RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (492 letters)



>gnl|CDD|179296 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
          Length = 476

 Score =  681 bits (1759), Expect = 0.0
 Identities = 221/482 (45%), Positives = 295/482 (61%), Gaps = 14/482 (2%)

Query: 3   SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
              KVR R APSPTG  HIG A TALFN+L A+  GGKFILRIEDTD +RST E+E A++
Sbjct: 1   MMMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAIL 60

Query: 63  QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
           + LKW GL+WDEGPD GG YGPYRQSER +IY+ Y + LLE+  A+ C+C+ E LE MR 
Sbjct: 61  EGLKWLGLDWDEGPD-GGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMRE 119

Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
            QR    P RYDG C  L+ +E+       +  V+R  VP++G  VF D V GE+E P +
Sbjct: 120 EQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNS 179

Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242
            +D  V+L+SDG PTY+ A V+DDHLM ITHV RGE+ +S+ PK ILLY+   + +P F 
Sbjct: 180 ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFA 239

Query: 243 HLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLI 302
           HLPLI  PD  KLSKR   TS+  Y  MGYLPEAL+N+LALL    S  D E+  +++LI
Sbjct: 240 HLPLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGW--SHGDQEIFSLEELI 297

Query: 303 HHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWM--------KEKDRLT 354
             FDL  +SK+ A FD +KLDWLNG +IRE L   E    +  W         ++   L 
Sbjct: 298 ELFDLERVSKSPARFDIKKLDWLNGHYIRE-LDPEELAELLLPWHLEQEGLDTEDGPYLE 356

Query: 355 QALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQ 414
           + + L + R  TL  L ++  F F+       ++ K      E   ++L+   E+ E ++
Sbjct: 357 KVVPLLKERAKTLKELAELARFFFEDFPEYDEDAAK--KHLKEVAREVLEALLEKLEALE 414

Query: 415 IWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRH 474
            W  E IE A++ VA+        +  PL +A+TG     PLF+S+E+LG+  V  RLR 
Sbjct: 415 EWTAEAIEAAIKAVAEELGLKGGKLFMPLRVALTGRTVGPPLFESMELLGKEEVLARLRK 474

Query: 475 AI 476
           A+
Sbjct: 475 AL 476


>gnl|CDD|161891 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
           The glutamyl-tRNA synthetases of the eukaryotic cytosol
           and of the Archaea are more similar to glutaminyl-tRNA
           synthetases than to bacterial glutamyl-tRNA synthetases.
           This alignment models just the bacterial and
           mitochondrial forms of the enzyme. In many species, the
           charging of tRNA(gln) proceeds first through
           misacylation with Glu and then transamidation. For this
           reason, glutamyl-tRNA synthetases may act on both
           tRNA(gln) and tRNA(glu). This model is highly specific.
           Proteins with positive scores below the trusted cutoff
           may be fragments rather than full-length sequences.
          Length = 470

 Score =  468 bits (1206), Expect = e-132
 Identities = 195/475 (41%), Positives = 284/475 (59%), Gaps = 20/475 (4%)

Query: 6   KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
           KVR R APSPTG  HIG A TALFNYL AK TGG+FILRIEDTD +R+  E+E A+++ L
Sbjct: 1   KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGL 60

Query: 66  KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
           KW G++WDEGP        Y QS+R +IY+ Y + LLE+ LA+RC+CS ERLE +R  Q+
Sbjct: 61  KWLGISWDEGP--------YYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQK 112

Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVD 185
                 RYDG C  L  +EIE    +    VVR  +P +    F D+V GE+    + +D
Sbjct: 113 ANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELD 172

Query: 186 MQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245
             V+L+SDG PTY+ A V+DD+LMKITHV RGE+ IS+ PK IL+YQ   + IP F HLP
Sbjct: 173 DFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLP 232

Query: 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHF 305
           +I + D  KLSKR   TSI  +   GYLPEALIN+LALL      DD E   +++LI  F
Sbjct: 233 MILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWS-PPDDQEFFSLEELIEIF 291

Query: 306 DLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEK--------DRLTQAL 357
            L+ +SK+ A FD +KL WLN  +I+E L   E    +   +K          ++L + L
Sbjct: 292 SLNRVSKSPAKFDWKKLQWLNAHYIKE-LPDEELFELLDPHLKSLVNTDTLNREQLAELL 350

