Query gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 492
No_of_seqs 247 out of 3465
Neff 6.7
Searched_HMMs 23785
Date Wed Jun 1 03:08:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764513.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ja2_A Glutamyl-tRNA synthetas 100.0 0 0 1155.0 34.1 481 1-487 1-495 (498)
2 1j09_A Glutamyl-tRNA synthetas 100.0 0 0 1138.2 36.0 460 7-477 2-468 (468)
3 2cfo_A Glutamyl-tRNA synthetas 100.0 0 0 1133.9 36.0 471 6-487 1-488 (492)
4 3afh_A Glutamyl-tRNA synthetas 100.0 0 0 1142.9 28.6 455 4-480 23-486 (488)
5 2o5r_A Glutamyl-tRNA synthetas 100.0 0 0 1118.5 32.2 458 7-477 14-480 (481)
6 3al0_C Glutamyl-tRNA(Gln) amid 100.0 0 0 1126.9 25.4 454 5-480 128-590 (592)
7 1qtq_A GLNRS, protein (glutami 100.0 0 0 766.3 17.6 315 4-329 24-358 (553)
8 2hz7_A Glutaminyl-tRNA synthet 100.0 0 0 725.9 17.4 318 4-332 64-401 (851)
9 1nzj_A Hypothetical protein YA 100.0 0 0 695.3 21.9 289 2-321 1-297 (298)
10 3aii_A Glutamyl-tRNA synthetas 100.0 0 0 676.3 18.9 284 3-331 93-398 (553)
11 1irx_A Lysyl-tRNA synthetase; 100.0 0 0 614.4 4.4 464 4-474 19-521 (523)
12 3c8z_A Cysteinyl-tRNA syntheta 99.2 1.6E-10 6.9E-15 90.2 11.9 236 11-283 43-321 (414)
13 1li5_A Cysrs, cysteinyl-tRNA s 99.2 4.8E-10 2E-14 87.0 13.6 225 12-286 29-298 (461)
14 1iq0_A Arginyl-tRNA synthetase 99.1 2.2E-10 9.2E-15 89.4 7.8 293 5-327 103-467 (592)
15 2csx_A Methionyl-tRNA syntheta 99.1 4.8E-10 2E-14 87.1 8.0 281 1-306 1-344 (497)
16 3fnr_A Arginyl-tRNA synthetase 99.0 7.6E-08 3.2E-12 72.1 16.8 269 5-323 30-329 (464)
17 2d5b_A Methionyl-tRNA syntheta 99.0 4.4E-10 1.9E-14 87.3 5.1 93 9-110 7-120 (500)
18 1f7u_A Arginyl-tRNA synthetase 99.0 2.7E-08 1.1E-12 75.2 14.1 136 182-327 331-483 (607)
19 2x1l_A Methionyl-tRNA syntheta 99.0 2.4E-09 1E-13 82.3 8.5 274 9-306 17-359 (524)
20 3kfl_A Methionyl-tRNA syntheta 98.9 2E-08 8.5E-13 76.0 11.7 91 11-110 33-143 (564)
21 3h99_A Methionyl-tRNA syntheta 98.9 8.6E-07 3.6E-11 65.0 19.5 96 7-109 21-134 (560)
22 2zue_A Arginyl-tRNA synthetase 98.8 1.3E-07 5.6E-12 70.4 12.4 135 187-327 320-501 (629)
23 1rqg_A Methionyl-tRNA syntheta 98.6 4E-07 1.7E-11 67.2 10.6 279 8-306 6-393 (722)
24 3hzr_A Tryptophanyl-tRNA synth 98.4 4.5E-05 1.9E-09 53.3 15.6 193 7-283 85-294 (386)
25 2g36_A Tryptophanyl-tRNA synth 98.4 0.00023 9.9E-09 48.4 20.4 204 3-284 11-230 (340)
26 2cyb_A Tyrosyl-tRNA synthetase 98.3 8.5E-06 3.6E-10 58.2 11.0 196 8-284 36-239 (323)
27 1yi8_B Tryptophanyl-tRNA synth 98.3 0.00022 9.3E-09 48.6 18.0 201 6-284 24-240 (351)
28 3m5w_A Tryptophanyl-tRNA synth 98.3 0.00011 4.7E-09 50.6 15.8 201 5-286 4-219 (322)
29 2dlc_X Tyrosyl-tRNA synthetase 98.2 2.5E-05 1E-09 55.0 12.2 205 6-287 39-256 (394)
30 2cya_A Tyrosyl-tRNA synthetase 98.2 1E-05 4.2E-10 57.7 9.1 176 6-252 35-219 (364)
31 2el7_A Tryptophanyl-tRNA synth 98.2 0.00049 2.1E-08 46.2 17.7 199 5-284 2-220 (337)
32 1irx_A Lysyl-tRNA synthetase; 98.1 1.8E-06 7.6E-11 62.8 3.9 178 166-346 194-395 (523)
33 3jxe_A Tryptophanyl-tRNA synth 98.1 0.00011 4.8E-09 50.5 12.4 192 7-283 76-278 (392)
34 3foc_A Tryptophanyl-tRNA synth 98.0 2.2E-05 9.2E-10 55.4 7.7 77 8-92 95-179 (451)
35 2j5b_A Tyrosyl-tRNA synthetase 97.9 0.00014 6E-09 49.9 10.4 206 12-288 46-262 (348)
36 3n9i_A Tryptophanyl-tRNA synth 97.8 0.00063 2.7E-08 45.5 12.5 203 7-287 18-238 (346)
37 1gax_A Valrs, valyl-tRNA synth 97.7 0.00026 1.1E-08 48.1 9.8 90 12-110 42-169 (862)
38 3hv0_A Tryptophanyl-tRNA synth 97.6 0.00051 2.1E-08 46.1 10.1 193 14-283 82-291 (393)
39 1wz2_A Leucyl-tRNA synthetase; 97.6 0.00012 5E-09 50.4 6.3 93 10-111 40-180 (967)
40 1wkb_A Leucyl-tRNA synthetase; 97.5 0.00048 2E-08 46.3 8.7 92 11-111 41-180 (810)
41 2cyc_A Tyrosyl-tRNA synthetase 97.5 0.0038 1.6E-07 40.2 13.3 204 7-287 36-280 (375)
42 1n3l_A Tyrosyl-tRNA synthetase 97.5 0.00032 1.4E-08 47.5 7.6 178 12-262 41-230 (372)
43 2ip1_A Tryptophanyl-tRNA synth 97.5 0.0015 6.1E-08 43.0 10.3 201 14-286 110-323 (432)
44 1h3f_A Tyrosyl-tRNA synthetase 97.4 0.0006 2.5E-08 45.6 8.1 84 194-283 171-256 (432)
45 2zp1_A Tyrosyl-tRNA synthetase 97.4 0.0079 3.3E-07 38.0 13.7 84 194-287 147-232 (314)
46 1ffy_A Isoleucyl-tRNA syntheta 97.1 0.0011 4.7E-08 43.8 6.9 89 10-109 54-178 (917)
47 3i05_A Tryptophanyl-tRNA synth 97.1 0.00071 3E-08 45.1 5.5 171 13-261 85-277 (395)
48 1r6t_A Tryptophanyl-tRNA synth 97.0 0.00099 4.2E-08 44.2 5.3 70 211-284 304-375 (477)
49 1i6k_A TRPRS, tryptophanyl-tRN 97.0 0.0095 4E-07 37.5 10.3 202 5-284 2-220 (328)
50 2v0c_A Aminoacyl-tRNA syntheta 97.0 0.0027 1.1E-07 41.2 7.3 89 11-110 40-152 (878)
51 1r6u_A Tryptophanyl-tRNA synth 96.5 0.019 7.9E-07 35.5 8.7 70 211-284 257-328 (437)
52 1y42_X Tyrosyl-tRNA synthetase 95.7 0.027 1.1E-06 34.4 6.4 84 196-282 214-319 (392)
53 2yy5_A Tryptophanyl-tRNA synth 95.4 0.039 1.6E-06 33.4 6.4 163 5-236 5-173 (348)
54 1ile_A Ilers, isoleucyl-tRNA s 94.5 0.022 9.3E-07 35.0 3.1 76 210-286 544-623 (821)
55 1ile_A Ilers, isoleucyl-tRNA s 92.5 0.15 6.3E-06 29.4 4.7 91 9-110 43-174 (821)
56 2pid_A Tyrosyl-tRNA synthetase 87.9 0.16 6.8E-06 29.1 1.6 84 195-281 191-279 (356)
57 1qtq_A GLNRS, protein (glutami 78.8 0.23 9.7E-06 28.1 -0.8 41 234-274 263-317 (553)
58 2jan_A Tyrosyl-tRNA synthetase 71.9 3.9 0.00016 19.8 4.0 85 196-283 169-259 (432)
59 3bfx_A Sulfotransferase 1C2; P 65.4 4.9 0.00021 19.1 3.4 13 296-308 154-166 (296)
60 2yxn_A Tyrosyl-tRNA synthetase 64.8 2.4 0.0001 21.2 1.7 83 197-282 174-261 (322)
61 2zpt_X Tyrosine-ester sulfotra 61.5 7.5 0.00031 17.8 3.8 18 419-436 274-291 (295)
62 2reo_A Putative sulfotransfera 58.2 6.2 0.00026 18.4 2.9 11 296-306 163-173 (305)
63 1ls6_A ARYL sulfotransferase; 56.2 8.6 0.00036 17.4 3.3 14 296-309 153-166 (295)
64 1q1q_A SULT2B1A, sulfotransfer 56.1 5.8 0.00024 18.6 2.5 19 104-122 20-39 (350)
65 2ts1_A Tyrosyl-tRNA synthetase 56.0 4.8 0.0002 19.2 2.0 86 196-283 167-257 (419)
66 1jil_A Tyrrs, tyrosyl-tRNA syn 53.8 10 0.00044 16.9 3.4 85 196-283 168-258 (420)
67 1q20_A SULT2B1B, sulfotransfer 51.5 6.9 0.00029 18.1 2.2 12 295-306 156-167 (299)
68 3ckl_A Sulfotransferase family 50.9 8.7 0.00037 17.4 2.7 17 420-436 278-294 (298)
69 1aqu_A EST, estrogen sulfotran 38.2 18 0.00075 15.3 3.6 18 419-436 276-293 (297)
70 1ug8_A Poly(A)-specific ribonu 35.3 7.2 0.0003 17.9 0.3 54 201-254 3-69 (87)
71 1j99_A Alcohol sulfotransferas 34.9 17 0.00072 15.4 2.1 19 104-122 17-36 (293)
72 1fmj_A Retinol dehydratase; su 32.0 22 0.00094 14.6 2.7 15 296-310 208-222 (351)
73 1jd1_A Hypothetical 13.9 kDa p 29.4 15 0.00065 15.7 1.1 61 2-75 3-74 (129)
74 2fdv_A Cytochrome P450 2A6; CY 28.9 25 0.0011 14.3 2.3 59 4-62 4-69 (476)
75 1mlw_A Tryptophan 5-monooxygen 28.9 7 0.00029 18.0 -0.7 78 196-287 136-213 (301)
76 1j8u_A Phenylalanine-4-hydroxy 28.0 7.4 0.00031 17.8 -0.7 77 196-286 148-224 (325)
77 1ltz_A Phenylalanine-4-hydroxy 27.9 8.3 0.00035 17.5 -0.5 76 199-287 106-181 (297)
78 1avy_A Fibritin, gpwac M; coil 27.5 12 0.00052 16.4 0.3 15 262-276 36-50 (74)
79 1phz_A Protein (phenylalanine 26.9 8 0.00034 17.6 -0.7 21 53-73 43-63 (429)
80 1sbx_A SKI oncogene, C-SKI; wi 25.4 29 0.0012 13.9 3.5 38 107-148 62-99 (106)
81 1toh_A Tyroh, tyrosine hydroxy 25.2 9 0.00038 17.3 -0.7 78 196-287 141-218 (343)
82 3k9o_A Ubiquitin-conjugating e 24.7 30 0.0012 13.8 4.0 27 261-287 164-190 (201)
83 1l8r_A Dachshund; winged-helix 24.6 30 0.0013 13.8 3.7 41 106-150 56-96 (101)
84 3eq5_A SKI-like protein; TGF-b 24.5 26 0.0011 14.2 1.6 34 222-255 83-116 (125)
85 3moe_A Phosphoenolpyruvate car 23.9 31 0.0013 13.7 4.4 55 87-141 25-82 (624)
86 3e46_A Ubiquitin-conjugating e 23.6 31 0.0013 13.6 4.3 89 190-287 149-242 (253)
87 2ou2_A Histone acetyltransfera 23.6 31 0.0013 13.6 3.1 64 261-325 212-277 (280)
88 2npt_A Dual specificity mitoge 23.5 31 0.0013 13.6 3.8 55 151-205 11-89 (106)
89 2faf_A Phosphoenolpyruvate car 22.9 32 0.0013 13.5 4.4 56 88-143 9-67 (608)
90 1ygt_A Cytoplasmic dynein ligh 22.6 32 0.0014 13.5 5.4 62 394-456 10-75 (111)
91 1vzy_A 33 kDa chaperonin; chap 21.6 34 0.0014 13.4 2.8 11 171-181 83-93 (291)
92 2v27_A Phenylalanine hydroxyla 21.4 10 0.00044 16.9 -1.0 76 198-287 89-164 (275)
93 1fy7_A ESA1 histone acetyltran 21.0 34 0.0014 13.3 1.6 21 103-123 34-60 (278)
94 1r9o_A Cytochrome P450 2C9; mo 20.7 35 0.0015 13.3 3.9 60 4-63 5-71 (477)
No 1
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=1154.97 Aligned_cols=481 Identities=35% Similarity=0.581 Sum_probs=457.0
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887705634843388785015999999999999718849999704866638867999999998865898886765588
Q gi|255764513|r 1 MISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGG 80 (492)
Q Consensus 1 ~~~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g 80 (492)
|+++++|||||||||||+|||||||||||||+|||++||+|||||||||++|++++|++.|+++|+||||+|||||..+|
T Consensus 1 m~~~~~vr~RfAPsPtG~lHiG~~rtal~n~~~Ak~~~g~fiLRieDtD~~R~~~~~~~~I~~~l~wlgl~~De~~~~~g 80 (498)
T 2ja2_A 1 MTATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGG 80 (498)
T ss_dssp CCSCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999456851879897312899999999999999829989998788998748889999999999986998776867688
Q ss_pred CCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 76763232628999999999998898245148899977668876643100023665557883330011202577407886
Q gi|255764513|r 81 AYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLT 160 (492)
Q Consensus 81 ~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k 160 (492)
++|||+||+|+++|++++++|+++|+||+||||+|++++.|+.+. .+.++.|++.|++++.++...+.++|.+||||||
T Consensus 81 ~~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~e~l~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~g~~~viR~k 159 (498)
T 2ja2_A 81 PYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAG-RNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLR 159 (498)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTT-CCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCHHHCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 887730975999999999999877997343687788887542104-6887777401013444667877646998069984
Q ss_pred ECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-----H
Q ss_conf 22431143047513402136432356410004532489867887644444443112235430247889999985-----1
Q gi|255764513|r 161 VPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-----N 235 (492)
Q Consensus 161 ~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al-----~ 235 (492)
+|. +.+.|+|.|+|++++++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+|| |
T Consensus 160 ~~~-~~~~~~D~v~g~~~~~~~~~~D~vi~r~dg~PtY~~a~vvDD~~~~ithviRg~d~~~~t~~q~~l~~~l~~~~~~ 238 (498)
T 2ja2_A 160 MPD-DDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVA 238 (498)
T ss_dssp CCS-SCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSC
T ss_pred CCC-CCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCEEECEECCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 599-8851134304207970466898444020585331415451344678755507876577416899999999851668
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 00000101455531101322122343302456662977377998998506766655301101467776520211375544
Q gi|255764513|r 236 FPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGA 315 (492)
Q Consensus 236 ~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A 315 (492)
|++|.|+|+|||++++|+|||||+|+.+|.+||++||+||||+|||++||||++ +++|+||++|||+.||+++|+||||
T Consensus 239 ~~~p~~~h~~l~~~~~g~klskr~~~~~~~~~r~~GylPeAl~NyLa~LGws~~-~~~Ei~sl~eli~~F~l~~i~ks~a 317 (498)
T 2ja2_A 239 ERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIA-DDHDLFGLDEMVAAFDVADVNSSPA 317 (498)
T ss_dssp CCCCEEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSC-SSCCCCCHHHHHHHCCGGGCCCSCE
T ss_pred CCCCEEEECHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC-CCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf 888448753233054566254569851399999869988999999999679888-8750000020345305344777773
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 2015655664355551269989999864442000--------01232206888725320356677556752246788854
Q gi|255764513|r 316 VFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKE--------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAE 387 (492)
Q Consensus 316 ~FD~eKL~wlN~qyIr~~l~~~el~~~l~~~l~~--------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e 387 (492)
+||++||+|+|++||+ .++.+++.+.+.+++.. .+++.++++++++|+.+++|+.+++.|||.++..++++
T Consensus 318 ~FD~~KL~wlN~~yi~-~l~~eel~~~l~~~l~~~~~~~~~d~~~l~~ii~lik~ri~~l~Di~~~~~~f~~~~~~~d~~ 396 (498)
T 2ja2_A 318 RFDQKKADALNAEHIR-MLDVGDFTVRLRDHLDTHGHHIALDEAAFAAAAELVQTRIVVLGDAWELLKFFNDDQYVIDPK 396 (498)
T ss_dssp ECCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHTTSCSSTTHHHHHHGGGSTTTCCCCHH
T ss_pred CCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHH
T ss_conf 0028888999999999-499999999999999973764310378888888886631131077899999860687557979
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHH
Q ss_conf 5543314866799999999998405888998889999999-999957982331012678896488888899999884959
Q gi|255764513|r 388 SFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRN-VAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRS 466 (492)
Q Consensus 388 ~~~k~~~~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~-i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGke 466 (492)
...+ ...++...+|..+.+.+.++++|+.++|++.+++ +++++++|+|++|+|||+||||+++||+|+++|++|||+
T Consensus 397 ~~~k--~l~~~~~~iL~~~~~~L~~~~~w~~e~ie~~ik~~i~e~~~iK~k~l~~pLR~ALTG~~~GP~L~~ii~lLGke 474 (498)
T 2ja2_A 397 AAAK--ELGPDGAAVLDAALAALTSVTDWTAPLIEAALKDALIEGLALKPRKAFSPIRVAATGTTVSPPLFESLELLGRD 474 (498)
T ss_dssp HHHH--HSSHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHSSSSCSCHHHHHHHHCHH
T ss_pred HHHH--HCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHH
T ss_conf 9987--44876999999999998717515899999999999999869988898999999994998493999999993999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998866576
Q gi|255764513|r 467 VVYFRLRHAIALVSSLVQNHK 487 (492)
Q Consensus 467 etl~RL~~aL~~l~~~~~~~~ 487 (492)
+|++||++|+++|++..+.|.
T Consensus 475 e~l~RL~~Al~~lg~~~~~~~ 495 (498)
T 2ja2_A 475 RSMQRLRAARQLVGHALEHHH 495 (498)
T ss_dssp HHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999855653133
No 2
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=0 Score=1138.25 Aligned_cols=460 Identities=43% Similarity=0.767 Sum_probs=439.6
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 05634843388785015999999999999718849999704866638867999999998865898886765588767632
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPYR 86 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~~ 86 (492)
|+|||||||||+|||||||||||||+|||++||+|||||||||++|++++|++.|+++|+||||+|||||..+|+++||+
T Consensus 2 vvtRfaPsPtG~lHiG~~rtal~n~~~ak~~~G~f~LRieDtD~~R~~~~~~~~I~~~l~wlGl~wDegp~~~~~~~~~~ 81 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 56843889897410799999999999999839989998687997747879999999999986997665867788988643
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCE
Q ss_conf 32628999999999998898245148899977668876643100023665557883330011202577407886224311
Q gi|255764513|r 87 QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGS 166 (492)
Q Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~~ 166 (492)
||+|+++|++++++|+++|+||+||||++|++..|+.+ +.|+++|++++.++...+...|.++|||||+|..+.
T Consensus 82 QS~r~~~y~~~~~~L~~~g~aY~c~cs~~~l~~~r~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~iR~k~~~~~~ 155 (468)
T 1j09_A 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGT 155 (468)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHH------SSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHC------CCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 86279999999999997499664268789999887523------788743444688888888857997389986476667
Q ss_pred EECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 43047513402136432356410004532489867887644444443112235430247889999985100000101455
Q gi|255764513|r 167 CVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246 (492)
Q Consensus 167 ~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pl 246 (492)
+.|+|.|+|++.+++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+||
T Consensus 156 ~~~~D~i~g~~~~~~~~~~D~vi~r~dg~p~y~~a~~vdD~~~~ithvirg~d~~~~~~~~~~l~~~l~~~~p~~~h~pl 235 (468)
T 1j09_A 156 TEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235 (468)
T ss_dssp EEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC
T ss_pred CCCCCHHCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEECCC
T ss_conf 64562003326634555899699833787131203203641037654541134200678999999962689983101375
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 53110132212234330245666297737799899850676665530110146777652021137554420156556643
Q gi|255764513|r 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLN 326 (492)
Q Consensus 247 i~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~wlN 326 (492)
|++++|+|||||+|+.+|.+||++||+|+||+|||++||||++ +++|+|+++||++.||+++|+||||+||++||+|+|
T Consensus 236 ~~~~~g~klsKr~~~~~~~~~~~~G~~p~a~~NyLa~LGws~~-d~~Ei~sl~eli~~Fdl~~i~ks~A~FD~~KL~~lN 314 (468)
T 1j09_A 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMP-DGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCT-TCCSCCCHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 2357997046768973311275459987999999999369987-502556677788874230267776546599999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCC-------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHH
Q ss_conf 55551269989999864442000-------01232206888725320356677556752246788854554331486679
Q gi|255764513|r 327 GRWIREKLSTTEFLSRVSQWMKE-------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEI 399 (492)
Q Consensus 327 ~qyIr~~l~~~el~~~l~~~l~~-------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~~~e~~ 399 (492)
++|||+.++.+.+...+.++++. .+++.++++++++|+++++|+.+.+.|||.++..++++...+. +++
T Consensus 315 ~~~ir~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~il~lik~r~~tl~di~~~~~~ff~~~~~~~e~~~~~~----~~~ 390 (468)
T 1j09_A 315 GKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKL----EEG 390 (468)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHGGGCSSTTHHHHHSGGGTCSCCCCCHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH----HHH
T ss_conf 9999961268999999999998657762208999999999998763665506652013478888798999978----989
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 999999999840588899888999999999995798233101267889648888889999988495999999999999
Q gi|255764513|r 400 IDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477 (492)
Q Consensus 400 ~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~aL~ 477 (492)
..+|..+.+.+++.++|+.++|+++++++++++++|+|++|+|||+||||+.+||+|+++|++|||++|++||++||+
T Consensus 391 ~~iL~~~~~~L~~~~~w~~e~I~~~ik~~~~~~~lK~k~l~~pLRvALTG~~~GP~L~~ii~lLGkee~l~RL~~aLA 468 (468)
T 1j09_A 391 LPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERALA 468 (468)
T ss_dssp HHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSCSCCSCHHHHHHHTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 999999999976368799999999999999995979999999999999299839299999999199999999999639
No 3
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=0 Score=1133.87 Aligned_cols=471 Identities=35% Similarity=0.555 Sum_probs=448.6
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 70563484338878501599999999999971884999970486663886799999999886589888676558876763
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPY 85 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~ 85 (492)
.|||||||||||+|||||||||||||+|||++||+|||||||||++|+++||++.|+++|+||||+||| |||
T Consensus 1 ~vrtRfaPsPtG~lHiG~~rtal~n~~~a~~~~G~~iLRieDtD~~R~~~~~~~~I~~~L~wlGl~~d~--------~~~ 72 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE--------GPY 72 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSE--------EEE
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC--------CCE
T ss_conf 922762889898541899999999999999809989999687997747879999999999978999999--------776
Q ss_pred ECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 23262899999999999889824514889997766887664310002366555788333001120257740788622431
Q gi|255764513|r 86 RQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQG 165 (492)
Q Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~ 165 (492)
+||+|+++|+++|++|+++|+||+||||+|||++.|+.+.+.|.+|.|+++||+++.+|...+..+|++||||||+|.++
T Consensus 73 ~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~~~~~~~~e~~~~~~~g~~~~~R~k~~~~~ 152 (492)
T 2cfo_A 73 FQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDR 152 (492)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTC
T ss_pred EHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 17217999999999999869957727999999999987633799998746664100666765665599806999737888
Q ss_pred EEECCCCCCCCEECCCCCC-CCCCEECCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 1430475134021364323-564100045-----3248986788764444444311223543024788999998510000
Q gi|255764513|r 166 SCVFQDKVYGEMEIPWNAV-DMQVLLKSD-----GMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239 (492)
Q Consensus 166 ~~~~~D~i~G~~~~~~~~~-~D~vi~r~d-----g~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p 239 (492)
.+.|+|.|+|++.+++..+ +|+||+|+| |+||||||||||||+|||||||||+||++|||+|++||+||||++|
T Consensus 153 ~~~~~D~v~g~~~~~~~~~~~d~ii~~~~~~~~dg~ptY~~a~~vDD~~~~ithviRg~d~~~~t~~~~~~~~~l~~~~p 232 (492)
T 2cfo_A 153 QIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP 232 (492)
T ss_dssp EEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC
T ss_pred CEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 53565330005764100257973464045767777532775444067556767787352012553499999875257998
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 01014555311013221223433024566629773779989985067666553011014677765202113755442015
Q gi|255764513|r 240 EFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDK 319 (492)
Q Consensus 240 ~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~ 319 (492)
.|+|+|||++++|+|||||+++.+|.+||++||+|+||+|||++||||++.+++||||++||++.|++++|+||||+||+
T Consensus 233 ~~~h~pll~~~~g~klSKr~~~~~v~~~r~~G~~peAl~NyLa~LGws~~~~~~Eifsleeli~~Fdl~~i~ks~A~FD~ 312 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDW 312 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCCSTTBCSSCEECCH
T ss_pred CEEEHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 36537463166787323238975477787679980899999999489998886512558999999998504655443589
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCC----------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 655664355551269989999864442000----------0123220688872532035667755675224678885455
Q gi|255764513|r 320 QKLDWLNGRWIREKLSTTEFLSRVSQWMKE----------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESF 389 (492)
Q Consensus 320 eKL~wlN~qyIr~~l~~~el~~~l~~~l~~----------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~ 389 (492)
+||+|+|++||+ +++.+++.+.+.++++. .+++.++++++|+|+++++|+.+.+.|||.++..++++..
T Consensus 313 ~KL~~iN~~~Ir-~l~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~vi~lik~ri~~l~di~~~~~~ff~~~~~~d~e~~ 391 (492)
T 2cfo_A 313 DKLNWLNRQYIQ-QLEPEEFLAELIPLWQGAGYAFDEERDRPWLFDLAQLLQPGLNTLREAIDQGAVFFIPSVTFDSEAM 391 (492)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHGGGCSSGGGHHHHHHHHHSSSCCCCHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999998-0999999999888888517675322201789999999752255288888765554079888798999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHH-H
Q ss_conf 433148667999999999984058889988899999999999579823310126788964888888999998849599-9
Q gi|255764513|r 390 KSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSV-V 468 (492)
Q Consensus 390 ~k~~~~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkee-t 468 (492)
.+ +..+++..+|..+.+.|.+.+.|+.++|+++++++++++++|+|++|+|||+||||+++||+|+++|++||+++ +
T Consensus 392 ~k--~~~~~~~~iL~~l~~~L~~~~~~~~e~i~~~ik~i~e~~giK~k~l~~pLR~ALTG~~~GP~L~~~l~lLGk~e~~ 469 (492)
T 2cfo_A 392 AQ--LGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWD 469 (492)
T ss_dssp HH--HTSTTHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHSSSSCSCHHHHHHHHHHHTCH
T ss_pred HH--HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHH
T ss_conf 88--4685589999999998636897899999999999999949888888999999991999093999999997753745
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998866576
Q gi|255764513|r 469 YFRLRHAIALVSSLVQNHK 487 (492)
Q Consensus 469 l~RL~~aL~~l~~~~~~~~ 487 (492)
+.||+.||+++.+.+=||.
