HHsearch alignment for GI: 255764514 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.74 E-value=4.8e-05 Score=52.20 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=29.1
Q ss_pred EEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 7899998873898-18998899978889999999
Q gi|255764514|r 10 VLIESLDIDFSAG-LSILSGDTGSGKSILLDALI 42 (554)
Q Consensus 10 ~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~ 42 (554)
T Consensus 28 ~vL~~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~ 61 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 4374538998299999999999984999999996