RPSBLAST alignment for GI: 255764514 and conserved domain: TIGR02169

>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164
 Score = 39.3 bits (92), Expect = 0.002
 Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 60/377 (15%)

Query: 17  IDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRR------HAEKGQVVAVFEIS 70
           I FS G +++SG  GSGKS + DA++   G      +            K          
Sbjct: 19  IPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNE--- 75

Query: 71  HLPALEILFA--EANLTLEKHVILRRVQFPDGRTKAY-VNDQVVSVNFMRAVGSLLIEIH 127
               + + F   +     E  V+ R     DG+   Y +N Q V ++          EIH
Sbjct: 76  --AYVTVTFKNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLS----------EIH 123

Query: 128 SQHADRSLL----------DVQG--------HRKILDSYADIDLSLCELGTLYRHWCCTA 169
              A   +           DV           RKI+D  A +     +            
Sbjct: 124 DFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKK----------E 173

Query: 170 DALKKYQEQKSSSQDVEFLRFSIDEL-QALAVQPGEENELVVMRSKILKQERIAVELSSI 228
            AL   +E +   +++E L   IDE  Q L     E  +    R + L +E+   E   +
Sbjct: 174 KAL---EELEEVEENIERLDLIIDEKRQQLERLRREREKA--ERYQALLKEKREYEGYEL 228

Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288
           + +          I   L  LE +  ++ + + +    L E ++ L +   +I+    E 
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288

Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLY 348
           Q   +E   I E    + ++ R  +    +L +  +++ +  A+I +   ++  LER + 
Sbjct: 289 QLRVKE--KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346

Query: 349 EARQAYDRVAQDISTKR 365
           E R+  D++ ++ +  +
Sbjct: 347 EERKRRDKLTEEYAELK 363