RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 449 bits (1157), Expect = e-127
Identities = 167/481 (34%), Positives = 267/481 (55%), Gaps = 31/481 (6%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
VRVR APSPTG H+G A TALFN++ A++ GGKFILRIEDTD++RS+ E E +++SL+
Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
WCGL+WDEGPDIGG +GPYRQSER IY+ Y + L+E K A+ E + +
Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 249
Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186
+ GH ++ V G F+D + G ME + ++
Sbjct: 250 YPHEYKEKGHP-----------------VTIKFKVLP-GKTSFEDLLKGYMEFDNSTLED 291
Query: 187 QVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246
+++KS+G PTY+ A V+DDHLM+I+HV RGE+ +S+ PK +++Y+ F + P F+H+PL
Sbjct: 292 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351
Query: 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306
I D++ LSKR TS+ ++ G L AL+N+LALL + DE+ +++ + FD
Sbjct: 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRV--EGDEIFTIEEKLQSFD 409
Query: 307 LHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDRLTQALT-------- 358
+S G +FD QKL+W+NG+ +R ++ + +W K + ++
Sbjct: 410 PKDISNKGVIFDYQKLEWVNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETL 468
Query: 359 -LAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417
+ + ++ TLS L + D + + L EE +L+ ++ F+ + W
Sbjct: 469 RICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEK-FLKREEAERVLEEAKKAFKDLNSWN 527
Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477
E IE LR++++ S K++ + + A+TG + LF++IE+LG+ RL +
Sbjct: 528 MEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQ 587
Query: 478 L 478
Sbjct: 588 F 588
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima}
Length = 488
Score = 430 bits (1108), Expect = e-121
Identities = 168/483 (34%), Positives = 269/483 (55%), Gaps = 31/483 (6%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
VRVR APSPTG H+G A TALFN++ A++ GGKFILRIEDTD++RS+ E E +++SL+
Sbjct: 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
WCGL+WDEGPDIGG +GPYRQSER IY+ Y + L+E K A+ E + +
Sbjct: 86 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 145
Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186
+ GH ++ V G F+D + G ME + ++
Sbjct: 146 YPHEYKEKGHP-----------------VTIKFKVLP-GKTSFEDLLKGYMEFDNSTLED 187
Query: 187 QVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246
+++KS+G PTY+ A V+DDHLM+I+HV RGE+ +S+ PK +++Y+ F + P F+H+PL
Sbjct: 188 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 247
Query: 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306
I D++ LSKR TS+ ++ G L AL+N+LALL + DE+ +++ + FD
Sbjct: 248 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLG--WRVEGDEIFTIEEKLQSFD 305
Query: 307 LHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDR---------LTQAL 357
+S G +FD QKL+W+NG+ +R ++ + +W K + ++ L
Sbjct: 306 PKDISNKGVIFDYQKLEWVNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETL 364
Query: 358 TLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417
+ + ++ TLS L + D + + L EE +L+ ++ F+ + W
Sbjct: 365 RICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEK-FLKREEAERVLEEAKKAFKDLNSWN 423
Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477
E IE LR++++ S K++ + + A+TG + LF++IE+LG+ RL +
Sbjct: 424 MEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQ 483
Query: 478 LVS 480
+
Sbjct: 484 FLK 486
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 410 bits (1055), Expect = e-115
Identities = 196/478 (41%), Positives = 285/478 (59%), Gaps = 18/478 (3%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
V RIAPSPTG+PH+GTAY ALFNY A+R GG+FI+RIEDTD R +E ++ +LK
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
W GL++DEGPD+GG +GPYRQSER +YQ Y + LL++ A+R F + E LE++R+ +
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186
YDG + +E E ++ + HV+RL VP G+ +D++ G + +
Sbjct: 122 ------YDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175
Query: 187 QVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPL 246
VLLKSDG PTYHLANV+DDHLM +T V R EEW+ S P H+LLY+ F + P F H+PL
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 247 IKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306
++NPDK+K+SKR++ TS+ +Y A G+LPEAL N+L L+ D E+ +++ I F
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSM-PDGREIFTLEEFIQAFT 294
Query: 307 LHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEK-------DRLTQALTL 359
+S G VFD +KL W+NG++IRE LS E RV +++E L +A+ L
