HHsearch alignment for GI: 255764514 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.42 E-value=1.8e-06 Score=61.60 Aligned_cols=73 Identities=30% Similarity=0.290 Sum_probs=59.5
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCCEEEEE
Q ss_conf 06215799999999984366899-76998034468887999999999999730-593999808379865017617999
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSI-PTLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQVAARADRHFLVY 503 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~-p~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqvAa~a~~h~~v~ 503 (554)
T Consensus 138 LSGGq~QRv~iAraL~~---~~~~~lliLDEPTsgLD~~~~~~i~~~i~~l~~~G~Tvi~VsHd~~~~~~aDriivm~ 212 (226)
T cd03270 138 LSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIG 212 (226)
T ss_pred CCHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHCCEEEEEC
T ss_conf 89999999999999973---8987168832873337989999999999999976998999972578998489999944