RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>gnl|CDD|30358 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 439 bits (1129), Expect = e-123
Identities = 184/484 (38%), Positives = 262/484 (54%), Gaps = 29/484 (5%)
Query: 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQ 63
+ VR R APSPTG HIG A TAL NYL A++ GGKFILRIEDTD +R T E+E+A+++
Sbjct: 7 TVGVRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILE 66
Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
L+W GL+WDEGP Y QSER +IY Y + L+EK A+ C+C+ E LEEMR
Sbjct: 67 DLEWLGLDWDEGP--------YYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMREL 118
Query: 124 QRKRN-IPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVP-NQGSCVFQDKVYGEMEIPW 181
+ P YD L+ E E VVRL +P VF+D V G +
Sbjct: 119 RGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAP 178
Query: 182 NAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEF 241
D V+L+ DG PTY+ A V+DDHLM ITHV RGE+ + + P+ I LY+ +P P +
Sbjct: 179 KHPD-FVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVY 237
Query: 242 IHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL 301
HLPL+ N D KLSKR+ SI Y G+LP AL N LALL + E+ +++
Sbjct: 238 AHLPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEG 297
Query: 302 IHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEK--------DRL 353
I FDL +SK+ A FD++KLDWLN R++R + + ++E+ +
Sbjct: 298 IKWFDLTIVSKSPAAFDRKKLDWLNPRYMRV-DPVEVVIENLKPHLEEEGATLPLNPEMG 356
Query: 354 TQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVI 413
+ + L + TL + ++ F F+ E + L + ++L+ E
Sbjct: 357 ERVVPLTKE---TLIEIERLDFFFFEDK-----EEVRLKRLANVIVAEVLEKDAEGLITS 408
Query: 414 QIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLR 473
W +ENI ++ VA+ + PL +A+TG L D+IE+LG+ V + RL
Sbjct: 409 D-WTKENIIHWVKAVARLFGVKGPKLFPPLRVALTGGYVEPELADTIELLGKEVQFERLG 467
Query: 474 HAIA 477
+A+A
Sbjct: 468 YALA 471
>gnl|CDD|36364 KOG1149, KOG1149, KOG1149, Glutamyl-tRNA synthetase (mitochondrial)
[Translation, ribosomal structure and biogenesis].
Length = 524
Score = 406 bits (1044), Expect = e-114
Identities = 197/494 (39%), Positives = 283/494 (57%), Gaps = 30/494 (6%)
Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
++ VRVR APSPTG H+G TALFNYL A++ GGKFILRIEDTD KR SE A+
Sbjct: 30 FAACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIY 89
Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
+ LKW L+WDEGP +GG +GPY QSER IY+ Y + LLE A+RCFCS ERL+ +R+
Sbjct: 90 EDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRK 149
Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
+ K++ RYD C LS EI++ + +R +P + S F D VYG ++ N
Sbjct: 150 SALKKHEIPRYDRKCANLSDAEIKQKLAKGTPFTIRFRLPKE-SPPFTDLVYG--KVNHN 206
Query: 183 AVDMQ---VLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP 239
+ V++KSDG PTYH ANV+DDHLM I+HV RGEEW+ S KHILLY+ F + P
Sbjct: 207 VDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPP 266
Query: 240 EFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQ 299
+F HLPL+ NPD SKLSKR+ S+S+Y GYLPEAL+N++A L ++E ++
Sbjct: 267 KFAHLPLLLNPDGSKLSKRQGDASVSHYREQGYLPEALLNYIA-LLGWGFRTENEFFSLE 325
Query: 300 QLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIR---EKLST-TEFLSRVSQWMKE------ 349
+LI F + L+K+ A+ D +KL +LN ++ S E + ++ +KE
Sbjct: 326 ELIEQFSIERLTKSNAILDSEKLRFLNRLHLQRLISNESKLRELVDKLQPLLKEAYGTSS 385
Query: 350 ----KDRLTQALTLAQSRITTLSALPQMTDFLFK--SDLH-LTAESFKSTALCPEEIIDI 402
K+ L L L + L L F F SD + ++ A ++ I
Sbjct: 386 DNEAKEVLKDILLLVTGSLKRLQDLLSELSFFFTRPSDKQAVEDLLSENVASLIAHLLKI 445
Query: 403 LKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEI 462
L + E E + ++L+ A+ ++ LK ++K L +A++G P+ + IE+
Sbjct: 446 LNPSALELEQDE------WNSSLKAFAKEHQRKLKKLMKLLRVALSGKLPGPPIAEMIEL 499
Query: 463 LGRSVVYFRLRHAI 476
LG+ V RL+ +
Sbjct: 500 LGKKEVEERLKELL 513
>gnl|CDD|144374 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 397 bits (1023), Expect = e-111
Identities = 145/323 (44%), Positives = 187/323 (57%), Gaps = 13/323 (4%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
KVR R APSPTG HIG A TALFNYL AK GKFILR +DTD +R E E ++++ L
Sbjct: 1 KVRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDL 60
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
KW G+ WDE P Y QS+R +IY Y + L+EK LA+ CFC+ E LEE R Q