T Consensus 470 ~~RL~~aL~~~~~~~~~~~ 488 (492)
T 2cfo_A 470 EPRLAAALKQAQTTSLEHH 488 (492)
T ss_dssp HHHHHHHHHHHHHHC-C--
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999998611674102
No 4
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=1142.87 Aligned_cols=455 Identities=36% Similarity=0.676 Sum_probs=423.5
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87705634843388785015999999999999718849999704866638867999999998865898886765588767
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYG 83 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~ 83 (492)
.+.|||||||||||+|||||||||||||+|||++||+|||||||||++|++++|++.|+++|+||||+|||||..+|++|
T Consensus 23 ~~~vr~RfaPsPtG~lHiG~~rtal~n~~~a~~~~g~f~lRieDtD~~R~~~~~~~~i~~~L~wlgl~~De~~~~~g~~~ 102 (488)
T 3afh_A 23 FELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFG 102 (488)
T ss_dssp --CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 88557873879898541899999999999999829989998688998758879999999999976998776867788887
Q ss_pred CEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 63232628999999999998898245148899977668876643100023665557883330011202577407886224
Q gi|255764513|r 84 PYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPN 163 (492)
Q Consensus 84 p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~ 163 (492)
||+||+|+++|+++|++|+++|+||+||||++|+...|..+...... ....|.++++|||+|+
T Consensus 103 py~QS~r~~~y~~~~~~L~~~g~ay~c~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~r~~~~~ 165 (488)
T 3afh_A 103 PYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHE-----------------YKEKGHPVTIKFKVLP 165 (488)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHH-----------------HHHTTCCEEEEECCCS
T ss_pred CEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC-----------------CCCCCCCCEEEECCCC
T ss_conf 74185489999999999986599654557999999885201107854-----------------3346886202201688
Q ss_pred CCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 31143047513402136432356410004532489867887644444443112235430247889999985100000101
Q gi|255764513|r 164 QGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIH 243 (492)
Q Consensus 164 ~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H 243 (492)
+.+.|+|+|+|++++++++++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|+|+|
T Consensus 166 -~~~~~~D~i~G~~~~~~~~l~D~vi~r~dg~pty~~a~vvdD~~~~ithviRg~d~~~~t~~~~~l~~~lg~~~P~~~H 244 (488)
T 3afh_A 166 -GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMH 244 (488)
T ss_dssp -SEEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEE
T ss_pred -CCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf -8864353403466537766788389943898002122486464478867844754546809999999982678982377
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 45553110132212234330245666297737799899850676665530110146777652021137554420156556
Q gi|255764513|r 244 LPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLD 323 (492)
Q Consensus 244 ~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~ 323 (492)
+|||++++|+|||||+|+++|.+||++||+||||+|||++||||+ +++|+|+++||++.||+++|+||||+||++||+
T Consensus 245 ~pli~~~~~~klSKR~g~~si~~yr~~GylPeAl~NyLa~LGws~--~~~Ei~sleELie~FdL~~I~KS~A~FD~~KL~ 322 (488)
T 3afh_A 245 IPLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRV--EGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLE 322 (488)
T ss_dssp ECCEECTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCC--SSCSCCCHHHHGGGCCGGGSCSSCEECCHHHHH
T ss_pred ECCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 223007998754532488601248656999579999999837998--620464499999726832356765420388899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCC---------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 64355551269989999864442000---------012322068887253203566775567522467888545543314
Q gi|255764513|r 324 WLNGRWIREKLSTTEFLSRVSQWMKE---------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTAL 394 (492)
Q Consensus 324 wlN~qyIr~~l~~~el~~~l~~~l~~---------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~ 394 (492)
|+|++||+ +++.+++.+.+.++... ..++.++++++++|+++++|+.+.+.|||.++..++.+...+. +
T Consensus 323 wlN~~yIr-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~keri~~l~Dl~~~~~~ff~~~~~~d~~~~~K~-l 400 (488)
T 3afh_A 323 WVNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKF-L 400 (488)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTSCSSHHHHHHHHHHHHCSCCCCCHHHHHHT-T
T ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH-C
T ss_conf 97899998-489999999999999974321651124567654156552002007889987764158644598999876-2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHH
Q ss_conf 86679999999999840588899888999999999995798233101267889648888889999988495999999999
Q gi|255764513|r 395 CPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRH 474 (492)
Q Consensus 395 ~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~ 474 (492)
.++.+..+|..+.+.++++++|+.++|+++++++++++++|+|++|+|||+||||+++||+|+++|++|||++|++||++
T Consensus 401 ~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~~iK~k~l~~pLRiALTG~~~GP~L~dim~lLGkee~l~RL~~ 480 (488)
T 3afh_A 401 KREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLER 480 (488)
T ss_dssp TSTTHHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHSCSSCSCHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 81779999999999986078489999999999999980996889999999999299909199999999199999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|255764513|r 475 AIALVS 480 (492)
Q Consensus 475 aL~~l~ 480 (492)
||++|+
T Consensus 481 aL~~Lk 486 (488)
T 3afh_A 481 TLQFLK 486 (488)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999871
No 5
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=1118.45 Aligned_cols=458 Identities=36% Similarity=0.646 Sum_probs=432.9
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 05634843388785015999999999999718849999704866638867999999998865898886765588767632
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPYR 86 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~~ 86 (492)
|||||||||||+|||||+|||||||+|||++||+|||||||||++|++++|++.|+++|+||||+|||||..+|+++||+
T Consensus 14 vr~RfAPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRieDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~~~~~~~~ 93 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 88860879897420899999999999999849989998687898758879999999999976998776877788988740
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3262899999999999889824514889997766887664310002366555788--33300112025774078862243
Q gi|255764513|r 87 QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLS--SQEIERLSQEQKKHVVRLTVPNQ 164 (492)
Q Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~--~~e~~~~~~~g~~~~iR~k~p~~ 164 (492)
||+|+++|+++|++|+++|+||+||||+||++..|+.+.+.+.+|.|+++|++.. .++.......+..+++|+++|.
T Consensus 94 QS~r~~~y~~~~~~Li~~G~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~- 172 (481)
T 2o5r_A 94 QSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPR- 172 (481)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCS-
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCEEEECCCC-
T ss_conf 9868999999999998769966123317777566655420356877660344224442332122331666036631676-
Q ss_pred CEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 11430475134021364323564100045324898678876444444431122354302478899999851000001014
Q gi|255764513|r 165 GSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244 (492)
Q Consensus 165 ~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~ 244 (492)
+.+.|+|.|+|++++++..++||||+|+||+||||||||||||+|+|||||||+||++|||+|++||+||||++|.|+|+
T Consensus 173 ~~~~~~D~i~G~i~~~~~~~~D~Vi~R~Dg~PtY~fa~vvDD~~~~ithvirg~d~~~~t~~~~~~~~~l~~~~p~~~h~ 252 (481)
T 2o5r_A 173 KDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHV 252 (481)
T ss_dssp SCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCCEEECCCCCEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 67311102144242266567997899147871022200306755685643156304563599999999847599838950
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 55531101322122343302456662977377998998506766655301101467776520211375544201565566
Q gi|255764513|r 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDW 324 (492)
Q Consensus 245 pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~w 324 (492)
|||++++|+|||||+|+++|.+||++||+|+||+|||++||||++ +++|+|+++||++.||+++|+||||+||++||+|
T Consensus 253 ~~i~~~dg~KLSKR~g~~si~~~r~~G~~p~Al~NyL~~LGws~~-~~~Ei~sl~eli~~Fdl~~iskS~A~FD~~KL~w 331 (481)
T 2o5r_A 253 STILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHP-EGKELLTLEELISSFSLDRLSPNPAIFDPQKLKW 331 (481)
T ss_dssp CCEECTTSSBCCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCCT-TCCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 544089989756647975899999879988999999999479999-7636779999998717145788864366999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC-------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH
Q ss_conf 4355551269989999864442000-------012322068887253203566775567522467888545543314866
Q gi|255764513|r 325 LNGRWIREKLSTTEFLSRVSQWMKE-------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPE 397 (492)
Q Consensus 325 lN~qyIr~~l~~~el~~~l~~~l~~-------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~~~e 397 (492)
+|++||++ ++.+++.+.+.+++.. .+++.++++++|+|+++++|+.+++.|||.+|..++. ++
T Consensus 332 iN~~~l~~-l~~eel~~~l~~~~~~~~~~~~d~~~~~~~l~l~k~ri~~l~di~~~~~~ff~~p~~~~~---------~e 401 (481)
T 2o5r_A 332 MNGYYLRN-MPIEKLAELAKPFFEKAGIKIIDEEYFKKVLEITKERVEVLSEFPEESRFFFEDPAPVEI---------PE 401 (481)
T ss_dssp HHHHHHHH-SCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHTTTCSSGGGHHHHSGGGTSCCCCCCC---------CG
T ss_pred HHHHHHHH-CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC---------CH
T ss_conf 99999874-585889999999998737665448899877777641667499999999997079742467---------78
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 79999999999840588899888999999999995798233101267889648888889999988495999999999999
Q gi|255764513|r 398 EIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477 (492)
Q Consensus 398 ~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~aL~ 477 (492)
..+.+|..+.+.++++ +|+.++|+++++++++++|+|+|++|+|||+||||+.+||+|+++|.+|||++|++||++||.
T Consensus 402 ~~k~~l~~~~~~L~~~-~w~~e~i~~~lk~~~e~~glK~k~l~~pLR~ALTG~~~GP~L~~ii~lLGke~vl~RL~~aLg 480 (481)
T 2o5r_A 402 EMKEVFSQLKEELQNV-RWTMEEITPVFKKVLKQHGVKPKEFYMTLRRVLTGREEGPELVNIIPLLGKEIFLRRIERSLG 480 (481)
T ss_dssp GGHHHHHHHHHHTTTS-CSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSSSCCSCHHHHHHHSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHC
T ss_conf 9999999999987519-999999999999999996979889999999999599909199999999299999999998728
No 6
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=1126.86 Aligned_cols=454 Identities=37% Similarity=0.685 Sum_probs=421.7
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 77056348433887850159999999999997188499997048666388679999999988658988867655887676
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGP 84 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p 84 (492)
..|||||||||||+|||||+|||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||..+|++||
T Consensus 128 ~~vrtRFaPsPTG~lHiG~~rtAl~n~l~Ak~~~G~filRieDTD~~R~~~~~~~~I~~~L~wlGl~~Degp~~~g~~~p 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 86478318898974207999999999999997599899986779987587799999999999869986768777889878
Q ss_pred EECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 32326289999999999988982451488999776688766431000236655578833300112025774078862243
Q gi|255764513|r 85 YRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQ 164 (492)
Q Consensus 85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~ 164 (492)
|+||+|+++|+++|++|+++|+||+||||++|+...| +....|+. .....|.++++|||+|+
T Consensus 208 y~QS~r~~~y~~~a~~L~~~g~AY~C~ct~~e~~~~~------~~~~~~~~-----------~~~~~~~~~~~r~k~~~- 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKEL------FTTYEYPH-----------EYKEKGHPVTIKFKVLP- 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEEC------CCCSSCCH-----------HHHHTTCCEEEEECCCS-
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH------HHCCCCCH-----------HHHCCCCCCCCCCCCCC-
T ss_conf 4264079999999999997699753017889999876------32002762-----------23204886200113789-
Q ss_pred CEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 11430475134021364323564100045324898678876444444431122354302478899999851000001014
Q gi|255764513|r 165 GSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244 (492)
Q Consensus 165 ~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~ 244 (492)
+.+.|+|.|+|++++++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|+|||+
T Consensus 270 ~~~~~~D~i~G~i~~~~~~l~D~Vi~R~Dg~ptY~~a~vvdD~~~~ithviRg~d~~~~t~~~~~l~~alg~~~P~faHl 349 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 349 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred CCEEEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 83578764411155364447981899528981100112450665788744065202147099999999827799711661
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 55531101322122343302456662977377998998506766655301101467776520211375544201565566
Q gi|255764513|r 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDW 324 (492)
Q Consensus 245 pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~w 324 (492)
|||++++|+|||||+|+++|.+||++||+||||+|||++||||++ ++|+|+++||++.||+++|+||||+||++||+|
T Consensus 350 PLIl~~dg~KLSKR~ga~sV~~yre~GylPeAllNYLalLGWS~~--~~EifsLdELIe~FdL~~IsKS~A~FD~~KL~w 427 (592)
T 3al0_C 350 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVE--GDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEW 427 (592)
T ss_dssp CCCBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCC--SCSCCCTTTTGGGCCTTSBCSSCCBCCHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHH
T ss_conf 102368987555567975278998779994899999998368986--311331999998369120267752041999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC---------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 4355551269989999864442000---------0123220688872532035667755675224678885455433148
Q gi|255764513|r 325 LNGRWIREKLSTTEFLSRVSQWMKE---------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALC 395 (492)
Q Consensus 325 lN~qyIr~~l~~~el~~~l~~~l~~---------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~~ 395 (492)
+|++||+ .++.+++...+.+++.. ..++..+++++++|+++++|+.+.+.+||.++..++.+...+. +.
T Consensus 428 iN~qyLr-~ls~eel~~~l~~~~~~~~~~i~~~d~~~l~~li~likeri~tL~Di~~~~~~ff~~~~~~d~~~~~K~-l~ 505 (592)
T 3al0_C 428 VNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKF-LK 505 (592)
T ss_dssp HHHHHHT-TSCHHHHHHHHHHHHHHHTCCCCCCCTTTHHHHHHHHHTTCSSSSHHHHTTGGGTCSCCCCCTTHHHHH-TS
T ss_pred HHHHHHH-HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHH-CC
T ss_conf 9999998-599999999999999984203533667788877688763305099999998874279732388999875-27
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 66799999999998405888998889999999999957982331012678896488888899999884959999999999
Q gi|255764513|r 396 PEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHA 475 (492)
Q Consensus 396 ~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~a 475 (492)
.+.+..+|..+.+.++++++|+.++|++++++++++.++|+|++|+|||+||||+.+||+|+++|++||+++|++||++|
T Consensus 506 ~e~a~~iL~~~~~~L~~le~w~~e~Ie~~ik~i~e~~~iK~k~l~~pLRvALTG~~~GP~L~dim~lLGkeevL~RL~~a 585 (592)
T 3al0_C 506 REEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERT 585 (592)
T ss_dssp SSSHHHHHHHHHHHHHSCSCCSSHHHHHHHHHHTTTTSSCHHHHHHHHHHHHTSSSCCSCHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 17699999999999860785899999999999999809878899999999990999091999999990999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|255764513|r 476 IALVS 480 (492)
Q Consensus 476 L~~l~ 480 (492)
|++|+
T Consensus 586 Le~Lk 590 (592)
T 3al0_C 586 LQFLK 590 (592)
T ss_dssp HTTTC
T ss_pred HHHHC
T ss_conf 99872
No 7
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=0 Score=766.29 Aligned_cols=315 Identities=23% Similarity=0.263 Sum_probs=286.6
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87705634843388785015999999999999718849999704866638867999999998865898886765588767
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYG 83 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~ 83 (492)
.++|||||||||||+|||||||||||||+|||++||+|||||||||++|++++|++.|+++|+||||+||| +
T Consensus 24 ~~~v~tRFAPsPtG~LHiG~artAl~n~~~Ak~~~G~fiLRiEDTD~~R~~~e~~~~I~edL~WLGl~wDe--------~ 95 (553)
T 1qtq_A 24 HTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSG--------N 95 (553)
T ss_dssp CSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSS--------S
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC--------C
T ss_conf 88189965979897530899999999999999819989999788997647879999999999977998998--------8
Q ss_pred CEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEE
Q ss_conf 63232628999999999998898245148899977668876643100023665557883330011202---577407886
Q gi|255764513|r 84 PYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQE---QKKHVVRLT 160 (492)
Q Consensus 84 p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~---g~~~~iR~k 160 (492)
||+||+|+++|++++++|+++|+||+||||+|||++.|+.+.+.|.++.|++.|+..+.++.+..... ....++|++
T Consensus 96 ~~~QSer~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (553)
T 1qtq_A 96 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAK 175 (553)
T ss_dssp CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEEC
T ss_pred CEEHHHCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
T ss_conf 50221159999999999998699575578999999988778727999997764313677777887635777532675124
Q ss_pred ECC-CCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 224-3114304751340213643235641000453248986788764444444311223543024788999998510000
Q gi|255764513|r 161 VPN-QGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239 (492)
Q Consensus 161 ~p~-~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p 239 (492)
++. .....+.|.+.+.+. ...+|+|+.|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|
T Consensus 176 ~d~~~~~~~~~d~~~~~~~---~~~~d~v~~k~dg~PtY~fA~vVDD~l~gITHViRG~D~l~st~~q~~l~~aLg~~~p 252 (553)
T 1qtq_A 176 IDMASPFIVMRDPVLYRIK---FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVH 252 (553)
T ss_dssp SCTTCSSGGGSSCEEEEEC---CCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCC
T ss_pred CCCCCCCEEEECCEEEEEC---CCCCCCEEECCCCCCCCCHHCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf 4665464178888898850---4456525433545400000021557764797898510033466799999972478888
Q ss_pred HHHHHHHHHHHHCCCCCCCC----------------CCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHH
Q ss_conf 01014555311013221223----------------43302456662977377998998506766655301101467776
Q gi|255764513|r 240 EFIHLPLIKNPDKSKLSKRR----------------NPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIH 303 (492)
Q Consensus 240 ~f~H~pli~~~~g~klSKR~----------------~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~ 303 (492)
.|+|+|++++.+|++||||| +..+|.+||++||+||||+|||++||||++.++.|+++++++++
T Consensus 253 ~~~h~~l~l~~~~~~lskrhl~~~v~~~~~~~~d~~~~~ti~~~r~~G~~peAi~nfl~~lG~s~~~~~~e~~~l~~~~~ 332 (553)
T 1qtq_A 253 PRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIR 332 (553)
T ss_dssp CEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 53776657535554320022420135777776668875028899886998699999999838788877304675999998
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52021137554420156556643555
Q gi|255764513|r 304 HFDLHHLSKAGAVFDKQKLDWLNGRW 329 (492)
Q Consensus 304 ~FdL~~I~Ks~A~FD~eKL~wlN~qy 329 (492)
.|++++++|++|+||++||.|+|.+.
T Consensus 333 ~f~~~~~~r~~avfd~~kl~~~N~~~ 358 (553)
T 1qtq_A 333 EDLNENAPRAMAVIDPVKLVIENYQG 358 (553)
T ss_dssp HHHHHHSCEECEESSEEEEEBTTCCS
T ss_pred HHHHHCCCCHHEECCCCCCEEECCCC
T ss_conf 63341077100102654435772689
No 8
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=0 Score=725.94 Aligned_cols=318 Identities=21% Similarity=0.311 Sum_probs=287.5
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87705634843388785015999999999999718849999704866638867999999998865898886765588767
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYG 83 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~ 83 (492)
..+|||||||||||||||||+|||||||+|||++||+|+|||||||++|++++|++.|+++|+||||+||| +
T Consensus 64 ~~kVvTRFaPsPtG~LHIGhartal~N~~~Ak~~~G~f~LRiDDTDp~R~~~e~~~~I~edL~WLGl~wDe--------~ 135 (851)
T 2hz7_A 64 YPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGE--------H 135 (851)
T ss_dssp CSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTT--------C
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC--------C
T ss_conf 98089950889886213899999999999999859999999787986648889999999999983998999--------9
Q ss_pred CEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HHCCCCCEEEEE
Q ss_conf 63232628999999999998898245148899977668876643100023665557883330011---202577407886
Q gi|255764513|r 84 PYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERL---SQEQKKHVVRLT 160 (492)
Q Consensus 84 p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~---~~~g~~~~iR~k 160 (492)
||+||+|+++|.++|++|+++|+||+||||+||+++.|+.+.+.|.++.|+++|++.+.+...+. ...+.++|+|+|
T Consensus 136 ~~~QSdr~~~y~e~a~~LI~~G~AY~C~cs~eei~~~R~~~~~~G~~~~yr~r~~eenl~l~~~m~~g~~~~g~~vlR~K 215 (851)
T 2hz7_A 136 FYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAK 215 (851)
T ss_dssp EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEEC
T ss_pred CEEHHCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 57152689999999999998699897899999999999899847989798998924553078997546545798689996
Q ss_pred ECC-CCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 224-3114304751340213643235641000453248986788764444444311223543024788999998510000
Q gi|255764513|r 161 VPN-QGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239 (492)
Q Consensus 161 ~p~-~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p 239 (492)
++. ...+.+.|.|.+++.... .+.+.-|.||+||||||||||||+|||||||||+||++|||+|++||++|||++|
T Consensus 216 id~~~~n~~~rD~v~~ri~~~~---h~~~gdk~~i~PtYdfA~vVDD~l~gITHVIRg~E~~~~tp~q~~L~~aLg~~~p 292 (851)
T 2hz7_A 216 IDLTAPNMKLRDPVLYRIVNKP---HFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPR 292 (851)
T ss_dssp CCTTCSSGGGSSCEEEEECCCC---BTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSC
T ss_pred CCCCCCCCEEECCEEEEEECCC---CCCCCCCCCCEECCCCCEEECHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 5666786225514045674145---2024765453052113514136555997798414122248888767632468999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC----------------CCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHH
Q ss_conf 010145553110132212234----------------3302456662977377998998506766655301101467776
Q gi|255764513|r 240 EFIHLPLIKNPDKSKLSKRRN----------------PTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIH 303 (492)
Q Consensus 240 ~f~H~pli~~~~g~klSKR~~----------------~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~ 303 (492)
.|+|+|++++.++.+||||+. ..+|..||+.||+|+||.||+++||||++....++..++.+++
T Consensus 293 p~~h~f~rLn~~~t~lSKRkl~~lv~~~~v~gWDDpR~~Tl~glRrrGy~PeAi~nfl~~lG~S~~d~~~~~~~le~~~r 372 (851)
T 2hz7_A 293 PHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp CEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 73675204314666557765312355675467667641009999986998999999999968888875420553999998
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 52021137554420156556643555512
Q gi|255764513|r 304 HFDLHHLSKAGAVFDKQKLDWLNGRWIRE 332 (492)
Q Consensus 304 ~FdL~~I~Ks~A~FD~eKL~wlN~qyIr~ 332 (492)
.|..+++++++|+||+.||.|+|.+|++.
T Consensus 373 ~~l~~~~~R~~aV~Dp~Kl~i~N~~~~~~ 401 (851)
T 2hz7_A 373 DDLNHRAPRVMAVLDPVKVTLTNLDGEKT 401 (851)
T ss_dssp HHHHTTCCEECEESSEEEEEETTCCSCEE
T ss_pred HHHHHCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf 64041076432104885889977887535
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
Probab=100.00 E-value=0 Score=695.35 Aligned_cols=289 Identities=30% Similarity=0.555 Sum_probs=264.7
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88877056348433887850159999999999997188499997048666388679999999988658988867655887
Q gi|255764513|r 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGA 81 (492)
Q Consensus 2 ~~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~ 81 (492)
|+.+++||||||||||+||||||||||+||++||++||+|+|||||||++|++++|++.|+++|+|||++||+
T Consensus 1 ~~~~~~~tRfAPsPtG~lHlG~artal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wLgl~~d~------- 73 (298)
T 1nzj_A 1 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG------- 73 (298)
T ss_dssp ---CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSS-------
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC-------
T ss_conf 9899836867959898520899999999999999809989998687997758768999999998744666776-------
Q ss_pred CCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 67632326289999999999988982451488999776688766431000236655578833300112025774078862
Q gi|255764513|r 82 YGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTV 161 (492)
Q Consensus 82 ~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~ 161 (492)
+||+||+|+++|++++++|+++|+||+||||+++|+..|. .|++.|+..... ....++|++.
T Consensus 74 -~~~~QS~r~~~y~~~~~~L~~~G~aY~C~csr~~l~~~~~---------~~~~~~~~~~~~--------~~~~~~r~~~ 135 (298)
T 1nzj_A 74 -DVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG---------IYDGHCRVLHHG--------PDNAAVRIRQ 135 (298)
T ss_dssp -CCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTS---------SCCCTTTTTCCC--------STTCEEEECC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCC---------CCCCCCCCCCCC--------CCCHHHEEEC
T ss_conf -4332676899999999999977982250255888876302---------333333223345--------5322210205
Q ss_pred CCCCEEECCCCCCCCEECCCC-CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 243114304751340213643-2356410004532489867887644444443112235430247889999985100000
Q gi|255764513|r 162 PNQGSCVFQDKVYGEMEIPWN-AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240 (492)
Q Consensus 162 p~~~~~~~~D~i~G~~~~~~~-~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~ 240 (492)
+.. ...|.|.++|.+.+... ..+||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|+
T Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~r~Dg~ptY~lA~vVDD~~~gIThViRG~Dl~~st~~Q~~L~~aLg~~~P~ 214 (298)
T 1nzj_A 136 QHP-VTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214 (298)
T ss_dssp SSC-CCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred CCC-CEEEEECCCCCEEECCCCCCCCEEEECCCCCCCEEECHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 786-2167442216366313334464124657786311222011543269978964886665768899999973899985
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHH----HHHHHHHHCCCCCC-
Q ss_conf 1014555311013221223433024566629773779989985067666553011014677----76520211375544-
Q gi|255764513|r 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL----IHHFDLHHLSKAGA- 315 (492)
Q Consensus 241 f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~el----i~~FdL~~I~Ks~A- 315 (492)
|+|+|||++++|+|||||+++.+| ++|+.+.+++|||.+|||+++ .+.+.|+++|+ |+.|++++|+||++
T Consensus 215 y~H~pli~~~~G~KLSKr~~a~~i----~~~~~~~~~~~~L~~lG~~~~-~~~~~~s~~e~l~~~i~~f~l~~i~ks~~i 289 (298)
T 1nzj_A 215 YIHLPLALNPQGAKLSKQNHAPAL----PKGDPRPVLIAALQFLGQQAE-AHWQDFSVEQILQSAVKNWRLTAVPESAIV 289 (298)
T ss_dssp EEEECBCCC-------------CC----CSSCCHHHHHHHHHHTTCCCC-SCGGGSCHHHHHHHHHHTCCGGGSCCCSBC
T ss_pred EEEEEEEECCCCCCCCCCCCHHHH----HCCCCCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf 498672577899856776871133----358931999999998089986-223448999999999857697678854014
Q ss_pred --CCHHHH
Q ss_conf --201565
Q gi|255764513|r 316 --VFDKQK 321 (492)
Q Consensus 316 --~FD~eK 321 (492)
.||..|
T Consensus 290 ~~~f~~~~ 297 (298)
T 1nzj_A 290 NSTFSNAS 297 (298)
T ss_dssp --------
T ss_pred CCCCCCCC
T ss_conf 57888787
No 10
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=0 Score=676.27 Aligned_cols=284 Identities=29% Similarity=0.465 Sum_probs=241.6
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88770563484338878501599999999999971884999970486663886799999999886589888676558876
Q gi|255764513|r 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAY 82 (492)
Q Consensus 3 ~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~ 82 (492)
+..+|||||||||||+||||||||||+||+|||++||+|||||||||++|++++|++.|+++|+||||+|||
T Consensus 93 ~~g~VvtRFAPsPtG~LHiG~artal~n~~~Ak~~~G~fiLRieDTD~~R~~~e~~~~I~edL~WLGl~wDe-------- 164 (553)
T 3aii_A 93 VKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE-------- 164 (553)
T ss_dssp CCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSE--------
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC--------
T ss_conf 898189997959998644899999999999999719989998057766617789999999999980899898--------
Q ss_pred CCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-----HHHHCCCCCEE
Q ss_conf 7632326289999999999988982451488999776688766431000236655578833300-----11202577407
Q gi|255764513|r 83 GPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIE-----RLSQEQKKHVV 157 (492)
Q Consensus 83 ~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~-----~~~~~g~~~~i 157 (492)
||+||+|+++|++++++|+++|+||+||||+||+.+.|... +...||+.+.++.. ........+|+
T Consensus 165 -~~~QS~r~~~Y~~~a~~Li~~G~AY~C~Cs~eel~~~r~~~--------~~~~~r~~~~~~~l~~~~~~~~~~~g~~vl 235 (553)
T 3aii_A 165 -TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRG--------EACHCRSLGFRENLQRWREMFEMKEGSAVV 235 (553)
T ss_dssp -EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTT--------CCCGGGGCCHHHHHHHHHHGGGSCTTSCEE
T ss_pred -CCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCC--------CCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf -73231009999999999998799544069999999987445--------656777764000157888865344787499
Q ss_pred EEEECCC-CEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8862243-114304751340213643235641000453248986788764444444311223543024788999998510
Q gi|255764513|r 158 RLTVPNQ-GSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236 (492)
Q Consensus 158 R~k~p~~-~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~ 236 (492)
|+|++.. ....+.|.|.+++. ...+|+++.|+||+||||||||||||+|||||||||+||++|||+|++||+||||
T Consensus 236 R~k~~~~~~~~~~rd~v~~ri~---~~~~d~v~~r~d~~PtY~fA~vVDD~~~gITHVIRG~D~l~sT~~Q~~L~~aLg~ 312 (553)
T 3aii_A 236 RVKTDLNHPNPAIRDWVSMRIV---EAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGW 312 (553)
T ss_dssp EECCCTTCSSGGGTTCEEEEEC---CSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTC
T ss_pred EEECCCCCCCCCEECCEEEEEE---CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCHHHCCCHHHHHHHHHCCC
T ss_conf 9956655787614324344540---1247640333046435655126435554246698553210275899999997599
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCC----------------CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHH
Q ss_conf 00001014555311013221223433----------------02456662977377998998506766655301101467
Q gi|255764513|r 237 PIPEFIHLPLIKNPDKSKLSKRRNPT----------------SISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ 300 (492)
Q Consensus 237 ~~p~f~H~pli~~~~g~klSKR~~~~----------------~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~e 300 (492)
++|.|+|+|+|. .++.+||||.... ++.+||+.||+||||+||++++|||.
T Consensus 313 ~~P~~~H~~~L~-~~~~~lSkr~~~~~v~~g~~~gwddprl~tl~~lrrrG~~peAi~nf~~~lG~s~------------ 379 (553)
T 3aii_A 313 EPPEFIHYGRLK-MDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKI------------ 379 (553)
T ss_dssp CCCEEECCCCBC--------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCS------------
T ss_pred CCCCEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCC------------
T ss_conf 987511221333-7775445233211351577555556442204678777999999999999729677------------
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7765202113755442015655664355551
Q gi|255764513|r 301 LIHHFDLHHLSKAGAVFDKQKLDWLNGRWIR 331 (492)
Q Consensus 301 li~~FdL~~I~Ks~A~FD~eKL~wlN~qyIr 331 (492)
+++.||++||.|+|+++|.
