HHsearch alignment for GI: 255764514 and conserved domain: cd03270

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.42  E-value=1.8e-06  Score=61.60  Aligned_cols=73  Identities=30%  Similarity=0.290  Sum_probs=59.5

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCCEEEEE
Q ss_conf             06215799999999984366899-76998034468887999999999999730-593999808379865017617999
Q gi|255764514|r  428 ASGGELSRFLLALKIVLVDQGSI-PTLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQVAARADRHFLVY  503 (554)
Q Consensus       428 aSGGE~Sr~~LAl~~~~~~~~~~-p~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqvAa~a~~h~~v~  503 (554)
T Consensus       138 LSGGq~QRv~iAraL~~---~~~~~lliLDEPTsgLD~~~~~~i~~~i~~l~~~G~Tvi~VsHd~~~~~~aDriivm~  212 (226)
T cd03270         138 LSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIG  212 (226)
T ss_pred             CCHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHCCEEEEEC
T ss_conf             89999999999999973---8987168832873337989999999999999976998999972578998489999944