Sbjct: 295 WERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVEL 354
Query: 360 AQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRE 419
+ R TL P+ +LF D ++ ++ + EE + +LK + W
Sbjct: 355 MRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKL----EEGLPLLKELYPRLRAQEEWTEA 410
Query: 420 NIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAIA 477
+E LR A + L + +PL A+TGS + LF+ + +LG+ RL A+A
Sbjct: 411 ALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERALA 468
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA
ligase 1, glurs 1, structural genomics; 2.34A
{Thermotoga maritima}
Length = 481
Score = 391 bits (1004), Expect = e-109
Identities = 165/478 (34%), Positives = 255/478 (53%), Gaps = 20/478 (4%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
VRVR APSPTG H+G A TALFN+L A++ GKFILRIEDTD +RS E E +M+SL+
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLR 73
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
W GL WDEGPD+GG +GPYRQSER IY+ + + L+++ A+ + E +EEMR
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLS 133
Query: 127 RNIPSRYDGHCLK--LSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV 184
Y + + + ++ + V +P + + V GE+ A+
Sbjct: 134 EGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDV-VKGEVVFKTGAI 192
Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244
V+++S+G+PTY+ A V+DD LM+ITHV RG++ +S+ + + LY+ F P F H+
Sbjct: 193 GDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHV 252
Query: 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHH 304
I PD KLSKR TS+ + MGYLPEAL+N+LALL + EL+ +++LI
Sbjct: 253 STILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLG-WSHPEGKELLTLEELISS 311
Query: 305 FDLHHLSKAGAVFDKQKLDWLNGRWIREKLST------TEFLSRVSQWMKEKDRLTQALT 358
F L LS A+FD QKL W+NG ++R F + + +++ + L
Sbjct: 312 FSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPFFEKAGIKIIDEEYFKKVLE 371
Query: 359 LAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKR 418
+ + R+ LS P+ + F F+ + PEE+ ++ +EE + ++ W
Sbjct: 372 ITKERVEVLSEFPEESRFFFEDPAPVEI---------PEEMKEVFSQLKEELQNVR-WTM 421
Query: 419 ENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHAI 476
E I + V + K L +TG + L + I +LG+ + R+ ++
Sbjct: 422 EEITPVFKKVLKQHGVKPKEFYMTLRRVLTGREEGPELVNIIPLLGKEIFLRRIERSL 479
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide- binding, protein biosynthesis;
HET: GLU; 2.45A {Synechococcus elongatus}
Length = 492
Score = 348 bits (894), Expect = 1e-96
Identities = 161/491 (32%), Positives = 231/491 (47%), Gaps = 26/491 (5%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
VRVR+APSPTG HIGTA TA+FN+L A+ GGKFILRIEDTD +RS E +++ L+
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
W GL WDE GPY QS+R ++Y+ +Q LL+K LA+ C+C+ E LE +R Q+
Sbjct: 62 WLGLTWDE--------GPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKA 113
Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDM 186
+ RYD L+ +E + V+R + + +QD V G + +
Sbjct: 114 KGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGG 173
Query: 187 QV------LLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240
+ G P Y+L V+DD M IT V RGE+ I + PK ILLY+ P
Sbjct: 174 DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPN 233
Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ 300
F H PLI N KLSKR TSIS + AMGYL AL N++ LL E EL +
Sbjct: 234 FAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDL 293
Query: 301 LIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREK---------LSTTEFLSRVSQWMKEKD 351
HF ++KAGA FD KL+WLN ++I++ + + +++
Sbjct: 294 AAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDRP 353
Query: 352 RLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFE 411
L L Q + TL F + +E+ L + IL E
Sbjct: 354 WLFDLAQLLQPGLNTLREAIDQGAVFFIPSVTFDSEAMAQ--LGQPQSATILAYLLEHLP 411
Query: 412 VIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILG-RSVVYF 470
+ ++ A+ ++ L A+TG+ + L + +IL R
Sbjct: 412 AEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWDEP 471
Query: 471 RLRHAIALVSS 481
RL A+ +
Sbjct: 472 RLAAALKQAQT 482
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Length = 498
Score = 335 bits (859), Expect = 2e-92
Identities = 162/492 (32%), Positives = 244/492 (49%), Gaps = 18/492 (3%)
Query: 1 MISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENA 60
M ++ VRVR PSPTG PH+G TALFN+ A+ TGG F+ RIEDTD++R + ES A
Sbjct: 1 MTATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLA 60
Query: 61 VMQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEM 120
