RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (492 letters) >gnl|CDD|179296 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed. Length = 476 Score = 681 bits (1759), Expect = 0.0 Identities = 221/482 (45%), Positives = 295/482 (61%), Gaps = 14/482 (2%) Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62 KVR R APSPTG HIG A TALFN+L A+ GGKFILRIEDTD +RST E+E A++ Sbjct: 1 MMMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAIL 60 Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122 + LKW GL+WDEGPD GG YGPYRQSER +IY+ Y + LLE+ A+ C+C+ E LE MR Sbjct: 61 EGLKWLGLDWDEGPD-GGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMRE 119 Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182 QR P RYDG C L+ +E+ + V+R VP++G VF D V GE+E P + Sbjct: 120 EQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNS 179 Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242 +D V+L+SDG PTY+ A V+DDHLM ITHV RGE+ +S+ PK ILLY+ + +P F Sbjct: 180 ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFA 239 Query: 243 HLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLI 302 HLPLI PD KLSKR TS+ Y MGYLPEAL+N+LALL S D E+ +++LI Sbjct: 240 HLPLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGW--SHGDQEIFSLEELI 297 Query: 303 HHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWM--------KEKDRLT 354 FDL +SK+ A FD +KLDWLNG +IRE L E + W ++ L Sbjct: 298 ELFDLERVSKSPARFDIKKLDWLNGHYIRE-LDPEELAELLLPWHLEQEGLDTEDGPYLE 356 Query: 355 QALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQ 414 + + L + R TL L ++ F F+ ++ K E ++L+ E+ E ++ Sbjct: 357 KVVPLLKERAKTLKELAELARFFFEDFPEYDEDAAK--KHLKEVAREVLEALLEKLEALE 414 Query: 415 IWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRH 474 W E IE A++ VA+ + PL +A+TG PLF+S+E+LG+ V RLR Sbjct: 415 EWTAEAIEAAIKAVAEELGLKGGKLFMPLRVALTGRTVGPPLFESMELLGKEEVLARLRK 474 Query: 475 AI 476 A+ Sbjct: 475 AL 476 >gnl|CDD|161891 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. Length = 470 Score = 468 bits (1206), Expect = e-132 Identities = 195/475 (41%), Positives = 284/475 (59%), Gaps = 20/475 (4%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65 KVR R APSPTG HIG A TALFNYL AK TGG+FILRIEDTD +R+ E+E A+++ L Sbjct: 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGL 60 Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125 KW G++WDEGP Y QS+R +IY+ Y + LLE+ LA+RC+CS ERLE +R Q+ Sbjct: 61 KWLGISWDEGP--------YYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQK 112 Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVD 185 RYDG C L +EIE + VVR +P + F D+V GE+ + +D Sbjct: 113 ANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELD 172 Query: 186 MQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245 V+L+SDG PTY+ A V+DD+LMKITHV RGE+ IS+ PK IL+YQ + IP F HLP Sbjct: 173 DFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLP 232 Query: 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHF 305 +I + D KLSKR TSI + GYLPEALIN+LALL DD E +++LI F Sbjct: 233 MILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWS-PPDDQEFFSLEELIEIF 291 Query: 306 DLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEK--------DRLTQAL 357 L+ +SK+ A FD +KL WLN +I+E L E + +K ++L + L Sbjct: 292 SLNRVSKSPAKFDWKKLQWLNAHYIKE-LPDEELFELLDPHLKSLVNTDTLNREQLAELL 350 Query: 358 TLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417 L + R+ TL + ++ F+ + ++FK + + ++L+ +++ + ++ W Sbjct: 351 LLFKERLKTLKEIAELIRLFFEDKKEVDEDAFKKHLK--KNVKEVLEALKKKLQALEEWT 408 Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRL 472 + +++A++ +A+ K + PL LA+TG + L +E++G++ RL Sbjct: 409 ADEVKSAIKQIAEELGLKGKKVFMPLRLALTGKGHGPDLAQILELIGKTESIKRL 463 >gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase. Length = 535 Score = 373 bits (959), Expect = e-104 Identities = 158/356 (44%), Positives = 218/356 (61%), Gaps = 6/356 (1%) Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62 VRVR APSPTG H+G A TALFNYL A+ GGKF+LRIEDTD RST ESE AV+ Sbjct: 42 KGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVL 101 Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122 + LKW GL+WDEGPD+GG YGPYRQSER IY+ Y + LLE + CFC+ E LE M+ Sbjct: 102 RDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKE 161 Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182 + +P RY G S +E++ + + R VP +GS D + G E+ WN Sbjct: 162 EAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRG--EVSWN 219 Query: 183 AVDMQ--VLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240 + VLL+S+G P Y+ +DD M ITHV R EE + + + L+Y+ FP+P Sbjct: 220 TDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPR 279 Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ 300 F H+ LI PD+SKLSKR TS+ + MGYLP+A++N+LALL + ++E+ +++ Sbjct: 280 FAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGT-ENEIFTLEE 338 Query: 301 LIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDRLTQA 356 L+ F + ++K+GAVFD KL W+NG+ +R L E + V + K L ++ Sbjct: 339 LVEKFSIDRINKSGAVFDSTKLKWMNGQHLR-LLPEEELVKLVGERWKSAGILKES 393 >gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional. Length = 445 Score = 247 bits (633), Expect = 5e-66 Identities = 117/324 (36%), Positives = 168/324 (51%), Gaps = 12/324 (3%) Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64 V R APSPTG H+G A TAL N+L A++ GGKFILRI+DTD +RS E +A+ + Sbjct: 1 MTVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAED 60 Query: 65 LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124 LKW G+NWD +RQS+R + Y + L + C+ + E LE R+ Q Sbjct: 61 LKWLGINWDR---------TFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQ 111 Query: 125 RKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV 184 R +P YD LKL+ +E L E +K R + + + D + GE I ++ Sbjct: 112 LSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKL-DDEPISWDDLIRGEQSIDAASL 170 Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244 VL+++DG Y L +V+DD M ITH+ RGE+ +++ I +++ P F HL Sbjct: 171 SDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHL 230 Query: 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHH 304 L+ D LSKR SI G P A+ + LA L S+ + M++L Sbjct: 231 SLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARL--GTSDPVEPYTSMEELAES 288 Query: 305 FDLHHLSKAGAVFDKQKLDWLNGR 328 FDL S+A A FD + L+ LN R Sbjct: 289 FDLSSFSRAPAKFDPEDLERLNAR 312 >gnl|CDD|180216 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed. Length = 299 Score = 229 bits (587), Expect = 1e-60 Identities = 98/318 (30%), Positives = 146/318 (45%), Gaps = 26/318 (8%) Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62 + + R APSP+G H G+ AL ++L A+ GG+++LRIED D R + +A++ Sbjct: 2 TMTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAIL 61 Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122 L+W GL+WD GP QS+R + Y+ + L + L + CFCS R E Sbjct: 62 ADLEWLGLHWD-GP-------VLYQSQRHDAYRAALDRLRAQGLVYPCFCS--RKEIAAA 111 Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182 A + Y G C L L + RL VP+ F D++ G Sbjct: 112 APAPPDGGGIYPGTCRDL-------LHGPRNPPAWRLRVPDAVIA-FDDRLQGRQHQDLA 163 Query: 183 AV--DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240 D VL ++DG+ Y LA V+DD L +THV RG + + S P+ I L Q P P Sbjct: 164 LAVGDF-VLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPR 222 Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDM-Q 299 ++HLPL+ N D KLSK+ ++ L L L D + ++ Sbjct: 223 YLHLPLVLNADGQKLSKQNGAPAL----DAAGPLPVLAAALRFLGQPPPAADASVEELLA 278 Query: 300 QLIHHFDLHHLSKAGAVF 317 Q + H+DL L + + Sbjct: 279 QAVAHWDLTRLPRQAEIN 296 >gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional. Length = 513 Score = 224 bits (573), Expect = 3e-59 Identities = 130/328 (39%), Positives = 187/328 (57%), Gaps = 14/328 (4%) Query: 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQ 63 ++ V R APSPTG HIG+A TALFNYL A+ GKF+LRIEDTD +RST E+ A+ Sbjct: 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFS 61 Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123 LKW GL+W+ G I QS+R N+Y+ LL+ A+ CF E +E Sbjct: 62 GLKWLGLDWN-GEVI-------FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIER---- 109 Query: 124 QRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNA 183 QR++ + ++ + + K V+RL P +GS D + GE+ I + Sbjct: 110 QRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSH 169 Query: 184 VDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIH 243 +D VLL++DG TY LA V+DDH M ITH+ RG++ +++ + + +YQ F + +P H Sbjct: 170 IDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTH 229 Query: 244 LPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIH 303 +PLI D +KLSKR I Y MGYLPE+L N+ LL + S DDE++ M Q I Sbjct: 230 IPLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNY--LLRLGWSHGDDEIISMTQAID 287 Query: 304 HFDLHHLSKAGAVFDKQKLDWLNGRWIR 331 F+L L K+ + D K++ LN ++R Sbjct: 288 WFNLDSLGKSPSKLDFAKMNSLNAHYLR 315 Score = 36.6 bits (84), Expect = 0.013 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 348 KEKDRLTQALTLAQSRITTLSALPQMTD-FLFKSDLHLTAESFKSTALCPEEIIDILKTT 406 +E + QA+ R TL L ++ +L S + + +S + C + +I K Sbjct: 388 QEIGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLI---KQI 444 Query: 407 QEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRS 466 E ++ + +E+++ + +A + L I+KP+ ITG S +F+ EILG+ Sbjct: 445 IENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKE 504 Query: 467 VVYFRLR 473 + RL+ Sbjct: 505 NILKRLK 511 >gnl|CDD|183510 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional. Length = 433 Score = 222 bits (569), Expect = 1e-58 Identities = 113/318 (35%), Positives = 174/318 (54%), Gaps = 17/318 (5%) Query: 10 RIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCG 69 R APSPTG+ HIG A+FNY++AK+ F++RIEDTD +R+ + +++ L G Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFG 62 Query: 70 LNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNI 129 ++WD+ QSE ++ + LL +K AF CFCS E LE + + Sbjct: 63 ISWDK---------LVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKK 113 Query: 130 PSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVL 189 P RYDG C L E+ K VVRL PN F D + GE+ + +D V+ Sbjct: 114 PYRYDGTCENLEDDEV---LNCNKPFVVRLKKPNHTMS-FTDAIKGEVSFEPDEIDSFVI 169 Query: 190 LKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP-EFIHLPLIK 248 L++D PTY+ A +DD L I+ + RGE+ +S+ PK IL+ + + + HLP+I Sbjct: 170 LRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIIL 229 Query: 249 NPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLH 308 N + K+SKR N +S+ + G+LP A+ N+L LL + E+ +++ I FD+ Sbjct: 230 NEEGKKMSKRDNASSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIE 286 Query: 309 HLSKAGAVFDKQKLDWLN 326 +SK+ A FD +KL ++N Sbjct: 287 KISKSPAKFDLKKLRFIN 304 >gnl|CDD|163550 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. Length = 272 Score = 205 bits (524), Expect = 2e-53 Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 21/272 (7%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 R R APSP+G H G+ AL +YL A+ GG++++RIED D R + + ++++L+ Sbjct: 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 GL+WD QS+R +YQ + LL LA+ C C+ + + Sbjct: 61 AYGLHWDGEVV--------YQSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDG-- 110 Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN-AVD 185 Y G C L + + RL VP+ F D++ G + AV Sbjct: 111 ---GGIYPGTC------RNGLLGRPARPAAWRLRVPDGVIA-FDDRLQGPQQQDLAAAVG 160 Query: 186 MQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245 VL ++DG+ Y LA V+DD ITHV RG + + S P+ I L + P P ++HLP Sbjct: 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLP 220 Query: 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277 L+ N D KLSK+ ++ + L AL Sbjct: 221 LVVNADGEKLSKQNGAPALDLSHPLPALLAAL 252 >gnl|CDD|161890 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). Length = 560 Score = 119 bits (299), Expect = 2e-27 Identities = 79/263 (30%), Positives = 119/263 (45%), Gaps = 30/263 (11%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65 +V +R AP+P+G HIG A A+ N AK+ GK I+R +DTD +R E+ + +++ L Sbjct: 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDL 152 Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125 W G+ DE QS+R Y Y + L+E A+ C C E E+ R Sbjct: 153 DWLGVKGDE---------VVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFREL----R 199 Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQK-------KHVVRL-TVPNQGSCVFQDKV-YGE 176 + C S +E + +E K VVR T + +D V + Sbjct: 200 NDGVAC----ACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRI 255 Query: 177 MEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236 + P + + PT + IDDHL+ +THV RG++ I + K +Y YF + Sbjct: 256 NKTPHPRTGDKYKV----YPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGW 311 Query: 237 PIPEFIHLPLIKNPDKSKLSKRR 259 +PEFIH +K D LS Sbjct: 312 ELPEFIHWGRLKINDVRTLSTSS 334 >gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional. Length = 567 Score = 106 bits (267), Expect = 1e-23 Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 11/120 (9%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD--SKRSTLESENAVMQ 63 KV +R AP+P+G H+G A A+ N AK GGKFILR EDTD +KR E+ + +++ Sbjct: 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILE 160 Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123 LKW G+ WDE QS+R IY Y + L+E A+ C C E +E+R A Sbjct: 161 DLKWLGVKWDE---------VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDA 211 Score = 61.4 bits (150), Expect = 5e-10 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 23/104 (22%) Query: 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPD---- 251 PTY+ A +DDHL+ +THV RG++ I + K +Y YF + PE IH +K Sbjct: 281 PTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLS 340 Query: 252 KSKLSKR------------RNPTSISYYSAM---GYLPEALINF 280 SK+ K R PT A+ G LPEA+ Sbjct: 341 TSKIRKGIEEGEYSGWDDPRLPT----LRALRRRGILPEAIREL 380 >gnl|CDD|173593 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional. Length = 601 Score = 70.4 bits (172), Expect = 1e-12 Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 40/268 (14%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65 KV R P +G HIG A AL N ++A + GK + R +DT+ + E A++ L Sbjct: 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDL 111 Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125 G++WD GP Y ++ + L++K LA +C EEM++ R Sbjct: 112 ATLGVSWDVGPTYSSDY--------MDLMYEKAEELIKKGLA---YCDKTPREEMQKC-R 159 Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHV---------VRLTVPNQGSCVFQDKVYGE 176 +P++Y +S +E +RL E KK +++V N+ + +Y Sbjct: 160 FDGVPTKYR----DISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRV 215 Query: 177 MEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236 P + K PTY I D + +TH R E+ H QY+ F Sbjct: 216 NLTP----HARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEY------HDRNDQYYWF 265 Query: 237 PIPEFIHLPLIK-----NPDKSKLSKRR 259 I P+++ N + S +SKR+ Sbjct: 266 CDALGIRKPIVEDFSRLNMEYSVMSKRK 293 >gnl|CDD|161880 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. Length = 522 Score = 61.5 bits (149), Expect = 5e-10 Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 41/341 (12%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 V R P P G HIG A + N+ AK G LR +DT+ + E ++ + ++ Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 W G W+ Y + + R Y + L++K LA+ + E + E R Sbjct: 61 WLGFKWEGKIRYSSDY--FDELYR------YAEELIKKGLAYVDELTPEEIREYRGTLTD 112 Query: 127 RNIPSRYDGHCLKLSSQEIERLSQ---EQKKHVVRLTVP-NQGSCVFQDKVYGEMEIPWN 182 S Y ++ + E++ ++ K ++R + V +D V ++ Sbjct: 113 PGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIK---F 169 Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITH-VARGEEWISSVPKHILLYQYFNFPIP-- 239 A Q K P Y + I D + ITH + E + +L FP P Sbjct: 170 APHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQ 229 Query: 240 -EFIHLPLIKNPDKSKLSKR-----------------RNPTSISYYSAMGYLPEALINFL 281 EF L N + + LSKR R PT IS GY P ++ F Sbjct: 230 YEFSRL----NLEGTVLSKRKLAQLVDDKFVRGWDDPRMPT-ISGLRRRGYTPASIREFC 284 Query: 282 ALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKL 322 + V K +++ E++ ++ I + +A AV D ++ Sbjct: 285 NRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVIDPVEV 325 >gnl|CDD|184797 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional. Length = 771 Score = 59.0 bits (143), Expect = 2e-09 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64 +V R P P G HIG A + L N+ IA+ GG+ LR++DT+ + E A+ Sbjct: 30 PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDD 89 Query: 65 LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124 ++W G +W E Y +Y Y + L++ LA+ S E + E+R Sbjct: 90 VRWLGFDWGEHLYYASDYFE-------RMYA-YAEQLIKMGLAYVDSVSEEEIRELRGTV 141 Query: 125 RKRNIPSRY 133 + PS Y Sbjct: 142 TEPGTPSPY 150 >gnl|CDD|178495 PLN02907, PLN02907, glutamate-tRNA ligase. Length = 722 Score = 54.0 bits (130), Expect = 1e-07 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-SKRSTLESENAVMQS 64 KV R P P+G HIG A AL N A+R GK I+R +DT+ SK S EN +++ Sbjct: 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVEN-ILKD 271 Query: 65 LKWCGLNWDE 74 ++ G+ +D Sbjct: 272 IETLGIKYDA 281 >gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional. Length = 523 Score = 52.3 bits (125), Expect = 2e-07 Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 62/240 (25%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65 ++ R P P+G HIG A AL N A+R G+ ILR +DT+ + E E ++++ L Sbjct: 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDL 70 Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125 + PD Y + R Y L+E+ LA+ EEM++ Sbjct: 71 GKIEIK----PDSVSFTSDYFEPIRC-----YAIILIEEGLAYM---DDTPQEEMKK--- 115 Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEME-IPW--- 181 ER + + KH R P + +F++ G+ E W Sbjct: 116 --------------------ERADRAESKH--RNQSPEEALEMFKEMCSGKEEGGAWCLR 153 Query: 182 NAVDMQ---------VLLKSD------------GMPTYHLANVIDDHLMKITHVARGEEW 220 +DMQ VL + + PTY LA I D + +TH R E+ Sbjct: 154 AKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEY 213 >gnl|CDD|180031 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional. Length = 554 Score = 44.3 bits (106), Expect = 8e-05 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 14/122 (11%) Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-SKRSTLESENAVMQ 63 ++V R P P G HIG A + N+ +A+ GGK LR +DT+ K E +++ + Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQ-EYVDSIKE 86 Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123 ++W G +W Y + Q +Y+ Y L++K A+ S EE+ R Sbjct: 87 DVRWLGFDWSGELRYASDY--FDQ-----LYE-YAVELIKKGKAYVDDLSA---EEI-RE 134 Query: 124 QR 125 R Sbjct: 135 YR 136 >gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase. Length = 788 Score = 40.1 bits (94), Expect = 0.001 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 17/133 (12%) Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62 + KV R P P G HIG A ++ +AK GG LR +DT+ + E + + Sbjct: 261 TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIE 320 Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQ---NLLEKKLAFRCFCSTERLEE 119 + ++W G W+ P++ + + +Q + L+ + A+ + E ++E Sbjct: 321 EIVEWMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 368 Query: 120 MRRAQRKRNIPSR 132 R ++K N P R Sbjct: 369 YR--EKKMNSPWR 379 >gnl|CDD|185617 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional. Length = 574 Score = 40.0 bits (93), Expect = 0.001 Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAV 61 ++ K R P P G HIG A + N+ A+ GGK LR +DT+ + +A+ Sbjct: 47 VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAI 106 Query: 62 MQSLKWCG 69 M+ +KW G Sbjct: 107 MEMVKWMG 114 >gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed. Length = 507 Score = 35.5 bits (83), Expect = 0.035 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 41/97 (42%) Query: 188 VLLKSDGMPTYH---LA-------------NVID-DHLMKITHVAR--------GEEWIS 222 VL+KSDG TY +A V+ DH H R G + Sbjct: 247 VLIKSDGTYTYFTRDIAYHLYKFERFDRVIYVVGADH---HGHFKRLKAALKALGYDP-- 301 Query: 223 SVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRR 259 +LL+Q L++ + K+S R Sbjct: 302 -DALEVLLHQMVG----------LVRGGEGVKMSTRA 327 >gnl|CDD|182299 PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional. Length = 346 Score = 32.4 bits (74), Expect = 0.26 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 11/61 (18%) Query: 123 AQRKRNIPSRYDGHCLKLSSQEI---------ERLSQEQKKHVVRLTVPNQGSCVFQDKV 173 A+R +N+P+ Y + S +E +R+S +KK+ L V N + + DK+ Sbjct: 155 AERLKNVPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNT--LLVINLDNLIVGDKL 212 Query: 174 Y 174 Y Sbjct: 213 Y 213 >gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. Length = 261 Score = 30.4 bits (69), Expect = 1.0 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 352 RLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFE 411 RL QAL + R+ L LP +++ A+ PE++ ++ +EEF+ Sbjct: 68 RLQQAL-IKDKRLKNLYLLP-------------ASQTRDKDAVTPEQMKKLVNELKEEFD 113 Query: 412 VIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFR 471 + I IE+ RN ++++ ++ P A+ + + L ++ I ++ R Sbjct: 114 YVIIDCPAGIESGFRNAVAPADEAI-VVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNR 172 Query: 472 LR 473 LR Sbjct: 173 LR 174 >gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated. Length = 326 Score = 28.7 bits (65), Expect = 3.4 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 17/70 (24%) Query: 366 TLSALPQMTDFLF----KSDLHLTAESFKSTALCPEEIIDILKTTQE-EFEVIQIWKREN 420 TL +P+ T L K D L KST L + K +E EF +I W E Sbjct: 87 TLPLIPENTHLLLTNTKKPDGRL-----KSTKL-------LQKLAEEKEFSLIPPWDTEG 134 Query: 421 IETALRNVAQ 430 ++ + AQ Sbjct: 135 LKQLVERTAQ 144 >gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p; Reviewed. Length = 300 Score = 28.7 bits (65), Expect = 4.1 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 401 DILKTTQEEFEVIQIWKRENIETALRNVAQHREKSL----KIIVKP 442 + L T Q+ + WK + E LR V E +L KII+K Sbjct: 187 EDLVTLQDLADAYYFWKEDGDEEELRRVILPMEYALSHLPKIIIKD 232 >gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed. Length = 648 Score = 28.2 bits (64), Expect = 4.4 Identities = 9/12 (75%), Positives = 10/12 (83%) Query: 15 PTGEPHIGTAYT 26 P G+PHIG AYT Sbjct: 15 PNGKPHIGHAYT 26 >gnl|CDD|180793 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated. Length = 539 Score = 28.1 bits (63), Expect = 4.9 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 32/113 (28%) Query: 139 KLSSQEIERLSQEQKKHVVRLTVPNQGSCVF--QDKVYGE--MEIPWNAV---DMQV--- 188 KL + + EQ+K + + QG ++ K+ G+ E+PW+ D+QV Sbjct: 338 KLKWKHSQLPLDEQRKLLEK-----QGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGP 392 Query: 189 -----LLKSDG-------MPTYHLANVIDDHLMKITH-----VARGEEWISSV 224 + D PT +A + D M+IT + G EWISS+ Sbjct: 393 WVIDRYFRGDASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI 445 >gnl|CDD|165397 PHA03125, PHA03125, dUTPase; Provisional. Length = 376 Score = 28.0 bits (62), Expect = 5.6 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%) Query: 231 YQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277 ++ N PEF L N + + N +I + AM + L Sbjct: 243 WEMINLSPPEFAKFHLKTNRE---FIVKPNSYTIQNFDAMYVCADEL 286 >gnl|CDD|184894 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional. Length = 434 Score = 27.2 bits (61), Expect = 9.7 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%) Query: 120 MRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQ 152 +R+ R R G L L IERL+ Sbjct: 120 LRQYLRARE-----AGDPLPLPEDPIERLAILH 147 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0809 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,040,488 Number of extensions: 518215 Number of successful extensions: 1042 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1009 Number of HSP's successfully gapped: 42 Length of query: 492 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 395 Effective length of database: 3,898,497 Effective search space: 1539906315 Effective search space used: 1539906315 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.4 bits)