HHsearch alignment for GI: 255764514 and conserved domain: TIGR00611
>TIGR00611 recf DNA replication and repair protein RecF; InterPro: IPR001238 All proteins in this family, including recF, for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. RecF is involved in DNA metabolism and is required for recombinational DNA repair and for induction of the SOS response , . ; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.63 E-value=3.5e-15 Score=119.06 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=98.6
Q ss_pred CCEEE---------EECCEEEEEEEEE---CCCCEE-EEECCCCCCH--HHHHHHHHHHHCCCC-----CCCCCCCCCCE
Q ss_conf 92599---------9422789999887---389818-9988999788--899999998714732-----53311289725
Q gi|255764514|r 1 MTRLS---------IYNIVLIESLDID---FSAGLS-ILSGDTGSGK--SILLDALILVTGGRG-----DGGLVRRHAEK 60 (554)
Q Consensus 1 L~~L~---------i~Nf~~i~~~~i~---f~~Gl~-vItGetGaGK--S~ildAl~~~lG~r~-----~~~~Ir~g~~~ 60 (554)
T Consensus 3 ~~~L~rPCrCGCkPl~~FRNy~~v~L~rCvl~p~~Nq~~~G~NgqGKrPTnllEAiy~L~~~rShR~~~~~~lIr~~~~~ 82 (399)
T TIGR00611 3 LSRLERPCRCGCKPLKDFRNYDEVDLERCVLSPGVNQVFVGPNGQGKRPTNLLEAIYYLALGRSHRTSRDKELIRFGAEA 82 (399)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCE
T ss_conf 30017755567756888778645010020117887448876788986407899999998744435442056301127861
Q ss_pred EEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCEE-EEECCEEEECHHHHHHHHHHHCCCCCCCHHHHHH--
Q ss_conf 8999999728973788888747898888389999994389779-9999988410112221110000012200000000--
Q gi|255764514|r 61 GQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRTK-AYVNDQVVSVNFMRAVGSLLIEIHSQHADRSLLD-- 137 (554)
Q Consensus 61 a~Ve~~F~~~~~~~~~~~~~~~~~~~~~~~iirR~i~~~GkS~-~~INg~~v~~~~L~~l~~~lidi~gQ~e~~~Ll~-- 137 (554)
T Consensus 83 ~~~~g~~~~~~~----------------~~~~~l~~~~~~k~~~~~~n~~~~~g~k~~dl~g~L~~~LfaPEdL~Lv~G~ 146 (399)
T TIGR00611 83 AVIEGRVSKEDR----------------EVTIDLEILLKKKGKKAKVNILGQDGNKLSDLAGLLPVVLFAPEDLTLVKGS 146 (399)
T ss_pred EEEEEEEEECCC----------------EEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 799999980871----------------7898765873003662587416555530998987412032078872101588
Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 367877776-6300001389999999999999988
Q gi|255764514|r 138 VQGHRKILD-SYADIDLSLCELGTLYRHWCCTADA 171 (554)
Q Consensus 138 ~~~q~~lLD-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (554)
T Consensus 147 P~~RRrFLD~~l~~~~--~~~~~~~~s~y~r~LkQ 179 (399)
T TIGR00611 147 PSVRRRFLDWELFQVS--RPVYLSAWSDYQRVLKQ 179 (399)
T ss_pred HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_conf 6567888315877623--15789999864269998