RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (492 letters) >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 Score = 449 bits (1157), Expect = e-127 Identities = 167/481 (34%), Positives = 267/481 (55%), Gaps = 31/481 (6%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 VRVR APSPTG H+G A TALFN++ A++ GGKFILRIEDTD++RS+ E E +++SL+ Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 WCGL+WDEGPDIGG +GPYRQSER IY+ Y + L+E K A+ E + + Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 249 Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186 + GH ++ V G F+D + G ME + ++ Sbjct: 250 YPHEYKEKGHP-----------------VTIKFKVLP-GKTSFEDLLKGYMEFDNSTLED 291 Query: 187 QVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246 +++KS+G PTY+ A V+DDHLM+I+HV RGE+ +S+ PK +++Y+ F + P F+H+PL Sbjct: 292 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351 Query: 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 I D++ LSKR TS+ ++ G L AL+N+LALL + DE+ +++ + FD Sbjct: 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRV--EGDEIFTIEEKLQSFD 409 Query: 307 LHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDRLTQALT-------- 358 +S G +FD QKL+W+NG+ +R ++ + +W K + ++ Sbjct: 410 PKDISNKGVIFDYQKLEWVNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETL 468 Query: 359 -LAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417 + + ++ TLS L + D + + L EE +L+ ++ F+ + W Sbjct: 469 RICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEK-FLKREEAERVLEEAKKAFKDLNSWN 527 Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477 E IE LR++++ S K++ + + A+TG + LF++IE+LG+ RL + Sbjct: 528 MEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQ 587 Query: 478 L 478 Sbjct: 588 F 588 >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} Length = 488 Score = 430 bits (1108), Expect = e-121 Identities = 168/483 (34%), Positives = 269/483 (55%), Gaps = 31/483 (6%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 VRVR APSPTG H+G A TALFN++ A++ GGKFILRIEDTD++RS+ E E +++SL+ Sbjct: 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 WCGL+WDEGPDIGG +GPYRQSER IY+ Y + L+E K A+ E + + Sbjct: 86 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 145 Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186 + GH ++ V G F+D + G ME + ++ Sbjct: 146 YPHEYKEKGHP-----------------VTIKFKVLP-GKTSFEDLLKGYMEFDNSTLED 187 Query: 187 QVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246 +++KS+G PTY+ A V+DDHLM+I+HV RGE+ +S+ PK +++Y+ F + P F+H+PL Sbjct: 188 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 247 Query: 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 I D++ LSKR TS+ ++ G L AL+N+LALL + DE+ +++ + FD Sbjct: 248 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLG--WRVEGDEIFTIEEKLQSFD 305 Query: 307 LHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDR---------LTQAL 357 +S G +FD QKL+W+NG+ +R ++ + +W K + ++ L Sbjct: 306 PKDISNKGVIFDYQKLEWVNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETL 364 Query: 358 TLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417 + + ++ TLS L + D + + L EE +L+ ++ F+ + W Sbjct: 365 RICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEK-FLKREEAERVLEEAKKAFKDLNSWN 423 Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477 E IE LR++++ S K++ + + A+TG + LF++IE+LG+ RL + Sbjct: 424 MEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQ 483 Query: 478 LVS 480 + Sbjct: 484 FLK 486 >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 Score = 410 bits (1055), Expect = e-115 Identities = 196/478 (41%), Positives = 285/478 (59%), Gaps = 18/478 (3%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 V RIAPSPTG+PH+GTAY ALFNY A+R GG+FI+RIEDTD R +E ++ +LK Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 W GL++DEGPD+GG +GPYRQSER +YQ Y + LL++ A+R F + E LE++R+ + Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121 Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186 YDG + +E E ++ + HV+RL VP G+ +D++ G + + Sbjct: 122 ------YDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175 Query: 187 QVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246 VLLKSDG PTYHLANV+DDHLM +T V R EEW+ S P H+LLY+ F + P F H+PL Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235 Query: 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 ++NPDK+K+SKR++ TS+ +Y A G+LPEAL N+L L+ D E+ +++ I F Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSM-PDGREIFTLEEFIQAFT 294 Query: 307 LHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEK-------DRLTQALTL 359 +S G VFD +KL W+NG++IRE LS E RV +++E L +A+ L Sbjct: 295 WERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVEL 354 Query: 360 AQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRE 419 + R TL P+ +LF D ++ ++ + EE + +LK + W Sbjct: 355 MRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKL----EEGLPLLKELYPRLRAQEEWTEA 410 Query: 420 NIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477 +E LR A + L + +PL A+TGS + LF+ + +LG+ RL A+A Sbjct: 411 ALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERALA 468 >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima} Length = 481 Score = 391 bits (1004), Expect = e-109 Identities = 165/478 (34%), Positives = 255/478 (53%), Gaps = 20/478 (4%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 VRVR APSPTG H+G A TALFN+L A++ GKFILRIEDTD +RS E E +M+SL+ Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLR 73 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 W GL WDEGPD+GG +GPYRQSER IY+ + + L+++ A+ + E +EEMR Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLS 133 Query: 127 RNIPSRYDGHCLK--LSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV 184 Y + + + ++ + V +P + + V GE+ A+ Sbjct: 134 EGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDV-VKGEVVFKTGAI 192 Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244 V+++S+G+PTY+ A V+DD LM+ITHV RG++ +S+ + + LY+ F P F H+ Sbjct: 193 GDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHV 252 Query: 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHH 304 I PD KLSKR TS+ + MGYLPEAL+N+LALL + EL+ +++LI Sbjct: 253 STILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLG-WSHPEGKELLTLEELISS 311 Query: 305 FDLHHLSKAGAVFDKQKLDWLNGRWIREKLST------TEFLSRVSQWMKEKDRLTQALT 358 F L LS A+FD QKL W+NG ++R F + + +++ + L Sbjct: 312 FSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPFFEKAGIKIIDEEYFKKVLE 371 Query: 359 LAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKR 418 + + R+ LS P+ + F F+ + PEE+ ++ +EE + ++ W Sbjct: 372 ITKERVEVLSEFPEESRFFFEDPAPVEI---------PEEMKEVFSQLKEELQNVR-WTM 421 Query: 419 ENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAI 476 E I + V + K L +TG + L + I +LG+ + R+ ++ Sbjct: 422 EEITPVFKKVLKQHGVKPKEFYMTLRRVLTGREEGPELVNIIPLLGKEIFLRRIERSL 479 >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492 Score = 348 bits (894), Expect = 1e-96 Identities = 161/491 (32%), Positives = 231/491 (47%), Gaps = 26/491 (5%) Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66 VRVR+APSPTG HIGTA TA+FN+L A+ GGKFILRIEDTD +RS E +++ L+ Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 W GL WDE GPY QS+R ++Y+ +Q LL+K LA+ C+C+ E LE +R Q+ Sbjct: 62 WLGLTWDE--------GPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKA 113 Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186 + RYD L+ +E + V+R + + +QD V G + + Sbjct: 114 KGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGG 173 Query: 187 QV------LLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240 + G P Y+L V+DD M IT V RGE+ I + PK ILLY+ P Sbjct: 174 DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPN 233 Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ 300 F H PLI N KLSKR TSIS + AMGYL AL N++ LL E EL + Sbjct: 234 FAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDL 293 Query: 301 LIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREK---------LSTTEFLSRVSQWMKEKD 351 HF ++KAGA FD KL+WLN ++I++ + + +++ Sbjct: 294 AAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDRP 353 Query: 352 RLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFE 411 L L Q + TL F + +E+ L + IL E Sbjct: 354 WLFDLAQLLQPGLNTLREAIDQGAVFFIPSVTFDSEAMAQ--LGQPQSATILAYLLEHLP 411 Query: 412 VIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILG-RSVVYF 470 + ++ A+ ++ L A+TG+ + L + +IL R Sbjct: 412 AEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWDEP 471 Query: 471 RLRHAIALVSS 481 RL A+ + Sbjct: 472 RLAAALKQAQT 482 >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} Length = 498 Score = 335 bits (859), Expect = 2e-92 Identities = 162/492 (32%), Positives = 244/492 (49%), Gaps = 18/492 (3%) Query: 1 MISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENA 60 M ++ VRVR PSPTG PH+G TALFN+ A+ TGG F+ RIEDTD++R + ES A Sbjct: 1 MTATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLA 60 Query: 61 VMQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEM 120 ++ +L+W GL+WDEGP++GG YGPYRQS+R IY+ + LL A+ F + E +E Sbjct: 61 LLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEAR 120 Query: 121 RRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIP 180 A + YD L+ + E ++ VVRL +P + D V G + Sbjct: 121 HVAAGRNPKL-GYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP-DDDLAWNDLVRGPVTFA 178 Query: 181 WNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-----N 235 +V L ++ G P Y L N DD LMKITHV RGE+ + S P+ + L+Q Sbjct: 179 AGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVA 238 Query: 236 FPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDEL 295 IP+F HLP + KLSKR +++ + G++PE L+N+LALL DD +L Sbjct: 239 ERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLG-WSIADDHDL 297 Query: 296 MDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIRE-------KLSTTEFLSRVSQWMK 348 + +++ FD+ ++ + A FD++K D LN IR + Sbjct: 298 FGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHLDTHGHHIAL 357 Query: 349 EKDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQE 408 ++ A L Q+RI L ++ F + ++ + +L Sbjct: 358 DEAAFAAAAELVQTRIVVLGDAWELLKFFNDDQYVIDPKAAA--KELGPDGAAVLDAALA 415 Query: 409 EFEVIQIWKRENIETALRN-VAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSV 467 + W IE AL++ + + + P+ +A TG+ S PLF+S+E+LGR Sbjct: 416 ALTSVTDWTAPLIEAALKDALIEGLALKPRKAFSPIRVAATGTTVSPPLFESLELLGRDR 475 Query: 468 VYFRLRHAIALV 479 RLR A LV Sbjct: 476 SMQRLRAARQLV 487 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Score = 302 bits (774), Expect = 1e-82 Identities = 66/346 (19%), Positives = 132/346 (38%), Gaps = 29/346 (8%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65 +V R P P+G H+G + +L ++ A++ GG+F LR++DT+ + + E +++ L Sbjct: 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125 Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125 KW GL+W E Y S+ + Y Y + L+ + A+ S E L +R Sbjct: 126 KWLGLDWGE--------HFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNAT 177 Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQK---KHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182 PS Y ++ + + R+ + +HV+R + + + Sbjct: 178 TPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKP 237 Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242 + P Y + + D + +TH E++ + + L + NF Sbjct: 238 HFRTSD--EWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQ 295 Query: 243 HLPLIKNPDKSKLSKRR----------------NPTSISYYSAMGYLPEALINFLALLFV 286 + + + + SKR+ ++ +G PEA+ F A + V Sbjct: 296 YEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGV 355 Query: 287 HKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIRE 332 ++ ++ + + H + AV D K+ N + Sbjct: 356 SRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKT 401 >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553 Score = 297 bits (761), Expect = 4e-81 Identities = 70/351 (19%), Positives = 122/351 (34%), Gaps = 31/351 (8%) Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64 + V R P P G HIG A + N+ IA+ G+ LR +DT+ + +E ++ Sbjct: 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 84 Query: 65 LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124 ++W G +W S+ + Y L+ K LA+ + E++ E R Sbjct: 85 VEWLGFHWSG--------NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTL 136 Query: 125 RKRNIPSRYDGHCLKLSSQEIER----LSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIP 180 + S Y ++ + E+ +E K + V +D V + Sbjct: 137 TQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRI--- 193 Query: 181 WNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFP--- 237 A Q K P Y + I D L ITH E+ + + + P Sbjct: 194 KFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHP 253 Query: 238 -------------IPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALL 284 + L L+ + +IS GY ++ F + Sbjct: 254 RQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRI 313 Query: 285 FVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLS 335 V K ++ E+ ++ I + +A AV D KL N + E ++ Sbjct: 314 GVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVT 364 >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* Length = 298 Score = 271 bits (695), Expect = 2e-73 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 37/327 (11%) Query: 