++ +L+W GL+WDEGP++GG YGPYRQS+R IY+ + LL A+ F + E +E
Sbjct: 61 LLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEAR 120
Query: 121 RRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIP 180
A + YD L+ + E ++ VVRL +P + D V G +
Sbjct: 121 HVAAGRNPKL-GYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP-DDDLAWNDLVRGPVTFA 178
Query: 181 WNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-----N 235
+V L ++ G P Y L N DD LMKITHV RGE+ + S P+ + L+Q
Sbjct: 179 AGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVA 238
Query: 236 FPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDEL 295
IP+F HLP + KLSKR +++ + G++PE L+N+LALL DD +L
Sbjct: 239 ERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLG-WSIADDHDL 297
Query: 296 MDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIRE-------KLSTTEFLSRVSQWMK 348
+ +++ FD+ ++ + A FD++K D LN IR +
Sbjct: 298 FGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHLDTHGHHIAL 357
Query: 349 EKDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQE 408
++ A L Q+RI L ++ F + ++ + +L
Sbjct: 358 DEAAFAAAAELVQTRIVVLGDAWELLKFFNDDQYVIDPKAAA--KELGPDGAAVLDAALA 415
Query: 409 EFEVIQIWKRENIETALRN-VAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSV 467
+ W IE AL++ + + + P+ +A TG+ S PLF+S+E+LGR
Sbjct: 416 ALTSVTDWTAPLIEAALKDALIEGLALKPRKAFSPIRVAATGTTVSPPLFESLELLGRDR 475
Query: 468 VYFRLRHAIALV 479
RLR A LV
Sbjct: 476 SMQRLRAARQLV 487
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 302 bits (774), Expect = 1e-82
Identities = 66/346 (19%), Positives = 132/346 (38%), Gaps = 29/346 (8%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
+V R P P+G H+G + +L ++ A++ GG+F LR++DT+ + + E +++ L
Sbjct: 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
KW GL+W E Y S+ + Y Y + L+ + A+ S E L +R
Sbjct: 126 KWLGLDWGE--------HFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNAT 177
Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQK---KHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
PS Y ++ + + R+ + +HV+R + + +
Sbjct: 178 TPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKP 237
Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242
+ P Y + + D + +TH E++ + + L + NF
Sbjct: 238 HFRTSD--EWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQ 295
Query: 243 HLPLIKNPDKSKLSKRR----------------NPTSISYYSAMGYLPEALINFLALLFV 286
+ + + + SKR+ ++ +G PEA+ F A + V
Sbjct: 296 YEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGV 355
Query: 287 HKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIRE 332
++ ++ + + H + AV D K+ N +
Sbjct: 356 SRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKT 401
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 297 bits (761), Expect = 4e-81
Identities = 70/351 (19%), Positives = 122/351 (34%), Gaps = 31/351 (8%)
Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64
+ V R P P G HIG A + N+ IA+ G+ LR +DT+ + +E ++
Sbjct: 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 84
Query: 65 LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124
++W G +W S+ + Y L+ K LA+ + E++ E R
Sbjct: 85 VEWLGFHWSG--------NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTL 136
Query: 125 RKRNIPSRYDGHCLKLSSQEIER----LSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIP 180
+ S Y ++ + E+ +E K + V +D V +
Sbjct: 137 TQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRI--- 193
Query: 181 WNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFP--- 237
A Q K P Y + I D L ITH E+ + + + P
Sbjct: 194 KFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHP 253
Query: 238 -------------IPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALL 284
+ L L+ + +IS GY ++ F +
Sbjct: 254 RQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRI 313
Query: 285 FVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLS 335
V K ++ E+ ++ I + +A AV D KL N + E ++
Sbjct: 314 GVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVT 364
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
Length = 298
Score = 271 bits (695), Expect = 2e-73
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 37/327 (11%)
Query: 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAV 61
++ ++ R APSP+GE H G+ AL +YL A+ G++++RIED D R + +
Sbjct: 1 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETI 60
Query: 62 MQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMR 121
++ L+ GL+WD QS+R + Y+ + L E+ L++ C C+ R++ +