T Consensus 380 ------------~d~~~~~~~L~~~nr~~l~ 398 (553)
T 3aii_A 380 ------------ADSTMSWKKIYGLNRSILE 398 (553)
T ss_dssp ------------SCBCCCHHHHHHHHHHHHT
T ss_pred ------------CCCCCCHHHHHHHHHHHHC
T ss_conf ------------6311358789998899863
No 11
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=0 Score=614.38 Aligned_cols=464 Identities=14% Similarity=0.041 Sum_probs=370.6
Q ss_pred CCCEEEECCCCCCCCCCHHHHH-----HHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8770563484338878501599-----99999999997188499997048666388679999999988658988867655
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAY-----TALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~r-----tal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
..++++||+|||||+|||||+| |||+|||+|++++|+|+|||||||+.|++++++..++. +|+|+.|||+|+.
T Consensus 19 ~~~~v~~~g~SPTG~lHIG~~R~av~~daL~n~L~a~g~~~~filrieDtD~~R~~~~~~~~~~~--~~lg~~~~e~p~~ 96 (523)
T 1irx_A 19 KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWK--DYLGMPISEVPDP 96 (523)
T ss_dssp CSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGG--GGTTSBGGGSCCT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHCCCHHHHHHHH--HHCCCCHHHCCCC
T ss_conf 87399943788998630247826289999999999769686999999898512013000999999--9769976655898
Q ss_pred CCCCCCEECCC--CHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 88767632326--2899999999999889824514889997766887664310002366555788333001120257740
Q gi|255764513|r 79 GGAYGPYRQSE--RKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHV 156 (492)
Q Consensus 79 ~g~~~p~~QS~--r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~ 156 (492)
+|.++||.|++ ++..|.+++..+.+.+.+|.|||+.++++..|+.+...+.++.|++.|++.+..+..........++
T Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (523)
T 1irx_A 97 WGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVY 176 (523)
T ss_dssp TSSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCCH
T ss_conf 87754499999988899999838754444627887515899999999997402231144201023123233454455521
Q ss_pred EEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH----HHH
Q ss_conf 7886224311430475134021364323564100045324898678876444444431122354302478899----999
Q gi|255764513|r 157 VRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHIL----LYQ 232 (492)
Q Consensus 157 iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~----l~~ 232 (492)
.+...+....+.+.|...+.........+|+++.|+||.|||+++++++++.|+|+|++||.||+.+++.|+. +++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~g~dh~~~~~~~~~~~~~~~~ 256 (523)
T 1irx_A 177 CPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKE 256 (523)
T ss_dssp CTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCHHHCCCCCEEECCCEEECCCCHHHHHHHHHHHH
T ss_conf 11457554147762785379986688732046406987355532620211278736875712103784067888999986
Q ss_pred HHHHCCCHHHHHHHH-HHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHH------HHHHH
Q ss_conf 851000001014555-31101322122343302456662977377998998506766655301101467------77652
Q gi|255764513|r 233 YFNFPIPEFIHLPLI-KNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ------LIHHF 305 (492)
Q Consensus 233 al~~~~p~f~H~pli-~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~e------li~~F 305 (492)
++||.+|.|+|+|+| ++.+|+|||||+|......++..+|.|+|+.+|+++.+|+...+ +....+ -...|
T Consensus 257 ~~~~~~p~~~h~~~l~~~~~~~KmSKr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~ 333 (523)
T 1irx_A 257 VYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIK---IDLGLGILNLYDEFEKV 333 (523)
T ss_dssp HHCCCCCBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEE---ECCSTTHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHH
T ss_conf 068888657898357617755456666666214999987079999899873788765655---02101467777778877
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHH------------HCCCCCCCCHHHHHHHCCC
Q ss_conf 0211375544201565566435555126998--------9999864442------------0000123220688872532
Q gi|255764513|r 306 DLHHLSKAGAVFDKQKLDWLNGRWIREKLST--------TEFLSRVSQW------------MKEKDRLTQALTLAQSRIT 365 (492)
Q Consensus 306 dL~~I~Ks~A~FD~eKL~wlN~qyIr~~l~~--------~el~~~l~~~------------l~~~~~l~~il~likeRi~ 365 (492)
+-...+.+++.|+..++.|++..++.. ++. ..+.. +... .........+.....+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 411 (523)
T 1irx_A 334 ERIYFGVEGGKGDDEELRRTYELSMPK-KPERLVAQAPFRFLAV-LVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVK 411 (523)
T ss_dssp HHHHTTSCC-----CHHHHHHHHHCSS-CCCCCCCCCCHHHHHH-HTTCTTCCHHHHHHHHHHTTSSCSSCCHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHCCCHHHHHH-HHHHHCCCCHHHHHHHHHHHCCHHHCCHHHHHHHH
T ss_conf 402346105555457888887663135-7345542044899987-77652478589999886630033223666689999
Q ss_pred HHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEE
Q ss_conf 035667-7556752246788854554331486679999999999840588899888999999999995798233101267
Q gi|255764513|r 366 TLSALP-QMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLF 444 (492)
Q Consensus 366 tL~Di~-~~~~ffF~~~~~~d~e~~~k~~~~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLR 444 (492)
.+.++. ++..+||.+...+............+..+++|..+.+.++..++|+.++|++.++++++++|+|+|++|+|||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~l~~~l~~~~~~~~e~i~~~i~~iake~g~k~k~lf~~lR 491 (523)
T 1irx_A 412 LRINLARNWVKKYAPEDVKFSILEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLY 491 (523)
T ss_dssp HHHHHHHHHHHHTSCGGGCCCCCSSCCCCCCCHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999844565534552024554489899999999999985378999999999999999995979879999999
Q ss_pred EEEECCCCCCCHHHHHHHHCHHHHHHHHHH
Q ss_conf 889648888889999988495999999999
Q gi|255764513|r 445 LAITGSKYSLPLFDSIEILGRSVVYFRLRH 474 (492)
Q Consensus 445 iALTG~~~GP~L~eil~lLGkeetl~RL~~ 474 (492)
+||||+++||+|+++|.+|||++|++||+.
T Consensus 492 ~aLtG~~~GP~L~~~l~~LGke~vl~RL~~ 521 (523)
T 1irx_A 492 RLFIGKERGPRLASFLASLDRSFVIKRLRL 521 (523)
T ss_dssp HHHHSSSSCSCHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCCCCCHHHHHHHHCHHHHHHHHCC
T ss_conf 999198889898999999599999998745
No 12
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.22 E-value=1.6e-10 Score=90.21 Aligned_cols=236 Identities=15% Similarity=0.119 Sum_probs=134.5
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCCC-------------CCCHHHHHHHHHHHHHCCC
Q ss_conf 484338--8785015999999999999-----7188499997048666-------------3886799999999886589
Q gi|255764513|r 11 IAPSPT--GEPHIGTAYTALFNYLIAK-----RTGGKFILRIEDTDSK-------------RSTLESENAVMQSLKWCGL 70 (492)
Q Consensus 11 faPsPt--G~lH~G~~rtal~n~l~a~-----~~~g~f~lRieDtd~~-------------R~~~~~~~~i~~~l~wlgl 70 (492)
+.--|| +++||||+||+++--+++| -+.-.|+.=|.|.|.+ -....+.+.+.++++-|++
T Consensus 43 Y~CGpTvy~~~HIGhaRt~v~~D~l~R~L~~~G~~V~~v~nitDiddKIi~~A~~~g~~~~e~a~~~~~~f~~~~~~L~i 122 (414)
T 3c8z_A 43 YVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRV 122 (414)
T ss_dssp EECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 85899778886400032699999999999985996699865685338999998754999999999999999999987468
Q ss_pred CCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 88867655887676323262899999999999889824514889997766887664310002366555788333001120
Q gi|255764513|r 71 NWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQ 150 (492)
Q Consensus 71 ~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~ 150 (492)
.++... -+.++..+.-.+++++|+++|.||.|--+. .....-.....+.|..-+ ....++......
T Consensus 123 ~~~~~~--------~rate~i~~ii~~i~~l~~kg~aY~~~~~~-----~~~vyf~~~~~~~yg~l~-~~~~~~~~~~~~ 188 (414)
T 3c8z_A 123 LPPHDY--------VAATDAIAEVVEMVEKLLASGAAYIVEDAE-----YPDVYFRADATAQFGYES-GYDRDTMLTLFA 188 (414)
T ss_dssp CCCSEE--------EEGGGCHHHHHHHHHHHHHHTSEEECSCSS-----CCCEEECTTSSTTTTTTT-CCCHHHHHHHHH
T ss_pred CCCCEE--------ECCCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CCCEEEEECCHHHCCCCC-CCCHHHHHHHHH
T ss_conf 999566--------314002999999999986423200126875-----542799830333147421-111566655543
Q ss_pred ------------CCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHH-HH--HHHHH
Q ss_conf ------------2577407886224311430475134021364323564100045324898678876444-44--44311
Q gi|255764513|r 151 ------------EQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHL-MK--ITHVA 215 (492)
Q Consensus 151 ------------~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~-m~--ithvi 215 (492)
+...+++- |.... |++.+++ -...|.|.+|..|++=-+. .| +.--.
T Consensus 189 ~~~~~~~~~~K~~~~DF~Lw-k~~~~----------~~~~w~S--------pwG~GrPgWHiECsam~~~~lg~~~DIH~ 249 (414)
T 3c8z_A 189 ERGGDPDRPGKSDQLDALLW-RAERP----------GEPSWPS--------PFGRGRPGWHVECSAIALTRIGTGLDIQG 249 (414)
T ss_dssp HTTCCTTCTTCSSTTCEEEE-EECCT----------TSCCBCC--------TTCSEEECHHHHHHHHHHHHTCSCEEEEE
T ss_pred HHCCCCCHHCCCCHHHHHHH-CCCCC----------CCCCCCC--------CCCCCCCCCCCCCCHHHHHCCCCCEEEEC
T ss_conf 20243200002587776411-02665----------7876348--------87762884674424888740698335740
Q ss_pred CCCCCCC----HHHHHHHHHHHH-H-HCCC-HHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2235430----247889999985-1-0000-0101455531101322122343-3024566629773779989985
Q gi|255764513|r 216 RGEEWIS----SVPKHILLYQYF-N-FPIP-EFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLAL 283 (492)
Q Consensus 216 Rg~d~~~----~t~~q~~l~~al-~-~~~p-~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLal 283 (492)
-|.||+- |-..|. +++ | .+.+ .|.|... ++.+|+|+||+.|. +.+.++.+.||-|+++.=+|..
T Consensus 250 GG~Dl~fPHHeneiAq~---~a~~g~~~~~~~w~h~g~-l~~~g~KMSKSlGN~~~~~d~l~~~~~~~~~R~~ll~ 321 (414)
T 3c8z_A 250 GGSDLIFPHHEYSAAHA---ESVTGERRFARHYVHTGM-IGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp EEGGGTTTHHHHHHHHH---HHHHCCSCSEEEEEEECC-BC-------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHH---HHHHCCCCCCHHHEECCE-EEECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 55655663167699999---997499740121223337-9850646777688703199998627988998999986
No 13
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.21 E-value=4.8e-10 Score=87.04 Aligned_cols=225 Identities=17% Similarity=0.133 Sum_probs=129.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCCC-------C------CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 843388785015999999999999-----7188499997048666-------3------886799999999886589888
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAK-----RTGGKFILRIEDTDSK-------R------STLESENAVMQSLKWCGLNWD 73 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~-----~~~g~f~lRieDtd~~-------R------~~~~~~~~i~~~l~wlgl~~D 73 (492)
.|.|-++.||||+||+++.-+++| -..-.|+.-|.|.|.+ . ....+.+...++++-||+..+
T Consensus 29 GpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~V~~v~nitDiddKi~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~i~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88578984410140299999999999975995189974161238999999984959999999999999999999579999
Q ss_pred CCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67655887676323262899999999999889824514-----8899977668876643100023665557883330011
Q gi|255764513|r 74 EGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCF-----CSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERL 148 (492)
Q Consensus 74 e~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~-----~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~ 148 (492)
.-. -+.|+..+...+++++|+++|.||++- |..+ .-+.|. . ++......
T Consensus 109 ~~~--------~r~t~~i~~~i~~i~~L~~~g~aY~~~~g~vyf~~~-------------~~~~yg-~---l~~~~~~~- 162 (461)
T 1li5_A 109 DME--------PRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVP-------------TDPTYG-V---LSRQDLDQ- 162 (461)
T ss_dssp SBC--------CBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGG-------------GCTTTT-T---TTTC-----
T ss_pred CEE--------ECCCHHHHHHHHHHHHHHHCCCEEEECCCCEECCCC-------------CCCCCC-C---CCCCCCCC-
T ss_conf 874--------111489999999999998679889726886733565-------------530115-5---11002000-
Q ss_pred HHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECC-------------CCCHHHHHHH--HHHHHH-HHHH
Q ss_conf 20257740788622431143047513402136432356410004-------------5324898678--876444-4444
Q gi|255764513|r 149 SQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKS-------------DGMPTYHLAN--VIDDHL-MKIT 212 (492)
Q Consensus 149 ~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~-------------dg~ptY~~a~--vvDD~~-m~it 212 (492)
+..|. |.-.+ + .-.+-.||+|+|+ .|.|--|.-| +.-|++ -.+.
T Consensus 163 ~~~~~----~~~~~--------~--------~K~~~~DF~Lwk~~~~~e~~w~spWG~grPgWhiecs~m~~~~lg~~~D 222 (461)
T 1li5_A 163 LQAGA----RVDVV--------D--------DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFD 222 (461)
T ss_dssp --------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEE
T ss_pred CCCCC----CCCCC--------C--------CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHH
T ss_conf 12467----65656--------5--------6788364665387889987667887755897266758999988270532
Q ss_pred HHHCCCCCC----CHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 311223543----0247889999985100000-101455531101322122343-3024566629773779989985067
Q gi|255764513|r 213 HVARGEEWI----SSVPKHILLYQYFNFPIPE-FIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFV 286 (492)
Q Consensus 213 hviRg~d~~----~~t~~q~~l~~al~~~~p~-f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGw 286 (492)
-..=|.||+ .|-+.|. ..+.|-+.|. |.|...+ ..+|+|+||.-|. +++.++. .+|-|+++.-|+..--+
T Consensus 223 ih~gG~Dl~fpHhene~aq~--~a~~g~~~~~~w~h~g~~-~~~g~KMSKSlgn~~~~~~~~-~~~~~~~~R~~lLs~hY 298 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQS--TCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVL-KYYDAETVRYFLMSGHY 298 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHH--HHHSSSCCEEEECCBCCE-EETTBCCCGGGTCCCBHHHHH-TTSCHHHHHHHHHSSCT
T ss_pred CCCCCHHHCCCCCCCHHHHH--HHHHCCCCCHHHHHCCCC-CCCCCCCCCCCCCEEEHHHHH-CCCCHHHHHHHHHHCCC
T ss_conf 26575410688643599999--987558850077635822-258764464468874488864-12776999999985367
No 14
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.10 E-value=2.2e-10 Score=89.36 Aligned_cols=293 Identities=21% Similarity=0.211 Sum_probs=136.4
Q ss_pred CCEEEECC-CCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77056348-43388785015999999999999--718849999---7048666388679999999988658988867655
Q gi|255764513|r 5 SKVRVRIA-PSPTGEPHIGTAYTALFNYLIAK--RTGGKFILR---IEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~Rfa-PsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lR---ieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.+|.+-|. |.|||+||+||+|+|++-.-+|| ..-|-=+.| |.|.-.. ...++..+...|..++.....
T Consensus 103 ~~v~VEf~SpNp~k~lHvGHlRstiiGd~laril~~~G~~V~r~nyigD~G~Q------i~~~~~~~~~~~~~~~~~~~~ 176 (592)
T 1iq0_A 103 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQ------AAETLFALRHYGLTWDGKEKY 176 (592)
T ss_dssp EEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHH------HHHHHHHHHHTTCCCCSSSCH
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH------HHHHHHHHHHHCCCCCCCHHH
T ss_conf 77999845898999864012787898899999997079987688752887335------379999999856432332245
Q ss_pred CCCCCCEE-------CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHH--HCCCCCCCCCCC--C----CHH
Q ss_conf 88767632-------32628999999999998898245148899977668876643--100023665557--8----833
Q gi|255764513|r 79 GGAYGPYR-------QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKR--NIPSRYDGHCLK--L----SSQ 143 (492)
Q Consensus 79 ~g~~~p~~-------QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~--~~~~~Y~~~~r~--l----~~~ 143 (492)
..-++-|+ ...+........-.-.+.+ ...++.........+. .....||..... + .-+
T Consensus 177 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~~e~~------~~~e~~~~~l~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~ 250 (592)
T 1iq0_A 177 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERG------ELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQ 250 (592)
T ss_dssp HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTT------TTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHCCEECCCCEECCCCCCCCHH
T ss_conf 6650203666523467778887799999998776------7999999999988878987454412032013322376338
Q ss_pred HHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCEECCC------CCCCCCCEECCCCCHHHHHHHHHHHHHHHH----HH
Q ss_conf 30011202577407886224311430475134021364------323564100045324898678876444444----43
Q gi|255764513|r 144 EIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPW------NAVDMQVLLKSDGMPTYHLANVIDDHLMKI----TH 213 (492)
Q Consensus 144 e~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~------~~~~D~vi~r~dg~ptY~~a~vvDD~~m~i----th 213 (492)
.....+.+ ...+. +. ..+ ...|...++. ....|+|++|+||+|||...-+-- |..++ +.
T Consensus 251 ~~~~~l~~-~~~~~--~~-~~~------~~~g~~~~~~~~~~~~~~~~~~vl~rsdG~~tY~~~DiA~-~~~k~~~~~~~ 319 (592)
T 1iq0_A 251 KALALLEQ-SPHVF--RP-REG------KYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAF-QFWKMGILEGL 319 (592)
T ss_dssp HHHHHHTT-STTEE--CC-SSS------TTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHH-HHHHTTSSCCC
T ss_pred HHHHHHHH-CCCEE--EC-CCC------CCCEEEEEECCCEECCCCCCEEEEECCCCCEEEECHHHHH-HHHHHCCCCCC
T ss_conf 88899986-23023--12-455------6542799832302115777605898268955775203788-88850442110
Q ss_pred HHCCCCC----------------------CCH------HHHHHHHH---HHHHHCC--CHHHHHH--HHHHHHCCCCCCC
Q ss_conf 1122354----------------------302------47889999---9851000--0010145--5531101322122
Q gi|255764513|r 214 VARGEEW----------------------ISS------VPKHILLY---QYFNFPI--PEFIHLP--LIKNPDKSKLSKR 258 (492)
Q Consensus 214 viRg~d~----------------------~~~------t~~q~~l~---~al~~~~--p~f~H~p--li~~~~g~klSKR 258 (492)
.+|+.|+ +-+ ..-|.+++ +.+|++. -+.-|++ ++. .+|+|||+|
T Consensus 320 ~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~I~vvd~~Q~~h~~~v~~~l~~~g~~~~~~~~~hi~~g~v~-~~g~kMStR 398 (592)
T 1iq0_A 320 RFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEGRQMSGR 398 (592)
T ss_dssp EEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETTBCSCC-
T ss_pred CEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEE-CCCEEEECC
T ss_conf 0002233423777776542020012200345444024203899999999985787133110246678997-276344314
Q ss_pred CCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHH-----HHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 343-30245666297737799899850676665530110146-----7776520211375544201565566435
Q gi|255764513|r 259 RNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQ-----QLIHHFDLHHLSKAGAVFDKQKLDWLNG 327 (492)
Q Consensus 259 ~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~-----eli~~FdL~~I~Ks~A~FD~eKL~wlN~ 327 (492)
.|. +.+.++.++. .+....-+..-+.+. .+.| ... ..+..|+|++=..++-.||+++..-+++
T Consensus 399 ~G~~i~l~dll~e~--~~~~~~~~~~~~~~~--~~~~--~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~l~~~g 467 (592)
T 1iq0_A 399 KGLAVSVDEVLEEA--TRRARAIVEEKNPDH--PDKE--EAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp ---CCBHHHHHHHH--HHHHHHHHHHHCTTC--SCHH--HHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSS
T ss_pred CCCEEEHHHHHHHH--HHHHHHHHHHCCCCC--HHHH--HHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 77546899999999--999999876402320--3456--799885320368763215765566769999965328
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.06 E-value=4.8e-10 Score=87.05 Aligned_cols=281 Identities=12% Similarity=0.057 Sum_probs=132.1
Q ss_pred CCCCCCE-EEECCCCCCCCCCHHHHHHHHHHHHHHHHC---C--CEEEEEECCCCC---------CCC----CHHHHHHH
Q ss_conf 9888770-563484338878501599999999999971---8--849999704866---------638----86799999
Q gi|255764513|r 1 MISSSKV-RVRIAPSPTGEPHIGTAYTALFNYLIAKRT---G--GKFILRIEDTDS---------KRS----TLESENAV 61 (492)
Q Consensus 1 ~~~~~~v-~~RfaPsPtG~lH~G~~rtal~n~l~a~~~---~--g~f~lRieDtd~---------~R~----~~~~~~~i 61 (492)
|+.+.+. +|==-|-|||.|||||||+.+.--.++|-. | -.|+-=++|.|. .++ .+.+.+.+
T Consensus 1 ~~~~~~~~i~~~~py~nG~lHlGHa~~~i~~Di~~R~~r~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~ 80 (497)
T 2csx_A 1 MTLMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERF 80 (497)
T ss_dssp CCSSCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99888879968998888971001048799999999999823998756475341669999999985999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99988658988867655887676323262899999999999889824514889997766887664310002366555788
Q gi|255764513|r 62 MQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLS 141 (492)
Q Consensus 62 ~~~l~wlgl~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~ 141 (492)
.++++++|++||.-... . ..+....=+....+|.++|.+|.+......-...... ... ....+++.|....
T Consensus 81 ~~~~~~l~i~~d~~~~t---~----~~~~~~~~~~~~~~l~~~g~iy~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 151 (497)
T 2csx_A 81 KKLWEFLKIEYTKFIRT---T----DPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEF-KSE-AELAEDHTCPIHQ 151 (497)
T ss_dssp HHHHHHTTCCCSEEEET---T----SHHHHHHHHHHHHHHHHTTCEEEEEC-----------------------------
T ss_pred HHHHHHCCCCCCCCCCC---C----CHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCC-CCC-HHHCCCCCCCCCC
T ss_conf 99999859888767625---8----8787655889999987626600010252234243433-560-2320356555444
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCEE-----------ECCCCCCCCEE-CCCCCCCCCCEECC-----CCCH--------
Q ss_conf 33300112025774078862243114-----------30475134021-36432356410004-----5324--------
Q gi|255764513|r 142 SQEIERLSQEQKKHVVRLTVPNQGSC-----------VFQDKVYGEME-IPWNAVDMQVLLKS-----DGMP-------- 196 (492)
Q Consensus 142 ~~e~~~~~~~g~~~~iR~k~p~~~~~-----------~~~D~i~G~~~-~~~~~~~D~vi~r~-----dg~p-------- 196 (492)
.. ......+.+.|++...... ...+..+..+. +....+.|..+.|. .|.|
T Consensus 152 ~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~wgi~~p~~~~~~ 226 (497)
T 2csx_A 152 KK-----CEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHT 226 (497)
T ss_dssp -----------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEE
T ss_pred CC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45-----2136787503231320899999998499764858899999999970364357775422468886777789962
Q ss_pred ---------HHHHHH--------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHCCCCCCC
Q ss_conf ---------898678--------876444444431122354302478899999851000001-01455531101322122
Q gi|255764513|r 197 ---------TYHLAN--------VIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEF-IHLPLIKNPDKSKLSKR 258 (492)
Q Consensus 197 ---------tY~~a~--------vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f-~H~pli~~~~g~klSKR 258 (492)
+|..+. ..|=|..|+.. +|+ |..+.+ ....|+|.+.|.. .|...+ ..+|+|+||.
T Consensus 227 ~~~~~d~~~~~~~~~~~~~~~~~p~di~~~G~D~-~~~--h~~~~~---a~~~a~~~~~p~~~~~~g~~-~~~G~KmSKS 299 (497)
T 2csx_A 227 IYVWFDALFNYISALEDKVEIYWPADLHLVGKDI-LRF--HTVYWP---AFLMSLGYELPKKVFAHGWW-TVEGKKMSKT 299 (497)
T ss_dssp ECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGG-HHH--HHTHHH---HHHHHHTCCCCSCEEEECCE-ESSSSBCCTT
T ss_pred CCEECCCCCCCHHHCCCCCCCCCCCCEEECCCCC-CHH--HHHHHH---HHHHHCCCCCCCEEEECCCE-EECCCCCCCC
T ss_conf 0201133322111200112447887223067653-005--799999---99998499999889855848-6368523356
Q ss_pred CCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHH
Q ss_conf 343-302456662977377998998506766655301101467776520
Q gi|255764513|r 259 RNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 (492)
Q Consensus 259 ~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~Fd 306 (492)
.|. +.+.++.++ |-|+++.=|++..+- .+.+-.|+.+++.+...
T Consensus 300 ~gn~i~~~~~l~~-~g~D~lR~~l~~~~~---~~~d~~f~~~~~~~~~~ 344 (497)
T 2csx_A 300 LGNVVDPYEVVQE-YGLDEVRYFLLREVP---FGQDGDFSKKAILNRIN 344 (497)
T ss_dssp TTCCCCHHHHHHH-HCHHHHHHHHHHSSC---TTSCEECCHHHHHHHHH
T ss_pred CCCCCCHHHHHHH-CCCCHHHHHHHHCCC---CCCCCCCCHHHHHHHHH
T ss_conf 8865799999873-298588989986088---77765547999999999
No 16
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=98.98 E-value=7.6e-08 Score=72.12 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=124.0
Q ss_pred CCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7705634-84338878501599999999999971--8849999---7048666388679999999988658988867655
Q gi|255764513|r 5 SKVRVRI-APSPTGEPHIGTAYTALFNYLIAKRT--GGKFILR---IEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~Rf-aPsPtG~lH~G~~rtal~n~l~a~~~--~g~f~lR---ieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.+|.+=| .|.|++.||+||+|++++---+||-. -|-=+.| |.|.-.. ..-..-.+......--..-+ +.
T Consensus 30 ~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~V~r~nylgD~G~Q--~g~l~~~~~~~~~~~~~~~~-~~-- 104 (464)
T 3fnr_A 30 ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQ--IYLLGLSILLSVKESILHEN-VE-- 104 (464)
T ss_dssp CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHH--HHHHHHHHHHHHHHHTSCCC-CC--
T ss_pred CEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHH--HHHHHHHHHHHHHHHHCCCC-CC--
T ss_conf 87999755999898752520041699999999999869927899987885999--99999999998555530455-21--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHH---------HHHHHHHHHHCCCCCCC---C--CCCCCHHH
Q ss_conf 8876763232628999999999998898245148899977---------66887664310002366---5--55788333
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLE---------EMRRAQRKRNIPSRYDG---H--CLKLSSQE 144 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~---------~~r~~~~~~~~~~~Y~~---~--~r~l~~~e 144 (492)
-+..-|.+....+...+..++. +..+.+-....++. ..++.....+. .||- . ......+.
T Consensus 105 -~~~~~y~~~~~~~~~~~~~~~~---~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~v--~fD~~~~ES~~~~~~~~~ 178 (464)
T 3fnr_A 105 -YPEQYYKGEYIVDLAKEAFEKF---GKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKI--KIDSYVSERSYYDALNAT 178 (464)
T ss_dssp -CCSSCCCSHHHHHHHHHHHHHH---CGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC--CCSCEEEGGGGSTTHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEHHHHHHHHHHHHH
T ss_conf -0455424666668999999987---7753115569999999999999999987997085--100001157888779999
Q ss_pred HHHHHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHH---HHHHHHHHH--HHCCCC
Q ss_conf 001120257740788622431143047513402136432356410004532489867887---644444443--112235
Q gi|255764513|r 145 IERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVI---DDHLMKITH--VARGEE 219 (492)
Q Consensus 145 ~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vv---DD~~m~ith--viRg~d 219 (492)
++.....|. + .. .++.+.+...-.| ...|.||+|+||++||.-.-+. +-...+... .|-|.|
T Consensus 179 ~~~l~~~~~--~--~e--~~ga~~~~~~~~~-------d~~~~~l~ksdG~~~Y~t~Dia~~~~k~~~~~d~~I~v~g~d 245 (464)
T 3fnr_A 179 LESLKEHKG--I--YE--QEGKIWLASSQKG-------DEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGAD 245 (464)
T ss_dssp HHHHHHTTC--E--EE--ETTEEEECGGGGT-------CSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGG
T ss_pred HHHHHHCCC--E--EE--ECCCEEEECCCCC-------CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 998864598--6--85--3798775011037-------887852796079741014589999998722897289998660
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHC--CCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 430247889999985100000101---455531101--3221223433-0245666297737799899850676665530
Q gi|255764513|r 220 WISSVPKHILLYQYFNFPIPEFIH---LPLIKNPDK--SKLSKRRNPT-SISYYSAMGYLPEALINFLALLFVHKSEDDD 293 (492)
Q Consensus 220 ~~~~t~~q~~l~~al~~~~p~f~H---~pli~~~~g--~klSKR~~~~-~i~~~~~~GylPeAilNyLalLGws~~~~d~ 293 (492)
+.---.......+++|+..+...| .-+.+..+| .|+|+|.|.. .+.+.-++ +|
T Consensus 246 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~dll~e-------------vg-------- 304 (464)
T 3fnr_A 246 HHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE-------------IG-------- 304 (464)
T ss_dssp GGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH-------------HC--------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHH-------------HH--------
T ss_conf 466776799999975677556405898888997698023441478883559999999-------------74--------
Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 110146777652021137554420156556
Q gi|255764513|r 294 ELMDMQQLIHHFDLHHLSKAGAVFDKQKLD 323 (492)
Q Consensus 294 Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~ 323 (492)
-..++-|+|+.-..++-.||++++.
