HHsearch alignment for GI: 255764514 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.86  E-value=1.9e-05  Score=54.79  Aligned_cols=43  Identities=30%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             EEECCEEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             994227899998873898-1899889997888999999987147
Q gi|255764514|r    5 SIYNIVLIESLDIDFSAG-LSILSGDTGSGKSILLDALILVTGG   47 (554)
Q Consensus         5 ~i~Nf~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~~lG~   47 (554)
T Consensus         4 ~g~~~~aL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~   47 (176)
T cd03238           4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGK   47 (176)
T ss_pred             CCCCEECCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             77653546754878889989999999999899999988876103