Sbjct: 61 LRQLEHYGLHWD--------GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG 112
Query: 122 RAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPW 181
+ VR+ + +
Sbjct: 113 GIYDGHCRVLHHGPDN-----------------AAVRIRQQHPVTQFTDQLRGIIHADEK 155
Query: 182 NAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEF 241
A + ++ + DG+ Y+LA V+DDH +T + RG + I + I LYQ F + +P++
Sbjct: 156 LAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDY 215
Query: 242 IHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL 301
IHLPL NP +KLSK+ + ++ G LI L L ++E + ++Q+
Sbjct: 216 IHLPLALNPQGAKLSKQNHAPALP----KGDPRPVLIAALQFL-GQQAEAHWQDFSVEQI 270
Query: 302 ----IHHFDLHHLSKAGAV---FDKQK 321
+ ++ L + ++ V F
Sbjct: 271 LQSAVKNWRLTAVPESAIVNSTFSNAS 297
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 260 bits (666), Expect = 4e-70
Identities = 83/337 (24%), Positives = 142/337 (42%), Gaps = 31/337 (9%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
+V +R AP+P+G HIG A A+ N+ A++ G+ ILRIEDTD +R E+ + + L
Sbjct: 96 EVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADL 155
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
+W G+ WDE QS+R Y Y + L+E+ A+ C C E E++
Sbjct: 156 EWLGVEWDE---------TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGE 206
Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVP-NQGSCVFQDKVYGEMEIPWNAV 184
+ S L+ E ++ VVR+ N + +D V + A
Sbjct: 207 ACHCRSLGFRENLQR---WREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIV---EAE 260
Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244
+ + P + + +DDHL+ +THV RG++ +++ K LY++ + PEFIH
Sbjct: 261 HPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHY 320
Query: 245 PLIKNPD------KSKLSKRRNPTS---------ISYYSAMGYLPEALINFLALLFVHKS 289
+K D ++ R S + + G PEA+ + + V +
Sbjct: 321 GRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIA 380
Query: 290 EDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLN 326
+ + L + D KL+ +
Sbjct: 381 DSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVG 417
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 200 bits (508), Expect = 6e-52
Identities = 66/507 (13%), Positives = 135/507 (26%), Gaps = 46/507 (9%)
Query: 6 KVRVRIAPSPTGEPHIGTA-----YTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENA 60
K V +P+G H+G + + L K + I +D D R +
Sbjct: 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ 80
Query: 61 VMQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQ--PYVQNLLEKKLAFRCFCSTERLE 118
+ + G+ E PD G + Y + + + + ++ A + E E
Sbjct: 81 EWK--DYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSE 138
Query: 119 EMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEME 178
E+R A KR+ +++ Q + + + +
Sbjct: 139 EIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYK 198
Query: 179 IPWNAVDMQVLLKSDGMPTYH-------LANVIDDHLMKITHVARGEEWISSVPKHILLY 231
P + + + +D H+ G + +
Sbjct: 199 CPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEII---K 255
Query: 232 QYFNFPIPEFIHLP-LIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSE 290
+ + P + + K K+S + + P + A +K
Sbjct: 256 EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 315
Query: 291 DDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWI---------REKLSTTEFLS 341
D + + L F+ + + + K D R ++ F
Sbjct: 316 KIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELRRTYELSMPKKPERLVAQAPFRF 373
Query: 342 RVSQWMKEKDRLTQALTLAQSRITTLSALPQMT---------------DFLFKSDLHLTA 386
+ + + L + D+ +
Sbjct: 374 LAVLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKYAPEDVKFSI 433
Query: 387 ESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLA 446
E++ + + E E + + E L VA+ R S + L+
Sbjct: 434 LEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLYRL 493
Query: 447 ITGSKYSLPLFDSIEILGRSVVYFRLR 473
G + L + L RS V RLR
Sbjct: 494 FIGKERGPRLASFLASLDRSFVIKRLR 520
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 48.4 bits (115), Expect = 4e-06
Identities = 59/417 (14%), Positives = 109/417 (26%), Gaps = 171/417 (41%)
Query: 131 SRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV------ 184
++ G+ S +E Q V+ L + + F++ +I +A+
Sbjct: 62 GKFLGYV----SSLVEPSKVGQFDQVLNLCL-TE----FENCYLEGNDI--HALAAKLLQ 110
Query: 185 --DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLY-----Q----- 232
D ++ + + Y A ++ + + + + L Q
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 233 YFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDD 292
YF E L Y L LI F A