Sbjct: 61 KWLGIKWDEKP--------YYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQE 112
Query: 126 KRNIPS--RYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNA 183
P RYD CL+L +E+ + E K +R +P + V +D V G ++ +A
Sbjct: 113 ALGSPERPRYDEECLRLFEEEMRKGEAEGGKATLRFKIPMESPYVMRDLVRGRIKFEPSA 172
Query: 184 VDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIH 243
+ + LK DG PTY A VIDD +M ITHV RGEE + + PK I +YQ + +P FIH
Sbjct: 173 LHDRTGLKWDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIH 232
Query: 244 LPLIKNPDKSKLSKRRNPTS--ISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL 301
L N D +KLSKR+ S IS G PEAL+NFL E E ++L
Sbjct: 233 EYLRLNLDGTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWT-PEGIREFFTREEL 291
Query: 302 IHHFDLHHLSKAGAVFDKQKLDW 324
I FDL+ +SK+ FD++KLDW
Sbjct: 292 IKSFDLNRVSKSLEAFDRKKLDW 314
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 242 bits (620), Expect = 2e-64
Identities = 87/145 (60%), Positives = 106/145 (73%), Gaps = 2/145 (1%)
Query: 189 LLKS-DGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLI 247
LL+ DG PTYHLANV+DDHLM ITHV RGEE +SS PK ILLY+ + P+F HLPLI
Sbjct: 96 LLEKGDGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLI 155
Query: 248 KNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDL 307
NPD KLSKR+ TSIS Y GYLPEAL+N+LALL D +E +++LI FDL
Sbjct: 156 LNPDGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWS-PPDGEEFFTLEELIELFDL 214
Query: 308 HHLSKAGAVFDKQKLDWLNGRWIRE 332
+SK+ A+FD +KLDWLNG++IRE
Sbjct: 215 ERVSKSPAIFDPEKLDWLNGQYIRE 239
Score = 190 bits (485), Expect = 8e-49
Identities = 68/100 (68%), Positives = 80/100 (80%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
KVR R APSPTG HIG A TALFNYL A++ GGKFILRIEDTD +RS E+E A++++L
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKK 105
KW GL+WDEGPD+GG YGPYRQSER IY+ Y + LLEK
Sbjct: 61 KWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG 100
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 169 bits (429), Expect = 2e-42
Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 189 LLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIK 248
L+K G P Y+ + +DD LM ITHV RGE+ + + P LY+ + P F H P +
Sbjct: 88 LIKKGGYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLL 147
Query: 249 NPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLH 308
D +KLSKR+ T++ GYLPEAL N+LAL+ K + + ++++I F +
Sbjct: 148 LEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFT-LEEMIAAFSVE 206
Query: 309 HLSKAGAVFDKQKLDWLNGRWIRE 332
++ A A FD KL+WLN +IRE
Sbjct: 207 RVNSADATFDWAKLEWLNREYIRE 230
Score = 133 bits (336), Expect = 1e-31
Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 8/99 (8%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
V R APSPTG HIG A TALFN+ A++ GGKFILRIEDTD +RS E ++++ L
Sbjct: 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDL 60
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEK 104
KW GL+WDE GPYRQS+R ++Y+ Y + L++K
Sbjct: 61 KWLGLDWDE--------GPYRQSDRFDLYRAYAEELIKK 91
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 85.9 bits (213), Expect = 3e-17
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRST--LESENAVMQ 63
KV +R AP+P G H+G A A+ N AK GGKFILR +DTD + E+ + + +
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAF 108
L+W G+ WDE S+R +Y Y + L+E A+
Sbjct: 61 DLEWLGVKWDE---------VVIASDRIELYYEYARKLIEMGGAY 96
Score = 62.4 bits (152), Expect = 3e-10
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPD---- 251
PT + A +DDHL+ +THV RG++ I + K +Y+YF + PE IH +K
Sbjct: 109 PTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168
Query: 252 KSKLSKR------------RNPTSISYYSAMGYLPEALINFL 281
SK+ K R PT + G PEA+ +F+
Sbjct: 169 TSKIRKGIESGEYEGWDDPRLPT-LRALRRRGIRPEAIRDFI 209
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Gln to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
GlnRS contains the characteristic class I HIGH and
KMSKS motifs, which are involved in ATP binding. These
enzymes function as monomers. Archaea and most bacteria
lack GlnRS. In these organisms, the
"non-discriminating" form of GluRS aminoacylates both
tRNA(Glu) and tRNA(Gln) with Glu, which is converted to
Gln when appropriate by a transamidation enzyme.
