HHsearch alignment for GI: 255764514 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=0.00044 Score=45.85 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=59.3
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEECHHHHHH-HCCCEEEEE
Q ss_conf 06215799999999984366899769980344688879999999999997305--93999808379865-017617999
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKK--IQLLAVTHAPQVAA-RADRHFLVY 503 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~--~Qvi~ITH~pqvAa-~a~~h~~v~ 503 (554)
T Consensus 161 LSGGq~QRVaIARALa~----~P~iLLlDEPtsaLD~~~~~~i~~~l~~l~~~~~~T~i~VTHD~~eA~~laDrI~vm~ 235 (269)
T cd03294 161 LSGGMQQRVGLARALAV----DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK 235 (269)
T ss_pred HCHHHHHHHHHHHHHHC----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 49488889999999863----9989997587542599999999999999999749999999998999999799899998