HHsearch results for GI: 255764513 and protein with PDBid: 2cfo_A
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=0 Score=1133.87 Aligned_cols=471 Identities=35% Similarity=0.555 Sum_probs=448.6
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 70563484338878501599999999999971884999970486663886799999999886589888676558876763
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPY 85 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~ 85 (492)
.|||||||||||+|||||||||||||+|||++||+|||||||||++|+++||++.|+++|+||||+||| |||
T Consensus 1 ~vrtRfaPsPtG~lHiG~~rtal~n~~~a~~~~G~~iLRieDtD~~R~~~~~~~~I~~~L~wlGl~~d~--------~~~ 72 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE--------GPY 72 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSE--------EEE
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC--------CCE
T ss_conf 922762889898541899999999999999809989999687997747879999999999978999999--------776
Q ss_pred ECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 23262899999999999889824514889997766887664310002366555788333001120257740788622431
Q gi|255764513|r 86 RQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQG 165 (492)
Q Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~ 165 (492)
+||+|+++|+++|++|+++|+||+||||+|||++.|+.+.+.|.+|.|+++||+++.+|...+..+|++||||||+|.++
T Consensus 73 ~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~~~~~~~~e~~~~~~~g~~~~~R~k~~~~~ 152 (492)
T 2cfo_A 73 FQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDR 152 (492)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTC
T ss_pred EHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 17217999999999999869957727999999999987633799998746664100666765665599806999737888
Q ss_pred EEECCCCCCCCEECCCCCC-CCCCEECCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 1430475134021364323-564100045-----3248986788764444444311223543024788999998510000
Q gi|255764513|r 166 SCVFQDKVYGEMEIPWNAV-DMQVLLKSD-----GMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239 (492)
Q Consensus 166 ~~~~~D~i~G~~~~~~~~~-~D~vi~r~d-----g~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p 239 (492)
.+.|+|.|+|++.+++..+ +|+||+|+| |+||||||||||||+|||||||||+||++|||+|++||+||||++|
T Consensus 153 ~~~~~D~v~g~~~~~~~~~~~d~ii~~~~~~~~dg~ptY~~a~~vDD~~~~ithviRg~d~~~~t~~~~~~~~~l~~~~p 232 (492)
T 2cfo_A 153 QIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP 232 (492)
T ss_dssp EEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC
T ss_pred CEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 53565330005764100257973464045767777532775444067556767787352012553499999875257998
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 01014555311013221223433024566629773779989985067666553011014677765202113755442015
Q gi|255764513|r 240 EFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDK 319 (492)
Q Consensus 240 ~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~ 319 (492)
.|+|+|||++++|+|||||+++.+|.+||++||+|+||+|||++||||++.+++||||++||++.|++++|+||||+||+
T Consensus 233 ~~~h~pll~~~~g~klSKr~~~~~v~~~r~~G~~peAl~NyLa~LGws~~~~~~Eifsleeli~~Fdl~~i~ks~A~FD~ 312 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDW 312 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCCSTTBCSSCEECCH
T ss_pred CEEEHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 36537463166787323238975477787679980899999999489998886512558999999998504655443589
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCC----------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 655664355551269989999864442000----------0123220688872532035667755675224678885455
Q gi|255764513|r 320 QKLDWLNGRWIREKLSTTEFLSRVSQWMKE----------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESF 389 (492)
Q Consensus 320 eKL~wlN~qyIr~~l~~~el~~~l~~~l~~----------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~ 389 (492)
+||+|+|++||+ +++.+++.+.+.++++. .+++.++++++|+|+++++|+.+.+.|||.++..++++..
T Consensus 313 ~KL~~iN~~~Ir-~l~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~vi~lik~ri~~l~di~~~~~~ff~~~~~~d~e~~ 391 (492)
T 2cfo_A 313 DKLNWLNRQYIQ-QLEPEEFLAELIPLWQGAGYAFDEERDRPWLFDLAQLLQPGLNTLREAIDQGAVFFIPSVTFDSEAM 391 (492)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHGGGCSSGGGHHHHHHHHHSSSCCCCHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999998-0999999999888888517675322201789999999752255288888765554079888798999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHH-H
Q ss_conf 433148667999999999984058889988899999999999579823310126788964888888999998849599-9
Q gi|255764513|r 390 KSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSV-V 468 (492)
Q Consensus 390 ~k~~~~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkee-t 468 (492)
.+ +..+++..+|..+.+.|.+.+.|+.++|+++++++++++++|+|++|+|||+||||+++||+|+++|++||+++ +
T Consensus 392 ~k--~~~~~~~~iL~~l~~~L~~~~~~~~e~i~~~ik~i~e~~giK~k~l~~pLR~ALTG~~~GP~L~~~l~lLGk~e~~ 469 (492)
T 2cfo_A 392 AQ--LGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWD 469 (492)
T ss_dssp HH--HTSTTHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHSSSSCSCHHHHHHHHHHHTCH
T ss_pred HH--HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHH
T ss_conf 88--4685589999999998636897899999999999999949888888999999991999093999999997753745
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998866576
Q gi|255764513|r 469 YFRLRHAIALVSSLVQNHK 487 (492)
Q Consensus 469 l~RL~~aL~~l~~~~~~~~ 487 (492)
+.||+.||+++.+.+=||.
T Consensus 470 ~~RL~~aL~~~~~~~~~~~ 488 (492)
T 2cfo_A 470 EPRLAAALKQAQTTSLEHH 488 (492)
T ss_dssp HHHHHHHHHHHHHHC-C--
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999998611674102