Sbjct: 169 YFE----ELRDL----------------------YQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 293 DELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFL--SRVSQWMKEK 350
+ + ++ L+WL ++L +S
Sbjct: 203 LDAEKVFT--QGLNI--------------LEWLEN---PSNTPDKDYLLSIPIS------ 237
Query: 351 DR-----LTQALTLAQSRIT--TLSALP-QMTDFLFKSDLH----LTAESFKSTALCPEE 398
+ Q LA +T L P ++ +L + H +TA +
Sbjct: 238 --CPLIGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA-VAIAET----- 286
Query: 399 IIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSK------- 451
+ E F ++ A+ + LF I G +
Sbjct: 287 ------DSWESFF-------VSVRKAIT---------V------LF-FI-GVRCYEAYPN 316
Query: 452 YSLP---LFDSIE-----------I--LGRSVVYFRL----------RH-AIALVSS 481
SLP L DS+E I L + V + + I+LV+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Score = 35.3 bits (81), Expect = 0.029
Identities = 44/249 (17%), Positives = 74/249 (29%), Gaps = 78/249 (31%)
Query: 253 SKLSKRRNPTSISY----YSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLH 308
S R P ++S+ + + +P A F+A QL F
Sbjct: 2 DAYSTR--PLTLSHGSLEHVLL--VPTASF-FIA----------------SQLQEQF-NK 39
Query: 309 HLSKAGAVFDKQKLDWLNGRWIREKLSTTE----FLSRVSQWMKEKDRLTQALTLAQSRI 364
L + F E + E FL VS +
Sbjct: 40 ILPEPTEGFAADD----------EPTTPAELVGKFLGYVS------SLVEP--------- 74
Query: 365 TTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETA 424
S + Q L +L LT F++ L +I + +E + + +E I+
Sbjct: 75 ---SKVGQFDQVL---NLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 425 LRNVAQHREKSLKIIVKPLFLAITGSKYSL-PLFD---SIEILGRSVVYFR-LR--HAI- 476
+ + K LF A+ L +F + + YF LR +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD------DYFEELRDLYQTY 180
Query: 477 -ALVSSLVQ 484
LV L++
Sbjct: 181 HVLVGDLIK 189
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 42.6 bits (99), Expect = 2e-04
Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 18/203 (8%)
Query: 12 APSPTGEPHIGTAYTALFNYLIA---KRTGGKFILRIEDTDSKRSTLESENAVMQSLKWC 68
+ +P E H+G IA G + ++ D+ R E+ + +L+
Sbjct: 111 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAET----LFALRHY 166
Query: 69 GLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKL-AFRCFCSTERLEEMRRAQRK- 126
GL WD G ++ +Q +E+ L A E + + AQ
Sbjct: 167 GLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMAT 226
Query: 127 ------RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIP 180
R ++ ++ + EQ HV R + D IP
Sbjct: 227 MHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDA---SPVIP 283
Query: 181 WNAVDMQVLLKSDGMPTYHLANV 203
VLL+S+G TY+ ++
Sbjct: 284 GLEDPFFVLLRSNGTATYYAKDI 306
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation,
ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC
5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP:
a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 33.5 bits (76), Expect = 0.10
Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 35/222 (15%)
Query: 12 APSPTGEPHIGTAYTALFNYLIAK--RTGGKFILR---IEDTDSKRSTLESENAVMQSLK 66
+P+ H G + + +A G ++R + D + L +
Sbjct: 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLL------AVGFE 204
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
G D K+I + LE+ + +R+E+ K
Sbjct: 205 RYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALK 264
Query: 127 ----------RNIPSRYDGHCLKLSSQEIER-LSQEQKKHVVR------LTVPNQGSCVF 169
Y +K E +S+E + LT ++G+ +
Sbjct: 265 IWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLI 324
Query: 170 QDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKI 211
+ + ++ KSDG Y + + + +
Sbjct: 325 DLTKFNKKLGKA------IVQKSDGTTLYLTRD-VGAAMDRY 359
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural genomics, NPPSFA; 2.50A {Thermus
thermophilus HB8}
Length = 337
Score = 30.7 bits (68), Expect = 0.80
Identities = 34/287 (11%), Positives = 64/287 (22%), Gaps = 32/287 (11%)
Query: 15 PTGEPHIGTAYTALFNYL-IAKRTGGKFILRIED----TD--SKRSTLESENAVMQSLKW 67
P+GE HIG A+ ++ I ++ G I D T+ + + ++ +L
Sbjct: 10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVN 69
Query: 68 CGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKR 127
D Q +V E F L M + + K
Sbjct: 70 IAAGLDPEKVT-------------LFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKA 116
Query: 128 NIPSRYD-GHCLKLSSQEIERLSQEQ--------KKHVVRLTVPNQGSCVFQDKVYGEME 178
+ G + Q + L + + + LT
Sbjct: 117 SKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP 176
Query: 179 IPWNAVDMQVLLKSDGMP---TYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFN 235
+ + DG + + +
