RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase
MraW [Candidatus Liberibacter asiaticus str. psy62]
(341 letters)
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 268 bits (686), Expect = 1e-72
Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 25/307 (8%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
H+PV++ +VI L P K+ILD T G GG+SR+ + +I +D D + +E
Sbjct: 10 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69
Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
++++ ++ SLF+ ++ + + G VDG++ DLGVS+ Q+ +RGF+F++ PLD
Sbjct: 70 LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 129
Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192
MRM +A V+N+ ++L RI+ GEEK+ A RIA IV+ R
Sbjct: 130 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENRPLNTTLDLVKAV 189
Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
Y + + H AT++FQA+RI+VN E+E L + L+ AE L GG ++V+SFHS
Sbjct: 190 -REALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISFHS 248
Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
LEDR+VK+ F + + +T+K V P++E++ N R+RS +LR
Sbjct: 249 LEDRIVKETF-----------------RNSKKLRILTEKPVRPSEEEIRENPRARSGRLR 291
Query: 313 AGMRTVE 319
A R E
Sbjct: 292 AAERIEE 298
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 227 bits (580), Expect = 2e-60
Identities = 116/298 (38%), Positives = 160/298 (53%), Gaps = 20/298 (6%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ +
Sbjct: 6 HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHL 65
Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
+ + + VDG++ DLGVSS +D RGFS+QK GPLDMRM
Sbjct: 66 PGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMGL 125
Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+
Sbjct: 126 EGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAARE--KAPIETTTQLAEIVRK 183
Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
HPA ++FQALRI+VN+E+ L + L A + L GG L+V++FHSLEDR+VK
Sbjct: 184 AVGFRRAGHPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVK 243
Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
+F KV +TKK +VP++++ A N R+RSAKLRA +
Sbjct: 244 RFLRESGLKV------------------LTKKPLVPSEKEAAQNPRARSAKLRAAEKE 283
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 57.6 bits (139), Expect = 4e-09
Identities = 59/386 (15%), Positives = 102/386 (26%), Gaps = 178/386 (46%)
Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA-L---- 64
++ T V L++ L+ L T + K+ G N++ L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSE------LIRT------TLDAEKVFTQGLNILEWLENPS 223
Query: 65 ---DRD---------P---------FAVSC-------GQETMRDYKEQFSLFQAT--FSQ 94
D+D P + V+ G+ +R Y + SQ
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSY------LKGATGHSQ 275
Query: 95 LQDYVPDKGVDGVV-------------------------FDLGVSSMQI----------- 118
G+V F +GV +
Sbjct: 276 -----------GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 119 -DCGDRGFSFQKSG-PLDMRMSCSGISASDV---VNQANVKDLTRILGILGEEKQASRIA 173
D + G P M +S S ++ V VN+ N L KQ I+
Sbjct: 325 EDSLENNE-----GVPSPM-LSISNLTQEQVQDYVNKTN--------SHLPAGKQVE-IS 369
Query: 174 ------HAIVK-------------RRQSAPFQTTQDLSSLIQKTVYFSK-----NNRIHP 209
+ +V R+ AP + D Q + FS+ +NR P
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLD-----QSRIPFSERKLKFSNRFLP 422
Query: 210 ATRSF--QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
F L + + + L + A + I V + + G
Sbjct: 423 VASPFHSHLLV----PASDLINKDLVKNNVSFNAKDIQIPV-YD------------TFDG 465
Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVV 293
+ R + + + I + V
Sbjct: 466 SDL--RVL-SGSISERIVDCIIRLPV 488
Score = 38.8 bits (90), Expect = 0.002
Identities = 60/371 (16%), Positives = 101/371 (27%), Gaps = 161/371 (43%)
Query: 30 ALLNPAP-GKVILDATFGAGG------------YS--RSFCK-----MGSNVIALDRDPF 69
AL G L A FG G Y + L R
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT- 202
Query: 70 AVSCGQETMRDYKEQFSLFQATFSQ-------LQ--------DY---VPDKGVDGVVFDL 111
F+Q L+ DY +P + L
Sbjct: 203 ------LDAEKV----------FTQGLNILEWLENPSNTPDKDYLLSIP------ISCPL 240
Query: 112 -GVSSM---QIDCGDRGFSFQKSGPLDMRMSCSG-------------ISASDVVNQ--AN 152
GV + + GF+ P ++R G I+ +D +
Sbjct: 241 IGVIQLAHYVVTAKLLGFT-----PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS-SLIQKTVYFSKNNRIHPAT 211
V+ +L +G ++ P T+ L S+++ ++ +NN P+
Sbjct: 296 VRKAITVLFFIGVRCY------------EAYP-NTS--LPPSILEDSL---ENNEGVPSP 337
Query: 212 R-SFQALRI-FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
S L V + + + L + ++ + +S LV +G
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQ--------VEIS-------LV-------NG-- 373
Query: 270 MAVRHMIPSNAHPAVFQSITKKVVV--PTQEDVAFNRRSRSAKLRAGMRTV-----ERSI 322
N +VV P Q N R AK +G+ ER +
Sbjct: 374 -------AKN------------LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 323 EDDSFVH--LP 331
+ F + LP
Sbjct: 415 K---FSNRFLP 422
Score = 34.1 bits (78), Expect = 0.041
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-------RSFCKMGSNVI---ALDRDP 68
+PV E ILD FG GG S R+ G VI LD +P
Sbjct: 485 RLPVKWETTTQF----KATHILD--FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 26.4 bits (58), Expect = 8.8
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 36/124 (29%)
Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
+ R L+ G S E L L+ + + +L ++F
Sbjct: 5 STRPLT------LSHG--SLEHVL-----LVPTASFFIASQLQEQFNKI----------- 40
Query: 276 IP----SNAHPAVFQSITKKV------VVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
+P A + + V V E + + L + E +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEG 98
Query: 326 SFVH 329
+ +H
Sbjct: 99 NDIH 102
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus}
Length = 185
Score = 50.5 bits (120), Expect = 5e-07
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
L +V+ +++DAT G G + + V A D A+ + + D
Sbjct: 15 FLAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI 69
Query: 84 Q-FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
+ L L YV + +F+LG
Sbjct: 70 ENTELILDGHENLDHYVREPIRA-AIFNLGY 99
>1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein,
structural genomics, JCSG, protein structure
initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans
c-125} SCOP: c.66.1.41
Length = 260
Score = 46.9 bits (110), Expect = 6e-06
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
++S IH D L K++ + + +LD G G + +F V+A D
Sbjct: 15 VTSQIHAKGSD-----LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTE 69
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase, structural genomics; 1.90A
{Anabaena variabilis atcc 29413}
Length = 279
Score = 47.0 bits (110), Expect = 7e-06
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
V E ++ LLNP PG+ ILD G G + + G+ V+ D + ++
Sbjct: 40 SFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY 99
Query: 79 RDYKEQF 85
Sbjct: 100 PHLHFDV 106
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 43.9 bits (103), Expect = 5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
++ L P V +D G GG + V A+DR+P A+S + ++ +
