RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764512|ref|YP_003065529.2| preprotein tranlocase protein
[Candidatus Liberibacter asiaticus str. psy62]
(108 letters)
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux,
transporter, antiporter, novel transmembrane helix,
ACRB, inner membrane; HET: AIC; 3.50A {Escherichia
coli}
Length = 37
Score = 41.1 bits (97), Expect = 7e-05
Identities = 8/37 (21%), Positives = 25/37 (67%)
Query: 19 SPLEMAGLFFVLAVVWYFLLIRPQRQQLQRRAEMLRN 55
SP+ + + V +++YF+++RPQ+++ + +++ +
Sbjct: 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.8 bits (85), Expect = 0.001
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 33/106 (31%)
Query: 3 TTVYAQSDAPAITSATSPLEMAGLF--FVLAVVWYFLLIRPQRQQLQRRAEMLRN-LR-- 57
T +A D P T+P E+ G F +V ++V + ++ + ++L L
Sbjct: 45 TEGFAADDEP-----TTPAELVGKFLGYVSSLV--------EPSKVGQFDQVLNLCLTEF 91
Query: 58 -----RGDSIVTAAGIVGKVVRVIDDLELEVEIAENVRVRVVRSFV 98
G+ I A L E + ++++++
Sbjct: 92 ENCYLEGNDIHALAA----------KLLQENDTTLVKTKELIKNYI 127
Score = 27.2 bits (60), Expect = 0.96
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 24/73 (32%)
Query: 7 AQSDAPAITSAT-S-PLEMAGLFFVLAVVWYFLLIR-----PQRQQLQRRAEMLRNLR-- 57
D + S S PL G+ + + Y + + P E+ L+
Sbjct: 224 NTPDKDYLLSIPISCPL--IGV---IQLAHYVVTAKLLGFTP--------GELRSYLKGA 270
Query: 58 RGDS--IVTAAGI 68
G S +VTA I
Sbjct: 271 TGHSQGLVTAVAI 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.007
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 5 VYAQSDAPAIT-SATSPLE 22
+YA APA+ AT +E
Sbjct: 31 LYADDSAPALAIKAT--ME 47
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant protein; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 26.5 bits (58), Expect = 1.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 40 RPQRQQLQRRAEMLRNLRRGDSIVTAAGIV 69
+QQLQ + +R+ GD +V G+
Sbjct: 101 SRSQQQLQDSHQKIRHFNEGDVLVIPPGVP 130
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
IAP-binding, hydrolase; 2.00A {Homo sapiens} SCOP:
b.36.1.4 b.47.1.1
Length = 325
Score = 26.4 bits (57), Expect = 1.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 56 LRRGDSIVTAAGIVGKVVRVIDDLELEVEIAENVRVRVVR 95
LR GD I+ I ++V+ +D+ V + V++ R
Sbjct: 274 LRPGDVIL---AIGEQMVQNAEDVYEAVRTQSQLAVQIRR 310
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein,
pisum sativum L., SEED storage protein, storage protein,
plant protein; 2.61A {Pisum sativum}
Length = 496
Score = 25.2 bits (54), Expect = 4.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 40 RPQRQQLQRRAEMLRNLRRGDSIVTAAGIV 69
+ + ++ + R + + R GD I GIV
Sbjct: 98 QGEGRRYRDRHQKVNRFREGDIIAVPTGIV 127
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes,
ligase, drug design, ATP-binding, cytoplasm, magnesium,
metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP:
c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A*
3img_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A*
1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* 1n2i_A* 1n2j_A* 1n2o_A
2a7x_A* ...
Length = 301
Score = 24.7 bits (53), Expect = 4.8
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 48 RRAEMLRNLRRGDSIVTAAGIVGKVVRVIDDLELEV 83
R + G + A +G R++D++ +E+
Sbjct: 254 RDIGLGPMPLNGSGRLLVAARLGTT-RLLDNIAIEI 288
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia
solanacearum MOLK2}
Length = 335
Score = 24.4 bits (51), Expect = 5.9
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 49 RAEMLRNLRRGDSIVTAAGIVGKVVRVIDDLELEVEIAENVRVRVVR 95
+ ML++ G + +V V + + + + + + +VR
Sbjct: 273 KTSMLQDAEAGRGPLEIDALVASVREIGLHVGVPTPQIDTL-LGLVR 318
>3m1c_A GH, envelope glycoprotein H; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 762
Score = 24.5 bits (52), Expect = 6.1
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 14 ITSATSPLEMAGLFFVLAVVWYFLLIRPQRQQLQRRAEMLRNLRRGDSIVTAAGIVG 70
+T+A P + L ++ +LL RP+ L E R + G+
Sbjct: 47 VTTAEFPRDPGQLLYIPKT---YLLGRPRNASLPELPEAGPTSRPPAEVTQLKGLSH 100
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD,
one-carbon metabolism; HET: NAD; 2.30A {Burkholderia
pseudomallei 1710B} PDB: 3glq_A*
Length = 494
Score = 24.1 bits (52), Expect = 7.7
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 19/70 (27%)
Query: 48 RRAEMLRNLRRGDSIVTAAG-----------------IVGKVVRVIDDLELEVEIAENVR 90
R M + D VTA G IV + D E++V +
Sbjct: 322 RVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHF--DSEIDVASTRQYQ 379
Query: 91 VRVVRSFVSE 100
++ V
Sbjct: 380 WENIKPQVDH 389
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A
Length = 459
Score = 24.2 bits (52), Expect = 7.8
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 40 RPQRQQLQRRAEMLRNLRRGDSIVTAAGIV 69
+ + + + +R R GD +V AG+
Sbjct: 115 QSAGSAFKDQHQKIRPFREGDLLVVPAGVS 144
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 23.8 bits (51), Expect = 9.2
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 42 QRQQLQRRAEMLRNLRRGDSIVTAAGIV 69
Q QQ Q + + GD I G+
Sbjct: 116 QSQQQQDSHQKVHRFNEGDLIAVPTGVA 143
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein,
storage protein, plant protein; 2.98A {Brassica napus}
Length = 466
Score = 24.0 bits (51), Expect = 9.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 44 QQLQRRAEMLRNLRRGDSIVTAAGIV 69
Q + + + ++R GD+I T G+
Sbjct: 137 QGFRDMHQKVEHIRTGDTIATHPGVA 162
>3ofq_U 50S ribosomal protein L24; protein biosynthesis, ribosomes, RNA,
tRNA, transfer, antibi EXIT, peptidyl, ribosomal
subunit, large; 3.10A {Escherichia coli} PDB: 2j28_U*
3fik_U 2wwq_U 3ofr_U* 3i1n_U 1vs8_U 1vs6_U 1vt2_U
3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3kcr_U 3orb_U*
3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S ...
Length = 102
Score = 23.9 bits (52), Expect = 9.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 56 LRRGDS-IVTA---AGIVGKVVRVIDDLELEVEIAENVRVRVVR 95
+RR D IV G GKV V+ ++ VE N+ + +
Sbjct: 4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVE-GINLVKKHQK 46
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.135 0.368
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 849,343
Number of extensions: 35374
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 25
Length of query: 108
Length of database: 5,693,230
Length adjustment: 72
Effective length of query: 36
Effective length of database: 3,947,662
Effective search space: 142115832
Effective search space used: 142115832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)