HHsearch results for GI: 255764513 and protein with PDBid: 1irx_A
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=0 Score=614.38 Aligned_cols=464 Identities=14% Similarity=0.041 Sum_probs=370.6
Q ss_pred CCCEEEECCCCCCCCCCHHHHH-----HHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8770563484338878501599-----99999999997188499997048666388679999999988658988867655
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAY-----TALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~r-----tal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
..++++||+|||||+|||||+| |||+|||+|++++|+|+|||||||+.|++++++..++. +|+|+.|||+|+.
T Consensus 19 ~~~~v~~~g~SPTG~lHIG~~R~av~~daL~n~L~a~g~~~~filrieDtD~~R~~~~~~~~~~~--~~lg~~~~e~p~~ 96 (523)
T 1irx_A 19 KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWK--DYLGMPISEVPDP 96 (523)
T ss_dssp CSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGG--GGTTSBGGGSCCT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHCCCHHHHHHHH--HHCCCCHHHCCCC
T ss_conf 87399943788998630247826289999999999769686999999898512013000999999--9769976655898
Q ss_pred CCCCCCEECCC--CHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 88767632326--2899999999999889824514889997766887664310002366555788333001120257740
Q gi|255764513|r 79 GGAYGPYRQSE--RKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHV 156 (492)
Q Consensus 79 ~g~~~p~~QS~--r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~ 156 (492)
+|.++||.|++ ++..|.+++..+.+.+.+|.|||+.++++..|+.+...+.++.|++.|++.+..+..........++
T Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (523)
T 1irx_A 97 WGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVY 176 (523)
T ss_dssp TSSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCCH
T ss_conf 87754499999988899999838754444627887515899999999997402231144201023123233454455521
Q ss_pred EEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH----HHH
Q ss_conf 7886224311430475134021364323564100045324898678876444444431122354302478899----999
Q gi|255764513|r 157 VRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHIL----LYQ 232 (492)
Q Consensus 157 iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~----l~~ 232 (492)
.+...+....+.+.|...+.........+|+++.|+||.|||+++++++++.|+|+|++||.||+.+++.|+. +++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~g~dh~~~~~~~~~~~~~~~~ 256 (523)
T 1irx_A 177 CPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKE 256 (523)
T ss_dssp CTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCHHHCCCCCEEECCCEEECCCCHHHHHHHHHHHH
T ss_conf 11457554147762785379986688732046406987355532620211278736875712103784067888999986
Q ss_pred HHHHCCCHHHHHHHH-HHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHH------HHHHH
Q ss_conf 851000001014555-31101322122343302456662977377998998506766655301101467------77652
Q gi|255764513|r 233 YFNFPIPEFIHLPLI-KNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ------LIHHF 305 (492)
Q Consensus 233 al~~~~p~f~H~pli-~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~e------li~~F 305 (492)
++||.+|.|+|+|+| ++.+|+|||||+|......++..+|.|+|+.+|+++.+|+...+ +....+ -...|
T Consensus 257 ~~~~~~p~~~h~~~l~~~~~~~KmSKr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~ 333 (523)
T 1irx_A 257 VYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIK---IDLGLGILNLYDEFEKV 333 (523)
T ss_dssp HHCCCCCBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEE---ECCSTTHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHH
T ss_conf 068888657898357617755456666666214999987079999899873788765655---02101467777778877
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHH------------HCCCCCCCCHHHHHHHCCC
Q ss_conf 0211375544201565566435555126998--------9999864442------------0000123220688872532
Q gi|255764513|r 306 DLHHLSKAGAVFDKQKLDWLNGRWIREKLST--------TEFLSRVSQW------------MKEKDRLTQALTLAQSRIT 365 (492)
Q Consensus 306 dL~~I~Ks~A~FD~eKL~wlN~qyIr~~l~~--------~el~~~l~~~------------l~~~~~l~~il~likeRi~ 365 (492)
+-...+.+++.|+..++.|++..++.. ++. ..+.. +... .........+.....+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 411 (523)
T 1irx_A 334 ERIYFGVEGGKGDDEELRRTYELSMPK-KPERLVAQAPFRFLAV-LVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVK 411 (523)
T ss_dssp HHHHTTSCC-----CHHHHHHHHHCSS-CCCCCCCCCCHHHHHH-HTTCTTCCHHHHHHHHHHTTSSCSSCCHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHCCCHHHHHH-HHHHHCCCCHHHHHHHHHHHCCHHHCCHHHHHHHH
T ss_conf 402346105555457888887663135-7345542044899987-77652478589999886630033223666689999
Q ss_pred HHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEE
Q ss_conf 035667-7556752246788854554331486679999999999840588899888999999999995798233101267
Q gi|255764513|r 366 TLSALP-QMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLF 444 (492)
Q Consensus 366 tL~Di~-~~~~ffF~~~~~~d~e~~~k~~~~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLR 444 (492)
.+.++. ++..+||.+...+............+..+++|..+.+.++..++|+.++|++.++++++++|+|+|++|+|||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~l~~~l~~~~~~~~e~i~~~i~~iake~g~k~k~lf~~lR 491 (523)
T 1irx_A 412 LRINLARNWVKKYAPEDVKFSILEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLY 491 (523)
T ss_dssp HHHHHHHHHHHHTSCGGGCCCCCSSCCCCCCCHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999844565534552024554489899999999999985378999999999999999995979879999999
Q ss_pred EEEECCCCCCCHHHHHHHHCHHHHHHHHHH
Q ss_conf 889648888889999988495999999999
Q gi|255764513|r 445 LAITGSKYSLPLFDSIEILGRSVVYFRLRH 474 (492)
Q Consensus 445 iALTG~~~GP~L~eil~lLGkeetl~RL~~ 474 (492)
+||||+++||+|+++|.+|||++|++||+.
T Consensus 492 ~aLtG~~~GP~L~~~l~~LGke~vl~RL~~ 521 (523)
T 1irx_A 492 RLFIGKERGPRLASFLASLDRSFVIKRLRL 521 (523)
T ss_dssp HHHHSSSSCSCHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCCCCCHHHHHHHHCHHHHHHHHCC
T ss_conf 999198889898999999599999998745