HHsearch alignment for GI: 255764513 and conserved domain: cd00814
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.33 E-value=2.3e-11 Score=97.53 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=129.1
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCC
Q ss_conf 56348433887850159999999999997--18849999704866----------------6388679999999988658
Q gi|255764513|r 8 RVRIAPSPTGEPHIGTAYTALFNYLIAKR--TGGKFILRIEDTDS----------------KRSTLESENAVMQSLKWCG 69 (492)
Q Consensus 8 ~~RfaPsPtG~lH~G~~rtal~n~l~a~~--~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l~wlg 69 (492)
T Consensus 4 v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~~L~ 83 (319)
T cd00814 4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFKWLN 83 (319)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 96899878898553306889999999999996599569968777870899999998399879999999999999999849
Q ss_pred CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEE-----CCCCHH---------------HHHHHHHHHH---H
Q ss_conf 9888676558876763232628999999999998898245-----148899---------------9776688766---4
Q gi|255764513|r 70 LNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFR-----CFCSTE---------------RLEEMRRAQR---K 126 (492)
Q Consensus 70 l~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~-----c~~t~e---------------el~~~r~~~~---~ 126 (492)
T Consensus 84 I~~d~~~r~-------~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~ 156 (319)
T cd00814 84 ISFDYFGRT-------TSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLE 156 (319)
T ss_pred CCCCCCCCC-------CCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHH
T ss_conf 987867667-------8806899999999999978988884102636588764564664226378788997899999996
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHCCCCC--------EEEEEECCC--C-EEECCCCCCCCEECCCCCCCCCCEECCCCC
Q ss_conf 31000236655578833300112025774--------078862243--1-143047513402136432356410004532
Q gi|255764513|r 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKH--------VVRLTVPNQ--G-SCVFQDKVYGEMEIPWNAVDMQVLLKSDGM 195 (492)
Q Consensus 127 ~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~--------~iR~k~p~~--~-~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ 195 (492)
T Consensus 157 ~~~~~~~~----~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~------~~~~ 226 (319)
T cd00814 157 ENPDFIWP----ENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYYTD------EWGN 226 (319)
T ss_pred CCCCCCCC----HHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCC------CCCC
T ss_conf 09876468----0577888776543777200103555458988898885430021012340001466666------5687
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH----HHHHHHCCCHHH-HHHHHHHHHCCCCCCCCC-CCCHHHHHH
Q ss_conf 48986788764444444311223543024788999----998510000010-145553110132212234-330245666
Q gi|255764513|r 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILL----YQYFNFPIPEFI-HLPLIKNPDKSKLSKRRN-PTSISYYSA 269 (492)
Q Consensus 196 ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l----~~al~~~~p~f~-H~pli~~~~g~klSKR~~-~~~i~~~~~ 269 (492)
T Consensus 227 ~~~~~~-----~~~~~ih~~-G~Di---~~~H~~~~~a~~~a~~~~~~~~~~~~g~-l~~~GeKMSKSlGN~i~~~dll~ 296 (319)
T cd00814 227 SWWWND-----PWPELVHFI-GKDI---VPFHAIYWPAMLLGAGLPLPTRIFAHGY-LTVEGKKMSKSRGNVVDPDDLLE 296 (319)
T ss_pred CCCCCC-----CCCCEEEEE-CCCC---CCHHHHHHHHHHHHCCCCCCCEEEECCE-EEECCEECCCCCCCCCCHHHHHH
T ss_conf 644456-----884126784-4764---3188878999998569987868887023-99899463772997445999998
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 297737799899850
Q gi|255764513|r 270 MGYLPEALINFLALL 284 (492)
Q Consensus 270 ~GylPeAilNyLalL 284 (492)
T Consensus 297 ~-~~~d~lR~~lls~ 310 (319)
T cd00814 297 R-YGADALRYYLLRE 310 (319)
T ss_pred H-CCCHHEHHHHHCC
T ss_conf 7-7913566877616