Length = 238
Score = 63.8 bits (156), Expect = 1e-10
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
KV R P P G HIG A L N+ AK+ GG+ LR +DT+ ++ E +++ + +
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 66 KWCGLNWD 73
KW G+
Sbjct: 61 KWLGIKPY 68
Score = 31.1 bits (71), Expect = 0.65
Identities = 33/133 (24%), Positives = 45/133 (33%), Gaps = 36/133 (27%)
Query: 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF----NFPIP---EFIHLPLIK 248
PTY A+ I D + ITH E+ P Y + P EF L
Sbjct: 107 PTYDFAHPIVDSIEGITHSLCTLEFEDRRP----SYYWLCDALRLYRPHQWEFSRL---- 158
Query: 249 NPDKSKLSKR-----------------RNPTSISYYSAMGYLPEALINFLALLFVHKSED 291
N + +SKR R PT + G PEA+ F+ V K+
Sbjct: 159 NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPT-LRGLRRRGVTPEAIRQFILRQGVSKA-- 215
Query: 292 DDELMDMQQLIHH 304
D +D +L
Sbjct: 216 -DSTIDWDKLEAC 227
>gnl|CDD|36362 KOG1147, KOG1147, KOG1147, Glutamyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 712
Score = 58.5 bits (141), Expect = 4e-09
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 22/220 (10%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
KV R P P+G HIG A AL N A+ GK I+R +DT+ + E E+ +++ L
Sbjct: 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDL 259
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
G+ D Y I V+ + E K + E+M R +R
Sbjct: 260 SLLGIKPDR--------VTYTSDYFDEIMDYCVKLIKEGK----AYVDDTPTEQM-RDER 306
Query: 126 KRNIPSRYDGHCLKLSSQ---EIERLSQEQKKHVVR--LTVPNQGSCVFQDKVYGEMEIP 180
++ + S+ + ++ + + E+++ S++ K VR + + + + +Y P
Sbjct: 307 EQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRCNPEP 366
Query: 181 WNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEW 220
+ K PTY A I D L +TH R E+
Sbjct: 367 ----HHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEY 402
>gnl|CDD|36363 KOG1148, KOG1148, KOG1148, Glutaminyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 764
Score = 53.8 bits (129), Expect = 1e-07
Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 27/220 (12%)
Query: 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAV 61
+ KV R P P G HIG A N+ AK GG LR +DT+ ++ E ++
Sbjct: 244 RTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESI 303
Query: 62 MQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQP---YVQNLLEKKLAFRCFCSTERLE 118
+ + W G + PY+ + + + L+ K A+ C + E
Sbjct: 304 KEMVAWLG------------FEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAE--- 348
Query: 119 EMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQ---EQKKHVVRLTVP-NQGSCVFQDKV- 173
E++ + S + ++ S + E + E+ + +R+ G+ D V
Sbjct: 349 EIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGEATLRMKQDLESGNPQMWDLVA 408
Query: 174 YGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITH 213
Y +P + + PTY + + D L ITH
Sbjct: 409 YRIKNVPHPRTGDKWCI----YPTYDYTHCLVDSLENITH 444
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 31.8 bits (73), Expect = 0.46
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 34/93 (36%)
Query: 188 VLLKSDGMPTY-----------------HLANVID----DHLMKITHVARGEEWISSVPK 226
VL++SDG TY + V+ H ++ + +
Sbjct: 132 VLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYDEAKKL 191
Query: 227 HILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRR 259
LLY ++L P + K+S R
Sbjct: 192 EHLLYG--------MVNL-----PKEGKMSTRA 211
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I
amino acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding.
Length = 143
Score = 31.3 bits (71), Expect = 0.54
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 13 PSPTGEPHIGTAYTALFNYLIA-----KRTGGKFILRIEDTDSKR 52
+P G HIG T + +A + I I+D
Sbjct: 6 ITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLI 50
>gnl|CDD|38957 KOG3753, KOG3753, KOG3753, Circadian clock protein period [Signal
transduction mechanisms].
