFLEDEKL 125 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S GISA D+VN + + L ++ LG E + RI AI++ R+ QT+++L Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K K +I+PAT++FQALRI+VN+E++ L + L L G+L +++FH Sbjct: 186 QRIICKAYPNVK-FKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF + +TKK + + ++ +N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLTKDQYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAVKKLYE 297 >gi|227497582|ref|ZP_03927805.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832951|gb|EEH65334.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 363 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 20/328 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H PVLL + + LL PA V++D T G GG++ + + I +DRD A++ Sbjct: 24 HTPVLLRRCLDLLAPAIEEAPAEPVMIDCTLGMGGHTEGALRRFPRLRVIGIDRDSQAIA 83 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + ++F+ +AT+ +++ + VD V+ DLGVSS+Q+D +RGFS Sbjct: 84 LASARLAPFGDRFTAVRATYDEVEAVAHRFSQDGEGTVDAVLMDLGVSSLQLDDVERGFS 143 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM G++A ++++ A +L RIL GEE+ A RI AIV+RR + Sbjct: 144 YARPAPLDMRMDQSQGMTAQELLDGAEPGELVRILRAYGEERFAPRIVEAIVRRRSAGHP 203 Query: 186 --QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T + + Q ++ HPA R+FQALRI VN E++ L + + A +L+ GG Sbjct: 204 VSSTQELAELVRQAVPAATRRTGGHPAKRTFQALRIAVNAELDVLERAVPRALNSLRVGG 263 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S+ SLEDR+VK+ A+ + + A Q++T + ++A N Sbjct: 264 RLVVESYQSLEDRIVKQAIAAGTRASVPDDLPFVPEGAGAYLQALTHGAERADEAELAAN 323 Query: 304 RRSRSAKLRAGMRTV----ERSIEDDSF 327 RS +LRA +R + E Sbjct: 324 PRSAPVRLRAAVRLRPADQAPAAEPKPL 351 >gi|168023286|ref|XP_001764169.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684609|gb|EDQ71010.1| predicted protein [Physcomitrella patens subsp. patens] Length = 329 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 111/329 (33%), Positives = 162/329 (49%), Gaps = 30/329 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74 HV VLL +V+A +D T GA G++ + + + I D DP A S Sbjct: 1 APHVAVLLNEVLAKFRDRRILSFVDCTLGAAGHASAILREHPELESFIGFDVDPVAHSEA 60 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRG 124 + ++ Q L F ++ V +GV+G++ DLG+SSMQ+D +RG Sbjct: 61 KPRLQAMASSDVQLHLVLTNFRNIKKAVNGADAKLVHEGVNGILMDLGMSSMQVDMAERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQS 182 FSF K GP DMRM S ++A +++N+ ++ RIL GEEK+ +A I KR Sbjct: 121 FSFMKDGPADMRMDPSASLTAEEILNKWPEAEVARILRDYGEEKRWKHLARKIVDKRLAG 180 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T++ + + T + +HPATR+FQALRI VN+E+ L L A L Sbjct: 181 GIHSTSELVKVIGGNTFGRPGKGKAVHPATRTFQALRIAVNDELRTLETALADAFDLLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQS------------- 287 G L V+SFHSLEDR+VK+FF +G AV + S F Sbjct: 241 KGRLAVISFHSLEDRIVKRFFLKAAGIGQAVEDNEMGSEPQGDDFSLRDKNVLEGSIGVV 300 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +TK+ +V +++ N RSRSAKLR + Sbjct: 301 LTKRPIVAEADEINTNPRSRSAKLRVIEK 329 >gi|254819736|ref|ZP_05224737.1| S-adenosyl-methyltransferase MraW [Mycobacterium intracellulare ATCC 13950] Length = 321 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 176/313 (56%), Gaps = 18/313 (5%) Query: 22 PVLLEKVIALLNPA-----PGKV---ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 PVLLE+ +ALL PA P ++DAT GAGG++ F +I LDRDP A+ Sbjct: 2 PVLLERCVALLTPALTRHHPDGTGATLVDATVGAGGHAERFLTELPGLRLIGLDRDPTAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + + ++ +L + + + Y + VDG++FDLGVSSMQ+D +RGF Sbjct: 62 DITRTRLARFSDRVTLVRTRYDGVATALAESGYAATESVDGMLFDLGVSSMQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM ++A+D++N + +L IL GEE+ A RIA IV+RR P Sbjct: 122 AYAQDAPLDMRMDPDAPLTAADILNTYDETELANILHRYGEERFARRIAAHIVRRRARQP 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F +T DL +L+ + + + + HPA R+FQALR+ VN+E++ L L +A AL GG Sbjct: 182 FASTADLVALLYEAIPAAARRTGGHPAKRTFQALRVAVNDELDSLRAALPAALDALAVGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK+ FA V + H F+++T+ ++ N Sbjct: 242 RIVVMTYQSLEDRIVKRLFAEAVASRTPVDLPVELPGHQPRFRALTQGAGRADATEIERN 301 Query: 304 RRSRSAKLRAGMR 316 RS + +LRA R Sbjct: 302 PRSAAVRLRALQR 314 >gi|308374510|ref|ZP_07667801.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis SUMu006] gi|308341663|gb|EFP30514.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis SUMu006] gi|323719262|gb|EGB28406.1| hypothetical protein TMMG_01445 [Mycobacterium tuberculosis CDC1551A] Length = 328 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 168/316 (53%), Gaps = 18/316 (5%) Query: 24 LLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 + ++ LL PA P V+LDAT GAGG++ F + +I LDRDP A+ Sbjct: 1 MAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTALDV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSF 127 + + + ++ +L + L + + G DG++FDLGVSSMQ+D +RGF++ Sbjct: 61 ARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGFAY 120 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM + +A+D+VN + L IL GEE+ A RIA IV+RR PF Sbjct: 121 ATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFT 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T +L +L+ + + + HPA R+FQALRI VN+E+E L + +A AL GG + Sbjct: 181 STAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGRI 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+++ SLEDR+VK+ FA + H F+S+T + ++ N R Sbjct: 241 AVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERNPR 300 Query: 306 SRSAKLRAGMRTVERS 321 S +LRA R R+ Sbjct: 301 STPVRLRALQRVEHRA 316 >gi|290969165|ref|ZP_06560690.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1 str. 28L] gi|290780671|gb|EFD93274.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1 str. 28L] Length = 310 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 161/314 (51%), Gaps = 26/314 (8%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 HV VL E+ +A L P + +D T G GG++ + A+ G + Sbjct: 5 HVSVLREETVAAVLGPK-NGIYVDCTLGGGGHAATLAAQL--------QEEALVIGLDRD 55 Query: 79 RDY-----------KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRG 124 RD + L Q F L D + + + ++FDLGVS Q+D +RG Sbjct: 56 RDALRAAAARLQGVPCRTRLVQRNFQYLADVLQELHLPYVDGIMFDLGVSGYQLDTPERG 115 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ + GPLDMRM + AS VVN + + L ++ GEE+ A RIA IV+ R+ Sbjct: 116 FSYMQDGPLDMRMDQRCAVPASTVVNTYSEEALYSLIKAYGEERWAKRIAAFIVRARRQK 175 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF T +L +I++ + + + HPA R+FQALRI VNNE+ L L +A + LK G Sbjct: 176 PFSRTAELVYVIKQAIPAGARRDGPHPAKRTFQALRIEVNNELGILHDALTTAVQHLKPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++FHSLEDR+ K+ F + + + H + ++VV P+ ++VA Sbjct: 236 GKIGVITFHSLEDRITKQTFKELATDCICPPDLPVCTCHHRASIRVRRQVVTPSPQEVAD 295 Query: 303 NRRSRSAKLRAGMR 316 N R+RSAKLR R Sbjct: 296 NPRARSAKLRVAER 309 >gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC 27560] gi|149736554|gb|EDM52440.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC 27560] Length = 365 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + +++++ L+ PG++ LDAT G GG++ K ++ LD DP Sbjct: 62 STPAGMHISICVKEILEFLDIKPGQIGLDATLGYGGHTLQMLKKLDRKGHIYGLDIDPIE 121 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + + + D + + F + + D ++ DLGVSSMQID +RGF+ Sbjct: 122 IKKTTKRLADKGFGKDVLTTINTNFRNIDQVAKEHGPFDFILADLGVSSMQIDNPERGFT 181 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAP 184 ++ GPLD+R++ GISA++ + +V +L + +E A IA AIV R + + Sbjct: 182 YKYEGPLDLRLNPEKGISAAERLRDISVDELEGMFIENSDEPYAYEIAKAIVARNRTNNK 241 Query: 185 FQTTQDLSSLIQK--TVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT DL ++I+K V K + R FQALRI VNNE E L L AL Sbjct: 242 IETTTDLKNVIEKSLCVVPQKERKEAVKKSCARVFQALRIDVNNEFEVLYDFLEKLPDAL 301 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 +GG + V++FHS EDRLVKK F + + + + K V+ P+ E+ Sbjct: 302 ASGGRVAVLTFHSGEDRLVKKSFKALQKQGVYSE--------------VAKDVIRPSAEE 347 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 348 CNTNPRARSTKMRWAIK 364 >gi|318057546|ref|ZP_07976269.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actG] gi|318081147|ref|ZP_07988479.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actF] Length = 343 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 110/295 (37%), Positives = 168/295 (56%), Gaps = 10/295 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 G HVPV+L + + LL PA PG V++D T G GG+S + ++ALDRD A Sbjct: 27 AEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEA 86 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ L A + +L D + V G++FDLGVSSMQ+D DRGF++ Sbjct: 87 LRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAY 146 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 147 AQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFA 206 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + Sbjct: 207 RSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRI 266 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 V+++HSLEDRLVK+ ++ + + + + +T+ +P +E+V Sbjct: 267 AVLAYHSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 321 >gi|224531783|ref|ZP_03672415.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116] gi|224511248|gb|EEF81654.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116] Length = 296 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + ++I ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDSIYIDSTLGEGTHAKAILEKYDFLSLIGIERDFQILQRA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++++ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLIFEDRITYFNDWFDNFFANYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLEELIYDLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIINKVYPFSK-AKINPATKTFQALRIYVNDELTRLKRSLPLWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSFD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 RA + Sbjct: 291 RAVKK 295 >gi|45657732|ref|YP_001818.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|88911699|sp|P62472|RSMH_LEPIC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|45600972|gb|AAS70455.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 334 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 109/327 (33%), Positives = 167/327 (51%), Gaps = 34/327 (10%) Query: 20 HVPVLLEKVIALLN---PAPGKV-ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H V ++++ + V LD T G GG+S F K S +I DRDP +S Sbjct: 21 HYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLKEFPNSRIILCDRDPIMLSR 80 Query: 74 GQETMRDYKEQFSLFQATFSQLQD-----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D+ E+ Q FS++ Y D+ G++ DLG+S+ + RGFSF+ Sbjct: 81 ALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILLDLGISTFHLFHSGRGFSFR 140 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +S PLDMR++ + G SA +++N L I GEE+ + +IA IV+ R+ T Sbjct: 141 ESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERWSKKIAEVIVETRKQNSIST 200 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L++L+ K + HPATR FQALRI VN E+ + GL+ L+ GG++ Sbjct: 201 TFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAHIENGLKLLLDLLRLGGVIQ 260 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK F + F+ +TKK ++P+QE++ N S Sbjct: 261 VISFHSLEDRIVKNSFRDYA--------------KQNGFELLTKKPILPSQEEIDENPAS 306 Query: 307 RSAKLRAGMRTV-------ERSIEDDS 326 RSAKLR +T ++ E++ Sbjct: 307 RSAKLRILRKTKSVDKKYRNKNFEEEE 333 >gi|227548905|ref|ZP_03978954.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum DSM 44291] gi|227079033|gb|EEI16996.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum DSM 44291] Length = 345 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 112/334 (33%), Positives = 174/334 (52%), Gaps = 23/334 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNV 61 M + G HVPV+ +++ LL PA G VI+DAT GAGG++ F + G++V Sbjct: 13 MDFRVDPNHG-HVPVMRDRMADLLAPAVEVFGAGAVIVDATLGAGGHTEHFLRRFPGASV 71 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFD 110 I +DRDP A+ E + + ++F QA F + + D GV G +FD Sbjct: 72 IGVDRDPAALRDATERLAPFADRFVGVQARFDDIGTAIRDRDGAIFDAARTHGVAGALFD 131 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQA 169 LGVSSMQ+D +RGF+++ PLDMRM + +A+DV+N + +L RIL G+E+ A Sbjct: 132 LGVSSMQLDQEERGFAYKVDAPLDMRMDPTTTLTAADVLNTYSHGELARILKTYGDERFA 191 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEEL 228 +IA I+K R+ APF+ + L L+ + + ++ HPA R+FQALRI VN E++ L Sbjct: 192 GKIASHILKEREKAPFERSARLVELLYQAIPAATRRTGGHPAKRTFQALRIEVNGELDAL 251 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L GG + +S+ SLED++VK S + + A F+ I Sbjct: 252 RAVIPVITDLLGPGGRAVFMSYQSLEDKIVKNALTSLTTSTTPTGLPMDLPGTAATFRWI 311 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGM--RTVER 320 T ++ ++ N R+ ++R RT Sbjct: 312 THGAEKASEAEIDQNSRAAPVRVRGVEKLRTDNP 345 >gi|254527132|ref|ZP_05139184.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9202] gi|221538556|gb|EEE41009.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9202] Length = 300 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 171/318 (53%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61 M + + + +H V+ +++IA L ++ +DAT G GG+S + + S + Sbjct: 1 MQTDLSDSSFFNHKSVMTDEIIASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELN 60 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 I LD+DPFA + + +K + + + F+ D+VP + V V+ DLGV+S QID Sbjct: 61 IIGLDQDPFARISASKKLDKFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSFQK GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I Sbjct: 118 PKRGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLD 177 Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + T + S+ + +IHPATR+FQALRI VN EIE L + L++ + Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPE 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG++ ++SFHSLEDRLVK F + +++TKK + P++ Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSSFK-----------------NDQRLKNLTKKPITPSE 280 Query: 298 EDVAFNRRSRSAKLRAGM 315 ++V FN+R+RS KLR Sbjct: 281 QEVEFNKRARSGKLRIAQ 298 >gi|291519055|emb|CBK74276.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4] Length = 289 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 139/284 (48%), Gaps = 12/284 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 +H VLL + + LN P + +D T G GG+S ++ D+D A+ Sbjct: 1 MEFNHYSVLLYETVDNLNIKPDGIYVDGTLGGGGHSFEIASRLTTGHLYGFDQDTDALKA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + Y ++ + + + +++ + + VDG++ DLGVSS Q+D DRGF+++ Sbjct: 61 AGERLACYGDKVTRIHSNYEFMKERLAELGVTKVDGIMLDLGVSSFQLDEADRGFTYRVD 120 Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + ++A+D+VN + +DLTR+L GEEK + +I I+K R+ AP T Sbjct: 121 DAPLDMRMDKDNPMTAADIVNTYSAEDLTRVLFTYGEEKFSKQIVKNIIKEREKAPILTA 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I +++ + HP+ R++QALRI +N E+ L + L GG L + Sbjct: 181 GQLNKIIAESIPKKAQVGQGHPSKRTYQALRIELNRELTVLEDHIDDMIDLLNPGGRLCI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 ++FHSLEDR+ K F ++ + I K Sbjct: 241 ITFHSLEDRITKVAFKRNEDPCTCPKNFPVCVC----GKKIKGK 280 >gi|160902330|ref|YP_001567911.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95] gi|262824808|sp|A9BHH9|RSMH_PETMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160359974|gb|ABX31588.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95] Length = 286 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 26/300 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRD 80 ++E+V++ + + +D T G GG+ ++ + VI +D D + +E ++D Sbjct: 1 MVEEVLSYMITNKDGIYVDCTAGEGGHIKAILGYTNNKAKVIGVDVDYEVLEIAEERLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L ++++ + + VDG + DLGVS+ Q+ +RGFSF K PLDMRM Sbjct: 61 LSDNVVLIKSSYKNIDMVLRGLGIDKVDGFLMDLGVSTFQLKGENRGFSFTKDEPLDMRM 120 Query: 138 SCSGIS-ASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQDLSSLI 195 A+ +VN + +DL RI+ GEEK+ I+ +IVK R Q D Sbjct: 121 DVQSEKDAAYIVNNYSQEDLRRIIFEYGEEKRFAHSISKSIVKNRPINTTQELVDAIRKG 180 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +R H AT++FQALRI VN E++ + + L E LK + V++FHSLED Sbjct: 181 LPASQVHERHR-HFATKTFQALRIEVNEELKNIEETLSKFESFLKVKARVAVITFHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FF + + +T K ++PTQE++ N RSRSAKLR Sbjct: 240 RIVKNFFKNNE-----------------RYNFLTPKPILPTQEEIKHNPRSRSAKLRVVE 282 >gi|145350048|ref|XP_001419435.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579666|gb|ABO97728.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 314 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 25/314 (7%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82 ++V+ + +D T GAGG++R+ + + + D D A + + + + Sbjct: 2 DEVLEAFRDVRARTHVDGTLGAGGHARAMIEAHEEMEHFVGFDVDASAHALARPRLERAR 61 Query: 83 E-----------QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + SL +A F ++++ + GVD VV DLGVSSM +D +RGFSF Sbjct: 62 AATRGDEATTTLRLSLVEANFRRMREALRALDVDGVDSVVLDLGVSSMHLDRAERGFSFM 121 Query: 129 KSGPLDMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM S + ++ +VN +++ RIL GEEK +A I +RR +T Sbjct: 122 NDGPLDMRMGESATTTAEEIVNAWPEEEIGRILREYGEEKHWRLLARRICERRAEKEIRT 181 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L I K IHPATR+FQ +RI VN+E+ + + +A +AL+ GG L + Sbjct: 182 TRELVDAIGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEALRPGGRLAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +SFHSLED +VK+ F +G+ R+M A P + + IT+K VPT ++ Sbjct: 240 ISFHSLEDSIVKRRFRHFAGRAEPPSEEVNRYMPQPEAPPKIVKLITRKPKVPTSAEIDV 299 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 300 NVRSRSAKLRVCEK 313 >gi|296129435|ref|YP_003636685.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM 20109] gi|296021250|gb|ADG74486.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM 20109] Length = 333 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 10/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKM--GSNVIA 63 M HVPVLLE+ + LL PA V++D T G GG++ + V+ Sbjct: 1 MDEQTADAASRHVPVLLERCVELLAPALAAPGAVLVDCTLGMGGHTEGVLRAIEHVRVVG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +DRDP A++ E + + E+F+ A + ++ D V GV GV+ DLGVSS+Q+D Sbjct: 61 IDRDPQALALASERLAPFGERFTGVHAVYDEIGDVVERLGLPGVQGVLMDLGVSSLQLDE 120 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGF++ PLDMRM + G +A+DV+N + +D+ R+L + GEE+ A+RIA +V+ Sbjct: 121 AERGFAYAHDAPLDMRMDPTTGPTAADVLNTYDERDIARVLRVYGEERFAARIARGVVRF 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P T +L +++ V ++ HPA R+FQALRI VN E+ L + L +A Sbjct: 181 RERTPLTRTSELVDIVRAGVPAATRRTGGHPAKRTFQALRIEVNGELAALERALPAAIDV 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V S+ SLEDRLVK+ A+ + + H + +T+ + Sbjct: 241 LAVGGRIVVESYQSLEDRLVKRALAAGATSSAPPDLPVEPVTHAPYLRLLTRGAEEADEA 300 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N R++S +LRA R Sbjct: 301 ELARNPRAQSVRLRAAER 318 >gi|321460668|gb|EFX71708.1| hypothetical protein DAPPUDRAFT_111399 [Daphnia pulex] Length = 322 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 115/321 (35%), Positives = 163/321 (50%), Gaps = 27/321 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDY 81 + ++V+ + P + LD TFGAGG++R V LDRDP A + + Sbjct: 1 MHKEVLEMFQPQQNQKFLDLTFGAGGHTRKLLSSARNITVYTLDRDPLAYELAIQLASET 60 Query: 82 KE-QFSLFQATFSQLQDYVPDKGVDGVV----FDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS L + + D G SSMQ D +RGFS K+GPLDMR Sbjct: 61 TNGQVVPLLGKFSDLPQLLSNPETCNFFDGILVDCGCSSMQFDTRERGFSLSKNGPLDMR 120 Query: 137 MSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191 M + SA D++ + L+R+L + GEEKQA +IA AI++ R QTT +L Sbjct: 121 MDQNRLENQPSAKDILANIDEDSLSRVLKVYGEEKQAKKIARAIIEARYLFKSLQTTHEL 180 Query: 192 SSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T S H AT++FQALRI VN+E+ EL +R A + LK GG L+ Sbjct: 181 AQLIESTCGLSTRTDKLQRPSHVATKTFQALRILVNDELNELEFAVRYAHRTLKIGGKLV 240 Query: 247 VVSFHSLEDRLVKKFFAS----------RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 ++FHSLEDR+VK+ + ++P ++SI K V+VP+ Sbjct: 241 TITFHSLEDRIVKEHLHGFDYSAKSEEIYKNYGRQLDPLLPLADMERKWESINKHVLVPS 300 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 E+V N RSRSAKLRA ++ Sbjct: 301 DEEVNGNPRSRSAKLRAAIKI 321 >gi|255076257|ref|XP_002501803.1| MraW methylase/RNA recognition motif protein [Micromonas sp. RCC299] gi|226517067|gb|ACO63061.1| MraW methylase/RNA recognition motif protein [Micromonas sp. RCC299] Length = 744 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 143/326 (43%), Gaps = 19/326 (5%) Query: 12 AIHHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 A G H P +L + IA L P P +D TFG GG++R + A D D Sbjct: 354 ATEQAFGTHTPAMLRETIAALVKPDPNGTYVDGTFGRGGHTRGILAALGPNGRLHAFDMD 413 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGF 125 P A+ ++ + +F++ A F + + GV DLG+SS Q D RGF Sbjct: 414 PEAIKEAKK-LEAEDSRFTIHHAPFGCMDTVLKPLGVTCSGVFLDLGISSPQFDDESRGF 472 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQ 181 ++ GPLD+R G+ AS+ + + + +L RIL GE RIA A+ Sbjct: 473 RPEQDGPLDLRFDVTQGVPASEFLERVDRDELVRILHEYGETADPVAARRIADAVCLAVA 532 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +T + + + +HPA +FQALRI +N E +E+ +G+R+A + + Sbjct: 533 EERLPSTTKAFAALVAAAKGKEYQAMHPAKLTFQALRIHLNQEFDEMRRGMRAAAEVMID 592 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS--------GKVMAVRHMIPSNAHPAVFQSITKKVV 293 GG L V+++ E ++ F K M H NA P V+ Sbjct: 593 GGRLGVLTWKHSECAILVDFHRHFEVVQPTQPLLKWMRSNHPEKENALPTVWGLTMDDAQ 652 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVE 319 P++ ++ N RSRSA L + Sbjct: 653 RPSEREMRDNSRSRSAILHVLRKVDA 678 >gi|189219430|ref|YP_001940071.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum V4] gi|263456445|sp|B3DVX0|RSMH_METI4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189186288|gb|ACD83473.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum V4] Length = 316 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 93/309 (30%), Positives = 153/309 (49%), Gaps = 10/309 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 + H+PV+L++ + +P + +D TFG GG++ + G V+ALD D A Sbjct: 5 TEEVESHIPVMLKEFLKHCSPKRDEQWIDGTFGYGGHTTALLDKGCKVLALDTDEDAQKR 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +++ E+F F+ FS++ + VDG++ DLGVS Q+ RGFSFQ Sbjct: 65 A-EILKEKGEEFYFFRKNFSEMAEACFQMGWTAVDGILLDLGVSLGQLKDPKRGFSFQFP 123 Query: 131 GPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + + ++N + + L ++ + K++ ++A+ IV+ R + P + Sbjct: 124 DAPLDMRMDRTRERTGAALLNTLSKEQLVQLFSVACNMKESQKLANEIVRFRSTGPIKKV 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D ++ + ++I+ ATR F ALRI VN E+E L + LR K LK GG + V+ Sbjct: 184 GDFLEIVTRA--RLLKSKINAATRPFLALRIAVNEELEHLEKALREGTKLLKGGGRIAVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHS EDR+VK+F S N F + + V+ + E+ N RSRS Sbjct: 242 SFHSAEDRIVKEFMRSHCLPKKGEGVAEEENHREMFFYKVER--VLVSLEERKNNPRSRS 299 Query: 309 AKLRAGMRT 317 A+LR + Sbjct: 300 ARLRIAWKI 308 >gi|87300864|ref|ZP_01083706.1| methyltransferase [Synechococcus sp. WH 5701] gi|87284735|gb|EAQ76687.1| methyltransferase [Synechococcus sp. WH 5701] Length = 299 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 26/313 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 DH+PVL V+A PG +LD T G GG+S +I LD+DP A+ Sbjct: 2 PKTFDHLPVLAAAVVAGFTDLPGEGTLLDVTVGGGGHSALLLAAHPGLRLIGLDQDPAAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + ++ +L + F+ Y P + + GV+ DLGVSS Q+D +RGFSF+ G Sbjct: 62 AAAAERLEPFADRVTLVPSNFAN---YAPSEPLVGVLADLGVSSPQLDRPERGFSFRLDG 118 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TT 188 PLDMRM+ G +A++++++ KDL ++ GEE+ + RIA IV+ R T Sbjct: 119 PLDMRMNSAEGETAAELMDRVEEKDLADLIYAYGEERLSRRIARRIVEARPWHGSSRGTA 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +++ RIH ATR+FQALRI VN+E+ L + L +A L GGL V+ Sbjct: 179 ALAYLVAGCYPPKARHGRIHAATRTFQALRIAVNDELGALERLLHNAPDWLMPGGLFGVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + +T+K VV +++ N RSRS Sbjct: 239 SFHSLEDRRVKAAF-----------------LADDRLERLTRKPVVADEQEAERNPRSRS 281 Query: 309 AKLRAGMRTVERS 321 AK R R Sbjct: 282 AKFRLARRRSANF 294 >gi|124024411|ref|YP_001018718.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9303] gi|262824953|sp|A2CD93|RSMH_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123964697|gb|ABM79453.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 310 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 163/318 (51%), Gaps = 31/318 (9%) Query: 10 SSAIHHTIG-DHVPVLLEKV---IALL--NPAPGKVILDATFGAGGYSRSFCKMGS--NV 61 S+I+ G H+ V+ + V +A L G +++DAT G GG+S + + Sbjct: 3 DSSINSDSGFKHLSVMADAVSQPVAALPAELLDGGLMIDATLGGGGHSALLLERHPDLRL 62 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 I LD+DP A + E + + ++ + F D+ P + V+ DLGVSS Q+D Sbjct: 63 IGLDQDPTARAAAAERLALFGDRVKIVATNFV---DFSPAEPAVVVMADLGVSSPQLDVA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-- 178 RGFSF+ GPLDMRM+ G +A++++ + +L ++ GEE+ + RIA I Sbjct: 120 KRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDL 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 Q T ++ ++ RIHPATR+FQALRI VN+E++ L + L+ A Sbjct: 180 AEQGPYAGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELDALDRFLQKAPDW 239 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GGLL V+SFHSLEDR VK F + +T+K +V ++ Sbjct: 240 LVPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEM 282 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N RSRSAK R R Sbjct: 283 EIAANPRSRSAKCRFARR 300 >gi|24214745|ref|NP_712226.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|42559478|sp|Q8F4J6|RSMH_LEPIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24195744|gb|AAN49244.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 334 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 109/327 (33%), Positives = 166/327 (50%), Gaps = 34/327 (10%) Query: 20 HVPVLLEKVIALLN---PAPGKV-ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H V ++++ + V LD T G GG+S F K S +I DRDP +S Sbjct: 21 HYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLKEFPNSRIILCDRDPIMLSR 80 Query: 74 GQETMRDYKEQFSLFQATFSQLQD-----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D+ E+ Q FS++ Y D+ G++ DLG+S+ + RGFSF+ Sbjct: 81 ALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILLDLGISTFHLFHSGRGFSFR 140 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +S PLDMR++ + G SA +++N L I GEE+ + +IA IV+ R+ T Sbjct: 141 ESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERWSKKIAEVIVETRKQNSIST 200 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L++L+ K + HPATR FQALRI VN E+ + GL+ L+ GG++ Sbjct: 201 TFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAHIENGLKLLLDLLRLGGVIQ 260 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK F + F+ +TKK + P+QE++ N S Sbjct: 261 VISFHSLEDRIVKNSFRDYA--------------KQNGFELLTKKPIFPSQEEIDENPAS 306 Query: 307 RSAKLRAGMRTV-------ERSIEDDS 326 RSAKLR +T ++ E++ Sbjct: 307 RSAKLRILRKTKSVDKKYRNKNFEEEE 333 >gi|302788300|ref|XP_002975919.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii] gi|300156195|gb|EFJ22824.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii] Length = 373 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 26/315 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H PVL+ + + K LD T GAGG++ + + + +D DP A+ + Sbjct: 65 PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124 Query: 76 ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + D + LF A F ++ + ++G DG++ DLG+SSMQ+D +RGF Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184 Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 S+ GPLDMRM S G++A + N + ++ RIL GEE + +A IV R + Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT+DL+S++ + R HPA R+FQALRI VN+E++ L + A L Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGHASSCLAP 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+SFHSLEDR+VK F S + + F +T + ++ Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKADLAFMLLTTSPITADAAEIE 355 Query: 302 FNRRSRSAKLRAGMR 316 N R RSAK+R R Sbjct: 356 KNSRCRSAKMRVIQR 370 >gi|297170224|gb|ADI21262.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [uncultured myxobacterium HF0010_08B07] Length = 285 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 152/284 (53%), Gaps = 12/284 (4%) Query: 37 GKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 + LD TFG GG+++ +I+ D D A+ + + F + FS Sbjct: 9 NGLYLDCTFGRGGHTKKILDKLSSEGQLISFDLDDDAMKVAKNI---DNKNFKFIKTNFS 65 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQAN 152 + DYV D + GV+ D GVSS Q+D +RGFSFQ GPLDMR + + D++ + Sbjct: 66 MIDDYVEDDSLSGVLIDCGVSSPQLDEPERGFSFQTKGPLDMRFNQEQKLTCKDIIENYS 125 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 K++ IL GEEK++ RIA IVK+R+ T L+ +I+ + + HPAT+ Sbjct: 126 EKEIATILWKFGEEKESRRIAKLIVKQREQNVIDNTLVLAEIIKT--AKTVKTKKHPATK 183 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 SFQALR+ VN+E E L L + L G L++++FHSLEDR+ K+ F + Sbjct: 184 SFQALRMAVNSEFENLTTCLDRIKDKLTKSGKLVIITFHSLEDRIAKQTFKPKINFHEKN 243 Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +I + F+ K++ P+QE+++ N R+RSAK+R + Sbjct: 244 LPLIYEDVSDK-FKI--SKIIYPSQEEISMNPRARSAKMRIIEK 284 >gi|291563183|emb|CBL41999.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SS3/4] Length = 360 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 152/325 (46%), Gaps = 28/325 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + + +++ L+ PG LDAT G GG++ K ++ LD DP Sbjct: 50 STPAGMHISICVNEILDFLDIRPGMQGLDATLGYGGHTTEMLKKLEGQGHMYGLDVDPIE 109 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + + +++ + ++ Q F+ + VP+ G D V+ DLGVSSMQID +RGF+ Sbjct: 110 IVKTKARLKERGFDEDILTVKQMNFADIDKLVPETGLFDFVLADLGVSSMQIDNPERGFT 169 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ GPLD+R++ GISA++ + Q +++++ + +E A IA I KR + + Sbjct: 170 YKADGPLDLRLNPEKGISAAERLKQMDMEEIAGMFVENSDEPYAEEIAREIAKRNRKRQY 229 Query: 186 QTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 T + +T + R FQALRI VN E E L L L Sbjct: 230 IETTTGLKEVIETTLSFIPEKERKEAVKKSCQRCFQALRIDVNQEFEVLESFLTKLPGIL 289 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG +++FHS EDRLVK +F + + V+ P+ E+ Sbjct: 290 APGGRAAILTFHSGEDRLVKYYFKEGKKDGLYSD--------------VANDVIRPSAEE 335 Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324 N R+RS K+R +R E S + Sbjct: 336 CQRNPRARSTKMRWAIREGENSHRN 360 >gi|116515077|ref|YP_802706.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285527|sp|Q057T6|RSMH_BUCCC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116256931|gb|ABJ90613.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 307 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 167/318 (52%), Gaps = 37/318 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL++ I LN + +D TFG GG+++ K + ++D+D +V+ G++ Sbjct: 3 HIPVLLKETINALNIKKNGIYIDGTFGNGGHTKEILKYLGQSGKLYSIDQDIKSVNKGKK 62 Query: 77 TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++FS+ FS + K +DG++ DLG+SS QI+ DRGFSF K+G Sbjct: 63 IK---DKRFSIIFGKFSKKIPYIYKKNKKKKIDGILLDLGISSNQINQNDRGFSFMKNGL 119 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GI A + +++ K++ ++L GEE+ + +I++AI R + T DL Sbjct: 120 LDMRMNNTTGIPAWKWLKKSSQKEIEKVLRKYGEERYSKKISYAIYNRNKKKTITQTLDL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HPATR+FQA+RI +NNEI+EL + L+ + K LK L+++ FH Sbjct: 180 VQIIKKAIPKIDKYK-HPATRTFQAIRIHINNEIKELKKTLKISIKILKKKRRLVIICFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------------KVVVPTQ 297 SLE+R+VK FF R + + ++ K Sbjct: 239 SLENRIVKNFFKKHGKTFFIPRGLPITEKKIKKIENKKIKIIKKIKPKKTEIQK------ 292 Query: 298 EDVAFNRRSRSAKLRAGM 315 N+RSRSA LR Sbjct: 293 -----NKRSRSAILRIAE 305 >gi|187479357|ref|YP_787382.1| S-adenosyl-methyltransferase MraW [Bordetella avium 197N] gi|123738495|sp|Q2KVE4|RSMH_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115423944|emb|CAJ50496.1| S-adenosyl-methyltransferase [Bordetella avium 197N] Length = 355 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 119/348 (34%), Positives = 174/348 (50%), Gaps = 31/348 (8%) Query: 16 TIGDHVPVLLEKVIALL-------------NPAPG---------KVILDATFGAGGYSRS 53 +H PVLLE + L P + +D TFG GG+SR Sbjct: 1 MKFEHRPVLLEPTVDALLQADFGGRGASRARPRDEAAALTRQATGIFVDGTFGRGGHSRE 60 Query: 54 FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGV 107 ++ D+DP + + + ++ F+ + + + +DGV Sbjct: 61 LLGRLGPQARLVVFDKDPE-AIAVAQALAAEDARVTVVHGGFATMTEELAARGIERIDGV 119 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS QID DRGFSF + GPLDMRM G + +D + QA+V+++ ++ GEE Sbjct: 120 MLDLGVSSPQIDDADRGFSFMREGPLDMRMDTSRGPTVADWLAQASVEEMREVIADYGEE 179 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A ++A AI RR + P TT +L+ + V + HPATR+FQALRI++N E+E Sbjct: 180 RFAFQVAKAIAARRATRPLHTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 ELA+ L SA + L GG L V+SFHSLEDR+VK+ A+ + A + + Sbjct: 239 ELARALASAIELLVPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHPRLPLRESELPQPI 298 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLP 334 T VV +VA N RSRSA LRA RT + + +P +P Sbjct: 299 LQTLGKVVADDAEVAGNARSRSAILRAAERTSQPLPATGAEDFVPAVP 346 >gi|302770288|ref|XP_002968563.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii] gi|300164207|gb|EFJ30817.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii] Length = 373 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 26/315 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H PVL+ + + K LD T GAGG++ + + + +D DP A+ + Sbjct: 65 PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124 Query: 76 ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + D + LF A F ++ + ++G DG++ DLG+SSMQ+D +RGF Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184 Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 S+ GPLDMRM S G++A + N + ++ RIL GEE + +A IV R + Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT+DL+S++ + R HPA R+FQALRI VN+E++ L + A L Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGQASSCLAP 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+SFHSLEDR+VK F S + + F +T + ++ Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKVDLAFMLLTTSPITADAAEIE 355 Query: 302 FNRRSRSAKLRAGMR 316 N R RSAK+R R Sbjct: 356 KNSRCRSAKMRVIQR 370 >gi|293603437|ref|ZP_06685862.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC 43553] gi|292818139|gb|EFF77195.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC 43553] Length = 365 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 115/352 (32%), Positives = 175/352 (49%), Gaps = 36/352 (10%) Query: 16 TIGDHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRS 53 +H PVLLE + L P V +D TFG GG+SR Sbjct: 1 MEFEHRPVLLEPTVDALLLPDFGGKGAARSHSQIEPDTATRADRGVFVDGTFGRGGHSRE 60 Query: 54 FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGV 107 ++ D+DP + + ++ F+ + + + VDGV Sbjct: 61 LLGRLGKSARLVVFDKDPE-AIAVANALAATDSRVTVVHGGFATMAEELQQLGIDKVDGV 119 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS QID +RGFSF + GPLDMRM G + ++ + QA+V ++ ++ GEE Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVAEWLAQASVDEMREVIADYGEE 179 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A ++A AI RR + P TT +L+ + V + HPATR+FQALRI++N E+E Sbjct: 180 RFAFQVAKAIAARRATRPLCTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284 ELA+ L +A + L GG L V+SFHSLEDR+VK+ + + A + S + Sbjct: 239 ELARTLAAALELLAPGGRLAVISFHSLEDRMVKQCIVAAARPAAAHARLPLRESEMPQPI 298 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336 +S+ + V ++VA N R+RSA LR RT E + + ++ +L Sbjct: 299 LRSLGR--VQAEDDEVAGNARARSAVLRVAERT-ETPLPPEGGFAFVKIGSL 347 >gi|311103994|ref|YP_003976847.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310758683|gb|ADP14132.1| S-adenosyl-methyltransferase MraW [Achromobacter xylosoxidans A8] Length = 364 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 117/352 (33%), Positives = 177/352 (50%), Gaps = 36/352 (10%) Query: 16 TIGDHVPVLLEKVIALLNP----------------------APGKVILDATFGAGGYSRS 53 +H PVLLE + L A V +D TFG GG+SR Sbjct: 1 MEFEHRPVLLEPTVDALLLPDFGGKGATRSHQQAGPATATRAEDGVFVDGTFGRGGHSRE 60 Query: 54 FCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGV 107 ++ D+DP + + ++ F+ + + + VDGV Sbjct: 61 LLGRLGKAARLVVFDKDPE-AIAVANALAAADPRVTVVHGGFATMAEELEQLGIGKVDGV 119 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS QID +RGFSF + GPLDMRM G + +D + QA+V ++ ++ GEE Sbjct: 120 MLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEE 179 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A ++A AI RR + P +TT +L+ + V + HPATR+FQALRI++N E+E Sbjct: 180 RFAFQVAKAIAARRATRPLRTTLELAECVASAVRT-REKGQHPATRTFQALRIYINRELE 238 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAV 284 ELA+ L +A L GG L V+SFHSLEDR+VK+ A+ + A + S V Sbjct: 239 ELARTLAAALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPV 298 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336 +S+ + V+ ++V+ N R+RSA LR RT E + + ++ +L Sbjct: 299 LRSLGR--VLAEDDEVSANARARSAVLRVAERT-ETPLPAEGGFAFVKIGSL 347 >gi|157412528|ref|YP_001483394.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9215] gi|262824943|sp|A8G2H7|RSMH_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157387103|gb|ABV49808.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 300 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 172/318 (54%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV- 61 M + + + +H V+ ++++A L ++ +DAT G GG+S + + S + Sbjct: 1 MQTDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELN 60 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 I LD+DPFA + + ++K + + + F+ D+VP + V V+ DLGV+S QID Sbjct: 61 IIGLDQDPFARISASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDD 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSFQK GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I Sbjct: 118 PKRGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLD 177 Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + T + S+ + +IHPATR+FQALRI VN EIE L + L++ + Sbjct: 178 LKENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPE 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG++ ++SFHSLEDRLVK F + +++TKK + P++ Sbjct: 238 WLLPGGIISIISFHSLEDRLVKSSFK-----------------NDQRLKNLTKKPITPSE 280 Query: 298 EDVAFNRRSRSAKLRAGM 315 ++V FN+R+RS KLR Sbjct: 281 QEVEFNKRARSGKLRIAQ 298 >gi|162447772|ref|YP_001620904.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] gi|263433290|sp|A9NGP8|RSMH2_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|161985879|gb|ABX81528.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] Length = 344 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 29/316 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H +++++++ + G+V +D T G GG+S+ K ++ +D+DP Sbjct: 44 NTPAGMHRSIMVDEILHFFDIKLGQVGIDLTTGFGGHSKEILKKLNHTGHLHGIDQDPIE 103 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + Y + F+L Q F + G D ++ DLGVSSMQID DRGF+F Sbjct: 104 LPKTRARLESYGFNKDNFTLHQLNFKDFDAIDTE-GFDFILADLGVSSMQIDNPDRGFTF 162 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPF 185 ++ GPLD+RM+ + GI A + + + ++ +L +E A IA I K + Q Sbjct: 163 REEGPLDLRMNPNVGIPAYVRLLEMSEIEIEHMLIENADEIYAKEIAKEITKAKIQGRYI 222 Query: 186 QTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +TT DL +I + ++R+FQALRI VN+E E L + L L Sbjct: 223 RTTLDLHQVIASALQKVSKKVYEEELKKASSRTFQALRIDVNSEYEVLFEMLDKLPGKLN 282 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + ++SFHS EDRLVKK F + T+ ++P++E+V Sbjct: 283 PGGKVAILSFHSGEDRLVKKAFKQYLNDGVFSM---------------TEGPILPSKEEV 327 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR ++ Sbjct: 328 FNNPRARSAKLRIAIK 343 >gi|33864313|ref|NP_895873.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9313] gi|42559451|sp|Q7V4B2|RSMH_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33641093|emb|CAE22222.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 310 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 164/318 (51%), Gaps = 31/318 (9%) Query: 10 SSAIHHTIG-DHVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKMGS--NV 61 S+I+ G H+ V+ + V + P G +I+DAT G GG+S + + Sbjct: 3 DSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRL 62 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 I LD+DP A + E + + ++ ++ F D+ P + V+ DLGVSS Q+D Sbjct: 63 IGLDQDPTARAAAAERLALFGDRVTIVATNFV---DFSPAEPAVVVMADLGVSSPQLDVA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-- 178 RGFSF+ GPLDMRM+ G +A++++ + +L ++ GEE+ + RIA I Sbjct: 120 QRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDL 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 Q T ++ +++ RIHPATR+FQALRI VNNE++ L + L+ A Sbjct: 180 AEQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDW 239 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GGLL V+SFHSLEDR VK F + +T+K +V ++ Sbjct: 240 LVPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEM 282 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N RSRSAK R R Sbjct: 283 EIAANPRSRSAKCRFARR 300 >gi|331084062|ref|ZP_08333169.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402424|gb|EGG81994.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 6_1_63FAA] Length = 349 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74 G H+ + +++++ L PG++ LDAT G GG+S + ++ ALD DP + Sbjct: 50 GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + ++ Q F+ + + G D V+ DLGVSSMQID +RGF+++ Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTT 188 GPLD+R++ GIS ++ + + +L +L +E A I++ I + R+ P TT Sbjct: 170 GPLDLRLNPEKGISVAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229 Query: 189 QDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L ++K + K R+FQALRI VN+E E L + L G Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVKK F + + I+K V+ P+ E+ A N Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREGVYSE--------------ISKDVIRPSAEECARN 335 Query: 304 RRSRSAKLRAGMR 316 RSRS K+R ++ Sbjct: 336 SRSRSTKMRWAIK 348 >gi|260587648|ref|ZP_05853561.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|260541913|gb|EEX22482.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] Length = 349 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74 G H+ + +++++ L PG++ LDAT G GG+S + ++ ALD DP + Sbjct: 50 GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + ++ Q F+ + + G D V+ DLGVSSMQID +RGF+++ Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTT 188 GPLD+R++ GISA++ + + +L +L +E A I++ I + R+ P TT Sbjct: 170 GPLDLRLNPEKGISAAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229 Query: 189 QDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L ++K + K R+FQALRI VN+E E L + L G Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVKK F + + I+K V+ P+ E+ A N Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREGVYSE--------------ISKDVIRPSAEECARN 335 Query: 304 RRSRSAKLRAGMR 316 RSRS K+R ++ Sbjct: 336 SRSRSTKMRWAIK 348 >gi|78213939|ref|YP_382718.1| methyltransferase [Synechococcus sp. CC9605] gi|123577439|sp|Q3AGW9|RSMH_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78198398|gb|ABB36163.1| methyltransferase [Synechococcus sp. CC9605] Length = 294 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 160/308 (51%), Gaps = 28/308 (9%) Query: 20 HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVL + V+ P P +++DAT G GG+S + +I LD+D A + Sbjct: 6 HVPVLADAVLDAARRIPRPDGLLIDATLGGGGHSALLLEQHPGLRLIGLDQDATARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ S+ F+ DYVP + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLASFGDRVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQDL 191 RM+ G +A++++++ +L ++ GEE+ + RIA I + T Sbjct: 123 RMNAGGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDRGSYDGTAALA 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ S+ RIHPATR+FQALRI VN+E+ L + L+ A L+ GLL ++SFH Sbjct: 183 YAVAGCYPPKSRRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPDGLLGIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F Q IT+K VV T+++ N R+RSAK Sbjct: 243 SLEDRRVKTAF-----------------LRDERLQRITRKPVVATEQEEEANPRTRSAKW 285 Query: 312 RAGMRTVE 319 R R Sbjct: 286 RVAQRLAA 293 >gi|227833499|ref|YP_002835206.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262184487|ref|ZP_06043908.1| S-adenosyl-methyltransferase MraW [Corynebacterium aurimucosum ATCC 700975] gi|263446134|sp|C3PHG4|RSMH_CORA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|227454515|gb|ACP33268.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 347 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 23/339 (6%) Query: 10 SSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS-- 59 I++ + + HVPV+ ++ LL PA VI+D T GAGG+S F Sbjct: 4 DGTINYDVSENHGHVPVMRARMAQLLAPAIEAAGENAVIVDGTLGAGGHSEYFLTTFPSV 63 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATF-----------SQLQDYVPDKGVDGVV 108 +I +DRD ++S + + ++F A F S++ + G+ G + Sbjct: 64 RIIGVDRDSASLSSASRRLSPFADRFVGVNARFDEVGSAIAEGESEVFSIAREHGIAGAL 123 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D DRGF+++ PLDMRM G++A+D++N + DL RIL G+E+ Sbjct: 124 FDLGVSSMQLDQVDRGFAYKTDAPLDMRMDPRQGMTAADILNTYSHGDLARILKTYGDER 183 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIE 226 A +IA A+++ R+ PF + L L+ T+ ++ HPA R+FQALR+ VN E+E Sbjct: 184 FAGKIASAVLREREKEPFGNSARLVDLLYATIPAATRRTGGHPAKRTFQALRVEVNRELE 243 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 + Q + AL GG + +S+ SLEDR+VK F S + A + Sbjct: 244 AIEQVIPVITDALSIGGRAVFMSYQSLEDRIVKHAFTKLSTSTTPAGLPMDLPGTAAHYS 303 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325 +T+ +QE++A N R+ S ++RA R + Sbjct: 304 VVTRGAEKASQEEIAENPRAASVRVRALERLEGTPSFHE 342 >gi|315655245|ref|ZP_07908146.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii ATCC 51333] gi|315490500|gb|EFU80124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii ATCC 51333] Length = 378 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 168/342 (49%), Gaps = 28/342 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSR 52 + H PVL E LL PA G V++DAT G GG+S Sbjct: 1 MKSVAEIHQPVLAEVCADLLAPALTPASESVNPLSSTADFHNVQGPVLVDATLGMGGHSA 60 Query: 53 SFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107 + + I +DRDP A + D+ + S+ T+ +L D + VDG+ Sbjct: 61 YLLERHPQLRIIGIDRDPQARDLAASRLSDFANRLSIVGTTYGELDDVLAQHGLRQVDGI 120 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGE 165 + DLGVSS+Q+D +RGF++ SG +A+D +N A +++ +L GE Sbjct: 121 LADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAQAEEIAAVLHTYGE 180 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224 EK + +A AIVK RQ+ P Q + L +I+ T+ + +PA R+FQALR+ VN+E Sbjct: 181 EKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDE 240 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + +L + L A +++ GG ++V S+ SLEDRLVK+ FA+ + Sbjct: 241 LGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPW 300 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 + +T + + +VA N R+ S +LRA ++T E E + Sbjct: 301 LRDLTHGSRLADESEVAQNPRAASLRLRAVVKTREPHPETRA 342 >gi|303278410|ref|XP_003058498.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla CCMP1545] gi|226459658|gb|EEH56953.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla CCMP1545] Length = 875 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 26/326 (7%) Query: 15 HTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H P +L + I L P V +D TFG GG+SR + A D DP A Sbjct: 484 QAHGTHTPAMLRETIDALVAPNRDGVYVDGTFGRGGHSRGILAALSNRGRLHAFDMDPEA 543 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDY--VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ ++ + +F++ A F + V GV DLG+SS Q D RGF + Sbjct: 544 IAEAKK-LEAEDARFTIHHAPFGCMDTVLKPKGVVVAGVFLDLGISSPQFDDASRGFRPE 602 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRI-----AHAIVKRRQS 182 + GPLD+R GI ASD + + DL R++ GE A+ A + + Sbjct: 603 QDGPLDLRFDVTRGIPASDYLRRVERDDLARVIETYGETADATAARRVADAVCLARETGE 662 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TT+ +SL+ + +HPA +FQALRI +N E +E+ +G+R+A + ++ G Sbjct: 663 GVPSTTKAFASLVARAKGQEYQA-MHPAKLTFQALRIELNQEFDEMRRGMRAAVEVMEDG 721 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------------FQSITK 290 G L V+++ E ++ FF + + Sbjct: 722 GRLGVLTWKHSECAILVDFFRHVEETRPDLPLARFLEDRHPSVAAEVALANSDGWALTAD 781 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 P++++ N RSRSA L + Sbjct: 782 DAKRPSEKETRENSRSRSAILHVLRK 807 >gi|149920500|ref|ZP_01908968.1| methyltransferase [Plesiocystis pacifica SIR-1] gi|149818681|gb|EDM78126.1| methyltransferase [Plesiocystis pacifica SIR-1] Length = 331 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 155/316 (49%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H VL E V+ L PA P ++D T GAGG++ + + V+ +DRDP A+ Sbjct: 5 HESVLAEAVVTALVPAIDSVPEGALVDVTCGAGGHTAALLARCTPNRVVLVDRDPAALEH 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + A F+ + V ++ DLGVSS Q+D +RGFSF+ Sbjct: 65 ARRRLHGAACTVDFCHAPFADFAAELDRLGVGTVSALIADLGVSSHQLDTAERGFSFRAD 124 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +A+ + V +L R+L GEE +A+RIA AI+ R + Sbjct: 125 APLDMRMDPTRGETAAARLAAMTVDELVRVLRRYGEEAEAARIAPAILAARPQTTKVLAE 184 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + + + RIHPATR+FQALRI VN E+++L + L L GG + V+S Sbjct: 185 VVEQAMSARSRRALGKRIHPATRTFQALRILVNGELDQLDRLLEDGPARLAVGGRMGVIS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQ-------SITKKVVVPTQEDV 300 FHSLEDR VK+ FA + + F+ I++K VV + + Sbjct: 245 FHSLEDRPVKQRFAKLCRAPKLPASLPLTTAELEARGFRAHFGVPAEISRKGVVADEAER 304 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA+LRA R Sbjct: 305 ERNPRSRSARLRAIER 320 >gi|291551135|emb|CBL27397.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14] Length = 359 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 97/318 (30%), Positives = 166/318 (52%), Gaps = 29/318 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++ +++ L PG+ DAT G GG++++ + ++ A D DP Sbjct: 54 NTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMLERLKGEGHIYATDVDPEE 113 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + D + S+ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 114 SAKTRKRLADQGFGEDILSIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 173 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ +GPLD+R++ GISA++ ++ + ++L +L +E +A AI + R+ Sbjct: 174 FKVNGPLDLRLNQEKGISAAERLDNISEEELAGMLYENSDEPYCEELAKAITTEIRKGNR 233 Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L ++I+KT+ F NN+ R+FQALRI VNNE E L + + A Sbjct: 234 IDTTTKLRNVIEKTLDFLPNNKEKKDIIKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGA 293 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK GG + +++FHS ED+LVKK + + + + + VV P+ + Sbjct: 294 LKPGGRVAILTFHSGEDKLVKKALKAGYKEGIYSEYA--------------RDVVRPSAQ 339 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N R+RS K+R ++ Sbjct: 340 ECAQNGRARSTKMRWAVK 357 >gi|328873505|gb|EGG21872.1| hypothetical protein DFA_01758 [Dictyostelium fasciculatum] Length = 387 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 173/322 (53%), Gaps = 20/322 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PV++ +VI L+ G +DATFG GG++ + GS VIA+DRDP + Sbjct: 58 HKPVMVNEVIDRLHLKDGHCYIDATFGLGGHTLNILDRCKGSFVIAVDRDPKIFELTAKI 117 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG- 131 Y+++ FS L + ++ + GV+ D G SS+Q+D DRGFSF+K Sbjct: 118 RETYQDRLITLHGNFSNLSQLLKERGLDTLKISGVLMDFGCSSLQLDSPDRGFSFRKDFD 177 Query: 132 -PLDMRMSCSGISASD-----VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 PLDMRM+ + S ++N + + L I+ GEE+ ++AH I++RRQ Sbjct: 178 GPLDMRMNNTDTSTQRLTATDILNTFSNQQLRDIMYYYGEERHTLKVAHEIIRRRQYERI 237 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + T L +I+ + + + +R F++LR+FVN+E E+ +G+R AEK L GG L Sbjct: 238 EKTSQLVDIIESCIPYPAAMK--SISRIFRSLRMFVNDETGEIYRGMREAEKILAPGGNL 295 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNR 304 +V+SFHS+EDR+ K+FF +R R + H F+ + + + PT E++ +N Sbjct: 296 VVISFHSIEDRIAKRFFRNR---CAVKRSTLTPLQHDPSFEYVDGSQPLFPTDEEIEWNS 352 Query: 305 RSRSAKLRAGMRTVERSIEDDS 326 RS+ A +R+ RT + D Sbjct: 353 RSKPAIVRSATRTSSSPLILDD 374 >gi|194213931|ref|XP_001918167.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Equus caballus] Length = 401 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 186/341 (54%), Gaps = 38/341 (11%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIAL 64 ++ S+ H+PV++E+V+ L P G++ LD TFG+GG++R+ + S+ + AL Sbjct: 59 RSQDSSSEAMTKLHIPVMVEEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYAL 118 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQID 119 DRDP A + ++ Y +Q FSQ + + + +DGV+ DLG SSMQ+D Sbjct: 119 DRDPTAYALAEQLSELYPKQIRAMLGQFSQAEALLMKAGVQPETLDGVLLDLGCSSMQLD 178 Query: 120 CGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A +IA A Sbjct: 179 APERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASA 238 Query: 176 IVKRRQSAPFQTTQDLSSL-----IQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEE 227 IV+ R P TQ L+S+ +Y K H AT++FQA RIFVN+E+ E Sbjct: 239 IVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNDELNE 298 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF---------FASRSGKVMAVRHMIPS 278 L GL++A+K L+ GG L+ +SFHSLEDR+VK+F F + + + + S Sbjct: 299 LYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMAERFNLSARQKVIQSSQLGS 358 Query: 279 NAH----------PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 P +++ I K+VV P DV +N R RSA Sbjct: 359 GHKNKEGGSMGRAPIMWELIHKRVVTPEDHDVEYNLRERSA 399 >gi|307128732|ref|YP_003880762.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI] gi|306483194|gb|ADM90064.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI] Length = 306 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H PVLL++ + LL + +D TFG GG+S S K +IA D+D +++ Sbjct: 8 YHNPVLLDETLTLLVKEIDGIYIDTTFGGGGHSFSLLKKLNNKGRLIAFDQDIYSIKK-N 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + ++ V G++ DLG+SS QI+ RGFS + + LDM Sbjct: 67 NIIDTRFNLVKTNYIFIKKILKRYNLNKVSGILADLGISSHQINTPKRGFSIRSNSILDM 126 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM I+A ++N + +L I I G+ K + +A I+K+R+ + T DL ++ Sbjct: 127 RMDTFKKINAKYIINNYSYNELYNIFKIYGDRKNSKFLAKLIIKQRKKKIIKYTFDLINI 186 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ +F K ++ FQ+LRI VN+EI L L ++ LK GG + V+S+HS+E Sbjct: 187 LK--FFFKKKIENKFLSKIFQSLRIEVNDEINALKYLLNNSLSILKPGGRIAVISYHSIE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VKKF + + + +N P + K + ++E++ N RSRSA LR Sbjct: 245 DRIVKKFLKTGNFNGVVSYDGYGNNLSP--LILLKPKRIFSSKEEIKKNNRSRSAILRIA 302 Query: 315 MR 316 + Sbjct: 303 EK 304 >gi|196231370|ref|ZP_03130229.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] gi|196224706|gb|EDY19217.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] Length = 351 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 25/316 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 ++ G H P+++ +++ +L P PG+ +DAT G GG+SR + G +I LD D Sbjct: 44 ASGKTPAGMHRPIMVSEIMEILAPKPGEFAVDATLGYGGHSREILQRITPGGRLIGLDVD 103 Query: 68 PFAVSCGQETMRD---YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121 P + + +R + F+ + ++ L + + D ++ DLG+SSMQID Sbjct: 104 PLELPKTEARLRALGFGPDVFTAQRVNYAGLPALIAREAPEGADIILADLGLSSMQIDNP 163 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGF+F+ GPLD+RM+ G AS ++ N L ++L +E A+ + AI+ + Sbjct: 164 SRGFTFKVEGPLDLRMNPERGQPASALLATINAAKLEQLLTENADEPNAALLTRAILDAQ 223 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHP-ATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P TT L+++I+ + + R FQALRI VN+E L LR + L Sbjct: 224 ARTPITTTTALATVIRTALASLPRIEPNDTIRRVFQALRIAVNDEFSALDTFLRHLPQCL 283 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG + +++FHS EDR VK F + ++ I + V+ P E+ Sbjct: 284 RPGGRIAILTFHSGEDRRVKHAFK--------------TGLQEGLYSEIARDVLRPGAEE 329 Query: 300 VAFNRRSRSAKLRAGM 315 + N RS SAKLR + Sbjct: 330 LRANPRSASAKLRWAV 345 >gi|297623827|ref|YP_003705261.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093] gi|297165007|gb|ADI14718.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093] Length = 339 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 113/295 (38%), Positives = 166/295 (56%), Gaps = 32/295 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP--------F 69 H PV+L + +A L P LD TFGAGG++R+ + G NV+ALDRDP Sbjct: 8 APHAPVMLAECLAHLAVKPQAWYLDGTFGAGGHTRALLEAGGNVLALDRDPSVTRFLPED 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ G+ + A + + GV+ DLGVSSMQ+D +RGFSF+ Sbjct: 68 ALASGRLRFVEGNFDALDRHAAAAGVGPL------AGVLLDLGVSSMQLDEAERGFSFRH 121 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM +G+ A+D+VN A+ ++L ++ GEE+ + RIA IV+ R AP TT Sbjct: 122 PGPLDMRMGPTGLCAADLVNSASQEELASVIFRYGEERYSRRIARRIVEARAKAPITTTD 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ +I + R HPA R+FQALR+ VN+E+ L + L +AE+AL GG L+V++ Sbjct: 182 ELAEIIARAYPPGPR-RDHPARRTFQALRVAVNDELGALERALAAAERALAPGGRLVVLT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +HSLEDR+VK+ F S + + +TKK + + E+VA N Sbjct: 241 YHSLEDRIVKRAFKSSA-----------------LLTPLTKKPLTASPEEVAANP 278 >gi|163814931|ref|ZP_02206319.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759] gi|158449870|gb|EDP26865.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759] Length = 348 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + + +++ PG+ LDAT G GG++ + ++ ALD DP Sbjct: 44 STPAGMHISICVNEILDFFQIQPGQQGLDATLGYGGHTMRMLEQLHGEGHMYALDVDPIE 103 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + D + ++ Q F + + D ++ DLGVSSMQID DRGF+ Sbjct: 104 IVKTKQRLADAGYGEDILTIKQTNFRNIDKVAEEAGKFDFILADLGVSSMQIDNPDRGFT 163 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ GPLD+R+ G SA++ + + + ++L + +E A IA I+KR ++ + Sbjct: 164 YKFDGPLDLRLDPEKGESAAERLREVSYEELVGMFQENSDEPYAEEIATVIMKRNRTKNY 223 Query: 186 -QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT + I++ + F K R FQALRI VN+E E L L AL Sbjct: 224 VETTIQMKEAIEEALSFVPEKERKEAVKKSCQRCFQALRIDVNSEFEVLYDFLDKLPDAL 283 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG + +++FHS EDRLVK+ F + + + ++K V+ P+ E+ Sbjct: 284 RPGGRVAILTFHSGEDRLVKRAFKAGAKAGVYSE--------------VSKDVIRPSAEE 329 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R ++ Sbjct: 330 CARNPRARSTKMRWAVK 346 >gi|303279384|ref|XP_003058985.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460145|gb|EEH57440.1| predicted protein [Micromonas pusilla CCMP1545] Length = 295 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 105/292 (35%), Positives = 151/292 (51%), Gaps = 14/292 (4%) Query: 39 VILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCG--QETMRDYKEQFSLFQATFS 93 +D T GAGG++ + ++ D DP A + + + F+A Sbjct: 3 TYVDGTMGAGGHACAVIGEHLELVTFVGFDVDPLAHAIAPRGARVLELNTVLDNFRAMRF 62 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQAN 152 +L + + VD ++ DLGVSSM +D +RGFSF GPLDMRM SA DVVN+ Sbjct: 63 RLDELELNGKVDAILLDLGVSSMHLDSPERGFSFGNDGPLDMRMGPSCAFSAMDVVNEWP 122 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPA 210 +D+ R++ GEEK IA I +RR AP TT L I + V ++ +HPA Sbjct: 123 EEDIARVIRDYGEEKHWRLIARRICERRAEAPILTTSALVRAIGRVPGVKKGRSGNVHPA 182 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 TR+FQ +RI VN+E+ + + +A AL GG L V+SFHSLED++VK F R+G+ Sbjct: 183 TRTFQGIRIAVNDELGAIEDAIPAAIDALAPGGRLGVISFHSLEDKIVKDIFRERAGRAP 242 Query: 271 AVR------HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P V + IT+K + +++V N RSRSAKLR + Sbjct: 243 PPDEGPVSAWAPQPEPPPKVVKLITRKPLSADEDEVRENARSRSAKLRVCEK 294 >gi|88809878|ref|ZP_01125384.1| methyltransferase [Synechococcus sp. WH 7805] gi|88786262|gb|EAR17423.1| methyltransferase [Synechococcus sp. WH 7805] Length = 312 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 157/314 (50%), Gaps = 31/314 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + HVPVL + ++ L+ P +++DAT G GG+S +I LD+ Sbjct: 8 TDSAFQHVPVLADVLLKTLDQEPSDHWQSGLVVDATLGGGGHSSLLLDRYPGLRLIGLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A + +R ++E+ ++ F+ DY P V+ DLGVSS Q+D RGFS Sbjct: 68 DATARAAAAARLRPWQERVTIVATNFA---DYSPPGSASLVLADLGVSSPQLDVAQRGFS 124 Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182 F+ GPLDMRM+ G +A+ ++ + DL ++ GEE+ + RIA I Q Sbjct: 125 FRLDGPLDMRMNPEGGGETAAQLIERLKESDLADLIYAYGEERLSRRIARRIKADLAVQG 184 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T ++ ++ RIHPATR+FQALRI VN+E+ L + L + L+ G Sbjct: 185 TYSGTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAVNHELAALDRLLEQSPDWLQPG 244 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G+L ++SFHSLEDR VK F + IT++ + ++++ Sbjct: 245 GMLAIISFHSLEDRRVKTAF-----------------LQDERLERITRRPLTASEDEQER 287 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 288 NARSRSAKLRIARR 301 >gi|325989697|ref|YP_004249396.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis KI3806] gi|323574782|emb|CBZ40442.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis] Length = 304 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+PV+L +V + + +D TFG GG+S+ + +I +D DP + Sbjct: 1 MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKELLRSLGENSRLIGMDVDPKVIPYAN 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131 E + +FS ++ +++Y DG++FDLG+S++Q+ +R FS+ S Sbjct: 61 E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 L++R G S +++N K L I G +A R+ I++ R++ P + L Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVKQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+++ +K +P FQ+LRI NNE+ + LR A + LK G L++++FH Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED +V ++ S + P F + ++P++ ++ N SRSAKL Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAKL 296 Query: 312 RAGMRTVE 319 +T E Sbjct: 297 WVFTKTRE 304 >gi|78185678|ref|YP_378112.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9902] gi|123581009|sp|Q3AW00|RSMH_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78169972|gb|ABB27069.1| methyltransferase [Synechococcus sp. CC9902] Length = 294 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 28/307 (9%) Query: 20 HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVL + V+A P V++DAT G GG+S + +I LD+DP A + Sbjct: 6 HVPVLADAVVAGAEHLPHHNGVLIDATLGGGGHSALLLERFPGLRLIGLDQDPTARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ + F+ Y P V V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLAAFADRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TTQDL 191 RM+ G +A++++++ L ++ GEE+ + RIA I + T Sbjct: 123 RMNPGSDGETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALA 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GG++ V+SFH Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLQQAPDWLETGGVMGVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + IT+K V T ++ N RSRSAK Sbjct: 243 SLEDRRVKTAF-----------------LQDERLERITRKPTVATDDEQNRNPRSRSAKW 285 Query: 312 RAGMRTV 318 R R Sbjct: 286 RLARRVN 292 >gi|318040652|ref|ZP_07972608.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0101] Length = 309 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 159/312 (50%), Gaps = 32/312 (10%) Query: 15 HTIGDHVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGSNV--IALD 65 DHVPVL E V+A G V++D T G GG+S + + I LD Sbjct: 10 SATFDHVPVLAEPVLAGFAELEGLLDQRGEGVLIDCTLGGGGHSALLLEAHPRLRLIGLD 69 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A + + + + ++ + F+ Y P + V V+ DLGVSS Q+D +RGF Sbjct: 70 QDPTARAAAAQRLAPFGDRVEIVATNFA---TYTPAEPVVAVLADLGVSSPQLDVAERGF 126 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQS 182 SF+ GPLDMRM+ G +A+ ++++ + +L ++ GEE+ + RIA I Q Sbjct: 127 SFRLDGPLDMRMNPDAGETAAALIDRLDETELADLIYAYGEERLSRRIARRIKHDLAEQG 186 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 A T ++ ++ RIHPATR+FQALRI VN+E+ L + L SA L G Sbjct: 187 AYGGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLSSAPDWLVPG 246 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 GL V+SFHSLEDR VK F S Q IT+K V+ T E+ Sbjct: 247 GLFGVISFHSLEDRRVKTAFVSDE-----------------RLQRITRKAVMATTEEEER 289 Query: 303 NRRSRSAKLRAG 314 N RSRSA+LR Sbjct: 290 NPRSRSARLRLA 301 >gi|319440248|ref|ZP_07989404.1| 16S rRNA m(4)C1402 methyltranserfase [Corynebacterium variabile DSM 44702] Length = 340 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 27/312 (8%) Query: 20 HVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 HVPV+ ++++ L+ P VI+D T GAGG++ F + + V+ LDRDP Sbjct: 14 HVPVMRDRMVELVGAGVEGTGATRP--VIVDGTLGAGGHTEVFLETFPDAVVVGLDRDPN 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSM 116 A++ Q+ + + ++F ++ F L D + D GV G +FDLGVSSM Sbjct: 72 AIAQAQDRLARFGDRFIAYRTRFDGLGDALDDLASDGRLPGEFATTGVSGYLFDLGVSSM 131 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF++ + PLDMRM +A++V+N + DL +L G+E+ A +IA A Sbjct: 132 QLDQAERGFAYSQDAPLDMRMDPDSPLTAAEVLNTYSHGDLAHVLSAYGDERFAGKIASA 191 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +++ R+ PF T+ L L+ +T+ ++ HPA R+FQALR+ VN E++ LA + + Sbjct: 192 VLREREQEPFTTSGRLVELLYRTIPAATRRTGGHPAKRTFQALRVEVNAELDSLAAVIPA 251 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A L GG+ + +S+ SLED++VKK A + + A F +T+ Sbjct: 252 ATARLGLGGVAVFMSYQSLEDKIVKKALAELTANRTPPGLPVDLPDTAASFDLVTRGAEK 311 Query: 295 PTQEDVAFNRRS 306 ++ N RS Sbjct: 312 ADAAEIERNPRS 323 >gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera] Length = 444 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 168/366 (45%), Gaps = 51/366 (13%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSF 54 + + ++ HVPV+L +V+ + +P + +D T GA G+S + Sbjct: 78 SDREFDKEQAMVYGGTATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAI 137 Query: 55 CKMGSNV---IALDRDPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYV 99 + + + +D DP A Q +R + F ++ ++ + + Sbjct: 138 IQAHPELELYVGMDVDPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEEL 197 Query: 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTR 158 GVDG++ DLG+SSMQ++ +RGFS +GPLDMRM ++A D++N ++ R Sbjct: 198 LSSGVDGILMDLGMSSMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGR 257 Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQ 215 IL GEE + + IVK R +T +L LI+KT ++ I ATR FQ Sbjct: 258 ILREYGEESNWRSLQNKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQ 317 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF------------- 262 ALRI VN+E++ L L + + L GG L V+SFHSLEDR+VK+ F Sbjct: 318 ALRIAVNDELKTLEDSLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESG 377 Query: 263 ------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 + I +TK+ + P++E+ NRRSRSAK Sbjct: 378 EGGGQEGCGKDLRNIRNDNDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAK 437 Query: 311 LRAGMR 316 LR + Sbjct: 438 LRVIQK 443 >gi|315656834|ref|ZP_07909721.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492789|gb|EFU82393.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 378 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 28/342 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSR 52 + H PVL LL PA G V++DAT G GG+S Sbjct: 1 MKSVAEIHQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSA 60 Query: 53 SFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107 + + I +DRDP A + D+ + S+ T+ +L D + VDG+ Sbjct: 61 YLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGI 120 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGE 165 + DLGVSS+Q+D +RGF++ SG +A+D +N A V+++ +L GE Sbjct: 121 LADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGE 180 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224 EK + +A AIVK RQ+ P Q + L +I+ T+ + +PA R+FQALR+ VN+E Sbjct: 181 EKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDE 240 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + +L + L A +++ GG ++V S+ SLEDRLVK+ FA+ + Sbjct: 241 LGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPW 300 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 + +T + + +VA N R+ S +LRA +T E E + Sbjct: 301 LRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPETRA 342 >gi|298346700|ref|YP_003719387.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389591|ref|ZP_07371553.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236761|gb|ADI67893.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327144|gb|EFL94380.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 379 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 28/342 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSR 52 + H PVL LL PA G V++DAT G GG+S Sbjct: 1 MKSVAEIHQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSA 60 Query: 53 SFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGV 107 + + I +DRDP A + D+ + S+ T+ +L D + VDG+ Sbjct: 61 YLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGI 120 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGE 165 + DLGVSS+Q+D +RGF++ SG +A+D +N A V+++ +L GE Sbjct: 121 LADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGE 180 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224 EK + +A AIVK RQ+ P Q + L +I+ T+ + +PA R+FQALR+ VN+E Sbjct: 181 EKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDE 240 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + +L + L A +++ GG ++V S+ SLEDRLVK+ FA+ + Sbjct: 241 LGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPW 300 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 + +T + + +VA N R+ S +LRA +T E E + Sbjct: 301 LRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPETRA 342 >gi|294787094|ref|ZP_06752348.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305] gi|315226746|ref|ZP_07868534.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM 10105] gi|294485927|gb|EFG33561.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305] gi|315120878|gb|EFT84010.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM 10105] Length = 348 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 + H PVLL+ + L+ +I+D T G G++ +F + +I +DRD Sbjct: 1 MTDLASIHTPVLLDDCVRLITDGRQAPLIVDCTLGLAGHASAFLQADPQARLIGIDRDQE 60 Query: 70 AVSCGQETMRDYK--EQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 A++ E MRD ++F+ A +FSQ+ D K VD V DLG+SS+QID DRG Sbjct: 61 ALTLATERMRDLGLSDRFTPVHAAFDSFSQVLDEQGIKTVDAVFMDLGLSSLQIDENDRG 120 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQS 182 FS+ PLDMRM ++A DV+ +DL RI G+E+ A IA +VK R + Sbjct: 121 FSYSHDAPLDMRMDPGQSLTARDVLLTYGRQDLARIFREYGQERFAGPIASRLVKAREEG 180 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 ++T L +L+ + + + +PA R FQALRI VN E+++L L A L G Sbjct: 181 ETPRSTGQLVALVDQVIPRAHRAPGNPAKRVFQALRIEVNGELDKLRMTLPQAACRLNLG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+V S+HSLEDR+ K F AS + + F +T+ V Q + A Sbjct: 241 GCLVVESYHSLEDRITKTFMASGIHADVPAGLPVIPQEAQPFFADLTRGAVKAGQAEAAH 300 Query: 303 NRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 NSRSTSVRLRAVE 313 >gi|253577924|ref|ZP_04855196.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA] gi|251850242|gb|EES78200.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA] Length = 351 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 161/317 (50%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ LN PG+ DAT G GG++++ + ++ A D DP Sbjct: 47 NTPAGMHISIMVKEILDFLNIQPGETGFDATLGYGGHTKAMLQCLNGKGHIYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + E ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTKKRLAEQGFGEELLTVKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA+ ++ + ++L +L +E +A AI + R+ Sbjct: 167 FKTDGPLDLRLNQETGISAAQRLDTISREELAGMLCENSDEPYCEELAKAITDEIRRGNH 226 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+KT+ F K R+FQALRI VN+E E L + + AL Sbjct: 227 IDTTTKLRQVIEKTLDFLPEKEKKETIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPDAL 286 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG + +++FHS ED+LVKK + + + K V+ P+ ++ Sbjct: 287 RPGGRVAILTFHSGEDKLVKKALKAGYKDGIYSDYA--------------KDVIRPSAKE 332 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 333 CTQNPRARSTKMRWAIK 349 >gi|294791087|ref|ZP_06756245.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304] gi|294458984|gb|EFG27337.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304] Length = 342 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 161/318 (50%), Gaps = 16/318 (5%) Query: 13 IHHTIGDHVPVLLEKV-------IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIA 63 + H PVLL++ + VI+D T G G++ +F S +I Sbjct: 2 MTDIASIHTPVLLDECCQLVCGGLDQAAADRTPVIVDCTLGLAGHASAFLARASRARLIG 61 Query: 64 LDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 +DRD A+ + M++ + ++F A F + ++ VD V DLG+SS+QI Sbjct: 62 IDRDREALDLATDRMKNLGFADRFIPLHAAFDDFSSLMENQGLDTVDAVFMDLGLSSLQI 121 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA-I 176 D DRGFS+ PLDMRM +A D++ +++ ++LTRI G+E+ + +IA A + Sbjct: 122 DESDRGFSYSHDAPLDMRMDTDQTVTAQDILRESSKEELTRIFRHYGQERYSRQIASALV 181 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +R + P +TT L L+ + V S + +PA R FQALRI VN E+++LA L Sbjct: 182 RQRDKGHPVETTGQLVQLVDRVVPKSHRSGGNPAKRVFQALRIQVNGELDKLAATLPQIA 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG L+V S+HSLED++VK F A + + + F +T + Sbjct: 242 LHLSLGGRLVVESYHSLEDKIVKSFMAQGLQANLPPGLPVIPDDAQPFFTDLTHGAIKAD 301 Query: 297 QEDVAFNRRSRSAKLRAG 314 Q++ N RS S +LRA Sbjct: 302 QDEAEHNSRSTSVRLRAV 319 >gi|325662020|ref|ZP_08150639.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471683|gb|EGC74902.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 4_1_37FAA] Length = 374 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 28/317 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD DP Sbjct: 72 VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131 Query: 74 GQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + E ++ Q F+ + + D V+ DLGVSSMQID +RGF+++K Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R++ G+SA++ + + ++L +L +E A IA ++++ R+ P +T Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAVTVMEKLRKGEPVET 251 Query: 188 TQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L I++ + F K R+FQALRI VN+E E L + AL G Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS EDR+VKK F + I + V+ P+ E+ Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAGIYSE--------------IAQDVIRPSAEECTR 357 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS K+R +R E Sbjct: 358 NSRARSTKMRWAVRAKE 374 >gi|320533237|ref|ZP_08033944.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171 str. F0337] gi|320134542|gb|EFW26783.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171 str. F0337] Length = 329 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 161/314 (51%), Gaps = 24/314 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKMGS--NV 61 +G H PVLLE+ + LL PA V++D T G GG++ + + V Sbjct: 14 VGRHQPVLLERCLDLLAPAIEGHADSTSTGGPARPVMIDCTLGMGGHTEAALERFPALKV 73 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115 + +DRDP A++ + + ++F QAT+ + + VD V+ DLGVSS Sbjct: 74 VGIDRDPEAIALASARLARFGDRFIAVQATYDAVNRVAREHSARAEGAVDAVLMDLGVSS 133 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D RGFS+ + PLDMRM SG++A D++ A+ +L+RIL GEE+ ASRIA Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLETADAVELSRILRTYGEERFASRIAA 193 Query: 175 AIVKRRQ--SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 AIV+RRQ T + Q ++ + HPA R+FQALRI VN E++ L + + Sbjct: 194 AIVRRRQAGEPVVSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A +L+ GG L+V S+ SLEDR+VK+ A + + + +T Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPETDRPYLELLTSGA 313 Query: 293 VVPTQEDVAFNRRS 306 ++ N RS Sbjct: 314 EKADARELDHNPRS 327 >gi|331085870|ref|ZP_08334953.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406793|gb|EGG86298.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 374 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 28/317 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD DP Sbjct: 72 VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131 Query: 74 GQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + E ++ Q F+ + + D V+ DLGVSSMQID +RGF+++K Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R++ G+SA++ + + ++L +L +E A IA ++++ R+ P +T Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAATVMEKLRKGEPVET 251 Query: 188 TQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L I++ + F K R+FQALRI VN+E E L + AL G Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS EDR+VKK F + I + V+ P+ E+ Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAGIYSE--------------IAQDVIRPSAEECTR 357 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS K+R +R E Sbjct: 358 NSRARSTKMRWAVRAKE 374 >gi|295839424|ref|ZP_06826357.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74] gi|295827469|gb|EFG65411.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74] Length = 312 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 108/289 (37%), Positives = 165/289 (57%), Gaps = 10/289 (3%) Query: 22 PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 PV+L + + LL PA PG V++D T G GG+S + ++ALDRD A+ E Sbjct: 2 PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ L A + +L D + V GV+FDLGVSSMQ+D RGF++ + PL Sbjct: 62 RLAPFGERALLAHAVYDELPDVLERLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDAPL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 122 DMRMDQSAGMSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFTRSARLV 181 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + +K +PA R+FQALRI VN E+ L + + +A +L GG + V+++H Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNSLAVGGRIAVLAYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 SLEDRLVK+ ++ + + + + +T+ +P +E+V Sbjct: 242 SLEDRLVKQVLSTGATGTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290 >gi|332670119|ref|YP_004453127.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484] gi|332339157|gb|AEE45740.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484] Length = 337 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 180/313 (57%), Gaps = 10/313 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAP---GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H PVLL++ + LL PA G V++D+T G GG++ + V+ +DRDP Sbjct: 8 DAATRHTPVLLQRCLDLLAPALAADGSVMVDSTLGMGGHTEGVLRAFPHVRVVGIDRDPQ 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + + ++F+ A + ++ + + V GV+ DLGVSS+Q+D +RGFS Sbjct: 68 ALALAGRRLAPFGDRFTGVHAVYDEIGEVLDGLGIDHVQGVLMDLGVSSLQLDERERGFS 127 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM G +A+DVVN + +DL R+L + GEE+ A+RIA ++V+ R+ AP Sbjct: 128 YAHDAPLDMRMDASRGQTAADVVNGYDERDLARVLRVYGEERFAARIARSVVRAREKAPL 187 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L L++ ++ ++ HPA R+FQALRI VN E+E L + L ++ +AL GG Sbjct: 188 TRTGELVDLVRASIPAATRKTGGHPAKRTFQALRIEVNGELEVLERALPASVEALAVGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V ++HSLEDRLVK+ A+ + + H + +T+ + ++A N Sbjct: 248 IVVEAYHSLEDRLVKRTLAAGATSSAPPDLPVEPETHAPYLRLVTRGAEEADEAELARNP 307 Query: 305 RSRSAKLRAGMRT 317 R++S +LRA R Sbjct: 308 RAQSVRLRAAERI 320 >gi|116073986|ref|ZP_01471248.1| methyltransferase [Synechococcus sp. RS9916] gi|116069291|gb|EAU75043.1| methyltransferase [Synechococcus sp. RS9916] Length = 305 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 109/313 (34%), Positives = 155/313 (49%), Gaps = 31/313 (9%) Query: 15 HTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 HVPVL E ++ L +P + +DAT G G+S +I LD+D Sbjct: 9 PEAFAHVPVLAEPLLEALAASPESPWEKGLFIDATLGGAGHSALLLDRYPQLRLIGLDQD 68 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A S Q + Y ++ + F+ DY P+ D V+ DLGVSS Q+D RGFSF Sbjct: 69 PTARSAAQVRLEPYGDRAEIVATNFA---DYQPEAPADLVLADLGVSSPQLDVAARGFSF 125 Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM+ G +A++++ + + L ++ GEE+ + RIA I + Sbjct: 126 RLDGPLDMRMNPQGGGETAAELIERLEEEPLADLIYAYGEERLSRRIARRIKADLKENGG 185 Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T ++ ++ RIHPATR+FQALRI VN+E+ L + L+ A L GG Sbjct: 186 YAGTADLAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLNPGG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +L ++SFHSLEDR VK F IT+K +V + + A N Sbjct: 246 VLAIISFHSLEDRRVKTAF-----------------LQDDRLARITRKPLVAAEAEEAAN 288 Query: 304 RRSRSAKLRAGMR 316 RSRSAKLR R Sbjct: 289 PRSRSAKLRLARR 301 >gi|197304029|ref|ZP_03169061.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC 29176] gi|197296997|gb|EDY31565.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC 29176] Length = 351 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 94/318 (29%), Positives = 165/318 (51%), Gaps = 29/318 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ L+ PG+ DAT G GG++++ + ++ A D DP Sbjct: 47 NTPAGMHISIMVKEILDFLDIQPGQTGFDATLGYGGHTKAMLECLKGQGHIYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + E ++ F + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTKKRLEEQGFGEEILTVCLQNFCTIDEIAEKVGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ ++ + ++L +L +E +A AI + R+ Sbjct: 167 FKADGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITDEIRRGNR 226 Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L ++I+KT+ F +N+ R+FQALRI VNNE E L + + A Sbjct: 227 IDTTTKLRNVIEKTLSFLPDNKEKKDIVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPDA 286 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG + +++FHS ED+LVKK + + + K V+ P+ + Sbjct: 287 LRPGGRVAILTFHSGEDKLVKKALKAGYKAGIYSDYA--------------KDVIRPSAQ 332 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N R+RS K+R ++ Sbjct: 333 ECAKNGRARSTKMRWAVK 350 >gi|168700539|ref|ZP_02732816.1| S-adenosyl-methyltransferase MraW [Gemmata obscuriglobus UQM 2246] Length = 341 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 158/330 (47%), Gaps = 31/330 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 G H+PVLL +V+A L+P PG+ ++D T G G+S + +IA D D Sbjct: 25 STAEGAHIPVLLAEVLAALDPRPGQTVVDCTLGFAGHSLELLRRVAPDGLLIATDLDVGN 84 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + F L F+ L + VD V+ DLG+SSMQ+D DRGFSF Sbjct: 85 IEPARPKLEEAGGLFGLHHTNFAGLPTVLAIEGVTAVDAVLADLGMSSMQVDDRDRGFSF 144 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G +A+ ++ + +L LG+E QA IA A+V+ RQ+AP + Sbjct: 145 MRDGPLDMRMDRTRGRTAAQLLATLSRDELAACFSELGDEPQAGAIADAVVRERQTAPVE 204 Query: 187 TTQDLSSLIQKT----------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 T+ L +LI+ + + P TR FQALRI N E+ L Q LR Sbjct: 205 RTKQLRALIEAAAPVRIDRAPGAPPERKQLLAPVTRVFQALRILTNRELASLQQLLRVLP 264 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 LK GG+ ++SFHS EDRLVK F + ++ + T Sbjct: 265 TVLKPGGVAAIISFHSGEDRLVKAAFRDGLRAGVYSS--------------VSPDAIRST 310 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 E+ N R+RSAKLR R + + Sbjct: 311 FEERRANPRARSAKLRVARRAEAPPDAEPA 340 >gi|113954684|ref|YP_731835.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311] gi|123327560|sp|Q0I6T7|RSMH_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113882035|gb|ABI46993.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311] Length = 310 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL E ++ +L+ P ++DAT G GG+S+ + ++ LD+DP A + Sbjct: 14 HVPVLAETLMQVLSEQPPILWQNTAVIDATLGGGGHSKLILERFPGVRLVGLDQDPSARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ + F+ + P + V V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAASRLEPFLDRVQIVPVNFA---AFEPPEPVSLVLADLGVSSPQLDVASRGFSFRLDGP 130 Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TT 188 LDMRM+ G +A +++ + +V L ++ GEE+ + RIA I ++ T Sbjct: 131 LDMRMNPVAGGETAEEMIARLDVNALADLIYAFGEERLSRRIARRIKADLEAEGAYAGTA 190 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++ ++ RIHPATR+FQALRI VN+E+ L + L++A LK GG+L ++ Sbjct: 191 ALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQTAPGWLKPGGVLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + +T+K + ++++ A N RSRS Sbjct: 251 SFHSLEDRRVKTAF-----------------LQEERLERVTRKPFMASEQEQADNPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRIARR 301 >gi|333027784|ref|ZP_08455848.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071] gi|332747636|gb|EGJ78077.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 107/289 (37%), Positives = 165/289 (57%), Gaps = 10/289 (3%) Query: 22 PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 PV+L + + LL PA PG V++D T G GG+S + ++ALDRD A+ E Sbjct: 2 PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ L A + +L D + V G++FDLGVSSMQ+D DRGF++ + PL Sbjct: 62 RLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQDAPL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 122 DMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARSARLV 181 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + V+++H Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAVLAYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 SLEDRLVK+ ++ + + + + +T+ +P +E+V Sbjct: 242 SLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290 >gi|116626359|ref|YP_828515.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus Ellin6076] gi|122251651|sp|Q01Q40|RSMH_SOLUE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116229521|gb|ABJ88230.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus Ellin6076] Length = 286 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 25/303 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HVPV+ + I LL P V LDAT G GG+S + VIA DRD ++ + Sbjct: 1 MHVPVMPAEAIELLAIRPEGVYLDATAGLGGHSGLIARQLTTGTVIANDRDTRSLEMARA 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ ++ +F L D V G + V + DLGVS Q+ DRGFSF GPL Sbjct: 61 NTAEWSDRMCFHYGSFGSLSDAVSQAGFEKVDGLLADLGVSRYQLTAPDRGFSFMADGPL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A+D+VN + K L ++ +GEE++A RIA ++ P ++T L+ Sbjct: 121 DMRMDASIQTTAADLVNHTDEKTLADLIYQMGEERRARRIA---RAIVRARPLRSTLHLA 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ V + R+HPAT++F ALR+ VN+E EL + L A LK+GG ++V+SF S Sbjct: 178 DVVERAV--PRTGRLHPATKTFMALRMAVNDEPGELRRLLEIAPGLLKSGGRMVVISFMS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +DR+VK+ F A +TK + P+ E+ N SRSAKLR Sbjct: 236 SDDRMVKEKFKELGQSKQAT--------------ILTKHPLQPSDEESFNNPASRSAKLR 281 Query: 313 AGM 315 A Sbjct: 282 ALE 284 >gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879] gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879] Length = 374 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 98/326 (30%), Positives = 154/326 (47%), Gaps = 32/326 (9%) Query: 15 HTIGDHVPVLLEKVIALLN----------------PAPGKVILDATFGAGGYSRSFCKMG 58 H+PVLLE ++ + +V++D T G GG SR+ + Sbjct: 52 KEKSPHIPVLLEHMLDTFDRIFLSTHSHYIAKKSLIKNKEVLIDCTLGFGGMSRALLERY 111 Query: 59 SNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD------KGVDGVVFD 110 SN+ I +DRD +A+ +E+M +K++F F+ L + + G++ D Sbjct: 112 SNLHIIGIDRDSYALEYNRESMAKFKDRFQTRHGDFATLLPQIIKEIEANGDHLCGILAD 171 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170 +GVSS Q+D DRGFSF + + A +VN N +L I GE ++ Sbjct: 172 IGVSSYQLDSIDRGFSFHSNKLDMRMDRTQSLDADMIVNTYNKYELEEIFKNYGEIREYK 231 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 ++ + IV+ RQ SL + +IHPAT +QALRI VN+E+ +L Sbjct: 232 KLVNLIVQERQRGRIT----ADSLQNIALKLHSKAKIHPATLIYQALRIAVNDELGQLKS 287 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSI 288 L S + L V+SFHSLEDR++K+ F + + + A S+ Sbjct: 288 LLHSCQNLH--EVLFCVISFHSLEDRMIKESFKQFAKSCICDTTSFKCVCGNNHAKGFSL 345 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAG 314 KK ++ +++A N+RSRSAKLRA Sbjct: 346 YKKPLIADSKEIAQNKRSRSAKLRAF 371 >gi|160878432|ref|YP_001557400.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] gi|263433271|sp|A9KS30|RSMH1_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|160427098|gb|ABX40661.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] Length = 366 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 103/317 (32%), Positives = 157/317 (49%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + + +++ L PG+ LDAT G GG++R K ++ ALD DP Sbjct: 63 STPAGMHISICVNEILEFLQIKPGQKGLDATLGYGGHTREMLKCLESQGHMYALDVDPIE 122 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + +E +++ E ++ Q F+ + + V + G D V+ DLGVSSMQID DRGFS Sbjct: 123 IVKTRERLQNLGFGPEILTIKQLNFANIDEVVEEAGLFDFVLADLGVSSMQIDDPDRGFS 182 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 F+ GPLD+R++ GISA++ + + +L +L +E + I+ AIV + Sbjct: 183 FKTDGPLDLRLNPEKGISAAERLKTISQTELQGMLLENSDEPYSEEISKAIVNEIKRGNE 242 Query: 185 FQTTQDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L LI K + K R+FQALRI VNNE E L L L Sbjct: 243 IDTTTKLRDLISKVLVTIPENEQKEAIKKTCQRTFQALRIDVNNEYEVLYSFLEKLPNVL 302 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHS EDRLVKK F + + ++ V+ P+ E+ Sbjct: 303 AKGGRVAILTFHSGEDRLVKKSFKNLQRAGIYSE--------------VSDDVIRPSAEE 348 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 349 CNRNPRARSTKMRWAIK 365 >gi|312196214|ref|YP_004016275.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c] gi|311227550|gb|ADP80405.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c] Length = 341 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 160/299 (53%), Gaps = 10/299 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 H+PVLL++V LL P PG + +DAT G GG++ + + ++ LDRDP A Sbjct: 1 MQASHIPVLLDRVRTLLTPALTQPGAIAVDATLGLGGHAEAMLRALPELRLVGLDRDPQA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ +E + + A + ++ + V V+FDLGVSS+Q+D DRGF++ Sbjct: 61 LAASRERLAFAAGRVEFAHAVYDEIPAVLDRLGIPAVHAVLFDLGVSSLQLDLDDRGFAY 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM +G +A+DV+N + L R+L GEE A RIA A+V R F Sbjct: 121 SRDAPLDMRMDPTTGRTAADVLNTYDEAALARVLRRYGEEPFARRIAAAVVAERAREAFT 180 Query: 187 TTQDLSSLI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L+ L+ ++ +PA R+FQALRI VN E+E L + L +A + GG + Sbjct: 181 TSSRLADLVRAAIPAAARRTGGNPAKRTFQALRIEVNAELEVLERALPAALDRIAVGGRI 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+++HSLEDRLVK+ A + + + F+ +T+ PT+ + A N Sbjct: 241 AVLAYHSLEDRLVKRALADVTTTRVPPDMPVVPAEAEPTFRLLTRGSEPPTEAETAANP 299 >gi|149178739|ref|ZP_01857322.