HHsearch alignment for GI: 255764514 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.09 E-value=3.2e-05 Score=53.36 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=59.0
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECHHHHH-HHCCCEEEEE
Q ss_conf 06215799999999984366899769980344688879999999999997305-9399980837986-5017617999
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKK-IQLLAVTHAPQVA-ARADRHFLVY 503 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~-~Qvi~ITH~pqvA-a~a~~h~~v~ 503 (554)
T Consensus 133 LSgG~~Qrv~iAraL~----~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tii~vtHdl~~~~~~~Drv~vl~ 206 (222)
T cd03224 133 LSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred CCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 8999999999999996----4999999938654799999999999999999569999999085899999699999997