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 42.1 bits (98), Expect = 2e-04
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
+ V++DA G GG + F G VIA+D DP ++ + Y +
Sbjct: 73 VSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFI 132
Query: 91 TFSQLQDYVPDKGVDGVVFD 110
D V
Sbjct: 133 C-GDFLLLASFLKADVVFLS 151
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 41.1 bits (95), Expect = 4e-04
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDR 66
T+S + H + +L PG ILD G+G ++ + G +D
Sbjct: 8 TISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDM 67
Query: 67 DPFAVSCGQETMRDY 81
+ + +
Sbjct: 68 SSLFTAQAKRRAEEL 82
>2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661}
Length = 183
Score = 40.1 bits (93), Expect = 8e-04
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 18 GDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
+ VP+ E++ I LN V++D G+GG + K V A+D A+
Sbjct: 13 REGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEV 72
Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
++ + K Q + +D + + + +I
Sbjct: 73 TKQNLA--KFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKIIE 117
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 39.3 bits (91), Expect = 0.001
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 28 VIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
V+ +P KV LD G G S +G +V + D + +++ ET S
Sbjct: 112 VVDAAKIISPCKV-LDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNIS 170
Query: 87 LFQATFSQLQDYVP-DKGVDGVVF 109
+ D V VVF
Sbjct: 171 TALYDINAANIQENYDFIVSTVVF 194
Score = 29.7 bits (66), Expect = 1.0
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLED 255
E + +++ ++ GG ++V+ S +D
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMSTDD 229
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 39.5 bits (91), Expect = 0.001
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
L +I +LD GAG + +F I +D V ++ +
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 69
Query: 85 F 85
Sbjct: 70 N 70
Score = 30.3 bits (67), Expect = 0.66
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
+ + ++ + +R + LK G ++V ++ ED ++ +F
Sbjct: 92 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFV 137
>3dmg_A Probable ribosomal RNA small subunit methyltransferase;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A*
Length = 381
Score = 39.1 bits (90), Expect = 0.001
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 23 VLLEKVIALLNP--APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
+LLE + L P G+ +LD G G + +MG+ V+ ++ D +V Q+ +
Sbjct: 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA 277
Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
+ + + D +V +
Sbjct: 278 NALKAQALH--SDVDEALTEEARFDIIVTN 305
Score = 30.3 bits (67), Expect = 0.74
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV--SFHSLEDRLVKKF 261
+ + ++ + A L+ GG+ +V F E L +KF
Sbjct: 304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKF 354
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 38.3 bits (89), Expect = 0.003
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
++++ N P IL G G + +G V A+D+ ++ ++ ++ + +
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITT 80
Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
Q+ + D V D ++ VS
Sbjct: 81 VQSNLADF-DIVADA------WEGIVSIFCH 104
Score = 30.2 bits (68), Expect = 0.64
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
IF + Q + LK GG+ I+ F
Sbjct: 101 IFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 38.0 bits (87), Expect = 0.003
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 6/83 (7%)
Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
E ++ + +L+ G G + G V ++ +E +
Sbjct: 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSIT 94
Query: 86 SLFQATFSQLQDYVPDKGVDGVV 108
+ +D +V
Sbjct: 95 ------EGDFLSFEVPTSIDTIV 111
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 37.4 bits (86), Expect = 0.004
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
E+ + + VI+D G G Y + + + + +D + A+ +E
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVI--- 63
Query: 86 SLFQATFSQLQDYVPDKGVDGVVF 109
+PD VD ++F
Sbjct: 64 ------TLSDPKEIPDNSVDFILF 81
Score = 29.7 bits (66), Expect = 1.1
Identities = 7/53 (13%), Positives = 21/53 (39%)
Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
V + + P L +++++ + ++ LK G +I++ +
Sbjct: 62 VITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR 114
>1pjz_A Thiopurine S-methyltransferase; polymorphism,
S-adenosylmethionine, drug metabolism; NMR {Pseudomonas
syringae PV} SCOP: c.66.1.36
Length = 203
Score = 36.8 bits (84), Expect = 0.007
Identities = 13/79 (16%), Positives = 21/79 (26%)
Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
V L++ + LN PG +L G G +V+ + AV
Sbjct: 5 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 64
Query: 79 RDYKEQFSLFQATFSQLQD 97
+ S
Sbjct: 65 GEQPHITSQGDFKVYAAPG 83
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural genomics, NPPSFA; HET:
SAM; 2.20A {Aquifex aeolicus VF5}
Length = 248
Score = 36.6 bits (84), Expect = 0.008
Identities = 12/91 (13%), Positives = 27/91 (29%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
P + LN K +L+ G+G ++ V + Q+ ++ +
Sbjct: 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF 136
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112
++ VP+ D+
Sbjct: 137 NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR 167
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein structure initiative; HET: MSE;
1.80A {Porphyromonas gingivalis}
Length = 410
Score = 36.5 bits (84), Expect = 0.010
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQAT 91
G ++D T G G + S I ++R+ + + + ++
Sbjct: 92 REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGD 151
Query: 92 FSQLQDYVPDKGVDGVVFD 110
F + + D + D
Sbjct: 152 FKEYLPLIKTFHPDYIYVD 170
>3ege_A Putative methyltransferase from antibiotic biosynthesis pathway;
YP_324569.1, structural genomics; 2.40A {Anabaena
variabilis atcc 29413}
Length = 261
Score = 36.4 bits (83), Expect = 0.010
Identities = 16/64 (25%), Positives = 23/64 (35%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
++ +I LLN G VI D G GGYS + G V A++ +
Sbjct: 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVE 79
Query: 82 KEQF 85
Sbjct: 80 WFTG 83
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 36.0 bits (82), Expect = 0.014
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
P+++ +I P V+L+ G G + + V+A + DP V+ + ++
Sbjct: 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT 73
Query: 82 KEQFSLFQATFSQL 95
L L
Sbjct: 74 PVASKLQVLVGDVL 87
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 1xcj_A* 1xcl_A* 1p1c_A*
1p1b_A* 1khh_A*
Length = 236
Score = 35.8 bits (81), Expect = 0.014
Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKE 83
+A + G +L+ FG + + ++ + ++
Sbjct: 49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH 108
Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
+ + + + +PD DG+++D S +
Sbjct: 109 KVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWH 145
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 35.6 bits (81), Expect = 0.017
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
+L + + L G + G + F G V+ ++ +
Sbjct: 50 EQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGI 103
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal
domain, methyltransferase, plasmid; HET: SAH; 1.20A
{Escherichia coli} PDB: 3fri_A* 3b89_A*
Length = 253
Score = 35.6 bits (81), Expect = 0.017
Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
++H + + + L + + + +LD G + + + ++V D
Sbjct: 81 SLHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLAL-YERGIASVWGCDIHQGLG 139
Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
R+ F+ + P + D +
Sbjct: 140 DVITPFAREKDWDFTFALQD---VLCAPPAEAGDLAL 173
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine
methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP:
c.66.1.31
Length = 416
Score = 35.5 bits (81), Expect = 0.018
Identities = 7/82 (8%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
G+ L+ ++I + + +D G G + +++
Sbjct: 134 EVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAK 193
Query: 73 CGQETMRDYKEQFSLFQATFSQ 94
+ R++++ + ++
Sbjct: 194 YAETMDREFRKWMKWYGKKHAE 215
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 35.0 bits (80), Expect = 0.023
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
+ ++DAT G G + +G V L+R+P + + + +
Sbjct: 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGG 141
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 35.1 bits (80), Expect = 0.024
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
L+ ++ + G+ L G G + V+ LD A++ ET +
Sbjct: 55 LIVHLVDTSSLPLGRA-LVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK 113
Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
F + + P + D ++FD
Sbjct: 114 AE-YFSFVKEDVFTWRPTELFD-LIFDYVF 141
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, midwest center for structural
genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm
1728} SCOP: c.66.1.13
Length = 275
Score = 34.6 bits (79), Expect = 0.030
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
+I PG IL+ G+G S + ++RD + + + ++
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 158
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein, transferase; HET:
TNA MTA; 1.66A {Methanothermobacterthermautotrophicus}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Length = 298
Score = 34.7 bits (79), Expect = 0.032
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 6/110 (5%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81
LL+ AL G+ + G + G V ++ +P E R
Sbjct: 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIA----ELSRKV 165
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
E + + V D V+ ++ + + +
Sbjct: 166 IEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTE 215
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 34.7 bits (79), Expect = 0.034
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 24 LLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
L + ++A L +LD G G Y+ +F + D V+ R
Sbjct: 70 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY 129
Query: 81 YKEQFSLFQATFSQLQD 97
+ F + + D
Sbjct: 130 PQVTFCVASSHRLPFSD 146
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 34.3 bits (78), Expect = 0.044
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYK 82
++ L P +LD GAG S +F + + D AV + T+
Sbjct: 189 LSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG 244
Score = 28.1 bits (62), Expect = 2.5
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV--SFHSLEDRLV 258
FS+ S + ++ +R A + L +GG L +V +F D L
Sbjct: 255 FSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLD 314
Query: 259 KKF 261
+ F
Sbjct: 315 ETF 317
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 34.2 bits (77), Expect = 0.045
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82
L V+A+L K ++D G G K + +D + ++ ++ +
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.047
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 14/39 (35%)
Query: 236 EK-ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
EK ALK L+ L K +A S +A++
Sbjct: 18 EKQALK-----------KLQASL--KLYADDSAPALAIK 43
Score = 31.9 bits (71), Expect = 0.24
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 166 EKQASRIAHAIVK--RRQSAPFQTTQDLSSL-IQKTV 199
EKQA + A +K SAP +L I+ T+
Sbjct: 18 EKQALKKLQASLKLYADDSAP--------ALAIKATM 46
Score = 31.5 bits (70), Expect = 0.27
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 210 ATRSFQA-LRIFVNNEIEELAQGLRSAEKALKA 241
A + QA L+++ ++ A L A+KA
Sbjct: 21 ALKKLQASLKLYADDS----APAL-----AIKA 44
Score = 30.4 bits (67), Expect = 0.69
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 16/40 (40%)
Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337
E A + S KL A DDS P L+
Sbjct: 18 EKQALKKLQASLKLYA----------DDS------APALA 41
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics, protein structure initiative, PSI;
HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 33.7 bits (76), Expect = 0.056
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-----VIA 63
MS I +++G ++ + G ++DAT G G + +
Sbjct: 1 MSLTIKNSLGQSH-DYIKMFVK-----EGDTVVDATCGNGNDTAFLASLVGENGRVFGFD 54
Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116
+ A + + T + ++ +L + + Y D V V+F+LG
Sbjct: 55 IQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-IDCPVKAVMFNLGYLPS 106
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin
metabolism, S-adenosyl-methionine, structural genomics;
1.80A {Geobacter metallireducens gs-15}
Length = 204
Score = 33.6 bits (76), Expect = 0.059
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 11/150 (7%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
++ L V+ D G+ S + + AL+R+P + ++ + K
Sbjct: 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNL--KKFVA 89
Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145
+ + + D VF G M + D KS ++A
Sbjct: 90 RNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE------GVIVLNAV 143
Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHA 175
+ + G + E +A
Sbjct: 144 TLDTLTKAVEFLEDHGYMVEVACV-NVAKT 172
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 33.8 bits (76), Expect = 0.062
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
EKV+ G +LD GAG Y KM V A+D V+ E +
Sbjct: 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL 85
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural genomics consortium, SGC; HET: SAM; 2.50A
{Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 33.6 bits (76), Expect = 0.070
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ 84
++++++ PG +L+A G+GG S K VI+ + ++ + +++
Sbjct: 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 156
Query: 85 FS------------LFQATFSQLQDYVPDKGVDGVVFDLG 112
