HHsearch alignment for GI: 255764514 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.02 E-value=5.2e-05 Score=51.98 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=58.6
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECHHHHHH-HCCCEEEEE
Q ss_conf 406215799999999984366899769980344688879999999999997305-93999808379865-017617999
Q gi|255764514|r 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKK-IQLLAVTHAPQVAA-RADRHFLVY 503 (554)
Q Consensus 427 iaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~-~Qvi~ITH~pqvAa-~a~~h~~v~ 503 (554)
T Consensus 142 ~LSgG~kqRl~iA~al~----~~P~illLDEPt~gLD~~~~~~i~~~i~~l~~~g~tiii~sH~l~~v~~lcdriivl~ 216 (224)
T cd03220 142 TYSSGMKARLAFAIATA----LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLE 216 (224)
T ss_pred CCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 46999999999999996----6999999918866569999999999999998589999998898899999699999998