Query: 358 TLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417
            L + R+ TL  + ++    F+    +  ++FK      + + ++L+  +++ + ++ W 
Sbjct: 351 LLFKERLKTLKEIAELIRLFFEDKKEVDEDAFKKHLK--KNVKEVLEALKKKLQALEEWT 408

Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRL 472
            + +++A++ +A+      K +  PL LA+TG  +   L   +E++G++    RL
Sbjct: 409 ADEVKSAIKQIAEELGLKGKKVFMPLRLALTGKGHGPDLAQILELIGKTESIKRL 463


>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
          Length = 535

 Score =  373 bits (959), Expect = e-104
 Identities = 158/356 (44%), Positives = 218/356 (61%), Gaps = 6/356 (1%)

Query: 3   SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
               VRVR APSPTG  H+G A TALFNYL A+  GGKF+LRIEDTD  RST ESE AV+
Sbjct: 42  KGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVL 101

Query: 63  QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
           + LKW GL+WDEGPD+GG YGPYRQSER  IY+ Y + LLE    + CFC+ E LE M+ 
Sbjct: 102 RDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKE 161

Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
               + +P RY G     S +E++    +   +  R  VP +GS    D + G  E+ WN
Sbjct: 162 EAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRG--EVSWN 219

Query: 183 AVDMQ--VLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240
              +   VLL+S+G P Y+    +DD  M ITHV R EE + +  +  L+Y+   FP+P 
Sbjct: 220 TDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPR 279

Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ 300
           F H+ LI  PD+SKLSKR   TS+  +  MGYLP+A++N+LALL  +    ++E+  +++
Sbjct: 280 FAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGT-ENEIFTLEE 338

Query: 301 LIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDRLTQA 356
           L+  F +  ++K+GAVFD  KL W+NG+ +R  L   E +  V +  K    L ++
Sbjct: 339 LVEKFSIDRINKSGAVFDSTKLKWMNGQHLR-LLPEEELVKLVGERWKSAGILKES 393


>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
          Length = 445

 Score =  247 bits (633), Expect = 5e-66
 Identities = 117/324 (36%), Positives = 168/324 (51%), Gaps = 12/324 (3%)

Query: 5   SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64
             V  R APSPTG  H+G A TAL N+L A++ GGKFILRI+DTD +RS  E  +A+ + 
Sbjct: 1   MTVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAED 60

Query: 65  LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124
           LKW G+NWD           +RQS+R + Y    + L      + C+ + E LE  R+ Q
Sbjct: 61  LKWLGINWDR---------TFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQ 111

Query: 125 RKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV 184
             R +P  YD   LKL+ +E   L  E +K   R  + +     + D + GE  I   ++
Sbjct: 112 LSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKL-DDEPISWDDLIRGEQSIDAASL 170

Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244
              VL+++DG   Y L +V+DD  M ITH+ RGE+ +++    I +++      P F HL
Sbjct: 171 SDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHL 230

Query: 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHH 304
            L+   D   LSKR    SI      G  P A+ + LA L    S+  +    M++L   
Sbjct: 231 SLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARL--GTSDPVEPYTSMEELAES 288

Query: 305 FDLHHLSKAGAVFDKQKLDWLNGR 328
           FDL   S+A A FD + L+ LN R
Sbjct: 289 FDLSSFSRAPAKFDPEDLERLNAR 312


>gnl|CDD|180216 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
          Length = 299

 Score =  229 bits (587), Expect = 1e-60
 Identities = 98/318 (30%), Positives = 146/318 (45%), Gaps = 26/318 (8%)

Query: 3   SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
           + +    R APSP+G  H G+   AL ++L A+  GG+++LRIED D  R    + +A++
Sbjct: 2   TMTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAIL 61

Query: 63  QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
             L+W GL+WD GP          QS+R + Y+  +  L  + L + CFCS  R E    
Sbjct: 62  ADLEWLGLHWD-GP-------VLYQSQRHDAYRAALDRLRAQGLVYPCFCS--RKEIAAA 111

Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
           A    +    Y G C  L       L   +     RL VP+     F D++ G       
Sbjct: 112 APAPPDGGGIYPGTCRDL-------LHGPRNPPAWRLRVPDAVIA-FDDRLQGRQHQDLA 163

Query: 183 AV--DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240
               D  VL ++DG+  Y LA V+DD L  +THV RG + + S P+ I L Q    P P 
Sbjct: 164 LAVGDF-VLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPR 222

Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDM-Q 299
           ++HLPL+ N D  KLSK+    ++            L   L  L       D  + ++  
Sbjct: 223 YLHLPLVLNADGQKLSKQNGAPAL----DAAGPLPVLAAALRFLGQPPPAADASVEELLA 278

Query: 300 QLIHHFDLHHLSKAGAVF 317
           Q + H+DL  L +   + 
Sbjct: 279 QAVAHWDLTRLPRQAEIN 296


>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
          Length = 513

 Score =  224 bits (573), Expect = 3e-59
 Identities = 130/328 (39%), Positives = 187/328 (57%), Gaps = 14/328 (4%)

Query: 4   SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQ 63
           ++ V  R APSPTG  HIG+A TALFNYL A+   GKF+LRIEDTD +RST E+  A+  
Sbjct: 2   NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFS 61

Query: 64  SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
            LKW GL+W+ G  I        QS+R N+Y+     LL+   A+ CF   E +E     
Sbjct: 62  GLKWLGLDWN-GEVI-------FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIER---- 109

Query: 124 QRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNA 183
           QR++ + ++           +   +     K V+RL  P +GS    D + GE+ I  + 
Sbjct: 110 QRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSH 169

Query: 184 VDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIH 243
           +D  VLL++DG  TY LA V+DDH M ITH+ RG++ +++  + + +YQ F + +P   H
Sbjct: 170 IDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTH 229

Query: 244 LPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIH 303
           +PLI   D +KLSKR     I  Y  MGYLPE+L N+  LL +  S  DDE++ M Q I 
Sbjct: 230 IPLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNY--LLRLGWSHGDDEIISMTQAID 287

Query: 304 HFDLHHLSKAGAVFDKQKLDWLNGRWIR 331
            F+L  L K+ +  D  K++ LN  ++R
Sbjct: 288 WFNLDSLGKSPSKLDFAKMNSLNAHYLR 315



 Score = 36.6 bits (84), Expect = 0.013
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 348 KEKDRLTQALTLAQSRITTLSALPQMTD-FLFKSDLHLTAESFKSTALCPEEIIDILKTT 406
           +E   + QA+     R  TL  L ++   +L  S +  + +S +    C + +I   K  
Sbjct: 388 QEIGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLI---KQI 444

Query: 407 QEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRS 466
            E    ++ + +E+++   + +A   +  L  I+KP+   ITG   S  +F+  EILG+ 
Sbjct: 445 IENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKE 504

Query: 467 VVYFRLR 473
            +  RL+
Sbjct: 505 NILKRLK 511


>gnl|CDD|183510 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
           Provisional.
          Length = 433

 Score =  222 bits (569), Expect = 1e-58
 Identities = 113/318 (35%), Positives = 174/318 (54%), Gaps = 17/318 (5%)

Query: 10  RIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCG 69
           R APSPTG+ HIG    A+FNY++AK+    F++RIEDTD +R+    +  +++ L   G
Sbjct: 3   RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFG 62

Query: 70  LNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNI 129
           ++WD+            QSE    ++   + LL +K AF CFCS E LE  +   +    
Sbjct: 63  ISWDK---------LVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKK 113

Query: 130 PSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVL 189
           P RYDG C  L   E+       K  VVRL  PN     F D + GE+    + +D  V+
Sbjct: 114 PYRYDGTCENLEDDEV---LNCNKPFVVRLKKPNHTMS-FTDAIKGEVSFEPDEIDSFVI 169

Query: 190 LKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP-EFIHLPLIK 248
           L++D  PTY+ A  +DD L  I+ + RGE+ +S+ PK IL+ +   +     + HLP+I 
Sbjct: 170 LRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIIL 229

Query: 249 NPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLH 308
           N +  K+SKR N +S+ +    G+LP A+ N+L LL     +   E+  +++ I  FD+ 
Sbjct: 230 NEEGKKMSKRDNASSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIE 286

