BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764512|ref|YP_003065529.2| preprotein tranlocase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764512|ref|YP_003065529.2| preprotein tranlocase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 108

 Score =  214 bits (546), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MFTTVYAQSDAPAITSATSPLEMAGLFFVLAVVWYFLLIRPQRQQLQRRAEMLRNLRRGD 60
           MFTTVYAQSDAPAITSATSPLEMAGLFFVLAVVWYFLLIRPQRQQLQRRAEMLRNLRRGD
Sbjct: 1   MFTTVYAQSDAPAITSATSPLEMAGLFFVLAVVWYFLLIRPQRQQLQRRAEMLRNLRRGD 60

Query: 61  SIVTAAGIVGKVVRVIDDLELEVEIAENVRVRVVRSFVSEVQSKSEPV 108
           SIVTAAGIVGKVVRVIDDLELEVEIAENVRVRVVRSFVSEVQSKSEPV
Sbjct: 61  SIVTAAGIVGKVVRVIDDLELEVEIAENVRVRVVRSFVSEVQSKSEPV 108


>gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 310

 Score = 21.2 bits (43), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 78  DLELEVEIAENVRVRVVRSFVSEVQSKSEP 107
           D E+ VEI ENVR   V  F+  VQS S P
Sbjct: 34  DREVFVEIGENVRGEDV--FI--VQSTSCP 59


>gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 328

 Score = 20.8 bits (42), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 46  LQRRAEMLRNLRRGDSIVTAAGIVGKVVRVIDD 78
            + R + L N+R+    V   GI+G +  +IDD
Sbjct: 182 FEDRLQTLENVRKSGIKVCCGGILG-LGEMIDD 213


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.135    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,090
Number of Sequences: 1233
Number of extensions: 1729
Number of successful extensions: 8
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 32 (16.9 bits)