+ S + + D V D+
Sbjct: 157 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 196
>3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA
methylase, ribosomal assembly, methyltransferase,
RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB:
3fyc_A*
Length = 263
Score = 33.2 bits (75), Expect = 0.079
Identities = 10/62 (16%), Positives = 18/62 (29%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
+ K + N V+L+ G G + K V ++ D + Y
Sbjct: 7 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY 66
Query: 82 KE 83
Sbjct: 67 NN 68
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 33.1 bits (75), Expect = 0.083
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 6/96 (6%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM 78
P L+ + + G +L+ G G + ++ V++++ + +
Sbjct: 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120
Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
E D + +GV
Sbjct: 121 ERLGIENVIFVCGDGYYG--VPEFSPYDVIFVTVGV 154
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 33.1 bits (75), Expect = 0.084
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81
L + + PG +L+A G G + K + + ++D P ++ +E
Sbjct: 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN 84
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDG 106
+ + D D
Sbjct: 85 GIKNV-KFLQANIFSLPFEDSSFDH 108
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 33.1 bits (74), Expect = 0.089
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
+ P G V L+ G G + F +G V AL+ ++ ++ + +
Sbjct: 72 AREFATRTGPVSGPV-LELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEA 127
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 33.3 bits (75), Expect = 0.091
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 26 EKVIALLNPA--PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
+I +LD G G + + G + +D + G+E
Sbjct: 41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDL 100
Query: 84 QFSLFQATFSQLQD 97
F + ++
Sbjct: 101 SFIKGDLSSLPFEN 114
Score = 27.5 bits (60), Expect = 4.2
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
I EE + L ++ LK+ G +
Sbjct: 123 INSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 32.9 bits (74), Expect = 0.096
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
P +L+K+I ++L+ G G + + VI +D D +S ++
Sbjct: 28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYE 87
Query: 82 KEQF 85
Sbjct: 88 GYNN 91
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 32.9 bits (74), Expect = 0.10
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86
+ +L K +LD G G + + G+ V+ +D ++ + +
Sbjct: 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYE 95
Query: 87 LFQATFSQLQDYVPD 101
++ +
Sbjct: 96 QKAIEDIAIEPDAYN 110
Score = 28.3 bits (62), Expect = 2.5
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
+ I + LK+ G I H +
Sbjct: 115 SLALHYIASFDDICKKVYINLKSSGSFIFSVEHPV 149
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27}
Length = 258
Score = 33.1 bits (75), Expect = 0.10
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM 78
P ++ LL+ APG +L+A G+GG + + V + + P ++ + +
Sbjct: 82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV 141
Query: 79 RDY 81
R +
Sbjct: 142 RAF 144
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
NP_988299.1, structural genomics, joint center for
structural genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 33.0 bits (74), Expect = 0.11
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRD 80
P++ E +I G +D G G S + K ++ ALD + + D
Sbjct: 30 PIIAENIINRFGITAGTC-IDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIAD 88
Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
+ + D D +V
Sbjct: 89 ANLNDRIQIVQGDVHNIPIEDNYADLIVS 117
Score = 27.2 bits (59), Expect = 5.4
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
+ E++A R + LK+GG + ++ L A K +
Sbjct: 116 VSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKE-LRDSISAEMIRKNPDWKEFN 174
Query: 277 PSNAHP 282
N
Sbjct: 175 RKNISQ 180
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3hca_A* 3hce_A* 2obf_A* 2onz_A* 2opb_A*
1hnn_A* 1n7i_A* 1n7j_A*
Length = 289
Score = 33.0 bits (74), Expect = 0.11
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 21 VPVLLEKVIALLNPA--PGKVILDATFGAGGYSR-SFCKMGSNVIALDRDPFAVSCGQET 77
P L + G+ ++D G Y S C ++ D
Sbjct: 54 GPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRW 113
Query: 78 MRDYKEQF 85
+++ F
Sbjct: 114 LQEEPGAF 121
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 32.8 bits (73), Expect = 0.11
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
P K+I + K+++D G G + + +I D + +
Sbjct: 20 SYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79
Query: 77 TMRDYKEQFS 86
+ +
Sbjct: 80 IKEGSPDTYK 89
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 32.7 bits (74), Expect = 0.11
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82
LE V + ++ G ++LD + G + IA + + + +
Sbjct: 6 LELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG 63
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 32.7 bits (74), Expect = 0.12
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
V PG+ +LD GG + K ++ + P E + +
Sbjct: 97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS 156
Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110
++ D +V D
Sbjct: 157 NAIVTNHAPAELVPHFSGFFDRIVVD 182
>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine
dimethyltransferase, rRNA modification, transferase,
translation; 2.10A {Escherichia coli} SCOP: c.66.1.24
Length = 252
Score = 32.4 bits (73), Expect = 0.14
Identities = 6/62 (9%), Positives = 24/62 (38%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
+++ +++ +NP G+ +++ G + + + ++ D + Q
Sbjct: 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG 66
Query: 82 KE 83
+
Sbjct: 67 PK 68
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 32.4 bits (72), Expect = 0.17
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
++I + P G ILDA G G K G +V+ D DP + ++ + +
Sbjct: 38 RLIDAMAP-RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVV 95
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 31.9 bits (71), Expect = 0.23
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG 58
+ V+A L + + ++D G G + K
Sbjct: 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS 51
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 31.6 bits (71), Expect = 0.23
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 3/110 (2%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
+ + ++ PG +L +G + V A++ + +
Sbjct: 66 ILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR 125
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
+ + + + VD + D+ +F ++G
Sbjct: 126 TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNG 175
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 31.8 bits (71), Expect = 0.24
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 18 GDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
