HHsearch results for GI: 255764513 and protein with PDBid: 3afh_A
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=1142.87 Aligned_cols=455 Identities=36% Similarity=0.676 Sum_probs=423.5
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87705634843388785015999999999999718849999704866638867999999998865898886765588767
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYG 83 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~ 83 (492)
.+.|||||||||||+|||||||||||||+|||++||+|||||||||++|++++|++.|+++|+||||+|||||..+|++|
T Consensus 23 ~~~vr~RfaPsPtG~lHiG~~rtal~n~~~a~~~~g~f~lRieDtD~~R~~~~~~~~i~~~L~wlgl~~De~~~~~g~~~ 102 (488)
T 3afh_A 23 FELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFG 102 (488)
T ss_dssp --CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 88557873879898541899999999999999829989998688998758879999999999976998776867788887
Q ss_pred CEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 63232628999999999998898245148899977668876643100023665557883330011202577407886224
Q gi|255764513|r 84 PYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPN 163 (492)
Q Consensus 84 p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~ 163 (492)
||+||+|+++|+++|++|+++|+||+||||++|+...|..+...... ....|.++++|||+|+
T Consensus 103 py~QS~r~~~y~~~~~~L~~~g~ay~c~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~r~~~~~ 165 (488)
T 3afh_A 103 PYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHE-----------------YKEKGHPVTIKFKVLP 165 (488)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHH-----------------HHHTTCCEEEEECCCS
T ss_pred CEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC-----------------CCCCCCCCEEEECCCC
T ss_conf 74185489999999999986599654557999999885201107854-----------------3346886202201688
Q ss_pred CCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 31143047513402136432356410004532489867887644444443112235430247889999985100000101
Q gi|255764513|r 164 QGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIH 243 (492)
Q Consensus 164 ~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H 243 (492)
+.+.|+|+|+|++++++++++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|+|+|
T Consensus 166 -~~~~~~D~i~G~~~~~~~~l~D~vi~r~dg~pty~~a~vvdD~~~~ithviRg~d~~~~t~~~~~l~~~lg~~~P~~~H 244 (488)
T 3afh_A 166 -GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMH 244 (488)
T ss_dssp -SEEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEE
T ss_pred -CCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf -8864353403466537766788389943898002122486464478867844754546809999999982678982377
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 45553110132212234330245666297737799899850676665530110146777652021137554420156556
Q gi|255764513|r 244 LPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLD 323 (492)
Q Consensus 244 ~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~ 323 (492)
+|||++++|+|||||+|+++|.+||++||+||||+|||++||||+ +++|+|+++||++.||+++|+||||+||++||+
T Consensus 245 ~pli~~~~~~klSKR~g~~si~~yr~~GylPeAl~NyLa~LGws~--~~~Ei~sleELie~FdL~~I~KS~A~FD~~KL~ 322 (488)
T 3afh_A 245 IPLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRV--EGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLE 322 (488)
T ss_dssp ECCEECTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCC--SSCSCCCHHHHGGGCCGGGSCSSCEECCHHHHH
T ss_pred ECCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 223007998754532488601248656999579999999837998--620464499999726832356765420388899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCC---------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 64355551269989999864442000---------012322068887253203566775567522467888545543314
Q gi|255764513|r 324 WLNGRWIREKLSTTEFLSRVSQWMKE---------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTAL 394 (492)
Q Consensus 324 wlN~qyIr~~l~~~el~~~l~~~l~~---------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~ 394 (492)
|+|++||+ +++.+++.+.+.++... ..++.++++++++|+++++|+.+.+.|||.++..++.+...+. +
T Consensus 323 wlN~~yIr-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~keri~~l~Dl~~~~~~ff~~~~~~d~~~~~K~-l 400 (488)
T 3afh_A 323 WVNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKF-L 400 (488)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTSCSSHHHHHHHHHHHHCSCCCCCHHHHHHT-T
T ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH-C
T ss_conf 97899998-489999999999999974321651124567654156552002007889987764158644598999876-2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHH
Q ss_conf 86679999999999840588899888999999999995798233101267889648888889999988495999999999
Q gi|255764513|r 395 CPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRH 474 (492)
Q Consensus 395 ~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~ 474 (492)
.++.+..+|..+.+.++++++|+.++|+++++++++++++|+|++|+|||+||||+++||+|+++|++|||++|++||++
T Consensus 401 ~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~~iK~k~l~~pLRiALTG~~~GP~L~dim~lLGkee~l~RL~~ 480 (488)
T 3afh_A 401 KREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLER 480 (488)
T ss_dssp TSTTHHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHSCSSCSCHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 81779999999999986078489999999999999980996889999999999299909199999999199999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|255764513|r 475 AIALVS 480 (492)
Q Consensus 475 aL~~l~ 480 (492)
||++|+
T Consensus 481 aL~~Lk 486 (488)
T 3afh_A 481 TLQFLK 486 (488)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999871