RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase
MraW [Candidatus Liberibacter asiaticus str. psy62]
(341 letters)
>gnl|CDD|30623 COG0275, COG0275, Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane].
Length = 314
Score = 349 bits (896), Expect = 9e-97
Identities = 134/306 (43%), Positives = 198/306 (64%), Gaps = 8/306 (2%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
H+PVLL +V+ LL P P + +D T GAGG+SR+ + +I +DRDP A++ +E
Sbjct: 7 HIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66
Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
++++ + +L F+ L + + + G VDG++ DLGVSS Q+D +RGFSF+K GPL
Sbjct: 67 RLKEFDGRVTLVHGNFANLAEALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPL 126
Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
DMRM G+SA++VVN + +DL RI GEE+ A RIA AIV+RR+ P +TT++L+
Sbjct: 127 DMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRIARAIVERRKKKPIETTKELA 186
Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
+I+ + K +IHPATR+FQA+RI+VN+E+EEL + L +A LK GG L V+SFH
Sbjct: 187 EIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAALDLLKPGGRLAVISFH 246
Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
SLEDR+VK FF S + + F+ ITKK ++P++E++ N R+RSAKL
Sbjct: 247 SLEDRIVKNFFKELSKPGVPKGLPVTEEGPALKFKLITKKPIMPSEEEIEANPRARSAKL 306
Query: 312 RAGMRT 317
R +
Sbjct: 307 RVAEKI 312
>gnl|CDD|110769 pfam01795, Methyltransf_5, MraW methylase family. Members of this
family are probably SAM dependent methyltransferases
based on Escherichia coli mraW. This family appears to
be related to pfam01596.
Length = 310
Score = 310 bits (795), Expect = 5e-85
Identities = 133/303 (43%), Positives = 201/303 (66%), Gaps = 11/303 (3%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
H+ VLL++V+ LLN P + +D T G GG+S + ++ +I +DRDP A++ +E
Sbjct: 4 HISVLLQEVVELLNIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKE 63
Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
++ +K + +L + F+ L Y+ + G VDG++FDLGVSS Q+D +RGFSF+ PL
Sbjct: 64 RLKPFKGRVTLIHSNFANLFAYLKELGVGKVDGILFDLGVSSPQLDGAERGFSFKHDAPL 123
Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
DMRM +G++A++V+N + +DL RI GEE+ + RIA AIV+RR+ P +TT++L+
Sbjct: 124 DMRMDQSAGLTAAEVLNTYSEEDLARIFKKYGEERFSKRIARAIVERRKKKPIETTKELA 183
Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
+I+K V +K +IHPATR+FQA+RI+VN+E+E L + L A L GG L V+SFH
Sbjct: 184 EIIKKAVPAKAKRKKIHPATRTFQAIRIYVNDELESLKEALEQAPDLLAPGGRLSVISFH 243
Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
SLEDR+VK FF S+ +V A +I P + + ITKK ++P++E++ N RSRSA
Sbjct: 244 SLEDRIVKNFFREYSKGCQVPAGLPVILEGLEP-LLKIITKKPILPSEEEIEENPRSRSA 302
Query: 310 KLR 312
KLR
Sbjct: 303 KLR 305
>gnl|CDD|37993 KOG2782, KOG2782, KOG2782, Putative SAM dependent
methyltransferases [General function prediction only].
Length = 303
Score = 185 bits (470), Expect = 2e-47
Identities = 103/266 (38%), Positives = 145/266 (54%), Gaps = 16/266 (6%)
Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
+ HVPV+L++V+ +L+P G+ +D TFGAGG++ S + S ALDRDP
Sbjct: 18 ADGDEVPSSHVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDP 77
Query: 69 FAVSCGQE--------TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
A T++ FS ++ + + D GVDG++ DLG SSMQ+D
Sbjct: 78 VARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG--LLDVGVDGILMDLGCSSMQVDN 135
Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
+RGFS + GPLDMRM + + A D+VN +L R+L GEE + + IVK
Sbjct: 136 PERGFSVLQDGPLDMRMDGGASLGAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKA 195
Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
R + +T +L LI+ T S+ R I AT+ FQ LRI VNNE++ L L +
Sbjct: 196 RLNGGLHSTGELVDLIRGTSPASRGGRQGWIKTATKVFQGLRIAVNNELKTLQNSLYLSF 255
Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFF 262
L GG L V+SFHSLEDR+VK+ F
Sbjct: 256 DVLAPGGRLAVISFHSLEDRVVKRTF 281
>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 38.4 bits (89), Expect = 0.003
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-- 79
L E + L A G+ +LD G G + K V ++ P AV QE
Sbjct: 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAAN 338
Query: 80 -DYKEQF---SLFQATFSQLQDYVPDKGVDGVVFD 110
+F + T + + Y PD VV D
Sbjct: 339 GIDNVEFIAGDAEEFTPAWWEGYKPDV----VVVD 369
>gnl|CDD|37941 KOG2730, KOG2730, KOG2730, Methylase [General function prediction
only].