G P + + +L P G+ +LD G + S S ++ LD D +
Sbjct: 26 GYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHS 85
Query: 74 GQETMRDYKEQ 84
++ +R Y +
Sbjct: 86 ARQNIRHYLSE 96
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5- methylpyrimidin-2(1H)-ONE, base
flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus}
SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 31.8 bits (71), Expect = 0.24
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM 78
P +++ +++L G +L+ G + R+F + + ++ DP A+
Sbjct: 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAE 84
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, DNA binding, DNA modification,
DNA methylation; HET: MTA; 1.75A {Rhodobacter
sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A*
1nw7_A* 1nw8_A
Length = 319
Score = 31.4 bits (70), Expect = 0.28
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 8 TMSSAIHHTIGDHVPV-LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
+S P ++E+++ L+ PG +LD G+G +R + G N I D
Sbjct: 214 NGNSLERVGHPTQKPAAVIERLVRALSH-PGSTVLDFFAGSGVTARVAIQEGRNSICTDA 272
Query: 67 DPFAVSCGQETMRDYKEQFSLFQAT 91
P Q+ + ++ + +A
Sbjct: 273 APVFKEYYQKQLTFLQDDGLIDKAR 297
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 31.5 bits (70), Expect = 0.29
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 12 AIHHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
++H + + +P L E L + + D G + + + + IA D D
Sbjct: 107 SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDA 166
Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
V E + A L + D+ D +
Sbjct: 167 RLVGFVDEALTRLNVPHRTNVAD---LLEDRLDEPADVTL 203
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 31.3 bits (70), Expect = 0.29
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-RDYKE 83
+LNP ILD GG + ++ N ++A++ + + R
Sbjct: 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL 134
Query: 84 QFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQI 118
+ A + +DY+ + D ++ D S I
Sbjct: 135 NTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNII 171
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A
Length = 267
Score = 31.4 bits (70), Expect = 0.30
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 24 LLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY 81
+ K ++ + N +I D G GG + V LD + R
Sbjct: 33 VTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS 92
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVV 108
Q + S ++ +D +
Sbjct: 93 GLQNRVTGIVGSMDDLPFRNEELDLIW 119
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics,
JCSG, PSI, protein structure initiative; 1.65A
{Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 31.5 bits (71), Expect = 0.31
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
+ +L+ G I+D G+G + V A ++ + + +
Sbjct: 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW 160
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 31.0 bits (69), Expect = 0.37
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 36 PGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
G +LD G GG + + G +D +++ + R+ K +F +F
Sbjct: 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 117
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 31.1 bits (70), Expect = 0.37
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
+ L+ L+ AG ++ + +D P A+ + + +
Sbjct: 43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW 96
Score = 28.8 bits (64), Expect = 2.1
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282
++ ++ + + K L GG L+ S R + V ++
Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAE-----TVITILTEALTE 182
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 30.9 bits (69), Expect = 0.39
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
L +L+ G G ++R + V ALD ++ D
Sbjct: 40 RLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDN 91
Score = 27.1 bits (59), Expect = 6.2
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
+ S A+ GG++ V E RL ++ +
Sbjct: 123 DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS 160
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, RNA-binding, rRNA
processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
PDB: 3id5_B*
Length = 232
Score = 30.8 bits (69), Expect = 0.45
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 3/89 (3%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
+ K + G +L +G + ++ P V +
Sbjct: 65 ILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR 124
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
F L + VD + D
Sbjct: 125 PNIFPLLADARFPQSYKSVVENVDVLYVD 153
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 30.9 bits (69), Expect = 0.46
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFA 70
+I + K++LD G G S K G+ VI +D
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSII 73
>2p7i_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PSI-2; 1.74A {Pectobacterium atrosepticum
SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Length = 250
Score = 30.7 bits (68), Expect = 0.53
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
P ++ P +L+ G ++ + +++ ++ A+S Q ++D
Sbjct: 31 PFMVRAFTPFFRP---GNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDG 87
Query: 82 KEQF 85
Sbjct: 88 ITYI 91
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43
Length = 252
Score = 30.4 bits (67), Expect = 0.54
Identities = 9/62 (14%), Positives = 22/62 (35%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
+E++ + +LD G G + + G V+ LD + + ++
Sbjct: 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL 88
Query: 84 QF 85
+
Sbjct: 89 KI 90
>2i6g_A Putative methyltransferase; 16420133, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MLY; 1.90A {Salmonella typhimurium
LT2} SCOP: c.66.1.44
Length = 199
Score = 30.6 bits (68), Expect = 0.60
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
+ + A APG+ LD G G S G +V A D +P +++ +
Sbjct: 15 GLTRTHSDVLAAAXVVAPGRT-LDLGCGNGRNSLYLAANGYDVTAWDXNPASMANLER 71
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 30.4 bits (68), Expect = 0.68
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
P +L+A G G + F + A D P + + +++
Sbjct: 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHA----DVYEWNGKG 102
Query: 95 LQDYVPDKGVDGVV 108
+V
Sbjct: 103 ELPAGLGAPFGLIV 116
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 1pry_A
Length = 227
Score = 30.1 bits (67), Expect = 0.72
Identities = 12/111 (10%), Positives = 33/111 (29%), Gaps = 5/111 (4%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
+ + PGK +L +G + + + ++ P + + +
Sbjct: 62 IMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER 121
Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV-SSMQIDCGDRGFSFQKSG 131
+ ++ ++Y V+F+ + D + K G
Sbjct: 122 R-NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 30.2 bits (67), Expect = 0.73
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDP----FAVSCGQETMRDYKEQFSLFQA 90