Query: 309 HLSKAGAVFDKQKLDWLN 326
            +SK+ A FD +KL ++N
Sbjct: 287 KISKSPAKFDLKKLRFIN 304


>gnl|CDD|163550 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
            This protein resembles a shortened glutamyl-tRNA
           ligase, but its purpose is to modify tRNA(Asp) at a
           queuosine position in the anticodon rather than to
           charge a tRNA with its cognate amino acid.
          Length = 272

 Score =  205 bits (524), Expect = 2e-53
 Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 21/272 (7%)

Query: 7   VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
            R R APSP+G  H G+   AL +YL A+  GG++++RIED D  R    + + ++++L+
Sbjct: 1   YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60

Query: 67  WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
             GL+WD             QS+R  +YQ  +  LL   LA+ C C+ + +         
Sbjct: 61  AYGLHWDGEVV--------YQSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDG-- 110

Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN-AVD 185
                 Y G C          L +  +    RL VP+     F D++ G  +     AV 
Sbjct: 111 ---GGIYPGTC------RNGLLGRPARPAAWRLRVPDGVIA-FDDRLQGPQQQDLAAAVG 160

Query: 186 MQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245
             VL ++DG+  Y LA V+DD    ITHV RG + + S P+ I L +    P P ++HLP
Sbjct: 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLP 220

Query: 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277
           L+ N D  KLSK+    ++     +  L  AL
Sbjct: 221 LVVNADGEKLSKQNGAPALDLSHPLPALLAAL 252


>gnl|CDD|161890 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
           eukaryotic family.  The glutamyl-tRNA synthetases of the
           eukaryotic cytosol and of the Archaea are more similar
           to glutaminyl-tRNA synthetases than to bacterial
           glutamyl-tRNA synthetases. This alignment models just
           the eukaryotic cytosolic and archaeal forms of the
           enzyme. In some eukaryotes, the glutamyl-tRNA synthetase
           is part of a longer, multifunctional aminoacyl-tRNA
           ligase. In many species, the charging of tRNA(gln)
           proceeds first through misacylation with Glu and then
           transamidation. For this reason, glutamyl-tRNA
           synthetases may act on both tRNA(gln) and tRNA(glu).
          Length = 560

 Score =  119 bits (299), Expect = 2e-27
 Identities = 79/263 (30%), Positives = 119/263 (45%), Gaps = 30/263 (11%)

Query: 6   KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
           +V +R AP+P+G  HIG A  A+ N   AK+  GK I+R +DTD +R   E+ + +++ L
Sbjct: 93  EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDL 152

Query: 66  KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
            W G+  DE            QS+R   Y  Y + L+E   A+ C C  E   E+    R
Sbjct: 153 DWLGVKGDE---------VVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFREL----R 199

Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQK-------KHVVRL-TVPNQGSCVFQDKV-YGE 176
              +       C   S +E   + +E         K VVR  T     +   +D V +  
Sbjct: 200 NDGVAC----ACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRI 255

Query: 177 MEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236
            + P      +  +     PT   +  IDDHL+ +THV RG++ I +  K   +Y YF +
Sbjct: 256 NKTPHPRTGDKYKV----YPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGW 311

Query: 237 PIPEFIHLPLIKNPDKSKLSKRR 259
            +PEFIH   +K  D   LS   
Sbjct: 312 ELPEFIHWGRLKINDVRTLSTSS 334


>gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
          Length = 567

 Score =  106 bits (267), Expect = 1e-23
 Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 11/120 (9%)

Query: 6   KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD--SKRSTLESENAVMQ 63
           KV +R AP+P+G  H+G A  A+ N   AK  GGKFILR EDTD  +KR   E+ + +++
Sbjct: 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILE 160

Query: 64  SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
            LKW G+ WDE            QS+R  IY  Y + L+E   A+ C C  E  +E+R A
Sbjct: 161 DLKWLGVKWDE---------VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDA 211



 Score = 61.4 bits (150), Expect = 5e-10
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 23/104 (22%)

Query: 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPD---- 251
           PTY+ A  +DDHL+ +THV RG++ I +  K   +Y YF +  PE IH   +K       
Sbjct: 281 PTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLS 340