Length = 1114
Score = 29.7 bits (66), Expect = 1.7
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 250 PDKSKLSKRRNPTSI------SYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIH 303
+K + PT + + +GYLP+ LI L FVH ED ++ + Q +
Sbjct: 328 SNKRIFTTTHTPTCLFQHVDEAAVPLLGYLPQDLIGTSILAFVH-PEDRHVMVQIHQKVL 386
Query: 304 HFDLHHLSKAGAVFDKQKLDWL--NGRWIREKLSTTEFLSRVSQW 346
S VF + + NG ++R TE+ S V+ W
Sbjct: 387 Q------SGGKPVFSHSPIRFCAQNGSYVRLD---TEWSSFVNPW 422
>gnl|CDD|36801 KOG1588, KOG1588, KOG1588, RNA-binding protein Sam68 and related KH
domain proteins [RNA processing and modification].
Length = 259
Score = 29.3 bits (65), Expect = 2.5
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 94 YQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQK 153
YQP + K L+ E L E + P H +L +EIER+ +
Sbjct: 22 YQPQLNEKASKYLS-------ELLAERKSLSPFFPFP-----HAERLLDEEIERVQTSGR 69
Query: 154 KHVVRLTVPNQGSCVFQDK 172
+H + + V+ K
Sbjct: 70 QHGSKEPEELPYADVYSGK 88
>gnl|CDD|144868 pfam01430, HSP33, Hsp33 protein. Hsp33 is a molecular chaperone,
distinguished from all other known chaperones by its
mode of functional regulation. Its activity is redox
regulated. Hsp33 is a cytoplasmically localized protein
with highly reactive cysteines that respond quickly to
changes in the redox environment. Oxidising conditions
like H2O2 cause disulfide bonds to form in Hsp33, a
process that leads to the activation of its chaperone
function.
Length = 274
Score = 28.3 bits (64), Expect = 4.7
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 16/52 (30%)
Query: 103 EKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKK 154
+ + F C CS ER+ + L +E++ + +E K
Sbjct: 223 PQPVRFGCSCSRERVANALAS----------------LGKEELQDMIEEDGK 258
>gnl|CDD|31547 COG1356, COG1356, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 143
Score = 28.4 bits (63), Expect = 5.2
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 373 MTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNV 428
F ++ + + L EI ILKTT+ I+ ENIE A +
Sbjct: 3 TAMDTFLTEQQIKVLVLREKGLTQSEIARILKTTRANVSAIEKRALENIEKARNTL 58
>gnl|CDD|36658 KOG1445, KOG1445, KOG1445, Tumor-specific antigen (contains WD
repeats) [Cytoskeleton].
Length = 1012
Score = 28.1 bits (62), Expect = 5.9
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 137 CLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV 184
C +LS + +E ++ VP VFQD ++ + + W V
Sbjct: 883 CWRLSDKNLEPIT---------FRVPRIKKEVFQDDLFPDTLVTWEPV 921
>gnl|CDD|31632 COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism].
Length = 185
Score = 28.0 bits (62), Expect = 7.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 106 LAFRCFCSTERLEEM--RRAQRKRNIPSRYD----GHCLKLSSQE---IERLSQE 151
AF F ER + + RRA K+ P + H L S E RL+ E
Sbjct: 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYE 88
>gnl|CDD|29605 cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat shock), the Cys
are reversibly oxidized to disulfide bonds, which causes
the chaperone activity to be turned on. Hsp33 is
homodimeric in its functional form..
Length = 275
Score = 27.5 bits (61), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 98 VQNLLEKKLAFRCFCSTERLEEM 120
V+ L ++ + FRC CS ER+
Sbjct: 220 VRILEKQPVRFRCDCSRERVAAA 242
>gnl|CDD|146968 pfam04583, Baculo_p74, Baculoviridae p74 conserved region.
Baculoviruses are distinct from other virus families in
that there are two viral phenotypes: budded virus (BV)
and occlusion-derived virus (ODV). BVs disseminate viral
infection throughout the tissues of the host and ODVs
transmit baculovirus between insect hosts. GFP tagging
experiments implicate p74 as an ODV envelope protein.
Length = 250
Score = 27.2 bits (61), Expect = 9.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 265 SYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD-LHHL---SKAGAVFDKQ 320
+YY ++G LI FL F E+DDE + L+H D L L S + Q
Sbjct: 149 AYYESIGNGTRDLIEFLPEHFDDLVEEDDEYF-FESLLHILDYLASLEVNS------NGQ 201
Query: 321 KLDWLNG 327
L+ G
Sbjct: 202 LLNLDEG 208
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,020,586
Number of extensions: 320364
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 33
Length of query: 492
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 394
Effective length of database: 4,146,055
Effective search space: 1633545670
Effective search space used: 1633545670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)