T Consensus 305 -----~~airy~~L~~~~~~~~~Fd~~~~~ 329 (464)
T 3fnr_A 305 -----SDALRYIFLSKKCDTHLEFDISDLQ 329 (464)
T ss_dssp -----HHHHHHHTTSSCTTSCEEEEGGGGG
T ss_pred -----HHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf -----7787666531465555534668775
No 17
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=98.97 E-value=4.4e-10 Score=87.28 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=63.5
Q ss_pred EECC-CCCCCCCCHHHHHHHHHHHHHHHH--CCCE---EEEEECCCCC---------CC----CCHHHHHHHHHHHHHCC
Q ss_conf 6348-433887850159999999999997--1884---9999704866---------63----88679999999988658
Q gi|255764513|r 9 VRIA-PSPTGEPHIGTAYTALFNYLIAKR--TGGK---FILRIEDTDS---------KR----STLESENAVMQSLKWCG 69 (492)
Q Consensus 9 ~Rfa-PsPtG~lH~G~~rtal~n~l~a~~--~~g~---f~lRieDtd~---------~R----~~~~~~~~i~~~l~wlg 69 (492)
+-.| |-|+|.||||||||.+..-.++|- ..|. |+-=.||.|. .+ ....+.+.+.++|+.||
T Consensus 7 it~~~py~ng~lHiGHa~~~v~~Di~~R~~r~~G~~V~~v~g~D~~g~~I~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 86 (500)
T 2d5b_A 7 VTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLG 86 (500)
T ss_dssp EECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 80799888997233405878999999999993599568208627406999999998599999999999999999999959
Q ss_pred CCCCCCCCCCCCCCCEECCC--CHHHHHHHHHHHHHCCCEEEC
Q ss_conf 98886765588767632326--289999999999988982451
Q gi|255764513|r 70 LNWDEGPDIGGAYGPYRQSE--RKNIYQPYVQNLLEKKLAFRC 110 (492)
Q Consensus 70 l~~De~~~~~g~~~p~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (492)
+.||.-+ +-+. ....-++....|.++|.+|.|
T Consensus 87 i~~D~~~---------~t~~~~~~~~v~~~~~~l~~~G~~y~~ 120 (500)
T 2d5b_A 87 IAYDDFI---------RTTEERHKKVVQLVLKKVYEAGDIYYG 120 (500)
T ss_dssp CCCSEEE---------ETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9888785---------369878877899988889866983134
No 18
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=98.97 E-value=2.7e-08 Score=75.20 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHHHH-----HHHH--HCCCCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCC
Q ss_conf 32356410004532489867887644444-----4431--12235430247889999985100000-1014555311013
Q gi|255764513|r 182 NAVDMQVLLKSDGMPTYHLANVIDDHLMK-----ITHV--ARGEEWISSVPKHILLYQYFNFPIPE-FIHLPLIKNPDKS 253 (492)
Q Consensus 182 ~~~~D~vi~r~dg~ptY~~a~vvDD~~m~-----ithv--iRg~d~~~~t~~q~~l~~al~~~~p~-f~H~pli~~~~g~ 253 (492)
+..++.||+||||+|||.. .=|-=|..+ ..++ |=|.||-.-.++-..+.++||++... .-|++. -...
T Consensus 331 ~~~~~~vl~ksDGt~tY~t-~DIAyh~~K~~r~~fD~~I~V~gadq~~h~~~l~~~l~~lg~~~~~~~~hv~~---g~~~ 406 (607)
T 1f7u_A 331 KKLGKAIVQKSDGTTLYLT-RDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF---GMVQ 406 (607)
T ss_dssp TTTCEEEEECTTSCCCHHH-HHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC---CCEE
T ss_pred CCCCCEEEEECCCCEEECH-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHCCCEEEE---CCCC
T ss_conf 3566425881699610020-08899999887107775665146036579999999999828972103413431---1222
Q ss_pred CCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHH--------HHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 22122343-30245666297737799899850676665530110146--------7776520211375544201565566
Q gi|255764513|r 254 KLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQ--------QLIHHFDLHHLSKAGAVFDKQKLDW 324 (492)
Q Consensus 254 klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~--------eli~~FdL~~I~Ks~A~FD~eKL~w 324 (492)
+||+|.|. +.+.++.++- -+.+...+..- ... ..++-+.+ ..+..|++++=..++-.||+++..-
T Consensus 407 ~mstR~G~~v~L~dll~e~--~~~~~~~~~~~--~~~--~~~~~~~~~~a~~vg~~avr~~~l~~~~~~~~~Fd~d~~~~ 480 (607)
T 1f7u_A 407 GMSTRKGTVVFLDNILEET--KEKMHEVMKKN--ENK--YAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS 480 (607)
T ss_dssp SCCGGGTCCCBHHHHHHHH--HHHHHHHHHTC--HHH--HTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHH--HHHHHHHHHHH--CCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 4553000243389999999--99999999850--233--10357888999997255889999860445554457999864
Q ss_pred HHH
Q ss_conf 435
Q gi|255764513|r 325 LNG 327 (492)
Q Consensus 325 lN~ 327 (492)
+++
T Consensus 481 ~~g 483 (607)
T 1f7u_A 481 FEG 483 (607)
T ss_dssp CSS
T ss_pred CCC
T ss_conf 048
No 19
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=98.96 E-value=2.4e-09 Score=82.29 Aligned_cols=274 Identities=13% Similarity=0.116 Sum_probs=131.6
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 634843388785015999999999999--71884999970486----------------663886799999999886589
Q gi|255764513|r 9 VRIAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTD----------------SKRSTLESENAVMQSLKWCGL 70 (492)
Q Consensus 9 ~RfaPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd----------------~~R~~~~~~~~i~~~l~wlgl 70 (492)
|==-|-|||.|||||||+.+..-.+|| +..|.=++-+=-|| .+-....+.+.|.++++.|||
T Consensus 17 ~~~~Py~nG~lHiGHa~~~~~~Dii~R~~r~~G~~v~~v~G~D~hG~~i~~~A~k~g~~~~e~~~~~~~~~~~~~~~l~i 96 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 58998888971004027799999999999823997142581173479999999984999999999999999999999699
Q ss_pred CCCCCCCCCCCCCCEECC--CCHHHHHHHHHHHHHCCCEEE-----CCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCC
Q ss_conf 888676558876763232--628999999999998898245-----14889997766887664310002366555--788
Q gi|255764513|r 71 NWDEGPDIGGAYGPYRQS--ERKNIYQPYVQNLLEKKLAFR-----CFCSTERLEEMRRAQRKRNIPSRYDGHCL--KLS 141 (492)
Q Consensus 71 ~~De~~~~~g~~~p~~QS--~r~~~y~~~~~~L~~~g~aY~-----c~~t~eel~~~r~~~~~~~~~~~Y~~~~r--~l~ 141 (492)
.||- .|+-+ +....-+++..+|.++|.+|. .||...+- .........+...|. ..+
T Consensus 97 ~~D~---------~~~T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~ 161 (524)
T 2x1l_A 97 SFDR---------FIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDER------FFTENETTEQPDGTRIATET 161 (524)
T ss_dssp CCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE------EECGGGEEECTTSCEEETTT
T ss_pred CCCC---------CCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCE------EEECCCCCCCCCCCEECCCC
T ss_conf 4788---------81169889999999999889864948970541455324533------52000114568851000336
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCE--EEC----CCCCC-----CCE-ECCCCCCCCCCEECCC---CCHHHH-----HH
Q ss_conf 3330011202577407886224311--430----47513-----402-1364323564100045---324898-----67
Q gi|255764513|r 142 SQEIERLSQEQKKHVVRLTVPNQGS--CVF----QDKVY-----GEM-EIPWNAVDMQVLLKSD---GMPTYH-----LA 201 (492)
Q Consensus 142 ~~e~~~~~~~g~~~~iR~k~p~~~~--~~~----~D~i~-----G~~-~~~~~~~~D~vi~r~d---g~ptY~-----~a 201 (492)
...+ .......+-|++..... ..+ .|.+. ... .+-.+.+.|..+-|.+ |.|... |-
T Consensus 162 g~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~v~~ 237 (524)
T 2x1l_A 162 GAPV----TWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMY 237 (524)
T ss_dssp CCBE----EEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEEC
T ss_pred CCCC----EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9866----564056420130777999999998486545856666546887655464445567778889999997563333
Q ss_pred HHHHHHHHHHH-------------------HHHCCCCCCCH-HHHHHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCCCCC
Q ss_conf 88764444444-------------------31122354302-4788999998510000010-145553110132212234
Q gi|255764513|r 202 NVIDDHLMKIT-------------------HVARGEEWISS-VPKHILLYQYFNFPIPEFI-HLPLIKNPDKSKLSKRRN 260 (492)
Q Consensus 202 ~vvDD~~m~it-------------------hviRg~d~~~~-t~~q~~l~~al~~~~p~f~-H~pli~~~~g~klSKR~~ 260 (492)
+-.|=..+.++ -..=|.|.+-- +-....+..+.|.+.|+.. |... +..+|+||||..|
T Consensus 238 ~Wfds~~~~~~~~~~~~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~~~~~~~~i~~~g~-l~~~G~KMSKSlG 316 (524)
T 2x1l_A 238 VWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGW-LLNRGEKMSKSIG 316 (524)
T ss_dssp HHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECC-EEECSCSEETTTE
T ss_pred EECHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEHHHHHHHHHHHHHHCCCCCCCEEEECEE-EECCCCEECCCCC
T ss_conf 310100231133688865757677248850788312300799999999998479998858996418-9638857137799
Q ss_pred C-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHH
Q ss_conf 3-302456662977377998998506766655301101467776520
Q gi|255764513|r 261 P-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 (492)
Q Consensus 261 ~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~Fd 306 (492)
. +.+.++.++ |-++|+.=||+..+- .+.+--|+.+++...-+
T Consensus 317 N~i~~~~~l~~-ygaD~lR~~l~~~~~---~~~d~~f~~~~~~~~~n 359 (524)
T 2x1l_A 317 NVVDPVNLVDT-FGLDQVRYFLLREVP---FGQDGSYNEDAIIGRVN 359 (524)
T ss_dssp ESSCHHHHHHH-HCHHHHHHHHHHHSC---TTSCEEECHHHHHHHHH
T ss_pred CCCCHHHHHHH-CCCHHHHHHHHHCCC---CCCCCCCCHHHHHHHHH
T ss_conf 54786999986-394399999987087---67776566899999999
No 20
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=98.91 E-value=2e-08 Score=76.02 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 4843388785015999999999999--718849999704866----------------6388679999999988658988
Q gi|255764513|r 11 IAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTDS----------------KRSTLESENAVMQSLKWCGLNW 72 (492)
Q Consensus 11 faPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l~wlgl~~ 72 (492)
=-|-|||.|||||||+.+..-.++| +..|.=++.+=+||. +-..+.+.+.+.++++.||++|
T Consensus 33 ~~pY~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~~~e~~~~~~~~~~~~~~~lgi~~ 112 (564)
T 3kfl_A 33 PIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDM 112 (564)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99888885235666889999999999993699703408368761999999998599999999999999999999939817
Q ss_pred CCCCCCCCCCCCEECCC--CHHHHHHHHHHHHHCCCEEEC
Q ss_conf 86765588767632326--289999999999988982451
Q gi|255764513|r 73 DEGPDIGGAYGPYRQSE--RKNIYQPYVQNLLEKKLAFRC 110 (492)
Q Consensus 73 De~~~~~g~~~p~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (492)
|- .++-++ ..+.-++...+|.++|..|..
T Consensus 113 D~---------~~~T~~~~~~~~v~~~f~~l~~~g~i~~~ 143 (564)
T 3kfl_A 113 NY---------FIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp SE---------EEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CC---------CCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 87---------82159889999999999971215207960
No 21
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=98.89 E-value=8.6e-07 Score=64.95 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHC
Q ss_conf 056348433887850159999999999997--18849999704866----------------638867999999998865
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKR--TGGKFILRIEDTDS----------------KRSTLESENAVMQSLKWC 68 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~--~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l~wl 68 (492)
++|==-|-|||.||||||++.+..-.+||- ..|.=++=+=+||. +-..+.+.+.|.++++.|
T Consensus 21 ~vt~~~P~~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~v~~~~G~D~~g~~i~~~a~~~g~~p~e~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99769988889611325587999999999999469954550704557399999999859999999999999999999974
Q ss_pred CCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 89888676558876763232628999999999998898245
Q gi|255764513|r 69 GLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFR 109 (492)
Q Consensus 69 gl~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~ 109 (492)
||+||--... . -.+..+.-+++..+|.++|..|.
T Consensus 101 ~i~~d~~~~T---~----~~~~~~~v~~if~~L~~~G~iy~ 134 (560)
T 3h99_A 101 NISYDNYHST---H----SEENRQLSELIYSRLKENGFIKN 134 (560)
T ss_dssp TCCCSEEEES---S----SHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCCC---C----CHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 9827888617---9----88999999999999997797202
No 22
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=98.79 E-value=1.3e-07 Score=70.44 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHH---------------------------------HHH--HCCCCCCCHHHHHHHHH
Q ss_conf 4100045324898678876444444---------------------------------431--12235430247889999
Q gi|255764513|r 187 QVLLKSDGMPTYHLANVIDDHLMKI---------------------------------THV--ARGEEWISSVPKHILLY 231 (492)
Q Consensus 187 ~vi~r~dg~ptY~~a~vvDD~~m~i---------------------------------thv--iRg~d~~~~t~~q~~l~ 231 (492)
.||.||||+|||...-+ -=|..++ .+| |=|.||-.--.+-..+.
T Consensus 320 ~vl~ksDGt~tY~t~DI-A~~~~K~~r~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iI~V~g~~q~~~~~~l~~~l 398 (629)
T 2zue_A 320 LVLRRSDGTATYTGKDI-AYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYAL 398 (629)
T ss_dssp EEEECTTSCBCHHHHHH-HHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEHHHH-HHHHHHHHCCCCCHHHCCCCCCCEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 03781499545631678-87776650134201200245543045353045554304635798854763033799999999
Q ss_pred HHHHHCCC--HHHHHHH--HHHHHCCCCCCCCCCC---CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHH----
Q ss_conf 98510000--0101455--5311013221223433---02456662977377998998506766655301101467----
Q gi|255764513|r 232 QYFNFPIP--EFIHLPL--IKNPDKSKLSKRRNPT---SISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ---- 300 (492)
Q Consensus 232 ~al~~~~p--~f~H~pl--i~~~~g~klSKR~~~~---~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~e---- 300 (492)
++|||..| ..-|++. +.+++ .|+|+|.|.. .+.++.+.- -+...+.+..-+ +...+.|+-.+.+
T Consensus 399 ~~lg~~~~~~~l~h~~~g~v~~~~-~kms~r~g~~v~~~l~dll~e~--~~r~~~~i~~~~--~~~~~~~~~~~a~~vg~ 473 (629)
T 2zue_A 399 QLLGFEDAAANLYHLAYEHVERPE-GKFSGRKGTWVGFTVDEVIQEA--VKRARELIEEKN--PALSDEEKAEVAEKVGI 473 (629)
T ss_dssp HHTTCHHHHHTEEEEEECCEEBTT-BCCCTTTTTTTTCBHHHHHHHH--HHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCEEEEEEEEEECCC-CCCCEEECCEEHHHHHHHHHHH--HHHHHHHHHHHC--CCCHHHHHHHHHHHHCC
T ss_conf 982799600353788876786277-7620001120011377799999--999999998506--53228899999987350
Q ss_pred -HHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf -776520211375544201565566435
Q gi|255764513|r 301 -LIHHFDLHHLSKAGAVFDKQKLDWLNG 327 (492)
Q Consensus 301 -li~~FdL~~I~Ks~A~FD~eKL~wlN~ 327 (492)
.++-|+|++=..++-.||++++.-+++
T Consensus 474 ~Airy~~L~~~~~~~~~FD~d~~l~~~g 501 (629)
T 2zue_A 474 GAIRYNLIKYSPDKKIIFRWEDVLNFEG 501 (629)
T ss_dssp HHHHHHHHSSCTTSCEECCHHHHSCCSS
T ss_pred HHEEEEEHCCCCCCCCCCCHHHHHHHCC
T ss_conf 0235110002655343557999963138
No 23
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.62 E-value=4e-07 Score=67.18 Aligned_cols=279 Identities=13% Similarity=0.193 Sum_probs=132.7
Q ss_pred EEECCCCCCCCCCHHHHH-HHHHHHHHHHH--CCCEEEEEECCCCC------------CC----CCHHHHHHHHHHHHHC
Q ss_conf 563484338878501599-99999999997--18849999704866------------63----8867999999998865
Q gi|255764513|r 8 RVRIAPSPTGEPHIGTAY-TALFNYLIAKR--TGGKFILRIEDTDS------------KR----STLESENAVMQSLKWC 68 (492)
Q Consensus 8 ~~RfaPsPtG~lH~G~~r-tal~n~l~a~~--~~g~f~lRieDtd~------------~R----~~~~~~~~i~~~l~wl 68 (492)
.|==-|-|||.|||||+. +.|-.-.+||- ..|.=.+-+=-||. .+ .++.+.+.|.+.+++|
T Consensus 6 Ittp~Py~NG~lHiGH~~~~~l~aDi~~Ry~rm~G~~v~~~~GtDeHG~~i~~~a~~~g~~p~e~~d~~~~~~~~~~~~l 85 (722)
T 1rqg_A 6 VTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRA 85 (722)
T ss_dssp EEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 96589898988566743337899999999998079955863866620799999999829999999999999999999983
Q ss_pred CCCCCCCCCCCCCCCCEEC--C-CCHHHHHHHHHHHHHCCCEEEC-----CCCHHHHHHHHHHHHHHHCCCC------CC
Q ss_conf 8988867655887676323--2-6289999999999988982451-----4889997766887664310002------36
Q gi|255764513|r 69 GLNWDEGPDIGGAYGPYRQ--S-ERKNIYQPYVQNLLEKKLAFRC-----FCSTERLEEMRRAQRKRNIPSR------YD 134 (492)
Q Consensus 69 gl~~De~~~~~g~~~p~~Q--S-~r~~~y~~~~~~L~~~g~aY~c-----~~t~eel~~~r~~~~~~~~~~~------Y~ 134 (492)
|+.+|- |+. + .....-++...+|.++|+.|.- ||...+-- + ....-.|.+|. +.
T Consensus 86 gis~D~----------f~rT~~~~~~~~v~~~f~~L~~~G~Iy~~~~~~~yc~~~~~~-l-~d~~v~g~cp~~~~~d~~g 153 (722)
T 1rqg_A 86 KISFDF----------FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMF-L-PDRFVIGTCPYCGAEDQKG 153 (722)
T ss_dssp TCCCSE----------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBC-C-CGGGCCSBCSSSCCSCCCT
T ss_pred CCCCCC----------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC-C-CCHHEECCCCCCCCCCCCC
T ss_conf 980558----------975799899999999999999779983146354567763526-1-5620345246656544555
Q ss_pred CCCCCC----CHHHHH--HHHHCCCCCEEE------EEECCC--------CEEECCCCCCCCEE-CCCCCCCCCCEECCC
Q ss_conf 655578----833300--112025774078------862243--------11430475134021-364323564100045
Q gi|255764513|r 135 GHCLKL----SSQEIE--RLSQEQKKHVVR------LTVPNQ--------GSCVFQDKVYGEME-IPWNAVDMQVLLKSD 193 (492)
Q Consensus 135 ~~~r~l----~~~e~~--~~~~~g~~~~iR------~k~p~~--------~~~~~~D~i~G~~~-~~~~~~~D~vi~r~d 193 (492)
..|-.. ..++.. .....|.+..+| |+++.- ....|...++..+. +-...+.|..|-|.=
T Consensus 154 ~~c~~~~~~~~~~~~~~p~c~r~~~~ve~~~~~qwF~kl~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~l~Dw~ISRq~ 233 (722)
T 1rqg_A 154 DQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDL 233 (722)
T ss_dssp TTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECC
T ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 42024577467200368855777974069851334430688888886520257998123231104430576332223447
Q ss_pred --CCH---------------------HHHHHHHHH--------HHH---------HHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf --324---------------------898678876--------444---------4444311223543024788999998
Q gi|255764513|r 194 --GMP---------------------TYHLANVID--------DHL---------MKITHVARGEEWISSVPKHILLYQY 233 (492)
Q Consensus 194 --g~p---------------------tY~~a~vvD--------D~~---------m~ithviRg~d~~~~t~~q~~l~~a 233 (492)
|.| .|.-+.... |.. -...|++ |.| ++.-|...+-|
T Consensus 234 ~WGipiP~~~~~~~~~v~yvw~da~~~y~s~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~-gkD---i~~fh~~~~pa 309 (722)
T 1rqg_A 234 NWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI-GKD---NIPFHAIFWPA 309 (722)
T ss_dssp SSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEE-EGG---GHHHHHTHHHH
T ss_pred CCCEEECCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEE-CCC---CHHHHHCCCHH
T ss_conf 77539783357899859998434542100001345311498205667642136884237752-576---35442031369
Q ss_pred ----HH----------HCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCH
Q ss_conf ----51----------00000101455531101322122343-3024566629773779989985067666553011014
Q gi|255764513|r 234 ----FN----------FPIPEFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDM 298 (492)
Q Consensus 234 ----l~----------~~~p~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl 298 (492)
.| +.+|.-....-.++.+|+||||..|. +...++.+ .|-++|+.=||+..+- .+ ..--|+.
T Consensus 310 ~l~~~G~~~~~~~~~~~~~~~~v~~hg~l~~~G~KMSKS~GNvIdp~dli~-~ygaD~lR~~l~~~~~-~~--~d~df~~ 385 (722)
T 1rqg_A 310 FLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMP-ET--RDSDFSF 385 (722)
T ss_dssp HHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCC-SS--SCEEECH
T ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECCEEEECCCEEECCCCCCCCHHHHHH-HCCHHHHHHHHHHHCC-CC--CCCCHHH
T ss_conf 998737430022234567852898641896168541103787378899875-0582789999997088-87--7753027
Q ss_pred HHHHHHHH
Q ss_conf 67776520
Q gi|255764513|r 299 QQLIHHFD 306 (492)
Q Consensus 299 ~eli~~Fd 306 (492)
++++...+
T Consensus 386 ~~~~~~~n 393 (722)
T 1rqg_A 386 SDFKVRIN 393 (722)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 89999988
No 24
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica}
Probab=98.36 E-value=4.5e-05 Score=53.29 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=107.4
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCCCCCCHHHH---HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 05634843388785015999999999999718849999704----86663886799---999999886589888676558
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED----TDSKRSTLESE---NAVMQSLKWCGLNWDEGPDIG 79 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD----td~~R~~~~~~---~~i~~~l~wlgl~~De~~~~~ 79 (492)
|-|=|.|| |.|||||+-.+.+..-+-.+.|-..++=|=| |+..-+.++.. .....++--+|+++|-.
T Consensus 85 vytG~~PS--G~lHLGh~i~~~~~k~lQ~~~~~~v~I~iaD~~a~~~~~~~~ee~~~~~~e~~~~~lA~G~DpeKt---- 158 (386)
T 3hzr_A 85 IFIQKYPQ--KEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKT---- 158 (386)
T ss_dssp EEEEECCC--SSCBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGE----
T ss_pred EEECCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE----
T ss_conf 99486887--370898999999999999767975999974478724788999999999999999999958894722----
Q ss_pred CCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 87676323262899999999999889824514889997766887664310002366555788333001120257740788
Q gi|255764513|r 80 GAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRL 159 (492)
Q Consensus 80 g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~ 159 (492)
-.|+||+....|...+-.+-. ..+-.++.+ +..|
T Consensus 159 ---~i~~qs~~~~~~~~~~~~l~k-----------------------------------~~t~~~~k~--------~~~~ 192 (386)
T 3hzr_A 159 ---FIYTDYQYFGKMYRTISLVEK-----------------------------------ATAYNVVQP--------FFNF 192 (386)
T ss_dssp ---EEEEHHHHHHHHHHHHHHHHH-----------------------------------HCBHHHHTT--------TSCC
T ss_pred ---EEEEECHHCHHHHHHHHHHHC-----------------------------------CCCCCHHHH--------HHCC
T ss_conf ---899825200065899999958-----------------------------------735052546--------5167
Q ss_pred EECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH---------HHCCCCCCCHHHHHHHH
Q ss_conf 622431143047513402136432356410004532489867887644444443---------11223543024788999
Q gi|255764513|r 160 TVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITH---------VARGEEWISSVPKHILL 230 (492)
Q Consensus 160 k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ith---------viRg~d~~~~t~~q~~l 230 (492)
+|. .++ |.-+|-+--+.|=..+..+| |.=|.|...+--.-.-+
T Consensus 193 ----------~~~---------~n~---------g~~~YP~lQaaDil~~~~~~~~g~~~~~lVPvG~DQ~~~~~ltRdi 244 (386)
T 3hzr_A 193 ----------EYS---------DNI---------GKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQI 244 (386)
T ss_dssp ----------CSS---------SBH---------HHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHH
T ss_pred ----------CCC---------CCC---------CCCCCCHHHHHHHHHCCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf ----------666---------777---------5204609888888760680541787530305773459999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9985100000101455531101-3221223433024566629773779989985
Q gi|255764513|r 231 YQYFNFPIPEFIHLPLIKNPDK-SKLSKRRNPTSISYYSAMGYLPEALINFLAL 283 (492)
Q Consensus 231 ~~al~~~~p~f~H~pli~~~~g-~klSKR~~~~~i~~~~~~GylPeAilNyLal 283 (492)
..-+|+..|...|.+++.+-+| +|+||.+...+|- +- =.|+.+.+-+..
T Consensus 245 a~r~~~~~p~~i~~~~lpgL~G~~KMSsS~~~s~I~-L~---D~p~~I~kKI~k 294 (386)
T 3hzr_A 245 ATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSIL-LS---DNAKQVERKINK 294 (386)
T ss_dssp HHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCB-TT---CCHHHHHHHHHH
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE-EE---CCHHHHHHHHHE
T ss_conf 986356887021255445678876545689986257-50---798999887452
No 25
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.35 E-value=0.00023 Score=48.41 Aligned_cols=204 Identities=19% Similarity=0.259 Sum_probs=119.9
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-------CCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88770563484338878501599999999999971884999970486-------66388679999999988658988867
Q gi|255764513|r 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-------SKRSTLESENAVMQSLKWCGLNWDEG 75 (492)
Q Consensus 3 ~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd-------~~R~~~~~~~~i~~~l~wlgl~~De~ 75 (492)
..-.|-|=|-|| |.+||||.-.++.||.-=...|.+.++=|-|-- ......+.....+.++--+|++++..
T Consensus 11 ~~~ri~tG~~PT--G~lHlG~~i~~i~~~~~lq~~g~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~~~a~g~~p~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPT--GKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCC--SSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 445366561889--714588789999999999976994999972301014899999999999999999999826898734
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 65588767632326289999999999988982451488999776688766431000236655578833300112025774
Q gi|255764513|r 76 PDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKH 155 (492)
Q Consensus 76 ~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~ 155 (492)
. .+.||+..+... ....| .|+.+..++.....- .. .
T Consensus 89 ~-------i~~~s~~~~~~~-~~~~l-------~~~~~~~~~~~~~~~----------k~-------------------~ 124 (340)
T 2g36_A 89 V-------IFVQSGVKEHAE-LALLF-------SMIVSVSRLERVPTY----------KE-------------------I 124 (340)
T ss_dssp E-------EEEGGGCTHHHH-HHHHH-------HTTSCHHHHHTCHHH----------HT-------------------C
T ss_pred E-------EEEECHHHHHHH-HHHHH-------HHHHHHHHHHHHHHH----------HH-------------------H
T ss_conf 9-------997013667788-99999-------852015777753454----------21-------------------0
Q ss_pred EEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 07886224311430475134021364323564100045324898678876444444431122354302478899999851
Q gi|255764513|r 156 VVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFN 235 (492)
Q Consensus 156 ~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~ 235 (492)
.-|+.. .| ...+ |.-+|-+--+-|=..++.++|.=|+|-...--.-..+-..+|
T Consensus 125 ~~~~~~--------~~---------~~~~---------~~~~YP~lqaaDil~~~~~~v~~G~DQ~~~~~l~R~ia~k~n 178 (340)
T 2g36_A 125 KSELNY--------KD---------LSTA---------GFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN 178 (340)
T ss_dssp ---------------C---------CCSH---------HHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HCCCCC--------CC---------CCCC---------CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 000145--------77---------7653---------434475553102342257777663778999999999999876
Q ss_pred H--------CCCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 0--------00001014555311013221223433-0245666297737799899850
Q gi|255764513|r 236 F--------PIPEFIHLPLIKNPDKSKLSKRRNPT-SISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 236 ~--------~~p~f~H~pli~~~~g~klSKR~~~~-~i~~~~~~GylPeAilNyLalL 284 (492)
+ +.|...++|++.+.+|+|+||-.+.. .+. -.|+.+.+=+...