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797] gi|148842437|gb|EDL56817.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797] Length = 305 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 167/311 (53%), Gaps = 31/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL +VI L+ +PG +++D T GAGG+S K +I LDRD + + Sbjct: 13 HLPVLLREVITQLDLSPGLIVVDGTVGAGGHSEHILKKINNEGTLIGLDRDAMMLGFATQ 72 Query: 77 TMRD---YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + L Q+++++L + + + D V+ DLG+SS Q+ +RGF F+ + Sbjct: 73 KLKPESLPAGRCYLRQSSYAELPAVMEELQISSVDRVLLDLGLSSDQLSDDERGFGFESA 132 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 G LD+R G+ A ++ +L IL + GEE+ + RIA+ IVK+R++AP +T Sbjct: 133 GELDLRFDTRQGVPAWQLLESLPESELCEILEVYGEERFSQRIANQIVKQRKTAPVRTAA 192 Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLI 246 DL +Q+ + R +PATR FQALRI N E+E+L L + + L+ GG + Sbjct: 193 DLIKAVQQAIPGKALAAARKNPATRVFQALRIAANQELEQLETMLETVLPQVLQPGGRAV 252 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+ + P +++T K +V TQ + N R Sbjct: 253 IISFHSLEDRMSSRRLK------------------PGDLKNLTAKPIVATQAEQRVNPRC 294 Query: 307 RSAKLRAGMRT 317 R+AKLR ++T Sbjct: 295 RTAKLRVAVKT 305 >gi|313906115|ref|ZP_07839465.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] gi|313469055|gb|EFR64407.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] Length = 356 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 99/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+P+++++++ L PG LD T G GG+S ++ ++ +LD DP Sbjct: 48 NTPAGMHIPIMVDEILDCLKIEPGMTGLDCTLGYGGHSSRMLELLQGSGHLYSLDVDPIE 107 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + E MR E ++ F+ + D V+ DLGVSSMQID +RGFS Sbjct: 108 IQKTTERMRAKGFSEEIWTPVHTNFANIDRVCEQYGPFDFVLADLGVSSMQIDNPERGFS 167 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184 ++ GPLD+R + G SA++ + + ++L +L +E A IA A+ + P Sbjct: 168 YKTDGPLDLRFNPSKGESAAERLRSLDTEELIGLLIDNSDEPYAEEIAAAVASAFRKKEP 227 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----------IHPATRSFQALRIFVNNEIEELAQGLR 233 TT L LI KT+ R R FQALRI VN+E E L + + Sbjct: 228 LDTTTALRELITKTLLEDTPLRNALKTDQTEAVKKSCARVFQALRIDVNSEFEVLVEFMD 287 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 LK GG +++FHS EDR+VKK F N ++ +++ V+ Sbjct: 288 KLPHILKEGGRAAILTFHSGEDRIVKKEFKR--------------NQKDGLYTEVSRDVI 333 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++E+ N R+ S KLR +R Sbjct: 334 RPSKEECFRNPRAHSTKLRWAIR 356 >gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Camponotus floridanus] Length = 427 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 112/325 (34%), Positives = 174/325 (53%), Gaps = 28/325 (8%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79 PV+ ++V+ ++ +PGK +D TFGAGG++ F + S + ALDRDP A Q+ + Sbjct: 103 PVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIKIFALDRDPVAYKYAQQLSQ 162 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y + TFS+L + + +FD G SSMQI+ +RGFS K+GPLD Sbjct: 163 KYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSSMQIEDANRGFSLLKNGPLD 222 Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191 MRM+ +A+DV+++A +DL RI+ + G+EK+A +IA AI++ R +TTQ+L Sbjct: 223 MRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIARAIIEARYMFRKLETTQEL 282 Query: 192 SSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L++ + H A ++FQALRIFVNNE+ E+ G+ A LK G LI Sbjct: 283 IQLVESVLDDEIRTDNLDKYSHSAVKTFQALRIFVNNELNEINYGILLANIYLKLSGRLI 342 Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +SF+SLED ++K+ + + ++ + K V+ Sbjct: 343 TISFNSLEDTIIKRHLSGNITDNVANTVALKYANYGKVFNTNEFQILTEKPWKMMHKHVL 402 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 PT E++ N +S+SAKLRA M+ Sbjct: 403 TPTSEEIEINPKSQSAKLRAIMKVK 427 >gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum ferrodiazotrophum] Length = 305 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 157/303 (51%), Gaps = 21/303 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 H PV+L + + L+ PG+ +DA G GG++R G +V+A+DRD AV +E Sbjct: 9 SSSHRPVMLAESMEWLDVRPGQWYVDANLGGGGHTREILARGGSVVAIDRDKGAVLAARE 68 Query: 77 -TMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + + V + V G++FDLG S++Q + +RG SF + GPL Sbjct: 69 HLLPLYPDRLRIIHGNNRNVASLVRQEGQHVSGILFDLGWSTIQGEDPERGLSFTEEGPL 128 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMR+ ++ + ++ + + G+E A+ IA A+V+ R+ T + Sbjct: 129 DMRLDTEQKETAEDLLESLSESELERVLSEGDEPLAAPIARALVQARREGRLPRTTTALA 188 Query: 194 LIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG-GLLIVVS 249 VY+ + +R HPATR F ALRI VN E E L + L A + L A G LIV+S Sbjct: 189 AFVSGVYYRKGFRRSRRHPATRVFMALRIRVNREYENLEESLSGARELLSATGGRLIVLS 248 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHS EDR+VK+ F G+ A F + ++ +VP E+V+ N R+RSA Sbjct: 249 FHSGEDRIVKRCFRLWVGEG------------EAAF--LFRRSLVPGDEEVSLNPRARSA 294 Query: 310 KLR 312 ++R Sbjct: 295 RMR 297 >gi|254432433|ref|ZP_05046136.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001] gi|197626886|gb|EDY39445.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001] Length = 317 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 160/312 (51%), Gaps = 35/312 (11%) Query: 20 HVPVLLEKVIALLNPAP--------GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H PVL + V+A P G +++D T G GG+S + +I LD+DP Sbjct: 24 HQPVLADAVLASFAPVETLLAEHSGGGLLIDCTLGGGGHSALLLEAHPGLRLIGLDQDPS 83 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + E + + ++ ++ F+ D+ P + V+ DLGVSS Q+D RGFSF+ Sbjct: 84 ARTAAAERLAPFGDRVTIVATNFA---DHRPSEPALAVLADLGVSSPQLDVAGRGFSFRA 140 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK---RRQSAPF 185 GPLDMRM+ G +A+ ++++ L ++ GEE+ + RIA I + A Sbjct: 141 EGPLDMRMNPEAGETAAALLDRLEEGALADLIYGYGEERLSRRIARRIKEQGPWNDPARP 200 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L+ L+ + + R+HPATR+FQALRI VN+E+ L + L L+ GGL Sbjct: 201 RTTAELAWLVGGCYPPAARRGRLHPATRTFQALRIAVNDELGVLGRWLEQVPDWLRPGGL 260 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDRLVK F + +T+K +V E+ N Sbjct: 261 LGVISFHSLEDRLVKTAF-----------------LRDERLERVTRKPLVAAAEEAEANP 303 Query: 305 RSRSAKLRAGMR 316 RSRSAK R R Sbjct: 304 RSRSAKFRVARR 315 >gi|315453816|ref|YP_004074086.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter felis ATCC 49179] gi|315132868|emb|CBY83496.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter felis ATCC 49179] Length = 288 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 30/305 (9%) Query: 19 DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H VLL++VI P A +++D T G GG+S + + ++ I +DRD A S Sbjct: 1 MHQSVLLQEVIQAFAPLAQARDPLLIDCTLGLGGHSLTLLQTYPHLRIIGIDRDLEASSI 60 Query: 74 GQETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + +F+ T++ QL D + GV+ DLGVSS+Q+D RGF F Sbjct: 61 AEQRLALHASRFTYRYGTYAEVIAQLIDEGIWQNCHGVLADLGVSSLQLDNPSRGFGFAS 120 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 + + + A V+N ++ DL ++L GE + A +IAH IV RR FQ+ Sbjct: 121 HTLDMRMDTQASLDAFKVINHYSLYDLEQVL-EKGEVRGAKKIAHLIVNRRHKCLFQSGM 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ + + + HPAT FQA+R+ VN EI+ L L + L ++S Sbjct: 180 ELAEFLSQ---HLRRTHHHPATLVFQAVRMEVNAEIQNLRALLEYS--KQLQNAHLAIIS 234 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F + ++KK + P ++++ N RSRSA Sbjct: 235 FHSLEDREVKHTFKEYAKSYGVC---------------LSKKPITPCKQEIQDNPRSRSA 279 Query: 310 KLRAG 314 K+R Sbjct: 280 KMRIF 284 >gi|260438648|ref|ZP_05792464.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] gi|292809242|gb|EFF68447.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] Length = 346 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 29/317 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+P+++E+++ +L PG V LDAT G GG+S + ++ +LD DP Sbjct: 45 STPAGMHIPIMVEEILDVLKVQPGDVGLDATLGYGGHSGKILEKLKGSGHLYSLDIDPIE 104 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ +RD + F++ + F + + D ++ DLGVSSMQID +RGFS Sbjct: 105 IVRTEKRLRDKGFSEDVFTVIRTNFKNIDEVSGTAGKFDFLMADLGVSSMQIDNPERGFS 164 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184 ++ GPLD+R+ G AS+ + + + T +L +E A IA + + Sbjct: 165 YKNEGPLDLRLDPSKGEPASERLKKLTKDEFTGMLIENSDEPYAKEIATEVFNEFRKKKE 224 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT DL I+K + F + R+FQALRI VN+E E L + L+ + Sbjct: 225 INTTTDLYKAIEKALSFIPEKERKDAVKKSSQRTFQALRIDVNSEFEVLEEFLQKLPDVM 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS EDRLVK++F M R + S V+ P+ + Sbjct: 285 KEGGRIAILTFHSGEDRLVKQYFK------MYKRDGVLSEISD---------VIRPSAAE 329 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS KLR +R Sbjct: 330 CARNGRARSTKLRWAVR 346 >gi|116329171|ref|YP_798891.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283047|sp|Q04Y87|RSMH_LEPBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116121915|gb|ABJ79958.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 316 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 105/288 (36%), Positives = 154/288 (53%), Gaps = 23/288 (7%) Query: 40 ILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 LD T G GG+S F K S VI DRDP +S + D+KE+ Q FS++ Sbjct: 29 FLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEIDS 88 Query: 98 -----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 + + G++ DLG+S+ + RGFSF+++ PLDMR++ + GI+A DV+N Sbjct: 89 NLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINTY 148 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPA 210 + L I GEE+ + +IA IV+RR+ T +L+ LI K + HPA Sbjct: 149 SKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHPA 208 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 TR FQALRI VN E+ + +GL S L+ G++ V+SFHSLEDR+VK + + Sbjct: 209 TRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYA---- 264 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F+ +TKK ++P++E+ N SRSAKLR +T Sbjct: 265 ----------KQNGFELLTKKPILPSEEETKENPASRSAKLRVLRKTK 302 >gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase [Acromyrmex echinatior] Length = 325 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 115/325 (35%), Positives = 170/325 (52%), Gaps = 30/325 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 + ++V+ + P+PGK +D TFGAGG++ + + ALDRDP C ++ + Y Sbjct: 1 MAQEVLTYIAPSPGKTYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRY 60 Query: 82 KEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS+L + + +DG++FD G SSMQ D RGFS K GPLDMR Sbjct: 61 PGQVIPLLGKFSELPQLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMR 120 Query: 137 MSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQTTQDL 191 M A++V+ +A +DLTRI+ + G+EK+A +IA I R +TT++L Sbjct: 121 MDGFRCPKQLTAANVLERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKEL 180 Query: 192 SSLIQKTVYFSKNN-----RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T+ H AT++FQALRIFVNNE+ E+ G+ A+ LK G LI Sbjct: 181 AQLIESTLDGEIRRDSLGRFSHSATKTFQALRIFVNNELNEINYGILLAQIYLKLSGCLI 240 Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +SFHSLED +VK+ + + ++ + K V+ Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKIPWKMMHKHVL 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 +PT E++ N RSRSAKLRA M+ Sbjct: 301 IPTAEEIETNPRSRSAKLRAIMKVK 325 >gi|224542006|ref|ZP_03682545.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM 15897] gi|224525063|gb|EEF94168.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM 15897] Length = 348 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ +++++++ L+ PG++ LD T G GG+S + ++ LD D Sbjct: 44 STPAGMHISIMVDEILEFLDIQPGQIGLDCTLGYGGHSSKMMEKLEGQGHLYGLDIDTIE 103 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + E +R+ + F+ F + D V+ DLGVSSMQID +RGFS Sbjct: 104 IEKTTERLRNKGYGEDIFTPILTNFRNIDQVSEKYGPFDFVLADLGVSSMQIDNPERGFS 163 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 ++K+GPLD+R++ G A +++ + ++L IL +E A +A I +S Sbjct: 164 YKKNGPLDLRLNPKAGRPAYEILKDLSREELEHILTENSDEPYADILAKNIYSFIRSGME 223 Query: 185 FQTTQDLSSLIQKTVYF--SKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TTQ L +I KT+ F KN + A R FQALRI VN E E L + L Sbjct: 224 VETTQQLYKIIDKTLSFVTDKNRKDIVNKTAARVFQALRIEVNQEFEVLYDFVEKLPLIL 283 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG +++FHS EDR+VKK F +++ + + V+ P++E+ Sbjct: 284 KPGGKAAILTFHSGEDRIVKKSFKELKNLG--------------IYEDVCRNVIRPSREE 329 Query: 300 VAFNRRSRSAKLRAGMR 316 N R++S K+R ++ Sbjct: 330 CHRNSRAKSTKMRWAIK 346 >gi|291519694|emb|CBK74915.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4] Length = 347 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 92/317 (29%), Positives = 147/317 (46%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ +++++++ L PG+ LD T G GG++R + + LD DP Sbjct: 44 STPAGMHISIMVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLEQLQGQGCIYGLDVDPIE 103 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 E +R + + F F+ + + D V+ DLGVSSMQID +RGFS Sbjct: 104 SKKTVERLRGFGFGEDNFQFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDNPERGFS 163 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184 ++ GPLD+R+ G SA++ ++ ++ ++ +E A IAH + + P Sbjct: 164 YKIDGPLDLRLDPEHGESAAERLHNITEEEFIGMMVENSDEPYAEEIAHKVFTLMAKGNP 223 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L I + ++ R FQALRI VN+E E L L L Sbjct: 224 MDTTTALREAISEALWKVPKEEKEQAIKKSCARVFQALRIDVNSEFEVLYTFLEKLPGIL 283 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS EDRLVKK F + + + ++ VV P+ E+ Sbjct: 284 KPGGRVAILTFHSGEDRLVKKSFKELAKEGVYSE--------------VSSDVVRPSAEE 329 Query: 300 VAFNRRSRSAKLRAGMR 316 N RS+S K+R ++ Sbjct: 330 CRINPRSKSTKMRWAVK 346 >gi|116330221|ref|YP_799939.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282016|sp|Q04V89|RSMH_LEPBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116123910|gb|ABJ75181.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 316 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 105/288 (36%), Positives = 154/288 (53%), Gaps = 23/288 (7%) Query: 40 ILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 LD T G GG+S F K S VI DRDP +S + D+KE+ Q FS++ Sbjct: 29 FLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEIDS 88 Query: 98 -----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 + + G++ DLG+S+ + RGFSF+++ PLDMR++ + GI+A DV+N Sbjct: 89 NLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINTY 148 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPA 210 + L I GEE+ + +IA IV+RR+ T +L+ LI K + HPA Sbjct: 149 SKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHPA 208 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 TR FQALRI VN E+ + +GL S L+ G++ V+SFHSLEDR+VK + + Sbjct: 209 TRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYA---- 264 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F+ +TKK ++P++E+ N SRSAKLR +T Sbjct: 265 ----------KQNGFELLTKKPILPSEEETKENPASRSAKLRVLRKTK 302 >gi|224029029|gb|ACN33590.1| unknown [Zea mays] Length = 436 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 117/349 (33%), Positives = 158/349 (45%), Gaps = 51/349 (14%) Query: 20 HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDP------- 68 H+PVLL +V+A P P + +D T GA G+S + + + I +D DP Sbjct: 88 HIPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALGIGH 147 Query: 69 ---FAVSCGQETMRDYKE---------------QFSLFQATFSQLQD--YVPDKGVDGVV 108 A G+E + E F + S + + V GVDG++ Sbjct: 148 GHIEAFLAGREREANGGEDDALLGTLRAYTHVKNFKYIKQVLSSVDESLVVGSSGVDGIL 207 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 DLG+SSMQ++ +RGFS + GPLDMRM A D++N +L RIL GEE Sbjct: 208 IDLGMSSMQVNKSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPELELGRILREYGEES 267 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSL--IQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 + IVK R +T DL L T+ + I +TR FQALRI VN+E+ Sbjct: 268 NWQSVQKQIVKARSVGGLHSTGDLVKLIQRMCTISSGRQGWIKTSTRVFQALRIAVNDEL 327 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF---------ASRSGKVMAVRHMI 276 L L S L GG L V+SFHSLEDR+VKK F K I Sbjct: 328 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEANEEDDKDDQALTDI 387 Query: 277 PSNAHPAVFQS--------ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 P Q +TK+ + P+QE+ N+R RSAKLR +T Sbjct: 388 EDGDEPWSGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKT 436 >gi|226322767|ref|ZP_03798285.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758] gi|225208748|gb|EEG91102.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758] Length = 356 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 165/318 (51%), Gaps = 29/318 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ L PG+V DAT G GG++++ + ++ A D DP Sbjct: 51 NTPAGMHISIMVQEILDFLKIQPGEVGFDATLGYGGHTKAMLQCLEGKGHIYATDVDPEE 110 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 111 SAKTKKRLEEQGFGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 170 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ ++ + ++L +L +E +A AI + R+ Sbjct: 171 FKVDGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITEEIRKGHR 230 Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L +I++T+ F N+ R+FQALRI VN+E E L + + A Sbjct: 231 IDTTTKLRQVIEQTLSFLPENKEKKDIIRKTCQRTFQALRIDVNHEFEVLYEFMEKLPGA 290 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK GG + +++FHS ED+LVKK + + + + K VV P+ E Sbjct: 291 LKPGGRVAILTFHSGEDKLVKKALKAGYREGVYSEYA--------------KDVVRPSAE 336 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N R+RS K+R ++ Sbjct: 337 ECAQNGRARSTKMRWAVK 354 >gi|242060440|ref|XP_002451509.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor] gi|241931340|gb|EES04485.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor] Length = 445 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 113/349 (32%), Positives = 160/349 (45%), Gaps = 52/349 (14%) Query: 20 HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 HVPVLL +V+A P P + +D T GA G+S + + + I +D DP A+ G+ Sbjct: 96 HVPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALEIGR 155 Query: 76 ------------ETMRDYKEQFSLFQATFSQLQDYVPDKGV---------------DGVV 108 E ++ ++ ++++ K V DG++ Sbjct: 156 GHIETFLAGREREANGREEDVLQETLRAYTHVKNFKYIKQVLGSVDESLAVGSSGVDGIL 215 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 DLG+SSMQ++ +RGFS + GPLDMRM A D++N +L RIL GEE Sbjct: 216 IDLGMSSMQVNRSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPEIELGRILREYGEES 275 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSL--IQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 + IVK R + +T DL L ++ + I ATR FQALRI VN+E+ Sbjct: 276 NWQSVQKQIVKARATGGLHSTGDLVKLIQRMCSISSGRQGWIKTATRVFQALRIAVNDEL 335 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM---------- 275 L L S L GG L V+SFHSLEDR+VKK F A Sbjct: 336 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEADDEEDDKDDLALTD 395 Query: 276 IPSNAHPAVFQS--------ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I + P Q +TK+ + P+QE+ N+R RSAKLR + Sbjct: 396 IVNEDEPWFGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQK 444 >gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Harpegnathos saltator] Length = 325 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 172/325 (52%), Gaps = 30/325 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 + ++V++ + P+PGK +D TFGAGG++ + + ALDRD A Q+ + Y Sbjct: 1 MAQEVLSYIEPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKY 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS+L + +DG +FD G SSMQ D G RGFS K GPLDMR Sbjct: 61 PGQVIPLLGKFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMR 120 Query: 137 MSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191 M S A+DV+ +A +DL RI+ G+EK+A +IA AI++ R +TT++L Sbjct: 121 MDGFRCSGQPTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTREL 180 Query: 192 SSLIQKTVYFSKNN-----RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T+ H AT++FQALRIFVNNE+ E+ + A LK G LI Sbjct: 181 AELIESTLSDEIRKDNLGRFSHNATKTFQALRIFVNNELNEINYAMLLARIYLKVTGRLI 240 Query: 247 VVSFHSLEDRLVKKFFASR---------SGKVMAVRHMIPSNA----HPAVFQSITKKVV 293 +SFHSLED +VK+ + S K + +N ++ + K V+ Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANELEMLTQTPWKMMHKHVL 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 +PT E++ N R+RSAK RA ++ Sbjct: 301 LPTAEEIETNPRARSAKFRAILKVK 325 >gi|302669504|ref|YP_003829464.1| S-adenosyl-methyltransferase MraW family protein [Butyrivibrio proteoclasticus B316] gi|302393977|gb|ADL32882.1| S-adenosyl-methyltransferase MraW family [Butyrivibrio proteoclasticus B316] Length = 347 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ +++++++ +L PG+ LD T G GG++R + + LD DP Sbjct: 44 STPAGMHISIMVKEILEVLKIQPGEQGLDCTLGYGGHTRKMLEQLTGKGCIYGLDVDPIE 103 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + E +R+ F F+ + + D V+ DLGVSSMQID RGFS Sbjct: 104 SAKTVERLRNAGFDENAFKFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDDPKRGFS 163 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAP 184 ++ GPLD+R+ G SA++ ++ + +L +E A IA + ++ P Sbjct: 164 YKIDGPLDLRLDPEHGESAAERLHNITRDEFVGMLVENSDEPYAEEIADKVFNLMKKGDP 223 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L S I+ ++ R FQALRI VN+E E L L L Sbjct: 224 MDTTTALRSAIENALWKLPKEEKDQAIKKSCARVFQALRIDVNSEFEVLYSFLEKLPGIL 283 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 G + +++FHS EDRLVKK F +F I++ V+ P+ E+ Sbjct: 284 NPGARVAILTFHSGEDRLVKKAFKE--------------CKKAGLFSEISEDVIRPSAEE 329 Query: 300 VAFNRRSRSAKLRAGMR 316 N RS+S K+R ++ Sbjct: 330 CRVNPRSKSTKMRWAIK 346 >gi|325973262|ref|YP_004250326.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois] gi|323651864|gb|ADX97946.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois] Length = 304 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+PV+L +V + + +D TFG GG+S+ F K +I +D DP + + Sbjct: 1 MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKEFLKSLGVNSRLIGMDVDPKVIPYAE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131 E + +FS ++ +++Y DG++FDLG+S++Q+ +R FS+ S Sbjct: 61 E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 L++R G S +++N K L I G +A R+ I++ R++ P L Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVNQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+++ +K +P FQ+LRI NNE+ + LR A + LK G L++++F Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFQ 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED +V ++ S + P F + ++P++ ++ N SRSA+L Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAEL 296 Query: 312 RAGMRTVE 319 +T E Sbjct: 297 WVFTKTRE 304 >gi|239624706|ref|ZP_04667737.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium 1_7_47_FAA] gi|239521092|gb|EEQ60958.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium 1_7_47FAA] Length = 362 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 161/318 (50%), Gaps = 28/318 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+ +++++++ L PG+ LDAT G GG+++ K ++ ALD D Sbjct: 59 STPVGMHISIMVKEILDFLEIQPGQTGLDATLGYGGHTQEMLKCLQGQGHLHALDVDTIE 118 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ +E + E ++ Q F+ + + D V+ DLGVSSMQID +RGFS Sbjct: 119 MAKTRERLGKLGYGLEILTIRQLNFADIDQLAAETGPFDFVLADLGVSSMQIDNPERGFS 178 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 F+K GPLD+R+ GI AS+ + + ++LT +L +E A I+ A+V R + Sbjct: 179 FKKDGPLDLRLDSSRGIPASERLRHISREELTGMLIENSDEPYAEEISRAVVNRIKRGDG 238 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L I++T+ F K R+FQALRI +N+E E L Q L L Sbjct: 239 IDTTTQLRETIEQTLSFIPESDRKEAVKKSCQRTFQALRIDINSEFEVLYQFLEKLPDVL 298 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + V++FHS EDR+VKK F + + I V+ P+ E+ Sbjct: 299 AKGGRVAVLTFHSGEDRIVKKSFKDLYRQGVYSE--------------IAGDVIRPSAEE 344 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N R+RS K+R +++ Sbjct: 345 CSMNSRARSTKMRWAIKS 362 >gi|266625237|ref|ZP_06118172.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] gi|288862867|gb|EFC95165.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] Length = 349 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 154/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + + +++ L PG+ LDAT G GG++R K ++ ALD DP Sbjct: 46 STPAGMHLSICVREILDFLQIKPGQKGLDATLGYGGHTREMLKCLQSQGHLYALDVDPIE 105 Query: 71 VSCGQETMRDY---KEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ +E ++ E ++ Q F+ + + D V+ DLGVSSMQID DRGFS Sbjct: 106 LAKTRERLQSQGFGPEILTIIQENFANIDRVAAEVGPFDFVLADLGVSSMQIDNPDRGFS 165 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 ++ GPLD+R++ GI+A++ + ++L +L +E A IA + + R+ P Sbjct: 166 YKTEGPLDLRLNPEKGITAAERLQTIEEEELRGMLLENADEPYAEEIARAVVQEIRRGNP 225 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+K + K R+FQALRI VN+E E L L L Sbjct: 226 IDTTTRLRQVIEKALSRVPAADRKEAVKKSCQRTFQALRIDVNSEFEVLYSFLEKLPDVL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + V++FHS EDRLVKK F + + V+ P+ E+ Sbjct: 286 APGGRVAVLTFHSGEDRLVKKSFKRLKKEGVYSEIADE--------------VIRPSAEE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 332 CLRNGRARSTKMRWAVK 348 >gi|123965435|ref|YP_001010516.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|262824968|sp|A2BUE8|RSMH_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123199801|gb|ABM71409.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 300 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 30/312 (9%) Query: 14 HHTIGDHVPVLLEKVIALLN----PAPGK-VILDATFGAGGYSRSFCKMGSNV--IALDR 66 + ++ +H V+ ++++ ++ + K +DAT G GG+S K ++ I LD Sbjct: 7 NSSLFNHKSVMTDEILYSIDQYPFISDNKLTAIDATLGGGGHSYQLLKKYPDLKIIGLDH 66 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + ++K + + + FS + P + V V+ DLGV+S QID +RGFS Sbjct: 67 DPIARESALNKLEEFKSRIEIIPSNFSN---FEPKEKVSFVIADLGVNSNQIDSPERGFS 123 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 FQK GPLDMRM+ ++A +++ + KDL ++ G+E+ + +I+ I K + Sbjct: 124 FQKDGPLDMRMNPLIKMNAENLIETLSEKDLADLIFKFGDERLSRKISRKIKKDLKEKGK 183 Query: 186 Q--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T S+ + +IHPATR+FQALRI VNNEIE L + L+ A L GG Sbjct: 184 YSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNNEIEALEKFLKIAPDWLLTGG 243 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++ ++SFHS+EDRLVK F +++TKK + P ++++ N Sbjct: 244 IISIISFHSIEDRLVKNSFKG-----------------DYRLKNLTKKPITPNKKEIENN 286 Query: 304 RRSRSAKLRAGM 315 +RSRSAKLR Sbjct: 287 KRSRSAKLRIAQ 298 >gi|302387032|ref|YP_003822854.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] gi|302197660|gb|ADL05231.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] Length = 349 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 157/318 (49%), Gaps = 28/318 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H + +++++ L PG+ LDAT G GG++ K ++ A D D Sbjct: 46 NTPAGMHRSICVKEILDFLQITPGQTGLDATLGYGGHTLEMLKCLNSKGHLYATDVDSIE 105 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFS 126 + +E + E ++ Q FS + + G + ++ DLGVSSMQID +RGFS Sbjct: 106 LPRTRERLEHLGYGSEILTIRQTNFSNIDQITSESGPLNFILADLGVSSMQIDNPERGFS 165 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 F+ GPLD+R++ GISA+D + + ++L +L +E A+ IA AIV + Sbjct: 166 FKTEGPLDLRLNPSKGISAADRLKTISQEELHGMLLENADEPHAAEIAGAIVTAIKKGTD 225 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +IQ + F RSFQALRI VNNE E L + L AL Sbjct: 226 ITTTSQLQQIIQDALKFIPEKERNNEIKKSCQRSFQALRIDVNNEFEVLYEFLEKLPAAL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHS EDRLVKK F V++ IT + + P+ + Sbjct: 286 AEGGRVAILTFHSGEDRLVKKSFQRF--------------YREGVYKEITPEAIRPSAAE 331 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N R+R AKLR +++ Sbjct: 332 CSSNSRARCAKLRWAIKS 349 >gi|33860731|ref|NP_892292.1| hypothetical protein PMM0171 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|42559450|sp|Q7V3B1|RSMH_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33633673|emb|CAE18630.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 300 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 107/318 (33%), Positives = 162/318 (50%), Gaps = 31/318 (9%) Query: 9 MSSAIHHTI-GDHVPVLLEKVIAL-----LNPAPGKVILDATFGAGGYSRSFCKMGSNV- 61 M + + + +H V+ ++++ L +DAT G GG+S K ++ Sbjct: 1 MQTDLSDSSLFNHKSVMTDEILVSVDQYPLISDNKLTAIDATLGGGGHSYQLLKKYPDLK 60 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 I LD DPFA + ++K + + + F+ + P + V V+ DLGV+S QID Sbjct: 61 IIGLDHDPFARQSAFIKLEEFKSRIEICPSNFAN---FEPKEKVSFVIADLGVNSNQIDN 117 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSFQK GPLDMRM+ ++A D++ N KDL ++ G+E+ + +I+ I K Sbjct: 118 PQRGFSFQKDGPLDMRMNPLLEMNAEDLIETLNEKDLADLIFKFGDERLSRKISRRIKKD 177 Query: 180 RQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 Q T S+ + +IHPATR+FQALRI VN EIE L + L A Sbjct: 178 LQEKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNKEIEALERFLELAPN 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG++ ++SFHS+EDRLVK F +++TKK + P + Sbjct: 238 WLLPGGIISIISFHSIEDRLVKNSFKGDE-----------------RLKNLTKKPITPNE 280 Query: 298 EDVAFNRRSRSAKLRAGM 315 +++ N+RSRSAKLR Sbjct: 281 KEIENNKRSRSAKLRIAQ 298 >gi|262195180|ref|YP_003266389.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365] gi|262078527|gb|ACY14496.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365] Length = 319 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 104/323 (32%), Positives = 167/323 (51%), Gaps = 35/323 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILD---------------ATFGAGGYSRSFCKMGSNVIAL 64 H+PVL E+V+A ++P PG V D A + + Sbjct: 9 HLPVLKEEVLAHMSPRPGGVYCDGTLGGGGHAGAVLARA------------NPDGRLYGI 56 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 DRD A++ Q + D+ E+ + T+ + + + +DG++ D+G SS Q D Sbjct: 57 DRDATALAAAQRALADFGERVQFLRGTYGYADELLAEAGAPPLDGILLDIGPSSPQFDRA 116 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GP+DMRM SG +A D++ + +L IL GEE+ + RIA I Sbjct: 117 ERGFSFLRPGPIDMRMDQSSGETALDLMRRLGPGELADILWSFGEERFSKRIAARIKDAV 176 Query: 181 QSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + +TT DL++L++ + + + HPAT++FQALRI VN E+++LA+ LR Sbjct: 177 RDHRLETTTDLAALVEDAIPASVRRQMKTHPATKTFQALRIAVNGELDQLARFLRVFPPL 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPT 296 L GG +++SFHSLEDRLVK+ F + + + V +T+K V + Sbjct: 237 LAPGGRCVIISFHSLEDRLVKRAFRDLAWSSRLPPDLARAAGERIEPVCVPVTRKAVFAS 296 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++++A N R+RSA+LRA + Sbjct: 297 EDEIASNPRARSARLRACEKVAA 319 >gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group] gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group] gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group] gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group] gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group] Length = 436 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 162/349 (46%), Gaps = 47/349 (13%) Query: 15 HTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFA 70 H+ +HVPV+L +V+A P P + +D T GA G+S + + + I +D DP A Sbjct: 87 HSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSA 146 Query: 71 VSCGQETMRD-----------------------YKEQFSLFQATFSQLQD--YVPDKGVD 105 + G+ + + + F + + + V GVD Sbjct: 147 LEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206 Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILG 164 G++ DLG+SSMQ++ DRGFS + GPLDMRM A D++N ++ RIL G Sbjct: 207 GILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLEVGRILRDYG 266 Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVN 222 EE + IVK R +T +L LIQ+T S + I ATR FQALRI VN Sbjct: 267 EESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRVFQALRIAVN 326 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI------ 276 +E+ L L + L G L V+SFHSLEDR+VK+ F + Sbjct: 327 DELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSAD 386 Query: 277 PSNAHPAVFQ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + F+ +TK+ + P+QE+ N+R RSAKLR + Sbjct: 387 IDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 435 >gi|160940252|ref|ZP_02087597.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC BAA-613] gi|158436832|gb|EDP14599.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC BAA-613] Length = 367 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 28/320 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+P+++ +++ L PG+ LDAT G GG++ + ++ ALD D Sbjct: 59 STPVGMHIPIMVNEILEFLQIQPGQTGLDATLGYGGHTSRMLERLESKGHIYALDVDSIE 118 Query: 71 VSCGQETMRDY---KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFS 126 + ++ + E ++ + F+ + + G D V+ DLGVSSMQID RGFS Sbjct: 119 MEKTRQRLEHMGYGPEILTIRKLNFANIDQIAGEFGPLDFVLADLGVSSMQIDNPSRGFS 178 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAP 184 F+K GPLD+R+ G AS+ + ++LT +L +E A IA + + ++ Sbjct: 179 FKKEGPLDLRLDPLKGEPASERLKGLTQEELTGMLMENSDEPYAEEIARTVMGEIKRGRE 238 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L ++ + + F K R+FQALRI VN+E E L + L L Sbjct: 239 VATTTRLYEMVDRALAFIPEEERKEAVKKSCQRTFQALRIDVNSEFEVLYEFLDKLPGVL 298 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG +++FHS EDR+VKK F + + + V+ P+ E+ Sbjct: 299 KPGGRAAILTFHSGEDRIVKKSFKEMYRAGLYSQ--------------VAGDVIRPSAEE 344 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 N R+ S K+R ++ + Sbjct: 345 CRMNSRAHSTKMRWAIKAED 364 >gi|325182849|emb|CCA17304.1| SadenosylLmethioninedependent methyltransferase mraWlike protein putative [Albugo laibachii Nc14] Length = 365 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 167/334 (50%), Gaps = 36/334 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 HVPVL++ V LL KV +DAT G G+++ + N+ + +DRDP +S Sbjct: 30 YHVPVLIKSVTKLLVSEEMKVPRYFVDATVGCAGHAQKILESDPNIRMLCIDRDPEVLSI 89 Query: 74 GQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++ + + +++ L+++ V G++ DLGV+S+ D +RGFS+ + Sbjct: 90 ATDNLKKFTSRVKFVNGSYADLENHLKVSGFPSEVSGILVDLGVNSLHYDKPERGFSWLR 149 Query: 130 SGPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---- 182 GPL+MR S + +D++ ++ +LTRI GE K A A AIV++R++ Sbjct: 150 DGPLNMRFDESDSTIDCAADILQTSSEVELTRIFREYGELKCAKEYAKAIVRKRETAAPG 209 Query: 183 -APFQTTQDLSSLIQKTVYFSKNNRIHPA--------------TRSFQALRIFVNNEIEE 227 F+TT L I++ + R+ P+ T FQALRI VN E+ Sbjct: 210 SRAFETTFHLRDAIEEVAAKWRPKRLSPSHASKTNRSSLARPITGCFQALRIQVNKELAH 269 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-----HP 282 + +G+ L G L+ ++FHSLEDR +K+ F + + ++ + Sbjct: 270 VHEGVPVLANHLTPGARLVTIAFHSLEDRPIKQIFRTLAHELKDGQLDSLQCDLSKSLRG 329 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F+ I KKVV P +E+V N RSRSA+LR R Sbjct: 330 KTFRFINKKVVKPCREEVVENPRSRSARLRCLER 363 >gi|167745358|ref|ZP_02417485.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662] gi|167655079|gb|EDR99208.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662] Length = 367 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 155/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD D Sbjct: 64 STPAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIE 123 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + E ++ Q F+ + + D V+ DLGVSSMQID DRGFS Sbjct: 124 LEKTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFS 183 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 ++ GPLD+R++ G+SA++ + ++L +L +E A IA + K ++ Sbjct: 184 YKTEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGTA 243 Query: 185 FQTTQDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++ + + K R+FQALRI VN+E E L + L L Sbjct: 244 IDTTTKLREVIEEALEFLPEHEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVL 303 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG +++FHS EDRLVKK F V+Q I+ V+ P+ E+ Sbjct: 304 AKGGRAAILTFHSGEDRLVKKSFKRL--------------LREGVYQEISTDVIRPSAEE 349 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 350 CRMNSRARSTKMRWAIK 366 >gi|198282533|ref|YP_002218854.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665162|ref|YP_002424723.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 23270] gi|263433385|sp|B5ELD1|RSMH_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433699|sp|B7J3W0|RSMH_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|198247054|gb|ACH82647.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517375|gb|ACK77961.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 23270] Length = 321 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 175/325 (53%), Gaps = 15/325 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA-PGK---VILDATFGAGGYSRSFCKMG---SNV 61 M SA + HV VLL + I L PA +DAT G GG+S + + Sbjct: 1 MRSA-NEPDATHVAVLLAETIVALRPALHTGAAVRCVDATGGRGGHSAALLAELGAADTL 59 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118 + LDRDP A++ + + + QA FSQL + + + VD ++ DLGVSS Q+ Sbjct: 60 LILDRDPSAIAALRARFAQ-DSRVYIRQARFSQLAEVLAALEWERVDAILADLGVSSPQL 118 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D RGFSF + GPLDMRM + SA++ + A D+TR+L GEE+ A IA AI+ Sbjct: 119 DEAARGFSFLRDGPLDMRMDPGADRSAAEWLATATEADMTRVLREYGEERFARPIARAIL 178 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R+ AP T L+ LI + + + + HPATRSFQ +RIF+N E+EEL L A Sbjct: 179 RAREQAPITRTLQLAELIAQVLPRHETGQ-HPATRSFQGIRIFINRELEELEAFLPQAMN 237 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL+AGG L V+SFHSLEDRLVK+FF + ++ A + S P + K + Sbjct: 238 ALRAGGRLAVISFHSLEDRLVKRFFRADDYRISADVPLRASELPPLPWHP-AGKALRAGP 296 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSI 322 + N RSRSA LR R+ + Sbjct: 297 RETRDNPRSRSAVLRVAERSERHAA 321 >gi|291539383|emb|CBL12494.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis XB6B4] Length = 350 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 162/317 (51%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ LN PG+ DAT G GG++++ ++ A D DP Sbjct: 47 NTPAGMHISIMVQEILDTLNIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ ++ ++L +L +E +A AI + R+ + Sbjct: 167 FKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSR 226 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+KT+ F K+ R+FQALRI VN E E L + + AL Sbjct: 227 IDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDAL 286 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS ED+LVKK + + +K VV P+ ++ Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKEGCRAGIYADY--------------SKDVVRPSAQE 332 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 333 CAQNGRARSTKMRWAVR 349 >gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] gi|263433292|sp|A6TUM7|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] Length = 349 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 152/317 (47%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H + + +++ L PG+ LDAT G GG++ K ++ A+D D Sbjct: 46 STPAGMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRLNSKGHLYAIDVDSIE 105 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFS 126 + QE + E ++ Q FS + + G + V+ DLGVSSMQID +RGFS Sbjct: 106 LPRTQERLEGLGYGSEILTIKQMNFSNIDQIALESGPLNFVLADLGVSSMQIDNPERGFS 165 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 F+ GPLD+R++ + GISA+ + + +L +L +E ++ I+ I + ++ Sbjct: 166 FKSEGPLDLRLNPNRGISAAARLKTISQDELQGMLLENADEPNSAAISRAIISEIKKGID 225 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+ + F N R FQALRI VN+E E L + L L Sbjct: 226 ISTTTQLQQIIKDALKFIPQNTRKDEIKKSCQRCFQALRIDVNDEFEMLYEFLEKLPATL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + ++SFHS EDRLVKK F V++ I + P+ E+ Sbjct: 286 AEGGRVAILSFHSGEDRLVKKSFQRF--------------FREGVYREIAPNFIRPSTEE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RSAKLR ++ Sbjct: 332 CNTNGRARSAKLRWAIK 348 >gi|291523776|emb|CBK89363.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629] Length = 349 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ A D DP Sbjct: 45 NTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIE 104 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ + + + ++ F + + + G D ++ DLGVSSMQID +RGFS Sbjct: 105 SEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFS 164 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ + GISA++ ++ + ++L+ +L +E +A AI + R+ Sbjct: 165 FKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNR 224 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++T+ F K+ R+FQALRI VN+E E L + + AL Sbjct: 225 IDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG +++FHS ED+LVKK + + + +K V+ P+ ++ Sbjct: 285 KPGGRAAILTFHSGEDKLVKKALKAGYKAGIYSDY--------------SKDVIRPSAQE 330 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 331 CAQNGRARSTKMRWAVR 347 >gi|312601353|gb|ADQ90608.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma hyopneumoniae 168] Length = 291 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 148/295 (50%), Gaps = 16/295 (5%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81 +LE++I L P +D T G GG+S + + ++ D+D A+ + + Sbjct: 1 MLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPKLLAL 60 Query: 82 KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 K+ + + FS+ Y+ + + VDG + DLGVSS QID +RGFS+ K G LDMRM Sbjct: 61 KQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLDMRMD 120 Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S SA V+N+ + L I G+ A IA AI+ R P +TT +L +L++K Sbjct: 121 KSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVNLVKK 177 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + + FQA+RI VNNE++ L + L K LK G + +++FHSLEDR+ Sbjct: 178 VIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHSLEDRI 237 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 VKK F K F KV P ++ N R++SAKLR Sbjct: 238 VKKAFLDLIRKDKLE----FFQKGLPKFSM---KVFRPKANELKSNPRAKSAKLR 285 >gi|309804817|ref|ZP_07698881.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 09V1-c] gi|309806276|ref|ZP_07700289.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 03V1-b] gi|308165927|gb|EFO68146.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 09V1-c] gi|308167260|gb|EFO69426.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 03V1-b] Length = 280 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 13/262 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 3 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 63 AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182 Query: 184 PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFAS 264 G + V++F SLED++VKK+ + Sbjct: 243 GRICVITFQSLEDKIVKKYSKN 264 >gi|291528759|emb|CBK94345.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1] Length = 349 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ A D DP Sbjct: 45 NTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGHGHMFATDVDPIE 104 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ + + + ++ F + + + G D ++ DLGVSSMQID +RGFS Sbjct: 105 SEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFS 164 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ + GISA++ ++ + ++L+ +L +E +A AI + R+ Sbjct: 165 FKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNR 224 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++T+ F K+ R+FQALRI VN+E E L + + AL Sbjct: 225 IDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG +++FHS ED+LVKK + + + +K V+ P+ ++ Sbjct: 285 KPGGRAAILTFHSGEDKLVKKALKAGYKAGIYSDY--------------SKDVIRPSAQE 330 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 331 CAQNGRARSTKMRWAVR 347 >gi|309809920|ref|ZP_07703768.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 2503V10-D] gi|308169708|gb|EFO71753.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 2503V10-D] Length = 280 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 13/262 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ Sbjct: 3 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL 62 Query: 74 GQE-----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + K + SL F LQ G+DG+ +DLGVSS Q D +RG Sbjct: 63 AKKSFLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG 122 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R Sbjct: 123 FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK 182 Query: 184 PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK G Sbjct: 183 PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFAS 264 G + V++F SLED++VKK+ + Sbjct: 243 GRICVITFQSLEDKIVKKYSKN 264 >gi|317121700|ref|YP_004101703.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM 12885] gi|315591680|gb|ADU50976.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM 12885] Length = 342 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 117/326 (35%), Positives = 168/326 (51%), Gaps = 44/326 (13%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILD----------------ATFGAGGYSRSFC 55 A HVPVLL +V+A L P PG +D Sbjct: 38 ATAPDGAPHVPVLLREVVAYLAPRPGGRYVDGTVGAGGHAAAVLAAA------------- 84 Query: 56 KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLG 112 + ++ +DRDP A++ + + + L F L+ ++ D VDG++ DLG Sbjct: 85 GGEAELLGIDRDPAALALAARRLAPFGARVRLVHGNFRGLEQHLEDAGWDAVDGILLDLG 144 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQ+D RGFS+Q+ GPLDMRM S +A+D+VN A L R + GEE+ A R Sbjct: 145 VSSMQLDDPSRGFSYQEEGPLDMRMDPSQPVTAADLVNTAGRDQLARWIAEYGEERWAGR 204 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQ-KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA IV R+ P TT L +I+ ++ HPA R+FQALRI VN E++ L + Sbjct: 205 IADFIVAARRRRPITTTTQLVEIIKAAIPARARRRGGHPARRTFQALRIAVNGELDGLEE 264 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L+ A + L+ GG ++V++FHSLEDR VK+ F + + + A F+ +T+ Sbjct: 265 FLQQAARRLRPGGRMVVIAFHSLEDRAVKRAFRALAAP----------DGGAAPFRLLTR 314 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 + V P +E+ N RSRSAKLRA R Sbjct: 315 RPVTPGEEEAQANPRSRSAKLRAIER 340 >gi|240145398|ref|ZP_04743999.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] gi|257202523|gb|EEV00808.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] Length = 350 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 161/317 (50%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ L PG+ DAT G GG++++ ++ A D DP Sbjct: 47 NTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ ++ ++L +L +E +A AI + R+ + Sbjct: 167 FKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSR 226 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+KT+ F K+ R+FQALRI VN E E L + + AL Sbjct: 227 IDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDAL 286 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS ED+LVKK + + +K VV P+ ++ Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKEGCRAGIYADY--------------SKDVVRPSAQE 332 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 333 CAQNGRARSTKMRWAVR 349 >gi|260881478|ref|ZP_05404498.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] gi|260848533|gb|EEX68540.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] Length = 369 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 165/324 (50%), Gaps = 35/324 (10%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+P+++++++ +L PG+ DAT G GG++ + + ++ D DP Sbjct: 58 NTPAGTHIPIMVKEILEVLAIKPGERGFDATLGYGGHTLAMLEKLEGKGHLYGGDVDPIE 117 Query: 71 VSCGQETMRDY---KEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + +R + + Q F ++ + D V+ DLGVSSMQID +RGF+ Sbjct: 118 SEKTEARIRAKGFGPDIWERRQMNFCEIDKLAEEVGPFDFVLADLGVSSMQIDNPERGFT 177 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ GPLD+R++ GISA+D + Q + ++L ++ +E A IA IV+ + P Sbjct: 178 YKSDGPLDLRLNPQAGISAADRLRQLDYEELVGMMQENADEPYAEAIARQIVRAEKHRPI 237 Query: 186 QTTQDLSSLIQKT-------------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 +TT++L ++I+ + ++ + R FQALRI VN+E E L + + Sbjct: 238 RTTRELYAVIEAALEKVHLPRDAAGKIPDRRDVIRKSSARVFQALRIDVNHEYEVLYEFM 297 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 AL GG + +++FHS EDR+VKK F + +++ I ++V Sbjct: 298 EKLPYALAPGGRVAILTFHSGEDRIVKKAFKAF--------------HQQGIYRDIAREV 343 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + P++E+ N R+ S KLR +R Sbjct: 344 IRPSREECYENSRAHSTKLRWAIR 367 >gi|148828289|ref|YP_001293042.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG] gi|263456035|sp|A5UIQ3|RSMH_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148719531|gb|ABR00659.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG] Length = 289 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 156/291 (53%), Gaps = 16/291 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +SA T+ LS Q K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIFINSELDELESLLNSA 237 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L G L ++SFHSLEDR+VK F ++ + + +V + Sbjct: 238 LDMLAPEGRLSIISFHSLEDRMVKHFMKNKVRARIFPKVYHCEKIKFSVIK 288 >gi|225375865|ref|ZP_03753086.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM 16841] gi|225212300|gb|EEG94654.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM 16841] Length = 355 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 160/317 (50%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ +++ ++I L PG+ DAT G G++++ + ++ A D DP Sbjct: 51 STPAGMHISIMVREIIDFLQIKPGQTGFDATLGYSGHTKAMLECLKGQGHMYATDVDPIE 110 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + D + ++ F + + + G D V+ DLGVSSMQID DRGFS Sbjct: 111 SAKTKKRLADAGFGEDILTIRLQNFCTIDEIAKEAGGFDFVLADLGVSSMQIDNPDRGFS 170 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ + Q + +L +L +E A +A AI +R+ P Sbjct: 171 FKVDGPLDLRLNPEKGISAAERLAQIDEDELAGMLWENSDEPYAEELARAIVTERKHGKP 230 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++T+ F K+ R+FQALRI VNNE E L + + AL Sbjct: 231 IDTTTRLREVIEETLSFLPEKEKKDTVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGAL 290 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG +++FHS ED+LVKK + + I VV P+ E+ Sbjct: 291 KPGGRAAILTFHSGEDKLVKKALKQGYKEGVYSE--------------IANDVVRPSAEE 336 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 337 CAQNGRARSTKMRWAVR 353 >gi|291534831|emb|CBL07943.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis M50/1] Length = 350 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ L PG+ DAT G GG++++ ++ A D DP Sbjct: 47 NTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ ++ ++L +L +E +A AI + R+ Sbjct: 167 FKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGNR 226 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+KT+ F K+ R+FQALRI VN E E L + + AL Sbjct: 227 IDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDAL 286 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS ED+LVKK + + +K VV P+ ++ Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKEGYRAGIYADY--------------SKDVVRPSAQE 332 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 333 CAQNGRARSTKMRWAVR 349 >gi|166033390|ref|ZP_02236219.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC 27755] gi|166027747|gb|EDR46504.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC 27755] Length = 358 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 28/316 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 G H+ + +++++ L+ PG+ LDAT G GG++R + ++ LD DP Sbjct: 56 STPAGMHISICVQEILDFLDIKPGQHGLDATLGYGGHTRKMLEKLEGHGHIYGLDVDPIE 115 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ +RD + ++ F+ + + D V+ DLGVSSMQID +RGF+ Sbjct: 116 SEKTKKRLRDLGYGEDILTVKLCNFADIDKVAEEHGKFDFVLADLGVSSMQIDNPERGFT 175 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 ++ GPLD+RM+ G SA+ + + +++ +L +E A+ I ++ R+ Sbjct: 176 YKFDGPLDLRMNPQKGESAAQRLKSMDAEEIEGMLVENSDEPYAAEITEVLMNWRKHGKS 235 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT +L I++ + F K R+FQALRI VN E E L L + + Sbjct: 236 PETTTELKEAIEEALTFLPEKEKKEAVKKSCQRTFQALRIDVNQEFEVLYAFLDKLPQVM 295 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHS EDRLVK+ F + I K V+ P+ ++ Sbjct: 296 NPGGRIAILTFHSGEDRLVKRAFKEGKKAGIYSE--------------ICKDVIRPSAQE 341 Query: 300 VAFNRRSRSAKLRAGM 315 A N R++ K+R + Sbjct: 342 CARNPRAKCTKMRWAI 357 >gi|238922879|ref|YP_002936392.1| methyltransferase [Eubacterium rectale ATCC 33656] gi|263433286|sp|C4ZBW8|RSMH1_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|238874551|gb|ACR74258.1| methyltransferase [Eubacterium rectale ATCC 33656] Length = 349 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 166/317 (52%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ A D DP Sbjct: 45 NTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIE 104 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ + + + ++ F + + + G D ++ DLGVSSMQID +RGFS Sbjct: 105 SEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFS 164 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ + GISA++ ++ + ++L+ +L +E +A AI + R+ Sbjct: 165 FKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNR 224 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++T+ F K+ R+FQALRI VN+E E L + + AL Sbjct: 225 IGTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG +++FHS ED+LVKK + + + +K V+ P+ ++ Sbjct: 285 KPGGRAAILTFHSGEDKLVKKALKAGYKAGIYSDY--------------SKDVIRPSAQE 330 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 331 CAQNGRARSTKMRWAVR 347 >gi|256372032|ref|YP_003109856.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM 10331] gi|256008616|gb|ACU54183.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM 10331] Length = 319 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 170/312 (54%), Gaps = 12/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PV++ +V+ + P G+ +LD T G GG++ + G+ VI LDRDP A+ + Sbjct: 6 HLPVMVAEVVRAVEPQ-GRRVLDVTVGLGGHAAALLDAGAALVIGLDRDPEALHLAARRL 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + ++F + TF L V + +D V+ DLGVSS+Q+D RGFSF+ +GPLDMRM Sbjct: 65 EAFGDRFEPVRGTFRDLARVVGARRIDAVIADLGVSSLQLDHAQRGFSFRLAGPLDMRMD 124 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 SA+ ++ + LT +L GE +R + P T Q +++ Sbjct: 125 PEAPTSAASLLASLDEDGLTELLRR-GEVGPLAR--RYARAILAAMPTTTEQLAEVVVEA 181 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 T + R HPAT FQALR+ VN+E+ +L L +A +AL+ GG+L V+++HSLEDRL Sbjct: 182 TPPSRRTTRRHPATLVFQALRLAVNDELGQLTALLPAAFEALEVGGVLAVLTYHSLEDRL 241 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+FF P+ + +V + ++ VVP+ ++VA N R+RSA+LR + Sbjct: 242 VKRFFEVAERGG--APRTTPAGSWTSVLERRPRRGVVPSDDEVARNPRARSARLRVARKL 299 Query: 318 V----ERSIEDD 325 + E + Sbjct: 300 AVADLAPAWERE 311 >gi|291523548|emb|CBK81841.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7] Length = 352 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 154/314 (49%), Gaps = 28/314 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 G H+ +++++++ L PG+ LDAT G GG++ + + ++ ALD D ++ Sbjct: 53 GMHISIMVQEILDFLQIQPGQRGLDATLGYGGHTSAMLRCLNGEGHLTALDVDAIEMAKT 112 Query: 75 QETMRDY---KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +R+ + ++ + F+ + + D D ++ DLGVSSMQID DRGFS++ Sbjct: 113 EERLRNQGFGPDILTVRKINFANIDEVAEKDGKFDFILADLGVSSMQIDNPDRGFSYKYD 172 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQTT 188 GPLD+R+ G AS+ + + +L +E A+ IA + + ++ P TT Sbjct: 173 GPLDLRLDQTKGEPASERLKHVTRDEFEGMLIENSDEPYAAEIASVVMQELKKGHPVDTT 232 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L LI+K + K R+FQALRI VN+E E L L+ L GG Sbjct: 233 SKLRELIEKALVRVPAADRKEAVKKSCARTFQALRIDVNSEFEVLEAFLQKLPDVLNPGG 292 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHS EDRLVKK F + K V+ P+ E+ N Sbjct: 293 RVAVLTFHSGEDRLVKKSFKENVKAGIYSEAA--------------KDVIRPSAEECRCN 338 Query: 304 RRSRSAKLRAGMRT 317 R+ S KLR +R+ Sbjct: 339 SRAHSTKLRWAVRS 352 >gi|258654059|ref|YP_003203215.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM 44233] gi|258557284|gb|ACV80226.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM 44233] Length = 348 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 167/309 (54%), Gaps = 19/309 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPA-----PGK----VILDATFGAGGYSRSFCKMGSNV--IA 63 H+PVL+++V LL PA V++DAT G GG++ + + + + Sbjct: 22 PDDRRHIPVLVDRVDQLLAPAIEAATADGATDVVLVDATLGMGGHTLALLQAHPRLRVVG 81 Query: 64 LDRDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQ 117 +DRDP A+S ++ + ++ L A + ++ + + V V+FDLGVSS+Q Sbjct: 82 IDRDPQALSIAEQRITAAGLADRVELVHAVYDRIGEVIAATVASGRVQAVLFDLGVSSVQ 141 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D DRGF++ + PLDMRM + GI+A++V+N ++TRIL GEE+ A RIA A+ Sbjct: 142 LDEADRGFAYAQDAPLDMRMDPTSGITAAEVINTYPGAEITRILREYGEERFAQRIARAV 201 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V R PF T+ L L++ + ++ +PA R+FQALRI VN+E+ L + + SA Sbjct: 202 VTERAKRPFTTSARLVELVRANIPAAARRTGGNPAKRTFQALRIEVNDELGALQRAIPSA 261 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G ++V+S+ SLEDR+VK+ A + + H F+ + + P Sbjct: 262 LQHLSVAGRIVVMSYQSLEDRIVKRAIAPLTLSRTPLDLPTELPGHDPEFRWVVRGSQAP 321 Query: 296 TQEDVAFNR 304 T E++ N Sbjct: 322 TDEEIQANP 330 >gi|153813493|ref|ZP_01966161.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174] gi|149830437|gb|EDM85529.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174] Length = 352 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 92/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++ +++ L PG+ DAT G GG++++ + ++ A D DP Sbjct: 47 NTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ +++ + +L +L +E IA AI + R+ Sbjct: 167 FRADGPLDLRLNQEKGISAAERLDKISRDELAGMLYENSDEPYCEEIAKAITDEIRKGNR 226 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHP-----ATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++T+ F R FQALRI VN E E L + + AL Sbjct: 227 VDTTTKLREIIEETLDFLPEKEKKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDAL 286 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS ED+LVKK + + + K V+ P+ ++ Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKAGYKAGIYSDYA--------------KDVIRPSAQE 332 Query: 300 VAFNRRSRSAKLRAGMRTV 318 A N R+RS K+R +++ Sbjct: 333 CAQNGRARSTKMRWAVKSE 351 >gi|283797253|ref|ZP_06346406.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|291075103|gb|EFE12467.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|295092386|emb|CBK78493.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum K10] Length = 383 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+V LDAT G GG++R K ++ LD DP Sbjct: 84 GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143 Query: 75 QETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D + ++ F+ + + D ++ DLGVSSMQID +RGF+++ Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTT 188 GPLD+RM G +A++ + + ++ +L +E A I+H + R + TT Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLKRGGRIDTT 263 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +++ + F K R+FQALRI VN+E E L L ALK+GG Sbjct: 264 TQLREAVEEALSFLPEKERKEAVKKSCARTFQALRIDVNSEFEVLYAFLEKLPSALKSGG 323 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS EDRLVKK F + I ++V+ P+ E+ A N Sbjct: 324 KAAILTFHSGEDRLVKKSFREYKRAGLYSE--------------IAQEVIRPSAEECARN 369 Query: 304 RRSRSAKLRAGMR 316 R++S K+R ++ Sbjct: 370 SRAKSTKMRWAVK 382 >gi|193216628|ref|YP_001999870.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1] gi|263456519|sp|B3PMB4|RSMH_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193001951|gb|ACF07166.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 286 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 151/291 (51%), Gaps = 14/291 (4%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 + +D T G G+S K +I D+D A+ + ++ F+L Q Sbjct: 1 MEIKSDGTYVDLTLGRAGHSLEILKKLINGRLICFDKDNEAIKESYKKLQKISPNFTLIQ 60 Query: 90 ATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISAS 145 F L+ + + VDG++ DLGVSS QID RGFS+ + GPLDMRM+ SA Sbjct: 61 NDFRFLKAELEKLGINEVDGILADLGVSSPQIDDPTRGFSYSQEGPLDMRMNQQNSFSAK 120 Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 D+++ + +LT+IL + K A+ +A AIV +R P ++T +L +I+ + Sbjct: 121 DIIDNFDESELTKILIKNADVKLANLVAKAIVAKR---PIKSTSELVEIIKNALPAKIVR 177 Query: 206 RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR 265 +PA FQALRI VN+E+ L L A + LK G +++++FHS ED +VK FF + Sbjct: 178 EKNPAKAVFQALRIEVNDELGALTAMLADATQLLKKDGKILIITFHSKEDSIVKNFFQKQ 237 Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + + + + +K++ P++++ N RSRSAKLR + Sbjct: 238 NYVDPRLNKLPINIQ-----KIWKQKIIFPSEDEKLQNNRSRSAKLRVVKK 283 >gi|111221622|ref|YP_712416.1| S-adenosyl-methyltransferase MraW [Frankia alni ACN14a] gi|123143317|sp|Q0RNP9|RSMH_FRAAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|111149154|emb|CAJ60837.1| S-adenosyl-dependent methyl transferase [Frankia alni ACN14a] Length = 325 Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 168/326 (51%), Gaps = 33/326 (10%) Query: 19 DHVPVLLEKVIALLNP---APGKVILDAT-------------FGAGGYSRSFCKMGSNVI 62 H PVL ++V+ LL P PG V++DAT F V+ Sbjct: 1 MHTPVLTDRVLELLAPALSRPGAVVVDATVGLGGHAAALLAAF-----------PEVRVV 49 Query: 63 ALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118 LDRD A++ E +R E+ L A + ++ + V GV+FDLGVSS+Q+ Sbjct: 50 GLDRDLDALAHSGERLRALAPERVRLVHAVYDEIGTVLAGLGSARVQGVLFDLGVSSLQL 109 Query: 119 DCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D RGF++ + PLDMRM G++A++V+N + L RIL GEE+ A RIA ++V Sbjct: 110 DTDARGFAYSRDAPLDMRMDATRGLTAAEVLNTYDAAALARILRDYGEERFARRIAESVV 169 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R PF T+ L L++ + + +PA R+FQALRI VN+E++ LA+ L +A Sbjct: 170 RARAVEPFTTSARLVDLVRDAIPAPARRTGGNPAKRTFQALRIEVNSELDVLARALPAAF 229 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL GG L+V+S+HSLEDRLVK+ + ++ + + +T+ Sbjct: 230 DALAVGGRLVVLSYHSLEDRLVKRELRGYAETLVPPDMPVVPAGAEPRLRWLTRGAEPAG 289 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSI 322 + + A N R+ S +LRA RT Sbjct: 290 EVEKADNPRAASVRLRAAERTAPNPD 315 >gi|325067114|ref|ZP_08125787.1| S-adenosyl-methyltransferase MraW [Actinomyces oris K20] Length = 319 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 160/312 (51%), Gaps = 24/312 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCK 56 + +G H PVLLE+ + LL PA V++D T G GG++ + + Sbjct: 7 QATAADAVGRHEPVLLERCLDLLAPAIEGAVSSTSTTAPARPVMIDCTLGMGGHTEAALE 66 Query: 57 MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVV 108 + V+ +DRDP A++ + + ++F QAT+ + + VD V+ Sbjct: 67 RFTTLKVVGIDRDPEAIALASARLARFGDRFIAVQATYDAVGRVAREHSVRAEGTVDAVL 126 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 DLGVSS+Q+D RGFS+ ++ PLDMRM S G++A D++ A+ +LTRIL GEE+ Sbjct: 127 MDLGVSSLQLDEASRGFSYARTAPLDMRMDQSSGMTAQDLLESADAAELTRILRTYGEER 186 Query: 168 QASRIAHAIVKRRQ--SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 ASRIA AIV+RR+ T + Q ++ N HPA R+FQALRI VN E+ Sbjct: 187 FASRIAAAIVRRRESGQPVTSTQDLAELVRQSVPAAARRNGGHPAKRTFQALRIAVNAEL 246 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 + L + + A +L+ GG L+V S+ SLEDR+VK+ A + + A Sbjct: 247 DVLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEADLPYL 306 Query: 286 QSITKKVVVPTQ 297 + IT Sbjct: 307 ELITNGAEKADA 318 >gi|225388291|ref|ZP_03758015.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme DSM 15981] gi|225045638|gb|EEG55884.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme DSM 15981] Length = 350 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 153/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + +++++ L PG+ LDAT G GG++ K ++ ALD DP Sbjct: 46 STPAGMHISICVKEILDFLQIQPGQNGLDATLGYGGHTLEMLKCLEGKGHIHALDVDPIE 105 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + + D E ++ F+++ + D V+ DLGVSSMQID +RGF+ Sbjct: 106 SEKTKARLADLGYGPEILTVRLQNFAEIDQVAAEAGRFDFVLADLGVSSMQIDNPERGFT 165 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 F+ GPLD+RM+ GISA+ + + +++LT +L +E A IA + R + Sbjct: 166 FKAEGPLDLRMNPERGISAAQRLKEITLEELTGMLTENADEPYAEEIAREVTGRLKRGEE 225 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I + F K + R+FQALRI VNNE E L L + L Sbjct: 226 IATTTKLYQVIGDALAFLPEKDRKEAVKKSSQRTFQALRIDVNNEYEALYAFLEKLPEVL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG +++FHS EDRLVKK F + I V+ P+QE+ Sbjct: 286 APGGRAAILTFHSGEDRLVKKSFKQYKKEGRYSD--ICEE------------VIRPSQEE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R +R Sbjct: 332 CARNSRARSTKMRWAVR 348 >gi|295109383|emb|CBL23336.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162] Length = 350 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 159/317 (50%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ L PG+ DAT G GG++++ + ++ A D DP Sbjct: 47 NTPAGMHISIMVKEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEE 106 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 107 SAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFS 166 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA++ ++ +L +L +E IA AI + R+ Sbjct: 167 FRADGPLDLRLNQEKGISAAERLDTIGRDELAGMLYENSDEPYCEEIAKAITDEIRRGNR 226 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+KT+ F K+ R FQALRI VN E E L + + AL Sbjct: 227 VDTTTKLREIIEKTLSFIPEKERKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDAL 286 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS ED+LVKK + + + K V+ P+ ++ Sbjct: 287 KPGGRVAILTFHSGEDKLVKKALKAGYKAGIYSDYA--------------KDVIRPSAQE 332 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R ++ Sbjct: 333 CAQNGRARSTKMRWAVK 349 >gi|241998832|ref|XP_002434059.1| SAM dependent methyltransferase, putative [Ixodes scapularis] gi|215495818|gb|EEC05459.1| SAM dependent methyltransferase, putative [Ixodes scapularis] Length = 368 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 151/349 (43%), Gaps = 37/349 (10%) Query: 5 SCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-- 59 K MSSA+ H PV+L +VI LN G+ ++D TFGAGG+S++ Sbjct: 18 KAKQMSSAVSQLETERFTHTPVMLTEVIDALNVQDGQTLIDFTFGAGGHSKALLSAAKDV 77 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVS 114 V +DRDP A +Y + + FS++++ + VDG + D G S Sbjct: 78 KVFGVDRDPTAYRAACSIATEYPGRLFPVLSRFSEVEETLEQLGVQPNSVDGAILDCGCS 137 Query: 115 SMQID-------CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGE-- 165 SMQ D G F LD S ++ +++V +I Sbjct: 138 SMQFDDPSRGSIHGIMKFPLNLCVKLDCLRHPSSYVIGTLLYKSSVDIKKQIQKYFSNAS 197 Query: 166 --EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN---NRIHPATRSFQALRIF 220 E + +++ ++ Q+ L ++ ++ H AT++F ALRIF Sbjct: 198 TAETLCGNVFESLIVLSRNERHQSWVGAGQLYIGSLGERRDMLGRPTHLATKTFMALRIF 257 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 VN+E+ EL L + L+ GG L V+SFHSLEDRLVK+ F + Sbjct: 258 VNDELNELNHALTVGRRLLRPGGRLAVLSFHSLEDRLVKRHFQGIDLDEPVSGSIAQKYR 317 Query: 281 HPAVF-----QSITKK----VV----VPTQEDVAFNRRSRSAKLRAGMR 316 + A + + ++ + +P+ ++V N RSRSAKLR + Sbjct: 318 NAATWHGREEMEVARRRVWEPIGTLGLPSAQEVERNPRSRSAKLRVAAK 366 >gi|223935232|ref|ZP_03627150.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] gi|223896116|gb|EEF62559.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] Length = 353 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 29/314 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H + + +++ +L P PG++ +DAT G GG++ + G ++ LD DP + Sbjct: 53 GSHRSICVREIMEVLAPKPGEIAVDATLGYGGHALEILRAIQPGGRLVGLDVDPMEMPKT 112 Query: 75 QETMRDYK---EQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +R E + ++ F+ L G D ++ DLG+SSMQID RGF+F+ Sbjct: 113 ETRLRSVGAPAESLIIRRSNFAGLPQVLAGEGIPGADIILADLGLSSMQIDNPARGFTFK 172 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLD+R++ G AS ++ +L RIL +E A +A I++ + P T Sbjct: 173 FEGPLDLRLNPERGRPASALLATLKEPELIRILQDNADEPDAGLLAKGILQAQLRYPITT 232 Query: 188 TQDLSSLIQKTVYFSKNNRIHP-----ATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I++ + N+ R FQALRI VN+E L LR+ +G Sbjct: 233 TTGLAEVIREAFRSAHRNKTKDEANTSIRRVFQALRIAVNDEFGALDMFLRNLPGCSNSG 292 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS EDR VKK F + ++ P++E+ Sbjct: 293 GRVAILTFHSGEDRRVKKAFQDGKRAGVYSSIAEE--------------IIRPSREETRS 338 Query: 303 NRRSRSAKLRAGMR 316 N R+ SAKLR +R Sbjct: 339 NPRASSAKLRWAIR 352 >gi|289810554|ref|ZP_06541183.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 231 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 134/233 (57%), Gaps = 12/233 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G SA++ + A D+ +L GEE+ A RIAHAIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q + + + Sbjct: 180 TKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQATKKLAQRTR 231 >gi|167756448|ref|ZP_02428575.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402] gi|167703856|gb|EDS18435.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402] Length = 362 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+ +++++++ L+ G++ LD T G GG++ + ++ ALD DP Sbjct: 59 STPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHMYALDIDPIE 118 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 +E + + ++ F + + G D V+ DLGVSSMQID +RGFS Sbjct: 119 SIKTKERLLGKGYGEDVLTIKNCNFKDIDIISKEVGLFDFVLADLGVSSMQIDNPERGFS 178 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184 ++K GPLD+R++ G+ AS + + N L ++ +E A IA I +S Sbjct: 179 YKKEGPLDLRLNPQKGVPASIKLQELNRDQLEQLFIENSDEPYAKEIARNIDSYLKSGQL 238 Query: 185 FQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I+K+ V K+ A R FQALRI VN E + L + + L Sbjct: 239 ITTTTQLYKIIEKSLSSIPVTERKDIVKKSAARVFQALRIEVNREFDVLIEFMDKLPTIL 298 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS EDR+VKK F + + + V+ P++E+ Sbjct: 299 KPGGRVAILTFHSGEDRIVKKAFKEMKNLGIYSD--------------VARNVIRPSKEE 344 Query: 300 VAFNRRSRSAKLRAGMR 316 N R++S K+R ++ Sbjct: 345 CHMNSRAKSTKMRWAIK 361 >gi|225568788|ref|ZP_03777813.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM 15053] gi|225162287|gb|EEG74906.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM 15053] Length = 351 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 162/317 (51%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP-F 69 G H+ + +++++ L PG+ LDAT G GG++ + ++ ALD DP Sbjct: 46 STPAGMHISICVKEILEFLQIRPGQRGLDATLGYGGHTSKMLECLKGQGHIYALDVDPIE 105 Query: 70 AVSCGQ--ETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 +V + E + + ++ F+++ + G D V+ DLGVSSMQID DRGF+ Sbjct: 106 SVRTAKRLEKLGYGPDILTVKLQNFAKIDQVSREAGLFDFVLADLGVSSMQIDNPDRGFT 165 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184 ++ GPLD+RM+ GISA++ + ++L +L +E + IA A+ ++ R+ Sbjct: 166 YKAEGPLDLRMNPQKGISAAERLRDITKEELEGMLRENSDEPYGAEIAEAVTEKIRKGGE 225 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT L I++ + F K + R+FQALRI VN+E E L L L Sbjct: 226 IETTTQLYKTIEEALAFLPEKDRKEAVKKSSQRTFQALRIDVNSEFEALYSFLEKLPDVL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHS EDRLVKK F + + I+K+V+ P+QE+ Sbjct: 286 APGGRVAILTFHSGEDRLVKKSFKQFAKSGVYSE--------------ISKEVIRPSQEE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R +R Sbjct: 332 CRQNGRARSTKMRWAVR 348 >gi|331091351|ref|ZP_08340191.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404512|gb|EGG84056.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 2_1_46FAA] Length = 349 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+ + +++++ L PG+ LDAT G GG++ K ++ ALD D Sbjct: 46 STPVGMHISICVKEILDFLQIQPGQRGLDATLGYGGHTLEMLKCLKGEGHLYALDVDTVE 105 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + +E ++ E ++ F + + D V+ DLGVSSMQID +RGF+ Sbjct: 106 SAKTKERLQKLGYGEEILTIKNINFRDIDKVCEEAGKFDFVLADLGVSSMQIDNPERGFT 165 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 ++K GPLD+R++ G+SA++ + + +++L + +E A IA I + + Sbjct: 166 YKKEGPLDLRLNQKKGVSAAERLKEVTMEELEGMFVENADEPYAHEIAEKIFAKLRRGEA 225 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++ + F R+FQALRI VN+E E L + + L Sbjct: 226 IDTTTKLQQIIEEALKFIPEKERKEAVKKSCQRTFQALRIDVNSEFEVLYEFMEKLPNVL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS EDR+VK+ F + I V+ P+ E+ Sbjct: 286 KEGGRVAILTFHSGEDRIVKRAFKELKRAGVYSD--------------IANDVIRPSAEE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 +N R++S K+R ++ Sbjct: 332 CNYNSRAKSTKMRWAIK 348 >gi|325263876|ref|ZP_08130609.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] gi|324030914|gb|EGB92196.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] Length = 357 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + +++++ L PG+ LDAT G GG++ K ++ ALD DP Sbjct: 54 STPAGMHISICVQEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLENQGHIYALDVDPIE 113 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 +E + + E ++ F+ + + D ++ DLGVSSMQID +RGFS Sbjct: 114 SQKTKERLSNLGYGPEILTVRLLNFANIDQIAAEAGPFDFILADLGVSSMQIDNPERGFS 173 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAP 184 ++ GPLD+RM+ GISA++ + ++L +L +E A IA A+V + ++ Sbjct: 174 YKTEGPLDLRMNPEAGISAAERLGTITSEELQGMLVENADEPYAEEIADAVVLETKKGKK 233 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT+ L +I+ + F K R+FQALRI +NNE E L L L Sbjct: 234 IETTRQLREVIESALSFLPAAERKEAVKKSCQRTFQALRIDINNEFEVLYAFLDKLPDVL 293 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG +++FHS EDRLVKK F + + + +K V+ P+ E+ Sbjct: 294 APGGRAAILTFHSGEDRLVKKSFKRLYNEGIYSDY--------------SKDVIRPSAEE 339 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 340 CIRNSRARSTKMRWAVK 356 >gi|225028745|ref|ZP_03717937.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353] gi|224953936|gb|EEG35145.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353] Length = 352 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 158/318 (49%), Gaps = 29/318 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + +++++ L PG+ LD T G GG++R + ++ LD DP Sbjct: 49 STPAGMHISICVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLECLQGEGHIYGLDVDPIE 108 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + + +R + ++ Q F + + G D V+ DLGVSSMQID +RGFS Sbjct: 109 IVKTTDRLRKAGYGEDILTIIQQNFRNIDLVAEEHGLFDFVLADLGVSSMQIDNPERGFS 168 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 ++ GPLD+R++ GISA++ + + ++ +L +E A +IA I+K + Sbjct: 169 YKVEGPLDLRLNPDKGISAAERLRELTRDEIEGMLRENADEPYAEQIAKEIMKTFRQGEQ 228 Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L +I++ + F +++ R+FQALRI VN+E E L + L Sbjct: 229 IDTTGQLKEVIERALVFLPDDKEKKDTIKKTCQRTFQALRIDVNSEFEVLEEFLEKLPHI 288 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG + +++FHS EDRLVKK + ++ + K V+ P++E Sbjct: 289 LAPGGRVAILTFHSGEDRLVKKIWKR--------------QQKEGLWSEVAKNVIRPSKE 334 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RS K+R ++ Sbjct: 335 ECHRNGRARSTKMRWAIK 352 >gi|116072034|ref|ZP_01469302.1| methyltransferase [Synechococcus sp. BL107] gi|116065657|gb|EAU71415.1| methyltransferase [Synechococcus sp. BL107] Length = 285 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 28/303 (9%) Query: 24 LLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79 + + V+A P V++DAT G GG+S + ++I LD+DP A + E + Sbjct: 1 MADAVVAGAEHLPHQNGVLIDATLGGGGHSALLLERFPGFHLIGLDQDPTARAAAAERLA 60 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + ++ + F+ Y P V V+ DLGVSS Q+D +RGFSF+ GPLDMRM+ Sbjct: 61 AFGDRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDMRMNP 117 Query: 140 SGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ--TTQDLSSLI 195 +A++++++ L ++ GEE+ + RIA I + T ++ Sbjct: 118 GSDAETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALAYAVA 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ RIHPATR+FQALRI VN+E+ L + L A L+ GG++ V+SFHSLED Sbjct: 178 GCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLDQAPDWLEPGGVMGVISFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK F + IT+K V T+++ N RSRSAK R Sbjct: 238 RRVKTAF-----------------LQDERLERITRKPTVATEDEQDSNPRSRSAKWRLAR 280 Query: 316 RTV 318 R Sbjct: 281 RVN 283 >gi|119588675|gb|EAW68269.1| methyltransferase 5 domain containing 1, isoform CRA_d [Homo sapiens] Length = 345 Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 158/328 (48%), Gaps = 77/328 (23%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +K GPLDMRM + ++ + ++ Sbjct: 187 RKDGPLDMRMDGAFPPSAIYTRKDLLQ--------------------------------- 213 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ Sbjct: 214 -----------------RSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVA 256 Query: 248 VSFHSLEDRLVKKFF-------------ASRSGKVMAVRHMIPSNAH------PAVFQSI 288 +SFHSLEDR+VK+F + K + + P +++ I Sbjct: 257 LSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELI 316 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 KKV+ P +DV N R RSAKLRA ++ Sbjct: 317 HKKVLSPQDQDVQDNPRGRSAKLRAAIK 344 >gi|47230508|emb|CAF99701.1| unnamed protein product [Tetraodon nigroviridis] Length = 437 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 114/388 (29%), Positives = 170/388 (43%), Gaps = 83/388 (21%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGK----------VILDATFGAGGYSRSFCKMGS-- 59 ++ H PV+L++V+ L+ PG+ V+LD TFG GG++++ M Sbjct: 49 SVSAENPPHTPVMLKEVLHYLDIQPGQGEGSRLSIFHVVLDMTFGGGGHTKAILSMVPEV 108 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVS 114 V+ALDRDP A+S ++ ++ Q + FSQL + D VD V+ D G S Sbjct: 109 KVLALDRDPTAISLAEKLAKESSGQVTPLLGRFSQLDVLLSDLKVKPGSVDAVLLDAGCS 168 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGISASD-------------------VVNQANVK- 154 SMQ+D +RGFS K GPLDMRM + V + Sbjct: 169 SMQMDQAERGFSLSKDGPLDMRMDGESRISELSAFATVSKDMTSSSLIGLCFVRRYPEMP 228 Query: 155 --------------DLTRILGILGEEKQASRIAHA-----------------------IV 177 + GE + +R +H + Sbjct: 229 SAADVVNTPGSTGSCIHHHGLRGGEMGRENRFSHCGGTSHQPHHPDAAAGQRGGSGQTVK 288 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + + L + + H AT++FQAL IFVN+E++EL GLR+A + Sbjct: 289 RLRPQQSARRFRSLPAAVAYARKDRLRRPAHAATKTFQALCIFVNDELKELHAGLRAARE 348 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---------SNAHPAVFQSI 288 AL+ GG L V++FHSLEDRLVK+F + P + A A + + Sbjct: 349 ALRPGGRLCVITFHSLEDRLVKRFLRGHDLAHSDQQLFRPGKRDLPKETNTAESAHWLLL 408 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +KV+ P ++DV N R RSAKLRA +R Sbjct: 409 RRKVIAPERDDVRDNPRGRSAKLRAALR 436 >gi|153855593|ref|ZP_01996709.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814] gi|149752014|gb|EDM61945.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814] Length = 354 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 158/316 (50%), Gaps = 28/316 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 G H+ + + +++ + PG+ LDAT G GG++ + ++ LD DP + Sbjct: 53 GMHISICVNEILDFFDIQPGQQGLDATLGYGGHTSKMLEKLQGEGHIYGLDVDPIESAKT 112 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + ++ F+ + + D V+ DLGVSSMQID DRGF+F+ Sbjct: 113 KKRLEEKGFGPNILTVKLENFANIDKVAEEAGKFDFVLADLGVSSMQIDNPDRGFTFKAE 172 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+RM+ GISA++ + + ++LT +L +E A IA AI ++ R+ +TT Sbjct: 173 GPLDLRMNPEKGISAAERLRDISKEELTGMLIENSDEPYAEEIAEAITEKIRKGGKIETT 232 Query: 189 QDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I++T+ F A R FQALRI VNNE E L L LK GG Sbjct: 233 TGLHQVIEETLAFIPEKERKEAVRKSSQRVFQALRIDVNNEFEVLYDFLDKLPGVLKPGG 292 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVKK F + + I K V+ P++E+ N Sbjct: 293 KVAILTFHSGEDRLVKKSFKQWKKEGLYSE--------------IAKDVIRPSKEECFRN 338 Query: 304 RRSRSAKLRAGMRTVE 319 R++ K+R +R E Sbjct: 339 SRAKCTKMRWAIRAEE 354 >gi|309807753|ref|ZP_07701687.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 01V1-a] gi|308169013|gb|EFO71097.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 01V1-a] Length = 288 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 95/249 (38%), Positives = 138/249 (55%), Gaps = 13/249 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE- 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 77 ----TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV RR P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVARRAIKPITT 186 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246 Query: 247 VVSFHSLED 255 V++F SLED Sbjct: 247 VITFQSLED 255 >gi|319936250|ref|ZP_08010669.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1] gi|319808682|gb|EFW05224.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1] Length = 346 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+ +++ +++ L+ G++ LD T G GG++ + ++ ALD DP Sbjct: 43 STPVGMHLSIMVNEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNHTGHMYALDIDPIE 102 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 +E + + E ++ Q F + + G D V+ DLGVSSMQID +RGFS Sbjct: 103 SVKTKERLFNKGYGEELLTIKQCNFKDIDYVSKEVGLFDFVLADLGVSSMQIDNPERGFS 162 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184 ++K GPLD+R++ GI AS + + N L ++ +E A IA I ++ Sbjct: 163 YKKEGPLDLRLNPEKGIPASQKLQELNKTQLEQLFIDNSDEPYAKEIAKNIDSFLKTGRL 222 Query: 185 FQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT DL +I+K+ V K + A R FQALRI VNNE + L + + L Sbjct: 223 IETTTDLYKIIEKSLSFIPVNERKESIKKSAARVFQALRIEVNNEFDVLIEFMEKLPNIL 282 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K+GG + +++FHS EDR+VKK F + + V+ P++E+ Sbjct: 283 KSGGRVAILTFHSGEDRIVKKAFKEMKNLGIYSDAA--------------RNVIRPSKEE 328 Query: 300 VAFNRRSRSAKLRAGMR 316 N R++S K+R ++ Sbjct: 329 CHMNSRAKSTKMRWAIK 345 >gi|326792370|ref|YP_004310191.1| ribosomal RNA small subunit methyltransferase H [Clostridium lentocellum DSM 5427] gi|326543134|gb|ADZ84993.1| Ribosomal RNA small subunit methyltransferase H [Clostridium lentocellum DSM 5427] Length = 349 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFA 70 G H+ + +++++ L PG+ LDAT G GG++ K ++ ALD DP Sbjct: 46 STPAGMHISICVKEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLEAKGHMYALDVDPIE 105 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + D E ++ Q F + + G D ++ DLGVSSMQID DRGFS Sbjct: 106 IVKTKKRLEDLGYGEEILTIKQLNFRDIDQVAAENGLFDFMLADLGVSSMQIDNPDRGFS 165 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 F+ GPLD+R+ GISA++ + K+L +L +E A I+ I K R+ Sbjct: 166 FKYEGPLDLRLDPEKGISAAERLKDMTQKELEGMLIENSDEPYAKEISEAIISKIRKKDY 225 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I + + F ++ R+FQALRI VN+E E L + L L Sbjct: 226 ISTTTKLQQVIGEALEFIPEDKRKEAIKKSCQRTFQALRIDVNSEFEVLEEFLEKLPNVL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHS EDRLVKK F + + V+ P+ E+ Sbjct: 286 AKGGRVAILTFHSGEDRLVKKSFKRLLREGVYSEIATE--------------VIRPSAEE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 332 CNMNGRARSTKMRWAIK 348 >gi|291561054|emb|CBL39854.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SSC/2] Length = 352 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 28/330 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+ + +++++ + PG+ LDAT G GG++R + Sbjct: 37 GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSS 115 ++ ALD DP ++ + D + ++ F+ + + D ++ DLGVSS Sbjct: 97 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA- 173 MQID +RGFS++ GPLD+R++ GISA++ + + +L +E A +IA Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228 + ++ +TT DL +I++ + F K R+FQALRI VN+E E L Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L AL GG + ++ FHS EDRLVK F + I Sbjct: 277 EELLEKLPDALAPGGKVAILIFHSGEDRLVKHAFKYGKKAGIYSD--------------I 322 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K V+ P++E+ A N R++S K+R ++ Sbjct: 323 AKDVIRPSKEECAQNGRAKSTKMRWAIKVK 352 >gi|323485088|ref|ZP_08090441.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum WAL-14163] gi|323401644|gb|EGA93989.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum WAL-14163] Length = 348 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+ + +++++ L PG+ LDAT G GG++++ + ++ LD D Sbjct: 45 STPVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAILECLQGKGHIYGLDVDAVE 104 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 ++ + E ++ + F+ + + D V+ DLGVSSMQID DRGFS Sbjct: 105 QEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEAGTFDFVLADLGVSSMQIDNPDRGFS 164 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 ++ GPLD+R+ GISA++ + + ++L +L +E A+ I+ I RR+ Sbjct: 165 YKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTA 224 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L LI++ + F K R+FQALRI VN+E E L + L L Sbjct: 225 IDTTTKLRRLIEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDIL 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG +++FHS EDRLVKK F + + V+ PT E+ Sbjct: 285 SPGGRAAILTFHSGEDRLVKKSFKRLKKQGVYSEIADE--------------VIRPTAEE 330 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 331 CNMNSRARSTKMRWAVK 347 >gi|310658142|ref|YP_003935863.1| methyltransferase [Clostridium sticklandii DSM 519] gi|308824920|emb|CBH20958.1| Methyltransferase [Clostridium sticklandii] Length = 348 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ + + +++ PG++ DAT G GG++ K + A D DP Sbjct: 45 NTPAGMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCLEHQGCIFATDVDPIE 104 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + + + + FS++ + D ++ DLGVSSMQID DRGF+ Sbjct: 105 SQKTKARLESLGYGEDMLKIRNMNFSEIDKISKEAGKFDFILADLGVSSMQIDNPDRGFT 164 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 +++ GPLD+R++ GISA++ + + N ++ +L +E A I+ AI+KR + Sbjct: 165 YKREGPLDLRLNPEKGISAAERLKEMNQYEIEGMLLENSDEPHAEIISKAIIKRFEEGEK 224 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT L LI+ T+ F + R FQALRI VN E E L L L Sbjct: 225 IETTSQLRDLIEDTLSFIPSKDREQEIKKTCQRVFQALRIDVNQEFEVLYDFLEKLPAVL 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 G ++++SFHS EDRLVKK F + + + I+ V+ P+ E+ Sbjct: 285 APNGKVLIMSFHSGEDRLVKKSFKNYYREGIYSE--------------ISTDVIRPSAEE 330 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R +R Sbjct: 331 CNRNPRARSTKIRFAIR 347 >gi|317498357|ref|ZP_07956653.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894362|gb|EFV16548.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 398 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 160/330 (48%), Gaps = 28/330 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+ + +++++ + PG+ LDAT G GG++R + Sbjct: 83 GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 142 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSS 115 ++ ALD DP ++ + D + ++ F+ + + D ++ DLGVSS Sbjct: 143 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 202 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA- 173 MQID +RGFS++ GPLD+R++ GISA++ + + +L +E A +IA Sbjct: 203 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 262 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228 + ++ +TT DL +I++ + F K R+FQALRI VN+E E L Sbjct: 263 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 322 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L AL GG + +++FHS EDRLVK F + + Sbjct: 323 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFKYGKKVGIYSD--------------V 368 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K V+ P++E+ A N R++S K+R ++ Sbjct: 369 AKDVIRPSKEECAQNGRAKSTKMRWAIKVK 398 >gi|167768055|ref|ZP_02440108.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1] gi|167710384|gb|EDS20963.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1] Length = 352 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 159/330 (48%), Gaps = 28/330 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+ + +++++ + PG+ LDAT G GG++R + Sbjct: 37 GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSS 115 ++ ALD DP ++ + D + ++ F+ + + D ++ DLGVSS Sbjct: 97 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA- 173 MQID +RGFS++ GPLD+R++ GISA++ + + +L +E A +IA Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228 + ++ +TT DL +I++ + F K R+FQALRI VN+E E L Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L AL GG + +++FHS EDRLVK F + + Sbjct: 277 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFKYGKKVGIYSD--------------V 322 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K V+ P++E+ N R++S K+R ++ Sbjct: 323 AKDVIRPSKEECTQNGRAKSTKMRWAIKVK 352 >gi|302849292|ref|XP_002956176.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f. nagariensis] gi|300258479|gb|EFJ42715.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f. nagariensis] Length = 305 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 110/318 (34%), Positives = 158/318 (49%), Gaps = 35/318 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 +L +V+ P V LD T GAGG++ ++ +D DP A + +R Sbjct: 1 MLNEVLDAFQPVTLNVYLDCTLGAGGHAAKIASAHPEMQMLLGIDLDPTAHVVAEPRIRA 60 Query: 81 YKE------QFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 L + + L+ P +G++ DLG+SSMQID DRGFSF + Sbjct: 61 EAAGRSARLDVRLLRGNYRDLKRLLATVSTPSPRPNGILMDLGISSMQIDTADRGFSFMR 120 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + SA +V+N + +L RI+ GEEK +A IV+ R+ AP +TT Sbjct: 121 DGPLDMRMDPTAALSAEEVLNTWSEAELGRIIRDFGEEKLWKVVARRIVQAREVAPIRTT 180 Query: 189 QDLSSLIQKTVYFSKN------NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 Q L + +T K+ IHPATR+FQALRI VN+E+++L + L A AL G Sbjct: 181 QQLVKAVGQTQLVGKSPRKASAKGIHPATRTFQALRIAVNDELQKLEKTLPDAIDALAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SFHSLEDR+VK F +G+ + A+ + Sbjct: 241 GRLAVISFHSLEDRIVKHAFMRAAGRPTPEEENLVYGQDNAL--------------ETEA 286 Query: 303 NRRSRSAKLRAGMRTVER 320 N R+RSAKLR + ++ Sbjct: 287 NARARSAKLRILQKLPDK 304 >gi|323693536|ref|ZP_08107740.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673] gi|323502391|gb|EGB18249.