Query: 252 KSKLSKR------------RNPTSISYYSAM---GYLPEALINF 280
            SK+ K             R PT      A+   G LPEA+   
Sbjct: 341 TSKIRKGIEEGEYSGWDDPRLPT----LRALRRRGILPEAIREL 380


>gnl|CDD|173593 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
          Length = 601

 Score = 70.4 bits (172), Expect = 1e-12
 Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 40/268 (14%)

Query: 6   KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
           KV  R  P  +G  HIG A  AL N ++A +  GK + R +DT+  +     E A++  L
Sbjct: 52  KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDL 111

Query: 66  KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
              G++WD GP     Y         ++     + L++K LA   +C     EEM++  R
Sbjct: 112 ATLGVSWDVGPTYSSDY--------MDLMYEKAEELIKKGLA---YCDKTPREEMQKC-R 159

Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHV---------VRLTVPNQGSCVFQDKVYGE 176
              +P++Y      +S +E +RL  E KK            +++V N+   +    +Y  
Sbjct: 160 FDGVPTKYR----DISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRV 215

Query: 177 MEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236
              P      +   K    PTY     I D +  +TH  R  E+      H    QY+ F
Sbjct: 216 NLTP----HARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEY------HDRNDQYYWF 265

Query: 237 PIPEFIHLPLIK-----NPDKSKLSKRR 259
                I  P+++     N + S +SKR+
Sbjct: 266 CDALGIRKPIVEDFSRLNMEYSVMSKRK 293


>gnl|CDD|161880 TIGR00440, glnS, glutaminyl-tRNA synthetase.  This protein is a
           relatively rare aminoacyl-tRNA synthetase, found in the
           cytosolic compartment of eukaryotes, in E. coli and a
           number of other Gram-negative Bacteria, and in
           Deinococcus radiodurans. In contrast, the pathway to
           Gln-tRNA in mitochondria, Archaea, Gram-positive
           Bacteria, and a number of other lineages is by
           misacylation with Glu followed by transamidation to
           correct the aminoacylation to Gln. This enzyme is a
           class I tRNA synthetase (hit by the pfam model
           tRNA-synt_1c) and is quite closely related to
           glutamyl-tRNA synthetases.
          Length = 522

 Score = 61.5 bits (149), Expect = 5e-10
 Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 41/341 (12%)

Query: 7   VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
           V  R  P P G  HIG A +   N+  AK   G   LR +DT+  +   E   ++ + ++
Sbjct: 1   VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60

Query: 67  WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
           W G  W+        Y  + +  R      Y + L++K LA+    + E + E R     
Sbjct: 61  WLGFKWEGKIRYSSDY--FDELYR------YAEELIKKGLAYVDELTPEEIREYRGTLTD 112

Query: 127 RNIPSRYDGHCLKLSSQEIERLSQ---EQKKHVVRLTVP-NQGSCVFQDKVYGEMEIPWN 182
               S Y    ++ +    E++     ++ K ++R  +       V +D V   ++    
Sbjct: 113 PGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIK---F 169

Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITH-VARGEEWISSVPKHILLYQYFNFPIP-- 239
           A   Q   K    P Y   + I D +  ITH +   E   +      +L     FP P  
Sbjct: 170 APHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQ 229

Query: 240 -EFIHLPLIKNPDKSKLSKR-----------------RNPTSISYYSAMGYLPEALINFL 281
            EF  L    N + + LSKR                 R PT IS     GY P ++  F 
Sbjct: 230 YEFSRL----NLEGTVLSKRKLAQLVDDKFVRGWDDPRMPT-ISGLRRRGYTPASIREFC 284

Query: 282 ALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKL 322
             + V K +++ E++ ++  I      +  +A AV D  ++
Sbjct: 285 NRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVIDPVEV 325


>gnl|CDD|184797 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
           protein; Provisional.
          Length = 771

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 5   SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64
            +V  R  P P G  HIG A + L N+ IA+  GG+  LR++DT+ +    E   A+   
Sbjct: 30  PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDD 89

