HHsearch alignment for GI: 255764513 and conserved domain: PRK00260

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=99.01  E-value=5.5e-08  Score=74.56  Aligned_cols=225  Identities=22%  Similarity=0.250  Sum_probs=133.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCC---CCC----------CHHHHHHHHHHHHHCCCCC-
Q ss_conf             843388785015999999999999-----718849999704866---638----------8679999999988658988-
Q gi|255764513|r   12 APSPTGEPHIGTAYTALFNYLIAK-----RTGGKFILRIEDTDS---KRS----------TLESENAVMQSLKWCGLNW-   72 (492)
Q Consensus        12 aPsPtG~lH~G~~rtal~n~l~a~-----~~~g~f~lRieDtd~---~R~----------~~~~~~~i~~~l~wlgl~~-   72 (492)
T Consensus        30 GPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDidDKii~~a~~~~~~~~~~~~~~~~~f~~d~~~L~i~~p  109 (460)
T PRK00260         30 GPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALGVLRP  109 (460)
T ss_pred             CCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98488873200030899999999999964993499982375419999999981969999999999999999999489998


Q ss_pred             CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             86765588767632326289999999999988982451-----4889997766887664310002366555788333001
Q gi|255764513|r   73 DEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRC-----FCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIER  147 (492)
Q Consensus        73 De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c-----~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~  147 (492)
T Consensus       110 ~~~~---------r~t~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~--------------~~~~Y-G---~Ls~~~~~~  162 (460)
T PRK00260        110 DIEP---------RATEHIPEIIELIERLIEKGHAYEADGDVYFDVR--------------KFPDY-G---KLSGRNLDD  162 (460)
T ss_pred             CCCC---------CCCCCHHHHHHHHHHHHHCCCEEEECCEEEECCC--------------CCCCH-H---HCCCCCCHH
T ss_conf             5224---------3014799999999999857952884787996355--------------55330-3---005653021


Q ss_pred             HHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECC-------------CCCHHHHHHHHH-HHHHHHHHH
Q ss_conf             120257740788622431143047513402136432356410004-------------532489867887-644444443
Q gi|255764513|r  148 LSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKS-------------DGMPTYHLANVI-DDHLMKITH  213 (492)
Q Consensus       148 ~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~-------------dg~ptY~~a~vv-DD~~m~ith  213 (492)
T Consensus       163 -~~~g~----rv~~~~----------------~K~~p~DFaLWK~~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~  221 (460)
T PRK00260        163 -LQAGA----RVEVAE----------------EKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETF  221 (460)
T ss_pred             -HHCCC----CCCCCC----------------CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             -21156----567663----------------447855322127888888777698888798742263799998759975


Q ss_pred             HHC--CCC----CCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             112--235----43024788999998510000-0101455531101322122343-302456662977377998998506
Q gi|255764513|r  214 VAR--GEE----WISSVPKHILLYQYFNFPIP-EFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLF  285 (492)
Q Consensus       214 viR--g~d----~~~~t~~q~~l~~al~~~~p-~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLG  285 (492)
T Consensus       222 DIH~GG~DL~FPHHENEiAQs~a--~~~~~~a~yW~H~g~l-~i~g~KMSKSlgN~iti~dll~~-y~~~~lR~~lLs~h  297 (460)
T PRK00260        222 DIHGGGSDLIFPHHENEIAQSEA--ATGKPFANYWMHNGFV-TVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLSAH  297 (460)
T ss_pred             EEEECCCCCCCCCCCCHHHHHHH--HHCCCCCCEEEEEEEE-EECCEEEECCCCCCCCHHHHHHH-HCHHHHHHHHHHCC
T ss_conf             47624526778996109999988--6489865245651057-63671750357870019999987-07799999998546


Q ss_pred             CCC
Q ss_conf             766
Q gi|255764513|r  286 VHK  288 (492)
Q Consensus       286 ws~  288 (492)
T Consensus       298 YR~  300 (460)
T PRK00260        298 YRS  300 (460)
T ss_pred             CCC
T ss_conf             899