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673] Length = 348 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 153/317 (48%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 +G H+ + +++++ L PG+ LDAT G GG++++ + ++ LD D Sbjct: 45 STPVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAMLECLQGKGHIYGLDVDAVE 104 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ + E ++ + F+ + + D V+ DLGVSSMQID DRGFS Sbjct: 105 QEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEVGTFDFVLADLGVSSMQIDNPDRGFS 164 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAP 184 ++ GPLD+R+ GISA++ + + ++L +L +E A+ I+ I RR+ Sbjct: 165 YKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTA 224 Query: 185 FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L L+++ + F K R+FQALRI VN+E E L + L L Sbjct: 225 IDTTTKLRRLVEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDIL 284 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG +++FHS EDRLVKK F + + V+ PT E+ Sbjct: 285 SPGGRAAILTFHSGEDRLVKKSFKRLKKQGVYSEIADE--------------VIRPTAEE 330 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 331 CNMNSRARSTKMRWAVK 347 >gi|71893756|ref|YP_279202.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J] gi|72080726|ref|YP_287784.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448] gi|88909202|sp|Q4A7X8|RSMH_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909203|sp|Q4A9T0|RSMH_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71851883|gb|AAZ44491.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J] gi|71913850|gb|AAZ53761.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 296 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 153/300 (51%), Gaps = 16/300 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVPVLLE++I L P +D T G GG+S + + ++ D+D A+ + Sbjct: 1 MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK+ + + FS+ Y+ + + VDG + DLGVSS QID +RGFS+ K G L Sbjct: 61 KLLAYKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNL 120 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA V+N+ + L I G+ A IA AI+ R P +TT +L Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K + + + FQA+RI VNNE++ L + L K LK G + +++FHS Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VKK F K F KV P ++ N R++SAKLR Sbjct: 238 LEDRIVKKAFLDLIRKDKLE----FFQKGLPKFSM---KVFRPKANELKSNPRAKSAKLR 290 >gi|54020186|ref|YP_115916.1| hypothetical protein mhp406 [Mycoplasma hyopneumoniae 232] gi|76363868|sp|Q600P9|RSMH_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53987359|gb|AAV27560.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 296 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 104/300 (34%), Positives = 151/300 (50%), Gaps = 16/300 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVPVLLE++I L P +D T G GG+S + + ++ D+D A+ + Sbjct: 1 MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + K+ + + FS+ Y+ + + VDG + DLGVSS QID RGFS+ K G L Sbjct: 61 KLLALKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPARGFSYSKDGNL 120 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA V+N+ + L I G+ A IA AI+ R P +TT +L Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K + + + FQA+RI VNNE++ L + L K LK G + +++FHS Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VKK F K F KV P ++ N R++SAKLR Sbjct: 238 LEDRIVKKAFLDLIRKDKLE----FFQKGLPKFSM---KVFRPKANELKSNPRAKSAKLR 290 >gi|42559447|sp|Q7U3X9|RSMH_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 296 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 161/312 (51%), Gaps = 28/312 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 + + HVPVL E V+ P +++DAT G GG+S + G +I LD+D Sbjct: 1 MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A + E + + ++ ++ F+ +Y P + V+ DLGVSS Q+D +RGFSF+ Sbjct: 61 TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117 Query: 129 KSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK--RRQSAP 184 GPLDMRM+ G +A++++++ +L ++ GEE+ + RIA I Q A Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GGL Sbjct: 178 SGTAALAYAVAGCYPPQGTPRRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGL 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + ++SFHSLEDR VK F + IT+K VV T+E+ N Sbjct: 238 VGIISFHSLEDRRVKTAF-----------------LRDERLERITRKPVVATEEEEEANP 280 Query: 305 RSRSAKLRAGMR 316 RSRSAK R + Sbjct: 281 RSRSAKWRLARK 292 >gi|171915286|ref|ZP_02930756.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM 4136] Length = 352 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 27/317 (8%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 ++ G H+P++L +++ +L P PG+ LD T G GG++ + + ++ LD+D Sbjct: 51 ASGKTPAGQHIPIMLPEILEVLAPQPGERALDCTLGYGGHAEALLRAVQPDGCLMGLDQD 110 Query: 68 PFAVSCGQETMRDYKEQ---FSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDC 120 + ++ + + F+ L + G D ++ DLGVSSMQID Sbjct: 111 AIEIEKTGARLKALGFPEATLRVVRMNFAGLRKALDEAAWSDGADVILADLGVSSMQIDN 170 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFSF+ GPLDMRM+ G+ A +++ + +V LT +L +E + +A A+ + Sbjct: 171 PARGFSFKSDGPLDMRMNPLRGVPARELLRKISVPKLTALLEENADETNSILLAAALAGQ 230 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + + + + + + R FQALRI VN+E L LR AL Sbjct: 231 DFAKTPTLAAAVKRALPR--HLDEEEVTATTRRVFQALRIAVNDEFGALDSFLRVLPTAL 288 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG + V++FHS EDR VKK F + S F +I+ +V P+ E+ Sbjct: 289 RPGGRVAVLTFHSGEDRRVKKAFLAGSRDGT--------------FSAISDEVQRPSPEE 334 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+ SAKLR +R Sbjct: 335 IRLNTRAASAKLRWAVR 351 >gi|255026327|ref|ZP_05298313.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-003] Length = 227 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++ VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 +L +I+ + ++ HP R+FQA+RI VN+E+ + L Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSL 224 >gi|87309877|ref|ZP_01092011.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM 3645] gi|87287641|gb|EAQ79541.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM 3645] Length = 262 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 151/281 (53%), Gaps = 27/281 (9%) Query: 45 FGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 G GG++R + + VIA DRD A+ ++++R + + F +L + D Sbjct: 1 MGGGGHTRQLAERVGDEGLVIACDRDLAAIERAEQSLRGLPIKVTQRN--FCELPSVLQD 58 Query: 102 ---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLT 157 +DG++ DLG+SS Q+ +RGFSF GPLD+R G +A+D+VN + KDL Sbjct: 59 LEIDLIDGLLLDLGLSSDQLADRNRGFSFDSDGPLDLRFDETEGDTAADLVNLLSEKDLA 118 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQA 216 ++ GEE+ + RIA + RR+ PF DL+ L+ RIHPATR+FQA Sbjct: 119 DVIYQNGEERLSRRIAKKVCLRRKEKPFLLASDLAELVTSCYPGRGARERIHPATRTFQA 178 Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 LRI VN E+ L L+SA ++ GG + V+SFHSLEDR VK+ F Sbjct: 179 LRIAVNRELSSLESILKSAPDFIRPGGKIAVISFHSLEDRRVKEAFREDE---------- 228 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + +TKK ++P++E++ N RSRSAKLR R Sbjct: 229 -------RLEPMTKKPIIPSEEEIMRNPRSRSAKLRVARRV 262 >gi|327281892|ref|XP_003225679.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Anolis carolinensis] Length = 395 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 166/323 (51%), Gaps = 38/323 (11%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L+ + ILD TFGAGG++++ + + ALDRDP A Q Y +Q Sbjct: 72 LSNRHMECILDMTFGAGGHTKALLQKEMDIKLYALDRDPTAYELAQRLSDSYTQQIQPLL 131 Query: 90 ATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CS 140 FSQL+ V +DGV+ D G SSMQ+D +RGFS +K GPLDMRM Sbjct: 132 GQFSQLEALLTSAGVQPGNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPD 191 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 +A+DVVN + + L IL + GEE+ A +IA AIV+ R P TQ L+S++ Sbjct: 192 MPTAADVVNALDQQALASILRMYGEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFP 251 Query: 201 FSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + H AT++FQALRIFVNNE+ EL GL++AEK LK GG + +SFHS Sbjct: 252 DVALYARKDLLHRPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPGGRFVALSFHS 311 Query: 253 LEDRLVKKFF-----------ASRSGKVMAVRHMIPSNAHPA--------VFQSITKKVV 293 LEDR++K+F + R R + +I KKV+ Sbjct: 312 LEDRIIKRFLLGIDISEKFNLSVRQKIKQMGRDFSELEEEDEFSNGNVNLKWIAIQKKVL 371 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P +D+ N R RSAKLR ++ Sbjct: 372 TPQAKDLQDNPRGRSAKLRGAIK 394 >gi|169839498|ref|ZP_02872686.1| S-adenosyl-methyltransferase MraW [candidate division TM7 single-cell isolate TM7a] Length = 339 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 153/306 (50%), Gaps = 25/306 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL + L P P + LD T G GG++ +F S+ + +DRD A++ E Sbjct: 18 HVPVLLSASLDLFKPQPKERYLDLTAGYGGHAEAFLNKTQSYSSAVLVDRDENAIA---E 74 Query: 77 TMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 R +L A F + D ++ DLGVSS Q+D GDRGFSF GPLD Sbjct: 75 LGRFSALGATLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQLDNGDRGFSFMYDGPLD 134 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM SA+D+VN + L IL GEE+ A I T + Sbjct: 135 MRMDQRQKFSAADIVNSYPKQKLIEILVRYGEER--LSFAKRIADEIYKRRPFTKTSELA 192 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + ++ +IHPATR+FQALRI VN E+ ++ L + L +GG + ++SFHSL Sbjct: 193 KMIVEIHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQLLNSGGRVGIISFHSL 252 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-VPTQEDVAFNRRSRSAKLR 312 EDRLVK+FF SG + + + + KK + T + A+N RSRSAKLR Sbjct: 253 EDRLVKRFFKDNSGL-----------SFESELELLNKKPLDGATYD--AYNPRSRSAKLR 299 Query: 313 AGMRTV 318 ++ Sbjct: 300 GALKNK 305 >gi|322379450|ref|ZP_08053820.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1] gi|322380939|ref|ZP_08055005.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5] gi|321146611|gb|EFX41445.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5] gi|321148159|gb|EFX42689.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1] Length = 303 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 146/320 (45%), Gaps = 35/320 (10%) Query: 4 KSCKTMSSAIHHTIGD--HVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKM 57 + M + G H VLLE+V+A+ V++D T G GG++ + + Sbjct: 5 DRTRLM--PMQPIKGKFLHQSVLLEEVVAIFQEVIQSHSEPVLIDCTLGLGGHTLALLQT 62 Query: 58 GS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVS 114 V+ ++RD A E + + +FS F+ + + + + GV+ DLGVS Sbjct: 63 YPNLRVVGIERDKEASEQALEKLTPFAHRFSFKSGNFATILPSLLKENRICGVLADLGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 S+Q+D DRGFSF + AS V+N + L +IL GE ++A+ Sbjct: 123 SLQLDHLDRGFSFNAPTLDMRMDIDQSLDASKVINTYSAYALEKILQA-GEVYAPKKMAN 181 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV+ R S++++ HPAT FQA+R+ VN+E+ L Q L Sbjct: 182 LIVQNRPF------YSAKDFADFISQHSRHSKHHPATLIFQAIRMEVNSEMHNLDQLLEC 235 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 + ++ ++SFHSLEDR VK F + + KK ++ Sbjct: 236 VQ--SLKEAIVCIISFHSLEDRKVKHAFKEWAQNRGV---------------LLFKKPII 278 Query: 295 PTQEDVAFNRRSRSAKLRAG 314 P+++ + NRR+RSAK+RA Sbjct: 279 PSKKAIQENRRARSAKMRAF 298 >gi|321310206|ref|YP_004192535.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str. Langford 1] gi|319802050|emb|CBY92696.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str. Langford 1] Length = 301 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 + ++V++ L + + LD TFGAGG+SR S +I LD D AV G++ + Sbjct: 1 MSDEVVSYLLGSKDGLYLDCTFGAGGHSRQLLSKISSQSKLIGLDIDSVAVEMGKK-LEQ 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++FS+ + F++L DY + + ++FDLG S MQ+ RGFS+ + LDMRM Sbjct: 60 EDDRFSMVRLNFARLSDYQKENNLPKARGIIFDLGTSMMQLRDPSRGFSYLEDAHLDMRM 119 Query: 138 SCSGISA-SDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLSSLI 195 + + +D++N + L I G+ + R+ + I R++ + +TT + LI Sbjct: 120 DQTSKTTAADILNYGSRMQLKDIFRKYGDIHNSDRLINLISDHRKKYSCIETTLEFRDLI 179 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ R +R+FQA+RI VN+EI+ + S + L+ GG+ +++FHS E Sbjct: 180 EEAHKKLDPVRLRKEISRTFQAIRIAVNDEIKSFEMAMNSLHEVLEVGGVACIITFHSGE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + ++K + + + + S F+ ++ +VPT++++A NR SRS+KL Sbjct: 240 EDVLKTWKSKYCDHIEIRDY---SKNMVNKFRFVSNGYIVPTEKEIAENRSSRSSKLWVF 296 Query: 315 MRTVE 319 + + Sbjct: 297 QKVRD 301 >gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] Length = 434 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 154/351 (43%), Gaps = 62/351 (17%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGG-------------YSRSFCKMGSNVIAL 64 HVPV+L +V+ + + + +D T GA G + + + Sbjct: 93 SSHVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKHF----------VGM 142 Query: 65 DRDPFAVSCGQETMRDYKEQ----------FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 D DP A G + F ++ + Q + D GVDG++ DLG+S Sbjct: 143 DVDPVARKLGHFHIDSLMHPTLKASIVLKNFKYIKSVVADTQPELLDVGVDGILMDLGMS 202 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ++ RGFS + GPLDMRM +A D+VN +L R+L GEE + Sbjct: 203 SMQVNNPQRGFSVLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWHLLQ 262 Query: 174 HAIVKRRQSAPFQTTQDLSSL---IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IVK R + +T +L L + + I ATR FQ LRI VN+E++ L Sbjct: 263 TRIVKARLNGGLHSTGELVDLIRGMSPAGRGGRQGWIKTATRVFQGLRIAVNDELKTLQN 322 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNA 280 L S+ L GG L V+SFHSLEDR+VK+ F + G + I Sbjct: 323 SLYSSFDVLGPGGRLAVISFHSLEDRVVKQTFLNILGFQREEINGEGNSVKPERQIEERV 382 Query: 281 HPAVFQ---------------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + +TK+ + P++E+ NRR+RSAKLR + Sbjct: 383 EKELKEKEAWIKQTVIGSKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433 >gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana] gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana] gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana] gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana] gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana] Length = 434 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 157/341 (46%), Gaps = 42/341 (12%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74 HVPV+L +V+ + + + +D T GA G+S S + S + + +D DP A G Sbjct: 93 SSHVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLG 152 Query: 75 QETMRDYKEQ----------FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + F ++ + Q + D GVDG++ DLG+SSMQ++ +RG Sbjct: 153 HFHIDSLMHPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERG 212 Query: 125 FSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS + GPLDMRM +A D+VN +L R+L GEE + + IVK R + Sbjct: 213 FSVLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNG 272 Query: 184 PFQTTQDLSSLIQ---KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +T +L LI+ + I ATR FQ LRI VN+E++ L L S+ L Sbjct: 273 GLHSTGELVDLIRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLA 332 Query: 241 AGGLLIVVSFHSLEDRLVKKF------FASRSGKVMAVRHMIPSNAH------------- 281 GG L V+SFHSLEDR+VK+ F Sbjct: 333 PGGRLAVISFHSLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEW 392 Query: 282 ------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +TK+ + P++E+ NRR+RSAKLR + Sbjct: 393 IKQTVIASKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433 >gi|5834377|gb|AAD53943.1|AF179611_27 conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 276 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 108/262 (41%), Positives = 156/262 (59%), Gaps = 6/262 (2%) Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +R Sbjct: 1 DPDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPER 60 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFS Q GPLDMRM+ +G+SA +++N A KD+ +L + GEE+Q+ R+A AIV+ +A Sbjct: 61 GFSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIVR--GTA 118 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G Sbjct: 119 FKRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKG 178 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L VV+FHSLEDR+VK F +G+ RH VF S + V + ++A Sbjct: 179 CLAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELAR 238 Query: 303 NRRSRSAKLRAGMRTVERSIED 324 N R+RSA LRA RT ED Sbjct: 239 NPRARSATLRAVYRTETPFSED 260 >gi|330902009|gb|EGH33332.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 263 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 98/263 (37%), Positives = 153/263 (58%), Gaps = 9/263 (3%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSM 116 ++ D+DP A++ GQ + +F + Q +F++L ++ V G++ DLGVSS Sbjct: 1 LLGFDKDPQAIATGQA-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSP 59 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFSF GPLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A Sbjct: 60 QLDDPERGFSFMNDGPLDMRMDPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANA 119 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +V RR+ PF+ T DL+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A Sbjct: 120 VVARREVQPFERTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAA 178 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVV 293 AL+ GG L+V+SFHSLEDR+VK F + G+ + +P P + I K Sbjct: 179 LDALEVGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQ 238 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + + N RSRSA +R + Sbjct: 239 FASDVETKANPRSRSAVMRVAEK 261 >gi|290989161|ref|XP_002677211.1| predicted protein [Naegleria gruberi] gi|284090817|gb|EFC44467.1| predicted protein [Naegleria gruberi] Length = 300 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 161/308 (52%), Gaps = 48/308 (15%) Query: 40 ILDATFGAGGYSRSFCKM--GSNVIALDRD----PFAVSCGQETMRDYK-EQFSLFQATF 92 +DATFGAGGY+R + G VI +D D P + ++ E+ + F Sbjct: 18 FIDATFGAGGYTREILRAYPGCKVIGIDTDYYNNPTIKENEKLIHEEFGKERLEVHCVNF 77 Query: 93 SQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141 +++ V + +DG+VFDLGVSSMQ+D G RGFSF + G Sbjct: 78 REIKKVVQEKIVPQLKSDTSNVIDGIVFDLGVSSMQLDQGHRGFSFLRE----------G 127 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVY 200 A DVVN + DL ++ GE+ +A RIA AIV R + PF+TT +L++LI+K Sbjct: 128 PLARDVVNNMSELDLRIMITKFGEDDKAYRIAKAIVDYRNNVKPFETTLELANLIEKITP 187 Query: 201 FS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA-GGLLIVVSFHSLEDRL 257 F K RIHPAT++FQA+RIFVN+E+ L L +++ LK G L+VVS+HSLEDR+ Sbjct: 188 FHERKKKRIHPATKTFQAIRIFVNDELSALQNALYASKDILKIGTGRLVVVSYHSLEDRI 247 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K F F+ ITK ++P +V FN RSRSAKLR R Sbjct: 248 TKDFMKENQDS----------------FKKITKGTIIPDDAEVEFNVRSRSAKLRCAQRV 291 Query: 318 VERSIEDD 325 ++D Sbjct: 292 ENNRTDED 299 >gi|219128094|ref|XP_002184257.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404488|gb|EEC44435.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 290 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 142/291 (48%), Gaps = 24/291 (8%) Query: 40 ILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +D T G GG+S + + G V D DP A++ E + L Sbjct: 2 FIDGTLGGGGHSAALLQRLQPGDVVFGCDVDPAALATASERTGNDATT---------NLV 52 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQAN 152 GVDG++ DLGVSS QID +RGF+F K GPLDMRM +G++A+D+ N+ + Sbjct: 53 LPPTCPGVDGILLDLGVSSHQIDTAERGFAFMKDGPLDMRMGQQNLHTGLTAADICNEFD 112 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS--LIQKTVYFSKNNRIHPA 210 +L RIL G+E +A IAH+IV+ R + S + Q + R+ Sbjct: 113 EVELRRILKTYGDEPRAKSIAHSIVQSRPLQTTNDLVEAVSAVVPQFARKGKRLGRMSTL 172 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKAL-KAGGLLIVVSFHSLEDRLVKKFFAS---RS 266 R FQ+LRI VN E + L Q L L + GG L+V+S+ S+EDR K+ R Sbjct: 173 ARVFQSLRIVVNQEDKVLEQALVDMAPTLLRPGGRLVVLSYQSMEDRSTKRVMRDGMTRK 232 Query: 267 GKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + M + P F ++ K+ T+E++A N R+RSA LR R Sbjct: 233 KTHSDEKDMYGNYCGAPRPFLALGKR-QKATEEEIAGNPRARSATLRVAER 282 >gi|58696920|ref|ZP_00372421.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila simulans] gi|58536850|gb|EAL60058.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila simulans] Length = 251 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 104/261 (39%), Positives = 151/261 (57%), Gaps = 17/261 (6%) Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 V A+DRD + Y ++ LF FS +++ + + DG+VFD+GVSSM Sbjct: 2 QVYAIDRDETVTKFYDDLSVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSM 61 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D GDRGFSF GPLDM M S +AS VN +++ + G E+ + +IA A Sbjct: 62 QLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARA 121 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 IV R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+++A Sbjct: 122 IVNARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAA 180 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G LIVV+FHSLEDR+VK FF F + KKV+ Sbjct: 181 SEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVIEA 228 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 229 SIEEVSANPRSRSAKLRAIQR 249 >gi|258614830|ref|ZP_05712600.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO] Length = 234 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 3/217 (1%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162 VDG+++DLGVSS Q+D +RGFS+ + PLDMRM S +SA V+N+ + +L +I Sbjct: 13 VDGILYDLGVSSPQLDEAERGFSYHQDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFR 72 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFV 221 GEEK + +IA I + R++ P QTT +L +I++ + + HPA R FQA+RI V Sbjct: 73 YGEEKFSKQIAREIERVRKTKPIQTTGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAV 132 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNA 280 N+E+ L A + LK G + V++FHSLEDR+VK F S + + + + Sbjct: 133 NDELGAEEASLEQAIRLLKVNGRISVITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDE 192 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + IT+K ++P++E++ N RSRSAKLR + Sbjct: 193 FQPELKVITRKPILPSEEELTENNRSRSAKLRIAEKI 229 >gi|260826594|ref|XP_002608250.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae] gi|229293601|gb|EEN64260.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae] Length = 280 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 20/235 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PV++ +V+ L+P PG+V +D TFGAGG++++ + V A+DRDP A + Q Sbjct: 2 PHTPVMVREVLDCLDPQPGQVYVDMTFGAGGHTKAILAAQPDTVVYAIDRDPAAHNMAQN 61 Query: 77 TMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + FS+L V + VDG +FD+G SSMQ D G RGFS + G Sbjct: 62 IAKQYGKSIRPVLGRFSELLYLLSSQNVQENTVDGFLFDVGASSMQFDQGGRGFSLSQDG 121 Query: 132 PLDMRMS-----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM +A+DVVN DL I+ GEEK A +I+ AIV R P Sbjct: 122 PLDMRMDGERFGNKQPTAADVVNSLGEDDLYGIIKTYGEEKHARKISSAIVDARNKIPIT 181 Query: 187 TTQDLSSLIQKTV--------YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 TT+ L+ ++ + + N +HPAT++FQALRIFVN+E+ EL QGL+ Sbjct: 182 TTKQLAGVVASALAPPGVFFAHDKLNRAVHPATKTFQALRIFVNDELNELYQGLQ 236 >gi|302518535|ref|ZP_07270877.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78] gi|302427430|gb|EFK99245.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78] Length = 293 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 101/249 (40%), Positives = 147/249 (59%), Gaps = 10/249 (4%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 G HVPV+L + + LL PA PG V++D T G GG+S + ++ALDRD A Sbjct: 27 AEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEA 86 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + E+ L A + +L D + V G++FDLGVSSMQ+D DRGF++ Sbjct: 87 LRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAY 146 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 147 AQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFA 206 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + Sbjct: 207 RSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRI 266 Query: 246 IVVSFHSLE 254 V+++HSLE Sbjct: 267 AVLAYHSLE 275 >gi|311087661|gb|ADP67740.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 271 Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 106/271 (39%), Positives = 162/271 (59%), Gaps = 16/271 (5%) Query: 55 CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFD 110 + ++DRDP A S G + +F + FS+L D+ ++ + +G++FD Sbjct: 4 LGQSGRLYSIDRDPIAFSIGSKIK---DSRFHIINENFSKLLDFAKNEKIIGKVNGIIFD 60 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS+QID RGFSF+ GPLDMRM GISAS+ + ++NVK+++ +L GEE+ + Sbjct: 61 LGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFS 120 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA+AI +R Q +T +L+++I+KT+ KN HPA RSFQA+RI++N E+EE+ Sbjct: 121 RKIAYAIKRRSQIKKITSTLELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQ 179 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAV 284 + L + K LK GG + ++SFHSLEDRLVKKF S K + M + Sbjct: 180 KALENTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCK 239 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + I + ++PTQ ++ N R+RS+ LR Sbjct: 240 LKIINR--ILPTQNEINNNPRARSSVLRIAE 268 >gi|307297403|ref|ZP_07577209.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium mesG1.Ag.4.2] gi|306916663|gb|EFN47045.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 148/293 (50%), Gaps = 25/293 (8%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H V++ + + L +D T G GG+ R+ + + +I LD D ++ + Sbjct: 9 HRSVMIHEALHYLLGGRLTGTYIDCTAGEGGHIRAMLEATEGQAKIIGLDVDSEVLNIAE 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++DY+E LF ++ + + + VDG + D+GVS+ Q+ RGFS++ P Sbjct: 69 QNLKDYRESVELFNLSYVDFEIALRQAGVEKVDGFLLDVGVSTFQLKAKGRGFSYELDEP 128 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ +A+DVVN +L+RI+ G+EK+ +IA +IV RR + D Sbjct: 129 LDMRMNLSQKRTAADVVNSYREDELSRIIFEFGDEKRFARKIARSIVSRRPLFTTKDLHD 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 K R H AT++FQA+RI VN E+E + LR L GG ++++SF Sbjct: 189 AIKAAIPPAERYKRRR-HFATKTFQAVRIEVNQELENIESTLRKIPGFLNQGGRIVIISF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 HSLED + K+ F +S + + +TKK V P++E+V N Sbjct: 248 HSLEDGIAKRVFREKS---------------ESELKILTKKPVQPSKEEVELN 285 >gi|296124253|ref|YP_003632031.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] gi|296016593|gb|ADG69832.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] Length = 378 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 159/315 (50%), Gaps = 28/315 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H P+++++++ +L P G+ +D T G GG+++ + ++ +D DP + Sbjct: 77 GTHRPIMVDEILQVLAPQAGERGIDCTLGFGGHAQQLLRAIQPDGCLLGIDADPIELPKT 136 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + +R E + + F+ L +P D ++ DLG+SSMQID RGF+F+ Sbjct: 137 EARLRSAGFPAETLMVQRTNFAALPGLIPAFLPGGADFLMADLGLSSMQIDDPARGFTFK 196 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ G SA++ + + + + L ++L +E A +A ++ +Q + F T Sbjct: 197 VDAPLDMRMNPSRGPSAAEFLAKIDERGLAKLLEDAADEPCAEPLARGLITAQQISAFIT 256 Query: 188 TQDLSSLIQKTVYF----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T L+ +++ + + + R FQA+RI VN+E L L+S + +K GG Sbjct: 257 TGQLAEAVRRVLATIGSLDEEDVSSTIRRVFQAIRIAVNDEFSTLDILLKSIPQCVKPGG 316 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDR VKK F + V++ I+ +V+ T ++ N Sbjct: 317 RIAILTFHSGEDRRVKKAFQAGLASG--------------VYREISSEVMRATPQERHDN 362 Query: 304 RRSRSAKLRAGMRTV 318 RS AKLR +R+ Sbjct: 363 PRSIPAKLRWAIRSS 377 >gi|218508691|ref|ZP_03506569.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5] Length = 227 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 123/227 (54%), Positives = 157/227 (69%), Gaps = 1/227 (0%) Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 MQ+D +RGFSFQK+GPLDMRMS +G+SA+DVVN+A V DL RI LGEE QA RIAHA Sbjct: 1 MQLDEAERGFSFQKNGPLDMRMSATGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHA 60 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I KRR PF+TT+DL+ LI+ ++IHPATR FQALRIFVN+E+ ELAQ L +A Sbjct: 61 IEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAA 120 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 E LK GG L+VV+FHSLEDR+VKKFF+ R+GK RH+ ++ A F ++ K +V Sbjct: 121 ETVLKPGGRLVVVTFHSLEDRIVKKFFSDRAGKASGSRHLPAAHERAATFTTVGKSMVSA 180 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQFRG 341 ++ + N R+RSAKLRAG RT + D S P L +L + G Sbjct: 181 SEAEAESNPRARSAKLRAGQRTAAAAEAADMSLFGFPNLASLGKLGG 227 >gi|13537286|dbj|BAB40632.1| hypothetical protein [Listonella pelagia] Length = 189 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 11/179 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K GPLDMRM + G+ S + A + D+T ++ GE+K A RIA IV R++ + Sbjct: 120 KDGPLDMRMDPTSGMPVSQWLMDAELDDITWVIREFGEDKHARRIAKGIVAYRENEENE 178 >gi|145349365|ref|XP_001419106.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579337|gb|ABO97399.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 254 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 122/255 (47%), Gaps = 11/255 (4%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H P +L + IA L P V +D TFG GG++R + A D DP A+ G+ Sbjct: 1 HTPAMLAETIAALVAPDRSGVYVDGTFGRGGHTRGILAALSAEGRLHAFDMDPEAIKVGK 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E + +F + A F + D + GV DLG+SS Q D RGF ++ GPL Sbjct: 61 E-LEREDSRFKIHHAPFGCMADVLRPLGVKPSGVFLDLGISSPQFDDSSRGFRPEQDGPL 119 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQSAPFQTTQ 189 D+R G+ AS+ + + ++L R++ GE RI AIV R++ +T Sbjct: 120 DLRFDVERGVPASEYLRLVSREELRRVIHEYGETTDPIAARRITDAIVLARENGSLPSTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + + + +HPA +FQALRI +N E +E+ +G+ +A + G L +++ Sbjct: 180 KEFAALVAKAKGKEYQMMHPAKLTFQALRIALNQEFDEMRRGMHAAFDIMPEHGRLGILT 239 Query: 250 FHSLEDRLVKKFFAS 264 + E +V FF Sbjct: 240 WKHSECAIVVDFFRD 254 >gi|67969111|dbj|BAE00910.1| unnamed protein product [Macaca fascicularis] Length = 450 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 115/362 (31%), Positives = 175/362 (48%), Gaps = 75/362 (20%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKV---------------------------------IL 41 T+ H+PV++++V+ L+P G++ L Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFL 126 Query: 42 DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 D TFG+GG++++ + S+ + ALDRDP A + + Y ++ FSQ + + Sbjct: 127 DMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKKIRAVLGQFSQAEALL 186 Query: 100 PD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQ 150 DGV+ DLG SSMQ+D +RGFS +K GPLDMRM +A+DVVN Sbjct: 187 TKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNA 246 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK-- 203 + L IL GEEK A +IA AIV+ R P TQ L+S+ +Y K Sbjct: 247 LDQPALASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDL 306 Query: 204 -NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHSLEDR++K+F Sbjct: 307 LQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366 Query: 263 -------------ASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQE---DV 300 + K + + P +++ I KK + +++ ++ Sbjct: 367 LGISMTERFNLSVRQQVMKTSQLGSGHENTEEVSMRRAPLMWELIHKKALFKSEQSYREI 426 Query: 301 AF 302 Sbjct: 427 RI 428 >gi|161870663|ref|YP_001599836.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 053442] gi|161596216|gb|ABX73876.1| S-adenosyl-methyltransferase mraW [Neisseria meningitidis 053442] Length = 264 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 95/253 (37%), Positives = 139/253 (54%), Gaps = 6/253 (2%) Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ + F+ Q + VDG +FDLG+SS QID G RGFSF+ P Sbjct: 3 EELARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAP 62 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L Sbjct: 63 LDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKL 122 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FH Sbjct: 123 AQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFH 181 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F S R A P I + + P + ++A N R+RSA Sbjct: 182 SLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAV 241 Query: 311 LRAGMRTVERSIE 323 LR RT E Sbjct: 242 LRVAERTAGPIPE 254 >gi|297268190|ref|XP_002799639.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 2 [Macaca mulatta] Length = 452 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 158/300 (52%), Gaps = 53/300 (17%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKV---------------------------------IL 41 T+ H+PV++++V+ L+P G++ L Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFL 126 Query: 42 DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 D TFG+GG++++ + S+ + ALDRDP A + + Y +Q FSQ + + Sbjct: 127 DMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAVLGQFSQAEALL 186 Query: 100 PD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQ 150 DGV+ DLG SSMQ+D +RGFS +K GPLDMRM +A+DVVN Sbjct: 187 TKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNA 246 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL-----IQKTVYFSK-- 203 + L IL GEEK A +IA AIV+ R P TQ L+S+ +Y K Sbjct: 247 LDQPALASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDL 306 Query: 204 -NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHSLEDR++K+F Sbjct: 307 LQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366 >gi|71031997|ref|XP_765640.1| S-adenosyl-methyltransferase mraW [Theileria parva strain Muguga] gi|68352597|gb|EAN33357.1| S-adenosyl-methyltransferase mraW, putative [Theileria parva] Length = 389 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 50/294 (17%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+PV+L++ + L P + LD T G GG++ + +I++DRDP +V + Sbjct: 72 EHIPVMLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRLNPKGKLISIDRDPESVYFNR 131 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKGVD---------------------------- 105 + ++ Y E + S+ FS + D + + Sbjct: 132 KRLKSYIEESRLSVEIGKFSGIIDLLKSHKLPTEGYTGFFLPILLFKLVISTLYLLYKEF 191 Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS----------------GISASDVVN 149 +V DLG+S+ Q++ RGFS+ K+GPLDMRMS +A +VN Sbjct: 192 RIVADLGLSTHQLENSKRGFSYMKNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVN 251 Query: 150 QANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208 +++ L +I G+E +A+ IA I KRR +T+ L S++ ++ +++ Sbjct: 252 KSDESTLRKIFKEFGQEPRAASIAKKIIEKRRILGEIDSTEKLKSVVMDSLPMFHRSKMR 311 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +R FQALRI VN+E+ EL+ L + LK G + +S+H+LEDRLVK F Sbjct: 312 TLSRIFQALRIKVNDELNELSSFLNFIPQLLKYNGRFVCISYHALEDRLVKNSF 365 >gi|213025088|ref|ZP_03339535.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 165 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 11/166 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIA 165 >gi|145627903|ref|ZP_01783704.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] gi|144979678|gb|EDJ89337.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] Length = 223 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 16/225 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + ++G++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAPFQTTQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIF 220 +SA T+ LS Q K+ HPATRSFQA+RIF Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPFKDKHKHPATRSFQAIRIF 222 >gi|304163|gb|AAC36835.1| Putative product of orfB has significant sequence identity to putative product of orfB sequence upstream of pbpB gene in E.coli. putative [Bacillus subtilis] Length = 204 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 111/202 (54%), Gaps = 3/202 (1%) Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+ PLDMRM S SA +VVN+ +DL RI GEEK + +IA I Sbjct: 1 LDTPERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKI 60 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + R +P QTT L LI+ + + + HPA R FQA+RI VN+E+ + L A Sbjct: 61 EEARMKSPIQTTGQLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQA 120 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVV 294 + LK GG + V++FHSLEDR+ K F +S + + IT+K + Sbjct: 121 IEVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPIT 180 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 +QE++ N R+RSAKLR + Sbjct: 181 ASQEELEENNRARSAKLRIAEK 202 >gi|258539486|ref|YP_003173985.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705] gi|257151162|emb|CAR90134.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705] Length = 214 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 98/209 (46%), Gaps = 7/209 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D + VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQAL 217 L LI+ + ++ HPA +S Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKSLSGY 210 >gi|254671182|emb|CBA08306.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha153] Length = 249 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 5/235 (2%) Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQ 150 F + G+SS QID G RGFSF+ PLDMRM G+SA++ + Sbjct: 7 FRRHWTVWVSARWTVRCLIWGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAV 66 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210 A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ + V + PA Sbjct: 67 ASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRT-RERGQDPA 125 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 TR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F S Sbjct: 126 TRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAP 185 Query: 271 AVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 R + ++ + + + + P + ++A N R+RSA LR RT E Sbjct: 186 LPRWAAVREADLPEPPLKIVGR-ALKPGEAEIAANPRARSAVLRVAERTAGPIPE 239 >gi|328773130|gb|EGF83167.1| hypothetical protein BATDEDRAFT_21617 [Batrachochytrium dendrobatidis JAM81] Length = 434 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 41/294 (13%) Query: 16 TIGDHVPVLLEKVIALLNP----------------APGKVILDATFGAGGYSRSFCKM-G 58 T DH PVLL V+ +L+P ++I DATFG GGY+++ Sbjct: 49 TKPDHKPVLLVPVVDILSPEFDLQSRERQSQRVRFQRPRLICDATFGNGGYTKALLDKMD 108 Query: 59 SNVIALDRDPFAVSCGQE--TMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFD 110 V +D+DP A+ + +YK + FS +Q+ + + +DG+VFD Sbjct: 109 CKVFCVDQDPLAIERAMDMSLKPEYKNRLIPIHGKFSDIQNLIAPYTASHEACLDGIVFD 168 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170 +G+SS Q+D RGFSF+K GPLD DL RIL GEEK A Sbjct: 169 IGISSNQLDDASRGFSFRKDGPLD----------------YPEMDLVRILQQYGEEKNAY 212 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 +I I R TT L+ +I K V ++ + + + +RI++N+E+++L Q Sbjct: 213 KIVRMIAAIRSKTYINTTTQLAQIIAKAVGKEEHWQQGHKHPAMKTIRIYINDELKQLQQ 272 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 GL AE+ LK G +VV+FHSLEDR+VK+FF + + V P + Sbjct: 273 GLVMAERLLKPDGRCVVVTFHSLEDRIVKRFFQACAQGVTPDELPPPMTQQESR 326 Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F+ E+ + + +A + ++KK +VP ++++ N RSRS Sbjct: 356 GFNPDEELSMDHYTLVTMHDQLASFSAVKETGREPSMIPLSKKAIVPDEKEMQENSRSRS 415 Query: 309 AKLRAGMRTVERSIEDDSF 327 AKLRA RT + + Sbjct: 416 AKLRAARRTNHPTTYTQNL 434 >gi|313106950|ref|ZP_07793153.1| putative methyltransferase [Pseudomonas aeruginosa 39016] gi|310879655|gb|EFQ38249.1| putative methyltransferase [Pseudomonas aeruginosa 39016] Length = 247 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 144/246 (58%), Gaps = 8/246 (3%) Query: 78 MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M +F + Q +F++L D V + VDGV+ DLGVSS Q+D +RGFSF GPL Sbjct: 1 MAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPL 60 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL+ Sbjct: 61 DMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLA 120 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFHS Sbjct: 121 EVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHS 179 Query: 253 LEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + R + + + K ++E++ N RSRSA Sbjct: 180 LEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEEELKANPRSRSAV 239 Query: 311 LRAGMR 316 +R + Sbjct: 240 MRVAEK 245 >gi|205373087|ref|ZP_03225892.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4] Length = 184 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 7/169 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 + +H VLL + + L P + +D T G G+S G ++ A D+D A+ Sbjct: 12 NMFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + Y ++ + ++ F L+ + + GVDG+++DLGVSS Q+D +RGFS+ Sbjct: 72 HAAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHH 131 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 PLDMRM G +SA +VVN+ + + L RI GEEK + +IA + Sbjct: 132 DAPLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKMK 180 >gi|315606646|ref|ZP_07881657.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574] gi|315251656|gb|EFU31634.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574] Length = 380 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 8/239 (3%) Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + F+ ++ F L++++ GVD + + DLGVSS D RGFSF+ PLDMRM+ Sbjct: 145 PQPFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMN 204 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G +A+D+VN+ + L + + GE K + RIA A+VK R +TTQD ++ Sbjct: 205 KRGGRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEP 264 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 F + + FQALRI VNNE+ L + L +A + LK GG L V+++HSLEDR+ Sbjct: 265 --LFRREREKKDMAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRI 322 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK + + + + P F+ + KV+VP ++ N RSRSAKLR + Sbjct: 323 VKNVMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 379 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 I HVPVLL++ + LN PG + +D TFG GG+SR G+++ + D+D Sbjct: 2 IKTAETYHVPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDAD 61 Query: 70 A 70 A Sbjct: 62 A 62 >gi|288925513|ref|ZP_06419446.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17] gi|288337729|gb|EFC76082.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17] Length = 393 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 8/239 (3%) Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + F+ ++ F L++++ GVD + + DLGVSS D RGFSF+ PLDMRM+ Sbjct: 158 PQPFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMN 217 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G +A+D+VN+ + L + + GE K + RIA A+VK R +TTQD ++ Sbjct: 218 KRGGRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEP 277 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 F + + FQALRI VNNE+ L + L +A + LK GG L V+++HSLEDR+ Sbjct: 278 --LFRREREKKDLAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRI 335 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK + + + + P F+ + KV+VP ++ N RSRSAKLR + Sbjct: 336 VKNVMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 392 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 PVLL++ + LN PG + +D TFG GG+SR G+++ + D+D A Sbjct: 2 PVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDADA 53 >gi|119599130|gb|EAW78724.1| hCG2022166, isoform CRA_b [Homo sapiens] Length = 333 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 123/309 (39%), Gaps = 51/309 (16%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RG S Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSL 186 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +K GPLD+RM ++ + + A I + T Sbjct: 187 RKDGPLDIRMDDLLQQSTYIATKTFQ-------------------ALRIFVNNELNELYT 227 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 KT SF +L + +++ + Sbjct: 228 G-------LKTAQKFLRLGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTS 280 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 E+ + P +++ I KKV+ P +DV N R R Sbjct: 281 QLGSDHENTEEVSMRRA-----------------PLMWELIHKKVLSPQDQDVQDNPRGR 323 Query: 308 SAKLRAGMR 316 SAKLRA ++ Sbjct: 324 SAKLRAAIK 332 >gi|15639375|ref|NP_218824.1| hypothetical protein TP0384 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025617|ref|YP_001933389.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum SS14] gi|8134809|sp|O83399|RSMH_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825951|sp|B2S2Y1|RSMH_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3322662|gb|AAC65368.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018192|gb|ACD70810.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum SS14] gi|291059774|gb|ADD72509.1| S-adenosyl-methyltransferase MraW [Treponema pallidum subsp. pallidum str. Chicago] Length = 379 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 150/360 (41%), Gaps = 73/360 (20%) Query: 20 HVPVLLEKVIALLNPA--------------PGKVILDATFGAGGYSRSFCKMGSNVIAL- 64 H PVL+++ + LL PA G +D T G GG++++F + AL Sbjct: 29 HQPVLVQECLTLLEPAIVGISRGADSTRDGAGAFFIDGTLGDGGHTQAFLHAYPALRALG 88 Query: 65 -DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----------------------D 101 + DP ++ + + + ++ Sbjct: 89 VEIDPSMLARARARLTPFGKRLRYVLGWSDVFFASAYASAPASPATGRTAAGAAGVPGAY 148 Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160 V+ DLG+S RGFSF + LDMR+ +A+D++N+ L ++ Sbjct: 149 PAPQAVLLDLGISFFHYRGAMRGFSFAEEHMLDMRLDPQASQTAADLLNRLPQARLAQLF 208 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN-------------NRI 207 GEE+ A RIA A+ +R+ APF + + + ++ + V + ++ Sbjct: 209 FEGGEERYARRIAQAVCAQRRQAPFCSARAFAEVVARVVPPMRTARFGKRRGVLGVLPKL 268 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPAT++FQALRI VN E+E L + L +A AL GG L V+SFHS EDR+VK F + Sbjct: 269 HPATKAFQALRIAVNRELERLPRLLTAAFTALAPGGRLAVISFHSREDRIVKVHFRHWAK 328 Query: 268 KVMAV-RHMIPSNAHPAVFQSITKKVVVPTQED----------VAFNRRSRSAKLRAGMR 316 + R I S A ITKK +VP+ + LR + Sbjct: 329 RCSCPARVPICSCGGVARASLITKKPLVPSCVERAANAASRSAT----------LRVIEK 378 >gi|323455669|gb|EGB11537.1| mraW S-adenosyl-L-methionine-dependent methyltransferase-like protein [Aureococcus anophagefferens] Length = 404 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 27/314 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74 G HVP+++ + + L V +D T G GG+S + G+ ++ +DRD ++ Sbjct: 106 GTHVPIMVAECLEHLRVGDAAVAVDCTLGYGGHSTALVAALPRGARLLGVDRDGEELAKT 165 Query: 75 QETMRDYKE------QFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFS 126 + + + ++ + D + + VD ++ DLG SSMQ+D +RGF+ Sbjct: 166 AARLAEAPRAASGEVTLEQMHSNYAAVGDELARRGLAVDALLADLGCSSMQVDDPERGFT 225 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 +++ GPLDMRM G +A+D + +++ D+ + + A+ RR P Sbjct: 226 YKREGPLDMRMDTSRGETAADWLARSSTADVAAAFRTAADFGKRDARELAVAARRAPTPA 285 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT + + + R+ QALR+ VN+E L L S AL GG Sbjct: 286 TTTAFAERVRGVALEEETADD-DAVKRAMQALRVAVNDEFASLDALLASLPDALAPGGRA 344 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V++FHS EDR VK+ F V+ ++ ++ V + E+ N R Sbjct: 345 VVLTFHSGEDRRVKQAFKK--------------GLAANVYSAVARRPVRASPEERRANSR 390 Query: 306 SRSAKLRAGMRTVE 319 S KLR +R+ + Sbjct: 391 SGCCKLRWCVRSKD 404 >gi|213423591|ref|ZP_03356571.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 237 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 142/238 (59%), Gaps = 9/238 (3%) Query: 90 ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISA 144 FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GPLDMRM G SA Sbjct: 1 GPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSA 60 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN 204 ++ + A D+ +L GEE+ A RIAHAIV+R + P T++L+ ++ K+ Sbjct: 61 AEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEVV-AAATPVKD 119 Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264 HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFHSLEDR+VK+F Sbjct: 120 KFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMRE 179 Query: 265 RSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +S + + A + ++P +++VA N R+RS+ LR RT Sbjct: 180 QSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA 237 >gi|327330609|gb|EGE72355.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL097PA1] Length = 241 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 120/218 (55%), Gaps = 3/218 (1%) Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161 VD V+ DLG+SS QID +RGFS+ PLDMRM S G +A+ ++N+++ L R+L Sbjct: 9 YVDSVLLDLGLSSFQIDEVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLR 68 Query: 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRI 219 GEEK A RI AIV R P +T+ L +I + + + HPA R+FQALRI Sbjct: 69 EYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRI 128 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 VN E+E L L A L GG ++V+S+HSLEDR VK+ F + Sbjct: 129 AVNREMETLPAVLPRALDRLDVGGRIVVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPE 188 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + A F +T+ P ++VA N RS SA+LR R Sbjct: 189 SMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERV 226 >gi|269469017|gb|EEZ80581.1| S-adenosylmethionine-dependent methyltransferase [uncultured SUP05 cluster bacterium] Length = 233 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 133/218 (61%), Gaps = 7/218 (3%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGI 162 +DG++ DLGVSS Q+D RGFSF GPLDMRM G+SA+ + AN ++ +L Sbjct: 14 IDGILMDLGVSSPQLDNAQRGFSFNHDGPLDMRMDQTQGMSAAQWLTSANETEIADVLYQ 73 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222 GEE+++ RIA AI + +Q TT L+++I + KN HPATRSFQA+RIF+N Sbjct: 74 YGEERKSRRIASAIKRYQQDKSIDTTLQLANIIASVIKTQKN--KHPATRSFQAIRIFIN 131 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-- 280 E+++L++ L + L GG L+V+SFHS+EDR+VK+F S + A + + ++ Sbjct: 132 QELKQLSETLDQIIELLACGGRLVVISFHSIEDRIVKQFIQKHSRQKQAPKGLPVMDSEF 191 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + KK ++E++ N+RSRSA LR RT Sbjct: 192 KKTALKDLGKKF--ASKEELQTNKRSRSAILRTAQRTE 227 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 130/232 (56%), Gaps = 4/232 (1%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGI 162 VDG++ DLG+SS QID G RGFSF+ GPLDMRM G +A++ + + K L ++ Sbjct: 13 VDGILLDLGISSPQIDEGVRGFSFRFDGPLDMRMDQSRGKTAAEWLATMSEKQLAEVIRD 72 Query: 163 LGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 GEE+ A ++A AIVK R TT L+ ++ + ++ + +PATR+FQALRIFV Sbjct: 73 YGEERFAKQVARAIVKEREDGHAITTTGQLAKIVAGAIPKNEPGQ-NPATRTFQALRIFV 131 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N E+EEL+ L + L+ G L V+SFHSLEDR+VK+F S + + Sbjct: 132 NQELEELSLVLPDCLQLLRPQGRLAVISFHSLEDRIVKRFIQSEVDRDNLPAGLPVRAKD 191 Query: 282 PAVFQSI-TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332 + + K + P + +VA N RSRSA LR RT + V +P Sbjct: 192 LPQPRLLAVGKAIKPGKAEVAANVRSRSAVLRVAERTQGEAFSRRKVVLMPH 243 >gi|156095737|ref|XP_001613903.1| S-adenosyl-methyltransferase mraW [Plasmodium vivax SaI-1] gi|148802777|gb|EDL44176.1| S-adenosyl-methyltransferase mraW, putative [Plasmodium vivax] Length = 471 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 69/343 (20%) Query: 28 VIALLNPAPG---KVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY 81 ++ L P + +DAT G GG++ K S VIA+D+D ++ Q+ ++ Y Sbjct: 145 SLSRLPPRENPPVEYFIDATLGGGGHTLEMLKKLAPTSKVIAIDKDIESIYYNQQKLQRY 204 Query: 82 --KEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + + + G++ DLG S+ Q+ CG RGFS++ +G L Sbjct: 205 VDANKLTMIHGDYRYIIHLLHRYGLPLFGSYSGILLDLGASTHQLRCGRRGFSYKHNGLL 264 Query: 134 DMRMSCS--------------------------------------GISASDVVNQANVKD 155 DM M +++N + + Sbjct: 265 DMSMDRYTDEEYARMCREGAERGGSGSNGGFQVKQANRANPQTEPPKRIGEILNTYSPQQ 324 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214 L I+ G+EK+AS+IA I + R+S TT L ++ T + +R F Sbjct: 325 LRHIMHTYGQEKKASKIAKKIAQWRKSRGTITTTHQLRDIVLSTCKQNYKANQKVLSRVF 384 Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274 Q+ RI+VN+E++ L + L S+ K L+A L+V+S+HSLE + V++F SR Sbjct: 385 QSFRIYVNDEMKALKEFLLSSYKLLRARKRLVVISYHSLEYQCVERFVHSR--------- 435 Query: 275 MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ I + P++ ++ N+ +RSAK+ + Sbjct: 436 -------KNLWEKINDVDITPSEGELKANKSARSAKMSVFEKV 471 >gi|330981226|gb|EGH79329.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 186 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 9/181 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF G Sbjct: 66 A-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDG 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T D Sbjct: 125 PLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTAD 184 Query: 191 L 191 L Sbjct: 185 L 185 >gi|165377202|ref|NP_689849.2| probable methyltransferase-like protein 15 isoform 2 [Homo sapiens] gi|119588674|gb|EAW68268.1| methyltransferase 5 domain containing 1, isoform CRA_c [Homo sapiens] Length = 273 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 12/192 (6%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSLI 195 P TQ L+S++ Sbjct: 247 PITRTQQLASIV 258 >gi|126643217|ref|YP_001086201.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 223 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 8/221 (3%) Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRIL 160 + VDG++ DLGVSS Q+D +RGFSF + GPLDMRM G++A++ + + +DL I+ Sbjct: 7 QSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEVEEEDLANII 66 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 GEE+ + RIA AI + TT L+ +++ + ++ HPATR+FQA+RI Sbjct: 67 YQYGEERYSRRIARAIKQA---GKLDTTAQLAEIVKTAHPKWEKHK-HPATRTFQAIRIA 122 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +N E++++ L A LK G L V+SFHSLEDRL+K+F S +P Sbjct: 123 INKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQQ 182 Query: 281 -HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 + I++ V ++E+V N RSRSA LR R ++ Sbjct: 183 VDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 221 >gi|21749636|dbj|BAC03631.1| unnamed protein product [Homo sapiens] Length = 273 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 12/192 (6%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +K GPLD+RM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 187 RKDGPLDVRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIY 246 Query: 184 PFQTTQDLSSLI 195 P TQ L+S++ Sbjct: 247 PITRTQQLASIV 258 >gi|118594404|ref|ZP_01551751.1| methyltransferase [Methylophilales bacterium HTCC2181] gi|118440182|gb|EAV46809.1| methyltransferase [Methylophilales bacterium HTCC2181] Length = 213 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 6/215 (2%) Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167 DLG+SS Q+D +RGFSF+ G LDMRM+ +A+D+VN + +L IL + GEE+ Sbjct: 1 MDLGISSPQVDNAERGFSFRLDGQLDMRMNQDHLETAADIVNSYDEAELIYILKVYGEER 60 Query: 168 QASRIAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 A RIA +IV R + T L+ +I K V + + PATR+FQALRI VN EIE Sbjct: 61 FAKRIARSIVAHRADVGRIEKTIQLAQIINKAVPKREPGK-DPATRTFQALRIKVNQEIE 119 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAV 284 E+ + L A L G + V+SFHSLEDR+VK F + + +++ S + Sbjct: 120 EIEKALPIAFDLLNKNGRIAVISFHSLEDRVVKNFAKQQLETDLIPKYIPIKASEIRKSN 179 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 + I K+++P++ ++ N RSRSAKLR R E Sbjct: 180 LKKI-GKLIIPSEIEIKENPRSRSAKLRVIERIEE 213 >gi|323222501|gb|EGA06871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 149 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 11/150 (7%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VAQTI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLT 157 + GPLDMRM G SA++ + A D+ Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLQTAEEADIA 149 >gi|68163389|ref|NP_001020152.1| hypothetical protein LOC295985 [Rattus norvegicus] gi|60551447|gb|AAH91215.1| Similar to RIKEN cDNA 0610027B03 [Rattus norvegicus] Length = 286 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 26/239 (10%) Query: 10 SSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 + H+PV++++V+ L P G+V LD TFG+GG+S++ + + V ALDR Sbjct: 61 EETDSEAMAKLHIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDR 120 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCG 121 DP A + + Y Q FSQ + + VDGV+ DLG SSMQ+D Sbjct: 121 DPVAFTLAERLSEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAP 180 Query: 122 DRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A +IA AI+ Sbjct: 181 ERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAII 240 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R + P TQ L+S++ A F++L + Sbjct: 241 QARSTYPISRTQQLASIV--------------AGTLFKSLCCLRLTSSINMHCMYICIY 285 >gi|223993323|ref|XP_002286345.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977660|gb|EED95986.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 495 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 144/382 (37%), Gaps = 106/382 (27%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM------------------ 78 +D T G GG+S++ + +I D DP A+S + Sbjct: 114 FIDGTLGGGGHSQAILQQLRPCDVLIGCDVDPDALSTASNRLVDYLGTREYILGKSSTVD 173 Query: 79 --------RDYKEQFSLFQATFSQLQDYVPD----------------------------- 101 + + F Q+ F L + + Sbjct: 174 AEEMACQWEEGRPMFIPVQSNFRNLINVLSKVRHPVSGRLLLGSRDDSIGDGQKDAVEFP 233 Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS------------GISASDVVN 149 G +G++ DLGVSS QID G+RGF+F K GPLDMRMS + ++A+D+ N Sbjct: 234 NGANGMLLDLGVSSHQIDTGERGFAFMKEGPLDMRMSGNTPQISTSATIGSSLTAADICN 293 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR-IH 208 + + + IL G+E +A RIA AI+ R + + T K I Sbjct: 294 EFDEPTIIDILSTYGDEPRAKRIASAIIASRPLYTTTDLVHAINSVTPTFARQKRAGLIA 353 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG---------------LLIVVSFHSL 253 + R FQALRI VN E L L + +L V+S+HS+ Sbjct: 354 TSARVFQALRIVVNEEDGALKDVLERVAPWVLCRSGGLMNVGDDEKRDDGILAVLSYHSM 413 Query: 254 EDRLVKKFFASRS-------------------GKVMAVRHMIPSNAHPAVFQSITKKVVV 294 ED++ K+ S G V+ ++ F+ + K Sbjct: 414 EDKMAKRVMRDGSVDFLDGGSKGGSVLERDMFGNVINGDGIVDDAKSHLPFEPV-GKPRK 472 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 T E++A N R+RSA LR G+R Sbjct: 473 ATDEEIAVNSRARSATLRVGIR 494 >gi|56808163|ref|ZP_00365945.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pyogenes M49 591] Length = 215 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + +DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN DL +I GE+K + +IA I + R P + T + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQAL 217 L+ LI+ + + HPA + FQ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQLF 214 >gi|118354992|ref|XP_001010757.1| MraW methylase family protein [Tetrahymena thermophila] gi|89292524|gb|EAR90512.1| MraW methylase family protein [Tetrahymena thermophila SB210] Length = 422 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 35/327 (10%) Query: 14 HHTIGDHVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMGSNVI--A 63 T H PVL++K+ +L + K ++D T G+ G+++ F + + Sbjct: 94 TATNKVHYPVLIDKITQVLQEEFYPHSSSHSEKCLVDCTLGSAGHAKHFLQKFPYLYILG 153 Query: 64 LDRDPFAVSCGQ-----ETMRDYKEQFSLFQATFSQL----------QDYVPDKGVDGVV 108 LD DP + + + +F F+ + +++ K + Sbjct: 154 LDLDPRMLQYINDNVKSQLSHSDQNRFKTRNENFTNIDKINLYKIFEEEFPSYKNFHAIF 213 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEE 166 DLG +++ ++ + GFS+ ++G LDMR + S SA+D++N+A+ +L I+ GE+ Sbjct: 214 ADLGYNTLHLENSEWGFSYLRNGKLDMRYNQSSQTNSAADILNKASYLELFEIIRQYGED 273 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLI--QKTVYFSKNNRIHPATRSFQALRIFVNNE 224 A I+ I+K+RQ PF+TT+D+ LI ++ Y K + T+ FQALRI N E Sbjct: 274 PNADVISQMIIKQRQIKPFETTKDVVDLILEDQSGYSFKGGQYKAITKLFQALRIATNQE 333 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + L + L GL I+++FHSLE+ +V++ I Sbjct: 334 LTNLQVFMDKIYDKLLKDGLGIIITFHSLEENIVEQKLRDLVINRQ-----IEVRKRQKN 388 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKL 311 + + P ++ N +SRSAKL Sbjct: 389 IEILQMG-EKPDINELQKNSKSRSAKL 414 >gi|307108403|gb|EFN56643.1| hypothetical protein CHLNCDRAFT_144447 [Chlorella variabilis] Length = 468 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 94/235 (40%), Positives = 126/235 (53%), Gaps = 22/235 (9%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162 VD ++ DLG+SSMQ+D DRGFSF + GPLDMRM + +SA VN +L R++ Sbjct: 233 VDAILLDLGISSMQVDTADRGFSFLRDGPLDMRMDPAAPLSAELAVNTWPEGELGRVIRE 292 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN---------------NRI 207 GEE+ IA IV R+ AP TTQ L I Sbjct: 293 YGEERHWRGIARRIVAAREEAPITTTQQLVRAIGSPGGGGGGGGGRGRGRRSGGGDARFK 352 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPATR+FQALRI VN E++ +AQ L A + L GG L V++FHSLEDR+VK F + +G Sbjct: 353 HPATRTFQALRIAVNGELQSIAQALPDAIECLAPGGRLAVITFHSLEDRIVKWAFRAAAG 412 Query: 268 ----KVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +P A + +T++ V P++E+ A N RSRSAKLR + Sbjct: 413 MAPSDEQLPSYCLPFEEAAAQASVRILTRRPVAPSEEEQAANVRSRSAKLRVVEK 467 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL +V+A + +D T GA G++ + + +++ D DP A Sbjct: 84 HISVLLSEVLAAFEGRAVRRYVDGTLGAAGHATAMLRQHPELESLVGFDLDPTAHQ 139 >gi|221061767|ref|XP_002262453.1| SAM dependent methyltransferase [Plasmodium knowlesi strain H] gi|193811603|emb|CAQ42331.1| SAM dependent methyltransferase, putative [Plasmodium knowlesi strain H] Length = 507 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 72/345 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY--KE 83 ++L+ + +DAT G GG++ K S V+A+D+D ++ ++ ++ Y Sbjct: 179 VSLMQNTSPEYYIDATLGGGGHTLEILKSFPRTSRVVAIDKDIESIYYSKQKLQCYVDTN 238 Query: 84 QFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ + + + G++ DLGVS+ Q+ CG RGFS+Q +G LDM + Sbjct: 239 KLTMIHGDYRYIIHLLHRHGLPLFGRYSGILLDLGVSTHQLKCGRRGFSYQHNGLLDMSI 298 Query: 138 SCSGISASDVV--------------------------------------------NQANV 153 D + N + Sbjct: 299 DRYTDEEYDRMCRESIEREEGGSNEDYQYDQTNQIKRAKGESPQSEPKKGIGEILNTYSA 358 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + L I+ G+EK+A +IA IV+ R+S+ +TT L ++ T + +R Sbjct: 359 QQLRFIMHTYGQEKKAYKIAKKIVQWRKSSGTIRTTYQLRDIVLSTCKKNYKANQKVLSR 418 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 FQ+ RI++N+E++ L + L S+ K L+A L+V+S+HSLE + V+ F SR Sbjct: 419 VFQSFRIYINDEMKALKEFLLSSYKLLRAKKRLVVISYHSLEYKCVEMFVHSR------- 471 Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ I + P +E++ N+ +RSAK+ + Sbjct: 472 ---------KNLWKKINDVDITPNEEELKANKSARSAKMSVFEKI 507 >gi|330938035|gb|EGH41807.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi str. 1704B] Length = 246 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 92/242 (38%), Positives = 141/242 (58%), Gaps = 8/242 (3%) Query: 82 KEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF GPLDMRM Sbjct: 4 DGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRM 63 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL+ +++ Sbjct: 64 DPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADLAEVLK 123 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR Sbjct: 124 VANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDR 182 Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK F + G+ + +P P + I K + + N RSRSA +R Sbjct: 183 IVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVA 242 Query: 315 MR 316 + Sbjct: 243 EK 244 >gi|124806575|ref|XP_001350761.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7] gi|23496889|gb|AAN36441.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7] Length = 508 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 58/313 (18%) Query: 40 ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95 +DAT G GG++ +I +D+D A+ + ++ + + L + + Sbjct: 207 YIDATLGGGGHTLEILNKIPNCRIIGIDKDIEALYYNKIKLKRFINNNKLKLIHGDYGNI 266 Query: 96 QDYVPD------KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS--------- 140 + G++ DLGVSS Q+ C DRGFS++ +G LDM M+ Sbjct: 267 LHLLHLHSLPIFNYYSGILIDLGVSSHQLKCCDRGFSYKYNGILDMNMNKYTESQYLSKL 326 Query: 141 ---------------------GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +++N ++K L I+ GEEK+A +IA I++ Sbjct: 327 FRNDNEHINDINDIKKNPKNSYNKLHNILNTYSLKKLKFIIDTYGEEKKALKIAKKIIQW 386 Query: 180 RQSAPFQ-TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ TT L ++I T + + +R FQA RI++N E++ L Q L S+ K Sbjct: 387 RKENGMILTTFQLKNIILSTCKQNYKSNNKVLSRVFQAFRIYINQELKTLKQLLISSHKL 446 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK G LIV+++HSLE + V+ F K + V+P+ E Sbjct: 447 LKTGKKLIVITYHSLEKKCVELFIEKNKQKWTKLHQN-----------------VMPSDE 489 Query: 299 DVAFNRRSRSAKL 311 ++ N+ +RSAK+ Sbjct: 490 EIKLNKSARSAKM 502 >gi|328462958|gb|EGF34770.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus MTCC 5462] Length = 231 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 I T H VLL++ A L +DAT G GG++R +IA D+D A Sbjct: 45 IAMTEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAA 104 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ Q +L F L + D + VDGV++DLGVSS Q D RGFS+ Sbjct: 105 IAAVTRQFGTLPPQLTLVHRNFRDLGAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSY 164 Query: 128 QKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 + PLDMRM A VN+ +L RI GEE SR+ + K Sbjct: 165 RFDAPLDMRMDQRQTLDAKTXVNEWPYAELVRIFSRYGEEHFLSRLRVELSK 216 >gi|225166427|ref|ZP_03728086.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2] gi|224799334|gb|EEG17902.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2] Length = 192 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 3/190 (1%) Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 P DMRM G+ AS + A L R + GEE+ A+R+ AI R + T Sbjct: 2 DAPADMRMDPRTGVPASLWLETATDDMLLRAIRDYGEERHATRVVRAIKDARGTGTLSRT 61 Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +IHPATR+FQ +RI +N+E+ L + L +A L++GG+L Sbjct: 62 ASLAELIANAIPARDRFSAKIHPATRAFQGIRIAINDELGALERALPAAFALLRSGGVLA 121 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR VK+ F G+ + P++ + +T+K V P+ +++A N R+ Sbjct: 122 AISFHSLEDRPVKQAFRRFCGQPESHDDHRPADLREKFAEPLTRKPVTPSDDELAANPRA 181 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 182 RSAKLRAIRK 191 >gi|198431221|ref|XP_002121456.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Ciona intestinalis] Length = 343 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 11/176 (6%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAV 71 H+PV+ E++++ LN G VI+D TFGAGG+++ + VIALDRD A Sbjct: 30 SKEAALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRDEKAF 89 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 Q+ + +K + FS+L + + ++ + D G SSMQ D +RGFS Sbjct: 90 EIAQDLSKKFKGRIIPLLGKFSELDKLLSENGIVENSLNAALLDAGCSSMQFDQPERGFS 149 Query: 127 FQKSGPLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 + GPLDMRM + I+A+DVVN + ++LT I+ G+E+ A I+ +I++ Sbjct: 150 LVRDGPLDMRMDGNRSEGQITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIE 205 >gi|226328337|ref|ZP_03803855.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198] gi|225203070|gb|EEG85424.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198] Length = 216 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 120/218 (55%), Gaps = 8/218 (3%) Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS Q+D +RGFSF + GPLDMRM + G SA+ + A D+T +L GEE Sbjct: 1 MLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTSGQSAAQWLMTAEEDDITWVLKTFGEE 60 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A RIA AIV R ++ T + + K HPATRSFQA+RI++N+E++ Sbjct: 61 RFAKRIARAIVARNKTEEPLTRTKQLADLISDASPVKERHKHPATRSFQAIRIYINSELD 120 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA--- 283 E+ + L+ A L G L V+SFHSLEDRLVK+F S + + + A Sbjct: 121 EIEKALKGAVSVLAPEGRLSVISFHSLEDRLVKRFIRDESKGPVVPAGIPLTEAQIKELG 180 Query: 284 --VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 SI K + PT +V N R+RS+ LR R E Sbjct: 181 SARLSSIHK--MKPTGVEVEENPRARSSVLRVAQRIEE 216 >gi|72384693|gb|AAZ67638.1| S-adenosyl-methyltransferase putative [Haemophilus parasuis 29755] Length = 187 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 2/173 (1%) Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-K 203 +VVNQ + + L RI GEEK + +IA I R+ P +TT +L +I++ + + Sbjct: 9 YEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIKEGIPAKAR 68 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 HPA R FQA+RI VN+E+ + A + +K GG + V++FHSLEDRL K+ F Sbjct: 69 RKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLEDRLCKQIFQ 128 Query: 264 SRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R + A+ + + +K + T +D+ N R+RSAKLR Sbjct: 129 EFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRARSAKLRVAE 181 >gi|70953007|ref|XP_745633.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526017|emb|CAH81938.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 318 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 87/337 (25%), Positives = 147/337 (43%), Gaps = 65/337 (19%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMR 79 P+LL + ++DAT G GG++ K + + I++D+D A+ + ++ Sbjct: 6 PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKYKLK 57 Query: 80 DY--KEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Y + L + + ++ DLGVS+ Q+ RGFS++ + Sbjct: 58 SYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYKYNN 117 Query: 132 PLDMRMSCS-------------------------------GISASDVVNQANVKDLTRIL 160 LDM M+ G +++N N+K L I+ Sbjct: 118 ILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLKYII 177 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 GEEK+A +IA I++ R+ T L ++I T + + +R FQA RI+ Sbjct: 178 QKFGEEKKAFKIAKKIIEWRKQNKEIVTTLLKNIILSTCKNNYKSNNKVLSRVFQAFRIY 237 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 VNNE+ L L S+ K LK GG+LIV+S+HSLE++ + F Sbjct: 238 VNNELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFVK----------------N 281 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ I +VPT +++ N+ SRSAK+ A + Sbjct: 282 KTQLWKQINTHPIVPTDQEIKLNKSSRSAKMFAFKKV 318 >gi|38047597|gb|AAR09701.1| similar to Drosophila melanogaster CG14683 [Drosophila yakuba] Length = 251 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 130/244 (53%), Gaps = 18/244 (7%) Query: 37 GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET--MRDYKEQFSLFQATF 92 G D TFGAGG++R + + V ALDRDP A ++ ++K + F Sbjct: 1 GGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKF 60 Query: 93 SQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM---SCSGISA 144 S L + VDG++FD G SSMQ D RGFS + GPLDMRM G++A Sbjct: 61 SDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTA 120 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHA-IVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 +DV+ DL +IL + GEEK A +IA I R +TT+ L+ +I+ + Sbjct: 121 ADVLANVEEGDLVKILRMYGEEKAAKKIARGLIDARNALFKIETTKQLADIIENIMDGGS 180 Query: 204 NNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 H AT++FQA+RIFVNNE+ E+ G+ A + L+ G L+ ++FHSLED +V Sbjct: 181 RKDKLRRHAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIV 240 Query: 259 KKFF 262 K+ Sbjct: 241 KRHI 244 >gi|205355535|ref|ZP_03222306.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346769|gb|EDZ33401.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp. jejuni CG8421] Length = 236 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 5/230 (2%) Query: 88 FQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146 Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS S ISA + Sbjct: 1 MQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYE 60 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 ++N + LT I GE A IA I R P ++ ++L +I K + + Sbjct: 61 IINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGKGKQNHR--K 118 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 I AT +FQA+RI VN E++ L L E +L ++SFHSLEDR+VK+FF S Sbjct: 119 ISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWS 178 Query: 267 GKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 179 KNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRAF 228 >gi|326518102|dbj|BAK07303.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 272 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 122/233 (52%), Gaps = 18/233 (7%) Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRIL 160 GVDG++ DLG+SSMQ++ DRGFS GPLDMRM +A D++N ++ RIL Sbjct: 39 CGVDGILIDLGMSSMQVNRSDRGFSVLNDGPLDMRMDPRATLTAEDILNSWPELEVGRIL 98 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALR 218 GEE + IVK R++ +T +L LIQ+T + + I ATR FQALR Sbjct: 99 RDYGEESNWQSLQRRIVKERKTGGLHSTGELVKLIQRTCTISGGRQGWIKTATRVFQALR 158 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR------SGKVMAV 272 I VN+E+ L L S L G L V+SFHSLEDR+VK+ F G + Sbjct: 159 IAVNDELRTLEDALHSCFDCLATDGRLAVISFHSLEDRIVKQTFLELIHGGEADGDDDDL 218 Query: 273 RHMIPSNAHPAVFQ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + F+ +TK+ + P+QE+ N+R RSAKLR + Sbjct: 219 AYADIDDEDEPWFKQRVQGTNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQK 271 >gi|323445745|gb|EGB02206.1| hypothetical protein AURANDRAFT_69098 [Aureococcus anophagefferens] Length = 335 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 21/240 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNP--APGKVILDATFGAGGYSRSFCKMG---S 59 +C TM ++ G H P + E+ + L P V +D TFG GG++R + Sbjct: 100 TCGTMQAS-----GTHTPAMFEECVEALGVEWNPDGVYVDGTFGRGGHTRKILEKLGPKG 154 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 + D DP AV+ G++ +R +F + A FS + + VDGV+ D+G+SS Q+D Sbjct: 155 TLHGFDMDPEAVAVGEQ-LRGEDPRFVIHHAPFSSMAAVLAGVAVDGVLLDIGISSPQLD 213 Query: 120 CGDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 RGF + GPLDMR A + +A+ +L L G E+ A I Sbjct: 214 G-GRGFKPEVDGPLDMRFDVREGVEDAMGYLRRASRVELAAALEAYGGER--PAAARRIA 270 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGL 232 A + + + HPA +FQALRI VN E EL +GL Sbjct: 271 DAVALAKKDGSLARMTTRPFADLVERAKGKEYQAMHPAKMTFQALRIVVNREYLELERGL 330 >gi|298711101|emb|CBJ32330.1| S-adenosyl-methyltransferase MraW [Ectocarpus siliculosus] Length = 332 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 135/321 (42%), Gaps = 88/321 (27%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82 +V+ L P V +D T G GG+S + VI LDRDP A+ + Sbjct: 4 REVLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAEA 63 Query: 83 E--QFSLFQATFSQLQDYVPDKGVD--------------------------------GVV 108 E +F ++ F+ + V + + G++ Sbjct: 64 EVGRFQAVRSNFAAVGRAVRECELMLQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGIL 123 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-------------------------- 142 DLGVSS QID RGFSF GPLDMRM +G Sbjct: 124 VDLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVE 183 Query: 143 --------------------SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 SA+DVVN A+ ++ ++ G+EK++++IA AI ++ Sbjct: 184 KGGRGEGGGGGDGRGGGGGVSAADVVNFADESEIREMVWRYGDEKRSTKIARAI---VEN 240 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT L+ ++ + + + R FQALRI VN E++ L L A+ ++ G Sbjct: 241 RPIATTGQLAEVVGRCAPPKERVKT--LARVFQALRIEVNGELDALEALLEQAKHLVRPG 298 Query: 243 GLLIVVSFHSLEDRLVKKFFA 263 G L+++S+HSLEDR VK+ A Sbjct: 299 GRLLILSYHSLEDRRVKRVLA 319 >gi|85057932|ref|YP_456848.1| hypothetical protein AYWB_652 [Aster yellows witches'-broom phytoplasma AYWB] gi|84790037|gb|ABC65769.1| conserved hypothetical protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 202 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 8/207 (3%) Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQA 169 +G+SS QID RGFS+ + PLDMRM+ + I+A ++N + L I + GE K A Sbjct: 1 MGLSSCQIDNPQRGFSYLHNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNA 60 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 S + I + P QT+ DL S+ + F + H A + FQALRI VN E+E L Sbjct: 61 SLVVSEI---IKQRPLQTSYDLVSITDR---FCNLQKGHSAKKIFQALRIEVNQELESLK 114 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 Q L + LK ++V+SFHSLEDR++K FF S V+ + + + IT Sbjct: 115 QALEQSLDLLKPNARIVVISFHSLEDRIIKHFFKKHSTFVL-PKKLPIAIIPQTPLSIIT 173 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 KK +P++E++ N RS SAKLR ++ Sbjct: 174 KKAFLPSEEEMQNNSRSISAKLRVAVK 200 >gi|167752871|ref|ZP_02424998.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216] gi|167659940|gb|EDS04070.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216] Length = 183 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 99/180 (55%), Gaps = 4/180 (2%) Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G +A+D+VN + LTRILG GE ++A IV+ R + P TT DL + + Sbjct: 5 QRGGGTAADLVNTLDADALTRILGDWGEIDTPWKVAACIVRARTAQPILTTADLVAAV-- 62 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 K + T+ FQALRI VN E+E L L + K L+ GG L+V+S+HSLEDRL Sbjct: 63 APCTPKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSLEDRL 122 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK F S + + + P F+ IT+K V P+ E++ N RSRSAKLRA + Sbjct: 123 VKNFLRSGNFEGRIEKDFFGKPETP--FEIITRKAVTPSSEELVRNPRSRSAKLRAAAKI 180 >gi|125580743|gb|EAZ21674.1| hypothetical protein OsJ_05305 [Oryza sativa Japonica Group] Length = 439 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 135/298 (45%), Gaps = 43/298 (14%) Query: 62 IALDRDPFAVSCGQETMRD-----------------------YKEQFSLFQATFSQLQD- 97 I +D DP A+ G+ + + + F + + + Sbjct: 141 IGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDEN 200 Query: 98 -YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKD 155 V GVDG++ DLG+SSMQ++ DRGFS + GPLDMRM A D++N + Sbjct: 201 IAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLE 260 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRS 213 + RIL GEE + IVK R +T +L LIQ+T S + I ATR Sbjct: 261 VGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRV 320 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQALRI VN+E+ L L + L G L V+SFHSLEDR+VK+ F + Sbjct: 321 FQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDD 380 Query: 274 HM------IPSNAHPAVFQ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + F+ +TK+ + P+QE+ N+R RSAKLR + Sbjct: 381 DEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 438 >gi|167947445|ref|ZP_02534519.1| S-adenosylmethyl transferase MraW [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 172 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 1/162 (0%) Query: 157 TRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216 +L G+E+ A RIA AIV RQ P TT L+ ++ + + HPATRSFQA Sbjct: 12 ADVLKRYGDERHARRIARAIVAARQVEPILTTGRLAEIVSAANPAWEKGK-HPATRSFQA 70 Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 +RIF+N E+++L Q L + L+ GG L V+SFHSLEDR+VK+F ++ + Sbjct: 71 IRIFINRELDDLQQFLGQVLEVLRPGGRLAVISFHSLEDRIVKRFMRDQAKGDRFPAGVP 130 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + A + K + P ++ N R+RSA LR R Sbjct: 131 VTQAQLQPRLKLLGKAIRPGADETESNPRARSAVLRVAERLA 172 >gi|123225262|emb|CAM17437.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231530|emb|CAM24680.1| methyltransferase 5 domain containing 1 [Mus musculus] Length = 230 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 11/159 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + + V ALDRDP A + ++ Sbjct: 72 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + +DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEK 167 LDMRM ASDVVN + + L IL GEEK Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEK 230 >gi|294670599|ref|ZP_06735478.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307724|gb|EFE48967.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 180 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 4/175 (2%) Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + ++ ++ GEE+ + +IA AIV +R TT L+ + + V + PAT Sbjct: 4 DEDEIHEVIKNYGEERFSRQIARAIVAQRAVGSIDTTGKLAQIAAQNVRT-RERGQDPAT 62 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+A L A LK+GG L V++FHSLEDR+VK+F S Sbjct: 63 RTFQAIRIFINRELEEIAAVLPQAAGRLKSGGRLAVIAFHSLEDRIVKQFIKRYSTHAPL 122 Query: 272 VRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324 + + ++ +SI K + + ++VA N R+RSA LR RT ED Sbjct: 123 PKWAAVREADLPQPPLKSI-GKAIKASADEVAANPRARSAVLRIAERTDGIFSED 176 >gi|325915801|ref|ZP_08178101.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] gi|325537984|gb|EGD09680.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] Length = 218 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 2/165 (1%) Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 +D+ +L GEE+Q+ RIA AIV RR P T L+ LI +V +++ HPAT Sbjct: 19 PPRDIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI-ASVMPRGDSKTHPAT 77 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 RSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLEDR+VK+F A + + Sbjct: 78 RSFQAIRIYINRELDDLQAGLDAALDALKPGGRLAVISFHSLEDRIVKQFMARYAKAPPS 137 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 R + + Q I+ + ++ N R+RSA LR + Sbjct: 138 NRRLPEAQPFVPTLQLISG-AIKADDAELNINPRARSAVLRVAEK 181 >gi|145502845|ref|XP_001437400.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404550|emb|CAK70003.1| unnamed protein product [Paramecium tetraurelia] Length = 277 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 33/275 (12%) Query: 41 LDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +D T G G +S+ + ++ LD D + + + ++ F F + + Sbjct: 24 VDCTIGTGAHSQILLEHVKNLKILGLDIDERMIKNLPQNITAKQDNFIN----FYKHKTL 79 Query: 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLT 157 K D + DLG + Q+ G S++K+ LDMR S S +A+D++N + ++L Sbjct: 80 SDTKNFDIIFADLGYNINQVYDESYGLSYKKNSLLDMRYSQSIQHTAADLLNNRSQQELR 139 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 I G +A+++A I+ RQ F+ + ++ + ++FQAL Sbjct: 140 EIFYHYGNIHKANQLAKIIIDNRQKEKFERANQVVDILNELSM------GDQIMKTFQAL 193 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLI-VVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 RI VN EI L L + LI +++FHSLE V+KF + Sbjct: 194 RIAVNQEINNLNLFLEKVQSQQIVDKQLILIITFHSLEAESVQKFIMKFKKQFSM----- 248 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 K + P+++++ N RSRSA L Sbjct: 249 --------------KTIKPSEDEIKENPRSRSALL 269 >gi|294670598|ref|ZP_06735477.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307723|gb|EFE48966.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 146 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HV VLL + + LN V +D TFG GG+SR ++ D+DP Sbjct: 1 MSSQEFQHVTVLLHEAVDGLNVVSDGVYVDGTFGRGGHSRLILSRLGEKGRLVVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ E + + S+ FS Q + +DG +FDLG+SS QID G RGFS Sbjct: 61 AIAVAHE-LAARDGRVSVIHDGFSSFQTALDGLGIGQIDGTLFDLGISSPQIDDGSRGFS 119 Query: 127 FQKSGPLDMRMSCSGISASDVV 148 F+ PLDMRM + + Sbjct: 120 FRFDAPLDMRMDTTRGDICLRM 141 >gi|42559483|sp|Q8KTR3|RSMH_TREPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21702588|gb|AAM75985.1|AF481102_21 putative protein YabC [Candidatus Tremblaya princeps] Length = 295 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 35/309 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H V++++V+ L + +DAT+G GG+S + VIALD D Sbjct: 5 EHRSVMIQEVVDNLLTNTSGLYIDATYGTGGHSTALLGCLGPQGKVIALDCDQ-----SI 59 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + A F +L Y+ G DG+V DLG S+ Q+ RG S+ GP Sbjct: 60 RFDHTSDPRAAAGHANFRELSGYLRCAEIYGADGIVADLGPSATQVHDAQRGLSYLHPGP 119 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 +DMR+ + + S + + + L L G + A I+ + A + TT D+ Sbjct: 120 IDMRVDPTLRVPLSGRLMRTGLGTLHSSLRCHGFSGRTKAAASRILHIVRKARYTTTLDV 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ N H A +F+ALR N+E + L +R A LK GG L++++F Sbjct: 180 AT----AACGLHNQGKHMAADAFRALRSMANSEPQCLRSLVRHAPAVLKPGGRLLILTFD 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S +R+V+ S + + V PTQ +V N +RS+ L Sbjct: 236 SFGERMVRASIEHASC-------------------LVLMRTVAPTQREVDTNPGARSSLL 276 Query: 312 RAGMRTVER 320 RT Sbjct: 277 HVLRRTGNP 285 >gi|254468248|ref|ZP_05081654.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] gi|207087058|gb|EDZ64341.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] Length = 212 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 87/212 (41%), Positives = 119/212 (56%), Gaps = 5/212 (2%) Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 DLGVSS Q+D RGFSF +GPLDMRM S A +VVN+ N DL +I GEEK Sbjct: 1 MDLGVSSPQLDDASRGFSFMHNGPLDMRMDQSQTLDACEVVNKYNESDLIKIFRDYGEEK 60 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227 A RIA I K R +T +L+++++K+V ++ N+R HPAT+ FQALRI VN E+ E Sbjct: 61 FAKRIASNICKIRNEKNITSTLELANIVKKSVPYT-NSRKHPATKVFQALRIEVNQELNE 119 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 L + L LK G L+ ++FHSLEDR+VK F + + + Sbjct: 120 LKEALPLLFDVLKPQGRLLALTFHSLEDRIVKNFIKEITKLAPDTIPKFIPIRNTDHHEK 179 Query: 288 ITKKVV---VPTQEDVAFNRRSRSAKLRAGMR 316 V+ + + E+V N RSRSA+LR + Sbjct: 180 TKANVICNLIASTEEVEANPRSRSARLRGVEK 211 >gi|312867867|ref|ZP_07728072.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] gi|311096622|gb|EFQ54861.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] Length = 186 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 9/152 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S ++ A D+D A+ + Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFDQDQHAIENAKI 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + + F L++ + D +DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPFIEKGMVTFIKDNFRHLKERLNDLGVTEIDGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGI 162 PLDMRM+ ++A +VVN + DL RI Sbjct: 127 PLDMRMNQEASLTAYEVVNSYDYHDLVRIFSN 158 >gi|218461400|ref|ZP_03501491.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5] Length = 216 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 80/164 (48%), Positives = 106/164 (64%), Gaps = 1/164 (0%) Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 PF+TT+DL+ LI+ ++IHPATR FQALRIFVN+E+ ELAQ L +AE+A Sbjct: 53 AVPKKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERA 112 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK GG L+VV+FHSLEDR+VKKFF+ R+GK RH+ ++ A F I K +V ++ Sbjct: 113 LKPGGRLVVVTFHSLEDRIVKKFFSDRAGKATGSRHLPAAHERAATFTVIGKPMVSASEA 172 Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQFRG 341 + N R+RSAKLRAG+RT + D S P L TL + G Sbjct: 173 EAEVNPRARSAKLRAGLRTDAATEPADMSLFGFPNLATLGKLGG 216 >gi|314923253|gb|EFS87084.1| MraW methylase family protein [Propionibacterium acnes HL001PA1] gi|314967020|gb|EFT11119.1| MraW methylase family protein [Propionibacterium acnes HL082PA2] gi|314980976|gb|EFT25070.1| MraW methylase family protein [Propionibacterium acnes HL110PA3] gi|315091635|gb|EFT63611.1| MraW methylase family protein [Propionibacterium acnes HL110PA4] gi|315093059|gb|EFT65035.1| MraW methylase family protein [Propionibacterium acnes HL060PA1] gi|315103167|gb|EFT75143.1| MraW methylase family protein [Propionibacterium acnes HL050PA2] gi|327327840|gb|EGE69616.1| MraW methylase family protein [Propionibacterium acnes HL103PA1] Length = 201 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 68/182 (37%), Positives = 95/182 (52%), Gaps = 2/182 (1%) Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 SG +A+ ++N+++ DL R+L GEEK A RI AIV R P +T+ L +I + Sbjct: 5 QSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITE 64 Query: 198 TVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + HPA R+FQALRI VN E+E L L A L GG + V+S+HSLED Sbjct: 65 AIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVLSYHSLED 124 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK+ F + + A F +T+ P ++VA N RS SA+LR Sbjct: 125 RPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIG 184 Query: 316 RT 317 R Sbjct: 185 RV 186 >gi|256080680|ref|XP_002576606.1| S-adenosyl-methyltransferase mraW [Schistosoma mansoni] gi|238661881|emb|CAZ32843.1| S-adenosyl-methyltransferase mraW, putative [Schistosoma mansoni] Length = 260 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 96/270 (35%), Positives = 130/270 (48%), Gaps = 47/270 (17%) Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSG 131 + + FS L + + ++ DLGVSS+Q+D RGF F+ + Sbjct: 7 LLFYVSHKIYPLIGRFSDLPQLLNGYNLKYQSVDLILMDLGVSSLQLDIESRGFGFKHNA 66 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 PLDMRM+ S + I GEE+ + RIA+AIV R QTT+ Sbjct: 67 PLDMRMNQSPN-----------------VHIYGEERLSKRIANAIVDYRNDVGSIQTTKQ 109 Query: 191 LSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI V ++ R IHPATR FQALRIF+N+E+ EL GL AE LK GG L+V+ Sbjct: 110 LADLIHSVVPMNREGRSSIHPATRVFQALRIFINDELNELCIGLELAEFLLKPGGYLVVL 169 Query: 249 SFHSLEDRLVKKFF---------------ASRSGKVMAVRHMIPSNA--HPAVFQSITK- 290 SFHSLEDRLVK F SR + + R + ++ Q +K Sbjct: 170 SFHSLEDRLVKWSFHSDYKHLTLSKYLSQRSRHFQCINKRQEYEDDEISKESLGQIKSKW 229 Query: 291 ----KVVVPTQEDVAFNRRSRSAKLRAGMR 316 + P+ ++ N RSRSAKLR R Sbjct: 230 NCVIGPITPSDSEIDSNPRSRSAKLRIAKR 259 >gi|207109224|ref|ZP_03243386.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_CA4C1] Length = 158 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 5/158 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ +K + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165 S ++A V+N V L +I GE Sbjct: 121 HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGE 158 >gi|266624101|ref|ZP_06117036.1| MraW methylase family protein [Clostridium hathewayi DSM 13479] gi|288864070|gb|EFC96368.1| MraW methylase family protein [Clostridium hathewayi DSM 13479] Length = 150 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 2/149 (1%) Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229 IA IV+ R++ +TT +L+ +I++ V + HP+ ++FQA+RI +N E+E L Sbjct: 2 NIAKHIVRARETKRIETTGELTEIIKEAVPAKVRAVGGHPSKKTFQAIRIELNQELEVLN 61 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSI 288 + + L GG L V++FHSLEDR+VK F + + + I Sbjct: 62 NSIDTMIDLLNPGGRLAVITFHSLEDRIVKIRFRNNENPCTCPPDFPVCVCGKVSKGRVI 121 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 T+K VVP++E++ N+RS+S+KLR R Sbjct: 122 TRKPVVPSEEEINGNKRSKSSKLRVFERI 150 >gi|226328338|ref|ZP_03803856.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198] gi|225203071|gb|EEG85425.