+ +LD G G + + G I +D + F D E
Sbjct: 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPD 99
Query: 91 TF 92
+
Sbjct: 100 KY 101
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genomics, JCSG;
HET: SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 30.0 bits (66), Expect = 0.76
Identities = 12/72 (16%), Positives = 22/72 (30%)
Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
H I V + ++ + + +LD G G R+ G + +D D V
Sbjct: 30 HGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDA 89
Query: 74 GQETMRDYKEQF 85
+
Sbjct: 90 ARAAGAGEVHLA 101
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 29.6 bits (65), Expect = 0.99
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
+ ++ P +LD G G + F K + L+ ++ ++ + D
Sbjct: 30 IADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLH 88
Query: 85 F 85
Sbjct: 89 Q 89
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 29.5 bits (65), Expect = 1.0
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
+I VILD G G ++ +G + L+ V ++T
Sbjct: 33 LIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHH 90
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 29.7 bits (65), Expect = 1.1
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
+ I P A V + A G ++ + AL A
Sbjct: 325 QKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAA 363
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest center for structural genomics,
protein structure initiative; 1.80A {Streptococcus
agalactiae}
Length = 230
Score = 29.6 bits (66), Expect = 1.2
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYK 82
L+KV + G +LD +MG IA + + + ++
Sbjct: 12 LQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG 69
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus HB8} PDB: 2yr0_A
Length = 263
Score = 29.2 bits (64), Expect = 1.2
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 24 LLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
+ + + ++P V L+ G G + G IALD D + ++ +
Sbjct: 26 IATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD 85
Query: 83 EQF 85
+
Sbjct: 86 RKV 88
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid; HET: SAM; 2.00A
{Escherichia coli}
Length = 200
Score = 29.4 bits (65), Expect = 1.3
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 6/101 (5%)
Query: 12 AIHHTIGDHVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
IH + + V L + + ILD G + A D D
Sbjct: 24 KIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDR 83
Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
++ + K + F + V D V
Sbjct: 84 AEIAFLSSIIGKLKTT---IKYRFLNKESDVYKGTYDVVFL 121
Score = 26.7 bits (58), Expect = 8.3
Identities = 3/41 (7%), Positives = 12/41 (29%)
Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
+ + +++ + + +I SL +
Sbjct: 119 VFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGK 159
>3cc8_A Putative methyltransferase; NP_977653.1, structural genomics,
joint center for structural genomics, JCSG; 1.64A
{Bacillus cereus atcc 10987}
Length = 230
Score = 29.4 bits (64), Expect = 1.3
Identities = 10/75 (13%), Positives = 25/75 (33%)
Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
++++ H + + K +LD +G + + G+ V ++ P A
Sbjct: 7 NSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEA 66
Query: 71 VSCGQETMRDYKEQF 85
+E +
Sbjct: 67 AEQAKEKLDHVVLGD 81
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, PSI, protein structure initiative; HET: SAM;
1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 29.1 bits (65), Expect = 1.4
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
++ + PG +L+A G+G + S VI+ ++ + + Q
Sbjct: 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 150
Query: 85 FS 86
Sbjct: 151 PP 152
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 29.2 bits (64), Expect = 1.4
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
P+ L + + + G V+LD G G + + G + ++ P +E
Sbjct: 221 PLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE 280
Query: 82 KEQFSL 87
FSL
Sbjct: 281 VPGFSL 286
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.30A
{Bacillus cereus atcc 14579} PDB: 2gh1_A
Length = 284
Score = 29.0 bits (64), Expect = 1.5
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
D+V L+ V I+D G G + GS +D ++ +
Sbjct: 8 DYVSFLVNTV---WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR 64
Query: 76 ETMRDYKEQF 85
E R
Sbjct: 65 ELFRLLPYDS 74
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.0 bits (64), Expect = 1.6
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82
LEKV + + + I D K S IA + Q+ +R
Sbjct: 12 LEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG 69
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 28.9 bits (64), Expect = 1.8
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMR 79
I+ L P P + + D G+G + + + + + +
Sbjct: 17 AISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAI 70
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 28.8 bits (63), Expect = 1.8
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 23 VLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMR 79
VL+ + + + +LD G GG + K + ++ D +V Q+
Sbjct: 19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE 78
Query: 80 DYKEQFS---LFQATFSQ 94
D K + +F A F
Sbjct: 79 DMKNRRDSEYIFSAEFIT 96
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia
virus}
Length = 302
Score = 28.6 bits (63), Expect = 1.9
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 23 VLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMR 79
+L+ L+ + + +L FG G + + ++A D D A++ G E
Sbjct: 33 LLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN 92
Query: 80 DYKEQF 85
Sbjct: 93 KLNSGI 98
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein,
beta-barrel, structural genomics, protein structure
initiative, PSI-2; 2.48A {Lactobacillus salivarius
UCC118} SCOP: b.124.1.1
Length = 128
Score = 28.6 bits (64), Expect = 1.9
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 24/120 (20%)
Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMRDYK 82
+K+ + + ++LD G G S+ C + S+ ++ + +D + +DY
Sbjct: 13 KKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKD-------MDYKKDYN 65
Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP---LDMRMS 138
E S + KG + D M+I + L +S
Sbjct: 66 EVID------SNIGK-FYYKGYSKMYMDDN---MKISLNTNNSLLRLTGDNSGELMPALS 115
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 28.8 bits (63), Expect = 2.0
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
+ I P A V + A G ++ ++ALK
Sbjct: 325 QKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKD 363
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Length = 477
Score = 28.8 bits (63), Expect = 2.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
+ I P A V + A G ++ ++ALK
Sbjct: 340 QKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKD 378
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics,
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 28.6 bits (62), Expect = 2.2
