HHsearch alignment for GI: 255764513 and conserved domain: cd00672

>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.82  E-value=0.006  Score=40.32  Aligned_cols=169  Identities=20%  Similarity=0.199  Sum_probs=94.7

Q ss_pred             CCCCCCCCCHHHHHHHHH-----HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf             843388785015999999-----999999718849999704866638867999999998865898886765588767632
Q gi|255764513|r   12 APSPTGEPHIGTAYTALF-----NYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPYR   86 (492)
Q Consensus        12 aPsPtG~lH~G~~rtal~-----n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~~   86 (492)
T Consensus        27 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDID---------DKII~~A~~~~~~~~el-----------   86 (213)
T cd00672          27 GPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDID---------DKIIKRAREEGLSIKEV-----------   86 (213)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC---------HHHHHHHHHCCCCHHHH-----------
T ss_conf             9968899876534257689999999996399358999726751---------89999999839999999-----------


Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCE
Q ss_conf             32628999999999998898245148899977668876643100023665557883330011202577407886224311
Q gi|255764513|r   87 QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGS  166 (492)
Q Consensus        87 QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~~  166 (492)
T Consensus        87 a~~y~~~f~~d~~~L---ni~---------------------~p~~~Pr--------------------a----------  112 (213)
T cd00672          87 AEYYTAEFFEDMKAL---NVL---------------------PPDVYPR--------------------V----------  112 (213)
T ss_pred             HHHHHHHHHHHHHHH---CCC---------------------CCCCCCC--------------------E----------
T ss_conf             999999999999982---899---------------------9981354--------------------5----------


Q ss_pred             EECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHC-CCHHHHH
Q ss_conf             43047513402136432356410004532489867887644444443112235430247889999985-100-0001014
Q gi|255764513|r  167 CVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-NFP-IPEFIHL  244 (492)
Q Consensus       167 ~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al-~~~-~p~f~H~  244 (492)
T Consensus       113 --WH------i--ECsaM~-----------~~~lg~~~DIH~GG~DL~FP---HHeNE~AQs---~a~~~~~~a~~W~H~  165 (213)
T cd00672         113 --WH------I--ECSAMS-----------MKYLGETFDIHGGGVDLIFP---HHENEIAQS---EAAFGKPFARYWLHT  165 (213)
T ss_pred             --EE------E--ECHHHH-----------HHHHCCCEEEECCCCCCCCC---CCCCHHHHH---HHHHCCCCCCEEEEH
T ss_conf             --20------1--459998-----------98828962563476356589---970499998---886589960100034


Q ss_pred             HHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHH
Q ss_conf             55531101322122343-3024566629773779989985
Q gi|255764513|r  245 PLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLAL  283 (492)
Q Consensus       245 pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLal  283 (492)
T Consensus       166 g~l-~~~g~KMSKSlgN~~~i~dll-~~~~~~~~R~~lls  203 (213)
T cd00672         166 GHL-TIDGEKMSKSLGNFITVRDAL-KKYDPEVLRLALLS  203 (213)
T ss_pred             HHH-HHCCCEECCCCCCEEEHHHHH-HCCCHHHHHHHHHH
T ss_conf             578-727564034578752699998-43999999999982