HHsearch alignment for GI: 255764513 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=99.01 E-value=9.2e-09 Score=79.80 Aligned_cols=247 Identities=16% Similarity=0.132 Sum_probs=136.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEECCCCCC---------C----CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 8433887850159999999999997-----188499997048666---------3----886799999999886589888
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAKR-----TGGKFILRIEDTDSK---------R----STLESENAVMQSLKWCGLNWD 73 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~~-----~~g~f~lRieDtd~~---------R----~~~~~~~~i~~~l~wlgl~~D 73 (492)
T Consensus 16 gPt~Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~~~~~F~~~~~~L~I~~~ 95 (301)
T pfam01406 16 GPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITAYTKDMDALNVLPP 95 (301)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99068997522336899999999999974994699967786317999999980986537999999999988998498289
Q ss_pred CCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEC------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 6765588767632326289999999999988982451------4889997766887664310002366555788333001
Q gi|255764513|r 74 EGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRC------FCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIER 147 (492)
Q Consensus 74 e~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c------~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~ 147 (492)
T Consensus 96 d~--------~~rtTehi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~---------------~~~yg~l~~~~~~~~~~ 152 (301)
T pfam01406 96 DL--------EPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVYFDVSS---------------FPDYGKLSGQNLEQLEA 152 (301)
T ss_pred CC--------CCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECC---------------CCCCCCCCCCCHHHHHC
T ss_conf 86--------87754357999999999997797687269988996667---------------46544046435777752
Q ss_pred HHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHH----------HHHHHHHHHHHHHHHCC
Q ss_conf 12025774078862243114304751340213643235641000453248986----------78876444444431122
Q gi|255764513|r 148 LSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHL----------ANVIDDHLMKITHVARG 217 (492)
Q Consensus 148 ~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~----------a~vvDD~~m~ithviRg 217 (492)
T Consensus 153 ~-~~~~-~~~~k~~~~d-f~Lwk~~~~~~~~~~~p--------wg~~~PgWhie~~~~~~~~~g~~~DiH~~G~Di~~-- 219 (301)
T pfam01406 153 G-ARGE-VGEGKRDPLD-FALWKASKEGEPSWDSP--------WGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKF-- 219 (301)
T ss_pred C-CCCC-CCCCCCCCCH-HHEECCCCCCCCCCCCC--------CCCCCCCCCEEEEHHHHHHCCCCCCEECCCEEECC--
T ss_conf 5-7766-4433258035-33211456678775577--------77898975466506778741898733027651013--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 35430247889999985100000-101455531101322122343-3024566629773779989985067666553011
Q gi|255764513|r 218 EEWISSVPKHILLYQYFNFPIPE-FIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDEL 295 (492)
Q Consensus 218 ~d~~~~t~~q~~l~~al~~~~p~-f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Ei 295 (492)
T Consensus 220 -pH~~~~~A~~~--a~~~~~~~~~~~h~G~l~-~~G~KMSKSlGNvv~~~dl~~~-~g~d~~Ryfll~~~y~~----~~~ 290 (301)
T pfam01406 220 -PHHENEIAQSE--AAFDQQLAKYWLHNGHLM-IEGEKMSKSLGNFLTIRDVLKR-YDPRILRYFLLSVHYRS----PLD 290 (301)
T ss_pred -CCCHHHHHHHH--HHHCCCCCEEEEEEEEEE-ECCEECCCCCCCCCCHHHHHHH-CCHHHHHHHHHHCCCCC----CCC
T ss_conf -55241999999--851999514999852798-7883866647873779999876-89999999998465899----878
Q ss_pred CCHHHHHH
Q ss_conf 01467776
Q gi|255764513|r 296 MDMQQLIH 303 (492)
Q Consensus 296 fsl~eli~ 303 (492)
T Consensus 291 fs~~~l~~ 298 (301)
T pfam01406 291 FSEELLEQ 298 (301)
T ss_pred CCHHHHHH
T ss_conf 79999997