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198] Length = 89 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTTNNFSHTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 A++ E +FS+ F L Sbjct: 61 AIAVANEI---DDARFSIVHGPFQILNSMSM 88 >gi|21410962|gb|AAH30997.1| METT5D1 protein [Homo sapiens] Length = 212 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 7/126 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 5 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS +K G Sbjct: 65 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGS 124 Query: 133 LDMRMS 138 LDMRM Sbjct: 125 LDMRMD 130 >gi|119588673|gb|EAW68267.1| methyltransferase 5 domain containing 1, isoform CRA_b [Homo sapiens] Length = 279 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 8/131 (6%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS 138 +K GPLDMRM Sbjct: 187 RKDGPLDMRMD 197 >gi|82595835|ref|XP_726012.1| s-adenosyl-methyltransferase Mraw [Plasmodium yoelii yoelii str. 17XNL] gi|23481241|gb|EAA17577.1| s-adenosyl-methyltransferase mraw-related [Plasmodium yoelii yoelii] Length = 493 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 145/336 (43%), Gaps = 69/336 (20%) Query: 35 APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90 + ++DAT G GG++ K VI++D+D A+ + +R Y K + + Sbjct: 174 KEDEYLIDATLGGGGHTLEMLKKFKNLKVISIDKDIEAIYYNKYKLRSYINKNRLKIIHG 233 Query: 91 TFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS------ 138 + + ++ DLGVS+ QI RGFS++ + LDM M+ Sbjct: 234 NYKDILFLLNYYSLPIFNTYSAILVDLGVSTHQIKSSKRGFSYKYNDILDMNMNKYTEKE 293 Query: 139 ------------------------------------CSGISASDVVNQANVKDLTRILGI 162 G +++N N+K L I+ Sbjct: 294 YIENHINKELKQDTKIKELYMINESHDDDKNIYHKNYDGKKIHNILNTYNLKKLKYIIQK 353 Query: 163 LGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 GEEK+A +IA I++ R+ TT DL ++I T + + +R FQ+ RI++ Sbjct: 354 FGEEKKAYKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYKSNNKVLSRVFQSFRIYI 413 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 NNE+ L L S+ K LK GG+LI++S+HSLE++ + F Sbjct: 414 NNELLSLKNLLLSSHKILKQGGVLILISYHSLENKYIDLFVK----------------NK 457 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ I + ++PT ++V N+ SRSAK+ A + Sbjct: 458 TKLWNQINIQPIIPTNQEVKLNKSSRSAKMFAFKKI 493 >gi|289426915|ref|ZP_06428641.1| MraW methylase family protein [Propionibacterium acnes J165] gi|289160004|gb|EFD08182.1| MraW methylase family protein [Propionibacterium acnes J165] Length = 178 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 82/162 (50%), Gaps = 2/162 (1%) Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQ 215 R+L GEEK A RI AIV R P +T+ L +I + + + HPA R+FQ Sbjct: 2 RMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQ 61 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VN E+E L L A L GG + V+S+HSLEDR VK+ F Sbjct: 62 ALRIAVNREMETLPAVLPRALDRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLP 121 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + A F +T+ P ++VA N RS SA+LR R Sbjct: 122 MVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERV 163 >gi|205830884|sp|P0C7V9|ME15P_HUMAN RecName: Full=Putative methyltransferase-like protein 15P1; AltName: Full=Methyltransferase 5 domain-containing protein 2; AltName: Full=Methyltransferase-like protein 15 pseudogene 1 gi|119599129|gb|EAW78723.1| hCG2022166, isoform CRA_a [Homo sapiens] Length = 234 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 10/157 (6%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RG S Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSL 186 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILG 164 +K GPLD+RM G + S + + LT + + Sbjct: 187 RKDGPLDIRMD-GGRNISSLCYLYTER-LTTAIYLYC 221 >gi|118594403|ref|ZP_01551750.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium HTCC2181] gi|118440181|gb|EAV46808.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium HTCC2181] Length = 98 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + I LN P LD TFG GG+S+ K ++A+D+D Sbjct: 1 MSKENFTHIPVLLNESIDGLNINPAGTYLDCTFGRGGHSKEILKRLNQNGRLVAIDQDLA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 AV+ G++ ++F ++ FS + + V Sbjct: 61 AVAEGKKI---NDKRFDIYHGKFSSMDEIVKK 89 >gi|332836125|ref|XP_508346.3| PREDICTED: methyltransferase like 15 isoform 2 [Pan troglodytes] Length = 279 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 8/131 (6%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 T+ H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYA 126 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Y +Q FSQ + + DGV+ DLG SSMQ+D +RGFS Sbjct: 127 LAEHLSELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSL 186 Query: 128 QKSGPLDMRMS 138 +K GPLDMRM Sbjct: 187 RKDGPLDMRMD 197 >gi|13924472|gb|AAK49020.1|AF195898_1 hypothetical protein [Synechococcus sp. PCC 7002] Length = 136 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 4/125 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+ VL E+++A L P LD T G GG++ + V +DRD A++ E Sbjct: 6 KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++F ++ F + Q DG++ DLGVSS+Q D GDRGFSF+ PLDMR Sbjct: 66 RLKSFGDRFRAVRSNFGEYQPQGEK--FDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123 Query: 137 MSCSG 141 M Sbjct: 124 MDQQQ 128 >gi|72025930|ref|XP_795360.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Strongylocentrotus purpuratus] gi|115727007|ref|XP_001191279.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Strongylocentrotus purpuratus] Length = 187 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + H PV++E+V++ P +V +D TFG GG++++ K V LDRDPFA Sbjct: 54 VVDAHSLHKPVMVEEVLSFFAPQANQVYIDMTFGGGGHTQALMKCAPGITVYGLDRDPFA 113 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSF 127 Q+ +K Q FS+++D + + V ++ D G SS Q D +RGF+ Sbjct: 114 HQIAQKLSLHHKGQLCPLLGKFSEVKDLLSQREVSMVDGILIDAGCSSFQFDSPERGFAL 173 Query: 128 QKSGPLDMRMS 138 + GPLDMRM Sbjct: 174 SQDGPLDMRMD 184 >gi|255024442|ref|ZP_05296428.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-208] Length = 126 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 + HP R+FQA+RI VN+E+ + L A LK GG + V++FHSLEDR+ K+ F Sbjct: 9 RRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLEDRITKQLF 68 Query: 263 ASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + + + + F+ T+K +VP++E++ N R+RSAKLR + Sbjct: 69 QEATKRPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLRVIEKI 124 >gi|198431217|ref|XP_002121381.1| PREDICTED: similar to MGC84490 protein [Ciona intestinalis] Length = 226 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 7/136 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAV 71 H+PV+ E++++ LN G VI+D TFGAGG+++ + VIALDRD A Sbjct: 30 SKETALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRDEKAF 89 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFS 126 Q+ + +K + FS+L + D G+ + V+ D G SSMQ D +RGFS Sbjct: 90 EIAQDLSKKFKGRIIPLLGKFSELDKLLSDHGIVENSLNAVLLDAGCSSMQFDQPERGFS 149 Query: 127 FQKSGPLDMRMSCSGI 142 + GPLDMRM + Sbjct: 150 LVRDGPLDMRMDGNRW 165 >gi|291546845|emb|CBL19953.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. SR1/5] Length = 282 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 9/209 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ ++++++I L PG+V DAT G GG++++ + ++ A D DP Sbjct: 62 NTPAGMHISIMVKEIIDFLEIRPGQVGFDATLGYGGHTKAMLECLRGQGHMYATDVDPEE 121 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 122 SAKTRKRLAEQGFGEDILTIKLQNFCTIDEIAEEVGGFDFILADLGVSSMQIDNPKRGFS 181 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAP 184 F+ GPLD+R++ GISA+ ++ + ++L +L +E IA AI + R+ Sbjct: 182 FKVDGPLDLRLNQETGISAAQRLDTISREELAGMLDENSDEPYCEEIAKAITDEIRRGNH 241 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 TT L +I+KT+ F + Sbjct: 242 IDTTTKLREVIEKTLSFLPEKERKDTVKK 270 >gi|301102540|ref|XP_002900357.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like protein [Phytophthora infestans T30-4] gi|262102098|gb|EEY60150.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like protein [Phytophthora infestans T30-4] Length = 221 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 20 HVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H+PVLL++ + L+ V +D T G GG+SR+ + S ++ +D DP +S Sbjct: 19 HIPVLLQETVTALSRNVSDVSKPLYFVDGTAGFGGHSRAILQRFSDARLLCIDCDPEVLS 78 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q + ++ + S +++ L + VDG++ DLG +S D RGFS Sbjct: 79 IAQANLSEFHGRVSFQNGSYADLAKHLEAARFPDEVDGILVDLGANSFHFDAARRGFSVL 138 Query: 129 KSGPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GPLDMR + S +D VN + LT+I GEE+ A A AIV+ R+ Sbjct: 139 NDGPLDMRFNQLDASLSTAADAVNSLSEVQLTKIFRDYGEERLAKEFAKAIVREREE 195 >gi|167932993|ref|ZP_02520080.1| S-adenosyl-methyltransferase MraW [candidate division TM7 single-cell isolate TM7b] Length = 242 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 93/256 (36%), Positives = 128/256 (50%), Gaps = 22/256 (8%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQI 118 + +DRD A++ E R +L A F + D ++ DLGVSS Q+ Sbjct: 2 LFLVDRDENAIA---ELGRFSALGATLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQL 58 Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D GDRGFSF GPLDMRM SA+D+VN + L IL GEE+ A I Sbjct: 59 DNGDRGFSFMYDGPLDMRMDQRQKFSAADIVNSYPKQKLIEILVRYGEER--LSFAKRIA 116 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 T + + ++ +IHPATR+FQALRI VN E+ ++ L + Sbjct: 117 DEIYKRRPFTKTSELAKMIVEIHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQ 176 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-VPT 296 L +GG + ++SFHSLEDRLVK+FF SG + + + + KK + T Sbjct: 177 LLNSGGRVGIISFHSLEDRLVKRFFKDNSGL-----------SFESELELLNKKPLDGAT 225 Query: 297 QEDVAFNRRSRSAKLR 312 + A+N RSRSAKLR Sbjct: 226 YD--AYNPRSRSAKLR 239 >gi|148228894|ref|NP_001085383.1| methyltransferase like 15 [Xenopus laevis] gi|49258062|gb|AAH71163.1| MGC84490 protein [Xenopus laevis] Length = 191 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 7/130 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HVPV++ +VI L P G+ ILD TFGAGG++ S + S ++ALDRDP A + Q+ Sbjct: 45 HVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILRQASNIKILALDRDPAAFAIAQQL 104 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y FS+ +D + +DGV+ D G SSMQ D DRGFS K GP Sbjct: 105 AHGYGPNIQPLLGRFSEAEDLLKSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSKDGP 164 Query: 133 LDMRMSCSGI 142 LDMRM Sbjct: 165 LDMRMDGDRC 174 >gi|295115795|emb|CBL36642.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [butyrate-producing bacterium SM4/1] Length = 299 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 8/181 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+V LDAT G GG++R K ++ LD DP Sbjct: 84 GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143 Query: 75 QETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D + ++ F+ + + D ++ DLGVSSMQID +RGF+++ Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLD+RM G +A++ + + ++ +L +E A I+H + R ++ Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLETGRKDRYH 263 Query: 190 D 190 Sbjct: 264 H 264 >gi|323219910|gb|EGA04388.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 159 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222 GEE+ A RIA AIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN Sbjct: 1 FGEERFAKRIARAIVERNREQPMTRTKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVN 59 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282 +E+EE+ Q L+S+ L GG L ++SFHSLEDR+VK+F +S + + A Sbjct: 60 SELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQL 119 Query: 283 AVF---QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 + ++P +++VA N R+RS+ LR RT Sbjct: 120 KKLGGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA 159 >gi|210610097|ref|ZP_03288259.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787] gi|210152609|gb|EEA83615.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787] Length = 265 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 14/216 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 G H+ + +++++ PG+ LDAT G GG++ K ++ ALD DP Sbjct: 50 GMHISICVKEILDFFQIEPGQKGLDATLGYGGHTLEMLKCLKGEGHLYALDIDPIESVKT 109 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +++ E S+ F+ + V + D ++ DLGVSSMQID DRGF+++ Sbjct: 110 KERLKNLGYGEEMLSIRHLNFADIDQVVEEAGPFDFILADLGVSSMQIDNPDRGFTYKSE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 G LD+R++ G SA++ + +L +L +E A+ IA ++K+ RQ TT Sbjct: 170 GSLDLRLNPEKGESAAERLKNVTEDELEGMLVENSDEPYAAEIAQQVMKKLRQGEMIDTT 229 Query: 189 QDLSSLIQKTVYFSKNNR-----IHPATRSFQALRI 219 L I++ + F R+FQALRI Sbjct: 230 TKLYETIEEALSFIPEKERKEAVKKSCQRTFQALRI 265 >gi|317473098|ref|ZP_07932397.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] gi|316899436|gb|EFV21451.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] Length = 260 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 8/181 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD D Sbjct: 72 STPAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIE 131 Query: 71 VSCGQETMRD---YKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + E ++ Q F+ + + D V+ DLGVSSMQID DRGFS Sbjct: 132 LEKTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFS 191 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ GPLD+R++ G+SA++ + ++L +L +E A IA A+V + + Sbjct: 192 YKTEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGQP 251 Query: 186 Q 186 Sbjct: 252 S 252 >gi|260889238|ref|ZP_05900501.1| MraW methylase family protein [Leptotrichia hofstadii F0254] gi|260860649|gb|EEX75149.1| MraW methylase family protein [Leptotrichia hofstadii F0254] Length = 129 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 K+ + HPA R+FQA+RIFVN E+E L++ L A K L G L+V++FHSLEDR+VK+ F Sbjct: 13 KSMKRHPAKRTFQAIRIFVNKELEVLSETLDKAVKLLNKNGRLLVITFHSLEDRIVKEKF 72 Query: 263 ASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + I ++ + ITKK ++ + ++ N R+ SAKLR R+ Sbjct: 73 REYEDPCTCPKDIPICVCNKKSLGKIITKKPIIAKKIELEENNRAHSAKLRIFERSE 129 >gi|46203082|ref|ZP_00052107.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 5/140 (3%) Query: 42 DATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY- 98 D TFGAGGY+R+ VIA+DRDP A+ G + + + L Q F L Sbjct: 2 DGTFGAGGYTRALLDAAPEAQVIAIDRDPTAIRAGADLVAAANGRLRLIQGRFGDLDTLL 61 Query: 99 --VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDL 156 + D VV D+GVSSMQ+D RGFSF++ GPLDMRM G +A+D+VN+ L Sbjct: 62 AEQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPTAADLVNETEEGML 121 Query: 157 TRILGILGEEKQASRIAHAI 176 IL GEE+++ +A AI Sbjct: 122 ADILYHFGEERRSRAVARAI 141 >gi|225389940|ref|ZP_03759664.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme DSM 15981] gi|225043994|gb|EEG54240.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme DSM 15981] Length = 111 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H VLL + + LN PG +D T G GG++ K +I +D+D A Sbjct: 1 MEELKFGHTSVLLYETVGSLNIIPGGCYVDGTLGGGGHALEVLKRLGHGRLIGIDQDEDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 + + ++ + ++ ++ + + ++ + + VDG+ DLGVSS Q+ Sbjct: 61 IRAAGQRLKAFADKVTIVRDNYRNIRSVLEQLSVEKVDGIYLDLGVSSYQL 111 >gi|153864731|ref|ZP_01997531.1| Bacterial methyltransferase [Beggiatoa sp. SS] gi|152145773|gb|EDN72468.1| Bacterial methyltransferase [Beggiatoa sp. SS] Length = 95 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 MS +H PVLL +VI LN +D TFG GG++R+ + V+ALD Sbjct: 1 MSKPESLNASEHQPVLLSEVIHALNIHADGTYIDCTFGRGGHTRAILNHLEASGRVLALD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFS 93 DP AV GQ + ++ + + F+ Sbjct: 61 TDPQAVQAGQA-LSVSDDRLRIVHSAFA 87 >gi|258615770|ref|ZP_05713540.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO] Length = 82 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDY 81 + + Y Sbjct: 63 HAKLRLASY 71 >gi|167951237|ref|ZP_02538311.1| S-adenosyl-methyltransferase MraW [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 119 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 I H PVLLE+ + LN + +D TFG GG+SR K+ +I +D+DP A+ Sbjct: 3 EITTHRPVLLEEAVTALNITAEGIYIDGTFGRGGHSRRILKVLGERGRLIGIDKDPQAIV 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 G+E + +F++ Q +F+ + ++ V Sbjct: 63 HGREQL-GGDARFTIVQQSFAMIAQVGTERQV 93 >gi|325914208|ref|ZP_08176560.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] gi|325539592|gb|EGD11236.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] Length = 146 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L G LD TFG GG++R + G ++ +D+DP Sbjct: 11 VSQPPAAHVPVLYTQVLDGLQVTEGGAYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPE 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 71 AIAVAEQTF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 129 Query: 130 SGPLDMRMSCS 140 GPLDMRM Sbjct: 130 DGPLDMRMDPD 140 >gi|153844085|ref|ZP_01993621.1| MraW methylase family [Vibrio parahaemolyticus AQ3810] gi|149745262|gb|EDM56513.1| MraW methylase family [Vibrio parahaemolyticus AQ3810] Length = 148 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 4/144 (2%) Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + ++ P T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A Sbjct: 4 RENEENEPMVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAA 63 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKV 292 + L G L V+SFHSLEDR+VK+F S + + A K Sbjct: 64 RILAPEGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKA 123 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + P+++++ N RSRS+ LR + Sbjct: 124 IKPSKQEIDMNPRSRSSVLRIAEK 147 >gi|266624100|ref|ZP_06117035.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] gi|288864078|gb|EFC96376.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] Length = 167 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + +H VLL + I LN P + +D T G GG++ C+ +I +D+D A++ Sbjct: 1 MMFEHKSVLLYEAIDSLNVKPDGIYVDGTLGGGGHALEVCRRLGEYGRLIGIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +RDY+++ ++ ++ + ++Q + D + DG+ DLGVSS Q+D +RGF++++ Sbjct: 61 AASERLRDYEDRVTIVRSNYEEIQSVLKDLGIEKADGIYLDLGVSSYQLDTPERGFTYRE 120 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 + +A+D+VN + DL RI+ GE+K A IA Sbjct: 121 EDAPLDMRMDQRNTRTAADIVNTYSEFDLYRIIRDYGEDKFAKNIA 166 >gi|320169060|gb|EFW45959.1| methyltransferase [Capsaspora owczarzaki ATCC 30864] Length = 642 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 20/197 (10%) Query: 30 ALLNP-APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR----DY 81 + L P P ++LDATFGAGG+S + + + + A+DRDP A+ ++ + + Sbjct: 216 SSLAPTRPPLILLDATFGAGGHSAALLRHAPPNTTLFAIDRDPDAIQRAEQLGQTNSLFH 275 Query: 82 KEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F Q +FSQ++ V D+G+ G++ D+G S Q+D RGFSF GPLDMR Sbjct: 276 SSRFRPLQGSFSQMRQLVADQGIQPGSVDGILMDIGFCSTQVDDATRGFSFLCDGPLDMR 335 Query: 137 MSCSG-------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 M +A+ V+ ++LT IL + GE +A IA AIV+ R++ P Q+T Sbjct: 336 MGAGTAFELAAIPTAATVLATLRCEELTHILRLYGELPKARAIADAIVRTRKTTPIQSTL 395 Query: 190 DLSSLIQKTVYFSKNNR 206 L+ + ++ V+ + Sbjct: 396 QLADIARRAVFSEAEYK 412 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 46/166 (27%) Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 F PA + FQALR+FVN+EI EL GL A L+ GG L V++F E Sbjct: 476 AFRFQGRKVKDPARQVFQALRVFVNDEISELRAGLGQAIALLRPGGRLAVITFQGAETTA 535 Query: 258 VKKFFAS-----------------------RSGKVMAVRHM----------------IPS 278 +++F S RS RH+ + S Sbjct: 536 LRRFLQSPTAILAADSVRSLDEDAPAASNARSADSSRPRHISLNDRFLAQKLQEFEQMQS 595 Query: 279 NAHPAVF-------QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 N P F ++ K + P++ ++ N R+RSAKL R+ Sbjct: 596 NNDPTHFPTSRALPLTVLHKAIGPSEHEIHRNPRARSAKLHVFERS 641 >gi|330938026|gb|EGH41806.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi str. 1704B] Length = 76 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 6 THITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 Query: 76 ETMRDYKEQF 85 + Sbjct: 66 ALAAEAGRFV 75 >gi|258539487|ref|YP_003173986.1| methyltransferase [Lactobacillus rhamnosus Lc 705] gi|257151163|emb|CAR90135.1| Methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 115 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 1/110 (0%) Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 + FQA+RI VN+E+ L L A K + GG + V++F SLEDRLVK F S Sbjct: 6 KKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQD 65 Query: 271 AVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 R + A +Q + +K ++P+ ++A N R+ SAKLR + Sbjct: 66 VPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAHSAKLRVIEKIRN 115 >gi|289426838|ref|ZP_06428564.1| MraW methylase family protein [Propionibacterium acnes J165] gi|289159927|gb|EFD08105.1| MraW methylase family protein [Propionibacterium acnes J165] Length = 165 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 9/153 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 1 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D VD V+ DLG+SS QID Sbjct: 61 IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 120 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152 +RGFS+ PLDMRM SG +A+ ++N+++ Sbjct: 121 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESD 153 >gi|210610079|ref|ZP_03288258.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787] gi|210152690|gb|EEA83696.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787] Length = 211 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 21/221 (9%) Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161 D ++ DLGVSSMQID DRGF+++ G LD+R++ G SA++ + +L +L Sbjct: 4 PFDFILADLGVSSMQIDNPDRGFTYKSEGSLDLRLNPEKGESAAERLKNVTEDELEGMLV 63 Query: 162 ILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQ 215 +E A+ IA ++K+ RQ TT L I++ + F R+FQ Sbjct: 64 ENSDEPYAAEIAQQVMKKLRQGEMIDTTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQ 123 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VN+E E L + ALK+GG + +++FHS EDR+VKK F + Sbjct: 124 ALRIDVNSEFEVLYALMEKLPSALKSGGKVAILTFHSGEDRIVKKAFKEWKKAGVYSE-- 181 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I V+ P+ ++ N R++S K+R ++ Sbjct: 182 ------------IANDVIRPSAKECVRNSRAKSTKMRWAIK 210 >gi|218508136|ref|ZP_03506014.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5] Length = 71 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 43/53 (81%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ + G+ VIALDRDP A++ Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIA 71 >gi|260889236|ref|ZP_05900499.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254] gi|260861296|gb|EEX75796.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254] Length = 78 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H PVL ++VI + V +D T G GG++ + S V+A+D+D A+ Sbjct: 1 MEYHKPVLFDEVIDNIITKKDAVYVDCTLGGGGHTEGILENSSENSKVVAIDQDTEAIEF 60 Query: 74 GQETMRDY 81 ++ ++ + Sbjct: 61 AKKDLKIW 68 >gi|33866828|ref|NP_898387.1| hypothetical protein SYNW2298 [Synechococcus sp. WH 8102] gi|33639429|emb|CAE08813.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 215 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 9/182 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 + + HVPVL E V+ P +++DAT G GG+S + G +I LD+D Sbjct: 1 MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A + E + + ++ ++ F+ +Y P + V+ DLGVSS Q+D +RGFSF+ Sbjct: 61 TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117 Query: 129 KSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ G +A++++++ +L ++ GEE+ + RIA I Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177 Query: 187 TT 188 + Sbjct: 178 SG 179 >gi|115727005|ref|XP_001191227.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] gi|115891754|ref|XP_001186015.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] Length = 194 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 14/192 (7%) Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 S +A+DVVN + LT+IL GEE A +IA AI+ R + ++ + + Sbjct: 2 PSQPTAADVVNSLDHVTLTQILRTYGEESNAKKIAQAIIDYRTNFNTFSSTSELATVIAC 61 Query: 199 VYFSKNNRI---------HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ + H AT++FQALRIFVNNE+ ELA + +A ++ GG L V++ Sbjct: 62 CHTHRDAKSNRDKLGRHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLT 121 Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK+ + + ++R + ++ + + + E++ N Sbjct: 122 FHSLEDRVVKRSLQGRHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNP 181 Query: 305 RSRSAKLRAGMR 316 R+RSAKLR ++ Sbjct: 182 RARSAKLRTAIK 193 >gi|198413504|ref|XP_002123312.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Ciona intestinalis] Length = 190 Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 9/184 (4%) Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 I+A+DVVN + ++LT I+ G+E+ A I+ +I++ R + + S+ Sbjct: 4 QITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENRPISTTLELARVVSMAFSQTS 63 Query: 201 FSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 R H AT++F A+RIFVN+E+ E+ G++++EK L GG + V++FHSLED Sbjct: 64 DVFRVDSLGRRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFHSLED 123 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK---VVVPTQEDVAFNRRSRSAKLR 312 R+VK+ M + K+ +++P+ E++ N RSRSAKLR Sbjct: 124 RVVKRMLKQIEISKPFNVKM-GVGKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSAKLR 182 Query: 313 AGMR 316 R Sbjct: 183 IATR 186 >gi|225708994|gb|ACO10343.1| S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Caligus rogercresseyi] Length = 366 Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 73/299 (24%), Positives = 123/299 (41%), Gaps = 32/299 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H PV ++V+ +L P ++ LD T+G GG++ + VIA DRD ++ Sbjct: 32 THTPVFFQEVLDILRPKKDQIFLDTTYGTGGHTNLILDHQPHARVIASDRDVSSIDLAMR 91 Query: 77 TMRDYK-EQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK- 129 + Y + A FS+L + + + DGV+ D G+S +Q +RGFS + Sbjct: 92 MGQKYPSGSLNAIVARFSELPRHLIRLGLRENTCDGVIIDCGISDIQWGG-ERGFSLKGP 150 Query: 130 -SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA--IVKRRQSAPFQ 186 +D +AS+V+ L R L G+ K +++ + R F Sbjct: 151 LDLRMDPERYPETPTASEVLQSIRELPLLRPLKNYGKLKTNAKLVANAIVESRYMFNRFT 210 Query: 187 TTQDLSSLIQKTVY-----------------FSKNNRIHPATRSFQALRIFVNNEIEELA 229 T ++L ++ V + K R+ ALR+FVN+EI +L Sbjct: 211 TAEELYEVLLDAVKFSEVRRSLFLTTEEASSWEKAFTESLLHRTLTALRMFVNDEINQLE 270 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 G+R A LK GGLL+VV E+ ++K + P ++ + Sbjct: 271 YGVRIASHYLKPGGLLLVVVRGEAEEIALRKTLTEIDFDPILSND--PEILRTLPWKLV 327 >gi|222831815|gb|EEE70292.1| predicted protein [Populus trichocarpa] Length = 81 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 9 MSSAIHH--TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63 MS T H VLL++ + L P +D TFG GG+SR+ ++A Sbjct: 1 MSPTESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVA 60 Query: 64 LDRDPFAVSCG 74 D+DP A++ Sbjct: 61 FDKDPAAIAEA 71 >gi|221502434|gb|EEE28161.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii VEG] Length = 1189 Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV+ Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607 Query: 75 QETMRD 80 + MR Sbjct: 608 RNRMRQ 613 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYF 201 A+ VVN L I GEE+ A IA IV+ R+ T + + Y Sbjct: 927 AAQVVNSLPQAALAYIFKTFGEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYR 986 Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + I +R FQALR++VN E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 987 NPQFVIKTCSRVFQALRMYVNQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQR 1046 Query: 262 FASRSGKVMA 271 + Sbjct: 1047 LKQNNKNSDW 1056 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 23/39 (58%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ + KK + P +E+V NRR+R+AK+R + Sbjct: 1141 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1179 >gi|221482188|gb|EEE20549.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii GT1] Length = 1191 Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV+ Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607 Query: 75 QETMRD 80 + MR Sbjct: 608 RNRMRQ 613 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYF 201 A+ VVN L I GEE+ A IA IV+ R+ T + + Y Sbjct: 927 AAQVVNSLPQAALAYIFKTFGEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYR 986 Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + I +R FQALR++VN E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 987 NPQFVIKTCSRVFQALRMYVNQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQR 1046 Query: 262 FASRSGKVMA 271 + Sbjct: 1047 LKQNNKNSDW 1056 >gi|237843145|ref|XP_002370870.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii ME49] gi|211968534|gb|EEB03730.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii ME49] Length = 1062 Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV+ Sbjct: 421 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 480 Query: 75 QETMRD 80 + MR Sbjct: 481 RNRMRQ 486 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYF 201 A+ VVN L I GEE+ A IA IV+ R+ T + + Y Sbjct: 800 AAQVVNSLPQAALAYIFKTFGEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYR 859 Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + I +R FQALR++VN E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 860 NPQFVIKTCSRVFQALRMYVNQELESLDSLLTHAERLLKPGGRLLILSYHSLEDRLIKQR 919 Query: 262 FASRSGKVMA 271 + Sbjct: 920 LKQNNKNSDW 929 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 23/39 (58%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ + KK + P +E+V NRR+R+AK+R + Sbjct: 1014 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1052 >gi|330981225|gb|EGH79328.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 122 Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+VK F Sbjct: 5 WEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFM 64 Query: 263 ASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + R++ I K + + N RSRSA +R + Sbjct: 65 RKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 120 >gi|325119263|emb|CBZ54817.1| putative S-adenosyl-methyltransferase mraW [Neospora caninum Liverpool] Length = 1044 Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++++V+ L A V +D T G GG+ + + G ++A+DRD AV Sbjct: 402 EHVPVMVQEVLQYLITAKDGVYVDCTAGGGGHVEAIWRAVASEGGRLLAIDRDEEAVEAT 461 Query: 75 QETMRD 80 + +R Sbjct: 462 RNRLRQ 467 Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 A+ VVN L I + GEE A IA IV+ R++ + I + + Sbjct: 782 AAQVVNGLPQAALASIFKLYGEEPLAELIAACIVRHRETRGTLRATEELREIVEGCCRYR 841 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 N + + +++VN E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 842 NPQ-FIIKTCSRVFQMYVNQELEVLDLLLTHAERLLKPGGRLVILSYHSLEDRLIKQRLK 900 Query: 264 SRSGKVMA 271 + Sbjct: 901 RITQGSGW 908 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 300 VAFNRRSRSAKLRAGMR 316 V NRR+RSAK+R + Sbjct: 1016 VLRNRRARSAKMRVAAK 1032 >gi|312867849|ref|ZP_07728054.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] gi|311096604|gb|EFQ54843.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] Length = 84 Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 40/82 (48%) Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G + V++FHSLEDRL K+ F S + + + + +K ++P Sbjct: 1 MDLLAIDGRISVITFHSLEDRLTKQLFKEVSTVEVPKGLPFIPDDLKPKMELVNRKPILP 60 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 + E++ N RS SAKLR + Sbjct: 61 SDEELEDNNRSHSAKLRVARKI 82 >gi|156329544|ref|XP_001619047.1| hypothetical protein NEMVEDRAFT_v1g152542 [Nematostella vectensis] gi|156201404|gb|EDO26947.1| predicted protein [Nematostella vectensis] Length = 150 Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 17/150 (11%) Query: 40 ILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ--ETMRDYKEQFSLFQATFSQLQ 96 +DATFGAGG++ + V A+DRDP AV Q T +YK Q Q FS L Sbjct: 1 FVDATFGAGGHTCAILNSAKCKVFAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKFSDLF 60 Query: 97 DYVPDKGVDG-----VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS---------CSGI 142 + + + G+ ++ D+G SSMQ D RGFS K GPLDMRM S Sbjct: 61 ELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSRNSSF 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRI 172 +A+DVVN + ++L +L G E+ A Sbjct: 121 TAADVVNSISERELISVLRHYGGERDAGMY 150 >gi|145627902|ref|ZP_01783703.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] gi|144979677|gb|EDJ89336.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] Length = 82 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVP 295 L G L ++SFHSLEDR+VK F +S + + Q I K + P Sbjct: 1 MLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAIQP 60 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 + ++ N RSRSA LR R Sbjct: 61 SDAEIQANPRSRSAILRVAERI 82 >gi|299143951|ref|ZP_07037031.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518436|gb|EFI42175.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 83 Score = 89.4 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVV 294 L GG + V+SFHSLEDR+VK+ F + + + + + IT+K +V Sbjct: 1 MDRLNPGGRIAVISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIV 60 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 +++++ N R+ SAKLR + Sbjct: 61 ASEKELIENNRAHSAKLRVAEK 82 >gi|56808162|ref|ZP_00365944.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pyogenes M49 591] Length = 95 Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 47/88 (53%) Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + ++ A + L G + V++FHSLEDRL K+ F S + + F+ ++ Sbjct: 6 EYIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVS 65 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +K ++P+ ++ N+R+ SAKLR + Sbjct: 66 RKPILPSHSELTANKRAHSAKLRVAKKI 93 >gi|225159221|ref|ZP_03725523.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis-like protein [Opitutaceae bacterium TAV2] gi|224802168|gb|EEG20438.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis-like protein [Opitutaceae bacterium TAV2] Length = 125 Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 H+ VLL+ + LL P G LD TFG GG++R+ V+ALDRD Sbjct: 34 HISVLLQPTLELLAPRAGGRYLDCTFGGGGHTRALLNAAPDTRVVALDRD 83 >gi|85057933|ref|YP_456849.1| hypothetical protein AYWB_653 [Aster yellows witches'-broom phytoplasma AYWB] gi|84790038|gb|ABC65770.1| conserved hypothetical protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 83 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 ++ H+ VL ++ I L P + +DAT G G++ + + + D+D A Sbjct: 1 MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60 Query: 71 VSCGQETMRDYKEQFSLFQATF 92 + ++T+ + + + F Sbjct: 61 CTNAKKTLSPHLP-IEIIHSIF 81 >gi|163784407|ref|ZP_02179294.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1] gi|159880321|gb|EDP73938.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1] Length = 115 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 + +H PVL ++V+ ILDAT G GG+S K +I LD+D +A+ Sbjct: 1 MIEHYPVLKDEVVKFFTLIESGKEYILDATVGGGGHSYLILKNFPNRKIIGLDKDDYALK 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQID 119 +E ++++K ++ L ++ F L + + +D V+FD GVS Q+ Sbjct: 61 RAEEKLKEFKGRYILIKSAFKDLDKVLENLNIDKLAGVLFDFGVSHFQLK 110 >gi|13537274|dbj|BAB40624.1| hypothetical protein [Vibrio natriegens] gi|13537277|dbj|BAB40626.1| hypothetical protein [Vibrio harveyi] gi|13537280|dbj|BAB40628.1| hypothetical protein [Vibrio harveyi] Length = 51 Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 H+ VLL + I L P + +D TFG GG+SR+ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGE 47 >gi|13537271|dbj|BAB40622.1| hypothetical protein [Vibrio alginolyticus] Length = 51 Score = 87.1 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 21/45 (46%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 H+ VLL + I L P V +D TFG GG+SR+ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGE 47 >gi|261885262|ref|ZP_06009301.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 111 Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 +FQA+RI VN E++EL L + + +L ++SFHSLED++ K F + Sbjct: 1 MAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDKIAKSTFKEWEKSCIC 60 Query: 272 VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + + ++ + +TKK + P+++++ N RS AK+R Sbjct: 61 DNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRIF 105 >gi|330950233|gb|EGH50493.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7] Length = 187 Score = 86.3 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 2/176 (1%) Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQA 151 S+ Q+ V G++ DLGVSS Q+D +RGFSF GPLDMRM G+SA++ + A Sbjct: 10 SETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVSAAEFIATA 69 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 +++ R+ GEE+ A R+A+A+V RR+ PF T DL+ +++ + + +PAT Sbjct: 70 PAEEIARVFKEYGEERFAKRMANAVVARREVQPFDRTADLAEVLKVANPAWEKGK-NPAT 128 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 R+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+VK F + Sbjct: 129 RAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFMRKLAK 184 >gi|70927460|ref|XP_736113.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56510372|emb|CAH87288.1| hypothetical protein PC302411.00.0 [Plasmodium chabaudi chabaudi] Length = 243 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 50/245 (20%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMR 79 P+LL + ++DAT G GG++ K + + I++D+D A+ + ++ Sbjct: 6 PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKYKLK 57 Query: 80 DY--KEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Y + L + + ++ DLGVS+ Q+ RGFS++ + Sbjct: 58 SYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYKYNN 117 Query: 132 PLDMRMSCS-------------------------------GISASDVVNQANVKDLTRIL 160 LDM M+ G +++N N+K L I+ Sbjct: 118 ILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLKYII 177 Query: 161 GILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219 GEEK+A +IA I++ R+ TT DL ++I T + + +R FQA RI Sbjct: 178 QKFGEEKKAFKIAKKIIEWRKQNKEIVTTFDLKNIILSTCKNNYKSNNKVLSRVFQAFRI 237 Query: 220 FVNNE 224 +VNNE Sbjct: 238 YVNNE 242 >gi|295099855|emb|CBK88944.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Eubacterium cylindroides T2-87] Length = 107 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 53/100 (53%) Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278 + VN E+ +L L+ K LK G + V++FHSLEDR+VKK F + + + Sbjct: 1 MEVNQELPQLEVVLKEGLKRLKPHGRMCVITFHSLEDRIVKKIFKEVAVPKKVDKRLPSL 60 Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +Q + +K V+ +++++ N R+ SAKLR R Sbjct: 61 GIENLEYQLVNRKPVLASKQELDTNYRAHSAKLRGIERNE 100 >gi|261330354|emb|CBH13338.1| S-adenosyl-methyltransferase mraW-like protein,putative [Trypanosoma brucei gambiense DAL972] Length = 474 Score = 84.4 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 15/235 (6%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD T G+G ++ + + G V+ALD D A+ ++ + ++ ++F + S+ Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRFRFYCCKMSEA 189 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152 + ++ D ++ D GVS Q++ +RGF LDMR G+ A + +N + Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY------FSKN 204 L L + G E QA +++ AI +R+ + + Sbjct: 250 QHTLVSSLLVYGLLEYGQAMKMSRAITRRKPFVDSREVLTCIEQAGDELPEGGWRSQGSR 309 Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + + + +LR +NNE+ EL QG+ +A L+ G L+V S E+RLV+ Sbjct: 310 RKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364 >gi|254469046|ref|ZP_05082452.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] gi|207087856|gb|EDZ65139.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] Length = 96 Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H P++ +V L LD TFG GG+S+ + +IA+D+D A++ + Sbjct: 6 HFPIMRYEVTKHLIIDKNGKYLDCTFGRGGHSKIILDSLEQKGELIAIDKDHEAINSAKS 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV 107 + E F++ G + Sbjct: 66 IQDERFEIHHSSILNFAKSLKKKVLMGYLWI 96 >gi|225389939|ref|ZP_03759663.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme DSM 15981] gi|225044001|gb|EEG54247.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme DSM 15981] Length = 64 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VKK F + + + IT+K ++P++E++ N RS+SAKLR Sbjct: 1 DRIVKKRFRESEHPCICPPDFPVCVCGRVSRGRVITRKPILPSEEELEVNSRSKSAKLRV 60 Query: 314 GMR 316 R Sbjct: 61 FER 63 >gi|169839617|ref|ZP_02872805.1| S-adenosyl-methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 67 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 +EDR+VK+ F + I ++ + IT+K +V ++ N R+ SAKL Sbjct: 1 MEDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITRKPIVAKTSELEENNRAHSAKL 60 Query: 312 RAGMRTV 318 R R+ Sbjct: 61 RIFERSE 67 >gi|72392687|ref|XP_847144.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma brucei TREU927] gi|62176037|gb|AAX70159.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma brucei] gi|70803174|gb|AAZ13078.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 474 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 15/235 (6%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD T G+G ++ + + G V+ALD D A+ ++ + ++ ++ + S+ Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRLRFYCCKMSEA 189 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152 + ++ D ++ D GVS Q++ +RGF LDMR G+ A + +N + Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY------FSKN 204 L L G E QA +++ AI +R+ + + Sbjct: 250 QHTLVSSLLAYGLLEYGQAMKMSRAITRRKPFVDSREVLTCIEQAGDELPEGGWRSQGSR 309 Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + + + +LR +NNE+ EL QG+ +A L+ G L+V S E+RLV+ Sbjct: 310 RKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364 >gi|115691196|ref|XP_001203985.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] gi|115735657|ref|XP_001187798.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] Length = 140 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASR 265 H AT++FQALRIFVNNE+ ELA + +A ++ GG L V++FHSLEDR+VK+ Sbjct: 26 HTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSLEDRVVKRSLQGRHV 85 Query: 266 SGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + ++R + ++ + + + E++ N R+RSAKLR ++ Sbjct: 86 AERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARSAKLRTAIK 139 >gi|71412140|ref|XP_808269.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi strain CL Brener] gi|70872439|gb|EAN86418.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 464 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 18/268 (6%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G G ++ + + G V+ALD D + E + ++ ++F F S+ Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR GI A +N Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203 L+ L G + + R PF +++D+ ++ Sbjct: 240 QHALSGALSAYG-LLTPEQSMKMAREVRCRRPFTSSRDVIGCVEAAGDMLPEEVWSTQSS 298 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 299 RRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQSTVE 358 Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITK 290 S + + F TK Sbjct: 359 SHPHALLCYTEDVPMEEVCEHGFTRHTK 386 >gi|159470611|ref|XP_001693450.1| predicted protein [Chlamydomonas reinhardtii] gi|158282953|gb|EDP08704.1| predicted protein [Chlamydomonas reinhardtii] Length = 74 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQE 298 GG L V+SFHSLEDRLVK FA +G P + H + K V+P++E Sbjct: 3 PGGRLAVISFHSLEDRLVKHAFARAAG------RPTPEDEHRTRVAVLVGNQKPVLPSEE 56 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N R+RSAKLR + Sbjct: 57 ETARNPRARSAKLRVLQK 74 >gi|2463559|dbj|BAA22552.1| unnamed protein product [Staphylococcus aureus] Length = 65 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 255 DRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRL K+ F R + A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 1 DRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRV 60 Query: 314 GM 315 Sbjct: 61 AE 62 >gi|322827176|gb|EFZ31465.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 516 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 18/268 (6%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G G ++ + + G V+ALD D + E + ++ ++F F S+ Sbjct: 172 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 231 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR GI A +N Sbjct: 232 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGSQLGIGALAYLNTVP 291 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203 L+ L G + + R PF +++D+ ++ Sbjct: 292 QHALSGALSAYG-LLTPEQSMKMAREVRCRRPFTSSRDVIGCVEAAGDMLPEEVWSTQSS 350 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 351 RRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQSTVE 410 Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITK 290 S + + F TK Sbjct: 411 SHPHALLCYTEDVPMEEVCEHGFTRHTK 438 >gi|157869826|ref|XP_001683464.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major] gi|68126529|emb|CAJ04793.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major strain Friedlin] Length = 489 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 17/257 (6%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDMRM-SCSGISASDVVNQAN 152 + ++ D V+ D G SS Q++ +RGF LDMR G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSSTQLENPERGFLLNDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203 L+ L E + RQ PF Q + +++ Sbjct: 264 QHALSGALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEAVEEAGNELPEEGWGTQGS 322 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + + +LR VN+E EL++ L++A L+ G L+V S E++L+ + Sbjct: 323 RRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTTIS 382 Query: 264 SRSGKVMAVRHMIPSNA 280 +++ IP Sbjct: 383 QHPHALLSYSEAIPIED 399 >gi|317473099|ref|ZP_07932398.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA] gi|316899437|gb|EFV21452.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA] Length = 115 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 14/117 (11%) Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + K R+FQALRI VN+E E L + L L GG +++FHS EDRLVK Sbjct: 12 HEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAKGGRAAILTFHSGEDRLVK 71 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K F V+Q I+ V+ P+ E+ N R+RS K+R ++ Sbjct: 72 KSFKRL--------------LREGVYQEISTDVIRPSAEECRMNSRARSTKMRWAIK 114 >gi|322491999|emb|CBZ27273.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 489 Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 110/275 (40%), Gaps = 23/275 (8%) Query: 28 VIALLNPAPGKV------ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 + L P + +LD TFG+G ++ + G + V+A+D D A +E + Sbjct: 126 ALDALVPLSKQKRLVSYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDLEATVSAREIV 185 Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDM 135 ++ ++F F S+ + ++ D V+ D G S Q++ +RGF LDM Sbjct: 186 DEFGADRFRFFARPMSEAKAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDM 245 Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R G+ A + +N L+ L E + RQ PF Q + Sbjct: 246 RYGPTHGLGALEYLNTVPQHALSSALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEA 304 Query: 195 IQKTVYFSK---------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +++ + + +LR VN+E EL++ L++A L+ G L Sbjct: 305 VEEAGNELPEEGWGTQGSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRL 364 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +V S E+RL+ + +++ IP Sbjct: 365 VVFSRLPWEERLISTTVSQHPHALLSYSEAIPIED 399 >gi|71424845|ref|XP_812929.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi strain CL Brener] gi|70877764|gb|EAN91078.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 464 Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 18/268 (6%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G G ++ + + G V+ALD D + E + ++ ++F F S+ Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR GI A +N Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------- 203 L+ L + + R+ PF +++D+ ++ Sbjct: 240 QHALSGALSAYA-LLTPEQSMKMAREVRRRRPFTSSRDVIGCVEAAGDMLPEEVWSTQSS 298 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 299 RRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLVWEERLIQSTVE 358 Query: 264 SRSGK-VMAVRHMIPSNAHPAVFQSITK 290 S + + F TK Sbjct: 359 SHPHALLCYTEDVPMEEVCEHGFTRHTK 386 >gi|322499261|emb|CBZ34334.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 489 Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDMRM-SCSGISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY---------FSK 203 L+ L E + RQ PF Q + +++ Sbjct: 264 QHALSGALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEAVEEAGNELPEEGWGTQDS 322 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + + +LR VN+E EL++ L++A L+ G L+V S E++L+ + Sbjct: 323 RRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTTIS 382 Query: 264 SRSGKVMAVRHMIPSNA 280 +++ IP Sbjct: 383 QHPHALLSYSEAIPIED 399 >gi|146087428|ref|XP_001465817.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum JPCM5] gi|134069917|emb|CAM68246.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum JPCM5] Length = 489 Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDMRM-SCSGISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY---------FSK 203 L+ L E + RQ PF Q + +++ Sbjct: 264 QHALSGALASY-ELLTPQQSMKLARAIRQRRPFDGAQRVLEAVEEAGNELPEEGWGTQDS 322 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + + +LR VN+E EL++ L++A L+ G L+V S E++L+ + Sbjct: 323 RRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTTIS 382 Query: 264 SRSGKVMAVRHMIPSNA 280 +++ IP Sbjct: 383 QHPHALLSYSEAIPIED 399 >gi|289809859|ref|ZP_06540488.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 73 Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRS 306 FHSLEDR+VK+F +S + + A + ++P +++VA N R+ Sbjct: 1 FHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRA 60 Query: 307 RSAKLRAGMRTVE 319 RS+ LR RT Sbjct: 61 RSSVLRIAERTNA 73 >gi|237732706|ref|ZP_04563187.1| predicted protein [Mollicutes bacterium D7] gi|229384222|gb|EEO34313.1| predicted protein [Coprobacillus sp. D7] Length = 117 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 +G H+ +++++++ L+ G++ LD T G GG++ + ++ ALD DP Sbjct: 59 STPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHMYALDIDP 116 >gi|68065600|ref|XP_674783.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56493579|emb|CAH96215.1| conserved hypothetical protein [Plasmodium berghei] Length = 220 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 17/181 (9%) Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQ 196 + D++N N+K L I+ GEEK+A +IA I++ R+ TT DL ++I Sbjct: 56 NYDSKKIHDILNTYNLKKLKYIIQKFGEEKKAFKIAKKIIEWRKKNGEIITTFDLKNIIL 115 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T + + +R FQ+ RI++N+E+ L L S+ K LK GG+LIV+S+HSLE++ Sbjct: 116 STCKNNYKSNNKVLSRVFQSFRIYINSELLSLKNLLLSSHKILKQGGVLIVISYHSLENK 175 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + F ++ I + +VPT +++ N+ SRSAK+ + Sbjct: 176 YIDLFVK----------------NKTKLWNQINIQPIVPTDQEIKLNKSSRSAKMFVFKK 219 Query: 317 T 317 Sbjct: 220 I 220 >gi|322505001|emb|CAM36637.2| S-adenosyl-methyltransferase mraW-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 491 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 113/275 (41%), Gaps = 23/275 (8%) Query: 28 VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 V+ L + LD TFG+G ++ + G + V+A+D D A ++ Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187 Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135 ++ ++F + S+ + ++ D V+ D G S Q++ +RGF + LDM Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R + A + +N L+ L E + RQ PF + + Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASY-ELLTPQQSMKLARAIRQRRPFGGAHRVLEV 306 Query: 195 IQKT---------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +++ + + + +LR VN+E +EL++ L++A L+A G L Sbjct: 307 VEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEALQNALLLLRADGRL 366 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +V S E++L+ + +++ +IP + Sbjct: 367 VVFSRLLWEEKLISATISQHPHALLSYSEVIPIDE 401 >gi|154337952|ref|XP_001565202.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 491 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 113/275 (41%), Gaps = 23/275 (8%) Query: 28 VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 V+ L + LD TFG+G ++ + G + V+A+D D A ++ Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187 Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135 ++ ++F + S+ + ++ D V+ D G S Q++ +RGF + LDM Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R + A + +N L+ L E + RQ PF + + Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASY-ELLTPQQSMKLARAIRQRRPFGGAHRVLEV 306 Query: 195 IQKT---------VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +++ + + + +LR VN+E +EL++ L++A L+A G L Sbjct: 307 VEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEPLQNALLLLRADGRL 366 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +V S E++L+ + +++ +IP + Sbjct: 367 VVFSRLLWEEKLISATISQHPHALLSYSEVIPIDE 401 >gi|309807739|ref|ZP_07701673.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308168999|gb|EFO71083.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 44 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + I++K +V T +++ N RS SAKLR + Sbjct: 5 PDSLKPTLKIISRKPIVATDKELEENNRSHSAKLRVAEK 43 >gi|2739245|emb|CAA05400.1| hypothetical protein [Campylobacter jejuni] Length = 44 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 19/41 (46%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59 H+PVLL +V + LD T G GG+S + K Sbjct: 4 PHIPVLLNEVQKIFKNLKTGYFLDCTLGFGGHSEALLKNHP 44 >gi|255017463|ref|ZP_05289589.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL F2-515] Length = 33 Score = 66.3 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 21/29 (72%) Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 T+K +VP++E++ N R+RSAKLR + Sbjct: 3 TRKPIVPSEEELEQNNRARSAKLRVIEKI 31 >gi|309804772|ref|ZP_07698836.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|309809951|ref|ZP_07703799.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|308165882|gb|EFO68101.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308169739|gb|EFO71784.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] Length = 44 Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + I++K +V T +++ N RS SAKLR + Sbjct: 5 PDSLKPTLKIISRKPIVATNKELEENNRSHSAKLRVAEK 43 >gi|309806340|ref|ZP_07700353.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|308167324|gb|EFO69490.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] Length = 44 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + I++K +V T +++ N RS SAKLR + Sbjct: 5 PDSLKPTLKIISRKPIVATNKELEANNRSHSAKLRVAEK 43 >gi|148828290|ref|YP_001293043.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG] gi|148719532|gb|ABR00660.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG] Length = 43 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 I K + P+ ++ N RSRSA LR R Sbjct: 13 RIIGKAIQPSDAEIQVNPRSRSAILRVAERI 43 >gi|330950234|gb|EGH50494.1| hypothetical protein PSYCIT7_02272 [Pseudomonas syringae Cit 7] Length = 41 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGG 49 TM+S H+ VLLE+ + L LD TFG GG Sbjct: 2 TMNSGFT-----HITVLLEEAVEALAVRADGCYLDGTFGRGG 38 >gi|33866827|ref|NP_898386.1| hypothetical protein SYNW2297 [Synechococcus sp. WH 8102] gi|33639428|emb|CAE08812.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 83 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 17/96 (17%) Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +N+E+ L + L+ A L+ GGL+ ++SFHSLEDR VK F Sbjct: 1 MNDELGVLDRLLQQAPDWLEPGGLVGIISFHSLEDRRVKTAF-----------------L 43 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + IT+K VV T+E+ N RSRSAK R + Sbjct: 44 RDERLERITRKPVVATEEEEEANPRSRSAKWRLARK 79 >gi|307069557|ref|YP_003878034.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola CARI] gi|306482817|gb|ADM89688.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola CARI] Length = 285 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 30/302 (9%) Query: 21 VPVLLEKV---IALLNPAPGKVILDATFGAGGY--SRSFCKMGSNVIALDRDPFAVSCGQ 75 P+L+ ++ + + + +DAT G + + ++A ++D + + Sbjct: 7 FPILISEIFNILKNIKINKD-IFIDATMGMAKHLKKINKKIEIKKILAFEKDNLIFNRNK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 M+ F+ F + K ++ ++FDLG+S QI GFS++K+ LDM Sbjct: 66 IKMKKIFIVNDNFKNIFKI-LKLLKIKKINFILFDLGISLFQIIN-KNGFSYKKNSLLDM 123 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R++ A ++N + + +I +K +I + I+ R+ + T DL ++ Sbjct: 124 RINNKLNKPAYKILNNYKKEKILKIFNYYRNKKYFFKIVNLIIYNRKKKEIKKTFDLINI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+K +K N + ++ FQ +R ++N + L L++ G++I++SFHS+E Sbjct: 184 IKKVTNKNKIN--NYISKIFQIIRNYINKDN--LKNILKNIILKYLYKGIIIIISFHSIE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 D ++K F K I +P + ++ N +SRS+ +R Sbjct: 240 DNIIKNMFYKNKFKKKIKLLKI-----------------IPQKLEIFLNYKSRSSIMRII 282 Query: 315 MR 316 ++ Sbjct: 283 LK 284 >gi|213022917|ref|ZP_03337364.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 65 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K+F +S + + A + ++P +++VA N R+RS+ LR Sbjct: 2 KRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEKEVAENPRARSSVLRIAE 61 Query: 316 RTVE 319 RT Sbjct: 62 RTNA 65 >gi|213416741|ref|ZP_03349885.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 32 Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATF 45 H VLL++ + LN P + +D TF Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPDGIYIDGTF 32 >gi|291559257|emb|CBL38057.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [butyrate-producing bacterium SSC/2] Length = 180 Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G +DAT G GG + C V A D A+ +E + +K L Sbjct: 13 IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 72 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V ++F+LG Sbjct: 73 GHEHMKEYVKEMAVSCIMFNLGY 95 >gi|167767427|ref|ZP_02439480.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1] gi|167711402|gb|EDS21981.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1] Length = 184 Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G +DAT G GG + C V A D A+ +E + +K L Sbjct: 17 IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V ++F+LG Sbjct: 77 GHEHMKEYVKEMAVSCIMFNLGY 99 >gi|317496762|ref|ZP_07955092.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895774|gb|EFV17926.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium 5_1_63FAA] Length = 184 Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G +DAT G GG + C V A D A+ +E + +K L Sbjct: 17 IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V ++F+LG Sbjct: 77 GHEHMKEYVKEMAVSCIMFNLGY 99 >gi|255635058|gb|ACU17887.1| unknown [Glycine max] Length = 140 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59 T HVPV+L +V+ + + + +D T GA G+S + K Sbjct: 79 TDTKFSHVPVMLGEVLDVFSNSTLTSFVDCTLGAAGHSTASLKYFG 124 >gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] Length = 258 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQET 77 I LL P PG+ ILD G G G+ +R+ G++V ++DRDP ++ + Sbjct: 32 IDLLAPQPGERILD--LGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARAN 80 >gi|23099763|ref|NP_693229.1| hypothetical protein OB2308 [Oceanobacillus iheyensis HTE831] gi|22777993|dbj|BAC14264.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 191 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H LLE+ I+ G+V++DAT G G + + +V A D A+ ++ Sbjct: 16 HY--LLEESIS-----EGEVVIDATCGNGNDTLFLSRVVGKSGHVYAFDIQQQAIQNTKQ 68 Query: 77 TMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L + + ++DYV + G +F+LG Sbjct: 69 ALEKYHNNNVTLIHGSHALIEDYVQHDVIGGAIFNLGY 106 >gi|330950232|gb|EGH50492.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7] Length = 49 Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 16/46 (34%) Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 R++ I K + + N RSRSA +R + Sbjct: 2 MPRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 47 >gi|257870816|ref|ZP_05650469.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2] gi|257804980|gb|EEV33802.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2] Length = 186 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 23/157 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++V+ PG+ ++DAT G G+ V A D AV+ + Sbjct: 5 HT--LLQEVV-----KPGQTVVDATMGN-GHDTELLATLVGPEGKVYAFDIQEQAVTTTK 56 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + L V D ++ + G+ + + Sbjct: 57 ERLLAKGL-----------LPQVELIHQGHETVADYVPDAVHAAIFNLGYLPKSDKKIIT 105 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRI 172 + + ++ + ++ G E + Sbjct: 106 LPETTEQALQALIQRIVPCGRIILVCYYGHEGGPEEL 142 >gi|257437488|ref|ZP_05613243.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165] gi|257200056|gb|EEU98340.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165] Length = 285 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +DAT G GG + C++ G V+ D P A++ ++ + L + + L Sbjct: 125 IDATCGNGGDTAFLCRLVGEGGRVLGFDIQPEAIASTRQNLARKGLAAELHCDSHANLLQ 184 Query: 98 YVPDKGVDGVVFDLGV 113 YV VD V+F+ G Sbjct: 185 YVQPGTVDAVMFNFGW 200 >gi|282889803|ref|ZP_06298342.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500377|gb|EFB42657.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 204 Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSC-----GQETMRDYK 82 PG ++DAT G G+ VI +D P A++ +E + Sbjct: 23 VNPGDTVIDATCGN-GHDTLILAKLVLDSSSGCVIGMDVQPQAIAATREKLAKELSANQM 81 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E+ L A S + + V +V++LG Sbjct: 82 ERLHLHCACHS-IFPIQTENSVQLIVYNLGY 111 >gi|13537283|dbj|BAB40630.1| hypothetical protein [Vibrio campbellii] Length = 29 Score = 53.2 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 12/27 (44%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILD 42 H+ VLL + I L P + +D Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYID 29 >gi|313884623|ref|ZP_07818381.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8] gi|312620133|gb|EFR31564.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8] Length = 194 Score = 52.8 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 13/94 (13%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIAL 64 M SA+H++ LL +I P +DAT G G+ + + V+A Sbjct: 1 MQSALHYSHQ-----LLTALIDRF---PKGTFVDATLGN-GHDTAFILQKPNFHGQVLAF 51 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 D A++ Q+ + S +Q + Sbjct: 52 DIQDQALTNSQDRLNKLGLDPSRYQLIHDSHANL 85 >gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM 10507] gi|225037800|gb|EEG48046.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM 10507] Length = 187 Score = 52.8 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG + +DAT G G ++ C+ G V+A D A+ +E + E + L Sbjct: 17 QIRPGDLCIDATMGNGKDTQVLCELTGKGGKVLAFDIQECALQATRERLRRAGVPENYEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + +Y + V +VF+LG Sbjct: 77 YCRSHVHMDEYAKEGSVSCIVFNLGY 102 >gi|330904805|gb|EGH35377.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 48 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 48 GGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 GG+SR ++ D+DP A++ GQ + +F + Q F+ Sbjct: 1 GGHSRLILSQLGPDGRLLGFDKDPQAIATGQA-LAAEDGRFVIVQRIFA 48 >gi|260588799|ref|ZP_05854712.1| putative rRNA methylase [Blautia hansenii DSM 20583] gi|331084442|ref|ZP_08333545.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540882|gb|EEX21451.1| putative rRNA methylase [Blautia hansenii DSM 20583] gi|330401538|gb|EGG81122.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium 6_1_63FAA] Length = 188 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 L P + +DAT G G + C++ V+A D A+ C + ++++ + Sbjct: 16 LQVNPNGLYIDATMGNGYDTLFLCELAGESGKVLAFDVQEKAIMCTTKLLKEHNVENRAK 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L+ + + +Y VDG+ F+ G Sbjct: 76 LYLDSHENMDEYAEAGSVDGIYFNFGY 102 >gi|314940365|ref|ZP_07847527.1| rRNA methylase family protein [Enterococcus faecium TX0133a04] gi|313640405|gb|EFS04985.1| rRNA methylase family protein [Enterococcus faecium TX0133a04] Length = 196 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 31/206 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E + + E+ SLF L + + ++ + G+ + + Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGI-----------FNLGYLPKSDKAI 110 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILG------EEKQASRIAHAIVKRRQSAPFQT 187 + + +++ + + ++ G E + + + Sbjct: 111 ITMPETTRTAMEEILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYR 170 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRS 213 + + K +I A Sbjct: 171 FINQKNQPPILYCIEKKRKIKNAKHK 196 >gi|317471246|ref|ZP_07930611.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA] gi|316901293|gb|EFV23242.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA] Length = 183 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 G + +DAT G GG + C + VI + A+ + + L + Sbjct: 17 IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 76 Query: 94 QLQDYVPDKGVDGVVFDLGV 113 + Y V ++F+LG Sbjct: 77 NMDRYAEKGTVQAILFNLGY 96 >gi|167746441|ref|ZP_02418568.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662] gi|167653401|gb|EDR97530.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662] Length = 190 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 G + +DAT G GG + C + VI + A+ + + L + Sbjct: 24 IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 83 Query: 94 QLQDYVPDKGVDGVVFDLGV 113 + Y V ++F+LG Sbjct: 84 NMDRYAEKGTVQAILFNLGY 103 >gi|326407897|gb|ADZ64968.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 196 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L+ +I V++DAT G G ++ ++G+NV A D A++ ++ + D Sbjct: 11 MLKDII-----KTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGI 65 Query: 84 QFSLFQATFSQL 95 + +F+ S L Sbjct: 66 KNQIFEKNLSNL 77 >gi|281492941|ref|YP_003354921.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376593|gb|ADA66079.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 196 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L+ +I V++DAT G G ++ ++G+NV A D A++ ++ + D Sbjct: 11 MLKDII-----KTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGI 65 Query: 84 QFSLFQATFSQL 95 + +F+ S L Sbjct: 66 KNQIFEKNLSNL 77 >gi|291546556|emb|CBL19664.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. SR1/5] Length = 188 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR--DYKEQFSLFQ 89 PG + +DAT G G + + V+A D A+ +E ++ + E + L Sbjct: 20 PGDICIDATMGNGNDT-ALLSQLAGKRGRVLAFDIQKQALEHTKERLKRDNCPENYQLLL 78 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y ++ V + F+LG Sbjct: 79 ESHENMDVYAEEETVSCITFNLGY 102 >gi|295101193|emb|CBK98738.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Faecalibacterium prausnitzii L2-6] Length = 285 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 41 LDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +DAT G GG + C++ V+ D P A++ + + L + + L Sbjct: 125 IDATCGNGGDTAFLCRLAGPEGRVLGFDIQPEAITSTRARLEKQGLTAELICDSHANLLQ 184 Query: 98 YVPDKGVDGVVFDLGV 113 YV D V+F+ G Sbjct: 185 YVRSGTADIVMFNFGW 200 >gi|311069541|ref|YP_003974464.1| putative RNA methylase [Bacillus atrophaeus 1942] gi|310870058|gb|ADP33533.1| putative RNA methylase [Bacillus atrophaeus 1942] Length = 194 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 12/85 (14%) Query: 24 LLEKVI----ALL--NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSC 73 +L+K++ LL G +++DAT G G+ F +V A D A++ Sbjct: 2 MLKKILPYSKELLQMAADKGSIVVDATMGN-GHDTLFLAKLVGENGHVYAFDIQESALAA 60 Query: 74 GQETM-RDYKEQFSLFQATFSQLQD 97 +E + +Y + +LF + ++ + Sbjct: 61 TRERLGEEYGPRVTLFHKSHDKIAE 85 >gi|15674247|ref|NP_268422.1| hypothetical protein L141634 [Lactococcus lactis subsp. lactis Il1403] gi|12725336|gb|AAK06363.1|AE006455_9 hypothetical protein L141634 [Lactococcus lactis subsp. lactis Il1403] Length = 196 Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L+ +I V++DAT G G ++ ++G+NV A D A++ ++ + D Sbjct: 11 MLKDII-----KTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGI 65 Query: 84 QFSLFQATFSQL 95 + +F+ S+L Sbjct: 66 KNQIFEKNLSKL 77 >gi|229823229|ref|ZP_04449298.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271] gi|229787395|gb|EEP23509.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271] Length = 189 Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIAL 64 M A+H++ H LL +I P V +D T G G+ + V+ Sbjct: 1 MQRALHYS---HT--LLAALIQRF---PDGVYIDGTLGK-GHDTAFILSQPGFCGQVMGF 51 Query: 65 DRDPFAVSCGQETMRDYKEQFSLF--QATFSQLQDYVPD-KGVDGVVFDLGV 113 D A++ QE + + S A+ Q+ + + G +++LG Sbjct: 52 DIQDQALAWTQERLAKLPNKESAQLLLASHDQIHKLLAEVPQFSGAIYNLGY 103 >gi|291543851|emb|CBL16960.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. 18P13] Length = 190 Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG + +DAT G G+ + +V A D A++ + + ++ ++ Sbjct: 20 VKPGDLCIDATAGR-GHDTALLCGLVGETGHVTAFDIQSDAIASTNARLAELGYTDRATV 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 Q + S + +Y + + F+ G Sbjct: 79 IQGSHSTMGEYAQPGTISCITFNFGW 104 >gi|257866928|ref|ZP_05646581.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30] gi|257873261|ref|ZP_05652914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10] gi|257800984|gb|EEV29914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30] gi|257807425|gb|EEV36247.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10] Length = 187 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 21/148 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H LL++V+ PG+ +DAT G G + + V A D A+ ++ Sbjct: 5 HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + L + ++ + + G+ Q + Sbjct: 58 RLAEK-----------ELLAQVQLIHQGHETLAEVVSGPVHAAIFNLGYLPQGDKAIITL 106 Query: 137 MSCSGISASDVVNQANVKDLTRILGILG 164 + + ++ + K ++ G Sbjct: 107 PDTTKTALEALLTRLAPKGRIILVCYYG 134 >gi|310658196|ref|YP_003935917.1| RNA methylase [Clostridium sticklandii DSM 519] gi|308824974|emb|CBH21012.1| putative RNA methylase (modular protein) [Clostridium sticklandii] Length = 331 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G ++DAT G G + + V A D D AV +E ++ Q Sbjct: 18 IKSGDKVVDATLGNGNDAEFLAQIVGEQGRVYAFDIDSDAVEACKERLQSKYLQIDFILD 77 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + L + + +F+LG Sbjct: 78 SHENL-NIYVKDTISAAIFNLGY 99 >gi|229543460|ref|ZP_04432520.1| putative rRNA methylase [Bacillus coagulans 36D1] gi|229327880|gb|EEN93555.1| putative rRNA methylase [Bacillus coagulans 36D1] Length = 190 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-----E 83 G +DAT G G+ F G V A D P AV +E + E Sbjct: 17 AVKSGGFAIDATAGN-GHDTVFLAKRVGEGGKVFAFDIQPEAVRRTKERLEKEGLVTRAE 75 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F S+ + G VF+LG Sbjct: 76 LFCTGHEHASECIPAALHGKISGAVFNLGY 105 >gi|295110324|emb|CBL24277.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus obeum A2-162] Length = 187 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG + +DAT G G + C + +V A D A++ ++ + D ++L Sbjct: 17 QVQPGDICIDATMGNGNDTLLLCSLCQETGHVYAFDIQEQALAHTRQKLQNADVPTNYTL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + YV V +VF+LG Sbjct: 77 LLESHANMDHYVQPDSVSCIVFNLGY 102 >gi|257877004|ref|ZP_05656657.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20] gi|257811170|gb|EEV39990.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20] Length = 187 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 13/99 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H LL++V+ PG+ +DAT G G + + V A D A+ ++ Sbjct: 5 HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + Q L L + V +F+LG Sbjct: 58 RLAEKELLAQVQLIHQGHETLAEV-VSGPVHAAIFNLGY 95 >gi|226323861|ref|ZP_03799379.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758] gi|225207410|gb|EEG89764.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758] Length = 186 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ LE+ I G + +DAT G GG + C+ NV A D A++ +E Sbjct: 11 HI---LEEYIE-----EGDICIDATAGNGGDTEFLCQKVGETGNVYAFDVQEMAIAHTRE 62 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + L Q ++Q YV + ++F+ G Sbjct: 63 RLEKANLSTRAKLIQDGHEKMQTYVKE-EAKVIIFNFGY 100 >gi|23015692|ref|ZP_00055461.1| COG0500: SAM-dependent methyltransferases [Magnetospirillum magnetotacticum MS-1] Length = 176 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 8/99 (8%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD-------PFAVSCGQETMRDYKEQ 84 L P G +LD G G +SR F G V ALDRD A + Sbjct: 20 LVPK-GGTVLDLACGGGRHSRLFLDRGHKVTALDRDVAQAQLAEGAELIAADLEDGSAWP 78 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + + +Y+ ++ L + + Sbjct: 79 LAGRHFDAVVVTNYLWRPLFPAILGSLNPGGVLLYETFA 117 >gi|302832722|ref|XP_002947925.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f. nagariensis] gi|300266727|gb|EFJ50913.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f. nagariensis] Length = 425 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-----KEQF 85 PG +DAT G G+ F +V D A+S +E + + + Sbjct: 20 QPGDTAVDATCGN-GHDTLFLAQAVGPRGHVHGFDIQDAAISATRERVEAHLTASSRPTI 78 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 +L S L++ V F+LG Sbjct: 79 TLHHTCHSGLRELCGSGVARVVAFNLGY 106 >gi|194017839|ref|ZP_03056448.1| YtqB [Bacillus pumilus ATCC 7061] gi|194010491|gb|EDW20064.1| YtqB [Bacillus pumilus ATCC 7061] Length = 193 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 18/94 (19%) Query: 26 EKVIALLNPAPGKVILDATFGAG----------GYSRSFCKMGSNVIALDRDPFAVSCGQ 75 ++++ G +++DAT G G G+ V A D A+ + Sbjct: 11 KELLER-ACQKGDIVIDATMGNGHDTLYLADLVGH-------DGQVFAFDVQEEAIQQTR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 + + + L +L ++P + Sbjct: 63 KRLGEGYPYVHLIHDGHEKLAQHLPRDVYGHISG 96 >gi|153812378|ref|ZP_01965046.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174] gi|149831540|gb|EDM86627.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174] Length = 187 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG + +DAT G G + S C +V A D A+ ++ + D + ++L Sbjct: 17 QVQPGDICIDATMGNGNDTLLLSSLCGKDGHVFAFDIQEEALINTRKRLMEADAPQNYTL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + ++ YV V + F+LG Sbjct: 77 LLESHTNIEHYVDPGTVSCITFNLGY 102 >gi|153854162|ref|ZP_01995470.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814] gi|149753211|gb|EDM63142.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814] Length = 190 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLF--QA 90 G +DAT G G + C++ V+A D A+ +E ++ + ++ Sbjct: 23 EGGYYIDATMGKGNDTLFLCELAGEKGKVLAFDIQQEALDVTKELLKTHGKEMQAELILD 82 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + Y + D + F+ G Sbjct: 83 GHEHMDRYAGKESADVICFNFGY 105 >gi|116492413|ref|YP_804148.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC 25745] gi|116102563|gb|ABJ67706.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 187 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +++ PG V++DAT G G+ F V + D A+ + Sbjct: 12 LLTEIV-----QPGDVVIDATMGN-GHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFE 65 Query: 80 DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A+ Q+ YV + + G +F+LG Sbjct: 66 HQHQTLINVELIHASHDQIDHYVTE-PITGAIFNLGY 101 >gi|295103806|emb|CBL01350.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Faecalibacterium prausnitzii SL3/3] Length = 288 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94 +DAT G GG + C + V+A D P A+ + + +++SL + + Sbjct: 125 VDATCGNGGDTAFLCNLTAPAGRVLAFDVQPEAIRSTRTRLEQANVPADRYSLVCGSHAD 184 Query: 95 LQDYVPDKGVDGVVFDLGV 113 L YV D V+F+ G Sbjct: 185 LLQYVQPGTADAVMFNFGW 203 >gi|125625315|ref|YP_001033798.1| hypothetical protein llmg_2562 [Lactococcus lactis subsp. cremoris MG1363] gi|124494123|emb|CAL99124.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072129|gb|ADJ61529.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp. cremoris NZ9000] Length = 211 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 +L+ +I + V++DAT G G + ++G+ V A D A+ ++ + + Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLEN 62 >gi|116513225|ref|YP_812132.1| hypothetical protein LACR_2602 [Lactococcus lactis subsp. cremoris SK11] gi|116108879|gb|ABJ74019.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 211 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 +L+ +I + V++DAT G G + ++G+ V A D A+ ++ + + Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLEN 62 >gi|159477717|ref|XP_001696955.1| rRNA methylase [Chlamydomonas reinhardtii] gi|158274867|gb|EDP00647.1| rRNA methylase [Chlamydomonas reinhardtii] Length = 293 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-----KEQF 85 PG +DAT G G+ F +VI D A + +E + + + + Sbjct: 111 RPGDTAVDATMGN-GHDTLFLAQAVGPTGHVIGFDIQEAATASTRERLESHLSAEVRPRL 169 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 SL A S+LQ+ V F+LG Sbjct: 170 SLHTACHSRLQELAGSGRARVVAFNLGY 197 >gi|257880445|ref|ZP_05660098.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883258|ref|ZP_05662911.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886333|ref|ZP_05665986.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257891525|ref|ZP_05671178.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894534|ref|ZP_05674187.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257814673|gb|EEV43431.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257818916|gb|EEV46244.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822189|gb|EEV49319.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257827885|gb|EEV54511.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257830913|gb|EEV57520.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] Length = 189 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%) Query: 13 IHHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRD 67 + H LL++++ PG ++DAT G G+ F +V + D Sbjct: 1 MMLQTALHFSHTLLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQ 54 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113 A+ +E + + E+ SLF L + + ++ +F+LG Sbjct: 55 QQAIDATRERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 103 >gi|293563986|ref|ZP_06678393.1| methyltransferase [Enterococcus faecium E1162] gi|291604076|gb|EFF33603.1| methyltransferase [Enterococcus faecium E1162] Length = 189 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113 E + + E+ SLF L + + ++ +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|293553710|ref|ZP_06674333.1| methyltransferase [Enterococcus faecium E1039] gi|291602136|gb|EFF32365.1| methyltransferase [Enterococcus faecium E1039] Length = 173 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113 E + + E+ SLF L + + ++ +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|258614091|ref|ZP_05711861.1| hypothetical protein EfaeD_00112 [Enterococcus faecium DO] Length = 187 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113 E + + E+ SLF L + + ++ +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|69244085|ref|ZP_00602621.1| Putative rRNA methylase [Enterococcus faecium DO] gi|260562444|ref|ZP_05832954.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261206890|ref|ZP_05921580.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289567067|ref|ZP_06447464.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293569441|ref|ZP_06680737.1| methyltransferase [Enterococcus faecium E1071] gi|294613891|ref|ZP_06693829.1| methyltransferase [Enterococcus faecium E1636] gi|294619127|ref|ZP_06698619.1| methyltransferase [Enterococcus faecium E1679] gi|294622187|ref|ZP_06701252.1| methyltransferase [Enterococcus faecium U0317] gi|314943338|ref|ZP_07850113.1| rRNA methylase family protein [Enterococcus faecium TX0133C] gi|314949262|ref|ZP_07852608.1| rRNA methylase family protein [Enterococcus faecium TX0082] gi|314953920|ref|ZP_07856778.1| rRNA methylase family protein [Enterococcus faecium TX0133A] gi|314993190|ref|ZP_07858571.1| rRNA methylase family protein [Enterococcus faecium TX0133B] gi|314997352|ref|ZP_07862309.1| rRNA methylase family protein [Enterococcus faecium TX0133a01] gi|68196542|gb|EAN10968.1| Putative rRNA methylase [Enterococcus faecium DO] gi|260073129|gb|EEW61474.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260078868|gb|EEW66569.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161146|gb|EFD09049.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291587861|gb|EFF19713.1| methyltransferase [Enterococcus faecium E1071] gi|291593256|gb|EFF24827.1| methyltransferase [Enterococcus faecium E1636] gi|291594613|gb|EFF25998.1| methyltransferase [Enterococcus faecium E1679] gi|291598284|gb|EFF29376.1| methyltransferase [Enterococcus faecium U0317] gi|313588566|gb|EFR67411.1| rRNA methylase family protein [Enterococcus faecium TX0133a01] gi|313592304|gb|EFR71149.1| rRNA methylase family protein [Enterococcus faecium TX0133B] gi|313594119|gb|EFR72964.1| rRNA methylase family protein [Enterococcus faecium TX0133A] gi|313597950|gb|EFR76795.1| rRNA methylase family protein [Enterococcus faecium TX0133C] gi|313644361|gb|EFS08941.1| rRNA methylase family protein [Enterococcus faecium TX0082] Length = 188 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGV-VFDLGV 113 E + + E+ SLF L + + ++ +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|149181473|ref|ZP_01859969.1| SAM-dependent methyltransferase, MraW methylase family protein [Bacillus sp. SG-1] gi|148850874|gb|EDL65028.1| SAM-dependent methyltransferase, MraW methylase family protein [Bacillus sp. SG-1] Length = 190 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-----E 83 PG + +DAT G G+ F V D A+ +E ++ + Sbjct: 17 AVNPGDIAIDATLGN-GHDTLFLAQLVGENGRVYGFDIQEEALFNTRERLQTHNLQERVT 75 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F T + V V G +F+LG Sbjct: 76 LFKQGHETVGNVVPPVHYGKVTGAIFNLGY 105 >gi|312868433|ref|ZP_07728633.1| putative rRNA methylase [Streptococcus parasanguinis F0405] gi|311096178|gb|EFQ54422.1| putative rRNA methylase [Streptococcus parasanguinis F0405] Length = 185 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKE 83 LE+VI V++DAT G G+ +F V A D A+ QE + Sbjct: 12 LEEVIT-----KEDVVVDATMGN-GHDTAFLAQLAGQVYAFDIQEQALVNTQERLEKLGL 65 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 Q Q D + + + S + ++ G Sbjct: 66 QHVQLILDGHQHVDQYVETLKAAIFNLGYLPSADKSVITLPVTTIEAMEKICARLEKGGR 125 Query: 144 ASDVVNQANV 153 + ++ + Sbjct: 126 MAIMIYYGHE 135 >gi|319651929|ref|ZP_08006052.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2] gi|317396421|gb|EFV77136.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2] Length = 190 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 12/80 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMR 79 LLEK ++ PG +++DAT G G+ F V D AV + + Sbjct: 13 LLEKAVS-----PGDIVIDATLGN-GHDTVFLADLVGHNGRVYGFDIQEEAVQNTKTRLA 66 Query: 80 DYK--EQFSLFQATFSQLQD 97 D+ ++ +LF + + Sbjct: 67 DHDLSDRATLFHTGHEFILE 86 >gi|134298946|ref|YP_001112442.1| putative rRNA methylase [Desulfotomaculum reducens MI-1] gi|134051646|gb|ABO49617.1| putative rRNA methylase [Desulfotomaculum reducens MI-1] Length = 185 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 14/96 (14%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-- 78 L +++ G + +D T G G+ V A D A+ ++ + Sbjct: 10 LAEIL-----RNGDLAVDGTMGN-GHDTLLLAQLVGSQGKVYAFDIQEQAIDNTRQRLVS 63 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++ L ++ Y + + +++LG Sbjct: 64 QNLFDQRVKLIHDGHQNIKHY-IEHPIRAAIYNLGY 98 >gi|157693437|ref|YP_001487899.1| rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|157682195|gb|ABV63339.1| possible rRNA methyltransferase [Bacillus pumilus SAFR-032] Length = 191 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY 81 ++++ G +++DAT G G+ + V A D A+ ++ + + Sbjct: 11 KELLER-ACQKGDIVIDATMGN-GHDTLYLADLVGPDGQVFAFDVQEEAIEQTRKRLGEG 68 Query: 82 KEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGV 113 L +L + + + G VF+LG Sbjct: 69 YPYVHLIHDGHEKLAHHLPRDVYEQISGAVFNLGY 103 >gi|268316762|ref|YP_003290481.1| putative rRNA methylase [Rhodothermus marinus DSM 4252] gi|262334296|gb|ACY48093.1| putative rRNA methylase [Rhodothermus marinus DSM 4252] Length = 187 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 11/99 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 L +++A + PG++ +DAT G G+ F +V D A++ + + Sbjct: 2 LAHRIVASV-LQPGEMAVDATVGN-GHDTLFLARQVGPQGHVYGFDVQEEALARTRRRLE 59 Query: 80 DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + ++ + V+F+LG Sbjct: 60 EAGLHERVTLLRMGHEHMAKAVPVAWHGRIGAVMFNLGY 98 >gi|332687128|ref|YP_004456902.1| SAM-dependent methyltransferase, MraW methylase family [Melissococcus plutonius ATCC 35311] gi|332371137|dbj|BAK22093.1| SAM-dependent methyltransferase, MraW methylase family [Melissococcus plutonius ATCC 35311] Length = 187 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 13/126 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 LL ++I PG ++DAT G G + K+ V A D A+ ++ + + Sbjct: 12 LLNEII-----CPGDHVVDATMGNGNDTLFLAKLVGDKGKVYAFDIQKQALERTRQRLIE 66 Query: 81 -----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E F T Q+ S + + Q L + Sbjct: 67 NQVIQCTELFQQGHETIEQVLPIETTLSAAIFNLGYLPKSDKEIVTLPETTIQAIEQLLI 126 Query: 136 RMSCSG 141 R+ G Sbjct: 127 RLKSKG 132 >gi|309389271|gb|ADO77151.1| rRNA methylase [Halanaerobium praevalens DSM 2228] Length = 190 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 N G +++DAT G G ++ K V A D A+ + ++++ E+ L Sbjct: 20 NIDEGDLVIDATAGNGYDTKFLAELVKKKGKVYAFDLQAKAIENTNKLLKEHNLLERVEL 79 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 FQ L Y +K + V+F+LG Sbjct: 80 FQTGHQNLDQY-LNKKIKAVIFNLGY 104 >gi|237746404|ref|ZP_04576884.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377755|gb|EEO27846.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 283 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 V+ LL P G+ ILD GAG ++ K G V+ +D +P AV+ +E D ++ + Sbjct: 59 VLELLAPKAGERILDLGCGAGVWAEEMMKRGCEVVGVDINPQAVAAARERGVDARQVNAE 118 Query: 88 FQATFSQLQDYVPDKGVDGV 107 + + + + Sbjct: 119 SMTFHDEFDAVFSNASLHWM 138 >gi|299823066|ref|ZP_07054952.1| rRNA methyltransferase [Listeria grayi DSM 20601] gi|299816595|gb|EFI83833.1| rRNA methyltransferase [Listeria grayi DSM 20601] Length = 187 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++D T G G + ++ V A D A+ ++ + + +L Sbjct: 17 AIRPGGQVIDGTCGNGNDTVLLAELVGENGQVFAFDIQSQAIEATRQKLTEQNLLAPVTL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 Q + Q+ + + +F+LG Sbjct: 77 IQDSHDQISE-HVKTPIQAAIFNLGY 101 >gi|89099660|ref|ZP_01172534.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911] gi|89085603|gb|EAR64730.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911] Length = 190 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 +PG +++DAT G G+ + V D A+ + + + E+ + Sbjct: 17 AVSPGDIVVDATLGN-GHDALYLANLVGPNGRVYGFDIQEQAIHNSRIRLSGHGMEERAT 75 Query: 87 LFQATFSQLQDYV---PDKGVDGVVFDLGV 113 LF + QL + + K + +F+LG Sbjct: 76 LFHSGHEQLLECIPPVHHKKIAAAIFNLGY 105 >gi|225023758|ref|ZP_03712950.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC 23834] gi|224943640|gb|EEG24849.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC 23834] Length = 220 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 G + +DAT G G+ F G V A D P A++ Q ++ +E+ + + Sbjct: 45 EGGIAVDATAGN-GHDTLFLAQCVGSGGRVYAFDIQPQALAATQARLQAAREERQVRLIS 103 Query: 92 FSQLQ-DYVPDKGVDGVVFDLGV 113 S + ++ V +VF+ G Sbjct: 104 ASHADLTHYVNEPVHSIVFNCGY 126 >gi|325568219|ref|ZP_08144627.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755] gi|325158252|gb|EGC70404.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755] Length = 192 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 13/99 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H LL++V+ PG +DAT G G + + V A D A+ ++ Sbjct: 10 HT--LLKEVV-----QPGHTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 62 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++ Q L L D V +F+LG Sbjct: 63 RLTEKELLPQVQLIHQGHETLADV-VSGPVHAAIFNLGY 100 >gi|189426228|ref|YP_001953405.1| rRNA methylase [Geobacter lovleyi SZ] gi|189422487|gb|ACD96885.1| putative rRNA methylase [Geobacter lovleyi SZ] Length = 200 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 13 IHHTIGDHVPVLLEKV-IALLN----PAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 + T H PVL V ++ L G ++DAT G G + ++ +V A Sbjct: 1 MPSTKAPH-PVLRGPVPLSHLLLQRFIQSGSRVIDATCGNGKDTLLLAELVGETGHVWAF 59 Query: 65 DRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D A+ + + + ++ SL A +L + + GVVF+LG Sbjct: 60 DIQQEALDRTAQRLAEQNLQQRVSLLHAGHERLLEL-VKPPLHGVVFNLGW 109 >gi|257897586|ref|ZP_05677239.1| rRNA methylase [Enterococcus faecium Com12] gi|257834151|gb|EEV60572.1| rRNA methylase [Enterococcus faecium Com12] Length = 181 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%) Query: 13 IHHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRD 67 + H LL++++ PG ++DAT G G+ F +V + D Sbjct: 1 MMLQTALHFSHTLLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQ 54 Query: 68 PFAVSCGQETMRDYK 82 A+ +E + ++ Sbjct: 55 QQAIDATREKLEQHQ 69 >gi|293377844|ref|ZP_06624028.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|292643528|gb|EFF61654.