RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764512|ref|YP_003065529.2| preprotein tranlocase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
          MurC {Haemophilus influenzae [TaxId: 727]}
          Length = 215

 Score = 25.6 bits (55), Expect = 1.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 49 RAEMLRNLRRGDSIVTAAGIVGK 71
          RA+ML  + R    +  AG  GK
Sbjct: 1  RAQMLAEIMRFRHGIAVAGTHGK 23


>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
           (Pantoate-beta-alanine ligase, PanC) {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 286

 Score = 25.2 bits (54), Expect = 1.6
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 48  RRAEMLRNLRRGDSIVTAAGIVGKVVRVIDDLELEV 83
           R   +      G   +  A  +G   R++D++ +E+
Sbjct: 251 RDIGLGPMPLNGSGRLLVAARLGTT-RLLDNIAIEI 285


>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean
           (Phaseolus vulgaris), phaseolin [TaxId: 3885]}
          Length = 200

 Score = 24.9 bits (54), Expect = 1.9
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 26  LFFVLAVVWYFLLIRPQRQQLQRRAEMLRNLRRGDSIVTAAGIVGKVVRVIDDLELE-VE 84
           L  V +     +L++P  ++ +       N    D     AG +  +V      +L  ++
Sbjct: 65  LLVVRSGSAILVLVKPDDRR-EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQ 123

Query: 85  IAENVRVRVVRSF 97
           +A  V    +  F
Sbjct: 124 LAMPVNNPQIHEF 136


>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 185

 Score = 23.8 bits (51), Expect = 3.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 43 RQQLQRRAEMLRNLRRGDSIVTA 65
          R   +RR  + R  R  D +  A
Sbjct: 7  RVSTERRLALARRARDADDLFGA 29


>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
           (Glycine max), glycinin A3B4 [TaxId: 3847]}
          Length = 245

 Score = 23.7 bits (51), Expect = 5.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 40  RPQRQQLQRRAEMLRNLRRGDSIVTAAGIV 69
              +QQLQ   + +R+   GD +V   G+ 
Sbjct: 95  SRSQQQLQDSHQKIRHFNEGDVLVIPPGVP 124


>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
           (Glycine max), proglycinin [TaxId: 3847]}
          Length = 239

 Score = 23.3 bits (50), Expect = 5.2
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)

Query: 40  RPQRQQLQRRAEM---LRNLRRGDSIVTAAGIV 69
             QR Q  R  +    + N R GD I    G+ 
Sbjct: 89  PQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVA 121


>d3cdda1 b.106.1.1 (A:181-348) Baseplate protein gpP {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 168

 Score = 22.5 bits (48), Expect = 9.3
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 44  QQLQRRAEMLRNLRRGDSIVTAAGIVG 70
           +   +R +  R    G S +    + G
Sbjct: 81  EGAAKRGQWERQRSIGKSNMAEYTVTG 107


>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase
           (Pantoate-beta-alanine ligase, PanC) {Escherichia coli
           [TaxId: 562]}
          Length = 282

 Score = 22.5 bits (47), Expect = 9.3
 Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 59  GDSIVTAAGIVGKVVRVIDDLELEV 83
             +++  A  +G   R+ID+  +E+
Sbjct: 259 KRAVILVAAWLGDA-RLIDNKMVEL 282


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,105
Number of extensions: 15066
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 22
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)