Length = 263
Score = 37.3 bits (86), Expect = 0.006
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
+ +V+A +N +VI+DA G GG + F G VIA+D DP ++C + Y
Sbjct: 85 IANRVVACMNA---EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVY 139
>gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 33.3 bits (76), Expect = 0.097
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
MS +H +I+LL PG +LD G G + K V+ LD
Sbjct: 31 MSFGLHRLWRR-------ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDI 83
Query: 67 DPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112
+ +E ++ + L PD D V G
Sbjct: 84 SESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDNSFDAVTISFG 128
>gnl|CDD|32409 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
4-benzoquinol methylase [Coenzyme metabolism].
Length = 243
Score = 31.8 bits (72), Expect = 0.25
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
H I + +V L PG +LD G G S ++G++V +D
Sbjct: 38 HKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGID 88
>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 30.2 bits (68), Expect = 0.79
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
++ L P PG + D G G + + G + VIA++RD A+
Sbjct: 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL 71
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model..
Length = 461
Score = 30.2 bits (69), Expect = 0.84
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 17 IGDHVPVLLEKV-IALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIAL--DRDPF 69
D++ L V + + A KV++D +GAG GY + G +V + +RDP
Sbjct: 153 KPDYLEALRSLVDLEAIREAGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAERDPL 210
>gnl|CDD|32588 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
P ++ +++ LL PG +L+ G+G + ++ V++++R
Sbjct: 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE 104
>gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 258
Score = 29.6 bits (67), Expect = 1.4
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
++ +++ N +L+ G G + K V+A++ DP
Sbjct: 16 KKVINRIVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDP 62
>gnl|CDD|30380 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
+++K++ N +PG +L+ G G + + + V A++ D +E
Sbjct: 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA 73
Query: 80 DYK 82
Y
Sbjct: 74 PYD 76
>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related
proteins. Cinnamyl alcohol dehydrogenases (CAD),
members of the medium chain dehydrogenase/reductase
family, reduce cinnamaldehydes to cinnamyl alcohols in
the last step of monolignal metabolism in plant cells
walls. CAD binds 2 zinc ions and is NADPH- dependent.
CAD family members are also found in non-plant species,
e.g. in yeast where they have an aldehyde reductase
activity. The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes, or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 330
Score = 28.4 bits (64), Expect = 2.7
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 26/87 (29%)
Query: 33 NPAPGKVILDATFGAGG-------YSRSFCKMGSNVIALDRDP----FAVSCGQETMRDY 81
P PG+ + A G GG Y+R MG +A+ R P A G +
Sbjct: 159 GPRPGERV--AVLGIGGLGHLAVQYAR---AMGFETVAITRSPDKRELARKLGAD----- 208
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVV 108
+ ++L + G D ++
Sbjct: 209 -----EVVDSGAELDEQAAAGGADVIL 230
>gnl|CDD|31243 COG1041, COG1041, Predicted DNA modification methylase [DNA
replication, recombination, and repair].