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 188 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK 82 E + ++ Sbjct: 62 EKLEQHQ 68 >gi|293571991|ref|ZP_06683004.1| SAM-dependent methyltransferase [Enterococcus faecium E980] gi|291607915|gb|EFF37224.1| SAM-dependent methyltransferase [Enterococcus faecium E980] Length = 188 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK 82 E + ++ Sbjct: 62 EKLEQHQ 68 >gi|257900323|ref|ZP_05679976.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257838235|gb|EEV63309.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 189 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 11 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62 Query: 76 ETMRDYK 82 E + ++ Sbjct: 63 EKLEQHQ 69 >gi|227550265|ref|ZP_03980314.1| rRNA methylase [Enterococcus faecium TX1330] gi|227180590|gb|EEI61562.1| rRNA methylase [Enterococcus faecium TX1330] Length = 189 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDYK 82 E + ++ Sbjct: 62 EKLEQHQ 68 >gi|257888992|ref|ZP_05668645.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257825055|gb|EEV51978.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] Length = 189 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%) Query: 13 IHHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRD 67 + H LL++++ PG ++DAT G G+ F +V + D Sbjct: 1 MMLQTALHFSHTLLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQ 54 Query: 68 PFAVSCGQETMRDYK 82 A+ +E + ++ Sbjct: 55 QQAIDATREKLEQHQ 69 >gi|160943569|ref|ZP_02090802.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii M21/2] gi|158445248|gb|EDP22251.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii M21/2] Length = 328 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94 +DAT G GG + C + V+A D P A+ + + E++ L + + Sbjct: 165 VDATCGNGGDTAFLCGLTAPAGRVLAFDVQPEAIRSTRARLEKANVPAERYELICGSHAD 224 Query: 95 LQDYVPDKGVDGVVFDLGV 113 L YV D V+F+ G Sbjct: 225 LLQYVQPGTADAVMFNFGW 243 >gi|297621034|ref|YP_003709171.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044] gi|297376335|gb|ADI38165.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044] Length = 204 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETM-----RDYK 82 PG +++DAT G G+ + A D A++ ++++ + Sbjct: 23 VKPGDIVIDATCGN-GHDTLVLAQLALTVESGKLYACDLQKDAINSTKQSLLEKLEKKIV 81 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E+ S D + V ++LG Sbjct: 82 ERIFFVHGCHSSFPDEIQPNSVRLAAYNLGY 112 >gi|327474550|gb|EGF19955.1| rRNA methylase [Streptococcus sanguinis SK408] Length = 183 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 22/144 (15%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ ++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDTVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 L + L Y +F+LG + R + Sbjct: 66 NNVQLILSGHETLDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 + V I+ G E Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135 >gi|239905436|ref|YP_002952175.1| hypothetical protein DMR_07980 [Desulfovibrio magneticus RS-1] gi|239795300|dbj|BAH74289.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 209 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 20/116 (17%) Query: 9 MSS--AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVI 62 M++ T H+ L + + PG + +DAT G G+ + V Sbjct: 1 MAARITASLTFLQHI---LAEAV-----RPGDLAVDATVGN-GHDTALLARLVGPSGLVH 51 Query: 63 ALDRDPFAVSCGQETMRDYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D A++ + + L +++ VVF+LG Sbjct: 52 GFDVQAEAIASAERLLAAAGLAERVRLHVLGHERLAEVLPEADHGRATAVVFNLGY 107 >gi|327462947|gb|EGF09268.1| rRNA methylase [Streptococcus sanguinis SK1] Length = 183 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 22/144 (15%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEADL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 + L + + Y +F+LG + R + Sbjct: 66 DNVQLILSGHETMDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 + V I+ G E Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135 >gi|297528996|ref|YP_003670271.1| rRNA methylase [Geobacillus sp. C56-T3] gi|297252248|gb|ADI25694.1| putative rRNA methylase [Geobacillus sp. C56-T3] Length = 195 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LL++ + G + +DAT G G+ + + +V D P A++ + Sbjct: 13 LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66 Query: 80 DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ F + + + G VF+LG Sbjct: 67 EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105 >gi|261418138|ref|YP_003251820.1| rRNA methylase [Geobacillus sp. Y412MC61] gi|319767902|ref|YP_004133403.1| rRNA methylase [Geobacillus sp. Y412MC52] gi|261374595|gb|ACX77338.1| putative rRNA methylase [Geobacillus sp. Y412MC61] gi|317112768|gb|ADU95260.1| rRNA methylase [Geobacillus sp. Y412MC52] Length = 195 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LL++ + G + +DAT G G+ + + +V D P A++ + Sbjct: 13 LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66 Query: 80 DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ F + + + G VF+LG Sbjct: 67 EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105 >gi|81429048|ref|YP_396048.1| putative methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610690|emb|CAI55741.1| Putative methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 186 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 21/196 (10%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 + H LL++ PG V++DAT G G + + +V D A+ Sbjct: 6 PSSFAHF--LLDQ-----AIRPGDVVIDATVGHGDDTLFLAEKVADYGHVYGFDIQKEAL 58 Query: 72 SCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + Q+ + + + Q + D V +F LG S + Sbjct: 59 ATCQKRLTTANLSQQVSLINQGHERIITALPADLKVQAAIFSLGSLSSETSQDVT----- 113 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + +S S + + + EE+ +A + + Sbjct: 114 ---LPNTTISAYHQVLSRLNRGGLLLFIIDNHFFKSEEEIHYLVADLTRLNPERYAVRHF 170 Query: 189 QDLSSLIQKTVYFSKN 204 Q ++ + + + K Sbjct: 171 QGVNQDVGQLLTVIKK 186 >gi|153953679|ref|YP_001394444.1| rRNA methylase [Clostridium kluyveri DSM 555] gi|219854301|ref|YP_002471423.1| hypothetical protein CKR_0958 [Clostridium kluyveri NBRC 12016] gi|146346560|gb|EDK33096.1| Predicted rRNA methylase [Clostridium kluyveri DSM 555] gi|219568025|dbj|BAH06009.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 189 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 18/140 (12%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G + +DAT G G + V A D A+ Q+ + + L Sbjct: 20 KLKEGDIAVDATMGNGNDTVFLAEIVGQSGKVYAFDIQQDAIKNTQKKIAYKNLFKYVKL 79 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147 + +Y+ + V V+F+LG + + R + I+ Sbjct: 80 INDGHENMDNYISE-KVKLVIFNLGY------------LPKGEHSITTRADTTLIALKKA 126 Query: 148 VNQANVKDLTRILGILGEEK 167 +N + + ++ G E+ Sbjct: 127 LNLIDKNGVVILVVYYGHEQ 146 >gi|226312973|ref|YP_002772867.1| hypothetical protein BBR47_33860 [Brevibacillus brevis NBRC 100599] gi|226095921|dbj|BAH44363.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 186 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 20/140 (14%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA 90 G+ ++DAT G G + F VIA D P A+ +E + + + A Sbjct: 20 GETVVDATMGNGNDT-LFLAQLVQEEGKVIAFDIQPQAIEKTRERLEREGLANRVEMKLA 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV-----------SSMQIDCGDRGFSFQKSGPLDMRMSC 139 + ++ + ++F+LG +S I G + G + M Sbjct: 79 SHEEIDKL--EILAAAIMFNLGYLPGGDKEITTQASSTIQAIQSGLRVLRPGGIMTVMIY 136 Query: 140 SGISASDVVNQANVKDLTRI 159 G A + +A + Sbjct: 137 WGHPAGETEKEAVEAFCHEL 156 >gi|126699666|ref|YP_001088563.1| hypothetical protein CD2049 [Clostridium difficile 630] gi|254975637|ref|ZP_05272109.1| hypothetical protein CdifQC_10019 [Clostridium difficile QCD-66c26] gi|255093024|ref|ZP_05322502.1| hypothetical protein CdifC_10279 [Clostridium difficile CIP 107932] gi|255101181|ref|ZP_05330158.1| hypothetical protein CdifQCD-6_10259 [Clostridium difficile QCD-63q42] gi|255307055|ref|ZP_05351226.1| hypothetical protein CdifA_10732 [Clostridium difficile ATCC 43255] gi|255314766|ref|ZP_05356349.1| hypothetical protein CdifQCD-7_10477 [Clostridium difficile QCD-76w55] gi|255517441|ref|ZP_05385117.1| hypothetical protein CdifQCD-_10066 [Clostridium difficile QCD-97b34] gi|255650551|ref|ZP_05397453.1| hypothetical protein CdifQCD_10241 [Clostridium difficile QCD-37x79] gi|255656020|ref|ZP_05401429.1| hypothetical protein CdifQCD-2_10044 [Clostridium difficile QCD-23m63] gi|260683649|ref|YP_003214934.1| hypothetical protein CD196_1913 [Clostridium difficile CD196] gi|260687309|ref|YP_003218443.1| hypothetical protein CDR20291_1956 [Clostridium difficile R20291] gi|296450551|ref|ZP_06892305.1| rRNA methylase [Clostridium difficile NAP08] gi|296879327|ref|ZP_06903322.1| rRNA methylase [Clostridium difficile NAP07] gi|306520499|ref|ZP_07406846.1| hypothetical protein CdifQ_11806 [Clostridium difficile QCD-32g58] gi|115251103|emb|CAJ68934.1| putative rRNA methylase [Clostridium difficile] gi|260209812|emb|CBA63659.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213326|emb|CBE04904.1| conserved hypothetical protein [Clostridium difficile R20291] gi|296260626|gb|EFH07467.1| rRNA methylase [Clostridium difficile NAP08] gi|296429870|gb|EFH15722.1| rRNA methylase [Clostridium difficile NAP07] Length = 192 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G +++DAT G G +R + V A D A+ ++ + ++ L Sbjct: 22 INEGDIVIDATMGNGYDTRYLAEKVGEKGFVYAFDIQEEAIKSTRKKLEKEGYTDRVKLI 81 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 ++ Y+ + V V+F+LG Sbjct: 82 FDGHEKMNQYIKE-EVSCVLFNLGY 105 >gi|320547357|ref|ZP_08041648.1| rRNA methylase [Streptococcus equinus ATCC 9812] gi|320448055|gb|EFW88807.1| rRNA methylase [Streptococcus equinus ATCC 9812] Length = 182 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ G V +DAT G G + + V A D A+ QE + Sbjct: 13 LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q D + + +F+LG Sbjct: 68 NAQLILDGHQNLDKYVSEPIRAAIFNLGY 96 >gi|171780242|ref|ZP_02921146.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281590|gb|EDT47025.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 182 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ G V +DAT G G + + V A D A+ QE + Sbjct: 13 LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q D + + +F+LG Sbjct: 68 NAQLILDGHQNLDKYVSEPIRAAIFNLGY 96 >gi|296875985|ref|ZP_06900044.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912] gi|296433060|gb|EFH18848.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912] Length = 185 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKE 83 L +VI V++DAT G G+ +F K+ V A D A+ QE + Sbjct: 12 LAEVIT-----KEDVVVDATMGN-GHDTAFLAKLAGQVYAFDIQEQALVNTQERLEKLGL 65 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 Q Q D + + +F+LG Sbjct: 66 QHVQLILDGHQHVDQYVE-TLKAAIFNLGY 94 >gi|295113991|emb|CBL32628.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Enterococcus sp. 7L76] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGSSGEVFAFDIQKEALINTEQKL 64 >gi|257418397|ref|ZP_05595391.1| SAM-dependent methyltransferase [Enterococcus faecalis T11] gi|257160225|gb|EEU90185.1| SAM-dependent methyltransferase [Enterococcus faecalis T11] gi|315148160|gb|EFT92176.1| rRNA methylase family protein [Enterococcus faecalis TX4244] gi|315166998|gb|EFU11015.1| rRNA methylase family protein [Enterococcus faecalis TX1341] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64 >gi|257415363|ref|ZP_05592357.1| SAM-dependent methyltransferase [Enterococcus faecalis AR01/DG] gi|257157191|gb|EEU87151.1| SAM-dependent methyltransferase [Enterococcus faecalis ARO1/DG] gi|315170873|gb|EFU14890.1| rRNA methylase family protein [Enterococcus faecalis TX1342] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64 >gi|229546650|ref|ZP_04435375.1| rRNA methylase [Enterococcus faecalis TX1322] gi|256854344|ref|ZP_05559708.1| SAM-dependent methyltransferase [Enterococcus faecalis T8] gi|307276225|ref|ZP_07557354.1| rRNA methylase family protein [Enterococcus faecalis TX2134] gi|307296183|ref|ZP_07576012.1| rRNA methylase family protein [Enterococcus faecalis TX0411] gi|229308217|gb|EEN74204.1| rRNA methylase [Enterococcus faecalis TX1322] gi|256709904|gb|EEU24948.1| SAM-dependent methyltransferase [Enterococcus faecalis T8] gi|306496114|gb|EFM65695.1| rRNA methylase family protein [Enterococcus faecalis TX0411] gi|306507081|gb|EFM76222.1| rRNA methylase family protein [Enterococcus faecalis TX2134] gi|315029896|gb|EFT41828.1| rRNA methylase family protein [Enterococcus faecalis TX4000] gi|315159950|gb|EFU03967.1| rRNA methylase family protein [Enterococcus faecalis TX0312] gi|323479986|gb|ADX79425.1| rRNA methylase family protein [Enterococcus faecalis 62] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64 >gi|229548736|ref|ZP_04437461.1| rRNA methylase [Enterococcus faecalis ATCC 29200] gi|255971252|ref|ZP_05421838.1| SAM-dependent methyltransferase [Enterococcus faecalis T1] gi|255973871|ref|ZP_05424457.1| SAM-dependent methyltransferase [Enterococcus faecalis T2] gi|256617679|ref|ZP_05474525.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200] gi|256761557|ref|ZP_05502137.1| SAM-dependent methyltransferase [Enterococcus faecalis T3] gi|256957340|ref|ZP_05561511.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5] gi|256964373|ref|ZP_05568544.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704] gi|257077664|ref|ZP_05572025.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1] gi|257081052|ref|ZP_05575413.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol] gi|257083713|ref|ZP_05578074.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1] gi|257086149|ref|ZP_05580510.1| SAM-dependent methyltransferase [Enterococcus faecalis D6] gi|257089221|ref|ZP_05583582.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188] gi|257421046|ref|ZP_05598036.1| SAM-dependent methyltransferase [Enterococcus faecalis X98] gi|294779821|ref|ZP_06745207.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|307270146|ref|ZP_07551463.1| rRNA methylase family protein [Enterococcus faecalis TX4248] gi|307271402|ref|ZP_07552677.1| rRNA methylase family protein [Enterococcus faecalis TX0855] gi|307284441|ref|ZP_07564604.1| rRNA methylase family protein [Enterococcus faecalis TX0860] gi|307289509|ref|ZP_07569455.1| rRNA methylase family protein [Enterococcus faecalis TX0109] gi|312901667|ref|ZP_07760937.1| rRNA methylase family protein [Enterococcus faecalis TX0470] gi|312904994|ref|ZP_07764129.1| rRNA methylase family protein [Enterococcus faecalis TX0635] gi|312951836|ref|ZP_07770726.1| rRNA methylase family protein [Enterococcus faecalis TX0102] gi|229306129|gb|EEN72125.1| rRNA methylase [Enterococcus faecalis ATCC 29200] gi|255962270|gb|EET94746.1| SAM-dependent methyltransferase [Enterococcus faecalis T1] gi|255966743|gb|EET97365.1| SAM-dependent methyltransferase [Enterococcus faecalis T2] gi|256597206|gb|EEU16382.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200] gi|256682808|gb|EEU22503.1| SAM-dependent methyltransferase [Enterococcus faecalis T3] gi|256947836|gb|EEU64468.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5] gi|256954869|gb|EEU71501.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704] gi|256985694|gb|EEU72996.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1] gi|256989082|gb|EEU76384.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol] gi|256991743|gb|EEU79045.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1] gi|256994179|gb|EEU81481.1| SAM-dependent methyltransferase [Enterococcus faecalis D6] gi|256998033|gb|EEU84553.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188] gi|257162870|gb|EEU92830.1| SAM-dependent methyltransferase [Enterococcus faecalis X98] gi|294453095|gb|EFG21511.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|306499527|gb|EFM68898.1| rRNA methylase family protein [Enterococcus faecalis TX0109] gi|306503249|gb|EFM72502.1| rRNA methylase family protein [Enterococcus faecalis TX0860] gi|306511934|gb|EFM80929.1| rRNA methylase family protein [Enterococcus faecalis TX0855] gi|306513515|gb|EFM82130.1| rRNA methylase family protein [Enterococcus faecalis TX4248] gi|310630187|gb|EFQ13470.1| rRNA methylase family protein [Enterococcus faecalis TX0102] gi|310631690|gb|EFQ14973.1| rRNA methylase family protein [Enterococcus faecalis TX0635] gi|311291278|gb|EFQ69834.1| rRNA methylase family protein [Enterococcus faecalis TX0470] gi|315027553|gb|EFT39485.1| rRNA methylase family protein [Enterococcus faecalis TX2137] gi|315031264|gb|EFT43196.1| rRNA methylase family protein [Enterococcus faecalis TX0017] gi|315035316|gb|EFT47248.1| rRNA methylase family protein [Enterococcus faecalis TX0027] gi|315153165|gb|EFT97181.1| rRNA methylase family protein [Enterococcus faecalis TX0031] gi|315154866|gb|EFT98882.1| rRNA methylase family protein [Enterococcus faecalis TX0043] gi|315164614|gb|EFU08631.1| rRNA methylase family protein [Enterococcus faecalis TX1302] gi|315578129|gb|EFU90320.1| rRNA methylase family protein [Enterococcus faecalis TX0630] gi|327534381|gb|AEA93215.1| rRNA methylase [Enterococcus faecalis OG1RF] gi|329577652|gb|EGG59082.1| putative rRNA methylase [Enterococcus faecalis TX1467] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64 >gi|29375384|ref|NP_814538.1| hypothetical protein EF0794 [Enterococcus faecalis V583] gi|227517764|ref|ZP_03947813.1| rRNA methylase [Enterococcus faecalis TX0104] gi|227554910|ref|ZP_03984957.1| rRNA methylase [Enterococcus faecalis HH22] gi|256959922|ref|ZP_05564093.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96] gi|293385211|ref|ZP_06631028.1| putative rRNA methylase [Enterococcus faecalis R712] gi|293388325|ref|ZP_06632838.1| putative rRNA methylase [Enterococcus faecalis S613] gi|300859754|ref|ZP_07105842.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11] gi|312907134|ref|ZP_07766126.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512] gi|312979287|ref|ZP_07790986.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516] gi|29342844|gb|AAO80608.1| conserved hypothetical protein [Enterococcus faecalis V583] gi|227074787|gb|EEI12750.1| rRNA methylase [Enterococcus faecalis TX0104] gi|227175966|gb|EEI56938.1| rRNA methylase [Enterococcus faecalis HH22] gi|256950418|gb|EEU67050.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96] gi|291077508|gb|EFE14872.1| putative rRNA methylase [Enterococcus faecalis R712] gi|291082293|gb|EFE19256.1| putative rRNA methylase [Enterococcus faecalis S613] gi|300850572|gb|EFK78321.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11] gi|310626845|gb|EFQ10128.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512] gi|311287945|gb|EFQ66501.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516] gi|315145295|gb|EFT89311.1| rRNA methylase family protein [Enterococcus faecalis TX2141] gi|315151636|gb|EFT95652.1| rRNA methylase family protein [Enterococcus faecalis TX0012] gi|315161913|gb|EFU05930.1| rRNA methylase family protein [Enterococcus faecalis TX0645] gi|315174703|gb|EFU18720.1| rRNA methylase family protein [Enterococcus faecalis TX1346] gi|315573416|gb|EFU85607.1| rRNA methylase family protein [Enterococcus faecalis TX0309B] gi|315581334|gb|EFU93525.1| rRNA methylase family protein [Enterococcus faecalis TX0309A] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM 78 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKL 64 >gi|270291587|ref|ZP_06197807.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4] gi|270279906|gb|EFA25744.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +V+ PG ++DAT G G+ F V + D A+S + + Sbjct: 12 LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGRVFSFDIQTAALSATEARLE 65 Query: 80 DY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L Q + QL Y D + G VF+LG Sbjct: 66 KQLPDHQHVQLIQDSHDQLTQY-VDTPISGAVFNLGY 101 >gi|323488395|ref|ZP_08093642.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2] gi|323397902|gb|EGA90701.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMR 79 LLE+ + G V++D T G G+ F V A D A+ +E ++ Sbjct: 13 LLEQAVT-----SGDVVIDGTAGN-GHDTHFLASLTGANGKVFAFDIQAEAIHATRERVQ 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ + L + ++++DYV + + VF+LG Sbjct: 67 EF-DHIELIHDSHAKIKDYVTE-PIAAAVFNLGY 98 >gi|153939332|ref|YP_001389723.1| hypothetical protein CLI_0427 [Clostridium botulinum F str. Langeland] gi|170757483|ref|YP_001780008.1| hypothetical protein CLD_0396 [Clostridium botulinum B1 str. Okra] gi|152935228|gb|ABS40726.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|169122695|gb|ACA46531.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 188 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G +++D T G G+ VI+ D A++ +E +R++ + Sbjct: 24 GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + D + V +F+LG Sbjct: 83 HENLDRHIQEKVKLFIFNLGY 103 >gi|288905978|ref|YP_003431200.1| rRNA methylase [Streptococcus gallolyticus UCN34] gi|288732704|emb|CBI14278.1| Putative rRNA methylase [Streptococcus gallolyticus UCN34] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ A +DAT G G + +F + V A D A+ +E + + Sbjct: 13 LAEVLDEQAIA-----VDATMGNGNDT-AFLAQHTKEVYAFDVQEQALQSTKERLEKQEI 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q D+ ++ + +F+LG Sbjct: 67 HNAHLILDGHQHIDHYVNQPIRAAIFNLGY 96 >gi|212638269|ref|YP_002314789.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1] gi|212559749|gb|ACJ32804.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1] Length = 191 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ--- 84 L G +++DAT G G+ + + +V D A+ + + ++ + Sbjct: 17 LAVKEGDIVVDATIGN-GHDTLYLAERVGQSGHVFGFDIQAQAIENTTKRLHEHHMETRV 75 Query: 85 --FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 A + G +F+LG Sbjct: 76 TLVQASHAEIDAHIPPEYKGRITGAMFNLGY 106 >gi|167759369|ref|ZP_02431496.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704] gi|167662926|gb|EDS07056.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 8/157 (5%) Query: 37 GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE--QFSLFQAT 91 G +DAT G G + C + V+A D A+ Q +++ + SL + Sbjct: 21 GGFYIDATMGNGKDTLMLCTLAGKAGSVLAFDIQDTALQATQRLLKEQGCLERASLIKDG 80 Query: 92 FSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 + Y + D + F+ G S I L + +S Sbjct: 81 HEHMDLYAGEGTADVICFNFGYLPGGSHHIATRATTSVEAIQKGLKILKKGGMMSLCIYS 140 Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + E A + A Sbjct: 141 GGDTGFEEKERILDYLRELPAREYTVIVNAYYNRANN 177 >gi|306831998|ref|ZP_07465153.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834120|ref|ZP_07467240.1| rRNA methylase [Streptococcus bovis ATCC 700338] gi|325978945|ref|YP_004288661.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304423693|gb|EFM26839.1| rRNA methylase [Streptococcus bovis ATCC 700338] gi|304425924|gb|EFM29041.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178873|emb|CBZ48917.1| rRNA methylase (SAM-dependent methyltransferase superfamily) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 187 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ A +DAT G G + +F + V A D A+ +E + + Sbjct: 13 LAEVLDEQAIA-----VDATMGNGNDT-AFLAQHAKEVYAFDVQEQALQSTKERLEKQEI 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q D+ ++ + +F+LG Sbjct: 67 HNAHLILDGHQHIDHYVNQPIRAAIFNLGY 96 >gi|295317811|gb|ADF98188.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 188 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G +++D T G G+ VI+ D A++ +E +R++ + Sbjct: 24 GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + D + V +F+LG Sbjct: 83 HENLDRHIQEKVKLFIFNLGY 103 >gi|304384539|ref|ZP_07366885.1| rRNA methylase [Pediococcus acidilactici DSM 20284] gi|304328733|gb|EFL95953.1| rRNA methylase [Pediococcus acidilactici DSM 20284] Length = 187 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +V+ PG ++DAT G G+ F V + D A+S + + Sbjct: 12 LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGQVFSFDIQAAALSATEARLE 65 Query: 80 DY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L Q + QL Y D + G VF+LG Sbjct: 66 KQLPDHQHVQLIQDSHDQLTQY-VDTPISGAVFNLGY 101 >gi|239828101|ref|YP_002950725.1| rRNA methylase [Geobacillus sp. WCH70] gi|239808394|gb|ACS25459.1| putative rRNA methylase [Geobacillus sp. WCH70] Length = 191 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQF 85 L G +++DAT G G+ + + +V D A++ ++++ + Sbjct: 16 LAVNEGDIVVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAIAKTSARLQEHNMLNRV 74 Query: 86 SLFQATFSQLQDYVPDKG---VDGVVFDLGV 113 +LFQA+ QL + +P + G +F+LG Sbjct: 75 TLFQASHDQLIEKIPSIYHGRITGAMFNLGY 105 >gi|319892816|ref|YP_004149691.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus pseudintermedius HKU10-03] gi|317162512|gb|ADV06055.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus pseudintermedius HKU10-03] gi|323464152|gb|ADX76305.1| rRNA methylase, putative [Staphylococcus pseudintermedius ED99] Length = 187 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFS 93 V++DAT G G+ F +V D A+ ++ + DY F + Sbjct: 23 VVIDATCGN-GHDTKFLADLVPHGHVYGCDIQQEAIENTKQRVHDYNNVSLFHTGHEWIT 81 Query: 94 QLQDYVPDKGVDGVVFDLGV 113 Q V +F+LG Sbjct: 82 QYIRDEHLTQVHAAIFNLGY 101 >gi|224476851|ref|YP_002634457.1| hypothetical protein Sca_1368 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421458|emb|CAL28272.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 185 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 ++DAT G G+ F V D A+ Q +RD L Sbjct: 18 INESSTVIDATCGN-GHDTLFLAEHVPNGKVYGFDIQEEAIKAAQLKVRDLNNTI-LIHD 75 Query: 91 TFSQLQDYV--PDKGVDGVVFDLGV 113 ++ Y+ D VD +F+LG Sbjct: 76 GHENIEQYIESNDYPVDAAIFNLGY 100 >gi|83310707|ref|YP_420971.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1] gi|82945548|dbj|BAE50412.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1] Length = 177 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 A L P G +LD G G ++R F G NV ALDRD Q + + E Sbjct: 18 AALVP-EGGTVLDLACGGGRHARLFLDRGHNVTALDRD-----IAQARLAEGAE 65 >gi|323702788|ref|ZP_08114448.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574] gi|323532305|gb|EGB22184.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574] Length = 192 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 9/88 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK---EQF 85 G +D T G G+ V A D A++ +E + E+ Sbjct: 18 KLQAGDTAVDGTMGN-GHDTLILAQLVGPTGKVWAFDIQAQALANTRERLATAGVLDERI 76 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L Q ++ Y + +++LG Sbjct: 77 ELIQDGHEYIKKY-VSHPIQAAIYNLGY 103 >gi|187777042|ref|ZP_02993515.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC 15579] gi|187773970|gb|EDU37772.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC 15579] Length = 188 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQAT 91 G + +D T G G+ VI+ D A+ +E ++D +L Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNEGKVISFDIQKEAIDKTKEKLKDIDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L Y+ + V +F+LG Sbjct: 83 HENLDRYIQE-KVKLFIFNLGY 103 >gi|220932037|ref|YP_002508945.1| putative rRNA methylase [Halothermothrix orenii H 168] gi|219993347|gb|ACL69950.1| putative rRNA methylase [Halothermothrix orenii H 168] Length = 196 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ F V + D A+ + +++ E+ L Sbjct: 26 VKKGSTVIDATAGN-GHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEERVYL 84 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 L +Y+ + +DGV+F+LG Sbjct: 85 IHDGHENLDNYIKGQFIDGVIFNLGY 110 >gi|157151080|ref|YP_001450937.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1] gi|157075874|gb|ABV10557.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 184 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + + Sbjct: 65 ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHE 135 >gi|332359111|gb|EGJ36932.1| rRNA methylase [Streptococcus sanguinis SK49] Length = 183 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAD- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + Sbjct: 65 ------------LDNAQLILAGHETMDQYTDHFKAAIFNLGYLPSADKSVITRPDTTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LKKVCQGLEKGGRAAIMIYYGHE 135 >gi|324991319|gb|EGC23252.1| rRNA methylase [Streptococcus sanguinis SK353] Length = 183 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 22/144 (15%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ F + V A D AV + + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTHQRLSEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 + L A L Y +F+LG + R + Sbjct: 66 DNVQLILAGHEILDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 + V I+ G E Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135 >gi|30684861|ref|NP_683312.2| methylase-related [Arabidopsis thaliana] gi|26983794|gb|AAN86149.1| unknown protein [Arabidopsis thaliana] gi|332191331|gb|AEE29452.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 274 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 14/94 (14%) Query: 34 PAPGKVILDATFGAGGYSRSFCK--------MGSNVIALDRDPFAVSCGQETM-----RD 80 G ++DAT G G + + K G V A+D A+ + Sbjct: 95 IQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154 Query: 81 YKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113 KE LF S++ + VP+ V V F+LG Sbjct: 155 EKECVKLFNLCHSKMGEIVPENARVRMVAFNLGY 188 >gi|291485487|dbj|BAI86562.1| hypothetical protein BSNT_04441 [Bacillus subtilis subsp. natto BEST195] Length = 194 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ----FSL 87 G +++DAT G G+ F +V A D AV+ +E + D + F Sbjct: 20 EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ V VF+LG Sbjct: 79 SHDKIAESLPPETHGKVAAAVFNLGY 104 >gi|16080101|ref|NP_390927.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310989|ref|ZP_03592836.1| hypothetical protein Bsubs1_16601 [Bacillus subtilis subsp. subtilis str. 168] gi|221315316|ref|ZP_03597121.1| hypothetical protein BsubsN3_16507 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320233|ref|ZP_03601527.1| hypothetical protein BsubsJ_16428 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324515|ref|ZP_03605809.1| hypothetical protein BsubsS_16577 [Bacillus subtilis subsp. subtilis str. SMY] gi|81815732|sp|O34614|YTQB_BACSU RecName: Full=Putative rRNA methylase ytqB gi|2293301|gb|AAC00379.1| YtqB [Bacillus subtilis] gi|2635533|emb|CAB15027.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168] Length = 194 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ----FSL 87 G +++DAT G G+ F +V A D AV+ +E + D + F Sbjct: 20 EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ V VF+LG Sbjct: 79 SHDKIAESLPPETHGKVAAAVFNLGY 104 >gi|300855525|ref|YP_003780509.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300435640|gb|ADK15407.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 188 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 + G +++DAT G G + ++ V + D A+ +E + E Sbjct: 18 IKLNKGDIVVDATMGNGNDTELLAELVGSSGKVYSFDIQETALQNTKEKLMKSNVSEWVK 77 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146 L + YV DK + + G+ + + + + ++ Sbjct: 78 LIHDGHENMDKYVKDKINLVIF-------------NLGYLPKGEHSVTTKSETTLVALKK 124 Query: 147 VVNQANVKDLTRILGILG 164 +N + ++ G Sbjct: 125 ALNLICKNGIIILVVYYG 142 >gi|322377325|ref|ZP_08051816.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M334] gi|321281525|gb|EFX58534.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M334] Length = 187 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 14 LAEVVT-----QDDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQEQALEKTQERLNQAGM 67 >gi|289167555|ref|YP_003445824.1| hypothetical protein smi_0709 [Streptococcus mitis B6] gi|288907122|emb|CBJ21956.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 167 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----QDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLNQAGM 65 >gi|228475902|ref|ZP_04060612.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus hominis SK119] gi|228270057|gb|EEK11527.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus hominis SK119] Length = 186 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + + V D A+ +E + +K + Sbjct: 18 IQHDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIASFKHVTLIHDGH 77 Query: 92 FSQLQDYVPDK--GVDGVVFDLGV 113 + L D D VD +F+LG Sbjct: 78 ENILNDIPSDVIGNVDAAIFNLGY 101 >gi|321312586|ref|YP_004204873.1| putative RNA methylase [Bacillus subtilis BSn5] gi|320018860|gb|ADV93846.1| putative RNA methylase [Bacillus subtilis BSn5] Length = 194 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ----FSL 87 G +++DAT G G+ F +V A D AV+ +E + D + F Sbjct: 20 EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFQK 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ V VF+LG Sbjct: 79 SHDKIAESLPPETHGKVAAAVFNLGY 104 >gi|293374332|ref|ZP_06620659.1| conserved hypothetical protein [Turicibacter sanguinis PC909] gi|292646995|gb|EFF64978.1| conserved hypothetical protein [Turicibacter sanguinis PC909] Length = 187 Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 14/148 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LLEK+++ G+ ++DAT G GY F V + D A+ + + Sbjct: 15 LLEKIVSA-----GETVIDATAGN-GYDTLFLAKLVGESGKVFSFDVQQEAIDSTKAKLE 68 Query: 80 DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV--SSMQIDCGDRGFSFQKSGPLDMR 136 + K E SL + +YV + + +F+LG S Q +++ + Sbjct: 69 EAKLENVSLILDGHQHVLNYVTE-EISAAIFNLGYLPGSDQSITTTGETTWKAVTDMLSL 127 Query: 137 MSCSGISASDVVNQANVKDLTRILGILG 164 + +G+ + + + R Sbjct: 128 LKKNGLIILVIYHGHEEGKVERHFLEDC 155 >gi|315641876|ref|ZP_07896868.1| rRNA methylase [Enterococcus italicus DSM 15952] gi|315482444|gb|EFU72984.1| rRNA methylase [Enterococcus italicus DSM 15952] Length = 187 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78 L +++I G ++DAT G G+ +F +V A D A+ ++ + Sbjct: 12 LAKEII-----LSGDCVVDATMGN-GHDTAFLAQLVGPTGHVFAFDVQKPALIATEQRLL 65 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV 113 D ++ +L Q Y P + + +F+LG Sbjct: 66 AADLLDRTTLIHDGHEQFTQYFPKQTALKLAIFNLGY 102 >gi|255505263|ref|ZP_05345115.3| putative rRNA methylase [Bryantella formatexigens DSM 14469] gi|255269025|gb|EET62230.1| putative rRNA methylase [Bryantella formatexigens DSM 14469] Length = 221 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD--YKEQFSLF 88 G + +DAT G G ++ C +V+A D P A+ +E + + L Sbjct: 52 IHEGSLCIDATMGNGNDTQFLCTQAGRNGSVLAFDIQPAALEHTKERLAHALPYCNYQLI 111 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + +L Y + D + F+LG Sbjct: 112 LDSHERLDAYAAPESADCIAFNLGY 136 >gi|313887999|ref|ZP_07821677.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845954|gb|EFR33337.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 184 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 23/136 (16%) Query: 37 GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQ--FSLFQAT 91 GK+ +DAT G G + K V D A+S + + Y F A Sbjct: 21 GKIAVDATVGKGNDTLKLLKAVGKDGFVYGFDVQEEALSKARVLLAGYDNYEFFLDSHAN 80 Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151 +L+ S + + GF + + S + Sbjct: 81 IDRLE------------------SFDLVIYNLGFLPGSDKKITTLRESTLESLRKATEKI 122 Query: 152 NVKDLTRILGILGEEK 167 N L ++ LG E Sbjct: 123 NEAGLIILVSYLGHEN 138 >gi|164688312|ref|ZP_02212340.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM 16795] gi|164602725|gb|EDQ96190.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM 16795] Length = 190 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS-CGQETMRDYKEQFSLFQ 89 G V++DAT G G + K V A D A+ ++ ++ L Sbjct: 22 IQEGDVVVDATMGNGYDTVYLAKKVGENGKVYAFDVQEEALKSTTKKVNKEELNNVELIL 81 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + YV + V +VF+LG Sbjct: 82 DGHQNMDKYVKE-EVSCIVFNLGY 104 >gi|154687178|ref|YP_001422339.1| YtqB [Bacillus amyloliquefaciens FZB42] gi|154353029|gb|ABS75108.1| YtqB [Bacillus amyloliquefaciens FZB42] Length = 193 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQ 89 G + +DAT G G+ F +V A D A++ +E + D+ + +L Sbjct: 19 QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGADFSPRVTLHH 77 Query: 90 ATFSQLQDYVPDK---GVDGVVFDLGV 113 + Q++ +P+ V VF+LG Sbjct: 78 KSHDQIKASLPEDAHGRVACAVFNLGY 104 >gi|78224015|ref|YP_385762.1| putative rRNA methylase [Geobacter metallireducens GS-15] gi|78195270|gb|ABB33037.1| putative rRNA methylase [Geobacter metallireducens GS-15] Length = 1128 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFSLF 88 PG +DAT G G+ F V A D A++ +E + + +++ +L Sbjct: 959 RPGDRAVDATCGN-GHDTLFLAQLVGPQGRVWAFDVQAKALAATEERLAEAGCRDRVALV 1017 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 +L + V V VVF+LG Sbjct: 1018 HGGHERLAEVVT-GPVRAVVFNLGF 1041 >gi|311031210|ref|ZP_07709300.1| putative rRNA methylase [Bacillus sp. m3-13] Length = 190 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK----- 82 L G + +D T G G+ F +V D A+S + + ++ Sbjct: 16 LALTEGDIAVDCTVGN-GHDTLFLSELVGENGHVFGFDIQAEALSNTKTLLAEHGVESRV 74 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F A + + G +F+LG Sbjct: 75 TLFEDSHAKVLERIPSEKHHLIRGAIFNLGY 105 >gi|306824940|ref|ZP_07458283.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432767|gb|EFM35740.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 185 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKRVYAFDIQEQALEKTQERLDQAGM 65 >gi|168184845|ref|ZP_02619509.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237793675|ref|YP_002861227.1| hypothetical protein CLJ_B0411 [Clostridium botulinum Ba4 str. 657] gi|182672096|gb|EDT84057.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229263450|gb|ACQ54483.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 188 Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 29/188 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G + +D T G G+ VI+ D A++ +E +R + + Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLRKFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 + D + V +F+LG K + + + + + + Sbjct: 83 HENLDRHIQEKVKLFIFNLGY------------LPGKDHNITTKAETTLKALKKALKLLD 130 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + ++ G E + + S L QK KN+ I+ A Sbjct: 131 DNGIVLLVIYYGHENG------------KEEKAALEKFTSKLDQKVYNVMKNSFINQANN 178 Query: 213 SFQALRIF 220 + I Sbjct: 179 PPLLICIE 186 >gi|325263526|ref|ZP_08130260.1| putative rRNA methylase [Clostridium sp. D5] gi|324031235|gb|EGB92516.1| putative rRNA methylase [Clostridium sp. D5] Length = 188 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD--YKEQFSLF 88 PG V +DAT G G + C++ V A D A++ E + + + L Sbjct: 19 IEPGDVCVDATAGNGNDTEFLCRLAGSTGKVYAFDIQQEALAHTAERIEKLGFGSRARLI 78 Query: 89 QATFSQLQDYVPDKGVDGVV 108 Q ++ +YV + V Sbjct: 79 QDGHEKMGEYVKEDVSAIVF 98 >gi|225181671|ref|ZP_03735111.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1] gi|225167652|gb|EEG76463.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1] Length = 184 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%) Query: 37 GKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA 90 G V +DAT G G+ F G V+A D AV +E + + ++ L+ Sbjct: 19 GGVAVDATCGN-GHDTLFLAQQVGPGGTVLAFDIQQQAVDATKERLAEAALLDRVQLYTD 77 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + + L DYV G+D ++F+LG Sbjct: 78 SHANLDDYVQS-GIDAMMFNLGY 99 >gi|322375523|ref|ZP_08050036.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. C300] gi|321279786|gb|EFX56826.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. C300] Length = 187 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 14 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 67 >gi|315613451|ref|ZP_07888359.1| rRNA methylase [Streptococcus sanguinis ATCC 49296] gi|315314447|gb|EFU62491.1| rRNA methylase [Streptococcus sanguinis ATCC 49296] Length = 185 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65 >gi|306829787|ref|ZP_07462976.1| rRNA methylase [Streptococcus mitis ATCC 6249] gi|304428138|gb|EFM31229.1| rRNA methylase [Streptococcus mitis ATCC 6249] Length = 185 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65 >gi|148378358|ref|YP_001252899.1| hypothetical protein CBO0355 [Clostridium botulinum A str. ATCC 3502] gi|153931757|ref|YP_001382757.1| hypothetical protein CLB_0398 [Clostridium botulinum A str. ATCC 19397] gi|153936917|ref|YP_001386308.1| hypothetical protein CLC_0413 [Clostridium botulinum A str. Hall] gi|226947586|ref|YP_002802677.1| hypothetical protein CLM_0423 [Clostridium botulinum A2 str. Kyoto] gi|148287842|emb|CAL81908.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927801|gb|ABS33301.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152932831|gb|ABS38330.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|226842840|gb|ACO85506.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 188 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 29/188 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G + +D T G G+ VI+ D A++ +E +R++ + Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 + D + V +F+LG K + + + + + + Sbjct: 83 HENLDKHIQEKVKLFIFNLGY------------LPGKDHNITTKAETTLKALKKALKLLD 130 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + ++ G E + + S L QK KN+ I+ A Sbjct: 131 DNGIVLLVIYYGHENG------------KEEKAALEKFTSELDQKVYNVMKNSFINQANN 178 Query: 213 SFQALRIF 220 + I Sbjct: 179 PPLLICIE 186 >gi|270292446|ref|ZP_06198657.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M143] gi|270278425|gb|EFA24271.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M143] Length = 185 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----QDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERL 60 >gi|322385960|ref|ZP_08059600.1| rRNA methylase [Streptococcus cristatus ATCC 51100] gi|321269943|gb|EFX52863.1| rRNA methylase [Streptococcus cristatus ATCC 51100] Length = 182 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ V++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + + Sbjct: 65 ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHE 135 >gi|291522365|emb|CBK80658.1| Putative rRNA methylase [Coprococcus catus GD/7] Length = 195 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 33 NPAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETM--RDYKEQFS 86 PG + D T G G+ + C++ + V + D P A+S + + Sbjct: 20 QIRPGDTVCDCTMGN-GHDTAYMCRLTGDTGTVYSFDIQPEALSRTEALLTEEHLLTPAR 78 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + S L+ Y D + VF+LG Sbjct: 79 LILDSHSHLKQY-IDHPIRFFVFNLGY 104 >gi|170758569|ref|YP_001785692.1| hypothetical protein CLK_3543 [Clostridium botulinum A3 str. Loch Maree] gi|169405558|gb|ACA53969.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 188 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G + +D T G G+ VI+ D A++ +E +R++ + Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + D + V +F+LG Sbjct: 83 HENLDRHIQEKVKLFIFNLGY 103 >gi|282882011|ref|ZP_06290652.1| rRNA methylase [Peptoniphilus lacrimalis 315-B] gi|281298041|gb|EFA90496.1| rRNA methylase [Peptoniphilus lacrimalis 315-B] Length = 181 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 7/89 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY 81 +++++ N GK +DAT G G + K V A D A++ +E ++ Sbjct: 11 VDEILK--NDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQAINYCKEKFKNI 68 Query: 82 KE--QFSLFQATFSQLQDYVPDKGVDGVV 108 + L+++ G + Sbjct: 69 NNLEILKISHEFIDILENFDLAIYNLGYL 97 >gi|222152593|ref|YP_002561768.1| rRNA methylase [Streptococcus uberis 0140J] gi|222113404|emb|CAR41065.1| putative rRNA methylase [Streptococcus uberis 0140J] Length = 181 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ 94 + +DAT G G + F + V A D A+S Q+ + E L Sbjct: 18 KDSIFVDATVGNGNDTLYFAPLVKKVYAFDIQKEAISRTQQKLEANGIENVILIHDGHEN 77 Query: 95 LQDYVPDKGVDGVVFDLGV 113 + YV D +D +F+LG Sbjct: 78 VNHYVQD--IDAAIFNLGY 94 >gi|160947166|ref|ZP_02094333.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270] gi|158446300|gb|EDP23295.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270] Length = 183 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 39 VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQ 94 + +D T G G S++ ++ + D A+ ++ ++ Y F + Sbjct: 24 IAVDMTVGNGFDSKNILEILKPEKLYCFDIQQEALDNSKKLLKQYSNFELILENHKNFDK 83 Query: 95 LQDYVPDKGVDGVVF 109 D + + + Sbjct: 84 FVKENIDFAMYNLGY 98 >gi|325841279|ref|ZP_08167380.1| putative rRNA methylase [Turicibacter sp. HGF1] gi|325489960|gb|EGC92307.1| putative rRNA methylase [Turicibacter sp. HGF1] Length = 187 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 14/148 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LLEK+++ G+ ++DAT G GY F V + D A+ + + Sbjct: 15 LLEKIVS-----SGETVIDATAGN-GYDTLFLAKLVGESGKVFSFDVQQEAIDSTKAKLE 68 Query: 80 DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV--SSMQIDCGDRGFSFQKSGPLDMR 136 + K E SL + +YV + + +F+LG S Q +++ + Sbjct: 69 EAKLENVSLILDGHQHVLNYVTE-EISAAIFNLGYLPGSDQSITTTGETTWKAVTDMLSL 127 Query: 137 MSCSGISASDVVNQANVKDLTRILGILG 164 + +G+ + + + R Sbjct: 128 LKKNGLIILVIYHGHEEGKVERHFLEDC 155 >gi|326331617|ref|ZP_08197905.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1] gi|325950416|gb|EGD42468.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1] Length = 255 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 30 ALLNPAPGKVILDATFGAGG--YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 L G+ +LD GAGG ++ + G++VIA D+D ++ E +++ Sbjct: 7 DRLGLKAGERVLD--MGAGGGRHAFEMYRRGADVIAFDQDAEELAKVSEWFFAMRDEV 62 >gi|322804628|emb|CBZ02180.1| sam-dependent methyltransferase, MraW methylase family [Clostridium botulinum H04402 065] Length = 188 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 29/188 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G + +D T G G+ VI+ D A++ +E +R++ + Sbjct: 24 GDIAVDCTLGK-GHDTVLLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 + D + V +F+LG K + + + + + + Sbjct: 83 HEKLDKHIQEKVKLFIFNLGY------------LPGKDHNVTTKAETTLKALKKALKLLD 130 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + ++ G E + + S L QK KN+ I+ A Sbjct: 131 DNGIVLLVIYYGHENG------------KEEKAALEKFTSELDQKVYNVMKNSFINQANN 178 Query: 213 SFQALRIF 220 + I Sbjct: 179 PPLLICIE 186 >gi|168177698|ref|ZP_02612362.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182671192|gb|EDT83166.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] Length = 188 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 G + +D T G G+ VI+ D A++ +E +R++ + Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + D + V +F+LG Sbjct: 83 HENLDRHIQEKVKLFIFNLGY 103 >gi|294501591|ref|YP_003565291.1| putative rRNA methylase [Bacillus megaterium QM B1551] gi|295706939|ref|YP_003600014.1| putative rRNA methylase [Bacillus megaterium DSM 319] gi|294351528|gb|ADE71857.1| putative rRNA methylase [Bacillus megaterium QM B1551] gi|294804598|gb|ADF41664.1| putative rRNA methylase [Bacillus megaterium DSM 319] Length = 189 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY--KEQFS 86 A G V +DAT G G+ F +V D P A+ Q+ + ++ + + + Sbjct: 17 AVAQGDVAIDATAGN-GHDTLFLANLVGDTGHVYGFDIQPQAIQATQQRLTEHHVENRVT 75 Query: 87 LFQATFSQLQDYVP--DKGVDGVVFDLGV 113 L Q + S + V G VF+LG Sbjct: 76 LIQESHSNINMLPRSIKGRVTGAVFNLGY 104 >gi|315223317|ref|ZP_07865178.1| rRNA methylase family protein [Streptococcus anginosus F0211] gi|315187749|gb|EFU21503.1| rRNA methylase family protein [Streptococcus anginosus F0211] Length = 182 Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 +++DAT G G+ F + V A D A+ + + + K + LF Sbjct: 16 ITKEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAIEQTTKRLAEAKLDNVELFLTG 74 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 + YV + +F+LG Sbjct: 75 HENVDQYVES--IKAAIFNLGY 94 >gi|168487256|ref|ZP_02711764.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1087-00] gi|183569859|gb|EDT90387.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1087-00] Length = 185 Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQKQALEKTQERLHQAG 64 >gi|242281044|ref|YP_002993173.1| rRNA methylase [Desulfovibrio salexigens DSM 2638] gi|242123938|gb|ACS81634.1| putative rRNA methylase [Desulfovibrio salexigens DSM 2638] Length = 190 Score = 44.7 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 17/163 (10%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQET 77 VL +V+ PG + +DAT G G + + +V D AV+ ++ Sbjct: 11 KSVLC-EVLH-----PGCIGVDATVGNGYDTVFLSEKAGPDGHVFGFDIQEDAVNQTEQR 64 Query: 78 M--RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV--SSMQIDCGDRGFSFQKS 130 + +++F + + + +P + V+ V+F+LG S + + Sbjct: 65 LNEECLPANWTIFHSGHENMLELIPSEFHGRVNAVMFNLGFLPGSDKTVITKSKTTLAAI 124 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRI-LGILGEEKQASRI 172 ++ G+ + D + + Sbjct: 125 EASLDLLAKGGMLCIAIYAGHPGGDDEDVAVREYCNALDYHTY 167 >gi|222056740|ref|YP_002539102.1| rRNA methylase [Geobacter sp. FRC-32] gi|221566029|gb|ACM22001.1| putative rRNA methylase [Geobacter sp. FRC-32] Length = 228 Score = 44.7 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKE--QFSL 87 PG ++DAT G G+ F + V A D A+ + + + K + L Sbjct: 60 VKPGDRVVDATCGN-GHDTLFLAGLVEAEGAVFAFDVQEQALEKTRLLLEENKCLDRVQL 118 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 F A +L YVPD V V F+LG Sbjct: 119 FHAGHQELAAYVPD-PVQAVAFNLGY 143 >gi|39995796|ref|NP_951747.1| hypothetical protein GSU0690 [Geobacter sulfurreducens PCA] gi|39982560|gb|AAR34020.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298504804|gb|ADI83527.1| rRNA methyltransferase, putative [Geobacter sulfurreducens KN400] Length = 189 Score = 44.7 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFSL 87 PG ++DAT G G+ F V A D A++ + + E+ L Sbjct: 20 VKPGDRVVDATCGN-GHDTLFLAELVGPEGRVWAFDIQDAALAATAKRLEAAGCGERVEL 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 +L + VP V VVF+LG Sbjct: 79 VNGGHERLAELVP-GPVTAVVFNLGF 103 >gi|302786828|ref|XP_002975185.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii] gi|300157344|gb|EFJ23970.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii] Length = 184 Score = 44.7 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 11/91 (12%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSCGQETMRDY-----K 82 PG ++D T G G + ++ V D A+ + + + Sbjct: 10 VRPGDTVVDTTCGNGIDTLLLARLVSPGSLLGRVYGFDIQKEALERTSLLLEQHLTPEQR 69 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + LFQ S++ + + D VV++LG Sbjct: 70 NRVELFQDCHSKMGEVLKDVRARLVVYNLGY 100 >gi|327470441|gb|EGF15897.1| rRNA methylase [Streptococcus sanguinis SK330] Length = 183 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + + Sbjct: 65 ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHE 135 >gi|325687100|gb|EGD29123.1| rRNA methylase [Streptococcus sanguinis SK72] Length = 183 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + + Sbjct: 65 ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHE 135 >gi|225867956|ref|YP_002743904.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus] gi|225701232|emb|CAW98182.1| putative rRNA methylase [Streptococcus equi subsp. zooepidemicus] Length = 185 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L++V+ + +DAT G GY +F S V A D A++ QE + Sbjct: 13 LKEVLD-----KQSIAVDATMGN-GYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGL 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + + +F+LG Sbjct: 67 TNAELILAGHEQVDQYVKEPIRAAIFNLGY 96 >gi|225871129|ref|YP_002747076.1| rRNA methylase [Streptococcus equi subsp. equi 4047] gi|225700533|emb|CAW95003.1| putative rRNA methylase [Streptococcus equi subsp. equi 4047] Length = 185 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L++V+ + +DAT G GY +F S V A D A++ QE + Sbjct: 13 LKEVLD-----KQSIAVDATMGN-GYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGL 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + + +F+LG Sbjct: 67 TNAELILAGHEQVDQYVKEPIRAAIFNLGY 96 >gi|195978727|ref|YP_002123971.1| SAM-dependent methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975432|gb|ACG62958.1| SAM-dependent methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 185 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L++V+ + +DAT G GY +F S V A D A++ QE + Sbjct: 13 LKEVLD-----KQSIAVDATMGN-GYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGL 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + + +F+LG Sbjct: 67 TNAELILAGHEQVDQYVKEPIRAAIFNLGY 96 >gi|332358319|gb|EGJ36145.1| rRNA methylase [Streptococcus sanguinis SK355] Length = 183 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ ++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDTVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + + G+ + R + + Sbjct: 65 ------------LDNAQLILAGHETLDQYLDHFKAAIFNLGYLPSADKSVITRPDTTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LEKVCLGLEKGGRAAIMIYYGHE 135 >gi|332367422|gb|EGJ45155.1| rRNA methylase [Streptococcus sanguinis SK1059] Length = 183 Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 22/144 (15%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ ++DAT G G+ F + V A D AV + + + Sbjct: 12 LAEVVT-----KEDTVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTCQRLAEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 + L A L Y +F+LG + R + Sbjct: 66 DNVQLILAGHETLDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 + V I+ G E Sbjct: 112 ALEKVCRGLEKGGRAAIMIYYGHE 135 >gi|116873097|ref|YP_849878.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741975|emb|CAK21099.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 191 Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ + +V+ D A++ + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLADLVGINGHVLGFDIQQQAINATKTRLENAGVTPQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + Y V +F+LG Sbjct: 77 VCASHAFIPKYATK-PVRAAIFNLGY 101 >gi|328946868|gb|EGG41005.1| rRNA methylase [Streptococcus sanguinis SK1087] Length = 183 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D AV ++ + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAKAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + + Sbjct: 65 ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPATTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V I+ G E Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHE 135 >gi|225858482|ref|YP_002739992.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585] gi|225721149|gb|ACO17003.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585] Length = 185 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 64 >gi|149010726|ref|ZP_01832097.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75] gi|147765207|gb|EDK72136.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75] Length = 185 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 64 >gi|148985234|ref|ZP_01818457.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71] gi|148992239|ref|ZP_01821962.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68] gi|148997267|ref|ZP_01824921.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70] gi|149002339|ref|ZP_01827281.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69] gi|149020266|ref|ZP_01835158.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72] gi|168482881|ref|ZP_02707833.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1873-00] gi|168488333|ref|ZP_02712532.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195] gi|168492272|ref|ZP_02716415.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC0288-04] gi|168492810|ref|ZP_02716953.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|168575323|ref|ZP_02721259.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016] gi|221231470|ref|YP_002510622.1| rRNA methylase [Streptococcus pneumoniae ATCC 700669] gi|225854180|ref|YP_002735692.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA] gi|225860645|ref|YP_002742154.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Taiwan19F-14] gi|237650321|ref|ZP_04524573.1| hypothetical protein SpneC1_06279 [Streptococcus pneumoniae CCRI 1974] gi|237821694|ref|ZP_04597539.1| hypothetical protein SpneC19_05192 [Streptococcus pneumoniae CCRI 1974M2] gi|298230021|ref|ZP_06963702.1| hypothetical protein SpneCMD_05066 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254125|ref|ZP_06977711.1| hypothetical protein SpneCM_00732 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502448|ref|YP_003724388.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A] gi|303254765|ref|ZP_07340866.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae BS455] gi|303259926|ref|ZP_07345900.1| hypothetical protein CGSSp9vBS293_03943 [Streptococcus pneumoniae SP-BS293] gi|303261331|ref|ZP_07347279.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae SP14-BS292] gi|303263997|ref|ZP_07349918.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae BS397] gi|303266311|ref|ZP_07352201.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae BS457] gi|303269776|ref|ZP_07355526.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae BS458] gi|307067272|ref|YP_003876238.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|147756967|gb|EDK64007.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70] gi|147759654|gb|EDK66645.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69] gi|147922432|gb|EDK73551.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71] gi|147928865|gb|EDK79877.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68] gi|147930568|gb|EDK81550.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72] gi|172043844|gb|EDT51890.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1873-00] gi|183572979|gb|EDT93507.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195] gi|183573546|gb|EDT94074.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC0288-04] gi|183577040|gb|EDT97568.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|183578412|gb|EDT98940.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016] gi|220673930|emb|CAR68439.1| putative rRNA methylase [Streptococcus pneumoniae ATCC 700669] gi|225723979|gb|ACO19832.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA] gi|225727226|gb|ACO23077.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Taiwan19F-14] gi|298238043|gb|ADI69174.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A] gi|301799692|emb|CBW32257.1| putative rRNA methylase [Streptococcus pneumoniae OXC141] gi|301801517|emb|CBW34209.1| putative rRNA methylase [Streptococcus pneumoniae INV200] gi|302598305|gb|EFL65350.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae BS455] gi|302637465|gb|EFL67952.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae SP14-BS292] gi|302638845|gb|EFL69306.1| hypothetical protein CGSSpBS293_03943 [Streptococcus pneumoniae SP-BS293] gi|302640698|gb|EFL71095.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae BS458] gi|302644122|gb|EFL74379.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae BS457] gi|302646402|gb|EFL76628.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae BS397] gi|306408809|gb|ADM84236.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|327390384|gb|EGE88725.1| rRNA methylase [Streptococcus pneumoniae GA04375] gi|332075948|gb|EGI86414.1| rRNA methylase [Streptococcus pneumoniae GA41301] Length = 185 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 64 >gi|15902615|ref|NP_358165.1| hypothetical protein spr0571 [Streptococcus pneumoniae R6] gi|116516252|ref|YP_816066.1| hypothetical protein SPD_0567 [Streptococcus pneumoniae D39] gi|182683579|ref|YP_001835326.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14] gi|15458150|gb|AAK99375.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076828|gb|ABJ54548.1| rRNA methylase, putative [Streptococcus pneumoniae D39] gi|182628913|gb|ACB89861.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14] Length = 187 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 14 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAG 66 >gi|149005767|ref|ZP_01829506.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae SP18-BS74] gi|169834297|ref|YP_001694128.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|307126848|ref|YP_003878879.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B] gi|147762707|gb|EDK69667.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae SP18-BS74] gi|168996799|gb|ACA37411.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|301793835|emb|CBW36228.1| putative rRNA methylase [Streptococcus pneumoniae INV104] gi|306483910|gb|ADM90779.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B] gi|332077081|gb|EGI87543.1| rRNA methylase (SAM-dependent methyltransferase superfamily) [Streptococcus pneumoniae GA17545] gi|332204671|gb|EGJ18736.1| rRNA methylase (SAM-dependent methyltransferase superfamily) [Streptococcus pneumoniae GA47901] Length = 185 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAD 64 >gi|15900553|ref|NP_345157.1| hypothetical protein SP_0652 [Streptococcus pneumoniae TIGR4] gi|111657722|ref|ZP_01408447.1| hypothetical protein SpneT_02001094 [Streptococcus pneumoniae TIGR4] gi|14972124|gb|AAK74797.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 185 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAD 64 >gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66] gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66] Length = 183 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 25/145 (17%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDY 81 V+ ++ ++DAT G G+ F + V A D AV ++ + + Sbjct: 15 VMTKE----------DTVVDATMGN-GHDTLFLAQLARKVYAFDIQEQAVEKTRQRLAEA 63 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141 D D + + + G+ + R + + Sbjct: 64 G-------------LDNAQLILAGHETLDQYLDHFKAAIFNLGYLPSADKSVITRPATTL 110 Query: 142 ISASDVVNQANVKDLTRILGILGEE 166 + V I+ G E Sbjct: 111 EALEKVCQGLEKGGRAAIMIYYGHE 135 >gi|194398444|ref|YP_002037310.1| hypothetical protein SPG_0595 [Streptococcus pneumoniae G54] gi|194358111|gb|ACF56559.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 185 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAG 64 >gi|148989023|ref|ZP_01820423.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73] gi|147925520|gb|EDK76597.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73] Length = 185 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ V++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAG 64 >gi|327462037|gb|EGF08366.1| rRNA methylase [Streptococcus sanguinis SK1057] Length = 183 Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 66 DNAQLILAGHETLDQYT--NHFKAAIFNLGY 94 >gi|322390058|ref|ZP_08063593.1| rRNA methylase [Streptococcus parasanguinis ATCC 903] gi|321143185|gb|EFX38628.1| rRNA methylase [Streptococcus parasanguinis ATCC 903] Length = 185 Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L +VI V++DAT G G+ + K+ V A D A++ QE + Sbjct: 12 LAEVIT-----KEDVVVDATMGN-GHDTVFLAKLAGQVYAFDIQEQALANTQEKLDKLGL 65 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 Q Q D + + +F+LG Sbjct: 66 QHVQLILDGHQHVDQYVE-TLKAAIFNLGY 94 >gi|296331975|ref|ZP_06874439.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675631|ref|YP_003867303.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150746|gb|EFG91631.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413875|gb|ADM38994.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 194 Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90 G +++DAT G G+ F +V A D AV+ +E + Y+ + +LF Sbjct: 20 EGDIVIDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHK 78 Query: 91 TFSQLQD 97 + ++ Sbjct: 79 SHDKIAK 85 >gi|322411186|gb|EFY02094.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 184 Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ V++DAT G G + + V A D A+ E + Sbjct: 13 LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + V +F+LG Sbjct: 68 NAELILAGHEAVDEYVTEPVRAAIFNLGY 96 >gi|314936143|ref|ZP_07843490.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80] gi|313654762|gb|EFS18507.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80] Length = 186 Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + + V D A+ +E + +K + Sbjct: 18 IQDDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIVSFKHVTLIHDGH 77 Query: 92 FSQLQDYVPDK--GVDGVVFDLGV 113 + L D D VD +F+LG Sbjct: 78 ENILNDIPSDVIGNVDAAIFNLGY 101 >gi|262283226|ref|ZP_06060993.1| methyltransferase [Streptococcus sp. 2_1_36FAA] gi|262261478|gb|EEY80177.1| methyltransferase [Streptococcus sp. 2_1_36FAA] Length = 184 Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 20/143 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG- 64 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 D D + + G+ + R + + Sbjct: 65 ------------LDNAQLILAGHETLDQYTDHFKAAIFNLGYLPSADKSVITRPDTTLEA 112 Query: 144 ASDVVNQANVKDLTRILGILGEE 166 V + I+ G E Sbjct: 113 LEKVCHGLEKCGRVAIMIYYGHE 135 >gi|293365734|ref|ZP_06612443.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|291316102|gb|EFE56546.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 185 Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQEKALEKTQERLDQAGM 65 >gi|297844572|ref|XP_002890167.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp. lyrata] gi|297336009|gb|EFH66426.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp. lyrata] Length = 274 Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 14/94 (14%) Query: 34 PAPGKVILDATFGAGGYSRSFCK--------MGSNVIALDRDPFAVSCGQETM-----RD 80 G +++DAT G G + + K G V A+D A+ + Sbjct: 95 IQKGDMVIDATCGNGNDTLAMLKMVMNDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154 Query: 81 YKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113 KE LF S++ + VP+ V V F+LG Sbjct: 155 EKECVKLFNICHSKMGEIVPENSRVRMVAFNLGY 188 >gi|319938710|ref|ZP_08013074.1| methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811760|gb|EFW08026.1| methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 182 Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82 LE+V+ +++DAT G G+ F + V A D AV + + + K Sbjct: 12 LEEVVT-----DEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAVEQTTKRLAEAK 64 >gi|289550483|ref|YP_003471387.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus lugdunensis HKU09-01] gi|315657973|ref|ZP_07910847.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289180015|gb|ADC87260.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus lugdunensis HKU09-01] gi|315497009|gb|EFU85330.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 187 Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 +++DAT G G + + +V D A+ + ++ +K Sbjct: 18 IQSDSIVIDATCGNGFDTLFLAQHVPKGHVYGFDIQQQAIDNTAKKIKSFKNVSLIHDSH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 S + +F+LG Sbjct: 78 EYISDHLISAHKNKITAAIFNLGY 101 >gi|251781840|ref|YP_002996142.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390469|dbj|BAH80928.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126654|gb|ADX23951.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 184 Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ V++DAT G G + + V A D A+ E + Sbjct: 13 LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + V +F+LG Sbjct: 68 NAELILAGHEAVDQYVTEPVRAAIFNLGY 96 >gi|299469608|emb|CBN76462.1| methylase-related [Ectocarpus siliculosus] Length = 451 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 20/116 (17%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSF-----CKMG-SNVI 62 + A H+ H LL + +A PG +LD T G G+ S K G ++ Sbjct: 260 NPAASHSHMAH---LLWRQVAG----PGDTVLDCTAGN-GHDSLELAKIVALKDGVGSLY 311 Query: 63 ALDRDPFAVSCGQETMRDYKEQF-----SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 +D A+ +E +R + +L F ++ + V VV++LG Sbjct: 312 VMDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGW 367 >gi|296133196|ref|YP_003640443.1| putative rRNA methylase [Thermincola sp. JR] gi|296031774|gb|ADG82542.1| putative rRNA methylase [Thermincola potens JR] Length = 189 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 PG ++DAT G GY F V D A+ + + E+ Sbjct: 19 KIGPGATVIDATVGN-GYDTLFLAEAVGVVGRVYGFDIQAEAIENTKLRLLKEGLLERVL 77 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 LF L V + +DG++F+LG Sbjct: 78 LFHEGHENLAHRVTE-NIDGIMFNLGY 103 >gi|56421381|ref|YP_148699.1| hypothetical protein GK2846 [Geobacillus kaustophilus HTA426] gi|56381223|dbj|BAD77131.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 195 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LL++ + G + +DAT G G+ + + +V D A++ + Sbjct: 13 LLDQAVN-----EGDIAVDATVGN-GHDTVYLAQRVGDFGHVFGFDIQSEAITAASARLA 66 Query: 80 DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + F + + + G VF+LG Sbjct: 67 KHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105 >gi|324993678|gb|EGC25597.1| rRNA methylase [Streptococcus sanguinis SK405] gi|324995009|gb|EGC26922.1| rRNA methylase [Streptococcus sanguinis SK678] gi|325696334|gb|EGD38225.1| rRNA methylase [Streptococcus sanguinis SK160] gi|327490109|gb|EGF21897.1| rRNA methylase [Streptococcus sanguinis SK1058] Length = 183 Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 22/144 (15%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ ++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDTVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLSEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 + L + L Y +F+LG + R + Sbjct: 66 DNAQLILSGHESLDQYT--DHFKAAIFNLGY------------LPSADKSVITRPDTTLE 111 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 + V I+ G E Sbjct: 112 ALKKVCQGLEKGGRAAIMIYYGHE 135 >gi|125718569|ref|YP_001035702.1| hypothetical protein SSA_1769 [Streptococcus sanguinis SK36] gi|125498486|gb|ABN45152.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 183 Score = 43.9 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64 >gi|323341734|ref|ZP_08081967.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464159|gb|EFY09352.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 174 Score = 43.9 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 +++D T G G + +V A+D A+ ++ +++ + + S+ Sbjct: 16 NKDSIVVDMTCGNGYDTHFLANHAGHVYAIDIQEEAILSSKQLNQNFSN-ITYIHSDHSR 74 Query: 95 LQDYVPDKGVDGVVFDLGV 113 + ++ G +++LG Sbjct: 75 V-NFEEKAPFTGAIYNLGY 92 >gi|329768391|ref|ZP_08259885.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341] gi|328837144|gb|EGF86785.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341] Length = 189 Score = 43.9 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQET----- 77 LL++VI +++DAT G G + K + V A D A+ Sbjct: 11 LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVYAFDIQQLAIENTTNLIKEAE 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + D E F + ++ + VVF+LG Sbjct: 66 LADKCEIILDSHFEFDK----YINEKIRAVVFNLGY 97 >gi|313637570|gb|EFS02980.1| methylase protein [Listeria seeligeri FSL S4-171] Length = 191 Score = 43.9 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG ++DAT G G+ +V+ D A++ + + Q L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 ICASHATIPEYAT-TPVRAAIFNLGY 101 >gi|289434949|ref|YP_003464821.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171193|emb|CBH27735.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 191 Score = 43.9 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG ++DAT G G+ +V+ D A++ + + Q L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 ICASHATIPEYAT-TPVRAAIFNLGY 101 >gi|295399585|ref|ZP_06809567.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|312109860|ref|YP_003988176.1| rRNA methylase [Geobacillus sp. Y4.1MC1] gi|294979051|gb|EFG54647.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|311214961|gb|ADP73565.1| rRNA methylase [Geobacillus sp. Y4.1MC1] Length = 191 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE---- 83 L G + +DAT G G+ + + +V D A+S ++++ Sbjct: 16 LAVNEGDIAVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAISATSARLQEHNMLQRV 74 Query: 84 -QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F + + G +F+LG Sbjct: 75 TLFQASHDQLIEKIPAHYHGRITGAMFNLGY 105 >gi|332799053|ref|YP_004460552.1| 50S ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1] gi|332696788|gb|AEE91245.1| Ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1] Length = 314 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 13 IHHTIGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFC-----KMGSN-VIAL 64 + G H +L + +L ++D G+G K+G+ V+A+ Sbjct: 150 MAFGTGTHETTML--CLEILEKYIKKDITVIDVGCGSG-----ILSIASGKLGAKQVLAI 202 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 DRD AV +E ++ + + +LQ+ Sbjct: 203 DRDENAVRIARENIKRNNLETCVRAVKGDKLQNINFK 239 >gi|290474987|ref|YP_003467871.1| putative methyltransferase [Xenorhabdus bovienii SS-2004] gi|289174304|emb|CBJ81096.1| putative methyltransferase [Xenorhabdus bovienii SS-2004] Length = 271 Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 VI L G+ ++D G G +S + + G NVI +D + +S + + Sbjct: 55 VINLCGLKSGQYLIDCPCGYGRHSVALREKGINVIGIDVNDEHLSIARRHAEVHNSDVIF 114 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + + + + + G S Sbjct: 115 RKDDMRTFKLERQVDVLINMFYSFGFFS 142 >gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425] gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425] Length = 254 Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQE 76 + LL+P G+ ILD G G G+ + G++V+ +D DP ++ Q+ Sbjct: 26 LQLLDPQSGEDILD--LGCGTGHLTAKIASSGASVLGIDADPAMIAAAQQ 73 >gi|149177324|ref|ZP_01855929.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM 8797] gi|148843849|gb|EDL58207.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM 8797] Length = 189 Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%) Query: 35 APGKVILDATFGAGGY-SRSFCK---MGSNVIALDRDPFAVSCG----QETMRDYKEQFS 86 PG+ +DAT G G+ +R C+ V A+D A+ QE E Sbjct: 17 QPGETAVDATAGN-GHDTRFLCELAGKSGKVFAIDIQQQALDQTAVMLQELEYHNFELIC 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 S+L + V+F+LG Sbjct: 76 GDHRLISELIPTQYQGRIGAVMFNLGY 102 >gi|294010470|ref|YP_003543930.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium japonicum UT26S] gi|292673800|dbj|BAI95318.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium japonicum UT26S] Length = 224 Score = 43.5 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDY 81 E ++A L P G+ I+D G G S + + + VI LD D A+ + Sbjct: 31 EAMLAALAPRGGETIVDIGCGTG--SFALLLKRDEPSARVIGLDPDAEALDIARRKAAAM 88 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVF 109 Q + L + D V +V Sbjct: 89 VADVDWRQGFATDLPEQSADAVVSSLVL 116 >gi|331266078|ref|YP_004325708.1| hypothetical protein SOR_0705 [Streptococcus oralis Uo5] gi|326682750|emb|CBZ00367.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 185 Score = 43.5 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ F + V A D A+ QE + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQDKALEKTQERLDQAGM 65 >gi|168335198|ref|ZP_02693303.1| possible rRNA methyltransferase [Epulopiscium sp. 'N.t. morphotype B'] Length = 185 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 A G ++DAT G G + V A D A++ + ++ Sbjct: 17 AIAAGDSVVDATCGNGNDTLFLANLVGAEGKVYAFDIQDVAIAETTRLLAEHNIDCVQVI 76 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 ++ + + +F+LG Sbjct: 77 KDGHEVAHKYMESSIAAAIFNLGY 100 >gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B] gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01] gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus] Length = 225 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 33 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 92 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 93 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 134 >gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] Length = 427 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|241889241|ref|ZP_04776544.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379] gi|241864078|gb|EER68457.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379] Length = 189 Score = 43.5 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQET----- 77 LL++VI V++DAT G G + K + V A D A+ Sbjct: 11 LLKEVID-----KNSVVVDATAGNGNDTLFLAKTSAKKVYAFDIQELAIENTTRLIEEAE 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + D E F + D + VVF+LG Sbjct: 66 LTDKCEIVLDSHFEFDK----YIDDTIRAVVFNLGY 97 >gi|162447114|ref|YP_001620246.1| methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985221|gb|ABX80870.1| methyltransferase [Acholeplasma laidlawii PG-8A] Length = 174 Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 P I+DAT G G+ F +V A D A+ + +D + + Sbjct: 18 IKPHMTIVDATCGN-GHDTLFLASRVEHVHAFDIQQEALDNTRSLTKDLDN-ITYHHTSH 75 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + + + DGV+F+LG Sbjct: 76 EHITKLISN--YDGVIFNLGY 94 >gi|332362266|gb|EGJ40066.1| rRNA methylase [Streptococcus sanguinis SK1056] Length = 183 Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDVVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLTEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y + +F+LG Sbjct: 66 DNVQLILAGHETLDQYT--EHFKAAIFNLGY 94 >gi|308174723|ref|YP_003921428.1| RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307607587|emb|CBI43958.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328554653|gb|AEB25145.1| RNA methylase [Bacillus amyloliquefaciens TA208] gi|328913062|gb|AEB64658.1| putative RNA methylase [Bacillus amyloliquefaciens LL3] Length = 193 Score = 43.5 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQ 89 G + +DAT G G+ F +V A D A++ +E + D + +L Sbjct: 19 QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGDALSPRVTLHH 77 Query: 90 ATFSQLQDYVPDK---GVDGVVFDLGV 113 + Q++ +P+ V VF+LG Sbjct: 78 KSHDQIKASLPEDAHGRVACAVFNLGY 104 >gi|154503156|ref|ZP_02040216.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149] gi|153796150|gb|EDN78570.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149] Length = 180 Score = 43.5 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G +DAT G G + C+ V A D AV ++ + + E+ + Sbjct: 6 IKEGDCCVDATAGNGNDTEFLCRLTGADGKVYAFDIQKAAVEHTKKRLEEAGLTERAKVI 65 Query: 89 QATFSQLQDYVPDKGVDGVV 108 +++YV + Sbjct: 66 LDGHEHMENYVRETVSAITF 85 >gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3] gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3] Length = 427 Score = 43.1 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|152977113|ref|YP_001376630.1| putative rRNA methylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025865|gb|ABS23635.1| putative rRNA methylase [Bacillus cytotoxicus NVH 391-98] Length = 190 Score = 43.1 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 5/54 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK 82 G +DAT G G+ F V D A+ +++ Sbjct: 17 AVKEGDYAVDATLGN-GHDACFLAEIVGENGKVFGFDIQKEAIENSTARLKEKG 69 >gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] Length = 427 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116] gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116] Length = 427 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] Length = 427 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q++ + D ++ D S+ + + Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|332701445|ref|ZP_08421533.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay] gi|332551594|gb|EGJ48638.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay] Length = 206 Score = 43.1 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 8/89 (8%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK-----EQ 84 PG + +DAT G G + + V D A+ +E + + Sbjct: 18 ALRPGDLAVDATLGNGRDAVLLAESVGQAGKVFCFDIQEVAIHRARERLAAAGLLERVQI 77 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F ++ V F+LG Sbjct: 78 FRAGHERLTEHLPPESQGHVRAATFNLGF 106 >gi|332709849|ref|ZP_08429806.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya majuscula 3L] gi|332351447|gb|EGJ31030.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya majuscula 3L] Length = 297 Score = 43.1 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +++++ PG ++LDA G G ++R ++ S V+ +D D ++ +E +D Sbjct: 42 VKEILGF--VRPGDMVLDAGCGTGQHARYLAEVASKVVGIDTDSARIAIAKEHCQDLDN 98 >gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] Length = 426 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + S V+A+D D + QE ++ K Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + QD+ D+ D ++ D S+ + + Sbjct: 295 QVICGDARYPQDWWQDEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|55823549|ref|YP_141990.1| rRNA methylase [Streptococcus thermophilus CNRZ1066] gi|55739534|gb|AAV63175.1| rRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus CNRZ1066] Length = 182 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ +++DAT G G + + V A D A+ + + D + Sbjct: 13 LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQAIGKTSQRLSDLGIE 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D+ + + +F+LG Sbjct: 68 NTELILDGHENLDHYVREPIRAAIFNLGY 96 >gi|322387483|ref|ZP_08061093.1| rRNA methylase [Streptococcus infantis ATCC 700779] gi|321142012|gb|EFX37507.1| rRNA methylase [Streptococcus infantis ATCC 700779] Length = 185 Score = 43.1 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L V++DAT G G+ F + V A D A+ + +++ Sbjct: 10 DFLAQVITKDDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALQKTSKRIQEAG 64 >gi|238021263|ref|ZP_04601689.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147] gi|237868243|gb|EEP69249.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147] Length = 191 Score = 43.1 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G +LD T G G+ V A D A++ + ++ ++ E+ L Sbjct: 18 IHAGDTVLDGTAGN-GHDTLLLAQLVGSAGKVYAFDIQDSALAATADRLQQHQLIERVQL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A L + + +F++G Sbjct: 77 IHAGHQHLAR-HVKQPIAAAIFNMGY 101 >gi|260583635|ref|ZP_05851383.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC 700633] gi|260158261|gb|EEW93329.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC 700633] Length = 186 Score = 43.1 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMR-- 79 L++ I PG ++DAT G G + + V A D A+ E ++ Sbjct: 13 LQECI-----KPGDCVIDATMGNGNDTIFLSKLVQSEGKVFAFDIQEAALIRTNEKIQEL 67 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D KE L + + L Y + + +F+LG Sbjct: 68 DTKENIHLICDSHANLSTY-VQQPIQAAIFNLGY 100 >gi|213861638|ref|ZP_03386108.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 88 Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A RIA AIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN+E+E Sbjct: 1 RFAKRIARAIVERNREQPMTRTKELAEVV-AAATPVKDKFKHPATRTFQAVRIWVNSELE 59 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLED 255 E+ Q L+S+ L GG L ++SFHSLED Sbjct: 60 EIEQALKSSLNVLAPGGRLSIISFHSLED 88 >gi|290893255|ref|ZP_06556242.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290557237|gb|EFD90764.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 191 Score = 43.1 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 +L KV+ PG ++DAT G G+ +V+ D AV + + Sbjct: 13 MLRKVV-----RPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLE 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q L A+ +++ Y + V +F+LG Sbjct: 67 NAGVSSQVELVCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|219848992|ref|YP_002463425.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485] gi|219543251|gb|ACL24989.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485] Length = 241 Score = 42.8 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 ++LL GK +LDA G G YS G+ VIA+D +P V + +++ + Sbjct: 40 LSLLPDVRGKRVLDAGCGPGVYSELLLDRGAEVIAIDANPKMVQLAHQRLQNRAQVLQAD 99 Query: 89 QAT 91 Sbjct: 100 LGQ 102 >gi|319946473|ref|ZP_08020710.1| rRNA methylase [Streptococcus australis ATCC 700641] gi|319747441|gb|EFV99697.1| rRNA methylase [Streptococcus australis ATCC 700641] Length = 185 Score = 42.8 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +VI ++DAT G G+ F + V A D A+ Q+ + + Sbjct: 12 LREVIT-----DQDTVVDATMGN-GHDTLFLAKLAKEVYAFDIQEQALVHTQKRLEEAG 64 >gi|255544606|ref|XP_002513364.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547272|gb|EEF48767.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] Length = 286 Score = 42.8 bits (99), Expect = 0.072, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 35 APGKVILDATFGAGGY-SRSFCKM------GSNVIALDRDPFAVSCGQETM--------R 79 G ++DAT G G+ + + KM +V +D A+ + + Sbjct: 92 QKGDTVVDATCGN-GHDTLALLKMVADESGNGHVYGMDIQSDALDNTSSLLDETVTSEEK 150 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + FS+ + ++ + V V F+LG Sbjct: 151 ELVKLFSICHSRMEEI--VPENTPVRLVAFNLGY 182 >gi|322391712|ref|ZP_08065179.1| rRNA methylase [Streptococcus peroris ATCC 700780] gi|321145422|gb|EFX40816.1| rRNA methylase [Streptococcus peroris ATCC 700780] Length = 185 Score = 42.8 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +++DAT G GY F + V A D A+ + +++ Sbjct: 10 DFLAEIINKEDIVVDATMGN-GYDTLFLARLAKQVYAFDIQEQALEKTSQRLQEAG 64 >gi|203282572|pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282573|pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282574|pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282575|pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282576|pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282577|pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282578|pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282579|pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282580|pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282581|pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum Length = 197 Score = 42.8 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G + + V D A++ + + D ++ +L Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 79 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y D V V+F+LG Sbjct: 80 KDGHQNMDKY-IDCPVKAVMFNLGY 103 >gi|281417413|ref|ZP_06248433.1| putative rRNA methylase [Clostridium thermocellum JW20] gi|281408815|gb|EFB39073.1| putative rRNA methylase [Clostridium thermocellum JW20] Length = 188 Score = 42.8 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G + + V D A++ + + D ++ +L Sbjct: 19 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y D V V+F+LG Sbjct: 79 KDGHQNMDKY-IDCPVKAVMFNLGY 102 >gi|125973214|ref|YP_001037124.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405] gi|256003689|ref|ZP_05428677.1| putative rRNA methylase [Clostridium thermocellum DSM 2360] gi|125713439|gb|ABN51931.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405] gi|255992250|gb|EEU02344.1| putative rRNA methylase [Clostridium thermocellum DSM 2360] gi|316940556|gb|ADU74590.1| rRNA methylase [Clostridium thermocellum DSM 1313] Length = 188 Score = 42.8 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G + + V D A++ + + D ++ +L Sbjct: 19 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y D V V+F+LG Sbjct: 79 KDGHQNMDKY-IDCPVKAVMFNLGY 102 >gi|307824127|ref|ZP_07654354.1| putative rRNA methylase [Methylobacter tundripaludum SV96] gi|307734911|gb|EFO05761.1| putative rRNA methylase [Methylobacter tundripaludum SV96] Length = 191 Score = 42.8 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQE--TMRDYKEQFSLF 88 PG + +DAT G G+ F +V D A+ E E +L Sbjct: 19 RPGDIAIDATVGN-GHDTVFLAEQVGPSGHVYGFDIQQAAIDSTLEKFRQAPSPEYLTLI 77 Query: 89 QATFSQLQD---YVPDKGVDGVVFDLGV 113 A+ + + + V ++F+LG Sbjct: 78 HASHADMDEKIPAYHHGKVRVIMFNLGY 105 >gi|49484008|ref|YP_041232.1| hypothetical protein SAR1846 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425874|ref|ZP_05602298.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428541|ref|ZP_05604939.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431175|ref|ZP_05607552.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433856|ref|ZP_05610214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436773|ref|ZP_05612817.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282904336|ref|ZP_06312224.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160] gi|282906161|ref|ZP_06314016.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909078|ref|ZP_06316896.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914555|ref|ZP_06322341.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899] gi|282919523|ref|ZP_06327258.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924901|ref|ZP_06332567.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283958514|ref|ZP_06375965.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus A017934/97] gi|293503633|ref|ZP_06667480.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293510649|ref|ZP_06669354.