Query: 65  LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124
           ++W G +W E       Y          +Y  Y + L++  LA+    S E + E+R   
Sbjct: 90  VRWLGFDWGEHLYYASDYFE-------RMYA-YAEQLIKMGLAYVDSVSEEEIRELRGTV 141

Query: 125 RKRNIPSRY 133
            +   PS Y
Sbjct: 142 TEPGTPSPY 150


>gnl|CDD|178495 PLN02907, PLN02907, glutamate-tRNA ligase.
          Length = 722

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 6   KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-SKRSTLESENAVMQS 64
           KV  R  P P+G  HIG A  AL N   A+R  GK I+R +DT+ SK S    EN +++ 
Sbjct: 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVEN-ILKD 271

Query: 65  LKWCGLNWDE 74
           ++  G+ +D 
Sbjct: 272 IETLGIKYDA 281


>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
          Length = 523

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 62/240 (25%)

Query: 6   KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
           ++  R  P P+G  HIG A  AL N   A+R  G+ ILR +DT+  +   E E ++++ L
Sbjct: 11  QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDL 70

Query: 66  KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
               +     PD       Y +  R      Y   L+E+ LA+         EEM++   
Sbjct: 71  GKIEIK----PDSVSFTSDYFEPIRC-----YAIILIEEGLAYM---DDTPQEEMKK--- 115

Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEME-IPW--- 181
                               ER  + + KH  R   P +   +F++   G+ E   W   
Sbjct: 116 --------------------ERADRAESKH--RNQSPEEALEMFKEMCSGKEEGGAWCLR 153

Query: 182 NAVDMQ---------VLLKSD------------GMPTYHLANVIDDHLMKITHVARGEEW 220
             +DMQ         VL + +              PTY LA  I D +  +TH  R  E+
Sbjct: 154 AKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEY 213


>gnl|CDD|180031 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
          Length = 554

 Score = 44.3 bits (106), Expect = 8e-05
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 5   SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-SKRSTLESENAVMQ 63
           ++V  R  P P G  HIG A +   N+ +A+  GGK  LR +DT+  K    E  +++ +
Sbjct: 28  TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQ-EYVDSIKE 86

Query: 64  SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
            ++W G +W         Y  + Q     +Y+ Y   L++K  A+    S    EE+ R 
Sbjct: 87  DVRWLGFDWSGELRYASDY--FDQ-----LYE-YAVELIKKGKAYVDDLSA---EEI-RE 134

Query: 124 QR 125
            R
Sbjct: 135 YR 136


>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
          Length = 788

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 3   SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
           +  KV  R  P P G  HIG A     ++ +AK  GG   LR +DT+ +    E  + + 
Sbjct: 261 TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIE 320

Query: 63  QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQ---NLLEKKLAFRCFCSTERLEE 119
           + ++W G  W+          P++ +   + +Q   +    L+ +  A+    + E ++E
Sbjct: 321 EIVEWMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 368

Query: 120 MRRAQRKRNIPSR 132
            R  ++K N P R
Sbjct: 369 YR--EKKMNSPWR 379


>gnl|CDD|185617 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
          Length = 574

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 2   ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAV 61
           ++  K   R  P P G  HIG A +   N+  A+  GGK  LR +DT+ +       +A+
Sbjct: 47  VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAI 106

Query: 62  MQSLKWCG 69
           M+ +KW G
Sbjct: 107 MEMVKWMG 114


>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
          Length = 507

 Score = 35.5 bits (83), Expect = 0.035
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 41/97 (42%)

Query: 188 VLLKSDGMPTYH---LA-------------NVID-DHLMKITHVAR--------GEEWIS 222
           VL+KSDG  TY    +A              V+  DH     H  R        G +   
Sbjct: 247 VLIKSDGTYTYFTRDIAYHLYKFERFDRVIYVVGADH---HGHFKRLKAALKALGYDP-- 301

Query: 223 SVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRR 259
                +LL+Q             L++  +  K+S R 
Sbjct: 302 -DALEVLLHQMVG----------LVRGGEGVKMSTRA 327


>gnl|CDD|182299 PRK10199, PRK10199, alkaline phosphatase isozyme conversion
           aminopeptidase; Provisional.
          Length = 346

