HHsearch alignment for GI: 255764514 and conserved domain: pfam02463
>pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Probab=100.00 E-value=0 Score=391.33 Aligned_cols=118 Identities=23% Similarity=0.313 Sum_probs=107.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH
Q ss_conf 25633786520253223446543200110127899831135440621579999999998436689976998034468887
Q gi|255764514|r 385 LENVCFTVNITSDKEDISPDGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGG 464 (554)
Q Consensus 385 m~~a~f~i~~~~~~~~~~~~G~d~v~f~~s~n~g~~~~pl~kiaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G 464 (554)
T Consensus 1042 ~~gG~a~L~l~~-~~d~~~~G---i~i~~~p-pgK~~~~l~-~LSGGEKtL~ALaLlFAi~~~~PaPFyiLDEIDAaLD~ 1115 (1162)
T pfam02463 1042 ELGGSAELRLED-SDDPFSGG---IEISARP-PGKGVKNLD-NLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDD 1115 (1162)
T ss_pred CCCCEEEEECCC-CCCCCCCC---EEEEEEC-CCCCCCCHH-HHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 799537885079-99984889---6899989-489688968-84878899999999999986289837875486636669
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCEEEEEEEECC
Q ss_conf 99999999999973059399980837986501761799996216
Q gi|255764514|r 465 AVADAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVYKTNKP 508 (554)
Q Consensus 465 ~~a~~v~~~l~~ls~~~Qvi~ITH~pqvAa~a~~h~~v~K~~~~ 508 (554)
T Consensus 1116 ~Nv~~ia~~ik~~s~~sQFIvIS~r~~~~~~Ad~L~GVtm~e~G 1159 (1162)
T pfam02463 1116 QNVSRVANYLKELSKNAQFIVISLREEMLEKADRLVGVYMVENG 1159 (1162)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHEEEEEECCCC
T ss_conf 99999999999749999899986078999872375887878999