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293537190|ref|ZP_06671870.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015] gi|295428337|ref|ZP_06820966.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590699|ref|ZP_06949337.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|49242137|emb|CAG40837.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271568|gb|EEV03714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275382|gb|EEV06869.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278123|gb|EEV08771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281949|gb|EEV12086.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284124|gb|EEV14247.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282313267|gb|EFB43663.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282317333|gb|EFB47707.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282321736|gb|EFB52061.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899] gi|282327342|gb|EFB57637.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331453|gb|EFB60967.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595954|gb|EFC00918.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160] gi|283790663|gb|EFC29480.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920035|gb|EFD97103.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015] gi|291095299|gb|EFE25564.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291466540|gb|EFF09061.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295127737|gb|EFG57374.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575585|gb|EFH94301.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|315195675|gb|EFU26062.1| hypothetical protein CGSSa00_08420 [Staphylococcus aureus subsp. aureus CGS00] Length = 187 Score = 42.8 bits (99), Expect = 0.076, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLVKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|269125397|ref|YP_003298767.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183] gi|268310355|gb|ACY96729.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183] Length = 337 Score = 42.8 bits (99), Expect = 0.077, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 + LL+P P + I+D G G +S + + G+ V+ +D P ++ T + Sbjct: 23 VDLLDPQPDERIIDLGCGTGVFSAAIAERGAQVLGIDGSPEMIAQAAATYPQLSFVVADA 82 Query: 89 QAT 91 Sbjct: 83 HDF 85 >gi|310640916|ref|YP_003945674.1| rRNA methylase [Paenibacillus polymyxa SC2] gi|309245866|gb|ADO55433.1| Putative rRNA methylase [Paenibacillus polymyxa SC2] Length = 193 Score = 42.8 bits (99), Expect = 0.077, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 PG +DAT G G + K V D A+ + + + Sbjct: 18 VQPGDTAVDATVGTGADTLFLAKAAGKRGRVYGFDIQQAALDYARRRLEE 67 >gi|313632956|gb|EFR99886.1| methylase protein [Listeria seeligeri FSL N1-067] Length = 191 Score = 42.8 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG ++DAT G G+ +V+ D A++ + + Q L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIATTKTRLENAAVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 ICASHATIPEYAT-TPVRAAIFNLGY 101 >gi|78066871|ref|YP_369640.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383] gi|77967616|gb|ABB08996.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383] Length = 200 Score = 42.8 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 PG +LD G G ++R F G V+ALDRDP A++ + Sbjct: 31 PGGAVLDVAAGGGRHARWFASHGHPVVALDRDPTALAALRAI 72 >gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative,pseudogene [Trypanosoma brucei gambiense DAL972] Length = 251 Score = 42.8 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92 LD G GG + ++ VIA+D DP A+ ++ Y + + A + Sbjct: 59 KDKGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKNAEVYGVSTRVTFLCADY 118 Query: 93 SQLQDYVPDKGVDGVV 108 L+ Sbjct: 119 RTLKPENFSVNAVHCS 134 >gi|325109448|ref|YP_004270516.1| rRNA methylase [Planctomyces brasiliensis DSM 5305] gi|324969716|gb|ADY60494.1| rRNA methylase [Planctomyces brasiliensis DSM 5305] Length = 185 Score = 42.8 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 20 HVP-V-LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSC 73 H+ V + + PG ++DAT G G+ V A D P A+ Sbjct: 3 HISLVDMAHAAVQQ-AVQPGDCVIDATAGN-GHDTLILAEAVFPEGQVHAFDIQPSAIEQ 60 Query: 74 GQETM-RDYKEQFSLFQATFSQLQ 96 + + + SL+QA+ +++ Sbjct: 61 TRLRLPANLSSIVSLYQASHAEMP 84 >gi|46447254|ref|YP_008619.1| hypothetical protein pc1620 [Candidatus Protochlamydia amoebophila UWE25] gi|46400895|emb|CAF24344.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 182 Score = 42.8 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 41 LDATFGAGGYSRSFCKMG-----SNVIALDRDPFAVSCGQETMRDYKE-----QFSLFQA 90 +DAT G G + C++ V A D A+ + +R++ Q + Sbjct: 2 IDATCGNGNDTLKLCQLLLSNGDGKVYAFDNQSDAIDKTKVLLREHLNLDQFKQINFILG 61 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 S+ DYV + +V++LG Sbjct: 62 CHSKFSDYVLPNTIKLIVYNLGY 84 >gi|309800616|ref|ZP_07694760.1| rRNA methylase [Streptococcus infantis SK1302] gi|308115762|gb|EFO53294.1| rRNA methylase [Streptococcus infantis SK1302] Length = 185 Score = 42.8 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +++DAT G G+ F + V A D A+ + +++ Sbjct: 10 DFLAQVITQEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTSQRLQEAD 64 >gi|282917021|ref|ZP_06324779.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus D139] gi|283770839|ref|ZP_06343731.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|282319508|gb|EFB49860.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus D139] gi|283460986|gb|EFC08076.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus H19] Length = 187 Score = 42.8 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|326803839|ref|YP_004321657.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a] gi|326650099|gb|AEA00282.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a] Length = 188 Score = 42.4 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 14/103 (13%) Query: 24 LLEKVIA----LLN--PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSC 73 +L+ VI ++ G LDAT G G+ V D A+ Sbjct: 1 MLKNVIEVSHHIIKGHLQTGMTALDATIGN-GHDTLLLAQIVGQSGQVYGFDLQKQAIRA 59 Query: 74 GQETMR--DYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGV 113 Q + +EQ SL+ + +++ Y D +D V+F+LG Sbjct: 60 TQALLEKHHCQEQVSLYHDSHAKISQYLKADDYLDLVIFNLGY 102 >gi|299143842|ref|ZP_07036922.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518327|gb|EFI42066.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 188 Score = 42.4 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 37 GKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF 92 GKV LDAT G G S + A D A++ E ++ E F LF + Sbjct: 23 GKVCLDATCGRGNDSLKLLDKIGIKGFLYACDIQEEAINSTMELLKSKGYENFKLFNKSH 82 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 +++ DY+ + + ++++LG Sbjct: 83 TEVFDYIKE-PISLIIYNLGY 102 >gi|257065730|ref|YP_003151986.1| putative rRNA methylase [Anaerococcus prevotii DSM 20548] gi|256797610|gb|ACV28265.1| putative rRNA methylase [Anaerococcus prevotii DSM 20548] Length = 181 Score = 42.4 bits (98), Expect = 0.097, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 10/94 (10%) Query: 24 LLEKVIALLNPAPGKV--ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79 L+++++ + +D T G G S + +IA D A + + Sbjct: 8 LVKEIL----IRKKDIDLAVDMTAGNGNDSAFILDVLGAKKLIAFDIQEAARENTLKLLG 63 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F+ + + + YV + +D V++LG Sbjct: 64 PRDN-FTFVLDSHAHIDKYVKE-KIDLAVYNLGY 95 >gi|217964188|ref|YP_002349866.1| methylase protein [Listeria monocytogenes HCC23] gi|217333458|gb|ACK39252.1| methylase protein [Listeria monocytogenes HCC23] gi|307571245|emb|CAR84424.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria monocytogenes L99] Length = 191 Score = 42.4 bits (98), Expect = 0.097, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 PG ++DAT G G+ +V+ D AV + + + + Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76 Query: 90 ATFSQLQ-DYVPDKGVDGVVFDLGV 113 S + + V +F+LG Sbjct: 77 VCASHARIPVYTSRPVRAAIFNLGY 101 >gi|253579059|ref|ZP_04856330.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850002|gb|EES77961.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 187 Score = 42.4 bits (98), Expect = 0.100, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR--DYKEQFS 86 G +DAT G G + V+A D A++ Q+ + E + Sbjct: 17 QVQEGDFCIDATMGNGNDT-LLLSQLCGESGKVLAFDIQEQALTATQKRLNAGHVPENYR 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + + + +Y V +VF+ G Sbjct: 76 LLLESHANMAEYATPDSVSCIVFNFGY 102 >gi|317496230|ref|ZP_07954590.1| SAM-dependent methyltransferase [Gemella moribillum M424] gi|316913805|gb|EFV35291.1| SAM-dependent methyltransferase [Gemella moribillum M424] Length = 185 Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 9/92 (9%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE 83 L++VI +++DAT G G + + + V A D A+ + ++ Sbjct: 12 LKEVID-----KNSIVVDATCGNGNDTLFLAQSAAKKVYAFDIQQQAIDSTLKLLQTNNC 66 Query: 84 --QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + S +Y+ + + VVF+LG Sbjct: 67 LEKCEVILDSHSNFDNYISE-PIKAVVFNLGY 97 >gi|261408931|ref|YP_003245172.1| putative rRNA methylase [Paenibacillus sp. Y412MC10] gi|261285394|gb|ACX67365.1| putative rRNA methylase [Paenibacillus sp. Y412MC10] Length = 196 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 10/89 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ------- 84 PG + LDAT G G + K V A D A+ +E + Sbjct: 19 RPGDIALDATAGTGADTLYLAKCTGSKGKVYAFDIQEQALQLTRERLDKEPPGTLAEVSL 78 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + + ++F+LG Sbjct: 79 LLQSHSLMRECVPEIEHGRMGAIMFNLGY 107 >gi|118468434|ref|YP_887597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118169721|gb|ABK70617.1| methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 243 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +AL+ G+ ILDA G G Y+ K G+++I D+ P V + + + Sbjct: 36 CLALIGDVAGRTILDAACGPGLYAEELAKRGASLIGFDQSPRMVELARARVPSGDFRVHD 95 Query: 88 FQATFS 93 Sbjct: 96 LAGPLD 101 >gi|298368465|ref|ZP_06979783.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314] gi|298282468|gb|EFI23955.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314] Length = 186 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 G LD T G G+ G V A D P A+ + + + L Sbjct: 19 KNGDAALDGTAGN-GHDTLLLAQCVGGGKVWAFDVQPQALQQTRRRLEEAGVSAELICDG 77 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 +L DY D+ + VF+ G Sbjct: 78 HEKLADY-VDRPLTAAVFNFGW 98 >gi|115464835|ref|NP_001056017.1| Os05g0511700 [Oryza sativa Japonica Group] gi|113579568|dbj|BAF17931.1| Os05g0511700 [Oryza sativa Japonica Group] gi|218197087|gb|EEC79514.1| hypothetical protein OsI_20592 [Oryza sativa Indica Group] gi|222632196|gb|EEE64328.1| hypothetical protein OsJ_19168 [Oryza sativa Japonica Group] Length = 260 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSCGQETMRDYKEQ--- 84 G ++DAT G G + + KM V LD A++ ++ Sbjct: 85 VRKGDTVVDATCGNGNDTFAMLKMVADERVQGRVYGLDIQESAIASTSSFLKMAVNSHEL 144 Query: 85 -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F++ + ++ D V V F+LG Sbjct: 145 ELVKLFTICHSRMEEV--VPKDFPVRLVAFNLGY 176 >gi|52081533|ref|YP_080324.1| hypothetical protein BL00061 [Bacillus licheniformis ATCC 14580] gi|319647443|ref|ZP_08001664.1| YtqB protein [Bacillus sp. BT1B_CT2] gi|52004744|gb|AAU24686.1| conserved protein YtqB [Bacillus licheniformis ATCC 14580] gi|317390489|gb|EFV71295.1| YtqB protein [Bacillus sp. BT1B_CT2] Length = 194 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90 G +++DAT G G+ F +V A D A+ E + +YK++ +L Q Sbjct: 20 EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 78 Query: 91 TFSQL 95 + +L Sbjct: 79 SHDEL 83 >gi|218461825|ref|ZP_03501916.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5] Length = 40 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 22/37 (59%) Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 IALDRDP A++ GQ + + + L + FS L D+ Sbjct: 2 IALDRDPTAIAAGQAMVAAHGGRLRLVHSQFSHLADH 38 >gi|220929163|ref|YP_002506072.1| rRNA methylase [Clostridium cellulolyticum H10] gi|219999491|gb|ACL76092.1| putative rRNA methylase [Clostridium cellulolyticum H10] Length = 188 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 27/191 (14%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81 ++++ + G +++DAT G G+ +F G V + D A++ + + Sbjct: 12 HEIVSRVVCN-GDIVVDATAGN-GHDTAFLAKLVGAGGLVYSFDIQESALNTTRNKLEAE 69 Query: 82 K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +L + Y +K + +F+LG + R Sbjct: 70 NLLNRVNLIHDGHQNMMKY-VNKPIKAAMFNLGY------------LPGGDHNIGTRGGT 116 Query: 140 SGISASDVVNQANVKDLTRILGILG------EEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 + + + + I+ G E+ + I ++ S + + Sbjct: 117 TIEAIKSAMELVVPHGIISIVVYYGGDSGFDEKNEVINYIKTIDCKKFSVMQTEFVNQIN 176 Query: 194 LIQKTVYFSKN 204 V KN Sbjct: 177 CPPIFVCMEKN 187 >gi|118444903|ref|YP_878837.1| rRNA methylase [Clostridium novyi NT] gi|118135359|gb|ABK62403.1| putative rRNA methylase [Clostridium novyi NT] Length = 188 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M + + +++ L ++ IA+ G + +DAT G G + ++ + + D Sbjct: 1 MKNVLTNSMN-----LAKE-IAIKKLQEGDIAVDATMGNGNDTVFLARLVGEKGKIYSFD 54 Query: 66 RDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ ++ + D K + L + Y+ + V V+F+LG Sbjct: 55 VQSTAIENTKKRISDNKINTEIELIHDGHENIDKYIKE-KVKLVMFNLGY 103 >gi|52786912|ref|YP_092741.1| YtqB [Bacillus licheniformis ATCC 14580] gi|52349414|gb|AAU42048.1| YtqB [Bacillus licheniformis ATCC 14580] Length = 225 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90 G +++DAT G G+ F +V A D A+ E + +YK++ +L Q Sbjct: 51 EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 109 Query: 91 TFSQL 95 + +L Sbjct: 110 SHDEL 114 >gi|323439583|gb|EGA97303.1| hypothetical protein SAO11_1596 [Staphylococcus aureus O11] Length = 187 Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|284042473|ref|YP_003392813.1| methyltransferase type 11 [Conexibacter woesei DSM 14684] gi|283946694|gb|ADB49438.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684] Length = 249 Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 I LL+ PG ++DA G G Y + + G +D P A++ ++ Sbjct: 44 IELLDLRPGTTVVDAGCGFGRYCAALLEHGMEATGIDISPAAIAEAEKR 92 >gi|15924753|ref|NP_372287.1| hypothetical protein SAV1763 [Staphylococcus aureus subsp. aureus Mu50] gi|15927338|ref|NP_374871.1| hypothetical protein SA1582 [Staphylococcus aureus subsp. aureus N315] gi|21283433|ref|NP_646521.1| hypothetical protein MW1704 [Staphylococcus aureus subsp. aureus MW2] gi|49486586|ref|YP_043807.1| hypothetical protein SAS1687 [Staphylococcus aureus subsp. aureus MSSA476] gi|57652059|ref|YP_186644.1| hypothetical protein SACOL1811 [Staphylococcus aureus subsp. aureus COL] gi|87161375|ref|YP_494401.1| hypothetical protein SAUSA300_1707 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195575|ref|YP_500381.1| hypothetical protein SAOUHSC_01878 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268239|ref|YP_001247182.1| hypothetical protein SaurJH9_1816 [Staphylococcus aureus subsp. aureus JH9] gi|150394307|ref|YP_001316982.1| hypothetical protein SaurJH1_1851 [Staphylococcus aureus subsp. aureus JH1] gi|151221866|ref|YP_001332688.1| hypothetical protein NWMN_1654 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980080|ref|YP_001442339.1| hypothetical protein SAHV_1749 [Staphylococcus aureus subsp. aureus Mu3] gi|161509979|ref|YP_001575638.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141483|ref|ZP_03565976.1| hypothetical protein SauraJ_07563 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315864|ref|ZP_04839077.1| hypothetical protein SauraC_06907 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732414|ref|ZP_04866579.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734455|ref|ZP_04868620.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255006549|ref|ZP_05145150.2| hypothetical protein SauraM_08770 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794144|ref|ZP_05643123.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258415848|ref|ZP_05682119.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258420677|ref|ZP_05683616.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258443785|ref|ZP_05692124.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258445996|ref|ZP_05694172.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448276|ref|ZP_05696403.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258452312|ref|ZP_05700325.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454196|ref|ZP_05702167.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049070|ref|ZP_06021948.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30] gi|262053062|ref|ZP_06025235.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3] gi|269203399|ref|YP_003282668.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus ED98] gi|282893255|ref|ZP_06301489.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117] gi|282925648|ref|ZP_06333297.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765] gi|282927890|ref|ZP_06335501.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A10102] gi|284024808|ref|ZP_06379206.1| hypothetical protein Saura13_09455 [Staphylococcus aureus subsp. aureus 132] gi|294849922|ref|ZP_06790661.1| mraW [Staphylococcus aureus A9754] gi|295406072|ref|ZP_06815880.1| mraW [Staphylococcus aureus A8819] gi|296276045|ref|ZP_06858552.1| hypothetical protein SauraMR_06837 [Staphylococcus aureus subsp. aureus MR1] gi|297207524|ref|ZP_06923960.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245003|ref|ZP_06928880.1| mraW [Staphylococcus aureus A8796] gi|300911608|ref|ZP_07129052.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|304380644|ref|ZP_07363315.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701557|dbj|BAB42850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247535|dbj|BAB57925.1| similar to SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21204874|dbj|BAB95569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49245029|emb|CAG43490.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286245|gb|AAW38339.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|87127349|gb|ABD21863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203133|gb|ABD30943.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741308|gb|ABQ49606.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH9] gi|149946759|gb|ABR52695.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH1] gi|150374666|dbj|BAF67926.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722215|dbj|BAF78632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368788|gb|ABX29759.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723804|gb|EES92533.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727509|gb|EES96238.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257788116|gb|EEV26456.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839441|gb|EEV63914.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257843281|gb|EEV67691.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257851191|gb|EEV75134.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257855238|gb|EEV78177.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858515|gb|EEV81391.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257860037|gb|EEV82872.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257863648|gb|EEV86405.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159039|gb|EEW44110.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3] gi|259162887|gb|EEW47451.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30] gi|262075689|gb|ACY11662.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus ED98] gi|269941239|emb|CBI49627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590400|gb|EFB95479.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A10102] gi|282592428|gb|EFB97442.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765] gi|282764573|gb|EFC04699.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117] gi|285817443|gb|ADC37930.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus aureus 04-02981] gi|294823261|gb|EFG39691.1| mraW [Staphylococcus aureus A9754] gi|294969069|gb|EFG45090.1| mraW [Staphylococcus aureus A8819] gi|296887860|gb|EFH26757.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178083|gb|EFH37331.1| mraW [Staphylococcus aureus A8796] gi|298695029|gb|ADI98251.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300887029|gb|EFK82230.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|302333425|gb|ADL23618.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751588|gb|ADL65765.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340751|gb|EFM06680.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830139|emb|CBX34981.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130599|gb|EFT86585.1| hypothetical protein CGSSa03_10160 [Staphylococcus aureus subsp. aureus CGS03] gi|315197231|gb|EFU27570.1| hypothetical protein CGSSa01_01071 [Staphylococcus aureus subsp. aureus CGS01] gi|320140772|gb|EFW32623.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143789|gb|EFW35563.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314437|gb|AEB88850.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329727003|gb|EGG63460.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21189] gi|329727361|gb|EGG63817.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21172] gi|329733230|gb|EGG69567.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21193] Length = 187 Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|283471027|emb|CAQ50238.1| conserved protein YtqB [Staphylococcus aureus subsp. aureus ST398] Length = 187 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNYVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] Length = 465 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 +L+P PG ++D GG + + + A D D F + +E ++ Sbjct: 268 ILDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAFDIDEFRIKRMKEILKRMGVNIVK 327 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + D V+ D +S + ++ Sbjct: 328 IIRKDGRKAPKILGRGIADRVLLDAPCTSSGTIGKNPELRWR 369 >gi|288553841|ref|YP_003425776.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus OF4] gi|288545001|gb|ADC48884.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus OF4] Length = 190 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 17/150 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78 LLE+ I+ PG + +D T G G+ F +V ++D A++ + + Sbjct: 13 LLERSIS-----PGDIAVDCTAGN-GHDTLFLANLVGNTGHVYSVDIQETAITNTKLKVG 66 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGV--SSMQIDCGDRGFSFQKSGP 132 + + +L Q+ + +P + V +F+LG + + + Sbjct: 67 EAEVANRVTLHQSGHEHISTLIPKEEYGRVKGAIFNLGYLPGGDKSIVTQSQTTIKAIDS 126 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGI 162 L M G+ + + R Sbjct: 127 LLELMPKGGMIVLVIYHGHAEGAAERDHLR 156 >gi|152992522|ref|YP_001358243.1| hypothetical protein SUN_0928 [Sulfurovum sp. NBC37-1] gi|151424383|dbj|BAF71886.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 439 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 V+ LL+P PG+ ILDA G G + + G+ VI +D V ++ + + Sbjct: 214 VVDLLDPKPGEKILDAGCGEGALAEEIVRRGAEVIGVDLSAEMVDACRDRWIEAQVCSVT 273 Query: 88 FQATFSQLQDYVPDKGVDGV 107 + + V Sbjct: 274 DLPWHEAFDAVFSNATLHWV 293 >gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium 6_1_63FAA] Length = 198 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRRSQYAKQIEFC 118 >gi|47093774|ref|ZP_00231523.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|254931605|ref|ZP_05264964.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254993628|ref|ZP_05275818.1| hypothetical protein LmonocytoFSL_12013 [Listeria monocytogenes FSL J2-064] gi|47017861|gb|EAL08645.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|293583158|gb|EFF95190.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|328465028|gb|EGF36307.1| hypothetical protein LM1816_09707 [Listeria monocytogenes 1816] gi|328474002|gb|EGF44815.1| hypothetical protein LM220_15815 [Listeria monocytogenes 220] gi|332312104|gb|EGJ25199.1| Methylase protein [Listeria monocytogenes str. Scott A] Length = 192 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|116333701|ref|YP_795228.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367] gi|116099048|gb|ABJ64197.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367] Length = 188 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H LL++ + PG ++DAT G G + +VI D A+ Q+ Sbjct: 11 HT--LLKECVG-----PGATVIDATVGKGNDTVFLANLVGKSGHVIGFDIQQAALDATQQ 63 Query: 77 TM 78 + Sbjct: 64 QL 65 >gi|323442030|gb|EGA99666.1| hypothetical protein SAO46_2058 [Staphylococcus aureus O46] Length = 187 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|258424175|ref|ZP_05687057.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257845796|gb|EEV69828.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 187 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|77408629|ref|ZP_00785363.1| conserved hypothetical protein [Streptococcus agalactiae COH1] gi|77172747|gb|EAO75882.1| conserved hypothetical protein [Streptococcus agalactiae COH1] Length = 188 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +VI + LDAT G G + K V A D A++ + + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + + +F+LG Sbjct: 68 NAELILDGHENLEQYVHTPLRAAIFNLGY 96 >gi|22537547|ref|NP_688398.1| hypothetical protein SAG1400 [Streptococcus agalactiae 2603V/R] gi|25011512|ref|NP_735907.1| hypothetical protein gbs1470 [Streptococcus agalactiae NEM316] gi|76787418|ref|YP_330041.1| hypothetical protein SAK_1433 [Streptococcus agalactiae A909] gi|76797669|ref|ZP_00779938.1| methyltransferase [Streptococcus agalactiae 18RS21] gi|77411510|ref|ZP_00787854.1| conserved hypothetical protein [Streptococcus agalactiae CJB111] gi|22534429|gb|AAN00271.1|AE014256_3 conserved hypothetical protein [Streptococcus agalactiae 2603V/R] gi|24413051|emb|CAD47129.1| Unknown [Streptococcus agalactiae NEM316] gi|76562475|gb|ABA45059.1| conserved hypothetical protein [Streptococcus agalactiae A909] gi|76586963|gb|EAO63452.1| methyltransferase [Streptococcus agalactiae 18RS21] gi|77162436|gb|EAO73403.1| conserved hypothetical protein [Streptococcus agalactiae CJB111] gi|319745348|gb|EFV97662.1| rRNA methylase [Streptococcus agalactiae ATCC 13813] Length = 188 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +VI + LDAT G G + K V A D A++ + + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + + +F+LG Sbjct: 68 NAELILDGHENLEQYVHTPLRAAIFNLGY 96 >gi|254564064|ref|YP_003071159.1| hypothetical protein METDI5751 [Methylobacterium extorquens DM4] gi|254271342|emb|CAX27354.1| putative protein-L-isoaspartate O-methyltransferase [Methylobacterium extorquens DM4] Length = 216 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79 P+LL ++I L PG LD G G GY + + V+AL+ DP ++ +E + Sbjct: 68 PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIAAARERLG 125 Query: 80 D 80 D Sbjct: 126 D 126 >gi|331092166|ref|ZP_08340996.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401938|gb|EGG81512.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium 2_1_46FAA] Length = 186 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 G+ +DAT G G + ++ V A D A+ +E + + K Sbjct: 18 VKEGETCVDATAGNGNDTLLLAELVGEKGKVYAFDIQEQALRRTKERLEEKK 69 >gi|82751349|ref|YP_417090.1| hypothetical protein SAB1621 [Staphylococcus aureus RF122] gi|82656880|emb|CAI81310.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 187 Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + + +F+LG Sbjct: 78 ENIEHHINDAHKGHIAAAIFNLGY 101 >gi|283781585|ref|YP_003372340.1| methyltransferase type 11 [Pirellula staleyi DSM 6068] gi|283440038|gb|ADB18480.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068] Length = 772 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 8/80 (10%) Query: 34 PAPGKVILD--ATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 PG +LD G G + + VI +D PFA+ Q D +++ Sbjct: 237 IRPGDTVLDAACGLGYGSH---LLARNTKAERVIGIDGSPFAIDYAQANFTDERQRTEFR 293 Query: 89 QATFSQLQDYVPDKGVDGVV 108 + + D V VV Sbjct: 294 VGFLPECLAPIADHSVHAVV 313 >gi|325265811|ref|ZP_08132497.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982449|gb|EGC18075.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 222 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 14/102 (13%) Query: 24 LLEKVI----ALLN--PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSC 73 +L +I +LL G ++D T G G+ V A D A+ Sbjct: 24 MLADIIPFAHSLLRVHIREGDCVMDGTAGN-GHDTLLLAQCVGETGRVFAFDIQAAAIEA 82 Query: 74 GQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + ++ + +L Q Y+ + VF+ G Sbjct: 83 TRARLAEHGLLPRVTLIQDGHQHAAQYIRQ-PLRAAVFNFGY 123 >gi|308068128|ref|YP_003869733.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681] gi|305857407|gb|ADM69195.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681] Length = 193 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 10/90 (11%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQ----FS 86 PG +DAT G G + K V D A+ C + + + S Sbjct: 18 VQPGDTAIDATVGTGADTLFLAKAAGKRGRVYGFDIQQEALHCARRRLEENASPSLAEVS 77 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + Q+++ VPD V V+F+LG Sbjct: 78 LQLQSHEQMREAVPDMLHGKVAAVMFNLGY 107 >gi|169334036|ref|ZP_02861229.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM 17244] gi|169258753|gb|EDS72719.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM 17244] Length = 185 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-E 83 +I G ++LD T G G + K V A D AV ++ + + + Sbjct: 12 IIDN-KVVSGNIVLDMTMGNGNDTLYLSKKVGEKGKVYAFDIQSQAVKNTKKLLDENRIN 70 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + + +YV D VD V++LG Sbjct: 71 NAVLINDSHENVLNYVTD-KVDFAVYNLGY 99 >gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 276 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 G GG +R+ G+ VIA++RD A++ E Y + + A + + Sbjct: 54 GPGGLTRALLDAGARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEMP 113 Query: 105 DGVVFDLGVS 114 +V +L + Sbjct: 114 RRIVANLPYN 123 >gi|55821621|ref|YP_140063.1| rRNA methylase [Streptococcus thermophilus LMG 18311] gi|116628334|ref|YP_820953.1| rRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus LMD-9] gi|55737606|gb|AAV61248.1| rRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus LMG 18311] gi|116101611|gb|ABJ66757.1| SAM-dependent methyltransferase [Streptococcus thermophilus LMD-9] gi|312278960|gb|ADQ63617.1| RRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus ND03] Length = 182 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ +++DAT G G + + V A D A+ + + D + Sbjct: 13 LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D+ + + +F+LG Sbjct: 68 NTELILDGHENLDHYVREPIRAAIFNLGY 96 >gi|282911386|ref|ZP_06319188.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282325081|gb|EFB55391.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|312437781|gb|ADQ76852.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] Length = 187 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P +++DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPVGHVYGFDIQDLALENTRDKVKDFNHVSLVKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 443 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +L+P PG+ ++D GG + K + A D D + ++ +R + + Sbjct: 245 ILSPEPGETVVDLAAAPGGKTAHMAELMKNEGKIYAFDVDSERIKRMKQILRWAGVEIAE 304 Query: 88 FQA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + +++ +K D V+ D +S + ++ Sbjct: 305 VKKLDGRKAPEFLGEKIADRVLLDAPCTSDGTIAKNPELRWR 346 >gi|227485460|ref|ZP_03915776.1| rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236590|gb|EEI86605.1| rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 180 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 42 DATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 D T G G S+ + + + D A ++ + D ++F + ++ Y+ Sbjct: 24 DLTVGTGKDSKYILENTEVARLYGFDIQKEAEKEAKKLIGD-DQRFIFHLDNHANIEKYI 82 Query: 100 PDKGVDGVVFDLGV 113 + G+D +++LG Sbjct: 83 KE-GLDLAIYNLGY 95 >gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM 12042] gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM 10507] gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC 49176] gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM 12042] gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM 10507] gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC 49176] gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 255 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRRSQYAKQIEFC 118 >gi|15615847|ref|NP_244151.1| hypothetical protein BH3285 [Bacillus halodurans C-125] gi|10175908|dbj|BAB07004.1| BH3285 [Bacillus halodurans C-125] Length = 190 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQ 89 PG + +D T G G+ F +V D A+ + +++ + E+ +LF Sbjct: 20 PGSIAVDGTTGN-GHDTVFLAKLVGETGHVYGFDVQEQAIHQTNKRVKELGFPERVTLFH 78 Query: 90 ATFSQLQDY---VPDKGVDGVVFDLGV 113 A+ Q+ + +F+LG Sbjct: 79 ASHEQVATLIPPDQHPNIKAAIFNLGY 105 >gi|254832065|ref|ZP_05236720.1| methylase protein [Listeria monocytogenes 10403S] Length = 191 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|47097507|ref|ZP_00235048.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|254829466|ref|ZP_05234153.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254898171|ref|ZP_05258095.1| methylase protein [Listeria monocytogenes J0161] gi|254912336|ref|ZP_05262348.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936663|ref|ZP_05268360.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47014122|gb|EAL05114.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258601881|gb|EEW15206.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609259|gb|EEW21867.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590317|gb|EFF98651.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 191 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|103488037|ref|YP_617598.1| methyltransferase type 11 [Sphingopyxis alaskensis RB2256] gi|98978114|gb|ABF54265.1| Methyltransferase type 11 [Sphingopyxis alaskensis RB2256] Length = 228 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 + L P G+ ILD G G S + G+ +I LD DP + + R + Sbjct: 45 LEQLAPRNGETILDVGCGTG--SFALLMKCRAPGARIIGLDPDPDVLHRAEAKARKAGVE 102 Query: 85 FSLFQATFSQLQDY 98 Q S Sbjct: 103 IEWRQGFASDAATL 116 >gi|325663507|ref|ZP_08151917.1| hypothetical protein HMPREF0490_02658 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470406|gb|EGC73637.1| hypothetical protein HMPREF0490_02658 [Lachnospiraceae bacterium 4_1_37FAA] Length = 187 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 7/84 (8%) Query: 36 PGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 G + +DAT G G+ VIA D AV + + E+ + Sbjct: 20 EGDICIDATAGN-GHDTLLLAELVGASGRVIAFDIQEQAVQETKRKIDKCGYAERTEVVL 78 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y + V + F+ G Sbjct: 79 DSHVHMGAYAKENTVSCITFNFGY 102 >gi|194098054|ref|YP_002001102.1| hypothetical protein NGK_0477 [Neisseria gonorrhoeae NCCP11945] gi|254493236|ref|ZP_05106407.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594375|ref|ZP_06128542.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596371|ref|ZP_06130538.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268598499|ref|ZP_06132666.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268600852|ref|ZP_06135019.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603157|ref|ZP_06137324.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681638|ref|ZP_06148500.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268683866|ref|ZP_06150728.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686108|ref|ZP_06152970.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291044339|ref|ZP_06570048.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|193933344|gb|ACF29168.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512276|gb|EEH61621.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268547764|gb|EEZ43182.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268550159|gb|EEZ45178.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268582630|gb|EEZ47306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268584983|gb|EEZ49659.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587288|gb|EEZ51964.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268621922|gb|EEZ54322.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624150|gb|EEZ56550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626392|gb|EEZ58792.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291011233|gb|EFE03229.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317163791|gb|ADV07332.1| hypothetical protein NGTW08_0360 [Neisseria gonorrhoeae TCDC-NG08107] Length = 117 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL + + G LD T G G+ F V A D P A++ + ++ Sbjct: 11 LLREAL-----PEGGNALDGTAGN-GHDTLFLAQTAGNRGKVWAFDIQPQALNNTRCRLQ 64 Query: 80 DYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L+ Y+P+ +D VF+ G Sbjct: 65 EAGYSNVRLILDGHENLKQYIPE-PLDAAVFNFGW 98 >gi|77413361|ref|ZP_00789555.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|77160603|gb|EAO71720.1| conserved hypothetical protein [Streptococcus agalactiae 515] Length = 188 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +VI + LDAT G G + K V A D A++ + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTGQGIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L+ YV + +F+LG Sbjct: 68 NVELILDGHENLEQYVH-TPLRAAIFNLGY 96 >gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] Length = 426 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + S V+A+D D + QE ++ K Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + QD+ + D ++ D S+ + + Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573] gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573] Length = 438 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + S V+A+D D + QE ++ K Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + QD+ + D ++ D S+ + + Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 348 >gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603] gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603] Length = 438 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + S V+A+D D + QE ++ K Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + QD+ + D ++ D S+ + + Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 348 >gi|159480252|ref|XP_001698198.1| hypothetical protein CHLREDRAFT_41764 [Chlamydomonas reinhardtii] gi|158273696|gb|EDO99483.1| predicted protein [Chlamydomonas reinhardtii] Length = 221 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 13/61 (21%) Query: 30 ALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L+PAPG ++D T + + + VIA D+DP ++ + Sbjct: 13 HALSPAPGWTVVDCCAAPGNKTT-----HLAAIMRNKGRVIAFDKDPKRLARLKANAERT 67 Query: 82 K 82 Sbjct: 68 G 68 >gi|332188118|ref|ZP_08389848.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17] gi|332011832|gb|EGI53907.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17] Length = 228 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFS 86 +A L P G+ ++D G G ++ + VI LD D A+ + + Sbjct: 34 LAALAPKAGETVVDVGCGTGSFALMLKQAEPRTQVIGLDPDAEALDIARHKAAVRRADID 93 Query: 87 LFQAT 91 Q Sbjct: 94 WRQGF 98 >gi|118579003|ref|YP_900253.1| putative rRNA methylase [Pelobacter propionicus DSM 2379] gi|118501713|gb|ABK98195.1| putative rRNA methylase [Pelobacter propionicus DSM 2379] Length = 196 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG + +DAT G G+ V A D A+S + E+ L Sbjct: 27 IQPGDLAVDATCGN-GHDTLLLANLVGPSGRVWAFDVQERAISATSRRLGQAGMAERVEL 85 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 L + VP V GV+F+LG Sbjct: 86 ILGGHESLAEQVP-TPVRGVMFNLGY 110 >gi|312864561|ref|ZP_07724792.1| putative rRNA methylase [Streptococcus downei F0415] gi|311099688|gb|EFQ57901.1| putative rRNA methylase [Streptococcus downei F0415] Length = 182 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL ++ IA +DAT G G + + V A D A++ QE + Sbjct: 16 VLAKEAIA----------VDATMGNGNDTAFLAGLVKKVYAFDVQKQALAKTQERLASQH 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + + +F+LG Sbjct: 66 LTNAELILDGHENLDKYVSEPIRAAIFNLGY 96 >gi|187735461|ref|YP_001877573.1| rRNA methylase [Akkermansia muciniphila ATCC BAA-835] gi|187425513|gb|ACD04792.1| putative rRNA methylase [Akkermansia muciniphila ATCC BAA-835] Length = 235 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK 82 PG ++DAT G G+ F V A D A+ +E + Sbjct: 67 PGDAVVDATAGN-GHDTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEG 116 >gi|329922238|ref|ZP_08277940.1| putative rRNA methylase [Paenibacillus sp. HGF5] gi|328942275|gb|EGG38545.1| putative rRNA methylase [Paenibacillus sp. HGF5] Length = 196 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 10/89 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-------EQ 84 PG + LDAT G G + K V A D A+ +E + Sbjct: 19 RPGDIALDATAGTGADTLYLAKCTGSKGKVYAFDIQEQALQLTRERLDKEPTGTLAEVSL 78 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + + ++F+LG Sbjct: 79 LLQSHSLMRECVPEIEHGRMGAIMFNLGY 107 >gi|242091049|ref|XP_002441357.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor] gi|241946642|gb|EES19787.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor] Length = 272 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 13/93 (13%) Query: 34 PAPGKVILDATFGAGGYSRSFCK------MGSNVIALDRDPFAVSCGQETMR------DY 81 G ++DAT G G + + K V +D A+ ++ Sbjct: 96 VQKGDTVVDATCGNGNDTLALLKMVADETAQGRVYGMDIQDSAIESTSSFLKMSVDDDHQ 155 Query: 82 KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGV 113 + LF S++++ D V V F+LG Sbjct: 156 RGLVKLFPICHSRMEEIVPKDAPVRLVAFNLGY 188 >gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] Length = 281 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%) Query: 42 DATFGA--------GGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 D T G+ GG +R+ G+ VIA++RD A++ E Y + + A Sbjct: 42 DLTVGSVIEIGPGPGGLTRALLDAGARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADA 101 Query: 93 SQLQDYVPDKGVDGVVFDLGVS 114 + + +V +L + Sbjct: 102 MTVDAAELGEVPRRIVANLPYN 123 >gi|168187189|ref|ZP_02621824.1| possible rRNA methylase [Clostridium botulinum C str. Eklund] gi|169294843|gb|EDS76976.1| possible rRNA methylase [Clostridium botulinum C str. Eklund] Length = 189 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 9/96 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 L ++ IA+ G + +DAT G G + F V + D A+ ++ + Sbjct: 12 LAKE-IAIKKLQEGDIAVDATMGNGNDTV-FLARLVGESGKVYSFDVQSTAIENTKKRII 69 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D K + L + Y+ + + V+F+LG Sbjct: 70 DNKINTKIELIHDGHENIDKYINE-KLKLVMFNLGY 104 >gi|325690968|gb|EGD32968.1| rRNA methylase [Streptococcus sanguinis SK115] gi|325695068|gb|EGD36971.1| rRNA methylase [Streptococcus sanguinis SK150] Length = 183 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 L +V+ +++DAT G G+ F + V A D AV ++ + + Sbjct: 12 LAEVVT-----KEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQGLAEAD 64 >gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10] Length = 246 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] Length = 426 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + GS V+A+D D + QE ++ + Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQRLQLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|313114641|ref|ZP_07800148.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii KLE1255] gi|310623044|gb|EFQ06492.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii KLE1255] Length = 288 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 41 LDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94 +DAT G GG + C V+ D A++ ++ + ++ L + + Sbjct: 125 IDATCGNGGDTAFLCGITAPEGKVVGFDVQEAAIASTRKHLEQLGVPAARYELHCQSHAD 184 Query: 95 LQDYVPDKGVDGVVFDLGV 113 L V D V+F+ G Sbjct: 185 LLQVVQPGTADAVMFNFGW 203 >gi|297616627|ref|YP_003701786.1| rRNA methylase [Syntrophothermus lipocalidus DSM 12680] gi|297144464|gb|ADI01221.1| putative rRNA methylase [Syntrophothermus lipocalidus DSM 12680] Length = 193 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 VL+ V+ PG ++DAT G G + ++ V+A+D P AV + ++ Sbjct: 15 VLIHTVVE-----PGDFVVDATCGNGKDTVFLARLVGEKGKVLAIDVQPLAVERTKSLLQ 69 Query: 80 DY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +L + S ++ Y+ + V +F+LG Sbjct: 70 KEGLGSRVTLVRDDHSLIRHYLRE-PVKAAMFNLGY 104 >gi|312863858|ref|ZP_07724096.1| putative rRNA methylase [Streptococcus vestibularis F0396] gi|311101394|gb|EFQ59599.1| putative rRNA methylase [Streptococcus vestibularis F0396] Length = 182 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ V +DAT G G + + V A D A+ ++ + D + + Sbjct: 13 LAEVLD-----DESVAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLEIE 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + + +F+LG Sbjct: 68 NAQLILDGHENLDRYVTEPIRAAIFNLGY 96 >gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1] gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1] Length = 247 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 24 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 83 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 84 VAFDYSKKMIELAKRRQSQYAKQIEFC 110 >gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] Length = 243 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|238027991|ref|YP_002912222.1| hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1] gi|237877185|gb|ACR29518.1| Hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1] Length = 186 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 APG +LD G G ++R F G V+ALDRDP A++ Sbjct: 16 VAPGGAVLDVAAGQGRHARWFASRGHPVLALDRDPAALA 54 >gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] Length = 441 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 +++I+ V++++ I L+ PG+ +LD G G ++ + G V+ ++ D Sbjct: 274 NASINQ-------VMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDA 326 Query: 70 AVSCGQETMR 79 V G+E Sbjct: 327 MVERGRENAA 336 >gi|70726161|ref|YP_253075.1| hypothetical protein SH1160 [Staphylococcus haemolyticus JCSC1435] gi|68446885|dbj|BAE04469.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 186 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 +++DAT G G + + +V D A+ E ++ + Sbjct: 18 IKQDSIVIDATCGNGNDTLFLAQQVSNGHVFGFDIQDTAIQSTFEKVKAFNNVTLIQDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + D +D +F+LG Sbjct: 78 ENIKKHIDIQFKGQIDAAIFNLGY 101 >gi|77405777|ref|ZP_00782862.1| conserved hypothetical protein [Streptococcus agalactiae H36B] gi|77175634|gb|EAO78418.1| conserved hypothetical protein [Streptococcus agalactiae H36B] Length = 188 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +VI + LDAT G G + K V A D A++ + + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + + +F+LG Sbjct: 68 NAELILDGHENLEQYVHTPLREAIFNLGY 96 >gi|210617941|ref|ZP_03291827.1| hypothetical protein CLONEX_04059 [Clostridium nexile DSM 1787] gi|210149080|gb|EEA80089.1| hypothetical protein CLONEX_04059 [Clostridium nexile DSM 1787] Length = 207 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 18/105 (17%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 HH + +HV G + +DAT G G + C++ V+A D A Sbjct: 14 HHFMENHV-------------KEGDLCIDATAGNGNDTLFLCELVGECGRVLAFDIQKEA 60 Query: 71 VSCGQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 V ++ + +++ +F + +++Q Y ++ VD +VF+ G Sbjct: 61 VENTKKRILEHQMEKRADVFLESHAKMQKYAKEETVDCIVFNFGY 105 >gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] Length = 444 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + +NV+A+D D ++ E + + Sbjct: 253 SVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLERLNLEA 312 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +++ + D ++ D S+ + + Sbjct: 313 KVICGDARHPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 354 >gi|329769326|ref|ZP_08260742.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325] gi|328839129|gb|EGF88714.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325] Length = 189 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG-----QET 77 LL++VI +++DAT G G + K + V A D A + + Sbjct: 11 LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVFAFDVQNQATTNTNDLLEKNN 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + D E F + ++ + VVF+LG Sbjct: 66 LADKCEVILDSHENFDK----YIEENIQAVVFNLGY 97 >gi|153004217|ref|YP_001378542.1| type 11 methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152027790|gb|ABS25558.1| Methyltransferase type 11 [Anaeromyxobacter sp. Fw109-5] Length = 217 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Query: 26 EKVIALLNPAPGKVILDATFGAG-GYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD 80 ++V++ L PG V DA GAG GY V A+D D ++ ++ R+ Sbjct: 49 DEVVSALGLRPGDVACDA--GAGPGYFAIRLARAVGPTGRVHAIDVDARMIALLEQRARE 106 Query: 81 YK 82 Sbjct: 107 AG 108 >gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489] gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489] Length = 141 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 255 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium thermophilum] Length = 255 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|300814939|ref|ZP_07095167.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510909|gb|EFK38181.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 169 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Query: 27 KVIALL--NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY 81 +++ + N GK +DAT G G + K V A D +++ +E ++ Sbjct: 9 EIVDKILKNDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQSINYCKEKFKNI 68 Query: 82 KE--QFSLFQATFSQLQDYVPDKGVDGVV 108 + L+++ G + Sbjct: 69 SNLEILKISHEFIDILENFDLAIYNLGYL 97 >gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC 29799] gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC 29799] Length = 255 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|15895826|ref|NP_349175.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15025588|gb|AAK80515.1|AE007754_13 Possible rRNA methylase (SAM-dependent methyltransferase superfamily), YTQB B.subtilis [Clostridium acetobutylicum ATCC 824] gi|325509978|gb|ADZ21614.1| putative rRNA methylase (SAM-dependent methyltransferase superfamily) [Clostridium acetobutylicum EA 2018] Length = 188 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 6/84 (7%) Query: 35 APGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYKE--QFSLFQ 89 PG +D T G G + K V A D A+ + + L + Sbjct: 20 KPGDTAVDCTAGNGNDTDFLCEIVKDKGRVYAFDIQEKALLSTKRKLEASGNIKIVKLIK 79 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 L Y+ + + VF+LG Sbjct: 80 DGHENLDKYIRE-NIKAAVFNLGY 102 >gi|284802054|ref|YP_003413919.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578] gi|284995196|ref|YP_003416964.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923] gi|284057616|gb|ADB68557.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578] gi|284060663|gb|ADB71602.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923] Length = 191 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ +++ Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y V +F+LG Sbjct: 77 VCASHARIPEYTSK-PVRAAIFNLGY 101 >gi|255027475|ref|ZP_05299461.1| hypothetical protein LmonocytFSL_16008 [Listeria monocytogenes FSL J2-003] Length = 115 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ +++ Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y V +F+LG Sbjct: 77 VCASHARIPEYTSK-PVRAAIFNLGY 101 >gi|224499244|ref|ZP_03667593.1| hypothetical protein LmonF1_05937 [Listeria monocytogenes Finland 1988] Length = 175 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ +++ Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y V +F+LG Sbjct: 77 VCASHARIPEYTSK-PVRAAIFNLGY 101 >gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp. laumondii TTO1] gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 429 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 26 EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 ++ + LL P G+ ILD A GG + ++ V+A+D D + +E ++ Sbjct: 236 QECVELLKPINGEKILD--LCAAPGGKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRL 293 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ + + ++ D ++ D S+ + + Sbjct: 294 NCHATVKTGDGRHPEHWAENQQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii M21/2] gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum DSM 5476] gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758] gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM 15176] gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1] gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str. 28L] gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT 12067] gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon 107 str. F0167] gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida] gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183] gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens] gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii M21/2] gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum DSM 5476] gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758] gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM 15176] gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str. 28L] gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1] gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum 70/3] gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum V10Sc8a] gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Clostridium cf. saccharolyticum K10] gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Faecalibacterium prausnitzii L2-6] gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis [butyrate-producing bacterium SM4/1] gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT 12067] gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon 107 str. F0167] Length = 255 Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|16800839|ref|NP_471107.1| hypothetical protein lin1771 [Listeria innocua Clip11262] gi|16414258|emb|CAC97002.1| lin1771 [Listeria innocua Clip11262] Length = 191 Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 G ++DAT G G+ +V+ D A+ + + + + Sbjct: 18 VRSGDYVIDATCGN-GHDTLLLAELVGVNGHVLGFDIQQMAIDATKTRLENAGVASQVEL 76 Query: 90 ATFSQ-LQDYVPDKGVDGVVFDLGV 113 S L K V +F+LG Sbjct: 77 VCASHALIPEYATKPVRAAIFNLGY 101 >gi|309791546|ref|ZP_07686045.1| methyltransferase type 11 [Oscillochloris trichoides DG6] gi|308226406|gb|EFO80135.1| methyltransferase type 11 [Oscillochloris trichoides DG6] Length = 259 Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 29/84 (34%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L+ + ILD G G +S + G VI LD P ++ + + + Q Sbjct: 38 QALSLRGVETILDLACGGGRHSIELAQRGLTVIGLDASPRVLAHARSRASELDLNATFVQ 97 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 L D + + LG Sbjct: 98 GDMRHLTDVGRFDTILIMNSSLGF 121 >gi|218232477|ref|YP_002369548.1| hypothetical protein BCB4264_A4862 [Bacillus cereus B4264] gi|218160434|gb|ACK60426.1| conserved hypothetical protein [Bacillus cereus B4264] Length = 190 Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ---- 84 G +DAT G G+ F V D A+ +++ K Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 75 Query: 85 -FSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 T + V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|167628430|ref|YP_001678929.1| sam-dependent methyltransferase, putative [Heliobacterium modesticaldum Ice1] gi|167591170|gb|ABZ82918.1| sam-dependent methyltransferase, putative [Heliobacterium modesticaldum Ice1] Length = 243 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM 78 L +V+ PG +DAT G G+ F G ++ A D A+ + Sbjct: 15 LAEVLE-----PGDFAIDATAGN-GHDTLFLARQVLPGGDLWAFDIQEAAIDATARRL 66 >gi|73662312|ref|YP_301093.1| hypothetical protein SSP1003 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494827|dbj|BAE18148.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 186 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 36 PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 +++DAT G G + + NV A D A+ Q ++ Q + + Sbjct: 20 DDSIVIDATCGNGNDTHFLAQQVPNGNVYAFDIQDEAIKQTQ-LKIHDFNNVTIVQDSHA 78 Query: 94 QLQDYVPDKG---VDGVVFDLGV 113 +Q Y+P+ +D +F+LG Sbjct: 79 NIQSYIPNYQQGKIDAAIFNLGY 101 >gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 255 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|229152949|ref|ZP_04281131.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550] gi|228630562|gb|EEK87209.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550] Length = 177 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ K E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 62 Query: 87 LFQATFSQLQDY---VPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L V G +F+LG I + L M+ Sbjct: 63 LVHDSHDTLLSILPGDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLDVMAPE 121 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 122 GIIVLVIYHGHPEGRVERDAVLKFAEE 148 >gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium] gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium] gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium] Length = 184 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 ++ + +A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EENAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|172058288|ref|YP_001814748.1| putative rRNA methylase [Exiguobacterium sibiricum 255-15] gi|171990809|gb|ACB61731.1| putative rRNA methylase [Exiguobacterium sibiricum 255-15] Length = 196 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81 ++++ + G ++D T G G+ F VIA D A+ ++ Sbjct: 11 KELLESV-IHEGDCVVDMTAGN-GHDTHFLAEQVGPSGRVIAFDVQEQAIEETTRRLQAA 68 Query: 82 KEQFSLFQATFSQLQ 96 + S + Sbjct: 69 HVFDWVDLYHESHIH 83 >gi|167462258|ref|ZP_02327347.1| conserved protein YtqB [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383956|ref|ZP_08057686.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151433|gb|EFX44620.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 196 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 10/91 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ----- 84 PG+ ++DAT G G + + V D A+ ++ + Sbjct: 17 KVQPGESVIDATAGNGVDTLFLASLVGPSGKVYGFDIQKEAIRHTRDRLAQELPSSALYV 76 Query: 85 --FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +F+LG Sbjct: 77 TLIQDSHHRLTDYLPEQEQGKIAAAMFNLGY 107 >gi|315282619|ref|ZP_07870989.1| methylase protein [Listeria marthii FSL S4-120] gi|313613730|gb|EFR87504.1| methylase protein [Listeria marthii FSL S4-120] Length = 192 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ + + Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLENAGASSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y V +F+LG Sbjct: 77 VCASHARIPEYTSK-PVRAAIFNLGY 101 >gi|46907893|ref|YP_014282.1| hypothetical protein LMOf2365_1686 [Listeria monocytogenes serotype 4b str. F2365] gi|46881162|gb|AAT04459.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] Length = 192 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDETKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|16803702|ref|NP_465187.1| hypothetical protein lmo1662 [Listeria monocytogenes EGD-e] gi|224503672|ref|ZP_03671979.1| hypothetical protein LmonFR_14400 [Listeria monocytogenes FSL R2-561] gi|16411098|emb|CAC99740.1| lmo1662 [Listeria monocytogenes EGD-e] Length = 191 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ + + Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y V +F+LG Sbjct: 77 VCASHARIPEYTSK-PVRAAIFNLGY 101 >gi|47565176|ref|ZP_00236219.1| SAM-dependent methyltransferase [Bacillus cereus G9241] gi|47557962|gb|EAL16287.1| SAM-dependent methyltransferase [Bacillus cereus G9241] Length = 190 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLDVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|167618631|ref|ZP_02387262.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis Bt4] Length = 300 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + NV +D DP AV ++ + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGNVTGIDIDPQAVEAARQNSEHNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|144900150|emb|CAM77014.1| SAM-dependent methyltransferases [Magnetospirillum gryphiswaldense MSR-1] Length = 176 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 18/36 (50%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 APG +LD G G ++R G V ALDRD Sbjct: 21 IAPGGAVLDLASGGGRHARLLLDRGHAVTALDRDIT 56 >gi|196250012|ref|ZP_03148707.1| putative rRNA methylase [Geobacillus sp. G11MC16] gi|196210526|gb|EDY05290.1| putative rRNA methylase [Geobacillus sp. G11MC16] Length = 190 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LLE+ + G + +DAT G G+ + ++ +V D P A++ + Sbjct: 13 LLERAVT-----EGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVF 109 + ++ +LFQ + S+L +P + Sbjct: 67 EQGLHDRVTLFQQSHSELLTALPSDVYGRIAG 98 >gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting protein, putative [Trypanosoma cruzi] Length = 250 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +LD G GG + ++ V+A+D DP A+ ++ + Y ++ S + F L+ Sbjct: 63 CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122 Query: 97 DYVPDKGVDGVV 108 + Sbjct: 123 LDNMEFDAVHCS 134 >gi|326202114|ref|ZP_08191984.1| rRNA methylase [Clostridium papyrosolvens DSM 2782] gi|325987909|gb|EGD48735.1| rRNA methylase [Clostridium papyrosolvens DSM 2782] Length = 188 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 9/94 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81 ++++ + G ++DAT G G+ F G V + D A++ + + Sbjct: 12 HEIVSRVVCN-GDTVVDATAGN-GHDTVFLARLVGTGGQVYSFDIQESALNTTKNRLESE 69 Query: 82 K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +L + +K + +F+LG Sbjct: 70 NLLSRVNLIHDGHQNMMK-HVNKPIKAAMFNLGY 102 >gi|138896384|ref|YP_001126837.1| hypothetical protein GTNG_2747 [Geobacillus thermodenitrificans NG80-2] gi|134267897|gb|ABO68092.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 191 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LLE+ + G + +DAT G G+ + ++ +V D P A++ + Sbjct: 13 LLERAVT-----EGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVF 109 + ++ +LFQ + S+L +P + Sbjct: 67 EQGLLDRVTLFQQSHSELLTALPSDVYGRIGG 98 >gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT) [Trypanosoma gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative [Trypanosoma cruzi] Length = 200 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +LD G GG + ++ V+A+D DP A+ ++ + Y ++ S + F L+ Sbjct: 63 CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +D + FD S + +R Sbjct: 123 -------LDNMEFDALHCSPPWGGPLYAAAPSFDMENSLR 155 >gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT) [Trypanosoma gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative [Trypanosoma cruzi] Length = 250 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +LD G GG + ++ V+A+D DP A+ ++ + Y ++ S + F L+ Sbjct: 63 CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +D + FD S + +R Sbjct: 123 -------LDNMEFDALHCSPPWGGPLYAAAPSFDMENSLR 155 >gi|225458633|ref|XP_002282801.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 780 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +I+D G GG + F + +VIA+D DP + Q Y Sbjct: 613 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYG 657 >gi|319637816|ref|ZP_07992582.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102] gi|317400971|gb|EFV81626.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102] Length = 189 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL + + G LDAT G G+ V A D A++ Q ++ Sbjct: 13 LLRQAL-----KAGGRALDATAGN-GHDTLLLAQLVGETGKVWAFDVQSKALAQTQGRLK 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L L Y+ + +D VF+ G Sbjct: 67 ENGVDGRVALIHDGHENLSSYIDE-PLDAAVFNFGW 101 >gi|227500586|ref|ZP_03930635.1| rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227217291|gb|EEI82633.1| rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 181 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKV--ILDATFGAGGY-SRSFCKMGS--NVIALDRDPFAVSCGQETM 78 L+++++ + +D T G G+ S + +IA D A + Sbjct: 8 LVKEIL----IRKKNINLAVDMTAGN-GHDSAFILDVLGAKKLIAFDIQEEARENTLNLL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 FS + + + +Y+ + +D V++LG Sbjct: 63 GPRDN-FSFILDSHAHIDNYIKE-KIDLAVYNLGY 95 >gi|168029694|ref|XP_001767360.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681424|gb|EDQ67851.1| predicted protein [Physcomitrella patens subsp. patens] Length = 225 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 2/133 (1%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 G +I+DA G GG + F G +VIA+D DP + + Y + Sbjct: 48 SGGLIVDAFTGVGGNAIQFALRGDHVIAIDIDPLKIEYARHNAAIYG-VVDHIEFIVGDF 106 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKD 155 P+ D + + F ++ + N A Sbjct: 107 FKIAPNLKADSIFLSPPWGGPSYSDVE-KFDLHTMIQPLDGFKLFQVAQAVAPNMALFLP 165 Query: 156 LTRILGILGEEKQ 168 L L E Sbjct: 166 RNVDLDQLAELSW 178 >gi|237748134|ref|ZP_04578614.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379496|gb|EEO29587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 250 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 37/84 (44%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + E V+ LL+P PG+ ILD G G + KMG V+A+D + AV ++ D + Sbjct: 23 MGEPVLKLLDPKPGERILDMGCGLGVLAEEMVKMGCEVVAIDVNSQAVEATRQRNVDARL 82 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 + + + + + Sbjct: 83 MNAEAMTFRDEFDAVFSNASLHWM 106 >gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] Length = 426 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + + ++ + Sbjct: 235 SINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQRLNLKA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + QD+ + D ++ D S+ + + Sbjct: 295 KVICGDARNPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|302142307|emb|CBI19510.3| unnamed protein product [Vitis vinifera] Length = 683 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +I+D G GG + F + +VIA+D DP + Q Y Sbjct: 516 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYG 560 >gi|167772608|ref|ZP_02444661.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM 17241] gi|167665086|gb|EDS09216.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM 17241] Length = 190 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG +DAT G G+ +F +V+A D AV E + Sbjct: 20 VKPGDFCIDATAGR-GHDTAFLCSLVGGSGHVLAFDIQQEAVDSTTELLHTRGFAGIGRA 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + Y + V + F+ G Sbjct: 79 VLDSHANMAAYAAPESVSCITFNFGW 104 >gi|171915273|ref|ZP_02930743.1| YtqB [Verrucomicrobium spinosum DSM 4136] Length = 206 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 30 ALLNPA--PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKE 83 A+L P PG +++DAT G G+ F V A D A+ + +R+ Sbjct: 21 AILEPRLLPGDLVVDATAGN-GHDTLFLAQRVLPEGQVFAFDIQADAIQQTEIRLREAGV 79 Query: 84 QFSLF------QATFSQLQDYVPDKGVDGVVFDLGV 113 S T S + + +F+LG Sbjct: 80 DMSRITLHVAGHETLSAALPTGVHQRLRLCMFNLGY 115 >gi|206560530|ref|YP_002231295.1| putative methyltransferase [Burkholderia cenocepacia J2315] gi|198036572|emb|CAR52469.1| putative methyltransferase [Burkholderia cenocepacia J2315] Length = 200 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 G +LD G G ++R F G V+ALDRDP A++ + Sbjct: 32 GGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAALRAI 72 >gi|259046845|ref|ZP_05737246.1| rRNA methylase [Granulicatella adiacens ATCC 49175] gi|259036468|gb|EEW37723.1| rRNA methylase [Granulicatella adiacens ATCC 49175] Length = 189 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 + +DAT G G+ F S +++ D A+ ++ ++ + + + Sbjct: 21 ENGLFIDATAGN-GHDTLFLAQHIDSTSKILSFDIQETAILQTRQLLQKHDLAPKVTCIL 79 Query: 90 ATFSQLQDY-VPDKGVDGVVFDLGV 113 + + + +Y D+ V +F+LG Sbjct: 80 DSHANISNYLEQDERVRLAIFNLGY 104 >gi|290579949|ref|YP_003484341.1| hypothetical protein SmuNN2025_0423 [Streptococcus mutans NN2025] gi|254996848|dbj|BAH87449.1| hypothetical protein [Streptococcus mutans NN2025] Length = 181 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ + +DAT G G + + V A D A+ +E + + Sbjct: 13 LSQVLD-----KNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLENLGFN 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 Q D D + +F+LG Sbjct: 68 NVQLILDGHQTIDKYVDGPIRAAIFNLGY 96 >gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1] gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1] Length = 255 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + +A+ + H V+ KV LL+P P ILD G G YS + G+++ Sbjct: 32 EKNAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|253699523|ref|YP_003020712.1| rRNA methylase [Geobacter sp. M21] gi|251774373|gb|ACT16954.1| putative rRNA methylase [Geobacter sp. M21] Length = 195 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 PG ++LDAT G G + ++ G V A D P A++ + + Sbjct: 24 PGDLVLDATCGNGFDTLLLAELTGEGGEVWAFDVQPRAIAATRALLEREG 73 >gi|300766053|ref|ZP_07076022.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] gi|300513255|gb|EFK40333.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] Length = 192 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 PG +DAT G G+ +V+ D AV + + + + Sbjct: 18 VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQMEL 76 Query: 90 ATFSQLQ-DYVPDKGVDGVVFDLGV 113 S + + V +F+LG Sbjct: 77 VCASHARIPAYTSRPVRAAIFNLGY 101 >gi|299535356|ref|ZP_07048678.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1] gi|298729117|gb|EFI69670.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1] Length = 191 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFS-- 86 N G ++DAT G G+ F V A D AV + D+ + Sbjct: 17 NIEEGDTVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLLRLLDHGLEHRAL 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++ +V V +F+LG Sbjct: 76 VLNKGHEEVTQFVHK-PVTAAIFNLGY 101 >gi|30022820|ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579] gi|29898379|gb|AAP11652.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579] Length = 190 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ---- 84 G +DAT G G+ F V D A+ +++ + Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 85 -FSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 T + V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|326434167|gb|EGD79737.1| hypothetical protein PTSG_10720 [Salpingoeca sp. ATCC 50818] Length = 183 Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGS-NVIA 63 ++ ++A H H P L +KV+ N G LD T GAG + R K G+ N+I+ Sbjct: 103 ARSKNAAPVH----HFPALYKKVVKGFNQTFRGNTHLDMTLGAGNHVRHVFKAGAQNIIS 158 Query: 64 LDRDPFAVSCGQ 75 D D + Q Sbjct: 159 ADGDDSVIDTAQ 170 >gi|251795313|ref|YP_003010044.1| rRNA methylase [Paenibacillus sp. JDR-2] gi|247542939|gb|ACS99957.1| putative rRNA methylase [Paenibacillus sp. JDR-2] Length = 192 Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84 PG +++DAT G G + + V A D A+ E +R +E+ Sbjct: 18 VQPGDIVIDATAGGGVDTLKLAELVGARGTVHAFDIQQDALDRTLERLRPLEER 71 >gi|257076787|ref|ZP_05571148.1| methyltransferase [Ferroplasma acidarmanus fer1] Length = 177 Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQ- 84 ++ ++ P VI+D G G YS+ F V A++R+P + Q + + K Sbjct: 19 IVEKMDLKPDDVIIDMGAGDGFYSKLFADKLKNGKVYAIERNPDVLPHLQRNLMEMKNFE 78 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 ++ + V D+ ID R Sbjct: 79 VVNENMCHVDIKGF-NKIFFSTVFHDIECREDIIDFMIR 116 >gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1] gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus kodakarensis KOD1] Length = 450 Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L P PG+ ++D GG + + + A D D + +E ++ E + Sbjct: 246 LAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSARIKRMKEVLKRTGVEIAEV 305 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +A + + ++ D V+ D +S + ++ Sbjct: 306 IKADGRNAPELLGEEIADRVLLDAPCTSDGTIAKNPELRWR 346 >gi|304314357|ref|YP_003849504.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter marburgensis str. Marburg] gi|302587816|gb|ADL58191.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter marburgensis str. Marburg] Length = 188 Score = 40.4 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +P G +D G GG + + V A+D+ P A+S + ++ + Sbjct: 30 DPGKGDTAVDVGCGTGGVTLELSRRAGRVYAIDKSPDAISTTEMNLKKHG 79 >gi|78043668|ref|YP_360801.1| hypothetical protein CHY_1982 [Carboxydothermus hydrogenoformans Z-2901] gi|77995783|gb|ABB14682.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 200 Score = 40.4 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 8/61 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 L++V+ G V +DAT G G + V A D A+ ++ +++ Sbjct: 15 LQEVVQA-----GDVAVDATAGNGNDTLFLAHRVGENGKVYAFDIQEQALKITEQKLKEA 69 Query: 82 K 82 Sbjct: 70 G 70 >gi|154253151|ref|YP_001413975.1| type 11 methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157101|gb|ABS64318.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1] Length = 219 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 14/102 (13%) Query: 21 VPVLLEK------VIALLNPAPGKVILDATFGAG-GYSRSFCKM----GSNVIALDRDPF 69 + V+ + V+ L G+ ++D GAG G S++ G +I +D DP Sbjct: 23 IAVMTREKRWRPLVVNALALQTGETVVD--IGAGTG-SQAILLKQAVPGIRIIGIDPDPD 79 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 ++ + + Q + + D VV L Sbjct: 80 VLAIARAKAEAAAVEVDWRQGFGDEADQIAGSEIADAVVSSL 121 >gi|225011697|ref|ZP_03702135.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A] gi|225004200|gb|EEG42172.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A] Length = 403 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V +NP PG I+DA GAGG + + + N+IA+D Sbjct: 216 VSHWVNPKPGMKIIDACAGAGGKTLHMAALMENKGNIIAID 256 >gi|315303476|ref|ZP_07874063.1| methylase protein [Listeria ivanovii FSL F6-596] gi|313628158|gb|EFR96704.1| methylase protein [Listeria ivanovii FSL F6-596] Length = 191 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG ++DAT G G+ V+ D A+ + + Q +L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGYVLGFDIQQVAIDATRTRLENAAVSSQVNL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y + V +F+LG Sbjct: 77 ICASHATIPEYATN-PVRAAIFNLGY 101 >gi|322516162|ref|ZP_08069095.1| rRNA methylase [Streptococcus vestibularis ATCC 49124] gi|322125338|gb|EFX96693.1| rRNA methylase [Streptococcus vestibularis ATCC 49124] Length = 182 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ + +DAT G G + + + A D A+ ++ + D + + Sbjct: 13 LAEVLD-----DESIAVDATMGNGNDTAFLAGLAKKIYAFDVQEQALEKTRQRLSDLEIE 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D + + +F+LG Sbjct: 68 NAQLILDGHENLDRYVTEPIRAAIFNLGY 96 >gi|83719303|ref|YP_441708.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis E264] gi|167580522|ref|ZP_02373396.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis TXDOH] gi|123537576|sp|Q2SZE1|PRMA_BURTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|83653128|gb|ABC37191.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis E264] Length = 300 Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + NV +D DP AV ++ + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGNVTGIDIDPQAVEAARQNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|210622939|ref|ZP_03293444.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275] gi|210153905|gb|EEA84911.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275] Length = 193 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88 G V +DAT G G + V A D A+ ++ ++ +++++ L Sbjct: 22 IGEGDVCIDATMGNGYDTVFLAEIVGENGKVYAFDVQEEAIKSTEKKVKKLEFEDRVELI 81 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + +YV D + VF+LG Sbjct: 82 LDGHENISNYVKD-SIKCAVFNLGY 105 >gi|52140754|ref|YP_086075.1| SAM-dependent methyltransferase [Bacillus cereus E33L] gi|51974223|gb|AAU15773.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus cereus E33L] Length = 190 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIIGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218] Length = 426 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + G +V+A+D D + + ++ Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + D ++ D S+ + + Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] Length = 426 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + G +V+A+D D + + ++ Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + D ++ D S+ + + Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|118479881|ref|YP_897032.1| SAM-dependent methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|196043789|ref|ZP_03111026.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225866741|ref|YP_002752119.1| hypothetical protein BCA_4875 [Bacillus cereus 03BB102] gi|118419106|gb|ABK87525.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus thuringiensis str. Al Hakam] gi|196025125|gb|EDX63795.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225787347|gb|ACO27564.1| conserved hypothetical protein [Bacillus cereus 03BB102] Length = 190 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] Length = 427 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82 V+ LL+P PG+ ++D GG ++ + + + A+DRD + + Sbjct: 224 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGAS 283 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E A D V+ D+ + M + G +++S Sbjct: 284 EMVEAETADLRAWAARPEPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSM 332 >gi|18311883|ref|NP_558550.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum aerophilum str. IM2] gi|48428122|sp|Q8ZZA9|CBIT_PYRAE RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|18159297|gb|AAL62732.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT) [Pyrobaculum aerophilum str. IM2] Length = 196 Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYK 82 ++ L G ++D G G S GS V A+D+DP AV ++ + Sbjct: 32 ALSKLRLIKGGTLVDVGCGTGTISVEAALIMGEGSKVYAIDKDPLAVEITKKNAAKFG 89 >gi|228477135|ref|ZP_04061773.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126] gi|228251154|gb|EEK10325.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126] Length = 182 Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL ++ +A +DAT G G + + V A D A+ ++ + D + Sbjct: 16 VLDDESVA----------VDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLE 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + D+ + + +F+LG Sbjct: 66 IENAELILDGHENLDHYVTEPIRAAIFNLGY 96 >gi|111224401|ref|YP_715195.1| putative methyltransferase [Frankia alni ACN14a] gi|111151933|emb|CAJ63655.1| Putative methyltransferase [Frankia alni ACN14a] Length = 281 Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 PV + +++ P P V LDA G G Y+ G VI +DR P ++ + + Sbjct: 63 EPV-VREIVD---PLPVGVALDAACGTGRYAEFLAGRGHRVIGVDRSPDMLARARTRVPQ 118 Query: 81 YKEQFSLFQ 89 + Sbjct: 119 GQFLLGDLH 127 >gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis JV21] gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis JV21] Length = 368 Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L ++I ++ ++D G GG+ + +G I +D A+ Q+ ++ + Sbjct: 294 MLRRII-AMSSNEDSRVMDCFCGGGGFLQEALNLGRKFIGIDEGIEAIKLNQKWLKASEN 352 Query: 84 QFSLF 88 Sbjct: 353 HLFSH 357 >gi|322373579|ref|ZP_08048115.1| putative rRNA methylase [Streptococcus sp. C150] gi|321278621|gb|EFX55690.1| putative rRNA methylase [Streptococcus sp. C150] Length = 182 Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ G + +DAT G G + + V A D A+ + + D K + Sbjct: 13 LAQVLD-----DGSIAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTSQRLSDLKID 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NAELILDGHENLDRYVTE-PIRAAIFNLGY 96 >gi|229087300|ref|ZP_04219442.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44] gi|228696002|gb|EEL48845.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44] Length = 177 Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 7/85 (8%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ E+ Sbjct: 4 AVTEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIENSTVRLKEKGVEERTV 62 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL 111 L + L D +P++ V + Sbjct: 63 LVHDSHDTLLDVLPEEATGKVTGAI 87 >gi|296313818|ref|ZP_06863759.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768] gi|296839542|gb|EFH23480.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768] Length = 188 Score = 40.1 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTVGIRGKVWAFDVQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P+ +D VF+ G Sbjct: 79 GHENLKQYIPE-PLDAAVFNFGW 100 >gi|331087032|ref|ZP_08336107.1| hypothetical protein HMPREF0987_02410 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409482|gb|EGG88925.1| hypothetical protein HMPREF0987_02410 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 187 Score = 40.1 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 7/84 (8%) Query: 36 PGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 G + +DAT G G+ +VIA D AV + + E+ + Sbjct: 20 EGDICIDATAGN-GHDTLLLAELVGASGSVIAFDIQEQAVQETKRKIDACGYAERTEVVL 78 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y + V + F+ G Sbjct: 79 DSHVHMGAYAKENTVSCITFNFGY 102 >gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1] gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1] Length = 425 Score = 40.1 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + S V+A+D D + + ++ K Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKRLKLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ + D ++ D S+ + + Sbjct: 295 KVVCGDARTPSEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|317051158|ref|YP_004112274.1| type 11 methyltransferase [Desulfurispirillum indicum S5] gi|316946242|gb|ADU65718.1| Methyltransferase type 11 [Desulfurispirillum indicum S5] Length = 268 Score = 40.1 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 13/145 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 LL++ LN G ILD G G +SR K G V LD ++ +D Sbjct: 34 LLDE----LNLPAGSTILDIGCGTGRHSRELAKRGYRVTGLDLSSEMLANAATMAKDAGM 89 Query: 84 QFSLFQATF-SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 A S D + LG+ S + + +S + Sbjct: 90 SVQWVHADATSFSLPEQFDAAICLCEGSLGLLS------QTDDPIAQPLSILCNISRNLK 143 Query: 143 SASDVVNQANVKDLTRILGILGEEK 167 + +V R+L +E Sbjct: 144 PGARMVATV--LSAARMLRSYSDED 166 >gi|226310774|ref|YP_002770668.1| hypothetical protein BBR47_11870 [Brevibacillus brevis NBRC 100599] gi|226093722|dbj|BAH42164.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 260 Score = 40.1 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 7/147 (4%) Query: 31 LLNPAPGKVILD-ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LNP+P V LD AT GG+ +++ +V A D ++ + ++ + Sbjct: 40 WLNPSPEWVFLDVAT--GGGHLTKAIAPHVGHVFATDLTQPMLAAARNHLKSHTSNVFYV 97 Query: 89 QATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145 A L + G + R L ++ Sbjct: 98 VADAEALPFLSESFDAVGCRIAAHHFPNPESFVKEVARVLKPGGKFVLIDNIAAEDEKLD 157 Query: 146 DVVNQANVKDLTRILGILGEEKQASRI 172 VN + + I Sbjct: 158 QFVNTLEKLRDHSHVRSYSRSEWVRWI 184 >gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 40.1 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 350 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 + + S L +D ++ D + + + ++ + + Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 410 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 ++ ++ + ++ + + +A Sbjct: 411 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 443 >gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4] gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4] Length = 463 Score = 40.1 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 364 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 + + S L +D ++ D + + + ++ + + Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 424 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 ++ ++ + ++ + + +A Sbjct: 425 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 457 >gi|261379857|ref|ZP_05984430.1| putative rRNA methylase [Neisseria subflava NJ9703] gi|284797554|gb|EFC52901.1| putative rRNA methylase [Neisseria subflava NJ9703] Length = 189 Score = 40.1 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++ + G LDAT G G+ V A D A++ Q ++ Sbjct: 13 LLQQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQLKALAQTQGRLK 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L L Y+ + +D VF+ G Sbjct: 67 ENGVDGRVALIHDGHENLLSYIDE-PLDAAVFNFGW 101 >gi|254824274|ref|ZP_05229275.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852289|ref|ZP_05241637.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|255521499|ref|ZP_05388736.1| hypothetical protein LmonocFSL_09805 [Listeria monocytogenes FSL J1-175] gi|258605595|gb|EEW18203.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293593509|gb|EFG01270.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] Length = 192 Score = 40.1 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG +DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] Length = 448 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82 V+ LL+P PG+ ++D GG ++ + + + A+DRD + + Sbjct: 245 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGAS 304 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E A D V+ D+ + M + G +++S Sbjct: 305 EMVEAETADLRAWAGRPEPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSM 353 >gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] Length = 426 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] Length = 426 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae LMA3894-4] Length = 426 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385] gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385] Length = 434 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344 >gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39] gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51] gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226] gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51] gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39] gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226] Length = 434 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344 >gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3] gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3] Length = 434 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344 >gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587] gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2] gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587] gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2] Length = 434 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344 >gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] Length = 426 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|269127860|ref|YP_003301230.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183] gi|268312818|gb|ACY99192.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183] Length = 255 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 PG +LD GAG ++ + G++V+A D D ++ ++ R + Sbjct: 7 ERFPITPGDHVLDMGCGAGRHAFELYRRGAHVVAFDLDADELAGVEKMFRAMR 59 >gi|295982627|pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From Streptococcus Thermophilus To 1.95a gi|295982628|pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From Streptococcus Thermophilus To 1.95a Length = 185 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ +++DAT G G + + V A D A+ + + D + Sbjct: 16 LAEVLD-----DESIVVDATXGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + D+ + + +F+LG Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLGY 99 >gi|326942536|gb|AEA18432.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 190 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLTFAEE 161 >gi|228941931|ref|ZP_04104475.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228961019|ref|ZP_04122647.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974862|ref|ZP_04135424.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981455|ref|ZP_04141753.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407] gi|228778280|gb|EEM26549.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407] gi|228784866|gb|EEM32883.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798652|gb|EEM45637.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228817764|gb|EEM63845.