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAV 61 ++ ++ R APSP+GE H G+ AL +YL A+ G++++RIED D R + + Sbjct: 1 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETI 60 Query: 62 MQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMR 121 ++ L+ GL+WD QS+R + Y+ + L E+ L++ C C+ R++ + Sbjct: 61 LRQLEHYGLHWD--------GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG 112 Query: 122 RAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPW 181 + VR+ + + Sbjct: 113 GIYDGHCRVLHHGPDN-----------------AAVRIRQQHPVTQFTDQLRGIIHADEK 155 Query: 182 NAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEF 241 A + ++ + DG+ Y+LA V+DDH +T + RG + I + I LYQ F + +P++ Sbjct: 156 LAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDY 215 Query: 242 IHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL 301 IHLPL NP +KLSK+ + ++ G LI L L ++E + ++Q+ Sbjct: 216 IHLPLALNPQGAKLSKQNHAPALP----KGDPRPVLIAALQFL-GQQAEAHWQDFSVEQI 270 Query: 302 ----IHHFDLHHLSKAGAV---FDKQK 321 + ++ L + ++ V F Sbjct: 271 LQSAVKNWRLTAVPESAIVNSTFSNAS 297 >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553 Score = 260 bits (666), Expect = 4e-70 Identities = 83/337 (24%), Positives = 142/337 (42%), Gaps = 31/337 (9%) Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65 +V +R AP+P+G HIG A A+ N+ A++ G+ ILRIEDTD +R E+ + + L Sbjct: 96 EVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADL 155 Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125 +W G+ WDE QS+R Y Y + L+E+ A+ C C E E++ Sbjct: 156 EWLGVEWDE---------TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGE 206 Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVP-NQGSCVFQDKVYGEMEIPWNAV 184 + S L+ E ++ VVR+ N + +D V + A Sbjct: 207 ACHCRSLGFRENLQR---WREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIV---EAE 260 Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244 + + P + + +DDHL+ +THV RG++ +++ K LY++ + PEFIH Sbjct: 261 HPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHY 320 Query: 245 PLIKNPD------KSKLSKRRNPTS---------ISYYSAMGYLPEALINFLALLFVHKS 289 +K D ++ R S + + G PEA+ + + V + Sbjct: 321 GRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIA 380 Query: 290 EDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLN 326 + + L + D KL+ + Sbjct: 381 DSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVG 417 >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 Score = 200 bits (508), Expect = 6e-52 Identities = 66/507 (13%), Positives = 135/507 (26%), Gaps = 46/507 (9%) Query: 6 KVRVRIAPSPTGEPHIGTA-----YTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENA 60 K V +P+G H+G + + L K + I +D D R + Sbjct: 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ 80 Query: 61 VMQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQ--PYVQNLLEKKLAFRCFCSTERLE 118 + + G+ E PD G + Y + + + + ++ A + E E Sbjct: 81 EWK--DYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSE 138 Query: 119 EMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEME 178 E+R A KR+ +++ Q + + + + Sbjct: 139 EIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYK 198 Query: 179 IPWNAVDMQVLLKSDGMPTYH-------LANVIDDHLMKITHVARGEEWISSVPKHILLY 231 P + + + +D H+ G + + Sbjct: 199 CPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEII---K 255 Query: 232 QYFNFPIPEFIHLP-LIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSE 290 + + P + + K K+S + + P + A +K Sbjct: 256 EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 315 Query: 291 DDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWI---------REKLSTTEFLS 341 D + + L F+ + + + K D R ++ F Sbjct: 316 KIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELRRTYELSMPKKPERLVAQAPFRF 373 Query: 342 RVSQWMKEKDRLTQALTLAQSRITTLSALPQMT---------------DFLFKSDLHLTA 386 + + + L + D+ + Sbjct: 374 LAVLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKYAPEDVKFSI 433 Query: 387 ESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLA 446 E++ + + E E + + E L VA+ R S + L+ Sbjct: 434 LEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLYRL 493 Query: 447 ITGSKYSLPLFDSIEILGRSVVYFRLR 473 G + L + L RS V RLR Sbjct: 494 FIGKERGPRLASFLASLDRSFVIKRLR 520 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.4 bits (115), Expect = 4e-06 Identities = 59/417 (14%), Positives = 109/417 (26%), Gaps = 171/417 (41%) Query: 131 SRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV------ 