Identities = 11/80 (13%), Positives = 24/80 (30%)
Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
P ++D G G ++ + VI LD A+ + + L
Sbjct: 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVP 113
Query: 94 QLQDYVPDKGVDGVVFDLGV 113
+ + + D ++
Sbjct: 114 EQAAQIHSEIGDANIYMRTG 133
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 28.4 bits (62), Expect = 2.4
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
+ L +AL+ GG +++ L + + F +++
Sbjct: 268 VRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLV 310
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB:
3m6v_A* 3m6u_A* 3m6x_A*
Length = 464
Score = 28.4 bits (63), Expect = 2.5
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
V LL+P PG+ +LD GG + + ++A + D V E + +
Sbjct: 93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP 152
Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110
++ QA L + V+ D
Sbjct: 153 LAVTQAPPRALAEAFGTY-FHRVLLD 177
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in europe; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 28.3 bits (62), Expect = 2.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
+ +N E+ LR +AL+ GG L+V+ +E +FF++ M
Sbjct: 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLT 310
>1or8_A Protein arginine N-methyltransferase 1; protein arginine
methylation, adoMet-dependent methylation, transferase;
HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB:
1orh_A* 1ori_A*
Length = 340
Score = 28.1 bits (62), Expect = 2.8
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 36 PGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFA 70
KV+LD G G K G VI ++ +
Sbjct: 57 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS 92
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.0 bits (62), Expect = 2.9
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
E + + A +K GG L++++ +DR+ A S +M
Sbjct: 264 REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMV 309
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 28.1 bits (61), Expect = 2.9
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
+ V+ + P GK I D G G + V +D + QE +
Sbjct: 23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADHY-EVTGVDLSEEMLEIAQEKAMETNR 79
Query: 84 QFSLFQ 89
+
Sbjct: 80 HVDFWV 85
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 28.1 bits (62), Expect = 3.1
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
GK + T G + +F G++V+ D + A + + ++ Q +
Sbjct: 11 GKCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDI 69
Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
+ Q+ D + LG ++D P DM
Sbjct: 70 TSEQEL--SALADFAISKLG----KVDILVNNAGGGGPKPFDM 106
>3gio_A Putative uncharacterized protein; antiparallel beta sheet,
four-helix bundle, loop, DNA binding protein; 2.40A
{Helicobacter pylori}
Length = 186
Score = 27.8 bits (61), Expect = 3.2
Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
G+ +S +V+ +++ +I ++ R+A IV + + A T + I ++
Sbjct: 49 GVDSSHIVDGKKTEEIEKI----ATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMF 104
Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
I+ + + L I++N EE+ +R+
Sbjct: 105 IQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRA 138
>1efe_A Mini-proinsulin, M2PI; linker, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.1.1.1
Length = 60
Score = 28.1 bits (63), Expect = 3.3
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
V ++ + CG+RGF + GI
Sbjct: 12 VEALYLVCGERGFFYTPKTRRYPGDVKRGI 41
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransferase domain;
2.90A {Escherichia coli}
Length = 479
Score = 27.8 bits (61), Expect = 3.5
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 232 LRSAEKALKAGGLLI--VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
+ SA AL+ GG L+ + + E+ V + AV + + P +++T
Sbjct: 229 IDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPD--AVEFLPLGDLFPGANKALT 286
Query: 290 KK 291
++
Sbjct: 287 EE 288
>1mg1_A Protein (HTLV-1 GP21 ectodomain/maltose-binding protein chimera);
human T cell leukemia virus type 1, envelope protein;
HET: MAL; 2.50A {Human t-lymphotropic virus 1} SCOP:
c.94.1.1 h.3.2.1
Length = 450
Score = 27.6 bits (60), Expect = 3.8
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
+ I P A V + A G ++ + AL A
Sbjct: 321 QKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAA 359
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 27.6 bits (61), Expect = 3.9
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
++A +PG I++A G+G + + V++ + E ++
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA 141
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 27.5 bits (60), Expect = 4.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
P A V + A G ++ ++AL A
Sbjct: 331 PNIPQMSAFWYAVRTAVINAASGRQTVDEALAA 363
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 27.5 bits (60), Expect = 4.3
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
G +++ GG+++ + +I++D G +R + + +
Sbjct: 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKET-IFDDIDRA 83
Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
+ VD VV D I D S+Q
Sbjct: 84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQI 117
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 27.7 bits (61), Expect = 4.5
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 25 LEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYK 82
LEK + + GK LD GG++ + G V ALD + +R +
Sbjct: 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALD---VGTNQLAWKIRSDE 81
Query: 83 EQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQ 117
+ Q F D+ S+
Sbjct: 82 RVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISLD 117
>1b9g_A Protein (growth factor IGF-1); NMR {Homo sapiens} SCOP: g.1.1.1
Length = 57
Score = 27.4 bits (61), Expect = 4.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 113 VSSMQIDCGDRGFSFQKSG 131
V ++Q CGDRGF F K G
Sbjct: 11 VDALQFVCGDRGFYFNKPG 29
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 27.3 bits (60), Expect = 4.9
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
E + +N + DAT G G S +G V A ++ P + +R
Sbjct: 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALL 130
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 27.3 bits (60), Expect = 5.0
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
G+V+L T GG Y+ +F + G+ V+ D G+ +
Sbjct: 9 GRVVL-VTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKG------------SSAA 55
Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
++ + + +G V V + + + G +D+ ++ +GI ++ +
Sbjct: 56 DKVVEEIRRRGGKAVANYDSVEAGEKLVKT---ALDTFGRIDVVVNNAGILRDRSFSRIS 112
Query: 153 VKDLTRILGI 162
+D I +
Sbjct: 113 DEDWDIIQRV 122
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransferase-related
protein; TM1389, structural genomics; HET: SAI; 2.35A
{Thermotoga maritima MSB8} SCOP: c.66.1.41
Length = 260
Score = 27.3 bits (59), Expect = 5.1