 Score = 32.4 bits (74), Expect = 0.26
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 123 AQRKRNIPSRYDGHCLKLSSQEI---------ERLSQEQKKHVVRLTVPNQGSCVFQDKV 173
           A+R +N+P+ Y    +  S +E          +R+S  +KK+   L V N  + +  DK+
Sbjct: 155 AERLKNVPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNT--LLVINLDNLIVGDKL 212

Query: 174 Y 174
           Y
Sbjct: 213 Y 213


>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD.  This
           model describes the bacterial and chloroplast form of
           MinD, a multifunctional cell division protein that
           guides correct placement of the septum. The homologous
           archaeal MinD proteins, with many archaeal genomes
           having two or more forms, are described by a separate
           model.
          Length = 261

 Score = 30.4 bits (69), Expect = 1.0
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 352 RLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFE 411
           RL QAL +   R+  L  LP              +++    A+ PE++  ++   +EEF+
Sbjct: 68  RLQQAL-IKDKRLKNLYLLP-------------ASQTRDKDAVTPEQMKKLVNELKEEFD 113

Query: 412 VIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFR 471
            + I     IE+  RN     ++++ ++  P   A+  +   + L ++  I    ++  R
Sbjct: 114 YVIIDCPAGIESGFRNAVAPADEAI-VVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNR 172

Query: 472 LR 473
           LR
Sbjct: 173 LR 174


>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
          Length = 326

 Score = 28.7 bits (65), Expect = 3.4
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 366 TLSALPQMTDFLF----KSDLHLTAESFKSTALCPEEIIDILKTTQE-EFEVIQIWKREN 420
           TL  +P+ T  L     K D  L     KST L       + K  +E EF +I  W  E 
Sbjct: 87  TLPLIPENTHLLLTNTKKPDGRL-----KSTKL-------LQKLAEEKEFSLIPPWDTEG 134

Query: 421 IETALRNVAQ 430
           ++  +   AQ
Sbjct: 135 LKQLVERTAQ 144


>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p;
           Reviewed.
          Length = 300

 Score = 28.7 bits (65), Expect = 4.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 401 DILKTTQEEFEVIQIWKRENIETALRNVAQHREKSL----KIIVKP 442
           + L T Q+  +    WK +  E  LR V    E +L    KII+K 
Sbjct: 187 EDLVTLQDLADAYYFWKEDGDEEELRRVILPMEYALSHLPKIIIKD 232


>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
          Length = 648

 Score = 28.2 bits (64), Expect = 4.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 15 PTGEPHIGTAYT 26
          P G+PHIG AYT
Sbjct: 15 PNGKPHIGHAYT 26


>gnl|CDD|180793 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 539

 Score = 28.1 bits (63), Expect = 4.9
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 32/113 (28%)

Query: 139 KLSSQEIERLSQEQKKHVVRLTVPNQGSCVF--QDKVYGE--MEIPWNAV---DMQV--- 188
           KL  +  +    EQ+K + +     QG  ++    K+ G+   E+PW+     D+QV   
Sbjct: 338 KLKWKHSQLPLDEQRKLLEK-----QGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGP 392

Query: 189 -----LLKSDG-------MPTYHLANVIDDHLMKITH-----VARGEEWISSV 224
                  + D         PT  +A +  D  M+IT      +  G EWISS+
Sbjct: 393 WVIDRYFRGDASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI 445


>gnl|CDD|165397 PHA03125, PHA03125, dUTPase; Provisional.
          Length = 376

 Score = 28.0 bits (62), Expect = 5.6
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 231 YQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277
           ++  N   PEF    L  N +      + N  +I  + AM    + L
Sbjct: 243 WEMINLSPPEFAKFHLKTNRE---FIVKPNSYTIQNFDAMYVCADEL 286


>gnl|CDD|184894 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
          Length = 434

 Score = 27.2 bits (61), Expect = 9.7
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%)

Query: 120 MRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQ 152
           +R+  R R       G  L L    IERL+   
Sbjct: 120 LRQYLRARE-----AGDPLPLPEDPIERLAILH 147


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0809    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,040,488
Number of extensions: 518215
Number of successful extensions: 1042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 42
Length of query: 492
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,898,497
Effective search space: 1539906315
Effective search space used: 1539906315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)