Sbjct: 177 QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEPEESIWQKIQHLPDDPQRIRLSDPGDPE 236
Query: 236 FPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLA 282
I L + + Y L + L+ L
Sbjct: 237 RTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALR 283
>3iu7_A Methionine aminopeptidase; enzyme-inhibitor complex, cobalt,
hydrolase, metal-binding, protease; HET: FCD; 1.40A
{Mycobacterium tuberculosis} PDB: 3iu8_A* 3iu9_A* 1y1n_A
1yj3_A
Length = 288
Score = 30.6 bits (68), Expect = 0.95
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 223 SVPKHILLYQYFNFPIPEFIHLPLIKNPD 251
VP I +Y P + P ++ P+
Sbjct: 20 PVPNWIARPEYVGKPAAQEGSEPWVQTPE 48
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp,
DNA replication, rational drug design, antibiotic
target, transferase; HET: DNA 322; 1.64A {Escherichia
coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A*
1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 1jql_A*
1jqj_A* 3f1v_A*
Length = 366
Score = 29.4 bits (65), Expect = 1.6
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 22/98 (22%)
Query: 347 MK---EKDRLTQALTLAQSRITTLSALPQMTDFLFKSD---LHLTA-------------- 386
MK E++ L + L + LP + + L + L LT
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 387 --ESFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIE 422
+T + + DI + E E+ + E +
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML 98
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta
protein, lyase, aromatic amino acid biosynthesis; 1.5A
{Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB:
1h0r_A* 1h0s_A* 2dhq_A
Length = 146
Score = 28.5 bits (64), Expect = 3.2
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 397 EEIIDILKTTQEEFEVIQIWKRENIETAL-RNVAQHREKSLKIIVKPLFLAITGSKYSLP 455
+E++ +++ E + + ++ + E L + Q + + +I+ L S+
Sbjct: 30 DELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLT----HTSVA 85
Query: 456 LFDSIEILGRSVV 468
L D+ L ++
Sbjct: 86 LRDACAELSAPLI 98
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.4 bits (62), Expect = 3.7
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 115 ERLEEMRRAQRKRNIPSRYDGHCLKLSSQE--------IERLSQEQKKHVVRLTVPNQGS 166
E + + R QRKR D K+ QE +E +Q Q + V + + N+
Sbjct: 85 ESIRKWREEQRKR--LQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-- 139
Query: 167 CVFQDKVY 174
DK +
Sbjct: 140 --IADKAF 145
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator,
complex, LXXLL motif, transcriptional regulation; 2.2A
{Mus musculus} SCOP: d.110.3.8
Length = 132
Score = 28.5 bits (63), Expect = 3.9
Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 10/72 (13%)
Query: 260 NPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDK 319
+ +S+ E L+ F + + G
Sbjct: 23 DTSSLRAA--GRTGWEDLVRKCIYAFFQP-------QGREPSYARQLFQEVMTRGTASSP 73
Query: 320 QKLDWL-NGRWI 330
L +G +
Sbjct: 74 SYRFILNDGTML 85
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral protein; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 28.0 bits (62), Expect = 4.8
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 185 DMQVLLKSDGMPTY-HLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF 234
D + L+ +P L N + I++ + EW +P HI+ F
Sbjct: 255 DYSITLQVR-LPLLTRLLNTQIYRVDSISYNIQNREWYIPLPSHIMTKGAF 304
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
metal-binding, nucleotide-binding; HET: CIT; 1.40A
{Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 27.5 bits (60), Expect = 6.7
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 13 PSPTGEPHIGTAYTALFNYLIA------KRTGGKFILRIEDTD 49
P G H+G ++ A +R G + I D
Sbjct: 27 PYANGSIHLGHML----EHIQADVWVRYQRMRGHEVNFICADD 65
>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI; HET: UNL; 2.20A {Thermotoga maritima} SCOP:
d.193.1.1 g.81.1.1
Length = 302
Score = 26.9 bits (59), Expect = 9.9
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 91 KNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQ 150
+ I+ V + ++ ++C C+ E+ + L +E+E + +
Sbjct: 224 ERIFGEKVGFVETAEIKYKCDCNREKAKNALLV----------------LDKKELEDMRK 267
Query: 151 EQKKHVV 157
E K VV
Sbjct: 268 EGKGEVV 274
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,270,262
Number of extensions: 201756
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 49
Length of query: 492
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 396
Effective length of database: 3,365,806
Effective search space: 1332859176
Effective search space used: 1332859176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)