T Consensus 179 ~~~~~~~~~p~~~~~~~~~l~~~~g~KmSkS~~~~I~l~------D~~~~i~kKI~ka 230 (340)
T 2g36_A 179 YLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLE------ISEKELEQTILRM 230 (340)
T ss_dssp HHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTT------CCHHHHHHHHHTC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC------CCHHHHHHHHHEE
T ss_conf 520334678631012356789999997888745555202------7657887765510
No 26
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.31 E-value=8.5e-06 Score=58.20 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=115.1
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----CCCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5634843388785015999999999999718849999704-----8666--38867999999998865898886765588
Q gi|255764513|r 8 RVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED-----TDSK--RSTLESENAVMQSLKWCGLNWDEGPDIGG 80 (492)
Q Consensus 8 ~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD-----td~~--R~~~~~~~~i~~~l~wlgl~~De~~~~~g 80 (492)
-+=|. |||.|||||.- ++.+|....+.|...++=|-| +|.. .......+....++.-+|++.+..
T Consensus 36 y~G~~--PTg~lHLGh~v-~~~~~~~lq~~G~~~~~~i~D~~a~~~~~~~~~~~~~~~~~~~~~~~A~G~d~~k~----- 107 (323)
T 2cyb_A 36 YVGYE--PSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRA----- 107 (323)
T ss_dssp EEEEC--CCSCCBHHHHH-HHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTC-----
T ss_pred EEEEC--CCCCCHHHHHH-HHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-----
T ss_conf 98269--99846799999-99999999977990899934388763475759999989999999998538995555-----
Q ss_pred CCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 76763232628999999999998898245148899977668876643100023665557883330011202577407886
Q gi|255764513|r 81 AYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLT 160 (492)
Q Consensus 81 ~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k 160 (492)
..|.||+-... .+++..|. |.++.-++...+.
T Consensus 108 --~i~~~S~~~~~-~~~~~~l~-------~~~~~~~l~~~~~-------------------------------------- 139 (323)
T 2cyb_A 108 --KFVLGSEYQLS-RDYVLDVL-------KMARITTLNRARR-------------------------------------- 139 (323)
T ss_dssp --EEEEGGGTTTS-HHHHHHHH-------HHHHHSBHHHHHH--------------------------------------
T ss_pred --EEEECCHHHHH-HHHHHHHH-------HHCCCCHHHHHHH--------------------------------------
T ss_conf --56876466667-89999998-------6534543888888--------------------------------------
Q ss_pred ECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 22431143047513402136432356410004532489867887644444443112235430247889999985100000
Q gi|255764513|r 161 VPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240 (492)
Q Consensus 161 ~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~ 240 (492)
+.|.+... . ++.. =|..+|-+--+.|=..++.++|+-|.|-..+--.-..+..-+|++.|.
T Consensus 140 --------~~~~~~~~-~------~~~~----~~~~~YP~lQa~D~~~~~~~~~~~G~DQ~~~~~l~r~~~~r~~~~~~~ 200 (323)
T 2cyb_A 140 --------SMDEVSRR-K------EDPM----VSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPV 200 (323)
T ss_dssp --------HTTTTCSC-S------SSCB----THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCE
T ss_pred --------HHHHHHCC-C------CCCC----CCEECCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf --------75332102-4------6777----320025632245676325544650320567889999999970787504
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 1014555311013221223433-0245666297737799899850
Q gi|255764513|r 241 FIHLPLIKNPDKSKLSKRRNPT-SISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 241 f~H~pli~~~~g~klSKR~~~~-~i~~~~~~GylPeAilNyLalL 284 (492)
..|.|+|.+.+|+|+||-.+.. .+.+ .|+.|.+-+...
T Consensus 201 ~l~~p~l~~ldG~KmskS~~n~I~L~D------~pe~i~kKI~~a 239 (323)
T 2cyb_A 201 CLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp EEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCC------CHHHHHHHHEEE
T ss_conf 761685237788635789988644237------858998866152
No 27
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.30 E-value=0.00022 Score=48.60 Aligned_cols=201 Identities=18% Similarity=0.202 Sum_probs=113.0
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7056348433887850159999999999997188499997048-------666388679999999988658988867655
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDT-------DSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDt-------d~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.|-|=|. |||.+||||.-.|+.+|..- |.+|..++=|=|. |......+.....+.++--+|++++...
T Consensus 24 rv~tG~~--PSG~~HlG~~l~~~~~~~~l-Q~~~~~~i~IaD~ha~t~~~~~~~~~r~~~~~~~~~~lA~G~Dp~k~~-- 98 (351)
T 1yi8_B 24 RVLTGDR--PTGALHLGHLAGSLQNRVRL-QDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT-- 98 (351)
T ss_dssp EEEEEEC--CSSCCBHHHHHHTHHHHHHH-TSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE--
T ss_pred EEEECCC--CCCCCHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE--
T ss_conf 8996638--89726268789999999998-757988999815367616999999999999999999998069931043--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
.|+||+-.+.+.-.... -|.++--++...... ... .. ....
T Consensus 99 -----i~~qS~~~~~~el~~~~--------~~~~~~~~l~~~~~~--~~~----------------~~-~~~~------- 139 (351)
T 1yi8_B 99 -----CVVQSAVPELAELTVYF--------LNLVTVSHLRQNPTV--KAE----------------IA-QKGY------- 139 (351)
T ss_dssp -----EEEGGGCTHHHHHHHHH--------HTTSBHHHHHTCHHH--HHH----------------HH-HHTC-------
T ss_pred -----EEECCCHHHHHHHHHHH--------HHHHHHHHHHHHHHH--HHH----------------HC-CCCC-------
T ss_conf -----77355113578899999--------876445258887899--986----------------30-2366-------
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf 862243114304751340213643235641000453248986788764444444311223543024788999998510--
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF-- 236 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~-- 236 (492)
.+ -+ +=|..+|-.--+-|=...+.++|.=|+|-...--.-..|.+.+|+
T Consensus 140 -----------~~---------------~~---~~g~~~YP~lQaaDi~~~~~divpvG~DQ~~h~~LaRdia~~~n~~~ 190 (351)
T 1yi8_B 140 -----------GE---------------RV---PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALY 190 (351)
T ss_dssp -----------TT---------------CC---BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred -----------CC---------------CC---CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf -----------66---------------77---73445550876514654055446776237999999999999954004
Q ss_pred ------CCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf ------0000101455531101-32212234330245666297737799899850
Q gi|255764513|r 237 ------PIPEFIHLPLIKNPDK-SKLSKRRNPTSISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 237 ------~~p~f~H~pli~~~~g-~klSKR~~~~~i~~~~~~GylPeAilNyLalL 284 (492)
+.|...|++.+.+.+| +|+||..+.. |. +-+ .|+.|..=+...
T Consensus 191 ~~~~~~P~~~~~~~~~l~gL~g~~KmSkS~~~~-I~-l~D---~~~~I~kKI~ka 240 (351)
T 1yi8_B 191 APVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNA-IA-LGD---SADEVARKVMGM 240 (351)
T ss_dssp CSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCC-CB-TTC---CHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCC-CC-CCC---CHHHHHHHHHHC
T ss_conf 776678667764134565777501103685334-67-789---999999998712
No 28
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Probab=98.26 E-value=0.00011 Score=50.58 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=118.8
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-----CC-CCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77056348433887850159999999999997188499997048-----66-6388679999999988658988867655
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDT-----DS-KRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDt-----d~-~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.+|.|=|.| ||.+||||.-.++-+|... |.++..++=|=|- |+ .............++.-+|++++-..
T Consensus 4 ~rv~tG~~P--SG~~HlG~~lg~i~~~~~l-Q~~~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~~a~G~dp~k~~-- 78 (322)
T 3m5w_A 4 MRVLTGLQP--SGDLHIGNYFGAIKQMVDA-QEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSV-- 78 (322)
T ss_dssp CCBEEEECC--SSCCBHHHHHHTHHHHHHT-TTTSCCEEEECTTTHHHHCCCHHHHHHHHHHHHHHHHHTTCCTTTSE--
T ss_pred CEEEECCCC--CCCCHHHHHHHHHHHHHHH-HCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE--
T ss_conf 626765078--9705478789999999998-71698899993141611697999999999999999998289998579--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
.|.||+-.+.. +.+- .+-|.++-.++.....
T Consensus 79 -----i~~qs~~~~~~-~l~~-------~l~~~~~~~~l~~~~~------------------------------------ 109 (322)
T 3m5w_A 79 -----FWLQSDVKEVM-ELYW-------ILSQFTPMGLLERAHS------------------------------------ 109 (322)
T ss_dssp -----EEEGGGCTHHH-HHHH-------HHHHTCBHHHHHTCHH------------------------------------
T ss_pred -----EEECCCCHHHH-HHHH-------HHHHHHHHHHHHHHHH------------------------------------
T ss_conf -----99888505678-9999-------9988611489876333------------------------------------
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 86224311430475134021364323564100045324898678876444444431122354302478899999851000
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPI 238 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~ 238 (492)
| .+..... .+. +-|..+|-.--+.|=..++.++|.=|.|-...--.-.-+-..||...
T Consensus 110 ~----------~~~~~~~---~~~---------~~~~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~ltRdia~k~n~~~ 167 (322)
T 3m5w_A 110 Y----------KDKVAKG---LSA---------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW 167 (322)
T ss_dssp H----------HC----------C---------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHCCC---CCC---------CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 1----------1110344---676---------50401777777445676278622226551899999999999987553
Q ss_pred CHH---------HHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 001---------014555311013221223433024566629773779989985067
Q gi|255764513|r 239 PEF---------IHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFV 286 (492)
Q Consensus 239 p~f---------~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGw 286 (492)
+.+ .+.+++++.+|+|+||-++. +|. +-+ .|+.|..=+...-.
T Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~KMSkS~~n-~I~-l~D---~~~~I~kKI~ka~t 219 (322)
T 3m5w_A 168 GEIFTLPEARVNEEVAVVVGTDGAKMSKSYQN-TID-IFS---SEKTLKKQISSIVT 219 (322)
T ss_dssp SSCSCCCEEEC----CCCBCTTSSBCCGGGTC-CCB-SSS---CHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCC---CHHHHHHHHHCCCC
T ss_conf 76544320013432000368999867778887-553-556---88899886650447
No 29
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.5e-05 Score=55.03 Aligned_cols=205 Identities=14% Similarity=0.149 Sum_probs=113.4
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----C-CCCC------CCHHH-HHHHHHHHHHCCCCCC
Q ss_conf 705634843388785015999999999999718849999704----8-6663------88679-9999999886589888
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED----T-DSKR------STLES-ENAVMQSLKWCGLNWD 73 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD----t-d~~R------~~~~~-~~~i~~~l~wlgl~~D 73 (492)
+.|+=..=.|||.|||||.-.++.+|.+-+ .|...++=|-| | |... ....+ ...|...+.-+|++.+
T Consensus 39 ~~~iytG~~PTG~lHlGh~v~~ik~~~~~~-~g~~~~i~IaD~~a~~~~~~~~~e~i~~~~~~~~~~i~~il~a~g~d~~ 117 (394)
T 2dlc_X 39 HLKLYWGTAPTGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp CCEEEEEECCCSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 977998269886247999999999999997-8990899971615311799998899999999999999999986289955
Q ss_pred CCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 67655887676323262899999999999889824514889997766887664310002366555788333001120257
Q gi|255764513|r 74 EGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQK 153 (492)
Q Consensus 74 e~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~ 153 (492)
-. .-++||+- ....+++..|. |.++ ..+.....+ .+
T Consensus 118 k~-------~~~~~S~~-~~~~~~~~~l~-------~l~~-------------------------~~~~~~~~~---~~- 153 (394)
T 2dlc_X 118 KL-------KFVVGSSY-QLTPDYTMDIF-------RLSN-------------------------IVSQNDAKR---AG- 153 (394)
T ss_dssp TC-------EEEETHHH-HTSHHHHHHHH-------HHHT-------------------------TSCHHHHHH---HT-
T ss_pred CE-------EEEECCCH-HHHHHHHHHHH-------HHHH-------------------------HHHHHHHHH---HH-
T ss_conf 25-------99988834-54145899999-------9977-------------------------979999998---88-
Q ss_pred CCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 74078862243114304751340213643235641000453248986788764444444311223543024788999998
Q gi|255764513|r 154 KHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQY 233 (492)
Q Consensus 154 ~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~a 233 (492)
.+.. +. . .+..+ |..+|-+--+.|-...++++|+=|.|-..+--.-..+.+-
T Consensus 154 ----------------~~~~-~~-~-~~~~~---------~~~~YP~lQaaDil~~~ad~v~~G~DQ~~~~~l~Rd~a~~ 205 (394)
T 2dlc_X 154 ----------------ADVV-KQ-V-ANPLL---------SGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPS 205 (394)
T ss_dssp ----------------TTTS-CC-C-SSCCT---------HHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGG
T ss_pred ----------------HHHH-CC-C-CCCCH---------HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf ----------------8874-24-5-79727---------8886457764123433687872421158899999999997
Q ss_pred HHHCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 510000010145553110-132212234330245666297737799899850676
Q gi|255764513|r 234 FNFPIPEFIHLPLIKNPD-KSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVH 287 (492)
Q Consensus 234 l~~~~p~f~H~pli~~~~-g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws 287 (492)
||+..|.-.|+|+|.+-+ |+|+||.++...|. +-+ .|+-|.+=+..--..
T Consensus 206 ~~~~~~~~l~~p~l~gL~g~~KMSkS~~ns~I~-l~D---~p~~i~kKI~ka~td 256 (394)
T 2dlc_X 206 LGYKKRAHLMNPMVPGLAQGGKMSASDPNSKID-LLE---EPKQVKKKINSAFCS 256 (394)
T ss_dssp GTCCCCEEEEECCCCCCC----------CCSCB-TTC---CHHHHHHHHHHSCCC
T ss_pred HCCCCCEEEECCCEECCCCCCCCCCCCCCCEEE-EEC---CHHHHHHHHHHCCCC
T ss_conf 278996599616403799887778889998797-526---999999999812479
No 30
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.19 E-value=1e-05 Score=57.70 Aligned_cols=176 Identities=16% Similarity=0.119 Sum_probs=100.2
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------CCCC---HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 705634843388785015999999999999718849999704866------6388---6799999999886589888676
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDS------KRST---LESENAVMQSLKWCGLNWDEGP 76 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~------~R~~---~~~~~~i~~~l~wlgl~~De~~ 76 (492)
+.++=..=.|||.+||||+-.++.+|.+ .+.|..+++=|=|... .++. ....+.+...+.-+|++.+-.
T Consensus 35 ~~~vytGi~PTG~lHLGh~~~~~~~~~l-q~~g~~~~~~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~- 112 (364)
T 2cya_A 35 RIKGYIGYEPSGVAHIGWLVWMYKVKDL-VEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV- 112 (364)
T ss_dssp CCEEEEEECCCSSCBTHHHHHHHHHHHH-HHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHE-
T ss_conf 9779976488972438999999999999-87899539998448777558777618899875999998898608971314-
Q ss_pred CCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 55887676323262899999999999889824514889997766887664310002366555788333001120257740
Q gi|255764513|r 77 DIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHV 156 (492)
Q Consensus 77 ~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~ 156 (492)
.++|+.......++...+..-+ +..+-.++ .. -..+.
T Consensus 113 -------~~~~~s~~~~~~~~~~~~~~l~----~~~~l~~~----------------------------~~----~~~~~ 149 (364)
T 2cya_A 113 -------RFVDAEELASDKDYWGLVIRVA----KRASLARV----------------------------RR----ALTIM 149 (364)
T ss_dssp -------EEEEHHHHHTCHHHHHHHHHHH----HTSCHHHH----------------------------HT----TC---
T ss_pred -------EEECCHHHHHHHHHHHHHHHHH----HCCCCCCC----------------------------HH----HHHHH
T ss_conf -------5303317652378999999985----32343320----------------------------04----67787
Q ss_pred EEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78862243114304751340213643235641000453248986788764444444311223543024788999998510
Q gi|255764513|r 157 VRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236 (492)
Q Consensus 157 iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~ 236 (492)
-|... + +.+ +=|..+|-+--+.|=...+.++|+=|+|-..+--....+.+-+|+
T Consensus 150 ~r~~~--~---------------------~~~---~~g~~~YP~LQaaDil~~~ad~vpvG~DQ~~hl~l~Rdia~k~n~ 203 (364)
T 2cya_A 150 GRRAE--E---------------------AEV---DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203 (364)
T ss_dssp ---CC--G---------------------GGS---CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC
T ss_pred HHHHC--C---------------------CCC---CCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 66512--7---------------------886---664220243115667766430235666788999999999998379
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 0000101455531101
Q gi|255764513|r 237 PIPEFIHLPLIKNPDK 252 (492)
Q Consensus 237 ~~p~f~H~pli~~~~g 252 (492)
..|...|+|++.+.+|
T Consensus 204 ~~~~~l~~p~~~~l~g 219 (364)
T 2cya_A 204 KKPVAIHTPIISSLQG 219 (364)
T ss_dssp CCCEEEEECCCBCSSC
T ss_pred CCCEEEECCCCCCCCC
T ss_conf 8870221576556776
No 31
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8}
Probab=98.18 E-value=0.00049 Score=46.24 Aligned_cols=199 Identities=20% Similarity=0.203 Sum_probs=117.6
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEECC----CC-CCCCCHHHHH---HHHHHHHHCCCCCCCC
Q ss_conf 770563484338878501599999999999-9718849999704----86-6638867999---9999988658988867
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIA-KRTGGKFILRIED----TD-SKRSTLESEN---AVMQSLKWCGLNWDEG 75 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a-~~~~g~f~lRieD----td-~~R~~~~~~~---~i~~~l~wlgl~~De~ 75 (492)
..|.|=|-| ||.+||||.-.++.+|+.- .+.|.++++=|=| |+ .....++-.+ ..+.++--+|++++..
T Consensus 2 ~ri~tG~~P--SG~~HlGh~l~~i~~~~~lq~~~g~~~~~~IaD~ha~~~~~~~d~~~~~~~~~~~~~~~~a~g~dp~~~ 79 (337)
T 2el7_A 2 KRVLSGIQP--SGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKV 79 (337)
T ss_dssp CCEEEEECS--CSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CEEEECCCC--CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 856778388--985728877999999999999749909999833201328999998999997999999999844786434
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 65588767632326289999999999988982451488999776688766431000236655578833300112025774
Q gi|255764513|r 76 PDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKH 155 (492)
Q Consensus 76 ~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~ 155 (492)
. .++||+-.+. .+..- -|.|.++-.++...... ..+...+
T Consensus 80 ~-------i~~qs~~~~~-~el~~-------~~~~~~~~~~l~r~~~~----------------------k~~~~~~--- 119 (337)
T 2el7_A 80 T-------LFVQSHVPEH-TELSW-------VFTTLTPLGDLTRMTQF----------------------KDKASKQ--- 119 (337)
T ss_dssp E-------EEEGGGSTHH-HHHHH-------HHHHTSBHHHHHTSHHH----------------------HHHTTSS---
T ss_pred E-------EEEHHHHHHH-HHHHH-------HHHHHHHHHHHHHHHHH----------------------HHHHCCC---
T ss_conf 9-------9744545888-99999-------99846149999977765----------------------4441247---
Q ss_pred EEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 07886224311430475134021364323564100045324898678876444444431122354302478899999851
Q gi|255764513|r 156 VVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFN 235 (492)
Q Consensus 156 ~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~ 235 (492)
++. +=|.-+|-.-=+-|-...+.++|.=|+|-...--....+..-+|
T Consensus 120 ------------------------~~~---------~~g~~~YP~lQaaDil~~~~d~vpvG~DQ~~~~~l~Rdia~k~n 166 (337)
T 2el7_A 120 ------------------------ETV---------WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFN 166 (337)
T ss_dssp ------------------------SCC---------BHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHH
T ss_pred ------------------------CCC---------CCCCCCCHHHHCCCHHHHCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf ------------------------787---------60110233876247054249862337116899997389999999
Q ss_pred HCCCHHH---------HHHHHHHHHC-CCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 0000010---------1455531101-3221223433-0245666297737799899850
Q gi|255764513|r 236 FPIPEFI---------HLPLIKNPDK-SKLSKRRNPT-SISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 236 ~~~p~f~---------H~pli~~~~g-~klSKR~~~~-~i~~~~~~GylPeAilNyLalL 284 (492)
...+.+. +.+.+.+.+| +|+||..++. .+. =.|+.+.+-+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~gl~g~~kmSks~~~~I~l~------D~~~~i~kKI~ka 220 (337)
T 2el7_A 167 HLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLL------EPEESIWQKIQHL 220 (337)
T ss_dssp HHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSS------SCHHHHHHHHHTC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCHHHHHHHHCC
T ss_conf 87242568762000222220327787542257777753013------7805664243107
No 32
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.10 E-value=1.8e-06 Score=62.76 Aligned_cols=178 Identities=8% Similarity=-0.027 Sum_probs=90.2
Q ss_pred EEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-
Q ss_conf 1430475134021364323564100045324898678876444444431122354302478899999851000001014-
Q gi|255764513|r 166 SCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL- 244 (492)
Q Consensus 166 ~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~- 244 (492)
...+.|...+...+.... +|....-..+.|+|+++.+||||.||++||+||.+|+++++.+..++...-.....+.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~v~~~~~g~dh~~~~~~~~~~~~~~~~~~~~~~p~~~h~~~l~ 272 (523)
T 1irx_A 194 KVKYKCPEGHEGWVDIRS-GNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVG 272 (523)
T ss_dssp CEEECCSSSCCCEECTTS-SCEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEE
T ss_pred EEEEEECCCCCCCEEEEC-CCCCEEEECCCCHHHCCCCCEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEE
T ss_conf 379986688732046406-9873555326202112787368757121037840678889999860688886578983576
Q ss_pred -HH----HHHHHCCCCCCC--C---CCCCHHHHH------------HCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf -55----531101322122--3---433024566------------6297737799899850676665530110146777
Q gi|255764513|r 245 -PL----IKNPDKSKLSKR--R---NPTSISYYS------------AMGYLPEALINFLALLFVHKSEDDDELMDMQQLI 302 (492)
Q Consensus 245 -pl----i~~~~g~klSKR--~---~~~~i~~~~------------~~GylPeAilNyLalLGws~~~~d~Eifsl~eli 302 (492)
.. +-...|.-.+-+ . ++..+..|. .....+.++-+|..+..+..+. +...++..++.
T Consensus 273 ~~~~~~KmSKr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~ 351 (523)
T 1irx_A 273 IKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIYFGV-EGGKGDDEELR 351 (523)
T ss_dssp ESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEECCSTTHHHHHHHHHHHHHHHTTS-CC-----CHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
T ss_conf 17755456666666214999987079999899873788765655021014677777788774023461-05555457888
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHH-HHHHHCCCCHHHHHHHHHHH
Q ss_conf 652021137554420156556643-55551269989999864442
Q gi|255764513|r 303 HHFDLHHLSKAGAVFDKQKLDWLN-GRWIREKLSTTEFLSRVSQW 346 (492)
Q Consensus 303 ~~FdL~~I~Ks~A~FD~eKL~wlN-~qyIr~~l~~~el~~~l~~~ 346 (492)
.....................++. ...+.+ ....+....+...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~ 395 (523)
T 1irx_A 352 RTYELSMPKKPERLVAQAPFRFLAVLVQLPH-LTEEDIINVLIKQ 395 (523)
T ss_dssp HHHHHHCSSCCCCCCCCCCHHHHHHHTTCTT-CCHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHCCCHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 8876631357345542044899987776524-7858999988663
No 33
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=98.05 E-value=0.00011 Score=50.52 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=107.5
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCCHH---HHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 05634843388785015999999999999718849999704866-----638867---9999999988658988867655
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDS-----KRSTLE---SENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~-----~R~~~~---~~~~i~~~l~wlgl~~De~~~~ 78 (492)
|-|=|.| ||.|||||+-++++++-+-.+.|..+++=|-|+.. ..+.++ .....+.++--+|++++...
T Consensus 76 vytG~~P--SG~lHLGh~i~~~~~~~~q~~~~~~~~i~iaD~~~~~~~~~~~~~~~~~~~~e~~~~~lA~GlDp~kt~-- 151 (392)
T 3jxe_A 76 LYTGRGP--SGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF-- 151 (392)
T ss_dssp EEEEECC--SSCCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE--
T ss_pred EEECCCC--CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE--
T ss_conf 9968689--837489989999999999971698669999612776525799999999999999999998089920359--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
.|.||+....|.-+ -.| -|.++-.++.. .. .
T Consensus 152 -----i~~~s~~~~~~~l~-~~l-------~~~~~~~~~~~----------------------------~~--------~ 182 (392)
T 3jxe_A 152 -----IFQNSEFTKIYEMA-IPI-------AKKINFSMAKA----------------------------VF--------G 182 (392)
T ss_dssp -----EEETTTSTHHHHHH-HHH-------HHHSBHHHHHH----------------------------HH--------C
T ss_pred -----EEECCCCHHHHHHH-HHH-------HHHCCHHHHHH----------------------------CC--------C
T ss_conf -----99713115778887-889-------85155166653----------------------------11--------2
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 86224311430475134021364323564100045324898678876444444-43112235430247889999985100
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKI-THVARGEEWISSVPKHILLYQYFNFP 237 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~i-thviRg~d~~~~t~~q~~l~~al~~~ 237 (492)
|+ +. ..+ |..+|-..-+.|-..... ++|-=|.|-..+--.-..|...+|+.
T Consensus 183 ~~----------~~---------~~~---------g~~~YP~lQaaDil~~~~~~~VPvG~DQ~~h~~LtRdia~r~n~~ 234 (392)
T 3jxe_A 183 FT----------EQ---------SKI---------GMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYY 234 (392)
T ss_dssp CC----------TT---------SBH---------HHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSC
T ss_pred CC----------CC---------CCC---------CCCCCCHHHHCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 44----------45---------565---------544670333232011356706324477789999999999752788
Q ss_pred CCHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 000101455531101--3221223433024566629773779989985
Q gi|255764513|r 238 IPEFIHLPLIKNPDK--SKLSKRRNPTSISYYSAMGYLPEALINFLAL 283 (492)
Q Consensus 238 ~p~f~H~pli~~~~g--~klSKR~~~~~i~~~~~~GylPeAilNyLal 283 (492)
.|.-.|.|++.+..| .|+|+.+....|.-. -.|+.+.+=+..
T Consensus 235 ~~~~~~~~~ip~l~G~~gKmssS~~~s~I~L~----D~pe~i~~KI~k 278 (392)
T 3jxe_A 235 KTAALHSKFVPSLTSLSGKMSASKPETAIYLT----DSPEDVEKKVWK 278 (392)
T ss_dssp CCEEEEECCCCCSSCSSSCCCTTSGGGCCBTT----CCHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC----CCHHHHHHHHHH
T ss_conf 87334543233568876666546788874505----899999999974
No 34
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=97.99 E-value=2.2e-05 Score=55.43 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=50.4
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-C----CCCCC---CHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 5634843388785015999999999999718849999704-8----66638---86799999999886589888676558
Q gi|255764513|r 8 RVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED-T----DSKRS---TLESENAVMQSLKWCGLNWDEGPDIG 79 (492)
Q Consensus 8 ~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD-t----d~~R~---~~~~~~~i~~~l~wlgl~~De~~~~~ 79 (492)
-|=|.|| ||.+||||.-.++++|-+-.+.|..+++=|=| . +..-+ ........+.++--+|++++...
T Consensus 95 ~tG~~Ps-SG~~HLGh~~~~~~~~~lQd~~~~~~~i~iaD~ea~~~~~~~~~e~~~~~~~e~~~~~iA~G~Dp~kt~--- 170 (451)
T 3foc_A 95 YTGRGPS-SGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTF--- 170 (451)
T ss_dssp EEEECCC-SSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEE---
T ss_pred EECCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE---
T ss_conf 9798899-897539999999999999875799789997247884048899999999999999999999577902339---
Q ss_pred CCCCCEECCCCHH
Q ss_conf 8767632326289
Q gi|255764513|r 80 GAYGPYRQSERKN 92 (492)
Q Consensus 80 g~~~p~~QS~r~~ 92 (492)
.|+||+..+
T Consensus 171 ----if~qS~~~~ 179 (451)
T 3foc_A 171 ----IFINSQYLS 179 (451)
T ss_dssp ----EEEHHHHTT
T ss_pred ----EEEECCCHH
T ss_conf ----999160031
No 35
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYB; 2.2A {Acanthamoeba polyphaga mimivirus}
Probab=97.89 E-value=0.00014 Score=49.87 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=106.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------CCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 843388785015999999999999718849999704866------638---86799999999886589888676558876
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDS------KRS---TLESENAVMQSLKWCGLNWDEGPDIGGAY 82 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~------~R~---~~~~~~~i~~~l~wlgl~~De~~~~~g~~ 82 (492)
.=-|||.|||||.-.++.+|..-.+.|.+.++=|=|-.. ..+ .......+..++.-+|++.+..
T Consensus 46 G~~PTG~lHLG~~l~~i~~~~~~q~~g~~~~iliaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~------- 118 (348)
T 2j5b_A 46 GFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT------- 118 (348)
T ss_dssp EECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE-------
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE-------
T ss_conf 5588875551768999999999986699769998570998688757659999999999999999808995530-------
Q ss_pred CCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 76323262899999999999889824514889997766887664310002366555788333001120257740788622
Q gi|255764513|r 83 GPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVP 162 (492)
Q Consensus 83 ~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p 162 (492)
..++||+.......+.+.+..- -|+++-.++..... +.+...