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLI--VVSFHSLEDRLVKK 260
V + +E + + L GLLI V +F++ ++++K
Sbjct: 123 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEK 165
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A*
Length = 340
Score = 27.1 bits (59), Expect = 5.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 36 PGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71
KV+LD G G S K G V+ +D+
Sbjct: 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY 100
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure
initiative; 1.75A {Thermoplasma acidophilum} SCOP:
c.66.1.32
Length = 200
Score = 27.3 bits (60), Expect = 5.8
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76
I G+ ++DA G G + +G +V A D DP A+ +
Sbjct: 44 IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKR 92
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, coiled coil, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3
Length = 210
Score = 27.0 bits (59), Expect = 5.9
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK 82
L + +L +G + + A++ E +R+
Sbjct: 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN 105
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protein structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 26.9 bits (59), Expect = 6.5
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
GK IL T A G F + G++++A+DR+ + E + + + A
Sbjct: 6 GKTIL-VTGAASGIGRAALDLFAREGASLVAVDREERLL---AEAVAALEAEAIAVVADV 61
Query: 93 S------QLQDYVPDK--GVDGVVFDLGVS 114
S + ++ + GV GV+
Sbjct: 62 SDPKAVEAVFAEALEEFGRLHGVAHFAGVA 91
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 26.9 bits (59), Expect = 7.1
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 36 PGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
PG ++D GG Y + +IA D P G + ++ +
Sbjct: 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGD----FRDELVM 77
Query: 93 SQLQDYVPDKGVDGVVFD 110
L + V D V V+ D
Sbjct: 78 KALLERVGDSKVQVVMSD 95
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus
suis} PDB: 3cxr_A*
Length = 291
Score = 27.0 bits (59), Expect = 7.3
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
GK+ L T + G + ++ K G+ ++ D + V G + +
Sbjct: 34 GKIAL-VTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCDV 92
Query: 93 SQLQD 97
+
Sbjct: 93 TDEDG 97
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, human, structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 26.8 bits (59), Expect = 7.5
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
G+++L T G + F K+ S ++ D + + + + F
Sbjct: 31 GEIVL-ITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDC 89
Query: 93 SQLQD 97
S +D
Sbjct: 90 SNRED 94
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 26.7 bits (58), Expect = 8.4
Identities = 37/234 (15%), Positives = 70/234 (29%), Gaps = 33/234 (14%)
Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
+ + RD + + + D + L D GV + GV S
Sbjct: 179 RLTMCRDDRLNAEDGQQVDDMETAVDLALL----------DPGVRVGLLRGGVMSHPRYR 228
Query: 121 GDRGFSFQKSGPLDMR-MSCSGISASDVVNQANVKDLTRILGILGEEKQASR-------- 171
G R FS +G ++++ +S GIS D + + + + +++ +
Sbjct: 229 GKRVFS---AG-INLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIE 284
Query: 172 ---IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228
+A L YFS LR+
Sbjct: 285 KPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVS 344
Query: 229 AQGLR-----SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK-VMAVRHMI 276
Q + A++ + VV L+ +++ G V+A R M+
Sbjct: 345 RQVILEGRRIWAKEPEARLLVDEVVEPDELDAA-IERSLTRLDGDAVLANRRML 397
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structural genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 26.6 bits (58), Expect = 8.4
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 35 AP--GKVILDATFGAGG----YSRSFCKMGSNVIALDRDP 68
AP G+V + T + G + CK G+ V R
Sbjct: 1 APMNGQVCV-VTGASRGIGRGIALQLCKAGATVYITGRHL 39
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 26.6 bits (58), Expect = 8.5
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
G L T G+ G +G+ V R+ + E R+
Sbjct: 21 GTTAL-VTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL 79
Query: 93 SQLQD 97
+
Sbjct: 80 LSRTE 84
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, joint center for structural genomics, JCSG;
1.50A {Cytophaga hutchinsonii atcc 33406}
Length = 394
Score = 26.6 bits (58), Expect = 8.5
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 48 GGYSRSFCKMGSNVIALDRDPFAVSC 73
G Y R+FCK+ +++ D + +
Sbjct: 30 GIYPRAFCKIIPDILGGDPEYCNIMH 55
>3b3f_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase, catalytic domain, alternative
splicing, chromatin regulator; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A
Length = 341
Score = 26.7 bits (58), Expect = 8.6
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 36 PGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71
K++LD G+G S + G + A++ A
Sbjct: 46 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQ 82
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 369
Score = 26.5 bits (58), Expect = 8.7
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 14/101 (13%)
Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
+ I R E +R E G + + +R +
Sbjct: 123 DRLIEDLEILTSLQR-------EYF--HMRPEEDGATMFGPIEITEQTKRGERNIHC--- 170
Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
V + IP N FQ +++ + + R
Sbjct: 171 --QKDVGEGGYQIPFNVENIEFQKHDASMIIAIETGGMYAR 209
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 26.7 bits (59), Expect = 9.0
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 37 GKVILDATFGAGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
GK L T + G +R K+GS VI + + + K+ +++
Sbjct: 14 GKTSL-ITGASSGIGSAIARLLHKLGSKVIISGSNEEKL---KSLGNALKDNYTIEVCNL 69
Query: 93 S---QLQDYVPDKG-VDGVVFDLGVSSM 116
+ + + + +D +V + G++S
Sbjct: 70 ANKEECSNLISKTSNLDILVCNAGITSD 97
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA
binding protein/structural protein complex; HET: EPE;
1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1
PDB: 1ra4_A* 1sds_A
Length = 120
Score = 26.4 bits (58), Expect = 9.9
Identities = 8/89 (8%), Positives = 21/89 (23%), Gaps = 7/89 (7%)
Query: 221 VNNEIEELAQ-------GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
+ E+ + G KA++ G +V+ ++ V +
Sbjct: 16 IQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPY 75
Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
+ S + +
Sbjct: 76 AYVASKQDLGKAAGLEVAASSVAIINEGD 104
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.134 0.377
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,754,439
Number of extensions: 123087
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 150
Length of query: 341
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 248
Effective length of database: 3,438,538
Effective search space: 852757424
Effective search space used: 852757424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)