184 ++ G+ S +E Q V+ L + + F++ +I +A+ Sbjct: 62 GKFLGYV----SSLVEPSKVGQFDQVLNLCL-TE----FENCYLEGNDI--HALAAKLLQ 110 Query: 185 --DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLY-----Q----- 232 D ++ + + Y A ++ + + + + L Q Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168 Query: 233 YFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDD 292 YF E L Y L LI F A Sbjct: 169 YFE----ELRDL----------------------YQTYHVLVGDLIKFSAETLSELIRTT 202 Query: 293 DELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFL--SRVSQWMKEK 350 + + ++ L+WL ++L +S Sbjct: 203 LDAEKVFT--QGLNI--------------LEWLEN---PSNTPDKDYLLSIPIS------ 237 Query: 351 DR-----LTQALTLAQSRIT--TLSALP-QMTDFLFKSDLH----LTAESFKSTALCPEE 398 + Q LA +T L P ++ +L + H +TA + Sbjct: 238 --CPLIGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA-VAIAET----- 286 Query: 399 IIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSK------- 451 + E F ++ A+ + LF I G + Sbjct: 287 ------DSWESFF-------VSVRKAIT---------V------LF-FI-GVRCYEAYPN 316 Query: 452 YSLP---LFDSIE-----------I--LGRSVVYFRL----------RH-AIALVSS 481 SLP L DS+E I L + V + + I+LV+ Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373 Score = 35.3 bits (81), Expect = 0.029 Identities = 44/249 (17%), Positives = 74/249 (29%), Gaps = 78/249 (31%) Query: 253 SKLSKRRNPTSISY----YSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLH 308 S R P ++S+ + + +P A F+A QL F Sbjct: 2 DAYSTR--PLTLSHGSLEHVLL--VPTASF-FIA----------------SQLQEQF-NK 39 Query: 309 HLSKAGAVFDKQKLDWLNGRWIREKLSTTE----FLSRVSQWMKEKDRLTQALTLAQSRI 364 L + F E + E FL VS + Sbjct: 40 ILPEPTEGFAADD----------EPTTPAELVGKFLGYVS------SLVEP--------- 74 Query: 365 TTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETA 424 S + Q L +L LT F++ L +I + +E + + +E I+ Sbjct: 75 ---SKVGQFDQVL---NLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126 Query: 425 LRNVAQHREKSLKIIVKPLFLAITGSKYSL-PLFD---SIEILGRSVVYFR-LR--HAI- 476 + + K LF A+ L +F + + YF LR + Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD------DYFEELRDLYQTY 180 Query: 477 -ALVSSLVQ 484 LV L++ Sbjct: 181 HVLVGDLIK 189 >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Score = 42.6 bits (99), Expect = 2e-04 Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 18/203 (8%) Query: 12 APSPTGEPHIGTAYTALFNYLIA---KRTGGKFILRIEDTDSKRSTLESENAVMQSLKWC 68 + +P E H+G IA G + ++ D+ R E+ + +L+ Sbjct: 111 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAET----LFALRHY 166 Query: 69 GLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKL-AFRCFCSTERLEEMRRAQRK- 126 GL WD G ++ +Q +E+ L A E + + AQ Sbjct: 167 GLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMAT 226 Query: 127 ------RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIP 180 R ++ ++ + EQ HV R + D IP Sbjct: 227 MHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDA---SPVIP 283 Query: 181 WNAVDMQVLLKSDGMPTYHLANV 203 VLL+S+G TY+ ++ Sbjct: 284 GLEDPFFVLLRSNGTATYYAKDI 306 >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Score = 33.5 bits (76), Expect = 0.10 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 35/222 (15%) Query: 12 APSPTGEPHIGTAYTALFNYLIAK--RTGGKFILR---IEDTDSKRSTLESENAVMQSLK 66 +P+ H G + + +A G ++R + D + L + Sbjct: 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLL------AVGFE 204 Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126 G D K+I + LE+ + +R+E+ K Sbjct: 205 RYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALK 264 Query: 127 ----------RNIPSRYDGHCLKLSSQEIER-LSQEQKKHVVR------LTVPNQGSCVF 169 Y +K E +S+E + LT ++G+ + Sbjct: 265 IWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLI 324 Query: 170 QDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKI 211 + + ++ KSDG Y + + + + Sbjct: 325 DLTKFNKKLGKA------IVQKSDGTTLYLTRD-VGAAMDRY 359 >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8} Length = 337 Score = 30.7 bits (68), Expect = 0.80 Identities = 34/287 (11%), Positives = 64/287 (22%), Gaps = 32/287 (11%) Query: 15 PTGEPHIGTAYTALFNYL-IAKRTGGKFILRIED----TD--SKRSTLESENAVMQSLKW 67 P+GE HIG A+ ++ I ++ G I D T+ + + ++ +L Sbjct: 10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVN 69 Query: 68 CGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKR 127 D Q +V E F L M + + K Sbjct: 70 IAAGLDPEKVT-------------LFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKA 