HHsearch alignment for GI: 255764514 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.64 E-value=7.6e-05 Score=50.89 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=32.0
Q ss_pred CCEEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 227899998873898-18998899978889999999871
Q gi|255764514|r 8 NIVLIESLDIDFSAG-LSILSGDTGSGKSILLDALILVT 45 (554)
Q Consensus 8 Nf~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~~l 45 (554)
T Consensus 34 ~~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl~ 72 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 969876707898389899999799981999999997587