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 177 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 121 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLTFAEE 148 >gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33] gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10] gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33] gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10] Length = 434 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344 >gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] Length = 426 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] Length = 426 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80] gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52] gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395] gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457] gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2] gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80] gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52] gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457] gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395] gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2] gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395] gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] Length = 434 Score = 40.1 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + + D ++ D S+ + + Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 344 >gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina 98AG31] Length = 218 Score = 40.1 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA GAGG + F VIA+D DP ++ + Y ++ A F + Sbjct: 41 VIVDAFCGAGGNAIQFASTSDRVIAIDIDPNKIALAEHNATVYGVEDKIEFICADFIEWI 100 Query: 97 DYVPDKGVDGVVFDLGVS 114 VD + Sbjct: 101 QNQEKGSVDVIFLSPPWG 118 >gi|261400430|ref|ZP_05986555.1| putative rRNA methylase [Neisseria lactamica ATCC 23970] gi|269209877|gb|EEZ76332.1| putative rRNA methylase [Neisseria lactamica ATCC 23970] Length = 188 Score = 40.1 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +V+ G LD T G G+ F V A D P A++ + ++ Sbjct: 13 LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQ 66 Query: 80 DYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L+ YV + ++ +F+ G Sbjct: 67 EAGYSNVRLILDGHENLKQYVSE-PLNAAIFNFGW 100 >gi|330752038|emb|CBL80550.1| putative methyltransferase [uncultured Flavobacteria bacterium] Length = 243 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 + L +PG ILD G G +S+ ++G +V +D P +++ ++ + F Sbjct: 39 SFLKLSPGSTILDLACGKGRHSKYLNELGYHVTGIDLSPQSITYAKKF--ENDNLFFDEH 96 Query: 90 ATFSQLQDYVPDKGVDGVV 108 S+L D + Sbjct: 97 DM-SKLYPKQFDAVFNLFT 114 >gi|296120812|ref|YP_003628590.1| rRNA methylase [Planctomyces limnophilus DSM 3776] gi|296013152|gb|ADG66391.1| putative rRNA methylase [Planctomyces limnophilus DSM 3776] Length = 196 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 16/105 (15%) Query: 22 PV----LLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVS 72 PV L +++ L PG +DAT G G+ F V A D A++ Sbjct: 3 PVPLTTLAHELLRQHL--QPGDFAIDATAGN-GHDMEFLARTVGPAGLVWAFDVQEQAIA 59 Query: 73 CGQETMRDYK-EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113 + L Q + SQ++ +P+K + V+ +LG Sbjct: 60 ASEYRRSQAGVNWVQLQQVSHSQMKAVIPEKYHGKLAAVMLNLGY 104 >gi|228988006|ref|ZP_04148110.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771723|gb|EEM20185.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 177 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 121 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLKFAEE 148 >gi|229141487|ref|ZP_04270023.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26] gi|229199766|ref|ZP_04326385.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293] gi|228583706|gb|EEK41905.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293] gi|228641972|gb|EEK98267.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26] Length = 177 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 121 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLKFAEE 148 >gi|257387329|ref|YP_003177102.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286] gi|257169636|gb|ACV47395.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286] Length = 206 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++ IA L+ P +LD G G + + +V LD+ A + + K Sbjct: 33 MRDEAIAKLDIEPDDHVLDVGCGTGFATEGLLEATEHVYGLDQ--SAHQLEKAYAKFGKR 90 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 F ++ + D FD+ SS I+ Sbjct: 91 GPVAFHRGDAERLPFQDD------TFDVVWSSGSIEYWPN 124 >gi|196032979|ref|ZP_03100392.1| conserved hypothetical protein [Bacillus cereus W] gi|195994408|gb|EDX58363.1| conserved hypothetical protein [Bacillus cereus W] Length = 190 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|206977282|ref|ZP_03238179.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217962239|ref|YP_002340809.1| hypothetical protein BCAH187_A4886 [Bacillus cereus AH187] gi|222098222|ref|YP_002532279.1| sam-dependent methyltransferase, mraw methylase family [Bacillus cereus Q1] gi|206744433|gb|EDZ55843.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217065440|gb|ACJ79690.1| conserved hypothetical protein [Bacillus cereus AH187] gi|221242280|gb|ACM14990.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus cereus Q1] Length = 190 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|163854093|ref|YP_001642136.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium extorquens PA1] gi|218533038|ref|YP_002423854.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium chloromethanicum CM4] gi|163665698|gb|ABY33065.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium extorquens PA1] gi|218525341|gb|ACK85926.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium chloromethanicum CM4] Length = 216 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79 P+LL ++I L PG LD G G GY + + V+AL+ DP + +E + Sbjct: 68 PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIGAARERLG 125 Query: 80 DYKEQFS 86 D Sbjct: 126 DTVNLVQ 132 >gi|49476826|ref|YP_038794.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|296505217|ref|YP_003666917.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171] gi|49328382|gb|AAT59028.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|296326269|gb|ADH09197.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171] Length = 190 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|324328648|gb|ADY23908.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 190 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIESSTTRLKEKELFERTI 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|228923508|ref|ZP_04086790.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836146|gb|EEM81505.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 177 Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 63 LVHDSHDTLLSVLPEGAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMTPQ 121 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 122 GIIVLVIYHGHPEGQVERDAVLKFAEE 148 >gi|301056259|ref|YP_003794470.1| MraW methylase family protein [Bacillus anthracis CI] gi|300378428|gb|ADK07332.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 40.1 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80 G +DAT G G+ F V D A+ +++ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKE 67 >gi|255065187|ref|ZP_05317042.1| putative rRNA methylase [Neisseria sicca ATCC 29256] gi|255050608|gb|EET46072.1| putative rRNA methylase [Neisseria sicca ATCC 29256] Length = 189 Score = 40.1 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80 LL++ + P LD T G G + + G V A D A++ + + + Sbjct: 13 LLKQAL-----KPDARALDGTAGNGNDTLMLARSVGRGGKVWAFDIQEQALANTRMRLEE 67 Query: 81 --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ L L ++ + +D VF+ G Sbjct: 68 AGMADRVELILDGHENLATHIRE-PLDAAVFNFGW 101 >gi|229916468|ref|YP_002885114.1| rRNA methylase [Exiguobacterium sp. AT1b] gi|229467897|gb|ACQ69669.1| putative rRNA methylase [Exiguobacterium sp. AT1b] Length = 190 Score = 40.1 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G+V +D T G G+ F +V A D AV+ + + + + ++ Sbjct: 18 IEEGQVAIDMTAGN-GHDTLFLANAVGETGHVYAFDIQSEAVAATKARVEESGVSNRVTV 76 Query: 88 FQATFSQLQDYVPD--KGVDGVVFDLGV 113 + +Q V + + VF+LG Sbjct: 77 IHDSHDTVQAVVEKEARPITAAVFNLGY 104 >gi|15078947|ref|NP_149698.1| 235L [Invertebrate iridescent virus 6] gi|82061647|sp|Q91FT7|235L_IIV6 RecName: Full=Putative methyltransferase 235L; Flags: Precursor gi|15042316|gb|AAK82096.1|AF303741_235 235L [Invertebrate iridescent virus 6] Length = 265 Score = 40.1 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 3/98 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + L A K ++D G G + +VI +D+D + +ET + + Sbjct: 38 LDQLQIASNKTVIDIGCGNGKITNYISSLVKDGSVIGIDKDSSMIKYAKETYPNVDFKVM 97 Query: 87 LFQA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 Q + D V + + S I + Sbjct: 98 DIQNENIDKKYDIVVSFFCLPWIVNKQASFHHISNMMK 135 >gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3] gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3] Length = 449 Score = 40.1 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 10/167 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 ++ I+ T ++ + + L P PG+ ILD G G +S K+G+ VI ++ P Sbjct: 284 NAQINKT-------MVAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPE 336 Query: 70 AVSCGQETMRDYK-EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFS 126 VS +E + + S L +D ++ D + + + Sbjct: 337 MVSQARENAAANGLSNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMK 396 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 ++ + + ++ ++ + ++ + + +A Sbjct: 397 PRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 443 >gi|226364165|ref|YP_002781947.1| hypothetical protein ROP_47550 [Rhodococcus opacus B4] gi|226242654|dbj|BAH53002.1| hypothetical protein [Rhodococcus opacus B4] Length = 246 Score = 40.1 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L PG ++D GAG +S + G++VIA D++ ++ ++ E Sbjct: 7 DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELADVEKMFVAMAE 60 >gi|111021629|ref|YP_704601.1| methyltransferase [Rhodococcus jostii RHA1] gi|110821159|gb|ABG96443.1| possible methyltransferase [Rhodococcus jostii RHA1] Length = 246 Score = 40.1 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L PG ++D GAG +S + G++VIA D++ ++ ++ E Sbjct: 7 DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELADVEKMFVAMAE 60 >gi|320104694|ref|YP_004180285.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644] gi|319751976|gb|ADV63736.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644] Length = 316 Score = 39.7 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 ++++A L PG V+ D GAG ++ ++ VIA D P + Sbjct: 120 DEMLAALKIKPGMVVADVGAGAGFHTLRLARLVGPTGTVIATDVQPQMIQ 169 >gi|268315920|ref|YP_003289639.1| Fmu (Sun) domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333454|gb|ACY47251.1| Fmu (Sun) domain protein [Rhodothermus marinus DSM 4252] Length = 434 Score = 39.7 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 9/45 (20%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 LL + PG+V++D G GG + + + + A D Sbjct: 231 LLTEA------RPGQVVVDGCAGGGGKTLHLAALMEGKGRLYAFD 269 >gi|261252564|ref|ZP_05945137.1| biotin synthesis protein BioC [Vibrio orientalis CIP 102891] gi|260935955|gb|EEX91944.1| biotin synthesis protein BioC [Vibrio orientalis CIP 102891] Length = 267 Score = 39.7 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 2/81 (2%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 GK +LD G G +S K G++VI D + Q + + Q +L Sbjct: 53 GKTVLDVGCGTGYFSFELLKRGAHVICFDLSEQMLDAAQSR--CGSDHVTYQQGDAEKLP 110 Query: 97 DYVPDKGVDGVVFDLGVSSMQ 117 L Sbjct: 111 FETNSVDYVFSSLALQWCQDL 131 >gi|94310012|ref|YP_583222.1| methyltransferase type 12 [Cupriavidus metallidurans CH34] gi|93353864|gb|ABF07953.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 191 Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 PG +LD G+G +S G V+A+DRD A++ Sbjct: 22 IRPGGRVLDLACGSGRHSAWLAAQGFAVLAVDRDAEAIAA 61 >gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] Length = 244 Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 G GG +R+ + G ++A++RD + E + Q + Q+ Sbjct: 23 GPGGLTRAILRAGGRLVAVERDDRCLPALAELADAFPGQLKVIAGDAMQIDAQAEAGDGA 82 Query: 106 GVVFDLGVS 114 ++ +L + Sbjct: 83 HIIANLPYN 91 >gi|325202454|gb|ADY97908.1| putative rRNA methylase [Neisseria meningitidis M01-240149] gi|325207794|gb|ADZ03246.1| putative rRNA methylase [Neisseria meningitidis NZ-05/33] Length = 188 Score = 39.7 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPK-PLDAAIFNFGW 100 >gi|121634545|ref|YP_974790.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18] gi|120866251|emb|CAM09992.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18] gi|308388937|gb|ADO31257.1| hypothetical protein NMBB_0845 [Neisseria meningitidis alpha710] Length = 188 Score = 39.7 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPK-PLDAAIFNFGW 100 >gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 350 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 + + S L +D ++ D + + + ++ + + Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 410 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 ++ ++ + ++ + + +A Sbjct: 411 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 443 >gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7] gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7] Length = 463 Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 364 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 + + S L +D ++ D + + + ++ + + Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASL 424 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 ++ ++ + ++ + + +A Sbjct: 425 ARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMA 457 >gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14673] gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14673] Length = 240 Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + +A+ + H V+ KV LL+P P ILD G G YS + G+++ Sbjct: 17 EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 76 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 77 VAFDYSKKMIELAKRRQSQYAKQIEFC 103 >gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704] gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM 17241] gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14163] gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704] gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM 17241] gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14163] Length = 255 Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + +A+ + H V+ KV LL+P P ILD G G YS + G+++ Sbjct: 32 EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLF 88 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFC 118 >gi|194289304|ref|YP_002005211.1| hypothetical protein RALTA_A1180 [Cupriavidus taiwanensis LMG 19424] gi|193223139|emb|CAQ69144.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 195 Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 PG +LD G G ++ G V+A+DRD A++ Sbjct: 23 RPGARVLDLACGGGRHAAWLAARGHQVLAVDRDADAIA 60 >gi|197119722|ref|YP_002140149.1| rRNA methyltransferase [Geobacter bemidjiensis Bem] gi|197089082|gb|ACH40353.1| rRNA methyltransferase, putative [Geobacter bemidjiensis Bem] Length = 192 Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 PG LDAT G G + ++ G V A D P A++ + + Sbjct: 22 VRPGDRALDATCGNGFDTLLLAELAGEGGEVWAFDVQPRAIAATRALLEREG 73 >gi|297583531|ref|YP_003699311.1| putative rRNA methylase [Bacillus selenitireducens MLS10] gi|297141988|gb|ADH98745.1| putative rRNA methylase [Bacillus selenitireducens MLS10] Length = 188 Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 35 APGKVILDATFGAGGY-SRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G+ + + +V D A+ ++ E+ +L Sbjct: 19 QEGDTVVDATVGN-GHDTVYLAELVGASGSVYGFDIQKTALDATLNKLQQKGLEERVALI 77 Query: 89 QATFSQLQDY-VPDKGVDGVVFDLGV 113 QL Y +K V VF+LG Sbjct: 78 HDGHEQLGAYIPQEKTVHAAVFNLGY 103 >gi|237813872|ref|YP_002898323.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei MSHR346] gi|237503463|gb|ACQ95781.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei MSHR346] Length = 302 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + V +D DP AV + + Sbjct: 157 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 214 Query: 83 EQFSL 87 + Sbjct: 215 ADVTY 219 >gi|76812155|ref|YP_334873.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 1710b] gi|126439278|ref|YP_001060478.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 668] gi|254258318|ref|ZP_04949372.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 1710a] gi|254299321|ref|ZP_04966771.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 406e] gi|123597942|sp|Q3JNI0|PRMA_BURP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|166223401|sp|A3NDQ7|PRMA_BURP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|76581608|gb|ABA51083.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 1710b] gi|126218771|gb|ABN82277.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 668] gi|157809259|gb|EDO86429.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 406e] gi|254217007|gb|EET06391.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 1710a] Length = 300 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + V +D DP AV + + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|53726117|ref|YP_104049.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC 23344] gi|121601286|ref|YP_991774.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1] gi|124385858|ref|YP_001027267.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC 10229] gi|126450877|ref|YP_001082797.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC 10247] gi|166998585|ref|ZP_02264443.1| ribosomal protein L11 methyltransferase [Burkholderia mallei PRL-20] gi|238561259|ref|ZP_00442332.2| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8 horse 4] gi|254178904|ref|ZP_04885558.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC 10399] gi|254202768|ref|ZP_04909131.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH] gi|254208110|ref|ZP_04914460.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU] gi|60390319|sp|Q62GX2|PRMA_BURMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|166223398|sp|A3MRB1|PRMA_BURM7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|166223399|sp|A2S5P8|PRMA_BURM9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|166223400|sp|A1V0M1|PRMA_BURMS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|52429540|gb|AAU50133.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC 23344] gi|121230096|gb|ABM52614.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1] gi|124293878|gb|ABN03147.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC 10229] gi|126243747|gb|ABO06840.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC 10247] gi|147747015|gb|EDK54092.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH] gi|147752004|gb|EDK59071.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU] gi|160694818|gb|EDP84826.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC 10399] gi|238524959|gb|EEP88389.1| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8 horse 4] gi|243065269|gb|EES47455.1| ribosomal protein L11 methyltransferase [Burkholderia mallei PRL-20] Length = 300 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + V +D DP AV + + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|53720593|ref|YP_109579.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei K96243] gi|167740256|ref|ZP_02413030.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 14] gi|167817474|ref|ZP_02449154.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 91] gi|167847363|ref|ZP_02472871.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei B7210] gi|60390329|sp|Q63QN9|PRMA_BURPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|52211007|emb|CAH36995.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei K96243] Length = 300 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + V +D DP AV + + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|134280036|ref|ZP_01766747.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 305] gi|134248043|gb|EBA48126.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 305] Length = 302 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + V +D DP AV + + Sbjct: 157 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNR 214 Query: 83 EQFSL 87 + Sbjct: 215 ADVTY 219 >gi|326791105|ref|YP_004308926.1| rRNA methylase [Clostridium lentocellum DSM 5427] gi|326541869|gb|ADZ83728.1| rRNA methylase [Clostridium lentocellum DSM 5427] Length = 184 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Query: 35 APGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G + +DAT G G+ + C++ V+A D AV+ + +++ + ++ Sbjct: 18 KAGDLCIDATAGR-GHDTVFLCELVGDTGRVLAFDIQEEAVNSTKFLLKEKGLKAEVYLE 76 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + + + YV + VDG+VF+ G Sbjct: 77 SHTHMDHYVKPETVDGIVFNFGY 99 >gi|253681007|ref|ZP_04861810.1| possible rRNA methylase [Clostridium botulinum D str. 1873] gi|253562856|gb|EES92302.1| possible rRNA methylase [Clostridium botulinum D str. 1873] Length = 189 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 L ++ IA+ G + +DAT G G + ++ V + D A+ ++ + D Sbjct: 12 LAKE-IAIKKLQHGDIAVDATMGNGNDTVFLAELVGDSGTVYSFDVQKEAIDNTRKKIID 70 Query: 81 Y--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 K L + Y +K V V+F+LG Sbjct: 71 NKIKTNIQLIHDGHENIDKY-INKDVKLVMFNLGY 104 >gi|168214958|ref|ZP_02640583.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|170713598|gb|EDT25780.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] Length = 183 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENIEVILDSHENFE---T 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|78355142|ref|YP_386591.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217547|gb|ABB36896.1| methyltransferase (putative) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 195 Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 16/99 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 L+ +V+ ++DAT G G+ F V D A+ ++ Sbjct: 19 LVRQVV-----RSADTVVDATAGN-GHDTLFLAGLVGPQGRVYGFDVQAQALENTARRLQ 72 Query: 80 DYKEQ-----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + F +L + + +F+LG Sbjct: 73 RHGAERQVTLFHAGHEAAGRLLPAGTE-NLACAMFNLGY 110 >gi|217420963|ref|ZP_03452468.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 576] gi|254199088|ref|ZP_04905503.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei S13] gi|169656918|gb|EDS88315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei S13] gi|217396375|gb|EEC36392.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei 576] Length = 300 Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + +V +D DP AV + + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGHVTGIDIDPQAVEAARHNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|168207497|ref|ZP_02633502.1| conserved hypothetical protein [Clostridium perfringens E str. JGS1987] gi|170661178|gb|EDT13861.1| conserved hypothetical protein [Clostridium perfringens E str. JGS1987] Length = 183 Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 39.7 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 G GG +R+ + VIA++RD A++ E M Y + + A +++ + Sbjct: 55 GPGGLTRALLDNDARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATLGEAP 114 Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 +V +L + + L + Sbjct: 115 RRIVANLPYNISTVLLLAWLRRIDAFESLTLMFQKE 150 >gi|95930615|ref|ZP_01313349.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684] gi|95133267|gb|EAT14932.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684] Length = 264 Score = 39.7 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 12/94 (12%) Query: 1 MESKSCKTMSSAIHHTIG-------DH-VPVLLEKVIALLNPAPGKVILD-ATFGAGGYS 51 M K+ K MS + +G H V L+ ++ ++ P +LD AT GG++ Sbjct: 1 MTDKTSKEMSRDQYSQVGDAYVRSQTHAKGVDLDYLLNMVQPQKDWKVLDVAT--GGGHT 58 Query: 52 RSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQ 84 VIA+D P V ++ + D K Q Sbjct: 59 ALILAPYVQQVIAVDLTPNMVETAKKFVCDEKGQ 92 >gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] Length = 451 Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + +NV+A+D D + E + + + Sbjct: 262 EYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLERLNLKAQV 321 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +++ + D ++ D S+ + + Sbjct: 322 ICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKW 361 >gi|225465006|ref|XP_002263914.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297736150|emb|CBI24188.3| unnamed protein product [Vitis vinifera] Length = 259 Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 16/94 (17%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQ--- 84 G ++DAT G G + + KM V +D A+ + + Sbjct: 84 VQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSSLLNESVNPIEK 143 Query: 85 -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F++ + ++ + V F+LG Sbjct: 144 ELVKLFTICHSRMEEV--VPKSTTLRLVAFNLGY 175 >gi|147801353|emb|CAN63608.1| hypothetical protein VITISV_019132 [Vitis vinifera] Length = 285 Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 16/94 (17%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQ--- 84 G ++DAT G G + + KM V +D A+ + + Sbjct: 84 VQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSSLLNESVNPIEK 143 Query: 85 -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F++ + ++ + V F+LG Sbjct: 144 ELVKLFTICHSRMEEV--VPKSTTLRLVAFNLGY 175 >gi|124004979|ref|ZP_01689822.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134] gi|123989657|gb|EAY29203.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134] Length = 504 Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 14/182 (7%), Positives = 48/182 (26%), Gaps = 5/182 (2%) Query: 52 RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 + + S V +D D A+ + E + + + + + + Sbjct: 70 EAILENLSKVRGMDIDEEAIKICISDLNKLVEP-YGINFPSKNVSKFDWNIQSENTLSQI 128 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN----VKDLTRILGILGEEK 167 + + + + L + + + + L + Sbjct: 129 DKGRERFEFIVGNPPYIRIQHLSEEDRYLIQTRYEFCKSGSTDTYIAFFEYCQKKLSKNG 188 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227 I ++ + ++ K + K+ ++ ++ A+ IF + + Sbjct: 189 ICGLITPNTFFYTETGRILRSYFINERKIKQITNYKDIQLFDDATTYSAITIFDRKQNDS 248 Query: 228 LA 229 Sbjct: 249 FC 250 >gi|110800429|ref|YP_695783.1| hypothetical protein CPF_1337 [Clostridium perfringens ATCC 13124] gi|168212064|ref|ZP_02637689.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|110675076|gb|ABG84063.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] gi|170710019|gb|EDT22201.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] Length = 183 Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|269929208|ref|YP_003321529.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] gi|269788565|gb|ACZ40707.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] Length = 250 Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVI--LDATFGAGGYSRSFCKMGS--NVIALDRD 67 AI + +HV +L +L+ P + +D GAGG S + + V+ALD Sbjct: 28 AITPSRAEHVALLT----SLIPVRPDEPFLAVDLACGAGGLSAAILERFPASQVVALDGS 83 Query: 68 PFAVSCGQETMRDYKEQFSLFQ 89 + + + Y + L Sbjct: 84 HRMLDEARRRLAPYAGRVDLRH 105 >gi|168218096|ref|ZP_02643721.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] gi|182379886|gb|EDT77365.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] Length = 183 Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|326500516|dbj|BAK06347.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 259 Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 16/94 (17%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQ--- 84 G ++DAT G G + + KM V +D A+ + + Sbjct: 84 VRKGDTVVDATCGNGNDTFALLKMVSDETGRGRVYGMDIQDSAIDNTSSFLNMAVDTHEK 143 Query: 85 -----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 FS+ + + V V F+LG Sbjct: 144 ELVKLFSICHSRMEDI--VPKGSPVRLVAFNLGY 175 >gi|291438811|ref|ZP_06578201.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341706|gb|EFE68662.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 260 Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQET 77 +++ LL+ G +LDA G G + + G VI +DRDP + + Sbjct: 33 RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARAR 87 >gi|239930453|ref|ZP_04687406.1| hypothetical protein SghaA1_19676 [Streptomyces ghanaensis ATCC 14672] Length = 257 Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQET 77 +++ LL+ G +LDA G G + + G VI +DRDP + + Sbjct: 30 RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARAR 84 >gi|119717022|ref|YP_923987.1| methyltransferase type 11 [Nocardioides sp. JS614] gi|119537683|gb|ABL82300.1| Methyltransferase type 11 [Nocardioides sp. JS614] Length = 249 Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 30 ALLNPAPGKVILDATFGAGG--YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 L PG+ +LD GAGG ++ + G++V+A D D ++ E KE + Sbjct: 7 DRLGLRPGERVLD--MGAGGGRHAFEMYRRGADVVAFDMDADELAGVLEIFGAMKENGEV 64 Query: 88 FQATFSQLQD 97 + + ++ Sbjct: 65 PEGANADIKQ 74 >gi|227510589|ref|ZP_03940638.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190241|gb|EEI70308.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 191 Score = 39.7 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 14/112 (12%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + H LL++ ++ G ++D T G G + K+ V D Sbjct: 1 MNQLPNALQFSHQ--LLKEAVST-----GDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDYVPDK-GVDGVVFDLGV 113 A+ ++ Q + +++ + + D + +F+LG Sbjct: 54 IQQQALQHTISLLKKNLSSLQNVQLYKKSHAEIDNILDDNVRISAAIFNLGY 105 >gi|182626337|ref|ZP_02954092.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|177908356|gb|EDT70901.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] Length = 183 Score = 39.7 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ V+ +V++LG Sbjct: 81 YIKEENVECIVYNLGY 96 >gi|325203836|gb|ADY99289.1| putative rRNA methylase [Neisseria meningitidis M01-240355] Length = 188 Score = 39.3 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|309378751|emb|CBX22577.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 188 Score = 39.3 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|18310063|ref|NP_561997.1| hypothetical protein CPE1081 [Clostridium perfringens str. 13] gi|18144742|dbj|BAB80787.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 188 Score = 39.3 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F Sbjct: 30 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENFE---T 85 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 86 YIKEENVDCIVYNLGY 101 >gi|169342633|ref|ZP_02863677.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169299275|gb|EDS81344.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 183 Score = 39.3 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + ++ E F + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYKSKNKENVEVILDSHENF---KT 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|28210208|ref|NP_781152.1| putative rRNA methylase [Clostridium tetani E88] gi|28202644|gb|AAO35089.1| putative rRNA methylase [Clostridium tetani E88] Length = 192 Score = 39.3 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 G + +DAT G G + CK+ V + D A+ ++ + ++ Sbjct: 23 KLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKLYQNNIHWAELI 82 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + D + ++F+LG Sbjct: 83 LDGHENMDKYLKEEPKIILFNLGY 106 >gi|116334949|ref|YP_802444.1| hypothetical protein CRP_047 [Candidatus Carsonella ruddii PV] gi|116235230|dbj|BAF35078.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 193 Score = 39.3 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 7/113 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSNVI-ALDRDPFAVSC 73 H +L +++ + +LD TFG GGY + K +I +D + Sbjct: 1 MKNKHTTILPNRLL-----YKKEYLLDFTFGCGGYIKNLILKQKFKIIYTIDVSQISYLI 55 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + F L +++ VD +++D G++S +I + Sbjct: 56 SNKIYNKFFFFFRLKIKNINKIFKRFNLINVDFIIYDQGINSYEIKNFYYKLN 108 >gi|326434165|gb|EGD79735.1| hypothetical protein PTSG_13091 [Salpingoeca sp. ATCC 50818] Length = 441 Score = 39.3 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R + R +P ++ + KK P +++ N RSRSA+L+ Sbjct: 386 RAAEDALRQM----QPPRWTLPPELE---YRCVWKKEAGPAGKELRRNPRSRSARLQMYE 438 Query: 316 RT 317 R Sbjct: 439 RI 440 >gi|126651273|ref|ZP_01723480.1| SAM-dependent methyltransferase [Bacillus sp. B14905] gi|126591802|gb|EAZ85885.1| SAM-dependent methyltransferase [Bacillus sp. B14905] Length = 192 Score = 39.3 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL+ + G ++DAT G G+ F V A D AV + Sbjct: 13 LLKDSVE-----EGDAVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLHRLL 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D+ + + ++ ++V V +F+LG Sbjct: 67 DHGLEHRVLVLNKGHEEVANFVHK-KVAAAIFNLGY 101 >gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] Length = 426 Score = 39.3 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + S V+A+D D + QE ++ K Sbjct: 235 ALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + QD+ + D ++ D S+ + + Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|163942480|ref|YP_001647364.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4] gi|163864677|gb|ABY45736.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4] Length = 190 Score = 39.3 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 5/52 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80 G +DAT G G+ F V D A+ ++ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKK 67 >gi|255030879|ref|ZP_05302830.1| hypothetical protein LmonL_20366 [Listeria monocytogenes LO28] Length = 68 Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 5/51 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80 G ++DAT G G+ +V+ D A+ + + Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLEN 67 >gi|255282303|ref|ZP_05346858.1| UbiE/COQ5 methyltransferase [Bryantella formatexigens DSM 14469] gi|255267251|gb|EET60456.1| UbiE/COQ5 methyltransferase [Bryantella formatexigens DSM 14469] Length = 243 Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 8/149 (5%) Query: 45 FGAG-GYS-RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102 G G GYS + + G VIALD++ + ++ ++ + + D Sbjct: 40 VGCGTGYSTLALLENGHKVIALDKNNECIEKAKKLLQQKGYSIGAMPD--ADVCFIENDV 97 Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162 ++ + ++Q + Sbjct: 98 VTREFYSEVLSDLQFDAVICWNVGSYWDKENVQFYVPYMLEYGLNIDQIKE----NVESS 153 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 GE + A +++ + T ++ Sbjct: 154 YGELILWNACKIATMRKVPMHIVERTGEI 182 >gi|312796682|ref|YP_004029604.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI 454] gi|312168457|emb|CBW75460.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI 454] Length = 206 Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 L P +LD G G + R F + G V+ALDRD A++ E Sbjct: 15 HLVPR-DGTVLDVACGRGRHVRWFAQRGHPVVALDRDAQALAALAEW 60 >gi|90419370|ref|ZP_01227280.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90336307|gb|EAS50048.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 217 Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 29 IALLNPAPGKVILDATFGAG-GYSRSFCKMG-SNVIALDRDPFAVSCGQETMR 79 I L P V+LD G G GYS + +V++L++DP E + Sbjct: 70 IQLAAIRPDDVVLD--VGCGTGYSSAVLSHLAGSVVSLEQDPDLAEAATENLA 120 >gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 458 Score = 39.3 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 +L ++ I L + ++DA G G G S + K V +D P A+ +E Sbjct: 297 TSILYDEAIKALALTKNETVVDAYCGVGTIGLSLA--KHAKEVRGMDIIPQAIENAKENA 354 Query: 79 RDYKEQFSLF 88 R + + + Sbjct: 355 RRIQANNTHY 364 >gi|308161050|gb|EFO63512.1| Met-10 protein [Giardia lamblia P15] Length = 430 Score = 39.3 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 16/155 (10%) Query: 14 HHTIGDHVP-VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 H ++ H+ V P ++LD T G G ++ K +N+I D +P A Sbjct: 224 HLSLAKHISQV----------IRPNDLVLDGTCGIGPHALLLAKRFNFTNLICNDLNPDA 273 Query: 71 VSCGQETMRDY--KEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +E + + F S L + +P+K + V+F L S+ + +GFS Sbjct: 274 YKSLKENINMNKVDHAITCFNEDVSSLLERLLPEKNLKAVIFSLPELSIDLLKAMKGFSG 333 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162 ++ D++ + + L + Sbjct: 334 IYCFLECFTRVPPHLAYYDLLLRCSESLLDDKMCT 368 >gi|161524353|ref|YP_001579365.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616] gi|189350893|ref|YP_001946521.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341782|gb|ABX14868.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616] gi|189334915|dbj|BAG43985.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC 17616] Length = 200 Score = 39.3 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 +LD G G ++R F G V+ALDRDP A++ + Sbjct: 29 VRAHGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAALRAI 72 >gi|301609194|ref|XP_002934152.1| PREDICTED: trimethylguanosine synthase-like [Xenopus (Silurana) tropicalis] Length = 845 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 V++DA G GG + F K G+ VIA+D DP + + Y ++ + F L Sbjct: 689 GVVVDAFCGVGGNAIQFAKAGNRVIAVDIDPVKLDFARNNAEVYGVTDRIEFIRGDFMLL 748 Query: 96 QD 97 Sbjct: 749 AQ 750 >gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] Length = 429 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 + LL+P G+ ILD A GG + + +V+A+D D +S +E ++ Sbjct: 238 CVDLLDPQDGEQILD--LCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLNL 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ D+ D ++ D S+ + + Sbjct: 296 HAVVRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|15676645|ref|NP_273789.1| hypothetical protein NMB0747 [Neisseria meningitidis MC58] gi|7225976|gb|AAF41160.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325140096|gb|EGC62625.1| putative rRNA methylase [Neisseria meningitidis CU385] Length = 188 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPK-PLDAAIFNFGW 100 >gi|218767870|ref|YP_002342382.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491] gi|121051878|emb|CAM08184.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491] gi|319410117|emb|CBY90453.1| putative rRNA methyltransferase [Neisseria meningitidis WUE 2594] Length = 188 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPK-PLDAAIFNFGW 100 >gi|218283098|ref|ZP_03489188.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989] gi|218216119|gb|EEC89657.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989] Length = 175 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Query: 30 ALLNP--APGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFS 86 L P + +DAT G G + F V + +E + + + F Sbjct: 10 EFLKPVLHKQAICVDATLGQGKDTDFFLSQNVHKVYGFEIQRDVFESTKERLGNQRTCF- 68 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 F +++Y+ + VD ++F+ G Sbjct: 69 -FHVGHEHMEEYIHE-EVDAIIFNFGY 93 >gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 323 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 9/79 (11%) Query: 11 SAIHHTIGDHVP----VLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIA 63 + + + +G +VP +L V+ L+P PG +LDA GG + +IA Sbjct: 97 ATLEYMMGYYVPQDAASMLPPVV--LDPKPGDRVLDACAAPGGKTTHLAQLMDNEGTLIA 154 Query: 64 LDRDPFAVSCGQETMRDYK 82 +D DP + + + Sbjct: 155 IDVDPDRMRALKSNLARCG 173 >gi|110802121|ref|YP_698470.1| hypothetical protein CPR_1148 [Clostridium perfringens SM101] gi|110682622|gb|ABG85992.1| conserved hypothetical protein [Clostridium perfringens SM101] Length = 183 Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AVS + ++ E F Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVSSYKSKNKENVEVILDSHENFE---T 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|90413380|ref|ZP_01221373.1| ribosomal protein L11 methyltransferase [Photobacterium profundum 3TCK] gi|90325622|gb|EAS42091.1| ribosomal protein L11 methyltransferase [Photobacterium profundum 3TCK] Length = 294 Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGSN-VIALDRDPFAVSCGQETMRDYK 82 + L+ G+ I+D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGQTIID--FGCGSGILAIAALKLGAKKVIGIDIDPQAIQASRDNAERNG 206 >gi|326384262|ref|ZP_08205944.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395] gi|326197127|gb|EGD54319.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395] Length = 240 Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 L+ PG ++D G G +S + G++VIA D+ Sbjct: 4 DRLDVGPGVRVIDIGAGQGRHSYEMLRRGADVIAFDQ 40 >gi|329117650|ref|ZP_08246367.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020] gi|326908055|gb|EGE54969.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020] Length = 180 Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKE 83 L++V+ + +DAT G G + F + VIA D A+ ++ + + Sbjct: 12 LKEVLT-----QDSLFVDATMGNGNDTLYFAPLVKEVIAFDIQEEALLATRKKLDAIHVN 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + Y +DG +F+LG Sbjct: 67 NVQLILDGHQHVDKYTDK--IDGAIFNLGY 94 >gi|295398842|ref|ZP_06808836.1| rRNA methylase [Aerococcus viridans ATCC 11563] gi|294972932|gb|EFG48765.1| rRNA methylase [Aerococcus viridans ATCC 11563] Length = 188 Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 10/89 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQ----- 84 G +LDAT G G + ++ V LD A++ ++ + + + Sbjct: 16 KVHKGDHVLDATVGKGNDTLLLSQLVGQEGIVYGLDIQAQAIAFAEKRLSEEAKFKNTKL 75 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F + Q+ D+ + +F+LG Sbjct: 76 FVKNHSELDQV--IPTDEKLQSAIFNLGY 102 >gi|126642775|ref|YP_001085759.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] gi|169632585|ref|YP_001706321.1| putative SAM-dependent methyltransferase [Acinetobacter baumannii SDF] gi|126388659|gb|ABO13157.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] gi|169151377|emb|CAP00101.1| conserved hypothetical protein; putative SAM-dependent methyltransferase [Acinetobacter baumannii] Length = 194 Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A E Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70 Query: 79 RDYKEQFSLFQATFSQLQ 96 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDFN 87 >gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] Length = 421 Score = 39.3 bits (90), Expect = 0.97, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LLNP G+ +LDA GG + + +V+ALD D ++ QE + Q +L Sbjct: 239 LLNPQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQATLHC 298 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A + ++ + D ++ D+ ++ + + Sbjct: 299 APAENVHEWWDGQPFDAILADVPCTASGTMKRNPDIKW 336 >gi|261368779|ref|ZP_05981662.1| putative rRNA methylase [Subdoligranulum variabile DSM 15176] gi|282569124|gb|EFB74659.1| putative rRNA methylase [Subdoligranulum variabile DSM 15176] Length = 159 Score = 39.3 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQET 77 L + + + APG +DAT G G+ F V+ALD P AV Sbjct: 104 LCHEFLTA-HLAPGGFCIDATCGN-GHDTEFLCRLAGPQGRVLALDIQPRAVEATNAR 159 >gi|24380072|ref|NP_722027.1| hypothetical protein SMU.1697c [Streptococcus mutans UA159] gi|317455176|pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative Methyltransferase From Streptococcus Mutans In Complex With Sah gi|317455177|pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative Methyltransferase From Streptococcus Mutans In Complex With Sah gi|24378066|gb|AAN59333.1|AE014999_1 conserved hypothetical protein [Streptococcus mutans UA159] Length = 181 Score = 39.3 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L +V+ + +DAT G G + + V A D A+ +E + + Sbjct: 13 LSQVLD-----KNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLEQLNIK 67 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 Q + + + +F+LG Sbjct: 68 NVQLILDGHQTINKYVTEPIRAAIFNLGY 96 >gi|229019986|ref|ZP_04176776.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273] gi|229026221|ref|ZP_04182581.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272] gi|228735067|gb|EEL85702.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272] gi|228741307|gb|EEL91517.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273] Length = 177 Score = 39.3 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80 G +DAT G G+ F V D A+ +++ Sbjct: 4 AVKEGDYAIDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKE 54 >gi|260548967|ref|ZP_05823189.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260408135|gb|EEX01606.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 192 Score = 38.9 bits (89), Expect = 1.00, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A E Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70 Query: 79 RDYKEQFSLFQATFSQLQ 96 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDFN 87 >gi|300704486|ref|YP_003746089.1| hypothetical protein RCFBP_20290 [Ralstonia solanacearum CFBP2957] gi|299072150|emb|CBJ43482.1| conserved protein of unknown function, S-adenosyl-L-methionine-dependent methyltransferase domain [Ralstonia solanacearum CFBP2957] Length = 170 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 33 NPAPGK-VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 P P +LD G G ++R G V LDRD A++ Sbjct: 5 APLPAGARVLDVACGRGRHARWLAARGLRVTGLDRDADALA 45 >gi|227524748|ref|ZP_03954797.1| rRNA methylase [Lactobacillus hilgardii ATCC 8290] gi|227088102|gb|EEI23414.1| rRNA methylase [Lactobacillus hilgardii ATCC 8290] Length = 191 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + H+ LL++ ++ G ++D T G G + K+ V D Sbjct: 1 MNQLPNALQFSHL--LLKEAVST-----GDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDY-VPDKGVDGVVFDLGV 113 A+ + Q + +++ + + + +F+LG Sbjct: 54 IQQQALQHTISLLEKNLSGLQNVQLYKKSHAEIDNVLDNNVRISAAIFNLGY 105 >gi|227513603|ref|ZP_03943652.1| rRNA methylase [Lactobacillus buchneri ATCC 11577] gi|227083119|gb|EEI18431.1| rRNA methylase [Lactobacillus buchneri ATCC 11577] Length = 191 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + H+ LL++ ++ G ++D T G G + K+ V D Sbjct: 1 MNQLPNALQFSHL--LLKEAVST-----GDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDY-VPDKGVDGVVFDLGV 113 A+ + Q + +++ + + + +F+LG Sbjct: 54 IQQQALQHTISLLEKNLSGLQNVQLYKKSHAEIDNVLDNNVRISAAIFNLGY 105 >gi|302036875|ref|YP_003797197.1| putative dihydroneopterin aldolase and SAM-dependent methyltransferase [Candidatus Nitrospira defluvii] gi|190343289|gb|ACE75677.1| putative dihydroneopterin aldolase/SAM-dependent methyltransferase [Candidatus Nitrospira defluvii] gi|300604939|emb|CBK41272.1| putative Dihydroneopterin aldolase and SAM-dependent methyltransferase (modular protein) [Candidatus Nitrospira defluvii] Length = 309 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV----SCGQET 77 P +LD G G ++ G V A+DRD A+ +E Sbjct: 140 PKGRVLDVAAGRGRHALHLLSHGMEVEAIDRDSLALTALKEAAEER 185 >gi|313894507|ref|ZP_07828071.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412] gi|313440903|gb|EFR59331.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412] Length = 191 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 35 APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 KV++DAT G G+ + + G ++ +D A++ +E ++ + Sbjct: 20 KKAKVVVDATCGN-GHDLLYLAKRAQKGCHLFGIDIQMKAINTSKELLKTNDIAPDVSLT 78 Query: 91 TFSQLQDYVPDKGVDGVVFDL 111 D + V DL Sbjct: 79 FIHDSHDLALAHQLKDEVIDL 99 >gi|310828099|ref|YP_003960456.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612] gi|308739833|gb|ADO37493.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612] Length = 208 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 8/81 (9%) Query: 41 LDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ-----FSLFQATF 92 +DAT G G + + V + D A+ ++ + + F T Sbjct: 45 VDATAGTGADTCLLARSVGACGKVYSFDVQKEALKETEQRLSAEGLRDRVLLFHKGHETM 104 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + + D + G++F+LG Sbjct: 105 GSIPELRQDSKIMGIMFNLGY 125 >gi|261420271|ref|YP_003253953.1| methyltransferase type 11 [Geobacillus sp. Y412MC61] gi|319767081|ref|YP_004132582.1| methyltransferase type 11 [Geobacillus sp. Y412MC52] gi|261376728|gb|ACX79471.1| Methyltransferase type 11 [Geobacillus sp. Y412MC61] gi|317111947|gb|ADU94439.1| Methyltransferase type 11 [Geobacillus sp. Y412MC52] Length = 189 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAG-GYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81 ++ I++L+ P I+D G+G GY V A+D P + ++ + + Sbjct: 26 QQAISMLSVKPNDTIVD--LGSGNGYFTIPLAQATNGKVYAIDVQPEMIQLLKKRAQQF 82 >gi|261364723|ref|ZP_05977606.1| putative rRNA methylase [Neisseria mucosa ATCC 25996] gi|288567020|gb|EFC88580.1| putative rRNA methylase [Neisseria mucosa ATCC 25996] Length = 189 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 LL++ + P LD T G G + G V A D A++ + + Sbjct: 13 LLKQAL-----KPDARALDGTAGNGNDT-LMLARSIGSGGKVWAFDVQEQALANTRMRLE 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++ L L ++ + +D VF+ G Sbjct: 67 EAGMADRVELILDGHENLATHIRE-PLDAAVFNFGW 101 >gi|260557274|ref|ZP_05829490.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260409380|gb|EEX02682.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 194 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A E Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70 Query: 79 RDYKEQFSLFQATFSQLQ 96 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDFN 87 >gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] Length = 429 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 + LL+P G+ ILD A GG + + +V+A+D D +S +E ++ K Sbjct: 238 CVDLLDPQNGEQILD--LCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLKL 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ D+ D ++ D S+ + + Sbjct: 296 HADVRVGDGRIPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|295676911|ref|YP_003605435.1| hypothetical protein BC1002_1861 [Burkholderia sp. CCGE1002] gi|295436754|gb|ADG15924.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 200 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71 APG +LD GAG ++R F +G V A+DRD A+ Sbjct: 26 IAPGGAVLDVASGAGRHARFFASLGHPVTAIDRDAAAL 63 >gi|205374580|ref|ZP_03227375.1| putative rRNA methylase [Bacillus coahuilensis m4-4] Length = 190 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +++DAT G G+ + +V A D A+ + ++ E + Sbjct: 17 AVDKGDIVIDATMGN-GHDTLYLAQLVGEEGHVFAFDIQNEAIDSTRMQLKKSGITEGVT 75 Query: 87 LFQATFSQLQD 97 L ++D Sbjct: 76 LIHRGHEHVKD 86 >gi|325136027|gb|EGC58637.1| putative rRNA methylase [Neisseria meningitidis M0579] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|304387944|ref|ZP_07370117.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338041|gb|EFM04178.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|325131797|gb|EGC54497.1| putative rRNA methylase [Neisseria meningitidis M6190] gi|325133737|gb|EGC56393.1| putative rRNA methylase [Neisseria meningitidis M13399] gi|325137847|gb|EGC60422.1| putative rRNA methylase [Neisseria meningitidis ES14902] gi|325197969|gb|ADY93425.1| putative rRNA methylase [Neisseria meningitidis G2136] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|261392882|emb|CAX50463.1| putative rRNA methyltransferase [Neisseria meningitidis 8013] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|254674314|emb|CBA10098.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|316983733|gb|EFV62714.1| rRNA methylase family protein [Neisseria meningitidis H44/76] gi|325200565|gb|ADY96020.1| putative rRNA methylase [Neisseria meningitidis H44/76] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|254669738|emb|CBA03926.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325144213|gb|EGC66520.1| putative rRNA methylase [Neisseria meningitidis M01-240013] gi|325206408|gb|ADZ01861.1| putative rRNA methylase [Neisseria meningitidis M04-240196] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|254804629|ref|YP_003082850.1| putative rRNA methylase [Neisseria meningitidis alpha14] gi|254668171|emb|CBA04853.1| putative rRNA methylase [Neisseria meningitidis alpha14] gi|325127866|gb|EGC50772.1| putative rRNA methylase [Neisseria meningitidis N1568] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|161869691|ref|YP_001598858.1| hypothetical protein NMCC_0711 [Neisseria meningitidis 053442] gi|161595244|gb|ABX72904.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 188 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSE-PLNAAIFNFGW 100 >gi|325290000|ref|YP_004266181.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271] gi|324965401|gb|ADY56180.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271] Length = 200 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 + G ++LD T G G + F V A D AV ++ ++D ++ + Sbjct: 21 ISEGDLVLDCTAGLGRDT-LFLARLVGPRGKVYAFDIQDKAVEATKKLLQDEGLLKRVEV 79 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 QA + L++ + VF+LG Sbjct: 80 LQADHADLRE-WIKTEIKAAVFNLGF 104 >gi|226224265|ref|YP_002758372.1| hypothetical protein Lm4b_01675 [Listeria monocytogenes Clip81459] gi|225876727|emb|CAS05436.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 192 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++D T G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDTTCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|256394198|ref|YP_003115762.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928] gi|256360424|gb|ACU73921.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928] Length = 252 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALD 65 +VI L PG ++D G GGY G+ +I +D Sbjct: 51 EVIEALRLEPGTRLVDLACGRGGYGLEMAARTGATLIGID 90 >gi|6478279|gb|AAF13789.1|AF129501_4 unknown [Buchnera aphidicola] Length = 28 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 6/26 (23%), Positives = 12/26 (46%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVIL 41 I H PV+ +++I L + + Sbjct: 3 DILKHFPVMKKELIQSLKIKKNGIYI 28 >gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae bacterium 9_2_54FAA] Length = 430 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 9/118 (7%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 + H + LL+P G+ ILD GG + + +V+A+D D Sbjct: 230 TVQDASAQH-------CVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDEN 282 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +E + ++Q + + + DK D ++ D S+ + + Sbjct: 283 RLRRVKENLHRLQQQAEVKCGDGRYPEKWCGDKQFDRILLDAPCSATGVIRRHPDIKW 340 >gi|303228827|ref|ZP_07315641.1| methyltransferase domain protein [Veillonella atypica ACS-134-V-Col7a] gi|302516539|gb|EFL58467.1| methyltransferase domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 191 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK-----EQF 85 V++DAT G G+ + + ++ +D AVS +E + K Sbjct: 20 KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + L + + +D ++F+LG Sbjct: 79 FLHNSHDIALHQEIKENTIDLIIFNLGY 106 >gi|329120638|ref|ZP_08249301.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460862|gb|EGF07196.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 200 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%) Query: 35 APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETM--RDYKEQFSLF 88 G LD T G G+ V A D P A++ ++ + +Q L Sbjct: 24 KSGGRALDGTAGN-GHDTLLLAWLAGEDGIVWAFDVQPQALANTKDRLKTAGADKQVRLI 82 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 A+ ++L DYV + +D +F+ G Sbjct: 83 CASHARLADYVAE-PLDAAMFNFGY 106 >gi|183982927|ref|YP_001851218.1| SAM-dependent methyltransferase [Mycobacterium marinum M] gi|183176253|gb|ACC41363.1| SAM-dependent methyltransferase [Mycobacterium marinum M] Length = 252 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L PG ++D GAG ++ + G++V+A DRD + +R Sbjct: 7 DRLGIGPGATVIDVGCGAGRHAFEAYRCGADVVAFDRDAAELRAVDTMLRAM 58 >gi|261378773|ref|ZP_05983346.1| putative rRNA methylase [Neisseria cinerea ATCC 14685] gi|269144749|gb|EEZ71167.1| putative rRNA methylase [Neisseria cinerea ATCC 14685] Length = 188 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 G LD T G G+ F V A D P A++ Q +++ + + Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGILGKVWAFDIQPQALTLTQCRLKEAGYENAQLILD 78 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 + + ++ +F+ G Sbjct: 79 GHENLKQYVSEPLNAAIFNFGW 100 >gi|317130009|ref|YP_004096291.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522] gi|315474957|gb|ADU31560.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522] Length = 192 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 7/85 (8%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD--YKEQFS 86 G V++DAT G G + F V + D A++ ++ + + Sbjct: 18 AVTEGDVVIDATAGKGNDT-LFLSKLVSNTGKVYSFDIQEAAITATRKKLAENNQDSNVQ 76 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL 111 L +L +Y+ + + + Sbjct: 77 LIHDGHEKLLNYLDQDDYENIAGAI 101 >gi|42783939|ref|NP_981186.1| hypothetical protein BCE_4893 [Bacillus cereus ATCC 10987] gi|42739869|gb|AAS43794.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 190 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRD 80 G +DAT G G + V D A+ +++ Sbjct: 17 AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKE 67 >gi|161936282|ref|YP_131495.2| ribosomal protein L11 methyltransferase [Photobacterium profundum SS9] gi|60390454|sp|Q6LLY5|PRMA_PHOPR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase Length = 294 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK I+D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLVGKTIID--FGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRDNAERNG 206 >gi|46914918|emb|CAG21693.1| putative ribosomal protein L11 methyltransferase [Photobacterium profundum SS9] Length = 317 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK I+D FG G + K+G+ VI +D DP A+ ++ Sbjct: 172 CLEWLDGQDLVGKTIID--FGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRDNAERNG 229 >gi|295133869|ref|YP_003584545.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia profunda SM-A87] gi|294981884|gb|ADF52349.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia profunda SM-A87] Length = 411 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG ++D GAGG + + + VIALD Sbjct: 216 VADFLDVKPGDRVVDTCAGAGGKSLHLAALMENKGQVIALD 256 >gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032] gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter turicensis z3032] Length = 425 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 + LL P G+ ILD A GG + + NV+A+D D +S E ++ K Sbjct: 234 CVELLAPQNGETILD--LCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKRVKM 291 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + D D ++ D S+ + + Sbjct: 292 RAEVKVGDGRFPATWCGDMQFDRILLDAPCSATGVIRRHPDIKW 335 >gi|303232176|ref|ZP_07318879.1| methyltransferase domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302513282|gb|EFL55321.1| methyltransferase domain protein [Veillonella atypica ACS-049-V-Sch6] Length = 191 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK-----EQF 85 V++DAT G G+ + + ++ +D AVS +E + K Sbjct: 20 KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + L + + +D ++F+LG Sbjct: 79 FLHNSHDIALHQEIKENTIDLIIFNLGY 106 >gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2] gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2] Length = 283 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 7/114 (6%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 DAT G GG +R+ G+ VIA++RD A+ ++ R Y + + Sbjct: 48 DATVIEIGPGPGGLTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDF 107 Query: 96 QDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 D +V +L + + + DM + ++ + Sbjct: 108 DPTTMLDGARARIVANLPYNIATLLLTGWLTADPWPPWFDMMVLMFQREVAERI 161 >gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] Length = 435 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL GKV++DA GG + + + +IA+D+DP + E + Sbjct: 242 LLPDLDGKVVVDACAAPGGKTAHILERFNPKKLIAIDQDPKRIVRIGENLERLALNLDNV 301 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + VD +V D S Sbjct: 302 EILVADATTWQAQEPVDCIVLDAPCS 327 >gi|291532848|emb|CBL05961.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Megamonas hypermegale ART12/1] Length = 196 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-------QFSLF 88 +I+DAT G G + + + + A D A+ + + K+ S Sbjct: 24 IIVDATAGNGNDTLFLAQNTLNNAQIYAFDIQKEAIENTKALLIKNKDNINLPLENISFI 83 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + +Y +D +F+LG Sbjct: 84 HDSHEHIDNY-IQTKIDIAIFNLGY 107 >gi|240141547|ref|YP_002966027.1| putative protein-L-isoaspartate O-methyltransferase [Methylobacterium extorquens AM1] gi|240011524|gb|ACS42750.1| putative protein-L-isoaspartate O-methyltransferase [Methylobacterium extorquens AM1] Length = 216 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79 P+LL ++I L PG LD G G GY + + V+AL+ DP + +E + Sbjct: 68 PMLLARLIQALKIRPGTRALD--VGTGYGYGAAVLRQLGAEVVALESDPDLIGAARERLG 125 Query: 80 DYKEQFS 86 D Sbjct: 126 DTVNLVQ 132 >gi|328954204|ref|YP_004371538.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109] gi|328454528|gb|AEB10357.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109] Length = 188 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 14/78 (17%) Query: 13 IHHTIGDHVP----------VLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC---KMG 58 ++ H P +L +++I L+ PG VILDA G G S+ F K Sbjct: 1 MNQEKETHKPHQHAGRSSERLLNKEIILKELDIFPGAVILDAGCGNGYMSKEFSRMQKNS 60 Query: 59 SNVIALDRDPFAVSCGQE 76 + ALD D A+ ++ Sbjct: 61 GKIFALDPDKNAIEILRQ 78 >gi|224542049|ref|ZP_03682588.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM 15897] gi|224524982|gb|EEF94087.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM 15897] Length = 171 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +D T G G+ +++ + V + D A+ +E + D F D Sbjct: 20 IGVDFTMGN-GHDTKALIECCKEVYSFDIQEEALIHTRELVGDKAHLIHDSHENFDHYVD 78 >gi|195953944|ref|YP_002122234.1| Methyltransferase type 12 [Hydrogenobaculum sp. Y04AAS1] gi|195933556|gb|ACG58256.1| Methyltransferase type 12 [Hydrogenobaculum sp. Y04AAS1] Length = 746 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 19/239 (7%) Query: 56 KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 V +D D A+S ++ YK+ F L +D +FD + Sbjct: 348 NKNCQVYGIDIDADAISYVKDR-GYYKDVFLLDLDYLQNTKDEYERFLQLKEMFDFIICG 406 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 ++ + ++ G V N A++ + +L + + Sbjct: 407 NVLEHLKN--PTNALDFITSKLKFGGQVLVSVPNIAHMDIILNLLQ-----GRFNYSEFG 459 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I+ F L + F K + +++ L Sbjct: 460 ILDNTHLRFFTKRSFLEWIK-NANEFYKEKGFKFDVKYLGG--------TTYISEFLEDI 510 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKV 292 + +I+ H LE +G + +I S +P +F+ I+ K+ Sbjct: 511 KVKYSNLYNMILSGNHDLEILQHIFVLTKINGLANTYNLNDLIESTEYPDIFKIISSKI 569 >gi|313668775|ref|YP_004049059.1| hypothetical protein NLA_14850 [Neisseria lactamica ST-640] gi|313006237|emb|CBN87699.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 188 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +V+ G LD T G G+ F V ALD P A++ + ++ Sbjct: 13 LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWALDIQPQALNNTRCRLQ 66 Query: 80 DYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L+ YV + ++ +F+ G Sbjct: 67 EAGYSNVRLILDGHENLKQYVSE-PLNAAIFNFGW 100 >gi|188584795|ref|YP_001916340.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349482|gb|ACB83752.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 190 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK--EQFSL 87 + G ++DAT G G+ + + V A D A+ + ++ E+ L Sbjct: 21 ISQGDRVVDATCGN-GHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRL 79 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 +L + + V V+F+LG Sbjct: 80 LNKGHEKLIE-DVEGPVSCVMFNLGY 104 >gi|223043516|ref|ZP_03613561.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus capitis SK14] gi|314933913|ref|ZP_07841278.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus caprae C87] gi|222443004|gb|EEE49104.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus capitis SK14] gi|313654063|gb|EFS17820.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus caprae C87] Length = 187 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 4/79 (5%) Query: 39 VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQ 94 +++DAT G G + + V D A+ Q + D+ Q Sbjct: 23 IVIDATCGNGNDTLYLAEKVTNGFVYGFDIQKEAIDNTQLKVSDFNNVSLIQDSHENVKQ 82 Query: 95 LQDYVPDKGVDGVVFDLGV 113 +D +F+LG Sbjct: 83 HVLERHLNLIDCAIFNLGY 101 >gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86 G GG +R+ G+ VIA++RD A++ +E + + + Sbjct: 27 GPGGLTRALLTEGARKVIAIERDQRAIAALEEIAEHHPGRLT 68 >gi|84488917|ref|YP_447149.1| CbiT [Methanosphaera stadtmanae DSM 3091] gi|84372236|gb|ABC56506.1| CbiT [Methanosphaera stadtmanae DSM 3091] Length = 191 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 VI+ + V++D G GG + F K + ++D +P A+ + + + Q + Sbjct: 29 VISKVKLTDEDVVVDVGCGTGGLTLEFAKRAKKIYSIDMNPDAIKTTRANLEKFGLQNKV 88 Query: 88 FQATFSQLQDYVPDKGVDGVVF 109 L+ + ++ Sbjct: 89 ELIEDEGLKALDHIEDFTKLMI 110 >gi|206901460|ref|YP_002250835.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus thermophilum H-6-12] gi|206740563|gb|ACI19621.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus thermophilum H-6-12] Length = 252 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETMRDYKEQFSLF 88 ++L+ G +ILD G G ++ K G I +DR + + E +D + Sbjct: 38 SILSIKRGHLILDLGCGFGRHTLELGKRGYRTIGIDRSEDLIEIAKEEAKKDRVFNVEFY 97 Query: 89 QATFSQLQDYVPDKGVDGVVF 109 + ++ V ++ Sbjct: 98 VMEYKDIEKLGYKFDVVFSLY 118 >gi|307152137|ref|YP_003887521.1| type 11 methyltransferase [Cyanothece sp. PCC 7822] gi|306982365|gb|ADN14246.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822] Length = 265 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 L++ PG+ ILDA G G +S K V+A+D + Q+ Sbjct: 40 KLMDIQPGETILDAGCGPGVHSIRLAKKNIKVLAIDISKTMLREAQKR 87 >gi|258438327|ref|ZP_05689611.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257848371|gb|EEV72362.1| conserved hypothetical protein [Staphylococcus aureus A9299] Length = 187 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 P ++ DAT G G + + +V D A+ ++ ++D+ Sbjct: 18 ITPESIVADATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + +D +F+LG Sbjct: 78 ENIEHHINDAHKGHIDAAIFNLGY 101 >gi|189349594|ref|YP_001945222.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC 17616] gi|189333616|dbj|BAG42686.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC 17616] Length = 356 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%) Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 ++D G GYS + D D A+ E QF Sbjct: 28 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQF 76 >gi|149372985|ref|ZP_01891941.1| putative sun protein [unidentified eubacterium SCB49] gi|149354345|gb|EDM42912.1| putative sun protein [unidentified eubacterium SCB49] Length = 403 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 L+P PG+ I+DA GAGG + + +I++D Sbjct: 219 LDPKPGQRIVDACAGAGGKSLHISEMMENKGQLISMD 255 >gi|206969833|ref|ZP_03230787.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|206735521|gb|EDZ52689.1| conserved hypothetical protein [Bacillus cereus AH1134] Length = 190 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|30264819|ref|NP_847196.1| hypothetical protein BA_5002 [Bacillus anthracis str. Ames] gi|47530304|ref|YP_021653.1| hypothetical protein GBAA_5002 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187638|ref|YP_030891.1| hypothetical protein BAS4647 [Bacillus anthracis str. Sterne] gi|65322120|ref|ZP_00395079.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str. A2012] gi|165869764|ref|ZP_02214422.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167633949|ref|ZP_02392272.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167638131|ref|ZP_02396409.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170685777|ref|ZP_02877000.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170705366|ref|ZP_02895830.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177651183|ref|ZP_02934014.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568308|ref|ZP_03021216.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227817544|ref|YP_002817553.1| hypothetical protein BAMEG_5036 [Bacillus anthracis str. CDC 684] gi|229604073|ref|YP_002869027.1| hypothetical protein BAA_5015 [Bacillus anthracis str. A0248] gi|254687560|ref|ZP_05151416.1| hypothetical protein BantC_27450 [Bacillus anthracis str. CNEVA-9066] gi|254725125|ref|ZP_05186908.1| hypothetical protein BantA1_22099 [Bacillus anthracis str. A1055] gi|254736863|ref|ZP_05194569.1| hypothetical protein BantWNA_16981 [Bacillus anthracis str. Western North America USA6153] gi|254741898|ref|ZP_05199585.1| hypothetical protein BantKB_12908 [Bacillus anthracis str. Kruger B] gi|254754504|ref|ZP_05206539.1| hypothetical protein BantV_18637 [Bacillus anthracis str. Vollum] gi|254757337|ref|ZP_05209364.1| hypothetical protein BantA9_03431 [Bacillus anthracis str. Australia 94] gi|30259494|gb|AAP28682.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47505452|gb|AAT34128.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181565|gb|AAT56941.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164714593|gb|EDR20112.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167513948|gb|EDR89316.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167530750|gb|EDR93452.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170129491|gb|EDS98354.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170670241|gb|EDT20981.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172083009|gb|EDT68071.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560564|gb|EDV14541.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227006163|gb|ACP15906.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229268481|gb|ACQ50118.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 190 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 15/147 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCS 140 L + L +P+ V G +F+LG I + L M+ Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPE 134 Query: 141 GISASDVVNQANVKDLTRI-LGILGEE 166 GI + + + R + EE Sbjct: 135 GIIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM 17230] gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM 17230] Length = 455 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 31 LLNPAPGKVILDATFGA--GG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQ 84 LL+P PG+V++D A GG + + A D D + QE + Sbjct: 260 LLDPKPGEVVID--LCAAPGGKTEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRCGISI 317 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +F + + + D V+ D +S ++ ++ Sbjct: 318 VKIFNEDARKATEILGRNIADKVLVDAPCTSSGTIMKNQELRWR 361 >gi|241758659|ref|ZP_04756773.1| methylase protein [Neisseria flavescens SK114] gi|241321170|gb|EER57366.1| methylase protein [Neisseria flavescens SK114] Length = 189 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL + + G LDAT G G+ V A D A+ Q ++ Sbjct: 13 LLRQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQSKALMQTQGRLK 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L L Y+ + +D VF+ G Sbjct: 67 ENGVDGRVALIHGGHENLLSYIDE-PLDAAVFNFGW 101 >gi|332522836|ref|ZP_08399088.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176] gi|332314100|gb|EGJ27085.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176] Length = 182 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQATFSQL 95 +++DAT G G + F + A D A+ +E + + E L Q ++ Sbjct: 19 NSILVDATMGNGNDTLYFAPKVKRLYAFDVQEKALQVTREKLQKAQLENVQLIQDGHEKV 78 Query: 96 QDYVPDKGVDGVVFDLGV 113 DY+ VD +F+LG Sbjct: 79 DDYLDQ--VDAAIFNLGY 94 >gi|218905984|ref|YP_002453818.1| hypothetical protein BCAH820_4872 [Bacillus cereus AH820] gi|218536553|gb|ACK88951.1| conserved hypothetical protein [Bacillus cereus AH820] Length = 190 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80 G +DAT G G+ F V D A+ +++ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKE 67 >gi|329664270|ref|NP_001192627.1| trimethylguanosine synthase [Bos taurus] gi|297482318|ref|XP_002692697.1| PREDICTED: hypothetical protein [Bos taurus] gi|296480654|gb|DAA22769.1| hypothetical protein BOS_13850 [Bos taurus] Length = 852 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93 I+DA G GG + F G VIA+D DP + + Y ++ F Sbjct: 689 ESGTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEIYGVVDKIEFICGDFL 748 Query: 94 QL 95 QL Sbjct: 749 QL 750 >gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] Length = 426 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 LN G++ILD GG + + V+A+D D + + ++ + ++ Sbjct: 237 DFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNATV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +++ + D ++ D S+ + + Sbjct: 297 ICGDARNPEEWWQGEKFDRILLDAPCSATGVIRRHPDIKW 336 >gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|50401583|sp|Q8ES75|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768 gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 459 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL +K + N V++DA G G S + V ++ P A+ + Sbjct: 296 VLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEING 355 Query: 83 EQ 84 Sbjct: 356 MN 357 >gi|297588509|ref|ZP_06947152.1| MraW methylase family SAM-dependent methyltransferase [Finegoldia magna ATCC 53516] gi|297573882|gb|EFH92603.1| MraW methylase family SAM-dependent methyltransferase [Finegoldia magna ATCC 53516] Length = 179 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%) Query: 39 VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 + LD TFG G S + N V D + ++ D + + F + Sbjct: 23 ICLDMTFGNGNDSYKMLSINENIEVYGFDVQKSCIDNARKI--DNLKVINDSHLNFEKYT 80 Query: 97 DYVPDKGVDGVVFDLG 112 + D V + + G Sbjct: 81 NEKIDFAVFNLGYLPG 96 >gi|87240722|gb|ABD32580.1| SAM (and some other nucleotide) binding motif; WW/Rsp5/WWP [Medicago truncatula] Length = 681 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 G ++D GAGG + F + +V+A+D DP + + Y+ Sbjct: 515 GGTLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYR 560 >gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] Length = 426 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + ++V+A+D D + E + + + Sbjct: 237 EYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLERLNLKAQV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +++ + D ++ D S+ + + Sbjct: 297 ICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|315924793|ref|ZP_07921010.1| rRNA methylase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621692|gb|EFV01656.1| rRNA methylase [Pseudoramibacter alactolyticus ATCC 23263] Length = 190 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQA 90 PG LDAT G G + + V D A++ ++ + + + + Sbjct: 22 PGDSALDATVGTGEDACFLAEAVGATGRVYGFDIQKAALTMARDKLAERQWAGPVHWYHQ 81 Query: 91 TFSQL---QDYVPDKGVDGVVFDLGV 113 L + V D + +F+LG Sbjct: 82 GHETLGTVPEIVQDSRIRAAMFNLGY 107 >gi|302871656|ref|YP_003840292.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor obsidiansis OB47] gi|302574515|gb|ADL42306.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor obsidiansis OB47] Length = 314 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 15/130 (11%) Query: 3 SKSCKTMSSAIHHTIGDHVP-VLLEKVIALLNPAPGKVILD-ATFGAGGYSRSFCKMGS- 59 SK+ + + G H VL + I PG +LD T G+G + + Sbjct: 135 SKTIVRLDPGMAFGTGTHESTVLCLEAIQN-YVKPGMNVLDVGT-GSG-----ILAIAAK 187 Query: 60 -----NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 V+A+D D AV +E + + + + + D V +V D+ + Sbjct: 188 KLLAKRVLAVDIDEVAVKVAKENANLNGVEIEIKKNNLVEGIEEKFDIVVANIVADIIIR 247 Query: 115 SMQIDCGDRG 124 Sbjct: 248 LSTYVNRVLK 257 >gi|161525683|ref|YP_001580695.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616] gi|160343112|gb|ABX16198.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616] Length = 359 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%) Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 ++D G GYS + D D A+ E QF Sbjct: 31 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQF 79 >gi|237809272|ref|YP_002893712.1| 50S ribosomal protein L11 methyltransferase [Tolumonas auensis DSM 9187] gi|259534600|sp|C4LAF1|PRMA_TOLAT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|237501533|gb|ACQ94126.1| ribosomal protein L11 methyltransferase [Tolumonas auensis DSM 9187] Length = 292 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 14/93 (15%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYKEQF 85 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ + Sbjct: 150 LDSLDLK-GKTLVD--FGCGSGILAIAALKLGAERVIGIDIDPQAIEASRDNAQ------ 200 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 QL+ Y+P+ D+ V+++ Sbjct: 201 --RNGVSDQLELYLPEDQPKNFQADIVVANILA 231 >gi|167574653|ref|ZP_02367527.1| ribosomal protein L11 methyltransferase [Burkholderia oklahomensis C6786] Length = 300 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + +V +D DP AV ++ + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGSVTGIDIDPQAVEAARQNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVAY 217 >gi|302841478|ref|XP_002952284.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f. nagariensis] gi|300262549|gb|EFJ46755.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f. nagariensis] Length = 272 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 13/46 (28%) Query: 31 LLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDP 68 L P PG ++D T + + K V+A D+DP Sbjct: 38 ALAPEPGWTVVDCCAAPGNKTT-----HLAAIMKNQGRVLAFDKDP 78 >gi|29840531|ref|NP_829637.1| hypothetical protein CCA00774 [Chlamydophila caviae GPIC] gi|29834880|gb|AAP05515.1| conserved hypothetical protein [Chlamydophila caviae GPIC] Length = 198 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 10/85 (11%) Query: 36 PGKVILDATFGAGGYSR------SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 PG ++DAT G G + K +IA D A++ Sbjct: 27 PGDTVVDATCGNG---KDCLILARLLKGKGKLIAYDVQKEALNRTALLCSKSLSPEERSV 83 Query: 90 ATFSQL-QDYVPDKGVDGVVFDLGV 113 F ++ +++ + G ++LG Sbjct: 84 IEFKEMSHEHINEAGAKLFHYNLGY 108 >gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1] gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1] Length = 403 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG ++D GAGG + + + VIA+D Sbjct: 216 VADFLDVKPGMKVVDVCAGAGGKTLHLAALMENKGQVIAMD 256 >gi|196041491|ref|ZP_03108784.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196027739|gb|EDX66353.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] Length = 190 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 13/146 (8%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G +DAT G G + V D A+ +++ + E+ L Sbjct: 17 AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKEKELFERTVL 76 Query: 88 FQATFSQLQDYVPDK---GVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDMRMSCSG 141 + L +P+ V G +F+LG I + L M+ G Sbjct: 77 VHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNS-TISAIEQLLEVMAPEG 135 Query: 142 ISASDVVNQANVKDLTRI-LGILGEE 166 I + + + R + EE Sbjct: 136 IIVLVIYHGHPEGQVERDAVLKFAEE 161 >gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus abyssi GE5] gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5] Length = 449 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 +LNP PG+VI+D GG + K + A D D + +E + + Sbjct: 254 ILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDKTRMKRLKEFVNRMGIKIVK 313 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + ++ D V+ D +S + ++ Sbjct: 314 PIIKDGRKAPEILGEEIADRVLLDAPCTSSGTIGKNPELRWR 355 >gi|28378064|ref|NP_784956.1| methyltransferase (putative) [Lactobacillus plantarum WCFS1] gi|28270898|emb|CAD63803.1| methyltransferase (putative) [Lactobacillus plantarum WCFS1] Length = 197 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78 L+ +V+ PG ++DAT G G+ + +V D A+ + Sbjct: 22 LMNQVVN-----PGDHVIDATVGN-GHDTVYLAKLVGTTGHVDGFDIQSAAIEATTTALD 75 Query: 79 -RDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGV 113 Q +L+Q + D D+ + VF+LG Sbjct: 76 KAALTHQVTLWQTGHEHIADKIAADQPIKCAVFNLGY 112 >gi|167837954|ref|ZP_02464813.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis MSMB43] Length = 300 Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 + L PG+ +LD +G G + +V +D DP AV ++ + Sbjct: 155 CMEWLEQTVQPGQTVLD--YGCGSGILAILAKKCGAGSVTGIDIDPQAVEAARQNSERNR 212 Query: 83 EQFSL 87 + Sbjct: 213 TDVAY 217 >gi|289192404|ref|YP_003458345.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus sp. FS406-22] gi|288938854|gb|ADC69609.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus sp. FS406-22] Length = 186 Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I LN V++D G+GG + + V A+D A+ ++ Sbjct: 19 VPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIARRCKFVYAIDYLEDAIEVTKQ 78 Query: 77 TMRDYK 82 + + Sbjct: 79 NLAKFN 84 >gi|13541750|ref|NP_111438.1| precorrin-6Y methylase [Thermoplasma volcanium GSS1] gi|48428139|sp|Q97A64|CBIT_THEVO RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|14325163|dbj|BAB60088.1| precorrin-8w decarboxylase [Thermoplasma volcanium GSS1] Length = 201 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 13/68 (19%) Query: 21 VPVLLEK-----VIALLNPAPGKVILD-ATFGAGG----YSRSFCKMGSNVIALDRDPFA 70 +P + ++ + L G LD T G G SR +IALDRD A Sbjct: 25 IP-MTKEEIRLISLNRLGVRNGGHFLDIGT-GTGSVAVDMSR-LAGPNGKIIALDRDEKA 81 Query: 71 VSCGQETM 78 + + + Sbjct: 82 IKLARINL 89 >gi|169829678|ref|YP_001699836.1| SAM-dependent methyltransferase [Lysinibacillus sphaericus C3-41] gi|168994166|gb|ACA41706.1| SAM-dependent methyltransferase [Lysinibacillus sphaericus C3-41] Length = 192 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL+ + G ++DAT G G+ F V A D AV + Sbjct: 13 LLKDSVE-----EGDTVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKKAVDATLHRLL 66 Query: 80 DYKEQFS--LFQATFSQLQDYVPDKGVDGVVFDLGV 113 D + + ++ +++ V +F+LG Sbjct: 67 DQSLEHRALVLNKGHEEVANFIHK-PVAAAIFNLGY 101 >gi|305667349|ref|YP_003863636.1| putative sun protein [Maribacter sp. HTCC2170] gi|88709397|gb|EAR01630.1| putative sun protein [Maribacter sp. HTCC2170] Length = 403 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG+ ++D GAGG + + + +IALD Sbjct: 216 VSEFLDVQPGQRVVDTCAGAGGKTLHLAALMQNKGQLIALD 256 >gi|254820874|ref|ZP_05225875.1| hypothetical protein MintA_13150 [Mycobacterium intracellulare ATCC 13950] Length = 252 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L P ++D GAG ++ + G++V+A DRD + +R + Sbjct: 7 DRLGIGPSSKVIDVGCGAGRHAFEAYRRGADVVAFDRDEDELRSVDTILRAMADN 61 >gi|269797986|ref|YP_003311886.1| rRNA methylase [Veillonella parvula DSM 2008] gi|269094615|gb|ACZ24606.1| putative rRNA methylase [Veillonella parvula DSM 2008] Length = 191 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 39 VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 V++DAT G G+ + + ++ +D A+ +E ++ + Sbjct: 24 VVVDATCGN-GHDLLYLSKRAQKACHLYGIDIQMKAIKTSKELLQSNDIAPEVSLTFIHD 82 Query: 95 LQDYVPDKGVDGVVFDL 111 D + V DL Sbjct: 83 SHDLAVAHQLKDEVIDL 99 >gi|238019301|ref|ZP_04599727.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748] gi|237864000|gb|EEP65290.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748] Length = 191 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Query: 39 VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKE----QFSLFQA 90 V++DAT G G+ + + G ++ +D A++ QE ++ + Sbjct: 24 VVVDATCGN-GHDLLYLAERARKGCHLYGIDIQMKAINSSQELLQSNDIAEDVSLTFIHD 82 Query: 91 TFSQ-LQDYVPDKGVDGVVFDLGV 113 + + L + + D+ +D ++F+LG Sbjct: 83 SHDRALVNQLKDEVIDLMIFNLGY 106 >gi|325478511|gb|EGC81624.1| putative rRNA methylase [Anaerococcus prevotii ACS-065-V-Col13] Length = 181 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 41 LDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +D T G G S ++A D A + + + + F + + + Y Sbjct: 23 VDMTAGNGNDSLFILDKIKAKRLVAFDIQKEAEEATKNLLGEREN-FLFILDSHANIDQY 81 Query: 99 VPDKGVDGVVFDLGV 113 K +D V++LG Sbjct: 82 -IKKKIDLAVYNLGY 95 >gi|322420924|ref|YP_004200147.1| rRNA methylase [Geobacter sp. M18] gi|320127311|gb|ADW14871.1| rRNA methylase [Geobacter sp. M18] Length = 195 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK 82 PG + +DAT G G + + V A D A+S +E + Sbjct: 26 VRPGDLAVDATCGNGFDT-ALLAQLAGETGRVWAFDVQARAISATRELLEREG 77 >gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC 10500] gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC 10500] Length = 242 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P V++DA GAGG S +F K G V A+++DP ++C + + Y Sbjct: 72 PKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKDPAVLACAKHNAKIYG--VQSKITW 129 Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151 F + + + DLG S+ G +S + + S + + Sbjct: 130 FEG----DCFEILKTHLKDLGFYSVVFASPPWGGPGYRSDEVFNLQTMEPYSLGHLYREY 185 Query: 152 NVKDLTRILG 161 + +L Sbjct: 186 SAFSKHIVLY 195 >gi|184159316|ref|YP_001847655.1| putative tellurite resistance protein-related protein [Acinetobacter baumannii ACICU] gi|332872577|ref|ZP_08440546.1| methyltransferase domain protein [Acinetobacter baumannii 6014059] gi|183210910|gb|ACC58308.1| putative tellurite resistance protein-related protein [Acinetobacter baumannii ACICU] gi|322509227|gb|ADX04681.1| SAM-dependent methyltransferase [Acinetobacter baumannii 1656-2] gi|323519256|gb|ADX93637.1| putative tellurite resistance protein-related protein [Acinetobacter baumannii TCDC-AB0715] gi|332739263|gb|EGJ70121.1| methyltransferase domain protein [Acinetobacter baumannii 6014059] Length = 194 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A + Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTDRF 70 Query: 79 RDYKEQFSLFQATFSQLQ 96 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDFN 87 >gi|303242307|ref|ZP_07328793.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2] gi|302590146|gb|EFL59908.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2] Length = 189 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 18/107 (16%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 H +H +E+ G ++DAT G G + K+ +V + D Sbjct: 9 TQSHKYIEHF---VEE---------GDTVIDATAGNGSDTVFLAKLVGESGHVYSFDVQQ 56 Query: 69 FAVSCGQETMR--DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ E + D +++ L L +Y V V+F+LG Sbjct: 57 IALDRTAEKLDSLDLRDRVDLINDGHENLDNY-VKSKVKAVMFNLGY 102 >gi|160881322|ref|YP_001560290.1| methyltransferase type 11 [Clostridium phytofermentans ISDg] gi|160429988|gb|ABX43551.1| Methyltransferase type 11 [Clostridium phytofermentans ISDg] Length = 247 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 4/140 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + L GK ILD G GGYSR + G+ V A+D F ++ ++ + Sbjct: 35 TLQQLGNVSGKRILDLGCGEGGYSRELAQRGALVTAIDCSEFFINYSTNKAKEQGLHITH 94 Query: 88 FQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 F L D + ++ D ++ R + C Sbjct: 95 FIRNSCDLYDIQDNYFDIVLCSMMLMDCENLDGTVNEIARVLKSGGKVFASVLHPCFKGK 154 Query: 144 ASDVVNQANVKDLTRILGIL 163 + + N + + Sbjct: 155 DINWTGEGNESMVVFVKNYF 174 >gi|55379669|ref|YP_137519.1| methyltransferase [Haloarcula marismortui ATCC 43049] gi|55232394|gb|AAV47813.1| methyltransferase [Haloarcula marismortui ATCC 43049] Length = 252 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 28 VIALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 V+ LL+P PG+ +LD G G G+ + G+ V+ + D A Q F Sbjct: 25 VVDLLDPHPGEQVLD--VGCGTGHLTAEIADSGAEVVGI--DASAEMVAQARDAYPTLTF 80 Query: 86 SL 87 Sbjct: 81 EQ 82 >gi|148717309|dbj|BAF63640.1| hypothetical protein [Crassostrea gigas] Length = 342 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 46 GAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK 102 G G +SR K+ + A+D D F++ ++ + + QL + +K Sbjct: 167 GFGKHSREVAKLYPRSKITAIDMDQFSIDNAKKELTKSGLKNIEYLCMKGGQLPEKWANK 226 Query: 103 GVDGVVFDLGVSSMQIDCGDRGF 125 ++ D+ S ++D +G Sbjct: 227 FDFVIINDVLHDSYEVDEILKGI 249 >gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568] gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568] Length = 429 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 + LL+P G+ ILD A GG + + +V+A+D D + +E ++ + Sbjct: 238 CVDLLDPQDGEQILD--LCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLRL 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q Q + DK D ++ D S+ + + Sbjct: 296 HAEVKQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Alteromonadales bacterium TW-7] gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Alteromonadales bacterium TW-7] Length = 431 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 1/98 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L P VILDA GG + + ++V+ALD D + ++ + L Sbjct: 242 FLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRIGLGADLQC 301 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 SQ + D+ D ++ D+ S+ + + Sbjct: 302 GDASQPHTWWDDEQFDRILLDVPCSATGVIRRHPDIKW 339 >gi|255085586|ref|XP_002505224.1| predicted protein [Micromonas sp. RCC299] gi|226520493|gb|ACO66482.1| predicted protein [Micromonas sp. RCC299] Length = 226 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 19/98 (19%) Query: 35 APGKVILDATFGAGGYSRSFCKMG--------------SNVIALDRDPFAVSCGQETMR- 79 PG ++DAT G G + + ++ V+A D A++ + +R Sbjct: 40 RPGDTVVDATMGNGWDTVALARILADLDASPAGDASKPGRVVAFDVQEDALTSTRARVRE 99 Query: 80 ----DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D + L + +++++V V V F+LG Sbjct: 100 MLTPDQASRVDLVLKSHERMEEHVRTDAVGVVCFNLGY 137 >gi|83748247|ref|ZP_00945273.