116 Query: 128 NIPSRYD-GHCLKLSSQEIERLSQEQ--------KKHVVRLTVPNQGSCVFQDKVYGEME 178 + G + Q + L + + + LT Sbjct: 117 SKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP 176 Query: 179 IPWNAVDMQVLLKSDGMP---TYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFN 235 + + DG + + + Sbjct: 177 QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEPEESIWQKIQHLPDDPQRIRLSDPGDPE 236 Query: 236 FPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLA 282 I L + + Y L + L+ L Sbjct: 237 RTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALR 283 >3iu7_A Methionine aminopeptidase; enzyme-inhibitor complex, cobalt, hydrolase, metal-binding, protease; HET: FCD; 1.40A {Mycobacterium tuberculosis} PDB: 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A Length = 288 Score = 30.6 bits (68), Expect = 0.95 Identities = 7/29 (24%), Positives = 12/29 (41%) Query: 223 SVPKHILLYQYFNFPIPEFIHLPLIKNPD 251 VP I +Y P + P ++ P+ Sbjct: 20 PVPNWIARPEYVGKPAAQEGSEPWVQTPE 48 >3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 1jql_A* 1jqj_A* 3f1v_A* Length = 366 Score = 29.4 bits (65), Expect = 1.6 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 22/98 (22%) Query: 347 MK---EKDRLTQALTLAQSRITTLSALPQMTDFLFKSD---LHLTA-------------- 386 MK E++ L + L + LP + + L + L LT Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 387 --ESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIE 422 +T + + DI + E E+ + E + Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML 98 >1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A Length = 146 Score = 28.5 bits (64), Expect = 3.2 Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Query: 397 EEIIDILKTTQEEFEVIQIWKRENIETAL-RNVAQHREKSLKIIVKPLFLAITGSKYSLP 455 +E++ +++ E + + ++ + E L + Q + + +I+ L S+ Sbjct: 30 DELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLT----HTSVA 85 Query: 456 LFDSIEILGRSVV 468 L D+ L ++ Sbjct: 86 LRDACAELSAPLI 98 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.4 bits (62), Expect = 3.7 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 15/68 (22%) Query: 115 ERLEEMRRAQRKRNIPSRYDGHCLKLSSQE--------IERLSQEQKKHVVRLTVPNQGS 166 E + + R QRKR D K+ QE +E +Q Q + V + + N+ Sbjct: 85 ESIRKWREEQRKR--LQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-- 139 Query: 167 CVFQDKVY 174 DK + Sbjct: 140 --IADKAF 145 >1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 Length = 132 Score = 28.5 bits (63), Expect = 3.9 Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 10/72 (13%) Query: 260 NPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDK 319 + +S+ E L+ F + + G Sbjct: 23 DTSSLRAA--GRTGWEDLVRKCIYAFFQP-------QGREPSYARQLFQEVMTRGTASSP 73 Query: 320 QKLDWL-NGRWI 330 L +G + Sbjct: 74 SYRFILNDGTML 85 >1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral protein; HET: NAG; 3.05A {Human parainfluenza virus 3} Length = 490 Score = 28.0 bits (62), Expect = 4.8 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 185 DMQVLLKSDGMPTY-HLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF 234 D + L+ +P L N + I++ + EW +P HI+ F Sbjct: 255 DYSITLQVR-LPLLTRLLNTQIYRVDSISYNIQNREWYIPLPSHIMTKGAF 304 >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Score = 27.5 bits (60), Expect = 6.7 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 10/43 (23%) Query: 13 PSPTGEPHIGTAYTALFNYLIA------KRTGGKFILRIEDTD 49 P G H+G ++ A +R G + I D Sbjct: 27 PYANGSIHLGHML----EHIQADVWVRYQRMRGHEVNFICADD 65 >1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1 Length = 302 Score = 26.9 bits (59), Expect = 9.9 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 16/67 (23%) Query: 91 KNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQ 150 + I+ V + ++ ++C C+ E+ + L +E+E + + Sbjct: 224 ERIFGEKVGFVETAEIKYKCDCNREKAKNALLV----------------LDKKELEDMRK 267 Query: 151 EQKKHVV 157 E K VV Sbjct: 268 EGKGEVV 274 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,270,262 Number of extensions: 201756 Number of successful extensions: 583 Number of sequences better than 10.0: 1 Number of HSP's gapped: 542 Number of HSP's successfully gapped: 49 Length of query: 492 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 396 Effective length of database: 3,365,806 Effective search space: 1332859176 Effective search space used: 1332859176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.8 bits)