HHsearch alignment for GI: 255764514 and conserved domain: cd03284

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.19  E-value=0.015  Score=35.82  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=13.6

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             8873898189988999788899999998
Q gi|255764514|r   16 DIDFSAGLSILSGDTGSGKSILLDALIL   43 (554)
Q Consensus        16 ~i~f~~Gl~vItGetGaGKS~ildAl~~   43 (554)
T Consensus        25 ~l~~~~~~~iiTGpN~sGKSt~Lk~igl   52 (216)
T cd03284          25 ELDPERQILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             EECCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9789845999989987745999999999