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551] gi|207722880|ref|YP_002253314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|207743515|ref|YP_002259907.1| hypothetical protein RSIPO_01694 [Ralstonia solanacearum IPO1609] gi|83725088|gb|EAP72240.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551] gi|206588064|emb|CAQ18644.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|206594913|emb|CAQ61840.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 188 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 28 VIALLNPAPGK-VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 V+ P P +LD G G ++R G V LDRD A++ Sbjct: 18 VVRWAAPLPAGARVLDIACGRGRHARWLAARGLRVTGLDRDADALA 63 >gi|90581289|ref|ZP_01237086.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14] gi|90437528|gb|EAS62722.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14] Length = 294 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 23/144 (15%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDSQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAE--- 203 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 L+ Y+P G+ D+ V+++ R S + Sbjct: 204 -----RNGVSDNLELYLPQDQPQGIQADVVVANILAG-PLRELSPVIKSLVKDGGD---- 253 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 ++ + +E Sbjct: 254 ---LAISGVLESQAADVSTYYSDE 274 >gi|125974460|ref|YP_001038370.1| methyltransferase type 11 [Clostridium thermocellum ATCC 27405] gi|256005184|ref|ZP_05430152.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360] gi|281418987|ref|ZP_06250005.1| Methyltransferase type 11 [Clostridium thermocellum JW20] gi|125714685|gb|ABN53177.1| Methyltransferase type 11 [Clostridium thermocellum ATCC 27405] gi|255990838|gb|EEU00952.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360] gi|281407444|gb|EFB37704.1| Methyltransferase type 11 [Clostridium thermocellum JW20] gi|316941597|gb|ADU75631.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313] Length = 244 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I PG ILD G+GGYS K G V A+D + V ++ + + F Sbjct: 25 IKNCAGKPGGKILDVACGSGGYSVELAKEGYLVTAVDIEEEMVEKVKKKASENGLSINAF 84 Query: 89 QATFSQLQDYVPDKGVDGVVF 109 + +L+ + ++ Sbjct: 85 KCDMRELEKKIGERFDTIFCI 105 >gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252] gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252] Length = 246 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 26 EKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 E+V+ L+ PAPG ILD G G ++R + G V +D A+ +E Sbjct: 26 EQVVDLIERLVRPAPGSEILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERAEAE 85 Query: 82 K 82 Sbjct: 86 G 86 >gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Pseudoalteromonas haloplanktis TAC125] Length = 431 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L P ILDA GG + + + V+ALD D + ++ + L Sbjct: 242 FLEPKDDDTILDACAAPGGKTCHILELADAEVLALDSDATRLERVKQNLTRIGLGADLQC 301 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 SQ + +K D ++ D+ S+ + + Sbjct: 302 GDASQPHTWWDEKQFDRILLDVPCSATGVIRRHPDIKW 339 >gi|146319324|ref|YP_001199036.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33] gi|146321528|ref|YP_001201239.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33] gi|223934023|ref|ZP_03625977.1| putative rRNA methylase [Streptococcus suis 89/1591] gi|253752355|ref|YP_003025496.1| rRNA methylase [Streptococcus suis SC84] gi|253754181|ref|YP_003027322.1| rRNA methylase [Streptococcus suis P1/7] gi|253756115|ref|YP_003029255.1| rRNA methylase [Streptococcus suis BM407] gi|302024304|ref|ZP_07249515.1| rRNA methylase [Streptococcus suis 05HAS68] gi|330833292|ref|YP_004402117.1| SAM-dependent methyltransferase [Streptococcus suis ST3] gi|145690130|gb|ABP90636.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33] gi|145692334|gb|ABP92839.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33] gi|223897312|gb|EEF63719.1| putative rRNA methylase [Streptococcus suis 89/1591] gi|251816644|emb|CAZ52285.1| putative rRNA methylase [Streptococcus suis SC84] gi|251818579|emb|CAZ56413.1| putative rRNA methylase [Streptococcus suis BM407] gi|251820427|emb|CAR47091.1| putative rRNA methylase [Streptococcus suis P1/7] gi|292558957|gb|ADE31958.1| Putative rRNA methylase [Streptococcus suis GZ1] gi|319758759|gb|ADV70701.1| SAM-dependent methyltransferase [Streptococcus suis JS14] gi|329307515|gb|AEB81931.1| SAM-dependent methyltransferase [Streptococcus suis ST3] Length = 184 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 41 LDATFGAGGYSRSFC-KMGSNVIALDRDPFAV-SCGQETMRDYKEQFSLFQATFSQLQDY 98 +DAT G G+ F + V+A D A+ + ++ + L L Y Sbjct: 23 VDATMGN-GHDTLFLAQRAGKVVAFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQY 81 Query: 99 VPDKGVDGVVFDLGV 113 V + +F+LG Sbjct: 82 VDE--CKAAIFNLGY 94 >gi|319951686|ref|YP_004162953.1| fmu (sun) domain protein [Cellulophaga algicola DSM 14237] gi|319420346|gb|ADV47455.1| Fmu (Sun) domain protein [Cellulophaga algicola DSM 14237] Length = 408 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG+ ++D GAGG + + + +IA+D Sbjct: 216 VAEFLDVKPGQRVIDTCAGAGGKTLHIAALMENKGQLIAMD 256 >gi|289165160|ref|YP_003455298.1| methyltransferase [Legionella longbeachae NSW150] gi|288858333|emb|CBJ12201.1| putative methyltransferase [Legionella longbeachae NSW150] Length = 261 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 3/138 (2%) Query: 37 GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFS 93 + ILD G G + + + VI LD+D + Q + S + Sbjct: 38 DESILDVGCGDGKITAAIANLVPNGKVIGLDKDITTIKFAQAKFQPTNHNNLSFLHGDVT 97 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 Q+ + + V + + +++G + + + + D +N+ + Sbjct: 98 QISELGKFDLIVSFSCLHFVKDQYTALINIRNNLKENGHIILMLYRKCKAQWDALNKTSA 157 Query: 154 KDLTRILGILGEEKQASR 171 + Sbjct: 158 NKKWSHYFENYDLGYYEY 175 >gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14] gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14] Length = 426 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + E + Sbjct: 235 AVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ A + + D ++ D S+ + + Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKW 336 >gi|148236727|ref|NP_001085693.1| trimethylguanosine synthase 1 [Xenopus laevis] gi|49119211|gb|AAH73206.1| MGC80481 protein [Xenopus laevis] Length = 837 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +++DA G GG + F K G+ VIA+D DP + + Y Sbjct: 681 GLVVDAFCGVGGNAIQFAKAGNRVIAVDIDPAKLDFARNNAEVYG 725 >gi|311106099|ref|YP_003978952.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter xylosoxidans A8] gi|310760788|gb|ADP16237.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter xylosoxidans A8] Length = 668 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 39/173 (22%), Gaps = 5/173 (2%) Query: 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA-TFSQLQDYVPDKGVDGVV 108 + + K V A DRD A + + + Q T + + Sbjct: 6 HIQHILKRDGRVAAFDRDKIAQAMAAAGQSTGELDLAGAQTLTDGVIAALAGNPCPGVET 65 Query: 109 FDLGV--SSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEE 166 V + +Q ++ R+ + DV + R + Sbjct: 66 IQNRVEEALVQAGHWRTARAYIVHREQHARLRSLRHTLVDVESAMEEYLDQRDWRVNANA 125 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH-PATRSFQALR 218 Q + I+ + + + IH Sbjct: 126 NQGYSLGGLILN-VAGKVTANYWLSNVFAPEAGRAHREGDIHIHDLDMLSGYC 177 >gi|294793728|ref|ZP_06758865.1| putative rRNA methylase [Veillonella sp. 3_1_44] gi|294455298|gb|EFG23670.1| putative rRNA methylase [Veillonella sp. 3_1_44] Length = 191 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 39 VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 V++DAT G G+ + + ++ +D A+ +E ++ + Sbjct: 24 VVVDATCGN-GHDLLYLSKRAQKACHLYGIDIQMKAIKTSKELLQSNDIAPEVSLTFIHD 82 Query: 95 LQDYVPDKGVDGVVFDL 111 D + V DL Sbjct: 83 SHDLAVAHQLKDEVIDL 99 >gi|282850215|ref|ZP_06259594.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294791867|ref|ZP_06757015.1| SAM-dependent methyltransferase, MraW methylase family [Veillonella sp. 6_1_27] gi|282579708|gb|EFB85112.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294457097|gb|EFG25459.1| SAM-dependent methyltransferase, MraW methylase family [Veillonella sp. 6_1_27] Length = 191 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 39 VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 V++DAT G G+ + + ++ +D A+ +E ++ + Sbjct: 24 VVVDATCGN-GHDLLYLSKRAQKACHLYGIDIQMKAIKTSKELLQSNDIAPEVSLTFIHD 82 Query: 95 LQDYVPDKGVDGVVFDL 111 D + V DL Sbjct: 83 SHDLAVAHQLKDEVIDL 99 >gi|330443800|ref|YP_004376786.1| rRNA methylase [Chlamydophila pecorum E58] gi|328806910|gb|AEB41083.1| rRNA methylase [Chlamydophila pecorum E58] Length = 193 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%) Query: 34 PAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRD 80 PG ++DAT G G S + ++ D A+ Q+ Sbjct: 24 VVPGDTVVDATCGRGLDSLVLARLLQGEGKLVVYDIQQEALESAQKLFMH 73 >gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] Length = 476 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 V+ LL+P PG +++D GG S K VIA+D Sbjct: 275 VVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315 >gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] Length = 476 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 V+ LL+P PG +++D GG S K VIA+D Sbjct: 275 VVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315 >gi|255039364|ref|YP_003089985.1| Methyltransferase type 11 [Dyadobacter fermentans DSM 18053] gi|254952120|gb|ACT96820.1| Methyltransferase type 11 [Dyadobacter fermentans DSM 18053] Length = 243 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIA 63 K +TM + HV ++VI I+D G G Y+ SF G V Sbjct: 22 KIKQTMIPVSSPYVRRHV----KEVIDFAGIKKSDRIIDVACGMGKYTLSFLAQGYKVEG 77 Query: 64 LD 65 LD Sbjct: 78 LD 79 >gi|254172289|ref|ZP_04878965.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] gi|214034185|gb|EEB75011.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] Length = 443 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +L+P PG+ ++D GG + + A D D + ++ +R + + Sbjct: 245 ILSPEPGETVVDLAAAPGGKTAHMAELMGNEGKIYAFDIDSERIKRMRQILRWAGVEIAE 304 Query: 88 FQA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ D V+ D +S + ++ Sbjct: 305 VRKLDGRKAPEVLGEEIADRVLLDAPCTSDGTIAKNPELRWR 346 >gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489] Length = 403 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 L+ PG+ ++D GAGG + + + +IALD Sbjct: 218 HFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQLIALD 256 >gi|145590568|ref|YP_001152570.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514] gi|145282336|gb|ABP49918.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514] Length = 165 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%) Query: 24 LLEKV---IALLNPAPGKVILDATFGAG-GYS-RSFCKMGSNVIALDRDP 68 +L++V + L+ G+ ++D GAG GYS R G V A+D DP Sbjct: 1 MLDEVFADLDSLDL--GQSVVD--IGAGFGYSTRYLLSRGLRVCAVDVDP 46 >gi|89075352|ref|ZP_01161774.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34] gi|89048901|gb|EAR54470.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34] Length = 294 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 23/144 (15%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAEKVIGIDIDPQAILASRDNAE--- 203 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 L+ Y+P G+ D+ V+++ R S + Sbjct: 204 -----RNGVSDNLELYLPQDQPQGIQADIVVANILAG-PLRELSPVIKSLVKDGGD---- 253 Query: 143 SASDVVNQANVKDLTRILGILGEE 166 ++ + +E Sbjct: 254 ---LAISGVLESQAADVSTYYSDE 274 >gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] Length = 472 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 +L+P PG ++D GG + K + A D D + + +R Sbjct: 273 ILDPKPGMTVVDLAAAPGGKTSHIAELMKNHGRIYAFDIDRVRIKRMRMILRRMGITIVR 332 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +F+ + + ++ D V+ D +S + ++ Sbjct: 333 IFEKDAREAPRILGEEIADRVLLDAPCTSTGTIAKNPELRWR 374 >gi|290968314|ref|ZP_06559856.1| rRNA methylase family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781673|gb|EFD94259.1| rRNA methylase family protein [Megasphaera genomosp. type_1 str. 28L] Length = 190 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 9/82 (10%) Query: 39 VILDATFGAGGYSRSFC-KMGS---NVIALDRDPFAVSCGQETMRD---YKEQFSLFQAT 91 +++D T G G+ F + + + A D AV ++ ++ + EQ L Q + Sbjct: 25 IVVDMTCGN-GHDTLFLRERLAPRATLYAFDIQEPAVQATKKRLQQAGKWDEQVILRQGS 83 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 +L ++ D +D VF+LG Sbjct: 84 HEKLI-HMIDAEIDICVFNLGY 104 >gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] Length = 282 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 D T G GG +R+ G+ VIA++RD A+ +E R Y + + Sbjct: 48 DVTVIEIGPGPGGLTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHG 102 >gi|169840261|ref|ZP_02873449.1| hypothetical protein cdivTM_24525 [candidate division TM7 single-cell isolate TM7a] Length = 28 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Query: 289 TKKVV-VPTQEDVAFNRRSRSAKLRAGMR 316 KK + T + A+N RSRSAKLR ++ Sbjct: 1 NKKPLDGATYD--AYNPRSRSAKLRGALK 27 >gi|17562972|ref|NP_504045.1| hypothetical protein R08E5.3 [Caenorhabditis elegans] gi|1938442|gb|AAB52277.1| Hypothetical protein R08E5.3 [Caenorhabditis elegans] Length = 365 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 8 TMSSAIHHTIGDHVPV--LL----EKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGS- 59 TMS A+H HV V +L V+ L G V +LD G G +S + Sbjct: 146 TMSQALHE---KHV-VADMLPDIGNGVVEKLE--AGGVRVLDVGCGGGFHSSLLAEQYPK 199 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQF---SLFQATFSQLQDYVPDKGVDGVVFD 110 + + LD A+ ++ F + ++ + D ++FD Sbjct: 200 SHFVGLDIGEDAIRQAKQRKTKSGAAFNNLEFIECDAGKMPEIWTDSFDLVLIFD 254 >gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2] gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2] Length = 451 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 LNP PG++++D GG + K + A D D + +E ++ + Sbjct: 257 LNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFDIDKMRMKRLKEFVQRMGIKIVKP 316 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + ++ D V+ D +S + ++ Sbjct: 317 IIKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWR 357 >gi|206561759|ref|YP_002232524.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia J2315] gi|226710058|sp|B4E5V2|PRMA_BURCJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|198037801|emb|CAR53745.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia J2315] Length = 300 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 28 VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82 + L + PG+ +LD +G G + VI +D DP AV ++ + Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212 Query: 83 EQFSL 87 + + Sbjct: 213 AEVTY 217 >gi|170731925|ref|YP_001763872.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia MC0-3] gi|226710057|sp|B1JVC0|PRMA_BURCC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|169815167|gb|ACA89750.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia MC0-3] Length = 300 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 28 VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82 + L + PG+ +LD +G G + VI +D DP AV ++ + Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212 Query: 83 EQFSL 87 + + Sbjct: 213 AEVTY 217 >gi|254246385|ref|ZP_04939706.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184] gi|124871161|gb|EAY62877.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184] Length = 300 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 28 VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82 + L + PG+ +LD +G G + VI +D DP AV ++ + Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212 Query: 83 EQFSL 87 + + Sbjct: 213 AEVTY 217 >gi|107021680|ref|YP_620007.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia AU 1054] gi|116688626|ref|YP_834249.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia HI2424] gi|123072432|sp|Q1BZC1|PRMA_BURCA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|166223397|sp|A0K4C9|PRMA_BURCH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|105891869|gb|ABF75034.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116646715|gb|ABK07356.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Burkholderia cenocepacia HI2424] Length = 300 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 28 VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82 + L + PG+ +LD +G G + VI +D DP AV ++ + Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNR 212 Query: 83 EQFSL 87 + + Sbjct: 213 AEVTY 217 >gi|253576645|ref|ZP_04853973.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844059|gb|EES72079.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 198 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 10/83 (12%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ-------FSLFQA 90 +DAT G G + K V A D P A++ + + A Sbjct: 25 VDATAGTGADTLFLAKACGPKGRVFAFDIQPQALALTKARLDKEPADSIAGVTLLQASHA 84 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + + + V+F+LG Sbjct: 85 DMAAVLPADVHGRLGAVMFNLGY 107 >gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] Length = 422 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 26 EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 ++ LL P + ILD A GG + ++ +V+A+D D ++ +E + Sbjct: 236 QRCAELLAPQNNEQILD--LCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRL 293 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 K ++ + + + D ++ D S+ + + Sbjct: 294 KLHATVKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320] gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis HI4320] Length = 422 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 26 EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 ++ LL P + ILD A GG + ++ +V+A+D D ++ +E + Sbjct: 236 QRCAELLAPQNNEQILD--LCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRL 293 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 K ++ + + + D ++ D S+ + + Sbjct: 294 KLHATVKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|320094507|ref|ZP_08026280.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978570|gb|EFW10140.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon 178 str. F0338] Length = 271 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 G GG + + +G V+A+DRD A + +R + Sbjct: 108 GVGGDALAIAGLGLRVLAVDRDQDASAAAAINLRHFD 144 >gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum] Length = 425 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 28 VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 +L P P ILD T + + K ++A+D+ P V+ ++ Sbjct: 221 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 275 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + Q ++L D + D ++ D S Sbjct: 276 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 310 >gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum] Length = 516 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 28 VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 +L P P ILD T + + K ++A+D+ P V+ ++ Sbjct: 312 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 366 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + Q ++L D + D ++ D S Sbjct: 367 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 401 >gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] Length = 359 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 V LLNP P ILD G G YS + +V+A D V ++ + Y + Sbjct: 167 VTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQKRYADHIEF 226 Query: 88 F 88 Sbjct: 227 C 227 >gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 431 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L+P G ILDA GG + + ++V+ALD D + ++ + L Sbjct: 242 YLDPQNGDSILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERIGLGADLQC 301 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 SQ + ++ D ++ D+ S+ + + Sbjct: 302 GDASQPHTWWDEEQFDRILLDVPCSATGVIRRHPDIKW 339 >gi|162457317|ref|YP_001619684.1| methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161167899|emb|CAN99204.1| Methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 792 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L G VILD GAGG++ G +V+ D ++ + +D ++ + Q Sbjct: 579 ERLGVEKGAVILDLACGAGGHAIEIASRGYSVVGYDLSLAMLARAADEAQDRGQKLNFLQ 638 Query: 90 ATFSQL 95 ++ Sbjct: 639 GDMREM 644 >gi|86159623|ref|YP_466408.1| type 12 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776134|gb|ABC82971.1| Methyltransferase type 12 [Anaeromyxobacter dehalogenans 2CP-C] Length = 198 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L ++ L P LD G G ++ G V +D P A++ ++ D Sbjct: 25 LSALVEGLRARPPGRALDLGCGRGAHAVYLASHGWKVTGVDLVPAALAKARQRATDAGVD 84 Query: 85 FSLFQATFSQLQDY 98 ++L Sbjct: 85 VQFLDGDVTRLDTL 98 >gi|302539087|ref|ZP_07291429.1| methyltransferase [Streptomyces sp. C] gi|302447982|gb|EFL19798.1| methyltransferase [Streptomyces sp. C] Length = 253 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 5/129 (3%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ----- 89 PG +LDA G G ++ G V+ +DRD + +E Q Sbjct: 45 QPGSRLLDAPCGHGRHANVLASRGYRVVGVDRDERFLEMAREESVKMGVAVDYRQVDLRE 104 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVN 149 F + D FD + R LDM I + + Sbjct: 105 MAFEEEFDAAVSWYSSFGYFDDETDRDILRRYRRALRPGGRFLLDMHSPYRHIPSVLANH 164 Query: 150 QANVKDLTR 158 +V L R Sbjct: 165 DMHVDVLRR 173 >gi|288549259|gb|ADC52819.1| putative L-glutaminyl-2-N-methyltransferase [Streptomyces platensis] Length = 253 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 PG +LDA G G ++ G V+ +DRD ++ + Q ++ Sbjct: 46 PGMDLLDAPCGHGRHANVLASRGYRVVGIDRDERFLAMARNEAEKTGAQVDYRHVDLREM 105 Query: 96 -----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ 150 D FD + R LDM I + + Sbjct: 106 SFAAEFDAAVSWYSSFGYFDDDTDRDILRRYRRALRPGGRFLLDMHSPYRHIPSVLANHD 165 Query: 151 ANVKDLTR 158 +V L R Sbjct: 166 MHVDILRR 173 >gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae] Length = 426 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 6/109 (5%) Query: 26 EKVIALLNPAPGKVILDATFGA--GGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81 ++ + LL P G+ ILD A GG + ++ V+A+D D + QE + Sbjct: 236 QRCVELLAPKNGEYILD--LCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNRV 293 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 K + + +++ D ++ D S+ + + + Sbjct: 294 KLHARVIVGDGRKPLEWISGAKFDRILLDAPCSATGVIRRHPDIKWLRK 342 >gi|114320671|ref|YP_742354.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227065|gb|ABI56864.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1] Length = 194 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 10/82 (12%) Query: 41 LDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK-----EQFSLFQAT 91 +DAT G G+ F +V A D P A++ ++ +R + T Sbjct: 25 VDATAGN-GHDTVFLADQVGASGHVWAFDIQPTALAATRQRLRARGLASRATLVAAGHET 83 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 ++ G+ V+F+LG Sbjct: 84 LAEHLPPQVQGGLAAVMFNLGY 105 >gi|300775571|ref|ZP_07085432.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910] gi|300505598|gb|EFK36735.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910] Length = 401 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 L+ G+ ++DA GAGG + + K +IALD + ++ + + Sbjct: 219 FLDVKEGQRVVDACAGAGGKTLHLAALMKNKGQIIALDIFDWKLAELKRRAKRAGAHNIE 278 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144 + + D ++ D S + + + ++ R+ Sbjct: 279 TRMISDNKVIKRLHEKADRLLIDAPCSGLGVLKRNPDSKWKIDQDFIDRIKKEQQQI 335 >gi|254247810|ref|ZP_04941131.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124872586|gb|EAY64302.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 200 Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 G +LD G G ++ F G V+ALDRDP A++ + Sbjct: 32 GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAALRAI 72 >gi|107028724|ref|YP_625819.1| methyltransferase type 12 [Burkholderia cenocepacia AU 1054] gi|116690117|ref|YP_835740.1| methyltransferase type 12 [Burkholderia cenocepacia HI2424] gi|105897888|gb|ABF80846.1| Methyltransferase type 12 [Burkholderia cenocepacia AU 1054] gi|116648206|gb|ABK08847.1| Methyltransferase type 12 [Burkholderia cenocepacia HI2424] Length = 200 Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 G +LD G G ++ F G V+ALDRDP A++ + Sbjct: 32 GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAALRAI 72 >gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio coralliilyticus ATCC BAA-450] gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio coralliilyticus ATCC BAA-450] Length = 426 Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + + ++A+D D + + ++ + + Sbjct: 235 SINYLTPKDGELILDCCAAPGGKTAHILERTQDAQIVAIDCDDSRLKRVHDNLQRLQLKA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + +D+ + D ++ D S+ + + Sbjct: 295 QVICGDARKPKDWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|90019826|ref|YP_525653.1| hypothetical protein Sde_0177 [Saccharophagus degradans 2-40] gi|89949426|gb|ABD79441.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 260 Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 16/72 (22%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVI--------ALDRDP 68 PV +V+A PG ++D G GGY +V +D Sbjct: 55 KPV---EVLAFSGVKPGDKVIDL-LGGGGYYTELLSHVVGADGHVYLVNSPLFVNFTKDQ 110 Query: 69 FAVSCGQETMRD 80 A +++ Sbjct: 111 IAERLANNRLKN 122 >gi|78065162|ref|YP_367931.1| ribosomal protein L11 methyltransferase [Burkholderia sp. 383] gi|123569367|sp|Q39JS9|PRMA_BURS3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|77965907|gb|ABB07287.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Burkholderia sp. 383] Length = 300 Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 28 VIALL--NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82 + L + PG+ +LD +G G + VI +D DP AV ++ Sbjct: 155 CMEWLEQSVKPGQSVLD--YGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNH 212 Query: 83 EQFSL 87 + Sbjct: 213 ADVTY 217 >gi|327404248|ref|YP_004345086.1| type 11 methyltransferase [Fluviicola taffensis DSM 16823] gi|327319756|gb|AEA44248.1| Methyltransferase type 11 [Fluviicola taffensis DSM 16823] Length = 255 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ------------- 75 +A L PA LD GAG +SR+ G +V D P ++ + Sbjct: 48 VAYLKPAQNSTALDLACGAGRHSRALASHGLHVSGCDLSPNSIEEAKRVSDSSLTFFVHD 107 Query: 76 --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 E + + + +F +D + V ++D Sbjct: 108 MREKLDNQYQYVFNLFTSFGYFEDISQNALVLKSIYD 144 >gi|330830946|ref|YP_004393898.1| ribosomal protein L11 methyltransferase [Aeromonas veronii B565] gi|328806082|gb|AEB51281.1| Ribosomal protein L11 methyltransferase [Aeromonas veronii B565] Length = 292 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 12/60 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFC-----KMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ A GK ++D FG G K+G+ VI +D DP A+ ++ Sbjct: 150 LDGLDLA-GKTVVD--FGCG---SGILGIAALKLGAARVIGIDIDPQAIQASRDNAARNG 203 >gi|312143433|ref|YP_003994879.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus'] gi|311904084|gb|ADQ14525.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus'] Length = 255 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 24 LLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 LL++ + L + +LD G G Y+ + G VI +D D ++ + Sbjct: 24 LLDQTFSYLKNDKKQTKLLDVGCGTGSYAVALAGKGYQVIGIDLDSEMIALAKNKQA 80 >gi|269103647|ref|ZP_06156344.1| ribosomal protein L11 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163545|gb|EEZ42041.1| ribosomal protein L11 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 294 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNG 206 >gi|198282338|ref|YP_002218659.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246859|gb|ACH82452.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 202 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 VI L PG +LD G G ++ + + ++ D D ++ + Sbjct: 31 VIRALGVKPGITVLDLCCGDGYFTAALARQVEDGRILGFDLDEQMLAAAASVCAGLENC- 89 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFD 110 + Q L +P+ ++ + Sbjct: 90 TFLQGDAMALHRLLPEPVDYCLMAN 114 >gi|169841872|ref|ZP_02874981.1| Methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 78 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162 VD ++ D+GVSS Q+D RGFS++ LDMRM S ISA +VVN + K++ I+ Sbjct: 9 VDRILMDIGVSSNQLDNAKRGFSYRFEARLDMRMDSSLKISAYEVVNDFSEKEIADIIYK 68 Query: 163 LGEEKQASRI 172 GEE ++ +I Sbjct: 69 YGEEPKSRKI 78 >gi|115352184|ref|YP_774023.1| type 12 methyltransferase [Burkholderia ambifaria AMMD] gi|115282172|gb|ABI87689.1| Methyltransferase type 12 [Burkholderia ambifaria AMMD] Length = 200 Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 23/41 (56%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 G +LD G G ++R F G V+ALDRDP +++ + Sbjct: 32 GGAVLDVAAGGGRHARWFASHGHPVVALDRDPASLAALRAI 72 >gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34] gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34] Length = 426 Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P ++ILD GG + + + V+A+D D + E + Sbjct: 235 AVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ A + + D ++ D S+ + + Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKW 336 >gi|328953125|ref|YP_004370459.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans DSM 11109] gi|328453449|gb|AEB09278.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans DSM 11109] Length = 298 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 12/60 (20%) Query: 25 LEKVIALLNPAPGKVILD-ATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSCGQETM 78 LE+V + P + +LD T G G ++G+ V+A+D DP A++ +E + Sbjct: 152 LEEVTYNWSQHPPRWVLDVGT-GTG-----ILGLAAARLGARVLAIDVDPEALAAARENI 205 >gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787] gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787] Length = 311 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 V LLNP P ILD G G YS + +V+A D V ++ + Y + Sbjct: 119 VTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQKRYADHIEF 178 Query: 88 F 88 Sbjct: 179 C 179 >gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] Length = 429 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 +A L P G+ ILD A GG + + V+A+D D +S + ++ Sbjct: 238 CVAFLAPQNGEQILD--LCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKRLGM 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ Q + ++ D ++ D S+ + + Sbjct: 296 NATVKQGDGRYPLQWCGEQQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|330444964|ref|ZP_08308618.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493082|dbj|GAA03115.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 294 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK I+D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGKTIID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNG 206 >gi|289167359|ref|YP_003445628.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6] gi|288906926|emb|CBJ21760.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6] Length = 440 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 23 VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + L+ ++DA T G +F K + +D P A+ + Sbjct: 276 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 330 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + F ++ +P +G D Sbjct: 331 AKRMG--FDNTHYEVGTAEEIIPRWYKEGYRAD 361 >gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + E + Sbjct: 235 AVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ A + + D ++ D S+ + + Sbjct: 295 TVLCADARYPEQWWKGDKFDRILLDAPCSATGVIRRHPDIKW 336 >gi|312144062|ref|YP_003995508.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904713|gb|ADQ15154.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 389 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL ++ + K I D G+G S+S + +D D A++ +E Sbjct: 232 VLYKEAKKYIKNPDAKTIYDLYCGSGTISQSIADNAKKIYGIDIDEEAINRAREN 286 >gi|257469878|ref|ZP_05633970.1| Transcriptional regulator (ArsR family) protein [Fusobacterium ulcerans ATCC 49185] gi|317064107|ref|ZP_07928592.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689783|gb|EFS26618.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 251 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 ++I LL +VI D G GG++ + VIA+DR Sbjct: 18 EIIELLPIEDNQVIADLGCGTGGFTEIISEKVRQVIAVDR 57 >gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 429 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 +A L P G+ ILD A GG + + +V+A+D D +S + ++ Sbjct: 238 CVAFLAPQNGEHILD--LCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKRLGM 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ Q + ++ D ++ D S+ + + Sbjct: 296 KATVKQGDGRYPAQWCDEQQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|163848211|ref|YP_001636255.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222526119|ref|YP_002570590.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl] gi|163669500|gb|ABY35866.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl] gi|222449998|gb|ACM54264.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl] Length = 271 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 27/85 (31%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I L + +LD G G +S + G V+ LD ++ Q D Sbjct: 38 IDALGLRGVETVLDVACGGGRHSLALAARGWTVVGLDAAASVIAHAQAAATDQGLNVEFV 97 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 QL + V + LG Sbjct: 98 TGDMRQLPYHERFDVVLLMNSSLGF 122 >gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium damselae subsp. damselae CIP 102761] gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium damselae subsp. damselae CIP 102761] Length = 308 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + + V+A+D D ++ + ++ Q Sbjct: 118 AIEYLQPQAGELILDCCAAPGGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQA 177 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + A + + D ++ D S+ + + Sbjct: 178 KVLCADARYPEKWWDGDKFDRILLDAPCSATGVIRRHPDIKW 219 >gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602] gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602] Length = 429 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G++ILD GG + + +V+A+D D + E ++ K Sbjct: 238 SVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQRLKLSA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + Q + Q + D+ D ++ D S+ + + Sbjct: 298 EVKQGDGREPQMWAGDRIFDRILLDAPCSATGVIRRHPDIKW 339 >gi|117620314|ref|YP_857842.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166223392|sp|A0KNJ1|PRMA_AERHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|117561721|gb|ABK38669.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 292 Score = 37.4 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 12/60 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFC-----KMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ A GK ++D FG G K+G+ VI +D DP A+ ++ Sbjct: 150 LDGLDLA-GKTVVD--FGCG---SGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNG 203 >gi|281411985|ref|YP_003346064.1| glycosyl transferase family 2 [Thermotoga naphthophila RKU-10] gi|281373088|gb|ADA66650.1| glycosyl transferase family 2 [Thermotoga naphthophila RKU-10] Length = 1044 Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 1/137 (0%) Query: 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102 T G G +S ++V +D DP ++ +DY + F+ Sbjct: 522 GT-GTGAFSIELALREADVTGIDIDPTSIELAIRISKDYNVENVEFKVGDGFKLTESFKP 580 Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162 + F++GV D Q + S S V A Sbjct: 581 QEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTAKETAQKLGAWE 640 Query: 163 LGEEKQASRIAHAIVKR 179 G E+ + I + Sbjct: 641 YGFERDFLTLEPLIRRA 657 >gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] Length = 283 Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFS 86 G GG +R+ G+ VIA++RDP A+ E Y + + Sbjct: 56 GPGGLTRALLAEGAARVIAIERDPRALPALAEIAAHYPGRLT 97 >gi|320105974|ref|YP_004181564.1| type 11 methyltransferase [Terriglobus saanensis SP1PR4] gi|319924495|gb|ADV81570.1| Methyltransferase type 11 [Terriglobus saanensis SP1PR4] Length = 202 Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMR 79 L ++++ N PG ILDA GY R + G V ALD DP AV ++ Sbjct: 15 LFDQILRG-NILPGMRILDA---GCGYGRNLVHLLREGCEVFALDADPAAVEHVRQLSA 69 >gi|302756219|ref|XP_002961533.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii] gi|300170192|gb|EFJ36793.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii] Length = 205 Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 V++DA G GG + F +VIA+D+DP ++ + Y + F QL Sbjct: 45 VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQL 103 >gi|302775726|ref|XP_002971280.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii] gi|300161262|gb|EFJ27878.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii] Length = 205 Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 V++DA G GG + F +VIA+D+DP ++ + Y + F QL Sbjct: 47 VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQL 105 >gi|15643519|ref|NP_228565.1| galactosyltransferase-related protein [Thermotoga maritima MSB8] gi|4981283|gb|AAD35838.1|AE001745_5 galactosyltransferase-related protein [Thermotoga maritima MSB8] Length = 1044 Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 1/137 (0%) Query: 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102 T G G +S ++V +D DP ++ +DY + F+ Sbjct: 522 GT-GTGAFSIELALREADVTGIDIDPTSIELAIRISKDYNVENVEFKVGDGFKLTESFKP 580 Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162 + F++GV D Q + S S V A Sbjct: 581 QEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTAKETAQKLGAWE 640 Query: 163 LGEEKQASRIAHAIVKR 179 G E+ + I + Sbjct: 641 YGFERDFLTLEPLIRRA 657 >gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT] gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT] Length = 328 Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 PG +++D G G +S K G+ VIA+D++P A +E R + + + Sbjct: 163 QVRPGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLDVEIREGDA 222 Query: 93 SQLQD 97 S L + Sbjct: 223 SSLTE 227 >gi|148269317|ref|YP_001243777.1| glycosyl transferase family protein [Thermotoga petrophila RKU-1] gi|147734861|gb|ABQ46201.1| glycosyl transferase, family 2 [Thermotoga petrophila RKU-1] Length = 991 Score = 37.0 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 1/137 (0%) Query: 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102 T G G +S ++V +D DP ++ +DY + F+ Sbjct: 522 GT-GTGAFSIELALREADVTGIDIDPTSIELAIRISKDYNVENVEFKVGDGFKLTESFKP 580 Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGI 162 + F++GV D Q + S S V A Sbjct: 581 QEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTAKETAQKLGAWE 640 Query: 163 LGEEKQASRIAHAIVKR 179 G E+ + I + Sbjct: 641 YGFERDFLTLEPLIRRA 657 >gi|307710372|ref|ZP_07646812.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564] gi|307618849|gb|EFN97985.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564] Length = 367 Score = 37.0 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 23 VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + L+ ++DA T G +F K + +D P A+ + Sbjct: 207 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 261 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + F ++ +P +G D Sbjct: 262 AKRMG--FDNTHYEAGTAEEIIPRWYKEGYRAD 292 >gi|195392497|ref|XP_002054894.1| GJ22549 [Drosophila virilis] gi|194152980|gb|EDW68414.1| GJ22549 [Drosophila virilis] Length = 466 Score = 37.0 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 G VI+DA G GG + F S VIA+D D ++ ++ Y + A F Q Sbjct: 297 GDVIVDAFCGCGGNAIQFANTCSRVIAIDIDANKLAMAKQNALIYGVAHKIEFVHADFLQ 356 Query: 95 L 95 Sbjct: 357 F 357 >gi|126180109|ref|YP_001048074.1| methyltransferase type 11 [Methanoculleus marisnigri JR1] gi|125862903|gb|ABN58092.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1] Length = 210 Score = 37.0 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAG-GY-SRSFCKM-GSNVIALDRDPFAVSCGQET 77 PV+ E+ +A + LD G+G G+ S + + ++IALD DP + T Sbjct: 20 YPVIAEQALAWSGIR-DGIALD--LGSGPGHLSVALAEKSNLSIIALDADPATSRIARTT 76 Query: 78 MRDYKEQFSLFQATFSQLQ 96 ++ + Sbjct: 77 AAGCGDRVIPVTGDVHCMP 95 >gi|326201088|ref|ZP_08190960.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] gi|325988656|gb|EGD49480.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] Length = 241 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 26 EKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 ++ + L P K +LD G GGYS + G NV A+D D V + ++ Sbjct: 19 KEQLDFLKEIAGKPPKSVLDIACGTGGYSLELDRRGYNVTAVDLDKEMVRRLEVKAKENN 78 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVF 109 + Q +LQ+ + D Sbjct: 79 QSVKFMQGNMLELQNKISDSFDLVFCI 105 >gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] Length = 287 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 D T G GG +R+ G+ VIA++RD A+ +E Y + + A + Sbjct: 48 DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|296164985|ref|ZP_06847540.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899633|gb|EFG79084.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 252 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L P ++D GAG ++ + G++V+A DRD + +R + Sbjct: 7 DRLGIGPATKVIDVGCGAGRHAFEAYRRGADVVAFDRDADELRAVDTILRAMAD 60 >gi|145223449|ref|YP_001134127.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK] gi|145215935|gb|ABP45339.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK] Length = 207 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 6/134 (4%) Query: 46 GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 G G ++ + V A+D DP + E + Y + L Q + + L + Sbjct: 47 GYG--TQLILERFGAATVDAVDLDPAMIRRAGERLARYGNRVRLVQGSATDLSTALDAGD 104 Query: 104 VDG-VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRIL-G 161 VFD G+ D + + R ++A + + + Sbjct: 105 GSYGAVFDFGIVHHIPDWRNAVAEVARVLAPGGRFYFDEVTAHALARPSYKRLFDHPTED 164 Query: 162 ILGEEKQASRIAHA 175 E+ + +AH Sbjct: 165 RFSAEQFSDELAHH 178 >gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] Length = 451 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 23 VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + L+ ++DA T G +F K + +D P A+ + Sbjct: 291 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 345 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + F ++ +P +G D Sbjct: 346 AKRMG--FDNIHYEAGTAEEIIPRWYKEGYRAD 376 >gi|197337515|ref|YP_002158416.1| biotin biosynthesis protein BioC [Vibrio fischeri MJ11] gi|197314767|gb|ACH64216.1| biotin biosynthesis protein BioC [Vibrio fischeri MJ11] Length = 273 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 42/165 (25%), Gaps = 5/165 (3%) Query: 52 RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 + K G+ V+A D + +E D+ + Q L + L Sbjct: 72 EALLKRGARVVAFDLSSVMLEKAKERCGDHN--ITYIQGDAEDLPFMDDEFDGVVSSLAL 129 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASR 171 + + + S ++ + DL + + S Sbjct: 130 QWCQDLSVPLREMRRISHNKSKVIFSTLLDGSLFELKKAWSKVDLYQHVNDF---ITPSM 186 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216 + A+ + + + + K+ + AT Sbjct: 187 VKIALAQSECNNFTLHCTSVEMTYSSALALMKDLKGIGATHLPNG 231 >gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] Length = 287 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 D T G GG +R+ G+ VIA++RD A+ +E Y + + A Sbjct: 48 DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|91784217|ref|YP_559423.1| hypothetical protein Bxe_A1584 [Burkholderia xenovorans LB400] gi|91688171|gb|ABE31371.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 199 Score = 37.0 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 A G +LD GAG ++R F +G V A+DRD A++ Sbjct: 25 VAAGGAVLDVACGAGRHARFFAALGHPVTAIDRDAAALA 63 >gi|75866785|gb|AAI05288.1| METT5D1 protein [Homo sapiens] Length = 99 Score = 37.0 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Query: 16 TIGD-HVPVLLEKVIALLNPAPGK 38 T+ H+PV++++V+ L+P G+ Sbjct: 67 TMAKLHIPVMVDEVVHCLSPQKGQ 90 >gi|89895091|ref|YP_518578.1| hypothetical protein DSY2345 [Desulfitobacterium hafniense Y51] gi|219669504|ref|YP_002459939.1| rRNA methylase [Desulfitobacterium hafniense DCB-2] gi|89334539|dbj|BAE84134.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539764|gb|ACL21503.1| putative rRNA methylase [Desulfitobacterium hafniense DCB-2] Length = 193 Score = 37.0 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 4/85 (4%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 + PG + LD T G G + + V A D A+ Q +++ + + Sbjct: 19 SIQPGDIALDLTAGRGRDTLFLAQLVGAEGRVHAFDVQEVALQETQRLLKEQQMAERVHL 78 Query: 90 ATFSQLQDYVP-DKGVDGVVFDLGV 113 + + V +F+LG Sbjct: 79 YHWDHGRLLEKVQDPVQAAMFNLGY 103 >gi|158315916|ref|YP_001508424.1| hypothetical protein Franean1_4131 [Frankia sp. EAN1pec] gi|158111321|gb|ABW13518.1| hypothetical protein Franean1_4131 [Frankia sp. EAN1pec] Length = 78 Score = 37.0 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 ILDAT G G Y+ + G+ +I D+ P V+ ++ Sbjct: 35 TILDATRGPGFYAEELTRRGARIIGFDQSPVMVALTRKL 73 >gi|308471212|ref|XP_003097837.1| hypothetical protein CRE_12932 [Caenorhabditis remanei] gi|308239142|gb|EFO83094.1| hypothetical protein CRE_12932 [Caenorhabditis remanei] Length = 362 Score = 37.0 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Query: 9 MSSAIHHTIGDH-VPVLLEKVIALL--NPAPGKV-ILDATFGAGGYSRSFCKMGS--NVI 62 MS A+H H +P ++ + + G V +LD G G +S + + + Sbjct: 143 MSQALHE---KHVIPDMIPAIGNGIVEKLESGGVRVLDVGCGGGFHSSLLAEQYPKAHFV 199 Query: 63 ALDRDPFAVSCGQETMRDYKEQF---SLFQATFSQLQDYVPDKGVDGVVFD 110 LD A++ ++ F + ++ + D ++FD Sbjct: 200 GLDIGADAINQAKKRKTKSGGIFNNLEFIECDAGKMPEIWTDSFDLVLIFD 250 >gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] Length = 455 Score = 37.0 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL + I + ++DA G G S +F K V A++ P A+ +E R + Sbjct: 294 VLYHEAIQAAGLTGDETVVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQ 353 >gi|21231131|ref|NP_637048.1| biotin synthesis protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768861|ref|YP_243623.1| biotin synthesis protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112767|gb|AAM40972.1| biotin synthesis protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574193|gb|AAY49603.1| biotin synthesis protein [Xanthomonas campestris pv. campestris str. 8004] Length = 236 Score = 37.0 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 20/169 (11%) Query: 20 HVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAV 71 H PV+L + A+L P + +LDA G+G R + + V +D P + Sbjct: 29 HNPVMLAEQRAMLALLPTDLRSQHVLDAGCGSG---RYMLQALQRGAAQVTGVDLSPEML 85 Query: 72 SCGQETMR--DYKEQFSLFQATFSQLQ--DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + FSL Q + QL D + D V G+V R + Sbjct: 86 QRAAHELAQRWPATCFSLQQGSLEQLPVADAMADITVCGLVVGHLPRLWTALEQLRRVTR 145 Query: 128 QKSGPLDMRMSCSGISA---SDVVNQANVKDLTRILGILGEEKQASRIA 173 L + G + D + + S A Sbjct: 146 IGGSVLCSDVHPIGHALGWRRDFKADGQHYAIRHTQHLYS--HWHSACA 192 >gi|323136513|ref|ZP_08071595.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylocystis sp. ATCC 49242] gi|322398587|gb|EFY01107.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylocystis sp. ATCC 49242] Length = 238 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPF--AVSCG 74 L +++ P PG+ LD G GYS + V+AL+ DP A + Sbjct: 86 LARLLQGAAPRPGEKALD--IGGAGYSAAILSGLVGEVVALESDPELAARARA 136 >gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] Length = 287 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 DAT G GG +R+ +G+ +VIA++RD A+ +E Y + ++ A + Sbjct: 48 DATVVEIGPGPGGLTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|331270275|ref|YP_004396767.1| hypothetical protein CbC4_2103 [Clostridium botulinum BKT015925] gi|329126825|gb|AEB76770.1| conserved hypothetical protein [Clostridium botulinum BKT015925] Length = 192 Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--- 57 M+ ++++++ L ++ IA+ + +DAT G G + + Sbjct: 1 MDDVEKNFLTNSMN---------LAKE-IAIKKLQHKDIAVDATMGNGNDTVFLASLVGD 50 Query: 58 GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 V + D A+ ++ + D K L + Y+ + V V+F+LG Sbjct: 51 SGTVYSFDVQKEAIDNTRKKIIDNEIKTNIQLIHDGHENIDKYINE-DVKLVMFNLGY 107 >gi|298705468|emb|CBJ28743.1| conserved unknown protein [Ectocarpus siliculosus] Length = 379 Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 ++ +G H+ + LL P G+ ILD G G + G V+ +D Sbjct: 62 NAGFVPELGKHL-------LDLLAPRDGERILDVGCGDGVLTAEIKARGCRVVGID 110 >gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895] gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895] Length = 428 Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 28 VIALLNPAPGKVILDATFGA--GGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 ++ L P G+ ILD A GG + + V+A+D D +S + ++ Sbjct: 237 CVSFLAPQNGEKILD--LCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKRLGM 294 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ Q + ++ D ++ D S+ + + Sbjct: 295 KATVKQGDGRYPAQWCGEQKFDRILLDAPCSATGVIRRHPDIKW 338 >gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1] gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1] Length = 449 Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 +L+P PG ++D GG + + A D D ++ ++ +R Sbjct: 252 ILDPKPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRTGVRNAR 311 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +++ + D + ++ D V+ D SS + ++ Sbjct: 312 IYREDSRKAPDILGEEIADRVLLDAPCSSDGTIMKNPDLRWR 353 >gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536] gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536] Length = 429 Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G+ ILD G GG + ++ V+A+D D +S + ++ + Sbjct: 238 CMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ Q + ++ D ++ D S+ + + Sbjct: 298 TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKW 339 >gi|163756471|ref|ZP_02163584.1| putative sun protein [Kordia algicida OT-1] gi|161323579|gb|EDP94915.1| putative sun protein [Kordia algicida OT-1] Length = 404 Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG ++D GAGG + + + N+I+LD Sbjct: 219 VSEFLDVKPGMKVVDTCAGAGGKSLHLAALMENKGNLISLD 259 >gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016] gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016] gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] Length = 426 Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + S V+ALD D + E ++ Q + Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + D ++ D S+ + + Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6] gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus CMCP6] Length = 426 Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + S V+ALD D + E ++ Q + Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + D ++ D S+ + + Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|319936445|ref|ZP_08010861.1| rRNA methylase [Coprobacillus sp. 29_1] gi|319808560|gb|EFW05112.1| rRNA methylase [Coprobacillus sp. 29_1] Length = 175 Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 39 VILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + +D T G G+ + + V A D A+ Q+ + ++ Sbjct: 20 IGVDMTMGN-GHDTLFLLQHCQKVYAFDIQRQAIEKTQKLIGYNRD 64 >gi|158320607|ref|YP_001513114.1| putative rRNA methylase [Alkaliphilus oremlandii OhILAs] gi|158140806|gb|ABW19118.1| putative rRNA methylase [Alkaliphilus oremlandii OhILAs] Length = 189 Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY---KEQFS 86 G + +DAT G G + + V + D A+ +E + ++ Sbjct: 18 KIKQGNIAIDATMGNGNDTVFLARSVGISGKVYSFDVQEIALRNTKEKITEHHLKGYDIQ 77 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + Y + VD V+F+LG Sbjct: 78 LINDGHENINQY-IEGLVDVVMFNLGY 103 >gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales bacterium HF0010_22E23] Length = 426 Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D ++ +E + Sbjct: 235 SVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGRLNLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ + D ++ D S+ + + Sbjct: 295 DVICGDARSPDEWWNGEDFDRILLDAPCSATGVIRRHPDIKW 336 >gi|196012774|ref|XP_002116249.1| hypothetical protein TRIADDRAFT_60151 [Trichoplax adhaerens] gi|190581204|gb|EDV21282.1| hypothetical protein TRIADDRAFT_60151 [Trichoplax adhaerens] Length = 313 Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 12/143 (8%) Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV-- 221 G I ++ + + + S + ++N L Sbjct: 172 GNPLPYIHTQIIIDRKSYKSEQTIARGIISSFAQLAAHAQNKDGKLGQSLKHPLCCQTII 231 Query: 222 -NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN- 279 N + + K L+ +++ S F+S +G++ + Sbjct: 232 TNGQQFTFMCYQLNTLKTNNIEKGLVNMAWASD----TMDLFSSYNGEIDINEKCLKYIA 287 Query: 280 ----AHPAVFQSITKKVVVPTQE 298 P F+ I KK V ++E Sbjct: 288 QFFVNKPIPFKVIKKKSVKASEE 310 >gi|327279228|ref|XP_003224359.1| PREDICTED: trimethylguanosine synthase-like [Anolis carolinensis] Length = 943 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93 +I+DA G GG S F G VIA+D DP + Y +Q F Sbjct: 782 KSDIIVDAFCGVGGNSIQFALAGKRVIAIDIDPVKIRLAHNNAEVYGVADQIEFICGDFM 841 Query: 94 QL 95 +L Sbjct: 842 KL 843 >gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 437 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86 LLN P + ILD GG + ++ + +A+D DP + +E + Q S Sbjct: 244 NLLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLTRLGHQAS 303 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 L S+ + + + D ++ D S+ I + + Sbjct: 304 LICGDASEPKAWWDGEQFDRILLDAPCSATGIIRRHPDIKWLRKS 348 >gi|294828297|ref|NP_713534.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar Lai str. 56601] gi|293386148|gb|AAN50552.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar Lai str. 56601] Length = 343 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%) Query: 45 FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQE 76 FG GG ++ + + VIALD D A+ + Sbjct: 171 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATK 207 >gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] Length = 286 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ +G+ VIA++RD A+ QE Y + + A Sbjct: 57 GPGGLTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCA 102 >gi|242243021|ref|ZP_04797466.1| rRNA methyltransferase [Staphylococcus epidermidis W23144] gi|242233479|gb|EES35791.1| rRNA methyltransferase [Staphylococcus epidermidis W23144] Length = 187 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 +++DAT G G + F + N V D A+ + ++DY Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKIKDYSNVKLIQSGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 +D +F+LG Sbjct: 78 ENAKLHIPAQYHGHIDAAIFNLGY 101 >gi|261403589|ref|YP_003247813.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus vulcanius M7] gi|261370582|gb|ACX73331.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus vulcanius M7] Length = 180 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I LN V++D G+GG + K V A+D A+ Q+ Sbjct: 13 VPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIAKRCKFVYAIDYLDDAIELTQQ 72 Query: 77 TMRDYK 82 + + Sbjct: 73 NLAKFN 78 >gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] Length = 287 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 DAT G GG +R+ MG+ VIA++RD A+ +E Y + ++ A +Q Sbjct: 48 DATVIEIGPGPGGLTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|304440266|ref|ZP_07400156.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371315|gb|EFM24931.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 181 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 41 LDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDY 98 +DAT G G + S K ++V + D A+ E ++ + +++++L + S + Y Sbjct: 23 VDATLGNGNDTYSILKYTDAHVTSFDIQEMALESSLEKLKTFSRDRYNLILDSHSNMDRY 82 Query: 99 VPDKGVDGVVFDLGV 113 + D D +VF+ G Sbjct: 83 LKD-SPDLIVFNTGY 96 >gi|120435407|ref|YP_861093.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii KT0803] gi|117577557|emb|CAL66026.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii KT0803] Length = 403 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 ++V LL+ PG ++D GAGG + + + +IALD Sbjct: 214 QRVAELLDVKPGMRVVDTCAGAGGKTLHLAALMENKGQIIALD 256 >gi|302870918|ref|YP_003839554.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor obsidiansis OB47] gi|302573777|gb|ADL41568.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor obsidiansis OB47] Length = 264 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCG-QETMRDYKEQFSLFQATFSQLQDY 98 + SF + G+ V A+D+D A+ Q+ +K++ + F+ + ++ Sbjct: 31 ALSFLENGAKVFAIDKDREAIEDASQDFFDKFKDRITFFECDLADAKEI 79 >gi|229845963|ref|ZP_04466075.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae 7P49H1] gi|229810967|gb|EEP46684.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae 7P49H1] Length = 254 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 19/169 (11%) Query: 22 PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L +++ LL GK +LD G GG+ + + K G + VI D + Sbjct: 24 PISLNEIVEKPTMLSLLPDLKGKKLLDLGCGTGGHLQLYLKRGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVV---------FDLGVSSMQIDCGD 122 ++ ++ +FSL+ +L + F ++S+ Sbjct: 84 EKDLQKCGQFSGRFSLYHLPMEKLAELPECHFDVITSSFAFHYIEDFPALLASIANKLKP 143 Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASR 171 G G + V GE + Sbjct: 144 NGILVFSQEHPITTCHKEGDRWEKNDKKQQVAYRLNHYREEGERNRNWF 192 >gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 278 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 G GG +R+ K G+ V A++RD + E + +Q + ++ + Sbjct: 56 GPGGLTRALLKAGAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEHV 115 Query: 106 GVVFDLGVSSMQIDCGDR 123 +V +L + Sbjct: 116 HIVANLPYNVGTALLIRW 133 >gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 440 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 V++ + +ALL P PG+ ILD G G ++ ++G+ V+ ++ D Sbjct: 281 VMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGD 325 >gi|125544200|gb|EAY90339.1| hypothetical protein OsI_11916 [Oryza sativa Indica Group] Length = 690 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 +++D G GG + F +VIA+D DP + C Q Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQ 550 >gi|115453397|ref|NP_001050299.1| Os03g0396900 [Oryza sativa Japonica Group] gi|14029021|gb|AAK52562.1|AC079853_15 Unknown protein [Oryza sativa Japonica Group] gi|108708634|gb|ABF96429.1| WW domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|113548770|dbj|BAF12213.1| Os03g0396900 [Oryza sativa Japonica Group] gi|215737194|dbj|BAG96123.1| unnamed protein product [Oryza sativa Japonica Group] gi|222625074|gb|EEE59206.1| hypothetical protein OsJ_11156 [Oryza sativa Japonica Group] Length = 690 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 +++D G GG + F +VIA+D DP + C Q Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQ 550 >gi|45656700|ref|YP_000786.1| zinc binding dehydrogenase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599936|gb|AAS69423.1| zinc binding dehydrogenase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 348 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%) Query: 45 FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQE 76 FG GG ++ + + VIALD D A+ + Sbjct: 176 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATK 212 >gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ZM4] gi|241761717|ref|ZP_04759804.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|62900473|sp|Q5NMX2|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374025|gb|EER63558.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 278 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 G GG +R+ K G+ V A++RD + E + +Q + ++ + Sbjct: 56 GPGGLTRALLKAGAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEHV 115 Query: 106 GVVFDLGVSSMQIDCGDR 123 +V +L + Sbjct: 116 HIVANLPYNVGTALLIRW 133 >gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator] Length = 978 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +I+DA GAGG + F + VIA+D DP + + + Y + F +L Sbjct: 813 IIIDAFCGAGGNTIQFALTCNKVIAIDIDPIKIELAKHNAKIYGVDNKIEFIVGNFLEL 871 >gi|194036729|ref|XP_001927911.1| PREDICTED: trimethylguanosine synthase [Sus scrofa] Length = 851 Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++DA G GG + F G VIA+D DP + + Y ++ Q F QL Sbjct: 691 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFIQGDFLQL 749 >gi|86141310|ref|ZP_01059856.1| hypothetical protein MED217_04812 [Leeuwenhoekiella blandensis MED217] gi|85831869|gb|EAQ50324.1| hypothetical protein MED217_04812 [Leeuwenhoekiella blandensis MED217] Length = 249 Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 12/194 (6%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ------ETMRDYK 82 I++LNP + ILD G G + + + G+ ++ +D + + E + Sbjct: 22 ISMLNPQKDERILDLGCGTGELTAAIAESGAQLVGIDASQEMIDAAKAQFKNIEFITARG 81 Query: 83 EQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 E F + + + P+ + + +L + + + R Sbjct: 82 ESFIDQERYDAIFSNATLHWILNPEAAISAMYSNLKIGGRLLLEMGGAGNIDTIIKALSR 141 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + E+ + +R T + L Sbjct: 142 VLEEKGYFKQSRTINWYFPKLGTYCYFLEKSGFQVTFAHLYERPTKLKDPETGIIDWLKM 201 Query: 197 KTVYFSKNNRIHPA 210 ++ + H A Sbjct: 202 FAKHYFTDIPEHEA 215 >gi|315441657|ref|YP_004074534.1| methylase involved in ubiquinone/menaquinone biosynthesis [Mycobacterium sp. Spyr1] gi|315265312|gb|ADU02053.1| methylase involved in ubiquinone/menaquinone biosynthesis [Mycobacterium sp. Spyr1] Length = 208 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 46 GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 G G S+ + + ALD DP + ++ + + +L + + + L Sbjct: 47 GYG--SQLVLQRFGADRIDALDLDPTMIDRARKRLAPCGNRVTLVRGSATDL 96 >gi|148826444|ref|YP_001291197.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE] gi|148716604|gb|ABQ98814.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE] Length = 254 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 24/219 (10%) Query: 22 PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I LL GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ +FSL+ +L + FD+ SS + ++ Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAELPESH------FDVITSSFAFH-------YIENF 130 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 P + +S++ + + +T GE + + + R + ++ Sbjct: 131 PALLSTIHDKLSSNGTLIFSQEHPITTCHKE-GERWEKNDKKQQVAYRLNHYREEGKRNR 189 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 + Q + + +I E Q Sbjct: 190 NWFKQPFQTYHRTTATIINNLIHAGFQIEQMEEPMLADQ 228 >gi|332969910|gb|EGK08912.1| rRNA methylase [Desmospora sp. 8437] Length = 200 Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 8/87 (9%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 PG +DAT G G + + V D A+ +E +R+ + +L + Sbjct: 19 NPGSFAVDATVGNGNDTLFLARAVGVSGLVHGFDIQQEALDRTEERLREAGLAGRVTLHR 78 Query: 90 ATFSQLQDY---VPDKGVDGVVFDLGV 113 A Q+ + V V+F+LG Sbjct: 79 AGHEQMAETLPPDWRGKVRAVMFNLGY 105 >gi|195110597|ref|XP_001999866.1| GI24763 [Drosophila mojavensis] gi|193916460|gb|EDW15327.1| GI24763 [Drosophila mojavensis] Length = 453 Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 VI+DA G GG + F VIA+D D ++ ++ Y + A F Q Sbjct: 287 VIVDAFCGCGGNAIQFANTCGRVIAIDIDLKKLAMAKQNASIYGVAHKIDFVHADFLQF 345 >gi|213612333|ref|ZP_03370159.1| hypothetical protein SentesTyp_07409 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 24 Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 10/22 (45%) Query: 16 TIGDHVPVLLEKVIALLNPAPG 37 H VLL++ + LN P Sbjct: 3 ENFKHTTVLLDEAVNGLNIRPD 24 >gi|256810827|ref|YP_003128196.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus fervens AG86] gi|256794027|gb|ACV24696.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus fervens AG86] Length = 180 Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 +P+ E++ I LN V++D G+GG + + V A+D + A++ ++ Sbjct: 13 IPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIARRCKFVYAIDYEEEAINLTKQ 72 Query: 77 TMRDYK 82 + + Sbjct: 73 NLAKFN 78 >gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 449 Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQF-S 86 +L+P PG ++D GG ++ ++ N + A D D + Q +R + Sbjct: 252 ILDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRRTGVRIAK 311 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +++ + + + +K D V+ D SS + ++ Sbjct: 312 IYREDSRKAPEILGEKIADRVLLDAPCSSDGTIMKNPDLRWR 353 >gi|77919975|ref|YP_357790.1| rRNA methylase domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77546058|gb|ABA89620.1| rRNA methylase domain protein [Pelobacter carbinolicus DSM 2380] Length = 232 Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR 79 LLE V+ PG + +D T G G+ F V+A D A+ + Sbjct: 42 LLEPVL-----IPGGLAVDLTAGN-GHDTLFLWSRVGAEGQVLAFDVQSQALLNTSRRLS 95 Query: 80 DYKEQFS 86 + Sbjct: 96 EAGATVQ 102 >gi|304404973|ref|ZP_07386633.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9] gi|304345852|gb|EFM11686.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9] Length = 196 Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%) Query: 36 PGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAVSCGQETMRDYKEQ-------- 84 PG ++DAT G G +R ++ G V A D A+ +E + +++ Sbjct: 20 PGDAVIDATAGNGVDTRFLAELVGPRGAVYAFDIQEAALLATRERLAPLEDEGRLPALQL 79 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + V+F+LG Sbjct: 80 VLDSHERMAAHVQPKHAGAIAAVMFNLGY 108 >gi|169836849|ref|ZP_02870037.1| hypothetical protein cdivTM_07039 [candidate division TM7 single-cell isolate TM7a] Length = 249 Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 +++I LNP + ILD G G ++ K V+ LD Sbjct: 24 KELIEWLNPKKDEYILDLGCGDGVLTKEISKYRCKVLGLD 63 >gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3] gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3] Length = 426 Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 SVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +++ D ++ D S+ + + Sbjct: 295 DVICGDARYPEEWWMGDKFDRILLDAPCSATGVIRRHPDIKW 336 >gi|312134220|ref|YP_004001558.1| short-chain dehydrogenase/reductase sdr [Caldicellulosiruptor owensensis OL] gi|311774271|gb|ADQ03758.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor owensensis OL] Length = 264 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 + SF + G+ V A+D+D A+ + D+ ++F F Sbjct: 31 ALSFLENGARVFAIDKDREAIEDASQ---DFFDKFKDRITFFE 70 >gi|225859667|ref|YP_002741177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] gi|225721520|gb|ACO17374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] Length = 451 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 12/93 (12%) Query: 23 VLLEKVIALLNPAPGKVILDA-----TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL +V+ L+ + ++DA T G +F K + +D P A+ + Sbjct: 291 VLYSEVVKALDVSKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 345 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + F ++ +P +G D Sbjct: 346 AKRMG--FDNTHYEAGTAEEIIPRWYKEGYRAD 376 >gi|331235580|ref|XP_003330450.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309440|gb|EFP86031.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 340 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 ++D GAGG S F VIA+D+DP + + + Y Sbjct: 134 VVDGFCGAGGNSIQFAMTCDKVIAIDKDPNKIKLARSNAKIYG 176 >gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK] gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK] Length = 431 Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P ++ILD GG + + V+A+D D ++ E + K Sbjct: 235 AVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLARLKLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 ++ A D+ + D ++ D S+ + + Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKW 336 >gi|88812777|ref|ZP_01128023.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231] gi|88790015|gb|EAR21136.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231] Length = 235 Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +I+D G G ++ + G V+ +D P + + + + E+F F Sbjct: 69 DDSLIVDVPCGTGRHAEVLLEQGHRVVGVDVSPAMLEVARRKLSRFGERFRTF 121 >gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202] gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202] gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda FL6-60] Length = 430 Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 9/118 (7%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 + H + LL+P G+ ILD GG + + +V+A+D D Sbjct: 230 TVQDASAQH-------SVDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDES 282 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +E ++ ++ + ++ + D ++ D S+ + + Sbjct: 283 RLKRVRENLQRLQQHAEIRCGDGRTPDEWARGRQFDRILLDAPCSATGVIRRHPDIKW 340 >gi|254463953|ref|ZP_05077364.1| UbiE/COQ5 methyltransferase familiy protein [Rhodobacterales bacterium Y4I] gi|206684861|gb|EDZ45343.1| UbiE/COQ5 methyltransferase familiy protein [Rhodobacterales bacterium Y4I] Length = 258 Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE 83 L P PG ILD G G + + +V LD P ++ ++ ++ Sbjct: 30 DALAPQPGDRILDLGCGNGLLTEELARATGPAGHVTGLDASPDMLAAARQRLQGRSN 86 >gi|30017517|gb|AAP12939.1| putative PRIP-interacting protein, 5'-partial [Oryza sativa Japonica Group] Length = 282 Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 +++D G GG + F +VIA+D DP + C Q Sbjct: 105 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQ 142 >gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555] gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016] gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555] gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 281 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 25/218 (11%) Query: 25 LEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 L+ ++ + +++ T ++ K V A++ D ++ +E ++ Sbjct: 32 LQDILEGTDINKNDFVIEIGPGVGTL-----TKELLKRAKKVCAIELDSDLIAILKEELK 86 Query: 80 DYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y F L + + + D+ +V +L K + + Sbjct: 87 HYPN-FELIHKDVLKTNFNEIIKDESSIKIVANLPY--YITTPIISKILNNKYNFKTLTI 143 Query: 138 SCSGISASDVV---NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 ++ N L+ ++ + + +++ + + S + Sbjct: 144 MIQKEVGERMISEPNCKRYGALSLLVQYYCDVEVLRKVSPYAF-------IPSPKVESIV 196 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 I+ T + +I F+ +R N + L L Sbjct: 197 IKLTKLNNPRVKIKSEDLFFRIIRCSFNMRRKTLWNAL 234 >gi|48477962|ref|YP_023668.1| methyltransferase [Picrophilus torridus DSM 9790] gi|48430610|gb|AAT43475.1| methyltransferase [Picrophilus torridus DSM 9790] Length = 173 Score = 36.2 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 8/101 (7%) Query: 28 VIALLNPAPGKVILDATFGAG-GY-SRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKE 83 V+ ++N P I+D FGAG GY S F V A++ D A+S E + D K Sbjct: 21 VLEVMNIQPDDRIID--FGAGDGYYSILFSNFLRCGYVYAIENDDEAISMINERINDNK- 77 Query: 84 QFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + + ++ V D+ ++ Sbjct: 78 KVQVINGDLCDMELPEHNKAFFSNVFHDIECRDKLMEKIVN 118 >gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3] gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3] Length = 450 Score = 36.2 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 4/101 (3%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L+P PG+ ++D GG + K + A D D + ++ ++ + Sbjct: 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKP 314 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + ++ D V+ D +S + ++ Sbjct: 315 LVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWR 355 >gi|325958455|ref|YP_004289921.1| type 11 methyltransferase [Methanobacterium sp. AL-21] gi|325329887|gb|ADZ08949.1| Methyltransferase type 11 [Methanobacterium sp. AL-21] Length = 191 Score = 36.2 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAG-GY----SRSFCKMGSNVIALDRDPFAVS-CGQETMR 79 E+++ ++N G LDA G G GY + + ALD P ++ +E Sbjct: 21 EEILDVINLKSGDKFLDA--GCGDGYVSIEASKLVGSNGKIFALDVYPESIEGVAKEVKE 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 E A + D ++ ++ Sbjct: 79 KGIENLEPILADVTDSIPLDDDSVDAVLMSNV 110 >gi|271969629|ref|YP_003343825.1| SAM-dependent methyltransferase [Streptosporangium roseum DSM 43021] gi|270512804|gb|ACZ91082.1| SAM-dependent methyltransferase, putative [Streptosporangium roseum DSM 43021] Length = 258 Score = 36.2 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 + LL+P PG+ I+D G G + G+ V+ +D Sbjct: 31 VELLDPQPGERIVDLGCGTGVLTAEITSRGARVLGID 67 >gi|150401405|ref|YP_001325171.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus aeolicus Nankai-3] gi|150014108|gb|ABR56559.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus aeolicus Nankai-3] Length = 187 Score = 36.2 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I L P V++D G+GG + K V A+D A++ ++ Sbjct: 20 VPITKEEIRAVSIGKLQLKPNDVVVDIGCGSGGMTVEIAKRCKFVYAIDGSDNAINTTKK 79 Query: 77 TMRDYK 82 + + Sbjct: 80 NLERFN 85 >gi|326789507|ref|YP_004307328.1| methyltransferase type 11 [Clostridium lentocellum DSM 5427] gi|326540271|gb|ADZ82130.1| Methyltransferase type 11 [Clostridium lentocellum DSM 5427] Length = 282 Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 24 LLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 ++EK IA +N A G +LD G G Y+ C+ G +V +D +++ + + Sbjct: 55 MIEKTIAFINKRIAKGSTVLDLGCGPGLYTERLCESGHSVTGIDFSENSINYARGSAERK 114 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + F ++ + ++G S Sbjct: 115 GLEIDYVCKNFFDMEYDGCYDVAMQIYGEIGTFS 148 >gi|217967500|ref|YP_002353006.1| methyltransferase type 11 [Dictyoglomus turgidum DSM 6724] gi|217336599|gb|ACK42392.1| Methyltransferase type 11 [Dictyoglomus turgidum DSM 6724] Length = 252 Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 L G +ILD G G ++ K G I +DR + +E + K + Sbjct: 40 LAIKRGYLILDLGCGFGRHTLELGKRGYRAIGIDRSEDLIEIAKEEAKKEKVFNVEFYIM 99 Query: 91 TFSQLQDYVPDKGVDGVVF 109 + ++ V ++ Sbjct: 100 EYKDIEKLGYKFDVVFSLY 118 >gi|149279337|ref|ZP_01885468.1| methyltransferase [Pedobacter sp. BAL39] gi|149229863|gb|EDM35251.1| methyltransferase [Pedobacter sp. BAL39] Length = 243 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L++ + A L PA ILD G G +S K G +V +D + Q+ + Sbjct: 30 LIDNLSAYLKPAADARILDIACGRGRHSIYLNKKGYDVTGIDLSEQNIKYAQQFEKKNLH 89 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 F S + + + ++ Sbjct: 90 FFVHDMRKLSFINYFDFAMNLFTSFGYFDTEKEHVN 125 >gi|224136780|ref|XP_002326943.1| predicted protein [Populus trichocarpa] gi|222835258|gb|EEE73693.1| predicted protein [Populus trichocarpa] Length = 215 Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 G I+D G GG + F + +VIA+D DP + Sbjct: 52 GDTIIDCFTGVGGNAIQFAQRYKHVIAIDIDPKKIDYA 89 >gi|158313747|ref|YP_001506255.1| methyltransferase type 11 [Frankia sp. EAN1pec] gi|158109152|gb|ABW11349.1| Methyltransferase type 11 [Frankia sp. EAN1pec] Length = 304 Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 25/82 (30%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 L APG I+D G+G +S + + G V +D A+ + Sbjct: 74 LGLAPGSRIIDVPCGSGRHSLALAERGHRVTGVDLSAEAIEHARRAAAATGTAVEFVLGD 133 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 ++ + G Sbjct: 134 MREIAPSGSFDAAVCLGNSFGY 155 >gi|306820623|ref|ZP_07454252.1| SAM-dependent methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551354|gb|EFM39316.1| SAM-dependent methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 186 Score = 36.2 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 7/92 (7%) Query: 29 IALLNPAPG----KVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDY 81 I L K+ +DAT G G + + + + A D A+ + + Sbjct: 9 IQKLIIKSNLEDVKIAIDATLGNGKDTITIRETFGKKVKIYAFDIQRDAIERSKRNIPVE 68 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F + D ++ V V+F+LG Sbjct: 69 YHDNIEFIQDSHEFIDKYVEEKVQLVMFNLGY 100 >gi|297852270|ref|XP_002894016.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339858|gb|EFH70275.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 550 Score = 36.2 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F VIA+D DP + Q Y ++ + F L Sbjct: 389 GIVIDCFTGVGGNAIQFASRRHYVIAIDLDPKKIDLAQHNAAIYGVADKIDFVKGDFFDL 448 >gi|329725493|gb|EGG61973.1| putative rRNA methylase [Staphylococcus epidermidis VCU144] Length = 187 Score = 36.2 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 +++DAT G G + F + N V D A+ + +DY Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDYSNVKLIQSGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 +D +F+LG Sbjct: 78 ENAKLHIPAQHHGCIDAAIFNLGY 101 >gi|27468352|ref|NP_764989.1| hypothetical protein SE1434 [Staphylococcus epidermidis ATCC 12228] gi|251811142|ref|ZP_04825615.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875819|ref|ZP_06284686.1| rRNA methylase family protein [Staphylococcus epidermidis SK135] gi|27315898|gb|AAO05033.1|AE016748_267 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805362|gb|EES58019.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281294844|gb|EFA87371.1| rRNA methylase family protein [Staphylococcus epidermidis SK135] gi|329737178|gb|EGG73432.1| putative rRNA methylase [Staphylococcus epidermidis VCU028] Length = 187 Score = 36.2 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ--FSLFQ 89 +++DAT G G + F + N V D A+ + +DY Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDYSNVKLIQSGH 77 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 +D +F+LG Sbjct: 78 ENAKLHIPAQHHGCIDAAIFNLGY 101 >gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] Length = 426 Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 AIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +++ + D ++ D S+ + + Sbjct: 295 DVICGDARYPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKW 336 >gi|332193981|gb|AEE32102.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 538 Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F VIA+D DP + + Y ++ + F L Sbjct: 370 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 429 >gi|163787432|ref|ZP_02181879.1| Cyclopropane-fatty-acyl-phospholipid synthase [Flavobacteriales bacterium ALC-1] gi|159877320|gb|EDP71377.1| Cyclopropane-fatty-acyl-phospholipid synthase [Flavobacteriales bacterium ALC-1] Length = 254 Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL- 87 + +L+P P + ILD G G + S K N+I +D P ++ + + + Sbjct: 23 VDVLDPKPEETILDLGCGTGELTYSISKKTLNIIGMDYSPEMIASAKVNFPEIQFFVKDA 82 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 F D + + D + Sbjct: 83 ANFNFDIQFDSIFSNATLHWILDYKSCVKSMYHN 116 >gi|42571775|ref|NP_973978.1| WW domain-containing protein [Arabidopsis thaliana] Length = 538 Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F VIA+D DP + + Y ++ + F L Sbjct: 368 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 427 >gi|77920262|ref|YP_358077.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77546345|gb|ABA89907.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 193 Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 +H+ V EK+IA L+ PG+ +LDA G G ++ F + V AL DP A Sbjct: 16 SSEHL-VEKEKIIANLSIQPGQKVLDAGCGNGYMAKEFARQVGSSGRVYAL--DPDA 69 >gi|296270988|ref|YP_003653620.1| type 12 methyltransferase [Thermobispora bispora DSM 43833] gi|296093775|gb|ADG89727.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833] Length = 258 Score = 35.8 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 3/124 (2%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 + LL+P PG+ +LD G G + G++V+ +D + + + M Y Sbjct: 31 LDLLDPKPGERVLDLGCGTGVLTAEIAARGAHVLGID---ASRAMIEAAMAKYPGLEFTV 87 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 + D + + G M +G AS + Sbjct: 88 GDAHDFTVAHPYDAVFSNAALHWMSRDPDAVISCVRMALRPGGRFIAEMGGAGNCASLIS 147 Query: 149 NQAN 152 Sbjct: 148 AMKT 151 >gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 221 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQETMRDYKEQFSLFQATFSQ 94 GKV++D G GG + F K+ S+VIA+D DP A++ + + F Q Sbjct: 62 GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 121 Query: 95 L 95 L Sbjct: 122 L 122 >gi|297157316|gb|ADI07028.1| hypothetical protein SBI_03907 [Streptomyces bingchenggensis BCW-1] Length = 353 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 3/58 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 V+ L+ PG LD G G + + VI +D DP V + D Sbjct: 118 VLDELDIRPGHTALDMGCGPGTDLAALAEAVTPSGTVIGIDADPEMVDRARGRTADLP 175 >gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana] Length = 239 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQETMRDYKEQFSLFQATFSQ 94 GKV++D G GG + F K+ S+VIA+D DP A++ + + F Q Sbjct: 80 GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 139 Query: 95 L 95 L Sbjct: 140 L 140 >gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 513 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VL + + LNP ++DA G G G++ + K +V +D P ++ +E + Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374 Query: 81 YKEQFSLFQATFSQLQDYVPDKG 103 + + +P+ Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395 >gi|260581738|ref|ZP_05849535.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127] gi|260095331|gb|EEW79222.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127] Length = 254 Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 22/164 (13%) Query: 22 PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I LL GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ +FSL+ +L + + I+ S Sbjct: 84 EKDLQKCGQFSGRFSLYHLPMEKLAELPESHFDVITS---SFAFHYIENFPTLLSTIHDK 140 Query: 132 PLDMR---------MSCSGISASDVVNQANVKDLTRILGILGEE 166 ++ + + L EE Sbjct: 141 LSSNGTLIFSQEHPITTCHKEGERWEKNDKKQQVAYRLNHYREE 184 >gi|170746537|ref|YP_001752797.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653059|gb|ACB22114.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831] Length = 370 Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK 82 P G+ I+D G GG + + G+ +IA D DP ++ E +R Sbjct: 165 PRAGETIVDLCAGGGGKTLALAAETGNGARLIATDGDPRRLAPIHERLRRSG 216 >gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] Length = 513 Score = 35.8 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VL + + LNP ++DA G G G++ + K +V +D P ++ +E + Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374 Query: 81 YKEQFSLFQATFSQLQDYVPDKG 103 + + +P+ Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395 >gi|148550480|ref|YP_001270582.1| type 12 methyltransferase [Pseudomonas putida F1] gi|148514538|gb|ABQ81398.1| Methyltransferase type 12 [Pseudomonas putida F1] Length = 207 Score = 35.8 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Query: 41 LDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYKEQFSLFQATFSQLQDYV 99 +D G+G +R+ + G +V+A+DR+P A+ + + F ++ Sbjct: 45 VDLGCGSGNETRALLQAGWDVLAIDREPAAIEMVHAIGLDHPAAKLETATQWFESIEALP 104 Query: 100 PDKGVDGVVFDLGVSSMQIDCG 121 P + + + Sbjct: 105 PSSLIHAGMALPFCHPDHFEKF 126 >gi|153003173|ref|YP_001377498.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026746|gb|ABS24514.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5] Length = 437 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 35 APGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYK 82 PGK ++DA GAGG S + + ++ ALD D + ++ R Sbjct: 237 RPGKTVVDACAGAGGKSLALAMEMRNKGSLHALDTDEGRLDDAKKRARRAG 287 >gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] Length = 513 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VL + + LNP ++DA G G G++ + K +V +D P ++ +E + Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374 Query: 81 YKEQFSLFQATFSQLQDYVPDKG 103 + + +P+ Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395 >gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 513 Score = 35.8 bits (81), Expect = 9.4, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VL + + LNP ++DA G G G++ + K +V +D P ++ +E + Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374 Query: 81 YKEQFSLFQATFSQLQDYVPDKG 103 + + +P+ Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395 >gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] Length = 430 Score = 35.8 bits (81), Expect = 9.4, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSLFQ 89 +P PG+ +LDA GG + + + +A+D D + QE + + Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGLTAKVIH 299 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + P+ D ++ D S+ + + Sbjct: 300 GDAAAPEQWWPEGQFDRILLDAPCSATGVIRRHPDIKW 337 >gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp. lactis CV56] Length = 513 Score = 35.8 bits (81), Expect = 9.4, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VL + + LNP ++DA G G G++ + K +V +D P ++ +E + Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVA--KKVKSVHGMDITPESIFDARENAKR 374 Query: 81 YKEQFSLFQATFSQLQDYVPDKG 103 + + +P+ Sbjct: 375 LG--LKNCHYEIGKAERIIPNWN 395 >gi|218887204|ref|YP_002436525.1| rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758158|gb|ACL09057.1| putative rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 243 Score = 35.8 bits (81), Expect = 9.4, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 10/128 (7%) Query: 41 LDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +D T G G+ F V A D P A++ E + A + Sbjct: 72 VDGTAGN-GHDTLFLARLVGARGLVHAFDVQPRALARTAERLASEG--LEERVALHGRGH 128 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDL 156 + + V+ +S+ + GF + R + + ++ L Sbjct: 129 EELAAALASHGVWPPRISAAMFNL---GFLPGSDRSVTTRPETTLTALEALLPMMAPGGL 185 Query: 157 TRILGILG 164 + G Sbjct: 186 ISLHVYAG 193 >gi|332717012|ref|YP_004444478.1| 3-oxoacyl-acyl-carrier-protein reductase [Agrobacterium sp. H13-3] gi|325063697|gb|ADY67387.1| 3-oxoacyl-acyl-carrier-protein reductase [Agrobacterium sp. H13-3] Length = 246 Score = 35.8 bits (81), Expect = 9.5, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 31/84 (36%) Query: 53 SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 + G+ VIA DRD AV+ E + ++ + LQ + D V D+ Sbjct: 24 ALVAQGARVIAFDRDIEAVAALAEGFGGACDPVAVDLGDATALQAVMKDVANRFEVIDIL 83 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMR 136 V++ + + + + Sbjct: 84 VNNAGVLSPHKLGATTLDDWHRLM 107 >gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] Length = 284 Score = 35.8 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 G GG +R+ G+ +VIA++RD A+ +E Y ++ ++ + Sbjct: 57 GPGGLTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFD 108 >gi|332522818|ref|ZP_08399070.1| ribosomal RNA large subunit methyltransferase A family protein [Streptococcus porcinus str. Jelinkova 176] gi|332314082|gb|EGJ27067.1| ribosomal RNA large subunit methyltransferase A family protein [Streptococcus porcinus str. Jelinkova 176] Length = 273 Score = 35.8 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 14/204 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+ LE + + L P ILD G G YSR+ + ++A D ++ + Sbjct: 74 HI---LEAISSYLQPDKNTTILDVACGEGYYSRALAQTPNHQILAFDLSKESILLAAK-- 128 Query: 79 RDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +D + + F ++L D + D + + + Sbjct: 129 KDLLNRVTWFVGDLAKLPLADQSVDIILDVFSPAHYQEFQRVLKPTGKIIKVVTASDHLK 188 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 +++ S IS+ D NQ+ + + + I ++ S Q T Sbjct: 189 ELRQVAASQISSKDYSNQSVITHFAQAFPDYA--ISHHSHTYPINQKDLSDFTQMTPLFF 246 Query: 193 SLIQKTVYFSKNNRIHPATRSFQA 216 ++ K + I A A Sbjct: 247 NVDTKQIEMESIREITIAADILIA 270 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.133 0.413 Lambda K H 0.267 0.0409 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,755,626,520 Number of Sequences: 14124377 Number of extensions: 159645143 Number of successful extensions: 369659 Number of sequences better than 10.0: 3330 Number of HSP's better than 10.0 without gapping: 2667 Number of HSP's successfully gapped in prelim test: 663 Number of HSP's that attempted gapping in prelim test: 358396 Number of HSP's gapped (non-prelim): 3430 length of query: 341 length of database: 4,842,793,630 effective HSP length: 139 effective length of query: 202 effective length of database: 2,879,505,227 effective search space: 581660055854 effective search space used: 581660055854 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 81 (35.8 bits)