HHsearch alignment for GI: 255764513 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.82 E-value=0.006 Score=40.32 Aligned_cols=169 Identities=20% Similarity=0.199 Sum_probs=94.7
Q ss_pred CCCCCCCCCHHHHHHHHH-----HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 843388785015999999-----999999718849999704866638867999999998865898886765588767632
Q gi|255764513|r 12 APSPTGEPHIGTAYTALF-----NYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPYR 86 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~-----n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~~ 86 (492)
T Consensus 27 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDID---------DKII~~A~~~~~~~~el----------- 86 (213)
T cd00672 27 GPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDID---------DKIIKRAREEGLSIKEV----------- 86 (213)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC---------HHHHHHHHHCCCCHHHH-----------
T ss_conf 9968899876534257689999999996399358999726751---------89999999839999999-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCE
Q ss_conf 32628999999999998898245148899977668876643100023665557883330011202577407886224311
Q gi|255764513|r 87 QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGS 166 (492)
Q Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~~ 166 (492)
T Consensus 87 a~~y~~~f~~d~~~L---ni~---------------------~p~~~Pr--------------------a---------- 112 (213)
T cd00672 87 AEYYTAEFFEDMKAL---NVL---------------------PPDVYPR--------------------V---------- 112 (213)
T ss_pred HHHHHHHHHHHHHHH---CCC---------------------CCCCCCC--------------------E----------
T ss_conf 999999999999982---899---------------------9981354--------------------5----------
Q ss_pred EECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHC-CCHHHHH
Q ss_conf 43047513402136432356410004532489867887644444443112235430247889999985-100-0001014
Q gi|255764513|r 167 CVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-NFP-IPEFIHL 244 (492)
Q Consensus 167 ~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al-~~~-~p~f~H~ 244 (492)
T Consensus 113 --WH------i--ECsaM~-----------~~~lg~~~DIH~GG~DL~FP---HHeNE~AQs---~a~~~~~~a~~W~H~ 165 (213)
T cd00672 113 --WH------I--ECSAMS-----------MKYLGETFDIHGGGVDLIFP---HHENEIAQS---EAAFGKPFARYWLHT 165 (213)
T ss_pred --EE------E--ECHHHH-----------HHHHCCCEEEECCCCCCCCC---CCCCHHHHH---HHHHCCCCCCEEEEH
T ss_conf --20------1--459998-----------98828962563476356589---970499998---886589960100034
Q ss_pred HHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 55531101322122343-3024566629773779989985
Q gi|255764513|r 245 PLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLAL 283 (492)
Q Consensus 245 pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLal 283 (492)
T Consensus 166 g~l-~~~g~KMSKSlgN~~~i~dll-~~~~~~~~R~~lls 203 (213)
T cd00672 166 GHL-TIDGEKMSKSLGNFITVRDAL-KKYDPEVLRLALLS 203 (213)
T ss_pred HHH-HHCCCEECCCCCCEEEHHHHH-HCCCHHHHHHHHHH
T ss_conf 578-727564034578752699998-43999999999982