HHsearch alignment for GI: 255764513 and conserved domain: PRK00260
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=99.01 E-value=5.5e-08 Score=74.56 Aligned_cols=225 Identities=22% Similarity=0.250 Sum_probs=133.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCC---CCC----------CHHHHHHHHHHHHHCCCCC-
Q ss_conf 843388785015999999999999-----718849999704866---638----------8679999999988658988-
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAK-----RTGGKFILRIEDTDS---KRS----------TLESENAVMQSLKWCGLNW- 72 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~-----~~~g~f~lRieDtd~---~R~----------~~~~~~~i~~~l~wlgl~~- 72 (492)
T Consensus 30 GPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDidDKii~~a~~~~~~~~~~~~~~~~~f~~d~~~L~i~~p 109 (460)
T PRK00260 30 GPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALGVLRP 109 (460)
T ss_pred CCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98488873200030899999999999964993499982375419999999981969999999999999999999489998
Q ss_pred CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 86765588767632326289999999999988982451-----4889997766887664310002366555788333001
Q gi|255764513|r 73 DEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRC-----FCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIER 147 (492)
Q Consensus 73 De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c-----~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~ 147 (492)
T Consensus 110 ~~~~---------r~t~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~--------------~~~~Y-G---~Ls~~~~~~ 162 (460)
T PRK00260 110 DIEP---------RATEHIPEIIELIERLIEKGHAYEADGDVYFDVR--------------KFPDY-G---KLSGRNLDD 162 (460)
T ss_pred CCCC---------CCCCCHHHHHHHHHHHHHCCCEEEECCEEEECCC--------------CCCCH-H---HCCCCCCHH
T ss_conf 5224---------3014799999999999857952884787996355--------------55330-3---005653021
Q ss_pred HHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECC-------------CCCHHHHHHHHH-HHHHHHHHH
Q ss_conf 120257740788622431143047513402136432356410004-------------532489867887-644444443
Q gi|255764513|r 148 LSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKS-------------DGMPTYHLANVI-DDHLMKITH 213 (492)
Q Consensus 148 ~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~-------------dg~ptY~~a~vv-DD~~m~ith 213 (492)
T Consensus 163 -~~~g~----rv~~~~----------------~K~~p~DFaLWK~~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~ 221 (460)
T PRK00260 163 -LQAGA----RVEVAE----------------EKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETF 221 (460)
T ss_pred -HHCCC----CCCCCC----------------CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf -21156----567663----------------447855322127888888777698888798742263799998759975
Q ss_pred HHC--CCC----CCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 112--235----43024788999998510000-0101455531101322122343-302456662977377998998506
Q gi|255764513|r 214 VAR--GEE----WISSVPKHILLYQYFNFPIP-EFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLF 285 (492)
Q Consensus 214 viR--g~d----~~~~t~~q~~l~~al~~~~p-~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLG 285 (492)
T Consensus 222 DIH~GG~DL~FPHHENEiAQs~a--~~~~~~a~yW~H~g~l-~i~g~KMSKSlgN~iti~dll~~-y~~~~lR~~lLs~h 297 (460)
T PRK00260 222 DIHGGGSDLIFPHHENEIAQSEA--ATGKPFANYWMHNGFV-TVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLSAH 297 (460)
T ss_pred EEEECCCCCCCCCCCCHHHHHHH--HHCCCCCCEEEEEEEE-EECCEEEECCCCCCCCHHHHHHH-HCHHHHHHHHHHCC
T ss_conf 47624526778996109999988--6489865245651057-63671750357870019999987-07799999998546
Q ss_pred CCC
Q ss_conf 766
Q gi|255764513|r 286 VHK 288 (492)
Q Consensus 286 ws~ 288 (492)
T Consensus 298 YR~ 300 (460)
T PRK00260 298 YRS 300 (460)
T ss_pred CCC
T ss_conf 899