Length = 347
Score = 28.4 bits (63), Expect = 2.9
Identities = 19/80 (23%), Positives = 28/80 (35%)
Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
L G+++LD G GG MG+ VI D D V + + Y +
Sbjct: 192 LARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251
Query: 91 TFSQLQDYVPDKGVDGVVFD 110
+ D VD + D
Sbjct: 252 VLDATNLPLRDNSVDAIATD 271
>gnl|CDD|30493 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 28.1 bits (62), Expect = 3.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN----VIALDRDP 68
+L+P PG+ +LD GG + ++ N V+A+D P
Sbjct: 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP 192
>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like
proteins, child 2. 2-enoyl thioester reductase (ETR)
like proteins. ETR catalyzes the NADPH-dependent
conversion of trans-2-enoyl acyl carrier
protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty
acid synthesis. 2-enoyl thioester reductase activity
has been linked in Candida tropicalis as essential in
maintaining mitiochondrial respiratory function. This
ETR family is a part of the medium chain
dehydrogenase/reductase family, but lack the zinc
coordination sites characteristic of the 2-enoyl
thioester reductase (ETR) like proteins. ETR catalyzes
the NADPH-dependent dependent conversion of
trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA)
to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl
thioester reductase activity has been linked in Candida
tropicalis as essential in maintaining mitiochondrial
respiratory function. This ETR family is a part of the
medium chain dehydrogenase/reductase family, but lack
the zinc coordination sites characteristic of the
alcohol dehydrogenases in this family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is
comprised of 2 structurally similar halves, each of
which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a
catalytic zinc at the active site, and a structural
zinc in a lobe of the catalytic domain. NAD(H) binding
occurs in the cleft between the catalytic and
coenzyme-binding domains, at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. Candida tropicalis
enoyl thioester reductase (Etr1p) catalyzes the
NADPH-dependent reduction of trans-2-enoyl thioesters
in mitochondrial fatty acid synthesis. Etr1p forms
homodimers, with each subunit containing a
nucleotide-binding Rossmann fold domain and a catalytic
domain.
Length = 324
Score = 28.1 bits (63), Expect = 3.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVIL 41
M +A+H GD VL + P G+V++
Sbjct: 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLV 33
>gnl|CDD|35481 KOG0260, KOG0260, KOG0260, RNA polymerase II, large subunit
[Transcription].
Length = 1605
Score = 27.6 bits (61), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
D+ +++R+ L+ G + VER + D V R P+L +
Sbjct: 406 DLRYHKRAGDIHLQPGYK-VERHLMDGDVVLFNRQPSLHK 444
>gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 27.2 bits (60), Expect = 6.8
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 36 PGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ-ATFS 93
GK +LD G+G + + K+G V+ +D DP AV +E L
Sbjct: 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-------EAARENARLNGVELLV 214
Query: 94 QLQDYVPDKGVDGVVFDLGVS 114
Q + ++ + + FD+ V+
Sbjct: 215 QAKGFLLLEVPENGPFDVIVA 235
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 27.1 bits (61), Expect = 7.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 218 RIFVNNEIEELA-QGLRSAEKALKAGGLLI--VVSFHSLEDRL 257
R + +E L G SAE+AL+AG L+ + LE RL
Sbjct: 180 RGLSPDALEALIDLGGDSAEEALEAG--LVDGLAYRDELEARL 220
>gnl|CDD|147132 pfam04821, TIMELESS, Timeless protein. The timeless gene in
Drosophila melanogaster and its homologues in a number
of other insects and mammals (including human) are
involved in circadian rhythm control. This family
includes a related proteins from a number of fungal
species.
Length = 266
Score = 26.8 bits (60), Expect = 8.0
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 76 ETMRDYKEQFSLFQATFSQLQDY-------VPDKGVDGVVFDLGVSSMQIDCGDR 123
E + + + + +LQ+ D V V L + S+ + DR
Sbjct: 75 ELLVGKEPKTVNGRRHIPELQEALQGYKEAFLDAKVLKAVVRLLLPSLAVPWEDR 129
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 26.8 bits (60), Expect = 9.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 191 LSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQG 231
L+S I +++N N AT + ++N E E QG
Sbjct: 402 LTSYI-----YTENLNTAMRATNELEFGETYINRENFEAMQG 438
>gnl|CDD|36484 KOG1270, KOG1270, KOG1270, Methyltransferases [Coenzyme transport
and metabolism].
Length = 282
Score = 26.9 bits (59), Expect = 9.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
P G ILD G G S ++G+ V +D V E
Sbjct: 87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANE 129
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.134 0.377
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,864,870
Number of extensions: 195835
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 25
Length of query: 341
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,232,491
Effective search space: 1045425277
Effective search space used: 1045425277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)