HHsearch alignment for GI: 255764513 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=99.38 E-value=4.8e-11 Score=95.29 Aligned_cols=430 Identities=19% Similarity=0.254 Sum_probs=219.9
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 705634843388785015999999999999-----718849999704866638867999999998865898886765588
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAK-----RTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGG 80 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~-----~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g 80 (492)
T Consensus 20 ~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G 99 (521)
T COG1384 20 EYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFG 99 (521)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 68983476898873214289898999999999974886579998148751012799999868999870996434899766
Q ss_pred CCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHH-------HHHHHH------HHH-----HHCC-----CCCCCCC
Q ss_conf 7676323262899999999999889824514889997-------766887------664-----3100-----0236655
Q gi|255764513|r 81 AYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERL-------EEMRRA------QRK-----RNIP-----SRYDGHC 137 (492)
Q Consensus 81 ~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel-------~~~r~~------~~~-----~~~~-----~~Y~~~~ 137 (492)
T Consensus 100 ~~~Sya--~hf~--~~f~~~l~~~Gi~~-E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~~~~e~~~P~~piC 174 (521)
T COG1384 100 CCDSYA--EHFL--RPFEEFLDEFGIEV-EFVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGRELEEDWSPFMPIC 174 (521)
T ss_pred CCCHHH--HHHH--HHHHHHHHHCCCCE-EEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 533599--9999--99999998649864-998767756445589999999865799999999851876667723022256
Q ss_pred CCCCH-HHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57883-33001120257740788622431143047513402136432356410004532489867887644444443112
Q gi|255764513|r 138 LKLSS-QEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVAR 216 (492)
Q Consensus 138 r~l~~-~e~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviR 216 (492)
T Consensus 175 ~kcGri~~t~v~~~d~~-~~v~Y~Ce~-Gh~g~v~ir~g~~KL~WRv--d--------Wp~RW-------~~lgVd~EPf 235 (521)
T COG1384 175 EKCGRILTTPVIEWDGE-GTVEYRCEC-GHEGEVDIRGGEGKLPWRV--D--------WPMRW-------AALGVDFEPF 235 (521)
T ss_pred CCCCCCCEEEEEEECCC-CEEEEEECC-CCCCEEECCCCCCCCCCCC--C--------CCCHH-------HCCCCCCCCC
T ss_conf 55587030688996378-449998668-8610462233676443576--7--------50010-------0008310357
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 2354302-----47889999985100000101455531101322122343-30245666297737799899850676665
Q gi|255764513|r 217 GEEWISS-----VPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSE 290 (492)
Q Consensus 217 g~d~~~~-----t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~ 290 (492)
T Consensus 236 GKDH~a~ggSydtg~~I-~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~--~pE~lry~~~r~-kP~r 311 (521)
T COG1384 236 GKDHAAAGGSYDTGKRI-AREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSDWLEVA--PPEVLRYLIART-KPNR 311 (521)
T ss_pred CCCCCCCCCCHHHHHHH-HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEECHHHHHHHC--CHHHEEEEEEEC-CCCC
T ss_conf 85313456763789999-9986499999777558898548866556878578599998753--984733235405-8874
Q ss_pred CCHHHCCHH----HHHHHHH-HHHC--CCCCCCCHHHHHHHHHHHHHHC--C--------CC--------------HHHH
Q ss_conf 530110146----7776520-2113--7554420156556643555512--6--------99--------------8999
Q gi|255764513|r 291 DDDELMDMQ----QLIHHFD-LHHL--SKAGAVFDKQKLDWLNGRWIRE--K--------LS--------------TTEF 339 (492)
Q Consensus 291 ~d~Eifsl~----eli~~Fd-L~~I--~Ks~A~FD~eKL~wlN~qyIr~--~--------l~--------------~~el 339 (492)
T Consensus 312 -~~~-~d~~~~il~lvDEydr~e~~Y~~~e~~~-~~e~~~--r~yels~~~~pP~~~~~~vpFr~l~~l~qi~~~~~e~i 386 (521)
T COG1384 312 -HID-FDFDLGILKLVDEYDRLERIYFGEEDAK-EDERLK--RIYELSHPGNPPERLPYQVPFRHLAVLVQIANAEEEDI 386 (521)
T ss_pred -CEE-CCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHC--CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf -433-1788774477899999999873232220-456650--72786348998656788998799999998707755889
Q ss_pred HHHHH-HHHCCCCCCCCHHHHHHHCCCH----HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98644-4200001232206888725320----356677556752246788854554331486679999999999840588
Q gi|255764513|r 340 LSRVS-QWMKEKDRLTQALTLAQSRITT----LSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQ 414 (492)
Q Consensus 340 ~~~l~-~~l~~~~~l~~il~likeRi~t----L~Di~~~~~ffF~~~~~~d~e~~~k~~~~~e~~~~iL~~~~~~L~~~~ 414 (492)
T Consensus 387 l~~~~~~~~~~~~--~~~~~~l~~~i~~A~~W~~~yaP-~~~kf~~~----e~~-~~~els~~~~~~~L~~~a~~les~~ 458 (521)
T COG1384 387 LEILIRRYLPDAD--PDTIEDLDERIEYAINWLRDYAP-EKVKFSIL----EKP-PEAELSEDAKLEALEDLAEFLESIQ 458 (521)
T ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHCC-CCEEECCC----CCC-CCCHHCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999970468888--33589999999999999998396-33155556----666-3101146779999999999876313
Q ss_pred CCCHH-HHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 89988-899999999999579823310126788964888888999998849599999999999
Q gi|255764513|r 415 IWKRE-NIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAI 476 (492)
Q Consensus 415 ~w~~e-~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~aL 476 (492)
T Consensus 459 ~~~~e~~~~~~vy~~a~~~~~~~~~~F~~~Y~vliGk~~GPRlg~Fla~lg~dfv~~rir~~~ 521 (521)
T COG1384 459 KASLEVELHNEVYEVAKKKGILPRAFFQALYRVLIGKERGPRLGSFLALLGVDFVIRRIRLAL 521 (521)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHCC
T ss_conf 110257888999998875389879999999999808877860889999847599999998309