HHsearch alignment for GI: 255764513 and conserved domain: cd00802
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=1.1e-27 Score=208.39 Aligned_cols=134 Identities=32% Similarity=0.435 Sum_probs=101.6
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 05634843388785015999999999999718849999704866638867999999998865898886765588767632
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPYR 86 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~~ 86 (492)
T Consensus 1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~~~~~~~~idd~~~~~~~~a~~~---------~~~--------------- 56 (142)
T cd00802 1 VITRPGPYPTGPLHIGHARTALLNDVLARYGNVLFILGIDDTGLPIEDKAEKE---------GKL--------------- 56 (142)
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH---------CCC---------------
T ss_conf 91414889899641889999999999999819989998657992001167884---------448---------------
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCE
Q ss_conf 32628999999999998898245148899977668876643100023665557883330011202577407886224311
Q gi|255764513|r 87 QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGS 166 (492)
Q Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~~ 166 (492)
T Consensus 57 --------------------------~~~~~~~~~~~~~~~-----------------------------~~-------- 73 (142)
T cd00802 57 --------------------------PKEEVEENIEEIKED-----------------------------LK-------- 73 (142)
T ss_pred --------------------------CHHHHHHHHHHHHHH-----------------------------CE--------
T ss_conf --------------------------899999999999986-----------------------------52--------
Q ss_pred EECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHH------HHHHHHHCCCCCCCHHHHHHHHHHHHH--HCC
Q ss_conf 430475134021364323564100045324898678876444------444431122354302478899999851--000
Q gi|255764513|r 167 CVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHL------MKITHVARGEEWISSVPKHILLYQYFN--FPI 238 (492)
Q Consensus 167 ~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~------m~ithviRg~d~~~~t~~q~~l~~al~--~~~ 238 (492)
T Consensus 74 -------------------------------y~~~~~~~~~~~~~~~~~~~~~~~~G~D~~~~~~~~~~~~~~l~~~~~~ 122 (142)
T cd00802 74 -------------------------------YWFDSAADDLLLLGYPFYPVDLVLGGKDQIPHLELTRDLLKALGGKFPP 122 (142)
T ss_pred -------------------------------ECCCEEECHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf -------------------------------6340164348754667887657886621014769999999983778899
Q ss_pred CHHHHHHHHHHHHCCCCCCC
Q ss_conf 00101455531101322122
Q gi|255764513|r 239 PEFIHLPLIKNPDKSKLSKR 258 (492)
Q Consensus 239 p~f~H~pli~~~~g~klSKR 258 (492)
T Consensus 123 ~~~~~~~~l~~~~g~KmSKS 142 (142)
T cd00802 123 PEVLHHGLLLGEDGKKMSKS 142 (142)
T ss_pred CCEEEEEEEECCCCCCCCCC
T ss_conf 86786311488699867899