HHsearch alignment for GI: 255764514 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.83 E-value=0.00022 Score=47.83 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECHHH-HHHHCCCEEEEE
Q ss_conf 40621579999999998436689976998034468887999999999999730--593999808379-865017617999
Q gi|255764514|r 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSK--KIQLLAVTHAPQ-VAARADRHFLVY 503 (554)
Q Consensus 427 iaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~--~~Qvi~ITH~pq-vAa~a~~h~~v~ 503 (554)
T Consensus 427 ~LSGGq~QRvaiAraL~----~~P~vlilDEPT~glD~~~~~~i~~~l~~~~~~~g~tvi~iShDl~~~~~~~dRv~vm~ 502 (520)
T TIGR03269 427 ELSEGERHRVALAQVLI----KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502 (520)
T ss_pred HCCHHHHHHHHHHHHHH----HCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 18999999999999999----79898999386011338999999999999998329899997788899998699999997
Q ss_pred EEECCCCCCEEEEEEEECCHHHHHHH
Q ss_conf 96216875258999997598899999
Q gi|255764514|r 504 KTNKPDDTQRIETYVAVLTPQERREE 529 (554)
Q Consensus 504 K~~~~~~~~~~~~~i~~l~~~~r~~E 529 (554)
T Consensus 503 ~----G---~---iv~~g~~~ei~~e 518 (520)
T TIGR03269 503 D----G---K---IVKIGDPEEIVEE 518 (520)
T ss_pred C----C---E---EEEEECHHHHHHC
T ss_conf 9----9---9---9999878998327