HHsearch alignment for GI: 255764513 and conserved domain: pfam01406

>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=99.01  E-value=9.2e-09  Score=79.80  Aligned_cols=247  Identities=16%  Similarity=0.132  Sum_probs=136.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEECCCCCC---------C----CCHHHHHHHHHHHHHCCCCCC
Q ss_conf             8433887850159999999999997-----188499997048666---------3----886799999999886589888
Q gi|255764513|r   12 APSPTGEPHIGTAYTALFNYLIAKR-----TGGKFILRIEDTDSK---------R----STLESENAVMQSLKWCGLNWD   73 (492)
Q Consensus        12 aPsPtG~lH~G~~rtal~n~l~a~~-----~~g~f~lRieDtd~~---------R----~~~~~~~~i~~~l~wlgl~~D   73 (492)
T Consensus        16 gPt~Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~~~~~F~~~~~~L~I~~~   95 (301)
T pfam01406        16 GPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITAYTKDMDALNVLPP   95 (301)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99068997522336899999999999974994699967786317999999980986537999999999988998498289


Q ss_pred             CCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEC------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             6765588767632326289999999999988982451------4889997766887664310002366555788333001
Q gi|255764513|r   74 EGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRC------FCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIER  147 (492)
Q Consensus        74 e~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c------~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~  147 (492)
T Consensus        96 d~--------~~rtTehi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~---------------~~~yg~l~~~~~~~~~~  152 (301)
T pfam01406        96 DL--------EPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVYFDVSS---------------FPDYGKLSGQNLEQLEA  152 (301)
T ss_pred             CC--------CCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECC---------------CCCCCCCCCCCHHHHHC
T ss_conf             86--------87754357999999999997797687269988996667---------------46544046435777752


Q ss_pred             HHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHH----------HHHHHHHHHHHHHHHCC
Q ss_conf             12025774078862243114304751340213643235641000453248986----------78876444444431122
Q gi|255764513|r  148 LSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHL----------ANVIDDHLMKITHVARG  217 (492)
Q Consensus       148 ~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~----------a~vvDD~~m~ithviRg  217 (492)
T Consensus       153 ~-~~~~-~~~~k~~~~d-f~Lwk~~~~~~~~~~~p--------wg~~~PgWhie~~~~~~~~~g~~~DiH~~G~Di~~--  219 (301)
T pfam01406       153 G-ARGE-VGEGKRDPLD-FALWKASKEGEPSWDSP--------WGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKF--  219 (301)
T ss_pred             C-CCCC-CCCCCCCCCH-HHEECCCCCCCCCCCCC--------CCCCCCCCCEEEEHHHHHHCCCCCCEECCCEEECC--
T ss_conf             5-7766-4433258035-33211456678775577--------77898975466506778741898733027651013--


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             35430247889999985100000-101455531101322122343-3024566629773779989985067666553011
Q gi|255764513|r  218 EEWISSVPKHILLYQYFNFPIPE-FIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDEL  295 (492)
Q Consensus       218 ~d~~~~t~~q~~l~~al~~~~p~-f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Ei  295 (492)
T Consensus       220 -pH~~~~~A~~~--a~~~~~~~~~~~h~G~l~-~~G~KMSKSlGNvv~~~dl~~~-~g~d~~Ryfll~~~y~~----~~~  290 (301)
T pfam01406       220 -PHHENEIAQSE--AAFDQQLAKYWLHNGHLM-IEGEKMSKSLGNFLTIRDVLKR-YDPRILRYFLLSVHYRS----PLD  290 (301)
T ss_pred             -CCCHHHHHHHH--HHHCCCCCEEEEEEEEEE-ECCEECCCCCCCCCCHHHHHHH-CCHHHHHHHHHHCCCCC----CCC
T ss_conf             -55241999999--851999514999852798-7883866647873779999876-89999999998465899----878


Q ss_pred             CCHHHHHH
Q ss_conf             01467776
Q gi|255764513|r  296 MDMQQLIH  303 (492)
Q Consensus       296 fsl~eli~  303 (492)
T Consensus       291 fs~~~l~~  298 (301)
T pfam01406       291 FSEELLEQ  298 (301)
T ss_pred             CCHHHHHH
T ss_conf             79999997