HHsearch alignment for GI: 255764513 and conserved domain: cd00812
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.56 E-value=4.5e-07 Score=68.33 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=45.4
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHCCCHH-HHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 2354302-----478899999851000001-01455531101322122343-302456662977377998998506
Q gi|255764513|r 217 GEEWISS-----VPKHILLYQYFNFPIPEF-IHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLF 285 (492)
Q Consensus 217 g~d~~~~-----t~~q~~l~~al~~~~p~f-~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLG 285 (492)
T Consensus 295 GkDii~fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~-~~G~KMSKS~Gn~v~p~~~l~~-yg~D~lR~~Ll~~~ 368 (376)
T cd00812 295 GKEHAVNHLLYSRFNHKALFDEGTKEPPKGLRVQGMVL-LEGEKMSKSKGNVVTPDEAIKK-YGADATRLYLLFAA 368 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEE-CCCEECCCCCCCCCCHHHHHHH-CCCHHHHHHHHHCC
T ss_conf 33542013679999999998646777982668757296-6996637789988498999988-59549999999449