T Consensus 119 ~~~~qs~~~~~~~~~~~l~~~l----s~~~~~~~l~~~~~---------------------------------~~~~~~- 160 (348)
T 2j5b_A 119 RFIWASEFIASNPSYIERMLDI----AEFSTISRVKRCCQ---------------------------------IMGRNE- 160 (348)
T ss_dssp EEEEHHHHHHHCHHHHHHHHHH----HHHHHHHHHTC-------------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHHHH----HCCCCCCHHHHHHH---------------------------------HHHHHH-
T ss_conf 8996478765202489999998----44326432430588---------------------------------986531-
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 43114304751340213643235641000453248986788764444444311223543024788999998510000010
Q gi|255764513|r 163 NQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242 (492)
Q Consensus 163 ~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~ 242 (492)
.+ . ..++.+. +|..+-|-..-=..-+...+.=|+|=-...-.=..++..++++.|...
T Consensus 161 ~~-~---------------~~~~~~~------YPllqAaDil~l~~~~~d~~~~g~dqr~~~~~~r~~~~~~~~~~~~~~ 218 (348)
T 2j5b_A 161 SD-C---------------LKASQIF------YPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPISL 218 (348)
T ss_dssp ------------------------CC------HHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CC-C---------------CCCCEEC------CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 26-7---------------7632003------315666677740344455420178779999999864021056753011
Q ss_pred HHHHHHHHH--CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 145553110--1322122343302456662977377998998506766
Q gi|255764513|r 243 HLPLIKNPD--KSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHK 288 (492)
Q Consensus 243 H~pli~~~~--g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~ 288 (492)
+.|.+.+.. |+|+||.+....|.-. =.|+-+.+.+...=+.+
T Consensus 219 ~~~~~~~L~~~~~kmsss~~~~~I~l~----D~~~~i~~KI~ka~td~ 262 (348)
T 2j5b_A 219 SHHMLMSLSGPKKKMSKSDPQGAIFMD----DTEQEVSEKISRAYCTD 262 (348)
T ss_dssp EBCCCCCTTCSSCCCSTTCGGGSCBTT----CCHHHHHHHHHHSCCCS
T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEE----CCHHHHHHHHHEEECCC
T ss_conf 022223568743344567887555510----58678998775033788
No 36
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis}
Probab=97.80 E-value=0.00063 Score=45.48 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=115.7
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCCCCCCH---HHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 05634843388785015999999999999718849999704----86663886---799999999886589888676558
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED----TDSKRSTL---ESENAVMQSLKWCGLNWDEGPDIG 79 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD----td~~R~~~---~~~~~i~~~l~wlgl~~De~~~~~ 79 (492)
|-|=+.| ||.+||||.-+|+-+|+.- |.|...++=|=| |+.. ..+ +.....+.++--+|++++...
T Consensus 18 v~tG~~P--SG~~HlG~~~g~i~~~~~l-q~~~~~~~~iAD~halt~~~-~~~~~~~~~~e~~~~~lA~G~dp~k~~--- 90 (346)
T 3n9i_A 18 VFSGAQP--SGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQ-DPALLRKRTLDTLALYLACGIDPKKST--- 90 (346)
T ss_dssp EEEEECS--CSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCC-CHHHHHHHHHHHHHHHHHHTCCTTTSE---
T ss_pred EEECCCC--CCCCHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCCHHHCE---
T ss_conf 8966588--8725588879999999998-67898799997788855799-999999999999999998688844518---
Q ss_pred CCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 87676323262899999999999889824514889997766887664310002366555788333001120257740788
Q gi|255764513|r 80 GAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRL 159 (492)
Q Consensus 80 g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~ 159 (492)
.|+||+-.+.+ +++- ...|+|+-.++......
T Consensus 91 ----i~~qS~~~~~~-el~~-------~l~~~~~~~~l~r~~~~------------------------------------ 122 (346)
T 3n9i_A 91 ----IFVQSHVPEHS-QLSW-------ALNCYTYFGELSRMTQF------------------------------------ 122 (346)
T ss_dssp ----EEEGGGCTHHH-HHHH-------HHHTTSBHHHHHTCHHH------------------------------------
T ss_pred ----EEECCCCHHHH-HHHH-------HHHHHHHHHHHHHHHHH------------------------------------
T ss_conf ----99776545699-9999-------99501377788754333------------------------------------
Q ss_pred EECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 62243114304751340213643235641000453248986788764444444311223543024788999998510000
Q gi|255764513|r 160 TVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239 (492)
Q Consensus 160 k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p 239 (492)
.|.+... ..+..+ |.-+|=.--+.|=...+.++|.=|+|-..---.-..|..-||+.-.
T Consensus 123 ----------k~~~~~~--~~~~~~---------g~~~YP~lqaaDIl~~~~~~vpvG~DQ~~h~eltRdia~kfn~~y~ 181 (346)
T 3n9i_A 123 ----------KDKSARY--AENINA---------GLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYG 181 (346)
T ss_dssp ----------HHHHHHS--GGGCBH---------HHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHCCC--CCCCCC---------CCCCCCHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----------2010012--346772---------0256856651331310887345637569999999999999886558
Q ss_pred HHHHHH---------HHHHH--HCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 010145---------55311--0132212234330245666297737799899850676
Q gi|255764513|r 240 EFIHLP---------LIKNP--DKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVH 287 (492)
Q Consensus 240 ~f~H~p---------li~~~--~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws 287 (492)
.+.+.| .+.+- .++|+||-+++.. .....--.|+.+..-+..--..
T Consensus 182 ~~~~~P~~~~~~~~~~~~~l~~~~~kmskSs~s~~--n~I~l~d~~~~I~kKI~ka~Td 238 (346)
T 3n9i_A 182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRN--NVIELLEDPKSVVKKIKRAMTD 238 (346)
T ss_dssp SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGG--GCCBTTSCHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC--EEEEECCCHHHHHHHHHEEECC
T ss_conf 83256765657554440157886555665545664--2788367877888876520157
No 37
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.74 E-value=0.00026 Score=48.11 Aligned_cols=90 Identities=22% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCC---------C-----------------------CCHHH
Q ss_conf 843388785015999999999999--7188499997048666---------3-----------------------88679
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTDSK---------R-----------------------STLES 57 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd~~---------R-----------------------~~~~~ 57 (492)
-|.+||.||+||+||....-.+|| +..|.=+|..=-+|.. | -+.++
T Consensus 42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~vl~~~G~D~~Glpie~~~ek~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 121 (862)
T 1gax_A 42 PPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121 (862)
T ss_dssp CCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 98988861231788899999999999807998899982367777999999998876399937669999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHH----HHHHHHHCCCEEEC
Q ss_conf 999999988658988867655887676323262899999----99999988982451
Q gi|255764513|r 58 ENAVMQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQP----YVQNLLEKKLAFRC 110 (492)
Q Consensus 58 ~~~i~~~l~wlgl~~De~~~~~g~~~p~~QS~r~~~y~~----~~~~L~~~g~aY~c 110 (492)
...+.++|+-+|+..|=. -.|+-++ +.|.+ ...+|.++|++|+-
T Consensus 122 ~~~~~~~~~~lG~s~Dw~-------r~~~T~d--~~~~~~v~~~F~~L~~~Gliy~~ 169 (862)
T 1gax_A 122 GGTILKQLKRLGASADWS-------REAFTMD--EKRSRAVRYAFSRYYHEGLAYRA 169 (862)
T ss_dssp HHHHHHHHHHTTCCCCGG-------GCEETTS--HHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHCCCCCCC-------CCEECCC--HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999839615168-------9817689--89999999999999987997873
No 38
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Probab=97.65 E-value=0.00051 Score=46.13 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=106.6
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 33887-85015999999999999718849999704866-----6388---679999999988658988867655887676
Q gi|255764513|r 14 SPTGE-PHIGTAYTALFNYLIAKRTGGKFILRIEDTDS-----KRST---LESENAVMQSLKWCGLNWDEGPDIGGAYGP 84 (492)
Q Consensus 14 sPtG~-lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~-----~R~~---~~~~~~i~~~l~wlgl~~De~~~~~g~~~p 84 (492)
-|||. |||||+-.+++.+-+-++.+...++-|=|.-. ..+. ......+..++--+|++++.. -.
T Consensus 82 ~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~~~~~~~~~~~~e~~~~~~~~~~~~iA~G~dp~kt-------~i 154 (393)
T 3hv0_A 82 GPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELT-------FI 154 (393)
T ss_dssp CCSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTE-------EE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE-------EE
T ss_conf 68984334999999999999987669877999845665205678999999999999999999718897643-------99
Q ss_pred EECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 32326289999999999988982451488999776688766431000236655578833300112025774078862243
Q gi|255764513|r 85 YRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQ 164 (492)
Q Consensus 85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~ 164 (492)
|.||+....+...+-.|- |..|-. +..+.. +|
T Consensus 155 ~~~s~~~~~~~~~~~~l~-------~~~t~~----------------------------~~k~~~--------~~----- 186 (393)
T 3hv0_A 155 FTNLEYIAELYPDILRIE-------KKISCS----------------------------QIKSIF--------GF----- 186 (393)
T ss_dssp EEHHHHHHHHHHHHHHHH-------HHSBHH----------------------------HHHHHH--------CC-----
T ss_pred EECCHHHHHHHHHHHHHH-------CCCCHH----------------------------HHHHHH--------CC-----
T ss_conf 978489888999999993-------857378----------------------------898774--------46-----
Q ss_pred CEEECCCCC-CCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 114304751-340213643235641000453248986788764444-----44431122354302478899999851000
Q gi|255764513|r 165 GSCVFQDKV-YGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLM-----KITHVARGEEWISSVPKHILLYQYFNFPI 238 (492)
Q Consensus 165 ~~~~~~D~i-~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m-----~ithviRg~d~~~~t~~q~~l~~al~~~~ 238 (492)
.|.+ .|....+.-..-|....+. |+.. ..++|.=|.|-..+--.-..|..-+|+..
T Consensus 187 -----~~~~~~g~~~YP~lQaaDil~~~~-------------d~~~g~~~~~~~lvPvG~DQ~~hi~ltRdia~r~~~~~ 248 (393)
T 3hv0_A 187 -----KDSCNVGKFAFPAVQAAPAFSSSF-------------PHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLK 248 (393)
T ss_dssp -----CTTSBHHHHHHHHHHHGGGSGGGC-------------HHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCC
T ss_pred -----CCCCCCCCCCCCHHHHCHHHHCCC-------------HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf -----777766432453343000343054-------------46516766676625045648999999999999836667
Q ss_pred CHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 00101455531101--3221223433024566629773779989985
Q gi|255764513|r 239 PEFIHLPLIKNPDK--SKLSKRRNPTSISYYSAMGYLPEALINFLAL 283 (492)
Q Consensus 239 p~f~H~pli~~~~g--~klSKR~~~~~i~~~~~~GylPeAilNyLal 283 (492)
|.-.|.|++.+.+| .|+||......|.-. =.|+.+.+.+..
T Consensus 249 ~~~~~~~~lp~L~G~~~KMSsS~~~s~I~L~----D~~~~i~~KI~k 291 (393)
T 3hv0_A 249 PSSIHSIFLPSLQGSQTKMSASVQNSSIFVN----DNEESIRNKIMK 291 (393)
T ss_dssp CEEEEECCCCC-------------CCCCBTT----CCHHHHHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCEECC----CCHHHHHHHHHE
T ss_conf 6300255444467866666678843201345----986899998723
No 39
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3}
Probab=97.61 E-value=0.00012 Score=50.45 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=63.0
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCC-----------------------------------
Q ss_conf 34843388785015999999999999--71884999970486663-----------------------------------
Q gi|255764513|r 10 RIAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTDSKR----------------------------------- 52 (492)
Q Consensus 10 RfaPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd~~R----------------------------------- 52 (492)
==.|-|||.||+||+++..+--.+|| +..|.-++++=-.|.-=
T Consensus 40 ~~pPy~nG~lH~GH~ln~ti~Dii~Ry~rm~G~~V~~~~GwD~~GLP~e~~aek~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (967)
T 1wz2_A 40 VAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTF 119 (967)
T ss_dssp ECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 38998577614548788999999999999679987999868762088999999984779750344556641038889988
Q ss_pred -----CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCEECCCCHHHHHH----HHHHHHHCCCEEECC
Q ss_conf -----886799999999886589--88867655887676323262899999----999999889824514
Q gi|255764513|r 53 -----STLESENAVMQSLKWCGL--NWDEGPDIGGAYGPYRQSERKNIYQP----YVQNLLEKKLAFRCF 111 (492)
Q Consensus 53 -----~~~~~~~~i~~~l~wlgl--~~De~~~~~g~~~p~~QS~r~~~y~~----~~~~L~~~g~aY~c~ 111 (492)
....+.+.+.+.|+-+|+ |||. +|+-+...+-|.+ ...+|.++|++|+..
T Consensus 120 ~~~~~~~~~~~~~~~~q~~rlG~~~DW~r---------~~~T~d~~p~y~~~~~~~F~~l~~kGLiyr~~ 180 (967)
T 1wz2_A 120 EDPINIVKYFMKAAKETFIRAGFSVDWSR---------EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180 (967)
T ss_dssp GSHHHHHHHHHHHHHHHHHTTTCCCCTTS---------CCBCSTTSHHHHHHHHHHHHHTTTTTCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 74999999999999999998292254589---------72626898689999999999999779978676
No 40
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00048 Score=46.30 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCC------------------------------------
Q ss_conf 4843388785015999999999999--71884999970486663------------------------------------
Q gi|255764513|r 11 IAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTDSKR------------------------------------ 52 (492)
Q Consensus 11 faPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd~~R------------------------------------ 52 (492)
=.|-|||.||+||+++..+--.+|| +..|.-+++.=-.|.-=
T Consensus 41 ~pPy~sG~lH~GH~~n~~i~Dii~Ry~rm~G~~V~~~~GwD~~GLP~e~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (810)
T 1wkb_A 41 AFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFE 120 (810)
T ss_dssp CCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89974665355687999999999999996799879998487410899999999837897502334455420488999998
Q ss_pred ----CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCEECCCCHHHH----HHHHHHHHHCCCEEECC
Q ss_conf ----886799999999886589--888676558876763232628999----99999999889824514
Q gi|255764513|r 53 ----STLESENAVMQSLKWCGL--NWDEGPDIGGAYGPYRQSERKNIY----QPYVQNLLEKKLAFRCF 111 (492)
Q Consensus 53 ----~~~~~~~~i~~~l~wlgl--~~De~~~~~g~~~p~~QS~r~~~y----~~~~~~L~~~g~aY~c~ 111 (492)
....+.+.+.+.|+-||+ +||. +|+-....+.| +....+|.++|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~q~~rlG~~~Dw~~---------~~~T~~~~p~y~~~~~~~F~~l~e~Gliyr~~ 180 (810)
T 1wkb_A 121 DPINIVKYFMKAAKETFIRAGFSVDWSR---------EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCCGGG---------CCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCCCHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf 8999999999999999998293575589---------73535898689999999999999769701062
No 41
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3}
Probab=97.54 E-value=0.0038 Score=40.21 Aligned_cols=204 Identities=17% Similarity=0.114 Sum_probs=111.3
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-----CCC-CCCH--------HHHHHHHHHHHHCCCCC
Q ss_conf 056348433887850159999999999997188499997048-----666-3886--------79999999988658988
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDT-----DSK-RSTL--------ESENAVMQSLKWCGLNW 72 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDt-----d~~-R~~~--------~~~~~i~~~l~wlgl~~ 72 (492)
|-|=|.| ||.+||||.-.++.+|.+-...|...++=|-|- |.. ++.+ .+...+...+.-+|+++
T Consensus 36 iy~G~~P--TG~lHLGh~l~~~~~~~~lq~~g~~~~i~IaD~~a~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a~G~dp 113 (375)
T 2cyc_A 36 HYIGFEI--SGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDP 113 (375)
T ss_dssp EEEEECC--CSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCG
T ss_pred EEEEECC--CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9973488--88763075899999999999779977999658030205885456889999999999999999999939890
Q ss_pred CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 86765588767632326289999999999988982451488999776688766431000236655578833300112025
Q gi|255764513|r 73 DEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQ 152 (492)
Q Consensus 73 De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g 152 (492)
+.. -.|.||+-.+.+ ++...+..-+ +..+-.++ .+. .+
T Consensus 114 ~k~-------~i~~qS~~~~~~-~l~~~~~~~~----~~~~l~~~----------------------------~~~--~~ 151 (375)
T 2cyc_A 114 KKV-------EFVLASEILEKG-DYWQTVIDIS----KNVTLSRV----------------------------MRS--IT 151 (375)
T ss_dssp GGS-------EEEETHHHHTBH-HHHHHHHHHH----TTSBHHHH----------------------------HHT--GG
T ss_pred CCC-------EEEECCCCCCHH-HHHHHHHHHC----CCHHHHHH----------------------------HHH--HH
T ss_conf 044-------899625434313-6999999972----31059999----------------------------862--46
Q ss_pred CCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 77407886224311430475134021364323564100045324898678876444444431122354302478899999
Q gi|255764513|r 153 KKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQ 232 (492)
Q Consensus 153 ~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~ 232 (492)
+.++.. ++.+ +=|..+|-+--+.|=.....++|+=|.|-..+--.-..+.+
T Consensus 152 --------------------~~~~~~------~~~~---~~g~~~YP~lQaaDil~~~~~~vpvG~DQ~~~~~l~rdia~ 202 (375)
T 2cyc_A 152 --------------------IMGRQM------GEAI---DFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQ 202 (375)
T ss_dssp --------------------GGTCCC------CTTC---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGG
T ss_pred --------------------HHHHCC------CCCC---CCCEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --------------------663312------6675---40100131265667988630225555202589999999999
Q ss_pred HHHHC---------CCHHHHHHHHHHHH------------------CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 85100---------00010145553110------------------1322122343302456662977377998998506
Q gi|255764513|r 233 YFNFP---------IPEFIHLPLIKNPD------------------KSKLSKRRNPTSISYYSAMGYLPEALINFLALLF 285 (492)
Q Consensus 233 al~~~---------~p~f~H~pli~~~~------------------g~klSKR~~~~~i~~~~~~GylPeAilNyLalLG 285 (492)
.||+. .|...|.|++.+-. |.|+||.++...| .+.+ .|+.|.+=+..--
T Consensus 203 k~n~~~~~~~~~~~~~~~~~~~~l~gL~~~~~~~~~~~~~~~~~~~~~KMSkS~~~s~I-~L~D---tpe~I~kKI~ka~ 278 (375)
T 2cyc_A 203 KLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAV-FIHD---SPEEIRQKLRKAF 278 (375)
T ss_dssp GCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSC-BTTC---CHHHHHHHHHHSC
T ss_pred HHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EECC---CHHHHHHHHHHCC
T ss_conf 83887665556655312211445557666432333222234566677767668988867-6118---9999999987520
Q ss_pred CC
Q ss_conf 76
Q gi|255764513|r 286 VH 287 (492)
Q Consensus 286 ws 287 (492)
..
T Consensus 279 td 280 (375)
T 2cyc_A 279 CP 280 (375)
T ss_dssp CC
T ss_pred CC
T ss_conf 79
No 42
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.52 E-value=0.00032 Score=47.48 Aligned_cols=178 Identities=11% Similarity=0.109 Sum_probs=103.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----CCCC-------HHHHHH-HHHHHHHCCCCCCCCCCCC
Q ss_conf 843388785015999999999999718849999704866----6388-------679999-9999886589888676558
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDS----KRST-------LESENA-VMQSLKWCGLNWDEGPDIG 79 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~----~R~~-------~~~~~~-i~~~l~wlgl~~De~~~~~ 79 (492)
.=-|||.|||||.-.++..+-+.+ .|-+.++=|=|--. .+.. ..+... +...+..+|++.+..
T Consensus 41 G~~PTg~lHLG~~v~~~~l~~~~~-~g~~~~ilIaD~~a~i~d~~~~~~~~~~~~~~~~~~~~a~~~a~g~d~~k~---- 115 (372)
T 1n3l_A 41 GTATTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKL---- 115 (372)
T ss_dssp EECCSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTE----
T ss_pred EECCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----
T ss_conf 268896338999999999999998-899689998051100279999489999999999999999888725888884----
Q ss_pred CCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 87676323262899999999999889824514889997766887664310002366555788333001120257740788
Q gi|255764513|r 80 GAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRL 159 (492)
Q Consensus 80 g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~ 159 (492)
..+.||+-.. ..++...+.. .++ ..+........ ..|.
T Consensus 116 ---~i~~~S~~~~-~~~~~~~~~~-------~~~-------------------------~~~~~~~~~~~------~~~~ 153 (372)
T 1n3l_A 116 ---KFIKGTDYQL-SKEYTLDVYR-------LSS-------------------------VVTQHDSKKAG------AEVV 153 (372)
T ss_dssp ---EEEEGGGTTT-SHHHHHHHHH-------HHT-------------------------TSCHHHHHHHT------TTTS
T ss_pred ---CCCCCCHHHH-HHHHHHHHHH-------HHH-------------------------HHHHHHHHHHH------HHHH
T ss_conf ---1012438766-4678899877-------778-------------------------99998888999------9996
Q ss_pred EECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 62243114304751340213643235641000453248986788764444444311223543024788999998510000
Q gi|255764513|r 160 TVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239 (492)
Q Consensus 160 k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p 239 (492)
+. | +.. +=|..+|-+==+.|=..++.++|+=|.|-..+--.-..+..-||...|
T Consensus 154 ~~-------------~----~~~---------s~~~f~YP~LQaaDil~~~a~iv~~G~DQ~~~i~l~rdla~k~~~~~~ 207 (372)
T 1n3l_A 154 KQ-------------V----EHP---------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR 207 (372)
T ss_dssp CC-------------C----SSC---------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred CC-------------C----CCC---------CHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 24-------------7----898---------635442017876566532677788424788999999999998189987
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 01014555311013221223433
Q gi|255764513|r 240 EFIHLPLIKNPDKSKLSKRRNPT 262 (492)
Q Consensus 240 ~f~H~pli~~~~g~klSKR~~~~ 262 (492)
...|.|++.+.+|.|+||.+...
T Consensus 208 ~~l~~pll~~l~G~k~s~s~~~s 230 (372)
T 1n3l_A 208 VHLMNPMVPGLTGSKMSSSEEES 230 (372)
T ss_dssp EEEEECCCCCSSCC-------CC
T ss_pred EEEECCCCCCHHHHCCCCCCCCC
T ss_conf 48822765531222013699888
No 43
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.46 E-value=0.0015 Score=43.03 Aligned_cols=201 Identities=10% Similarity=0.121 Sum_probs=101.0
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 33887-85015999999999999718849999704866-----6388---679999999988658988867655887676
Q gi|255764513|r 14 SPTGE-PHIGTAYTALFNYLIAKRTGGKFILRIEDTDS-----KRST---LESENAVMQSLKWCGLNWDEGPDIGGAYGP 84 (492)
Q Consensus 14 sPtG~-lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~-----~R~~---~~~~~~i~~~l~wlgl~~De~~~~~g~~~p 84 (492)
-|||. |||||+-.+++++-+.++.|-..++=|=|+-. ..+. ..+......++--+|++++.. -.
T Consensus 110 ~PSg~~lHLGh~l~~~~~k~~Q~~~~~~v~i~iaD~~a~~~~~~~s~e~i~~~~~e~~~~ilA~G~Dp~kt-------~i 182 (432)
T 2ip1_A 110 GPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNT-------FI 182 (432)
T ss_dssp CCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGE-------EE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-------EE
T ss_conf 79996214999999999999997679850589723476364778999999999999999999808593435-------99
Q ss_pred EECCCCH-HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 3232628-999999999998898245148899977668876643100023665557883330011202577407886224
Q gi|255764513|r 85 YRQSERK-NIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPN 163 (492)
Q Consensus 85 ~~QS~r~-~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~ 163 (492)
|.||+-. ..|...+-.|-. .+| ..+..+.. |
T Consensus 183 ~~~s~~~~~~~~~~~~~l~k-------~~t----------------------------~~~~~~~~--~----------- 214 (432)
T 2ip1_A 183 FSDLQYMGGAFYETVVRVSR-------QIT----------------------------GSTAKAVF--G----------- 214 (432)
T ss_dssp EEHHHHCSHHHHHHHHHHHT-------SCC----------------------------HHHHHHTT--C-----------
T ss_pred EEECHHHHHHHHHHHHHHCC-------CCC----------------------------HHHHHHHH--H-----------
T ss_conf 97016665779999997515-------442----------------------------35788877--5-----------
Q ss_pred CCEEECCCCC-CCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 3114304751-340213643235641000453248986788764444444311223543024788999998510000010
Q gi|255764513|r 164 QGSCVFQDKV-YGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242 (492)
Q Consensus 164 ~~~~~~~D~i-~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~ 242 (492)
|.+.+ -|.+. -+++.-+|-. .|.|..+-|--....++|.=|.|-..+--.-.-|..-||+..|.-.
T Consensus 215 -----~~~~~n~g~~~-------yP~lQaAdil-~~~~~~~~~~~~~~~~lvPvG~DQ~~hi~ltRdia~r~~~~~p~~i 281 (432)
T 2ip1_A 215 -----FNDSDCIGKFH-------FASIQIATAF-PSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALL 281 (432)
T ss_dssp -----CCTTSCHHHHH-------THHHHHHTTS-GGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEE
T ss_pred -----HCCCCCCCCCC-------CCHHHHHHHH-HHCHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf -----13555422246-------7257676777-4010444054445687665245478999999999985246887321
Q ss_pred HHHHHHHHHC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 1455531101--3221223433024566629773779989985067
Q gi|255764513|r 243 HLPLIKNPDK--SKLSKRRNPTSISYYSAMGYLPEALINFLALLFV 286 (492)
Q Consensus 243 H~pli~~~~g--~klSKR~~~~~i~~~~~~GylPeAilNyLalLGw 286 (492)
|.|++.+.+| .|+||......|. + .=.|+.|.+-+..--+
T Consensus 282 ~~~~l~~L~g~~~KMSkS~~~s~I~-L---~D~pe~I~kKI~ka~t 323 (432)
T 2ip1_A 282 HSRFFPALQGSTTKMSASDDTTAIF-M---TDTPKQIQKKINKYAF 323 (432)
T ss_dssp EECCCCCTTC--------CGGGCCB-T---TCCHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEE-C---CCCHHHHHHHHHEEEE
T ss_conf 4655335676323455677654787-3---6899999987454772
No 44
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.44 E-value=0.0006 Score=45.64 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCCCCCCCC-CHHHHHHCC
Q ss_conf 32489867887644444443112235430247889999985100000101455531101-3221223433-024566629
Q gi|255764513|r 194 GMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDK-SKLSKRRNPT-SISYYSAMG 271 (492)
Q Consensus 194 g~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g-~klSKR~~~~-~i~~~~~~G 271 (492)
+.++|.+--+.|=..++.++++=|.|-..|--.-..+-..+|...|...|+|++.+.+| +|+||..|.. -+..
T Consensus 171 ~ef~YpllQa~D~~~l~~~~~~gG~DQ~~~i~~~rd~~~r~~~~~~~~~~~p~l~~~~g~~KmskS~~~~i~l~~----- 245 (432)
T 1h3f_A 171 HELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE----- 245 (432)
T ss_dssp GGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf 212442566656777606776673737999998889888618877369973754037876766689999713267-----
Q ss_pred CCHHHHHHHHHH
Q ss_conf 773779989985
Q gi|255764513|r 272 YLPEALINFLAL 283 (492)
Q Consensus 272 ylPeAilNyLal 283 (492)
.|+.+-.|+..
T Consensus 246 -~p~~~~~~~~~ 256 (432)
T 1h3f_A 246 -PPEAMFKKLMR 256 (432)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHHHH
T ss_conf -83889999981
No 45
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A*
Probab=97.42 E-value=0.0079 Score=38.05 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCCCC-CHHHHHHCC
Q ss_conf 324898678876444444431122354302478899999851000001014555311013-221223433-024566629
Q gi|255764513|r 194 GMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKS-KLSKRRNPT-SISYYSAMG 271 (492)
Q Consensus 194 g~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~-klSKR~~~~-~i~~~~~~G 271 (492)
|..+|-+--+-|=...+.++|+=|.|=. .++.+..-+.-..|...|.|++.+.+|. |+||..+.. .+.+
T Consensus 147 g~f~YP~lQaaD~l~~~~~~~~~G~DQ~----~~~~l~rdl~~~~~~~~~~p~l~g~dG~~kmsks~~n~I~L~D----- 217 (314)
T 2zp1_A 147 AEVIYPIMQVNTSHYLGVDVAVGGMEQR----KIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD----- 217 (314)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEGGGH----HHHHHHHHHSSSCCEEEEECCCBCTTSSSBCCTTTTCSCBTTC-----
T ss_pred CEEECCCCHHHHHHHCCCCEEEECHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-----
T ss_conf 4244364010024404784776518888----9999867765302321257776798874566678888777407-----
Q ss_pred CCHHHHHHHHHHCCCC
Q ss_conf 7737799899850676
Q gi|255764513|r 272 YLPEALINFLALLFVH 287 (492)
Q Consensus 272 ylPeAilNyLalLGws 287 (492)
.|+.+..-+...=+.
