HHsearch alignment for GI: 255764513 and conserved domain: PRK12268
>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=98.99 E-value=4.4e-08 Score=75.19 Aligned_cols=280 Identities=15% Similarity=0.186 Sum_probs=136.3
Q ss_pred EEEECCCCCCCCCCHHHHHHH-HHHHHHHH--HCCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHH
Q ss_conf 056348433887850159999-99999999--718849999704866----------------63886799999999886
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTA-LFNYLIAK--RTGGKFILRIEDTDS----------------KRSTLESENAVMQSLKW 67 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rta-l~n~l~a~--~~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l~w 67 (492)
T Consensus 6 ~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~~~~ 85 (558)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKEDFEK 85 (558)
T ss_pred EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98479988889855231114198999999999837998797584064749999999985999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCEECCC--CHHHHHHHHHHHHHCCCEEEC-----CCCHHHHHHHHHHHHHHHCCCCC--C----
Q ss_conf 5898886765588767632326--289999999999988982451-----48899977668876643100023--6----
Q gi|255764513|r 68 CGLNWDEGPDIGGAYGPYRQSE--RKNIYQPYVQNLLEKKLAFRC-----FCSTERLEEMRRAQRKRNIPSRY--D---- 134 (492)
Q Consensus 68 lgl~~De~~~~~g~~~p~~QS~--r~~~y~~~~~~L~~~g~aY~c-----~~t~eel~~~r~~~~~~~~~~~Y--~---- 134 (492)
T Consensus 86 lgis~D~f---------~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl-~-d~~v~G~cP~c~~~~~~G 154 (558)
T PRK12268 86 LGISYDNY---------TRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFL-P-DRYVEGTCPYCGYEKARG 154 (558)
T ss_pred CCCCCCCC---------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-C-HHHHCCCCCCCCCCCCCC
T ss_conf 19837768---------668988999999999999998899330135343684112313-1-233154067768743567
Q ss_pred CCC----CCCCHHHHHHH--HHCCCCCEEE------EEECCCCE---------EECCCCCCCCEE-CCCCCCCCCCEECC
Q ss_conf 655----57883330011--2025774078------86224311---------430475134021-36432356410004
Q gi|255764513|r 135 GHC----LKLSSQEIERL--SQEQKKHVVR------LTVPNQGS---------CVFQDKVYGEME-IPWNAVDMQVLLKS 192 (492)
Q Consensus 135 ~~~----r~l~~~e~~~~--~~~g~~~~iR------~k~p~~~~---------~~~~D~i~G~~~-~~~~~~~D~vi~r~ 192 (492)
T Consensus 155 d~ce~cg~~~~~~dli~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~D~~ISR~ 234 (558)
T PRK12268 155 DQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIESGTDWPPNVLNFTLNWLKEGLKPRAITRD 234 (558)
T ss_pred CHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 32532476478577248856778994447734530214187789999998538877889999999998633756545553
Q ss_pred C--CCH------------------HHHHHHH--------HHHH--------HHHHHHHHCCCCCCCHHHHHHHHHH----
Q ss_conf 5--324------------------8986788--------7644--------4444431122354302478899999----
Q gi|255764513|r 193 D--GMP------------------TYHLANV--------IDDH--------LMKITHVARGEEWISSVPKHILLYQ---- 232 (492)
Q Consensus 193 d--g~p------------------tY~~a~v--------vDD~--------~m~ithviRg~d~~~~t~~q~~l~~---- 232 (492)
T Consensus 235 ~~WGipiP~~~~~~~~iyVW~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~-GkDii---~FH~v~wpa~l~ 310 (558)
T PRK12268 235 LPWGIPIPFEGAEGKVFYVWFDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFI-GKDNI---PFHSVIWPAMLL 310 (558)
T ss_pred CCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEC-CCCCC---HHHHHHHHHHHH
T ss_conf 87865788555689679886578722034336545416985679872789984277643-66654---347879999997
Q ss_pred HHH--HCCCHHH-HHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHH
Q ss_conf 851--0000010-1455531101322122343-302456662977377998998506766655301101467776520
Q gi|255764513|r 233 YFN--FPIPEFI-HLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 (492)
Q Consensus 233 al~--~~~p~f~-H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~Fd 306 (492)
T Consensus 311 a~~~~~~lP~~i~~~g~-~~~~G~KmSKS~Gnvi~p~~~i~~-yg~D~lRy~L~~~~~-~--~~D~~fs~~~~~~~~N 383 (558)
T PRK12268 311 GSGEPYKLPTAIVSSEY-LTYEGQKFSKSRGWGIWVDDALER-LPPDYLRYYLAANAP-E--NSDTDFTWEEFIRRVN 383 (558)
T ss_pred HCCCCCCCCCEEEEEEE-EEECCCCCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHCCC-C--CCCCCCCHHHHHHHHH
T ss_conf 33798778877877556-874684114557887798999987-490777899885488-8--8888879999999999