HHsearch alignment for GI: 255764514 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.53 E-value=6.3e-07 Score=64.60 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=62.9
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCEEEEE
Q ss_conf 0621579999999998436689976998034468887999999999999730593999808379865017617999
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVY 503 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~~Qvi~ITH~pqvAa~a~~h~~v~ 503 (554)
T Consensus 99 LSgGqkqRv~iAral~----~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~itH~~~~l~~~D~Iivl~ 170 (178)
T cd03247 99 FSGGERQRLALARILL----QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLE 170 (178)
T ss_pred CCHHHHHHHHHHHHHH----HCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEE
T ss_conf 8999999999999996----49797672286556998999999999999839999999805898998699999998