T Consensus 218 -~pe~i~~Ki~~a~td 232 (314)
T 2zp1_A 218 -SPEEIRAKIKKAYCP 232 (314)
T ss_dssp -CHHHHHHHHHHSCCC
T ss_pred -CHHHHHHHHHEEECC
T ss_conf -878998865431378
No 46
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.15 E-value=0.0011 Score=43.79 Aligned_cols=89 Identities=19% Similarity=0.370 Sum_probs=59.4
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCC--------------CCC--------------CCHHHHH
Q ss_conf 34843388785015999999999999--71884999970486--------------663--------------8867999
Q gi|255764513|r 10 RIAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTD--------------SKR--------------STLESEN 59 (492)
Q Consensus 10 RfaPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd--------------~~R--------------~~~~~~~ 59 (492)
=-.|-|||.||+||+++-..--.+|| ...|.-+|.+=-.| ..+ ...++++
T Consensus 54 ~~pPY~nG~LHiGHa~~~t~~DiiaRykrm~G~~Vl~~~GwD~~GlPiE~~a~k~~~~~~~~~~~~~~~~~~~~~~~~i~ 133 (917)
T 1ffy_A 54 DGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIE 133 (917)
T ss_dssp CCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 48989888602426687899999999987489988998831401799999999859980018999999999999999999
Q ss_pred HHHHHHHHCCC--CCCCCCCCCCCCCCEECCCCHHHH----HHHHHHHHHCCCEEE
Q ss_conf 99999886589--888676558876763232628999----999999998898245
Q gi|255764513|r 60 AVMQSLKWCGL--NWDEGPDIGGAYGPYRQSERKNIY----QPYVQNLLEKKLAFR 109 (492)
Q Consensus 60 ~i~~~l~wlgl--~~De~~~~~g~~~p~~QS~r~~~y----~~~~~~L~~~g~aY~ 109 (492)
.+.++|+-+|+ ||+. +|.-.+ +.| +....+|.++|++|+
T Consensus 134 ~~~~~~k~lG~~~DW~r---------~~~T~d--p~y~~~~~~~F~~l~~~Gliyr 178 (917)
T 1ffy_A 134 LQKKDFRRLGVRGDFND---------PYITLK--PEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHTTTCCSCTTS---------CEETTS--HHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCEECCCC---------CCCCCC--HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99999998366052899---------826489--8899999999999998699696
No 47
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei}
Probab=97.11 E-value=0.00071 Score=45.14 Aligned_cols=171 Identities=9% Similarity=0.100 Sum_probs=90.1
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----CCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 433887-85015999999999999718849999704866----638---8679999999988658988867655887676
Q gi|255764513|r 13 PSPTGE-PHIGTAYTALFNYLIAKRTGGKFILRIEDTDS----KRS---TLESENAVMQSLKWCGLNWDEGPDIGGAYGP 84 (492)
Q Consensus 13 PsPtG~-lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~----~R~---~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p 84 (492)
=-|||. |||||+-.++++.-+-.+.+..+++=|-|+-. .-+ ..+.......++--+|++++.. --
T Consensus 85 ~~PSg~~lHLGh~v~~~~~~~lQ~~~~~~~~I~iaD~~~~~~~~~~~~~~~~~~~~~~~~~lA~G~Dp~kt-------~i 157 (395)
T 3i05_A 85 RGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELT-------FI 157 (395)
T ss_dssp ECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSE-------EE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-------EE
T ss_conf 47898642099999999999998637860599815453313779999999999999999999828993144-------99
Q ss_pred EECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 32326289999999999988982451488999776688766431000236655578833300112025774078862243
Q gi|255764513|r 85 YRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQ 164 (492)
Q Consensus 85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~ 164 (492)
+.||+-...|...+-+|- |.+|- .+..... |
T Consensus 158 ~~~s~~~~~~~~~~~~l~-------~~~t~----------------------------~~~~~~~--g------------ 188 (395)
T 3i05_A 158 FRDFDYMGCMYRTVAKIE-------RAFTA----------------------------SQVRGCF--G------------ 188 (395)
T ss_dssp EEHHHHTTTSHHHHHHHH-------HHSBH----------------------------HHHHHHH--C------------
T ss_pred EECHHHHHHHHHHHHHHH-------CCCCC----------------------------CHHHHHH--C------------
T ss_conf 955487887899999996-------66640----------------------------2698874--5------------
Q ss_pred CEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH------------HHHHCCCCCCCHHHHHHHHHH
Q ss_conf 11430475134021364323564100045324898678876444444------------431122354302478899999
Q gi|255764513|r 165 GSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKI------------THVARGEEWISSVPKHILLYQ 232 (492)
Q Consensus 165 ~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~i------------thviRg~d~~~~t~~q~~l~~ 232 (492)
|+|. . +=|.-+|-+--+.|=..... +-|.=|.|-..+--.-.-|..
T Consensus 189 ----f~~~---------~---------~~g~~~YP~lQaaDil~~~~~~~~~~~~~~~~~lvpvG~DQ~~~~~ltRdia~ 246 (395)
T 3i05_A 189 ----FAME---------D---------NCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAP 246 (395)
T ss_dssp ----CCTT---------S---------BHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHH
T ss_pred ----CCCC---------C---------CCCCCCCCHHHHCCHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ----6777---------6---------55300331454200675335143033224567612156678999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHC--CCCCCCCCC
Q ss_conf 85100000101455531101--322122343
Q gi|255764513|r 233 YFNFPIPEFIHLPLIKNPDK--SKLSKRRNP 261 (492)
Q Consensus 233 al~~~~p~f~H~pli~~~~g--~klSKR~~~ 261 (492)
-+|+..|.-.|.|+|.+-+| +|+||..+.
T Consensus 247 k~~~~~p~~~~~~~l~gL~G~~kkmSss~~~ 277 (395)
T 3i05_A 247 RLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT 277 (395)
T ss_dssp HHTCCCCEEEEECCCCCC-------------
T ss_pred HHCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 8267876011366655577998777889987
No 48
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.98 E-value=0.00099 Score=44.17 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=47.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 443112235430247889999985100000101455531101--32212234330245666297737799899850
Q gi|255764513|r 211 ITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDK--SKLSKRRNPTSISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 211 ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g--~klSKR~~~~~i~~~~~~GylPeAilNyLalL 284 (492)
.++|.=|.|-..+--.-.-|-.-+|+..|.-.|.|++.+-+| +|+||-+...+|. + .=.|+.|.+-+...
T Consensus 304 ~~LVPvG~DQ~~hi~ltRDiA~R~~~~kP~~l~~~~lpgL~G~~~KMSsS~~~saI~-L---~Dspe~IkkKI~k~ 375 (477)
T 1r6t_A 304 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF-L---TDTAKQIKTKVNKH 375 (477)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCB-T---TCCHHHHHHHHHHH
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEE-C---CCCHHHHHHHHHHH
T ss_conf 334033030899999999999983568860001455556789777736789877544-3---69999999998872
No 49
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A
Probab=96.98 E-value=0.0095 Score=37.49 Aligned_cols=202 Identities=17% Similarity=0.122 Sum_probs=116.0
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCCC--CCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7705634843388785015999999999999718849999704----8666--388679999999988658988867655
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED----TDSK--RSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD----td~~--R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
..|-|=|.| ||.+||||.-.++-+|..- |.|...+.=|=| |... ....+....+..++--+|++++-..
T Consensus 2 krv~tG~~P--SG~~HlG~~~g~i~~~~~l-q~~~~~~i~iAD~ha~~~~~~~~~l~~~~~~~~~~~~A~G~dp~k~~-- 76 (328)
T 1i6k_A 2 KTIFSGIQP--SGVITIGNYIGALRQFVEL-QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQAT-- 76 (328)
T ss_dssp CEEEEEECC--CSCCBHHHHHHTHHHHHHH-TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEE--
T ss_pred CEEEECCCC--CCCCHHHHHHHHHHHHHHH-HCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE--
T ss_conf 846857288--8703788899999999998-57998899963086640678999999999999999998379987307--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
-|+||+-.+.+ ++. ..|.|.|+-.++...+.... ....+
T Consensus 77 -----i~~qs~~~~~~-~l~-------~~~~~~~~~~~~~r~~~~k~----------------------~~~~~------ 115 (328)
T 1i6k_A 77 -----LFIQSEVPAHA-QAA-------WMLQCIVYIGELERMTQFKE----------------------KSAGK------ 115 (328)
T ss_dssp -----EEEGGGCTHHH-HHH-------HHHHHHSCHHHHHTCHHHHH----------------------HHTTC------
T ss_pred -----EEECCCCHHHH-HHH-------HHHHHHHHHHHHHHHHHHHH----------------------HHCCC------
T ss_conf -----98504235578-999-------99985324788887641232----------------------21246------
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 86224311430475134021364323564100045324898678876444444431122354302478899999851000
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPI 238 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~ 238 (492)
++..+ |.-+|-.--+-|=...+.++|.=|+|-..---.-..+...||+..
T Consensus 116 ---------------------~~~~~---------g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~~ltRdia~k~n~~~ 165 (328)
T 1i6k_A 116 ---------------------EAVSA---------GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY 165 (328)
T ss_dssp ---------------------SSCCH---------HHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCCC---------CCCCCCHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf ---------------------78872---------323756876203063189915488026899999999998746524
Q ss_pred CHHHHHHH----------HHHH-HCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 00101455----------5311-0132212234330245666297737799899850
Q gi|255764513|r 239 PEFIHLPL----------IKNP-DKSKLSKRRNPTSISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 239 p~f~H~pl----------i~~~-~g~klSKR~~~~~i~~~~~~GylPeAilNyLalL 284 (492)
+...|.|. +-.. .++|+||-++..... ...--.|+.+.+=+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~kmskS~~~~~~~--I~l~d~~~~i~kKi~~a 220 (328)
T 1i6k_A 166 GELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAY--ITLLDDAKTIEKKIKSA 220 (328)
T ss_dssp CSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGC--CBTTCCHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHCCC
T ss_conf 87567731135654345652489876677678985553--03658999999741446
No 50
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=96.95 E-value=0.0027 Score=41.23 Aligned_cols=89 Identities=27% Similarity=0.413 Sum_probs=62.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCC--
Q ss_conf 4843388785015999999999999--718849999704866----------------63886799999999886589--
Q gi|255764513|r 11 IAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFILRIEDTDS----------------KRSTLESENAVMQSLKWCGL-- 70 (492)
Q Consensus 11 faPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l~wlgl-- 70 (492)
=-|-|||.||+||++|-..--.+|| ...|.-+++.=-.|. .-.+..+.+.+.+.|+-+|+
T Consensus 40 ~pPy~nG~lHiGHal~~tikDii~Rykrm~G~~V~~~~GwD~~GlPiE~~v~k~~~~~~~~~~~~i~~~k~~~~~lG~~~ 119 (878)
T 2v0c_A 40 MFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119 (878)
T ss_dssp CCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCEEE
T ss_conf 89998886002156888999999999873899789988436674999999999498579999999999999999839744
Q ss_pred CCCCCCCCCCCCCCEECCCCHHHHH----HHHHHHHHCCCEEEC
Q ss_conf 8886765588767632326289999----999999988982451
Q gi|255764513|r 71 NWDEGPDIGGAYGPYRQSERKNIYQ----PYVQNLLEKKLAFRC 110 (492)
Q Consensus 71 ~~De~~~~~g~~~p~~QS~r~~~y~----~~~~~L~~~g~aY~c 110 (492)
|||. +|.-.+ +.|. ....+|.++|++|+-
T Consensus 120 DW~~---------~y~T~d--~~y~~~v~~~F~~L~~kGliyrg 152 (878)
T 2v0c_A 120 DWDR---------EVTTCE--PEYYRWNQWIFLKMWEKGLAYRA 152 (878)
T ss_dssp CGGG---------CCBTTS--HHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCC---------CEECCC--HHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 2689---------816589--87999999999999987997747
No 51
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.46 E-value=0.019 Score=35.48 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=47.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 443112235430247889999985100000101455531101--32212234330245666297737799899850
Q gi|255764513|r 211 ITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDK--SKLSKRRNPTSISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 211 ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g--~klSKR~~~~~i~~~~~~GylPeAilNyLalL 284 (492)
.+.|.=|.|-..+--.-.-|..-+|+..|.-.|.|++.+-+| +|+||-+...+| ++-+ .|+.|-+-+...
T Consensus 257 ~~lVPvG~DQ~~hi~ltRdia~r~~~~~p~~i~~~~lp~L~G~~~KMSsS~~~saI-~L~D---~p~~I~kKI~k~ 328 (437)
T 1r6u_A 257 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI-FLTD---TAKQIKTKVNKH 328 (437)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCC-BTTC---CHHHHHHHHHHT
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCC---CHHHHHHHHHEE
T ss_conf 24623335689999999999998367886332144555678766767778986601-0579---999999864435
No 52
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.66 E-value=0.027 Score=34.41 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHCC----------------CHH-HHHHHHHHHHCCC
Q ss_conf 48986788764444----44431122354302478899999851000----------------001-0145553110132
Q gi|255764513|r 196 PTYHLANVIDDHLM----KITHVARGEEWISSVPKHILLYQYFNFPI----------------PEF-IHLPLIKNPDKSK 254 (492)
Q Consensus 196 ptY~~a~vvDD~~m----~ithviRg~d~~~~t~~q~~l~~al~~~~----------------p~f-~H~pli~~~~g~k 254 (492)
.+|.+--+.|=..+ +++--|-|.|-.-|--.=+.+.+.++-.. +.| .+.|||.+.||+|
T Consensus 214 f~YpllQayDf~~L~~~~~~~lqiGGsDQ~gNi~~G~dlir~~~~~~~~~~~~~~~~~~~~~~~~~glT~PLLt~~dG~K 293 (392)
T 1y42_X 214 FTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAK 293 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCEEEEECCCEECCCCCH
T ss_conf 44687743449999998488705742430476776888999843346320010123332256640575215544798304
Q ss_pred CCCCCCC-CCHHHHHHCCCCHHHHHHHHH
Q ss_conf 2122343-302456662977377998998
Q gi|255764513|r 255 LSKRRNP-TSISYYSAMGYLPEALINFLA 282 (492)
Q Consensus 255 lSKR~~~-~~i~~~~~~GylPeAilNyLa 282 (492)
+||..|. +.+. +.--.|..+..|+.
T Consensus 294 mgKS~gnaIwLd---~~~tSpye~yq~~~ 319 (392)
T 1y42_X 294 FGKSAGNAIWLD---PYQTSVFDFYGYFV 319 (392)
T ss_dssp TTBCSSSBCBSS---TTTSCHHHHHHHHH
T ss_pred HHHHCCCCCCCC---CCCCCHHHHHHHHH
T ss_conf 665058975046---77667789999983
No 53
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129}
Probab=95.39 E-value=0.039 Score=33.36 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=90.7
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----CCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7705634843388785015999999999999718849999704-----8666-388679999999988658988867655
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIED-----TDSK-RSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieD-----td~~-R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
..|-|=|. |||.+||||.-.++.+|.+-.. ++..++=|-| ++.. ....+.....+.+.--+|++++...
T Consensus 5 ~rv~tG~~--PSG~~HLGh~i~~i~~~~~lQ~-~~~~~i~IAD~ha~~~~~~~~~~~~~~~~~~~~~la~g~dp~~~~-- 79 (348)
T 2yy5_A 5 KRALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKAC-- 79 (348)
T ss_dssp CEEEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEE--
T ss_pred CEEEECCC--CCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE--
T ss_conf 60466837--8970567769999999999966-698899973187761699899999999999999998178855527--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
-|.||+-.+.. ++.-.+. |+++--++......... . -+
T Consensus 80 -----~~~qs~~~~~~-el~~~~~-------~~~~~~~l~~~~~~~~~------------------------~-----~~ 117 (348)
T 2yy5_A 80 -----LFLQSDLLEHS-MMGYLMM-------VQSNLGELQRMTQFKAK------------------------K-----AE 117 (348)
T ss_dssp -----EEEGGGCHHHH-HHHHHHH-------HHSBHHHHHHCHHHHTT------------------------C-------
T ss_pred -----EEECCCCCCHH-HHHHHHH-------CHHHHHHHHHHHHHHHH------------------------H-----HH
T ss_conf -----97303350068-8999983-------32788999998876666------------------------6-----43
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 862243114304751340213643235641000453248986788764444444311223543024788999998510
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~ 236 (492)
+.. .. .+. .+..+ |..+|=.-=+.|=...+.++|.=|.|-...--.-..+...||.
T Consensus 118 ~~~----~~------~~~---~~~~~---------g~~~YP~lQaaDil~~~~~~vp~G~DQ~~~~~ltRdia~kfn~ 173 (348)
T 2yy5_A 118 QTR----NP------NGT---LNIPT---------GLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQK 173 (348)
T ss_dssp ----------------------CCBT---------HHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHH
T ss_pred HCC----CC------CCC---CCCCH---------HHCCCHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 002----44------555---56432---------4104816752022641788787872189999999999875023
No 54
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=94.45 E-value=0.022 Score=35.02 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=50.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHH-HHHCCC--HHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 444311223543024788999998-510000--0101455531101322122343-302456662977377998998506
Q gi|255764513|r 210 KITHVARGEEWISSVPKHILLYQY-FNFPIP--EFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLF 285 (492)
Q Consensus 210 ~ithviRg~d~~~~t~~q~~l~~a-l~~~~p--~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLG 285 (492)
-+...+=|-||+.+-..-.....+ +--+.| ....+.++++++|+||||..|- ++..+.. ++|=++|+.-|++..+
T Consensus 544 PvD~~~~G~D~~r~w~~~~~~~~~~~~~~~pfk~l~~~G~Vld~~G~KMSKSkGNvi~p~~ii-~~yGaD~lRl~l~~~~ 622 (821)
T 1ile_A 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDII-RKFGADALRWYIYVSA 622 (821)
T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHH-TTTCHHHHHHHHHHHS
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHH-HHCCHHHHHHHHHCCC
T ss_conf 970897310777668999998555542897550436676599999987877899989989998-6549889999762057
Q ss_pred C
Q ss_conf 7
Q gi|255764513|r 286 V 286 (492)
Q Consensus 286 w 286 (492)
-
T Consensus 623 ~ 623 (821)
T 1ile_A 623 P 623 (821)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 55
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=92.51 E-value=0.15 Score=29.36 Aligned_cols=91 Identities=20% Similarity=0.313 Sum_probs=53.4
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEE---EECCCCCC-----------------------C-------C
Q ss_conf 634843388785015999999999999--71884999---97048666-----------------------3-------8
Q gi|255764513|r 9 VRIAPSPTGEPHIGTAYTALFNYLIAK--RTGGKFIL---RIEDTDSK-----------------------R-------S 53 (492)
Q Consensus 9 ~RfaPsPtG~lH~G~~rtal~n~l~a~--~~~g~f~l---RieDtd~~-----------------------R-------~ 53 (492)
+=--|-|||.||+||+|+....-.+|| +..|.-+| =.|-|-.+ + .
T Consensus 43 ~~~~PY~sG~LH~GH~~~~t~~Dv~aRy~rm~G~nVl~p~G~D~~GlPiE~~~~k~~~~~~~~~~~~~~i~~~~~~~~~~ 122 (821)
T 1ile_A 43 YEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRES 122 (821)
T ss_dssp CCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHH
T ss_conf 81898878860454878899999999999958998999871402279999999998476888743441799999999999
Q ss_pred CHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCEECCCCHHHHH----HHHHHHHHCCCEEEC
Q ss_conf 86799999999886589--8886765588767632326289999----999999988982451
Q gi|255764513|r 54 TLESENAVMQSLKWCGL--NWDEGPDIGGAYGPYRQSERKNIYQ----PYVQNLLEKKLAFRC 110 (492)
Q Consensus 54 ~~~~~~~i~~~l~wlgl--~~De~~~~~g~~~p~~QS~r~~~y~----~~~~~L~~~g~aY~c 110 (492)
...+.+.+.+.|+-+|+ ||+-. |.-++ +.|. ....+|.++|++|+-
T Consensus 123 ~~~~~~~~~~~~~~lG~~~DW~r~---------~~T~d--p~y~~~~~w~F~~L~~~gliy~~ 174 (821)
T 1ile_A 123 VFTYEKEWEAFTERIAYWVDLEDA---------YATLE--PTYIESIWWSLKNLFDRGLLYRD 174 (821)
T ss_dssp TTTTHHHHTTHHHHTTCCCEEEEE---------EETTS--HHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHCEEEEECCCC---------CCCCC--HHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 999999999999853267835887---------24288--99999999999999977995632
No 56
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens}
Probab=87.89 E-value=0.16 Score=29.13 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHH
Q ss_conf 248986788764444----4443112235430247889999985100000101455531101322122343-30245666
Q gi|255764513|r 195 MPTYHLANVIDDHLM----KITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNP-TSISYYSA 269 (492)
Q Consensus 195 ~ptY~~a~vvDD~~m----~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~-~~i~~~~~ 269 (492)
-++|.+.-+.|-..+ +++-.+=|-|-.-|--.=+.+.+-+|+++|.-.|.|||.+.+|+|+||-.+. +.+..
T Consensus 191 Ef~YplmQa~D~~~L~~~~~~diqiGG~DQ~~ni~~grdl~~~~~~~~~~~lt~pLL~~~~G~KmgKS~~nai~L~~--- 267 (356)
T 2pid_A 191 EFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR--- 267 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST---
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC---
T ss_conf 88788885888999986349851540346088999899999982698760786057567889703224578652134---
Q ss_pred CCCCHHHHHHHH
Q ss_conf 297737799899
Q gi|255764513|r 270 MGYLPEALINFL 281 (492)
Q Consensus 270 ~GylPeAilNyL 281 (492)
.==.|..+.+|.
T Consensus 268 ~~tSp~e~yqk~ 279 (356)
T 2pid_A 268 DKTSPFELYQFF 279 (356)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 558869999999
No 57
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=78.82 E-value=0.23 Score=28.10 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCC-----------CCCCCC---CHHHHHHCCCCH
Q ss_conf 51000001014555311013221-----------223433---024566629773
Q gi|255764513|r 234 FNFPIPEFIHLPLIKNPDKSKLS-----------KRRNPT---SISYYSAMGYLP 274 (492)
Q Consensus 234 l~~~~p~f~H~pli~~~~g~klS-----------KR~~~~---~i~~~~~~GylP 274 (492)
+++.+|.+.|+|+++++++.|+| +|.|-+ -+..+-..|+.+
T Consensus 263 ~~~~~lskrhl~~~v~~~~~~~~d~~~~~ti~~~r~~G~~peAi~nfl~~lG~s~ 317 (553)
T 1qtq_A 263 LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTK 317 (553)
T ss_dssp BTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 5554320022420135777776668875028899886998699999999838788
No 58
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=71.90 E-value=3.9 Score=19.76 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC--CCCHHHHHH
Q ss_conf 489867887644444----44311223543024788999998510000010145553110132212234--330245666
Q gi|255764513|r 196 PTYHLANVIDDHLMK----ITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRN--PTSISYYSA 269 (492)
Q Consensus 196 ptY~~a~vvDD~~m~----ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~--~~~i~~~~~ 269 (492)
.+|.+-=.-|=..+. +.-=|=|-|-.-|--.-+.+.+..+-.++.-..+|||.+.||.|+||-.+ ++-+..
T Consensus 169 F~YpllQayD~v~L~~~~~~dvqiGGsDQ~gNi~~G~~l~~~~~~~~~~~lT~PLL~~~dG~K~gks~~~~~iwld~--- 245 (432)
T 2jan_A 169 FSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLDP--- 245 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSST---
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECC---
T ss_conf 53677768799998762496279974778999997688998747875268863252279878323413687424236---
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 29773779989985
Q gi|255764513|r 270 MGYLPEALINFLAL 283 (492)
Q Consensus 270 ~GylPeAilNyLal 283 (492)
.=..|..+..|+..
T Consensus 246 ~~tsP~~~yq~~~n 259 (432)
T 2jan_A 246 QMTSPYAWYQYFVN 259 (432)
T ss_dssp TTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCC
T ss_conf 88886999977402
No 59
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein structure initiative, structural genomics consortium, SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens} SCOP: c.37.1.5
Probab=65.45 E-value=4.9 Score=19.08 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 0146777652021
Q gi|255764513|r 296 MDMQQLIHHFDLH 308 (492)
Q Consensus 296 fsl~eli~~FdL~ 308 (492)
.+.++.++.|...
T Consensus 154 ~~~~~~~~~~~~g 166 (296)
T 3bfx_A 154 GTWEEYFETFING 166 (296)
T ss_dssp CSHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCC
T ss_conf 3389999984069
No 60
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=64.85 E-value=2.4 Score=21.19 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCC
Q ss_conf 8986788764444----4443112235430247889999985100000101455531101322122343-3024566629
Q gi|255764513|r 197 TYHLANVIDDHLM----KITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMG 271 (492)
Q Consensus 197 tY~~a~vvDD~~m----~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~G 271 (492)
+|.+--+.|=..+ +++--+=|-|-..|--.=+.+.+-+|.++|--.|.||+.+.+|.|+||-.+. +.+..-.
T Consensus 174 ~YpllQayD~~~L~~~~~~~iqiGGsDQ~~ni~~Grdl~~~~~~~~~~~it~pLl~~~~G~K~gKS~~n~i~l~~~~--- 250 (322)
T 2yxn_A 174 SYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDPKK--- 250 (322)
T ss_dssp THHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSSTTT---
T ss_pred HHHHHHHCCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC---
T ss_conf 77888430199973667831565365237788879999998369982899821653010147888733765322234---
Q ss_pred CCHHHHHHHHH
Q ss_conf 77377998998
Q gi|255764513|r 272 YLPEALINFLA 282 (492)
Q Consensus 272 ylPeAilNyLa 282 (492)
-.|..+.+|..
T Consensus 251 tsp~~~~~k~~ 261 (322)
T 2yxn_A 251 TSPYKFYQFWI 261 (322)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 58699999881
No 61
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Probab=61.55 E-value=7.5 Score=17.83 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHCCCH
Q ss_conf 889999999999957982
Q gi|255764513|r 419 ENIETALRNVAQHREKSL 436 (492)
Q Consensus 419 e~Ie~~ik~i~e~~giK~ 436 (492)
+.+++.+.+.++++|+++
T Consensus 274 ~~~~~~~~~~m~~~g~~f 291 (295)
T 2zpt_X 274 EKFEEDYVKKMEDSTLKF 291 (295)
T ss_dssp HHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCCE
T ss_conf 999999999967899821
No 62
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genomics consortium, SGC, alternative splicing, cytoplasm, polymorphism; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*
Probab=58.22 E-value=6.2 Score=18.40 Aligned_cols=11 Identities=9% Similarity=0.416 Sum_probs=6.3
Q ss_pred CCHHHHHHHHH
Q ss_conf 01467776520
Q gi|255764513|r 296 MDMQQLIHHFD 306 (492)
Q Consensus 296 fsl~eli~~Fd 306 (492)
-++++.++.|-
T Consensus 163 ~~~~~~~~~f~ 173 (305)
T 2reo_A 163 QNLEEFYEKFM 173 (305)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHC
T ss_conf 02999998720
No 63
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 1z28_A* 1z29_A* 1cjm_A 2a3r_A*
Probab=56.16 E-value=8.6 Score=17.41 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 01467776520211
Q gi|255764513|r 296 MDMQQLIHHFDLHH 309 (492)
Q Consensus 296 fsl~eli~~FdL~~ 309 (492)
.+.++.++.|....
T Consensus 153 ~~~~~~~~~f~~~~ 166 (295)
T 1ls6_A 153 GTWDSFLEKFMVGE 166 (295)
T ss_dssp CCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCC
T ss_conf 33999998850796
No 64
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} SCOP: c.37.1.5
Probab=56.12 E-value=5.8 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=9.0
Q ss_pred CCCEEEC-CCCHHHHHHHHH
Q ss_conf 8982451-488999776688
Q gi|255764513|r 104 KKLAFRC-FCSTERLEEMRR 122 (492)
Q Consensus 104 ~g~aY~c-~~t~eel~~~r~ 122 (492)
+|.-||- +||++.|+...+
T Consensus 20 ~g~~~p~~~~~~~~~~~~~~ 39 (350)
T 1q1q_A 20 KGVPFPVGLYSLESISLAEN 39 (350)
T ss_dssp TTEEEEBTTBCHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHH
T ss_conf 99991565589999999985
No 65
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=56.03 E-value=4.8 Score=19.16 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCCCCCCCCHHHHHHC
Q ss_conf 48986788764444----444311223543024788999998510000010-1455531101322122343302456662
Q gi|255764513|r 196 PTYHLANVIDDHLM----KITHVARGEEWISSVPKHILLYQYFNFPIPEFI-HLPLIKNPDKSKLSKRRNPTSISYYSAM 270 (492)
Q Consensus 196 ptY~~a~vvDD~~m----~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~-H~pli~~~~g~klSKR~~~~~i~~~~~~ 270 (492)
.+|.+--..|=..+ +++-=+=|-|-.-|--.=+.|.+-..-..|.|+ .+|||.+.+|+|+||-.+.. -++-+.
T Consensus 167 f~Y~llQayD~~~L~~~~~~~iqiGGsDQ~gNi~~G~dLir~~~g~~~~~glT~PLL~~~dG~K~gKS~~n~--iwl~~~ 244 (419)
T 2ts1_A 167 FSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGT--IWLDKE 244 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCC--CBSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCC--CCCCCC
T ss_conf 110212000156777635840688330567899888999986359876248841310388877503117998--734456
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9773779989985
Q gi|255764513|r 271 GYLPEALINFLAL 283 (492)
Q Consensus 271 GylPeAilNyLal 283 (492)
--.|..+..|...
T Consensus 245 ~tSPy~~yq~~mn 257 (419)
T 2ts1_A 245 KTSPYEFYQFWIN 257 (419)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHCC
T ss_conf 6897999978437
No 66
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=53.84 E-value=10 Score=16.87 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=58.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHCCCCCCCCCC-CCHHHHHH
Q ss_conf 48986788764----44444431122354302478899999851000001014-55531101322122343-30245666
Q gi|255764513|r 196 PTYHLANVIDD----HLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL-PLIKNPDKSKLSKRRNP-TSISYYSA 269 (492)
Q Consensus 196 ptY~~a~vvDD----~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~-pli~~~~g~klSKR~~~-~~i~~~~~ 269 (492)
.+|.+.-.-|= -..+++-=|=|-|-.-|--.=+.|.+-.+-..|.|+=. ||+.+.+|+|+||--|. +-+. +
T Consensus 168 F~YpllQayDf~~L~~~~~~~iqiGGsDQ~gNi~~G~~Li~~~~~~~~~~glt~pLl~~~~G~KmgKS~~n~iwL~---~ 244 (420)
T 1jil_A 168 FTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLD---A 244 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSS---T
T ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEECCCEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHCCCCCEEEC---C
T ss_conf 4115566767999887609228995030001266658888754377753999840037766657022379843502---5
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 29773779989985
Q gi|255764513|r 270 MGYLPEALINFLAL 283 (492)
Q Consensus 270 ~GylPeAilNyLal 283 (492)
.--.|..+..|...
T Consensus 245 ~~tSP~~~yq~~m~ 258 (420)
T 1jil_A 245 EKTSPYEFYQFWIN 258 (420)
T ss_dssp TTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHC
T ss_conf 77883999999851
No 67
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Probab=51.53 E-value=6.9 Score=18.09 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=7.0
Q ss_pred HCCHHHHHHHHH
Q ss_conf 101467776520
Q gi|255764513|r 295 LMDMQQLIHHFD 306 (492)
Q Consensus 295 ifsl~eli~~Fd 306 (492)
..+.++.++.|-
T Consensus 156 ~~~~~~~~~~f~ 167 (299)
T 1q20_A 156 PGTPDQFLRDFL 167 (299)
T ss_dssp CCSHHHHHHHHH
T ss_pred CCCHHHHHHHHC
T ss_conf 668899999822
No 68
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human cytosolic sulfotransferase, resveratrol, SGC, cytoplasm, lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens} PDB: 2z5f_A*
Probab=50.89 E-value=8.7 Score=17.38 Aligned_cols=17 Identities=0% Similarity=0.067 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHCCCH
Q ss_conf 89999999999957982
Q gi|255764513|r 420 NIETALRNVAQHREKSL 436 (492)
Q Consensus 420 ~Ie~~ik~i~e~~giK~ 436 (492)
.+++.+.+.++..|+++
T Consensus 278 ~~~~~~~~~m~~~g~~f 294 (298)
T 3ckl_A 278 KFDAIYETEMSKTALQF 294 (298)
T ss_dssp HHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHCCCCCEE
T ss_conf 99999999966899732
No 69
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*
Probab=38.24 E-value=18 Score=15.28 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHCCCH
Q ss_conf 889999999999957982
Q gi|255764513|r 419 ENIETALRNVAQHREKSL 436 (492)
Q Consensus 419 e~Ie~~ik~i~e~~giK~ 436 (492)
+.+++.+++.++++|+++
T Consensus 276 ~~~d~~~~e~m~~~g~~f 293 (297)
T 1aqu_A 276 ERFDEHYKQQMKDCTVKF 293 (297)
T ss_dssp HHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHCCCCCCE
T ss_conf 999999999845799820
No 70
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=35.30 E-value=7.2 Score=17.93 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCH------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 7887644444443112-2354302------------4788999998510000010145553110132
Q gi|255764513|r 201 ANVIDDHLMKITHVAR-GEEWISS------------VPKHILLYQYFNFPIPEFIHLPLIKNPDKSK 254 (492)
Q Consensus 201 a~vvDD~~m~ithviR-g~d~~~~------------t~~q~~l~~al~~~~p~f~H~pli~~~~g~k 254 (492)
+.+.||+..-|..|+- =+|||.| ...-.+||+-++|.-|.=.|++-+.++++.+
T Consensus 3 ~~~~~e~k~fi~~i~erIeefL~~~e~k~l~lepCngFqRKLIYQ~l~~rf~~~i~veT~~~Enk~r 69 (87)
T 1ug8_A 3 SGSSGDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKER 69 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCSSCCEEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCE
T ss_conf 8884137899999999999997087656146488717999999999987667772667766057732
No 71
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND; 1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A* 2qp3_A* 2qp4_A* 1efh_A*
Probab=34.88 E-value=17 Score=15.41 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=10.3
Q ss_pred CCCEEE-CCCCHHHHHHHHH
Q ss_conf 898245-1488999776688
Q gi|255764513|r 104 KKLAFR-CFCSTERLEEMRR 122 (492)
Q Consensus 104 ~g~aY~-c~~t~eel~~~r~ 122 (492)
+|..|| +.|+++.++..++
T Consensus 17 ~G~~~p~~~~~~~~~~~~~~ 36 (293)
T 1j99_A 17 EGIAFPTMGFRSETLRKVRD 36 (293)
T ss_dssp TTEEECSSSCCHHHHHHHHH
T ss_pred CCEECCCCCCCHHHHHHHHH
T ss_conf 47881777779999999983
No 72
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'- diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda} SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Probab=32.02 E-value=22 Score=14.62 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 014677765202113
Q gi|255764513|r 296 MDMQQLIHHFDLHHL 310 (492)
Q Consensus 296 fsl~eli~~FdL~~I 310 (492)
-++++..+.|.-..+
T Consensus 208 ~~~~~~~~~f~~~~~ 222 (351)
T 1fmj_A 208 SNFKDFWEMFHRGLY 222 (351)
T ss_dssp CCHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCCCCC
T ss_conf 679999987203653
No 73
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=29.43 E-value=15 Score=15.71 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEE----EC------CCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8887705634843388-785015999999999999718849999----70------486663886799999999886589
Q gi|255764513|r 2 ISSSKVRVRIAPSPTG-EPHIGTAYTALFNYLIAKRTGGKFILR----IE------DTDSKRSTLESENAVMQSLKWCGL 70 (492)
Q Consensus 2 ~~~~~v~~RfaPsPtG-~lH~G~~rtal~n~l~a~~~~g~f~lR----ie------Dtd~~R~~~~~~~~i~~~l~wlgl 70 (492)
.+.++|.+.=||+|.| |-| |-..||..++- ++ .-|.+.......+++...|+-.|.
T Consensus 3 ~~~~~~~~~~aP~~~g~Ys~-------------av~~g~~lyiSGq~~~~~~~~~~~~~~~~Q~~~~~~~l~~~L~~~g~ 69 (129)
T 1jd1_A 3 TTLTPVICESAPAAAASYSH-------------AMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNS 69 (129)
T ss_dssp CCEEEECCTTSCCCSSSCCS-------------EEEETTEEEEEEECSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCCCC-------------EEEECCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 65432648988988799889-------------79999999994656899984346887899999999989999998099
Q ss_pred CCCCC
Q ss_conf 88867
Q gi|255764513|r 71 NWDEG 75 (492)
Q Consensus 71 ~~De~ 75 (492)
++|.-
T Consensus 70 ~~~~i 74 (129)
T 1jd1_A 70 SLDRV 74 (129)
T ss_dssp CGGGE
T ss_pred CHHHE
T ss_conf 97997
No 74
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 2pg5_A* 2pg7_A* 2pg6_A* 3ebs_A* 2p85_A*
Probab=28.93 E-value=25 Score=14.28 Aligned_cols=59 Identities=20% Similarity=0.390 Sum_probs=37.6
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHH----HHHHH--HHHHCCCEEEEEECCCCCC-CCCHHHHHHHH
Q ss_conf 877056348433887850159999----99999--9997188499997048666-38867999999
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAYTA----LFNYL--IAKRTGGKFILRIEDTDSK-RSTLESENAVM 62 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~rta----l~n~l--~a~~~~g~f~lRieDtd~~-R~~~~~~~~i~ 62 (492)
.++-+-++.|.|.|..=+|++... .++++ .++++|..|-+||=.+..- =+.++.+..|+
T Consensus 4 ~~~~~~~lPPgP~~~P~~G~~~~~~~~~~~~~~~~~~~kyG~v~~~~i~~~~~vvv~dp~~ik~vl 69 (476)
T 2fdv_A 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREAL 69 (476)
T ss_dssp ----CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHH
T ss_conf 889999789899996850206663875589999999998599899997993299988999999999
No 75
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A*
Probab=28.91 E-value=7 Score=18.03 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHH
Q ss_conf 48986788764444444311223543024788999998510000010145553110132212234330245666297737
Q gi|255764513|r 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPE 275 (492)
Q Consensus 196 ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPe 275 (492)
|.=.|-...-.-..-+|.-||--+++.=||--=.+.+ .|+|+||+.|++=...|..=|-.++.. ++
T Consensus 136 ~~~~F~~~LA~rvFp~TqyIR~~~~~~YtpEPDi~HE-------l~GHvPlLadp~fA~f~q~~G~~~l~a-------~~ 201 (301)
T 1mlw_A 136 SPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHE-------LLGHVPLLAEPSFAQFSQEIGLASLGA-------SE 201 (301)
T ss_dssp CHHHHHHHHTTTEEEECCCCCCTTCTTCCSSCCHHHH-------HHHTHHHHTSHHHHHHHHHHHHHHTTC-------CH
T ss_pred CHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC-------CCCCCHHCCCHHHHHHHHHHHHHHHCC-------CH
T ss_conf 8789999984681055223368998887899940004-------423352007989999999998987537-------89
Q ss_pred HHHHHHHHCCCC
Q ss_conf 799899850676
Q gi|255764513|r 276 ALINFLALLFVH 287 (492)
Q Consensus 276 AilNyLalLGws 287 (492)
.-+.+|++|=|-
T Consensus 202 e~i~~LarlYWf 213 (301)
T 1mlw_A 202 EAVQKLATCYFF 213 (301)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHEE
T ss_conf 999998653234
No 76
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=27.97 E-value=7.4 Score=17.85 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHH
Q ss_conf 48986788764444444311223543024788999998510000010145553110132212234330245666297737
Q gi|255764513|r 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPE 275 (492)
Q Consensus 196 ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPe 275 (492)
|.=.|-...-....-+|.-||--+++.=||--=.+.+ .|+|+||+.+++=...|..=|-+++.. . +
T Consensus 148 ~~rdF~~~LA~RvF~~TqyIRh~~~p~YtpEPDi~HE-------l~GHvPlLadp~fA~f~q~iG~asl~a------~-d 213 (325)
T 1j8u_A 148 SSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHE-------LLGHVPLFSDRSFAQFSQEIGLASLGA------P-D 213 (325)
T ss_dssp CHHHHHHHHHTTEEEECCCCCCTTCTTCCSSCCHHHH-------HHHTHHHHTSHHHHHHHHHHHHHHTTC------C-H
T ss_pred CHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHH-------HHCCCCCCCCHHHHHHHHHHHHHHHCC------C-H
T ss_conf 8899999985780045233268887887899951555-------545562217999999999998976458------8-8
Q ss_pred HHHHHHHHCCC
Q ss_conf 79989985067
Q gi|255764513|r 276 ALINFLALLFV 286 (492)
Q Consensus 276 AilNyLalLGw 286 (492)
.-+.+|++|=|
T Consensus 214 e~i~~LarlYW 224 (325)
T 1j8u_A 214 EYIEKLATIYW 224 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHEEE
T ss_conf 79998643203
No 77
>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin, bacterial enzyme; HET: HBI; 1.40A {Chromobacterium violaceum} SCOP: d.178.1.1 PDB: 1ltv_A 1ltu_A*
Probab=27.91 E-value=8.3 Score=17.54 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHH
Q ss_conf 86788764444444311223543024788999998510000010145553110132212234330245666297737799
Q gi|255764513|r 199 HLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALI 278 (492)
Q Consensus 199 ~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAil 278 (492)
.|-.-.-.-..-+|.-||-.+++.=||--=.+.+ .|+|+|++.|++=...+..-|..++.. ..+.-+
T Consensus 106 ~Ff~~LA~r~Fp~t~~IR~~~~~~YtpEPDifHe-------~~GHvP~Lanp~fAdf~q~~G~~~l~a------~~~~~l 172 (297)
T 1ltz_A 106 VFFEHLANRRFPVTWWLREPHQLDYLQEPDVFHD-------LFGHVPLLINPVFADYLEAYGKGGVKA------KALGAL 172 (297)
T ss_dssp HHHHHHHTTEEEEECSCCCTTCSSSCCSCCHHHH-------HHHTGGGGGSHHHHHHHHHHHHHHHHC------CSTTHH
T ss_pred HHHHHHHCCEECCCCEECCCCCCCCCCCCCCHHC-------CCCCCCCCCCHHHHHHHHHHHHHHHCC------CCHHHH
T ss_conf 9999985582145233158764566889941320-------002464203889999999997777155------889999
Q ss_pred HHHHHCCCC
Q ss_conf 899850676
Q gi|255764513|r 279 NFLALLFVH 287 (492)
Q Consensus 279 NyLalLGws 287 (492)
.+|++|=|-
T Consensus 173 ~~L~rlyWf 181 (297)
T 1ltz_A 173 PMLARLYWY 181 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHEEEE
T ss_conf 863124568
No 78
>1avy_A Fibritin, gpwac M; coiled coil, bacteriophage T4, structural protein, chaperone, bacteriophage assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.48 E-value=12 Score=16.38 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.0
Q ss_pred CCHHHHHHCCCCHHH
Q ss_conf 302456662977377
Q gi|255764513|r 262 TSISYYSAMGYLPEA 276 (492)
Q Consensus 262 ~~i~~~~~~GylPeA 276 (492)
.+|+.+++.||.|||
T Consensus 36 ~dvqalqEAGYIpeA 50 (74)
T 1avy_A 36 GDVQALQEAGYIPEA 50 (74)
T ss_dssp HHHHHHHHTCCCCCC
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 889999983888779
No 79
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=26.88 E-value=8 Score=17.64 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 886799999999886589888
Q gi|255764513|r 53 STLESENAVMQSLKWCGLNWD 73 (492)
Q Consensus 53 ~~~~~~~~i~~~l~wlgl~~D 73 (492)
...++.-.+++.++-.|++--
T Consensus 43 d~vGsLaraLkvFe~~~INLt 63 (429)
T 1phz_A 43 EEVGALAKVLRLFEENDINLT 63 (429)
T ss_dssp CCTTHHHHHHHHHHTTTCCTT
T ss_pred CCCCHHHHHHHHHHHCCCEEE
T ss_conf 761589999999998693699
No 80
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=25.43 E-value=29 Score=13.86 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=15.9
Q ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 245148899977668876643100023665557883330011
Q gi|255764513|r 107 AFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERL 148 (492)
Q Consensus 107 aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~ 148 (492)
.|+-+||+|+|+.+|.. |.-|.-.++|--+|+++++++
T Consensus 62 I~~~~Ct~eQL~~Lk~~----gaip~~~~~CgLItk~DaerL 99 (106)
T 1sbx_A 62 IYCSRCTADQLEILKVM----GILPFSAPSCGLITKTDAERL 99 (106)
T ss_dssp CCCEECCHHHHHHHHHT----TSSCTTCCCCEEEEHHHHHHH
T ss_pred CEECCCCHHHHHHHHHC----CCCCCCCCCCCCEEHHHHHHH
T ss_conf 35422799999999976----998999875364558999999
No 81
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, pterin CO-substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A*
Probab=25.21 E-value=9 Score=17.30 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHH
Q ss_conf 48986788764444444311223543024788999998510000010145553110132212234330245666297737
Q gi|255764513|r 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPE 275 (492)
Q Consensus 196 ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPe 275 (492)
|.=.|-...-.-..-+|.-||-.+++.=||--=.+.+ .|+|+||+.+++=...|-.=|-.++. .. +
T Consensus 141 ~~r~F~~~LA~RvFp~TqyIRh~~~p~YtpEPDi~HE-------l~GHvPlLadp~fA~f~q~iG~asl~------a~-d 206 (343)
T 1toh_A 141 SARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHE-------LLGHVPMLADRTFAQFSQDIGLASLG------AS-D 206 (343)
T ss_dssp CHHHHHHHHTTTEEEECCCCCCTTCTTCCSSCCHHHH-------HHHTHHHHTSHHHHHHHHHHHHHHTT------CC-H
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH-------HHCCCCCCCCHHHHHHHHHHHHHHHH------CC-H
T ss_conf 8889999984385332533326888777899951555-------54546101899999999999999873------28-9
Q ss_pred HHHHHHHHCCCC
Q ss_conf 799899850676
Q gi|255764513|r 276 ALINFLALLFVH 287 (492)
Q Consensus 276 AilNyLalLGws 287 (492)
.-+..|++|=|-
T Consensus 207 e~i~~LarlYWf 218 (343)
T 1toh_A 207 EEIEKLSTVYWF 218 (343)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHEE
T ss_conf 999998551235
No 82
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=24.73 E-value=30 Score=13.78 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 330245666297737799899850676
Q gi|255764513|r 261 PTSISYYSAMGYLPEALINFLALLFVH 287 (492)
Q Consensus 261 ~~~i~~~~~~GylPeAilNyLalLGws 287 (492)
.--|..+.++||.-++.+.-|..-+|.
T Consensus 164 ~~~v~~~~~~g~~~~~~~~~l~~~~~~ 190 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWD 190 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 889999998598778999999867966
No 83
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=24.61 E-value=30 Score=13.76 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=28.3
Q ss_pred CEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 824514889997766887664310002366555788333001120
Q gi|255764513|r 106 LAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQ 150 (492)
Q Consensus 106 ~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~ 150 (492)
..|+-+||+|+|+.+|.. |.-|.--++|--+|+++.+++..
T Consensus 56 ~I~~~~Ct~eQl~~Lk~~----gaip~~~~~C~LItk~DaErLy~ 96 (101)
T 1l8r_A 56 EITPVVCNVEQVRILRGL----GAIQPGVNRCKLISRKDFETLYN 96 (101)
T ss_dssp TCCCEECCHHHHHHHHHH----TSSCTTCCCCEEEEHHHHHHHHH
T ss_pred CCEECCCCHHHHHHHHHC----CCCCCCCCCCCCEEHHHHHHHHH
T ss_conf 823322899999999976----99899987535522889999987
No 84
>3eq5_A SKI-like protein; TGF-beta, alternative splicing, coiled coil, polymorphism, signaling protein, structural genomics, SGC stockholm; 2.45A {Homo sapiens}
Probab=24.52 E-value=26 Score=14.18 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 0247889999985100000101455531101322
Q gi|255764513|r 222 SSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKL 255 (492)
Q Consensus 222 ~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~kl 255 (492)
.-||.|+.+.+.+|.=+|.-.+..||...|-.+|
T Consensus 83 ~Ct~eQL~~LK~~Gaip~sa~~CgLItk~DaErL 116 (125)
T 3eq5_A 83 RCTSDQLHILKVLGILPFNAPSCGLITLTDAQRL 116 (125)
T ss_dssp ECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHH
T ss_conf 1699999999976988999884245318999999
No 85
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=23.90 E-value=31 Score=13.68 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCC---CCCCCCCCCCC
Q ss_conf 32628999999999998898245148899977668876643100---02366555788
Q gi|255764513|r 87 QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIP---SRYDGHCLKLS 141 (492)
Q Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~---~~Y~~~~r~l~ 141 (492)
.|+.+..+.+-+-+|.+-...|.|--|+||.+.+++...+.|.- ..|++.+.+.+
T Consensus 25 l~~~v~~~v~~~~~l~~P~~i~~~dgS~ee~~~l~~~~~~~g~~~~L~~~~~~~~~~s 82 (624)
T 3moe_A 25 LPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALT 82 (624)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCEEEEC
T ss_conf 8999999999999854998899918999999999999986378142578998476107
No 86
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=23.63 E-value=31 Score=13.64 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=45.3
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HCCCCCCCCCCCCH
Q ss_conf 0045324898678876444444431122---354302478899999851000001014555311--01322122343302
Q gi|255764513|r 190 LKSDGMPTYHLANVIDDHLMKITHVARG---EEWISSVPKHILLYQYFNFPIPEFIHLPLIKNP--DKSKLSKRRNPTSI 264 (492)
Q Consensus 190 ~r~dg~ptY~~a~vvDD~~m~ithviRg---~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~--~g~klSKR~~~~~i 264 (492)
++.+=.|+|++..|+.- |-..+.- +|-+...+.+. +-.+...|...--.... -+...++++...-+
T Consensus 149 l~~~Wsp~~ti~~vL~s----I~slL~~Pn~ddP~n~eaa~~-----y~~n~~~f~~~ar~~t~~yA~~~~~~~~~~~~~ 219 (253)
T 3e46_A 149 LKDQWAAAMTLRTVLLS----LQALLAAAEPDDPQDAVVANQ-----YKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKI 219 (253)
T ss_dssp GTTCCCTTCCHHHHHHH----HHHHHHSCCTTSCSCHHHHHH-----HHHCHHHHHHHHHHHHHHHHCCSCCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH----HHHHHCCCCCCCCHHHHHHHH-----HHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 45788987849999999----999980899898446999999-----998999999999999999758977784166889
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 45666297737799899850676
Q gi|255764513|r 265 SYYSAMGYLPEALINFLALLFVH 287 (492)
Q Consensus 265 ~~~~~~GylPeAilNyLalLGws 287 (492)
+.+.++||..++.+..|..-+|.
T Consensus 220 ~~~~~~gf~~~~~~~~L~~~~w~ 242 (253)
T 3e46_A 220 ENLCAAGFDRNAVIVALSSKSWD 242 (253)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 99998487666899999875875
No 87
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=23.60 E-value=31 Score=13.64 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=31.3
Q ss_pred CCCHHHHH-HCCCCHHHHHHHHHHCCCCCCCCCHHHCC-HHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 33024566-62977377998998506766655301101-4677765202113755442015655664
Q gi|255764513|r 261 PTSISYYS-AMGYLPEALINFLALLFVHKSEDDDELMD-MQQLIHHFDLHHLSKAGAVFDKQKLDWL 325 (492)
Q Consensus 261 ~~~i~~~~-~~GylPeAilNyLalLGws~~~~d~Eifs-l~eli~~FdL~~I~Ks~A~FD~eKL~wl 325 (492)
.++|.+.. .-|+.++-|++-|-.||.=.....+-+.. -.++++.. .+...|....+|+++|.|.
T Consensus 212 ~isi~dis~~T~i~~~Dii~tL~~l~~l~~~~~~~~i~~~~~~~~~~-~~~~~k~~~~id~~~L~W~ 277 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTLSEDIVDGH-ERAMLKRLLRIDSKCLHFT 277 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTTCCCBCSSSBBC-------------------CCCCGGGBCCC
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHHCCCEEEECCEEEEEECHHHHHHH-HHHHCCCCCEECCHHCEEC
T ss_conf 38699998873988999999999779789979948999799999999-9971589868841006235
No 88
>2npt_A Dual specificity mitogen-activated protein kinase kinase 5; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=23.54 E-value=31 Score=13.63 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCCCCEEEEEECCCCEEECC----------CCC--CCC-------EECC-CCCCCCCCEECCCC----CHHHHHHHHHH
Q ss_conf 25774078862243114304----------751--340-------2136-43235641000453----24898678876
Q gi|255764513|r 151 EQKKHVVRLTVPNQGSCVFQ----------DKV--YGE-------MEIP-WNAVDMQVLLKSDG----MPTYHLANVID 205 (492)
Q Consensus 151 ~g~~~~iR~k~p~~~~~~~~----------D~i--~G~-------~~~~-~~~~~D~vi~r~dg----~ptY~~a~vvD 205 (492)
..++-|||+++|+.+.+-|. |.+ -|. -.|. .++-+|-|-+|||. +-.|+++.+-.
T Consensus 11 ~~q~lVIRI~~~~~~~vDw~V~~~~~l~F~dvL~~i~q~~p~at~taFEYEDEdGDRITVRSDEEl~AMisyy~~~~~e 89 (106)
T 2npt_A 11 ENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYYYSTVME 89 (106)
T ss_dssp --CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEEEECTTSCEEEECSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 0275699998588862654534886433999999999866245553214204658876872679999999999999999
No 89
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=22.88 E-value=32 Score=13.54 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHH
Q ss_conf 2628999999999998898245148899977668876643100---0236655578833
Q gi|255764513|r 88 SERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIP---SRYDGHCLKLSSQ 143 (492)
Q Consensus 88 S~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~---~~Y~~~~r~l~~~ 143 (492)
++.+..+.+-+-+|.+-...|.|.-|+||.+.+|+...+.|.- +.|++...+.+..
T Consensus 9 ~~~~~~~v~e~~~l~~P~~I~icdGS~ee~~~l~~~~~~~g~~~~L~~~~n~~l~~sdp 67 (608)
T 2faf_A 9 PAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDP 67 (608)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECTTSBSCEEECCCT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCH
T ss_conf 89999999999986399879993899999999999999738856577899967851884
No 90
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=22.63 E-value=32 Score=13.51 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCE---EEEEEECCCCCCCH
Q ss_conf 486679999999999-8405888998889999999999957982331012---67889648888889
Q gi|255764513|r 394 LCPEEIIDILKTTQE-EFEVIQIWKRENIETALRNVAQHREKSLKIIVKP---LFLAITGSKYSLPL 456 (492)
Q Consensus 394 ~~~e~~~~iL~~~~~-~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~P---LRiALTG~~~GP~L 456 (492)
+..+....+++..++ .|.+ ..++.+....+.+.+++...-+.+++..| +=.+..|...|.++
T Consensus 10 F~~~~v~~Ii~~~l~~~L~~-~~Y~~~~~~~~~~~i~~~i~~~lk~l~~ryK~vv~v~I~q~~gqgi 75 (111)
T 1ygt_A 10 FIVDDVSKTIKEAIETTIGG-NAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGL 75 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEEEECSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCC
T ss_conf 38899999999999997688-9889699999999999999999985189937999999996379642
No 91
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Probab=21.56 E-value=34 Score=13.37 Aligned_cols=11 Identities=18% Similarity=0.142 Sum_probs=5.7
Q ss_pred CCCCCCEECCC
Q ss_conf 75134021364
Q gi|255764513|r 171 DKVYGEMEIPW 181 (492)
Q Consensus 171 D~i~G~~~~~~ 181 (492)
-.|||-+..+.
T Consensus 83 g~vRg~~~~~~ 93 (291)
T 1vzy_A 83 GEVRAYVSNPQ 93 (291)
T ss_dssp SEEEEEESCCC
T ss_pred CCEEEEEECCC
T ss_conf 90799984742
No 92
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Probab=21.37 E-value=10 Score=16.88 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHH
Q ss_conf 98678876444444431122354302478899999851000001014555311013221223433024566629773779
Q gi|255764513|r 198 YHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277 (492)
Q Consensus 198 Y~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAi 277 (492)
=.|-...-+-..-+|.-||..+++.=||--=.+.+ .|+|+|++.|+.=...+.+-|.+++.. ..+.
T Consensus 89 ~~Ff~~LA~r~Fp~t~~IR~~~~~~YtpEPDifHe-------~fGH~PlL~~p~fA~f~~~~G~~~~~a------~~~~- 154 (275)
T 2v27_A 89 GEFFRLLSEKKFPVATFIRSREEMDYLQEPDIFHE-------IFGHCPLLTNSSFANYTEAYGKMGLNA------TKEQ- 154 (275)
T ss_dssp HHHHHHHHTTEEEEECCCCCSTTTTCCSSCCHHHH-------HHHTGGGGGSHHHHHHHHHHHHHHTTC------CHHH-
T ss_pred HHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHC-------CCCCCHHHCCHHHHHHHHHHHHHHHCC------CHHH-
T ss_conf 99999985681045243268875667899961003-------314231207999999999999988625------8778-
Q ss_pred HHHHHHCCCC
Q ss_conf 9899850676
Q gi|255764513|r 278 INFLALLFVH 287 (492)
Q Consensus 278 lNyLalLGws 287 (492)
+.+|++|=|-
T Consensus 155 ~~~L~rlyWf 164 (275)
T 2v27_A 155 RVFLARLYWF 164 (275)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHEEEE
T ss_conf 9986543267
No 93
>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1mja_A* 1mjb_A* 1mj9_A*
Probab=20.98 E-value=34 Score=13.35 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=12.9
Q ss_pred HCCCEEECC------CCHHHHHHHHHH
Q ss_conf 889824514------889997766887
Q gi|255764513|r 103 EKKLAFRCF------CSTERLEEMRRA 123 (492)
Q Consensus 103 ~~g~aY~c~------~t~eel~~~r~~ 123 (492)
+.+..|-|- .+++++...+..
T Consensus 34 ~~~~lyiCe~Clky~~~~~~~~~H~~~ 60 (278)
T 1fy7_A 34 DEDFIYIDDFTLQYFGSKKQYERYRKK 60 (278)
T ss_dssp SCCEEEECTTTCCEESSHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 898699840457701888999999975
No 94
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductase, heme; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=20.73 E-value=35 Score=13.26 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=40.2
Q ss_pred CCCEEEECCCCCCCCCCHHHHH----HHH--HHHHHHHHCCCEEEEEECCCCCC-CCCHHHHHHHHH
Q ss_conf 8770563484338878501599----999--99999997188499997048666-388679999999
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAY----TAL--FNYLIAKRTGGKFILRIEDTDSK-RSTLESENAVMQ 63 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~r----tal--~n~l~a~~~~g~f~lRieDtd~~-R~~~~~~~~i~~ 63 (492)
+|.-|-|+.|.|.|..=||++. -.+ +-.-+++++|..|-+|+=.++.= =+.++.+..|+.
T Consensus 5 ~~~~~~~lpPGP~~~P~lG~~~~~~~~~~~~~~~~~~~kyG~if~~~~g~~~~vvv~dpe~i~~vl~ 71 (477)
T 1r9o_A 5 TSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALI 71 (477)
T ss_dssp ----CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHH
T ss_conf 8999998996989978503578868756999999999983998999978900999899999999998
Done!