HHsearch alignment for GI: 255764515 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.81 E-value=5.3e-17 Score=121.26 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160-4656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQ-V~~l~~----~Gi~A~~l 87 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQ-VDQLEA----AGIRAAYL 87 (590)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHH--HHHHHC--CCCEEEECCHHHHHHHH-HHHHHH----CCCEEEHH
T ss_conf 0388889999999658867998538987106743--678865--99789978568889999-999997----59652044
Q ss_pred EC--CHHHHHHHH----CCCCCEEEECCCCHHH-HHHHCCCCCCCCEEECCCCCCCCCCC---CCCHHHHHHHHHHHHHC
Q ss_conf 58--978988873----0779869980642023-34420001132204404531002465---43115677776654305
Q gi|255764515|r 81 TG--TVKQRTKVL----KTPAVLYVINFENLGW-LVQELKGTWPFATIVVDESTKLKSFR---LRQGSKTARALAKPAWE 150 (458)
Q Consensus 81 ~g--~~~~r~~~~----~~~~~i~i~s~e~~~~-~~~~~~~~~~~~~iIiDEaH~lkn~~---~~~~s~~~~~l~~~~~~ 150 (458)
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l-g~l~~~~~~ 166 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL-GRLRAGLPN 166 (590)
T ss_pred HCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCHHHHHH-HHHHHHCCC
T ss_conf 2436787799999998649645999881363176899999708875699621777764177437768999-999851799
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002455554558999997424543320
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLD 230 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (458)
T Consensus 167 -~p~~AlTATA~~~v~~DI~~~L~l~~~~~~--------~---------------------------------------- 197 (590)
T COG0514 167 -PPVLALTATATPRVRDDIREQLGLQDANIF--------R---------------------------------------- 197 (590)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHCCCCCCEE--------E----------------------------------------
T ss_conf -977997378986789999998467886648--------7----------------------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 00010010011000345245368998889999998510334520223478888754203541000223430001343333
Q gi|255764515|r 231 IADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 310 (458)
Q Consensus 231 ~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~ 310 (458)
T Consensus 198 ----~sfdRpNi~~~v~~~~-~~~~q~~---------------------------------------------------- 220 (590)
T COG0514 198 ----GSFDRPNLALKVVEKG-EPSDQLA---------------------------------------------------- 220 (590)
T ss_pred ----ECCCCCHHHHHHHHCC-CHHHHHH----------------------------------------------------
T ss_conf ----1589852345564256-4788899----------------------------------------------------
Q ss_pred CHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 25665412488403422236788866410----------00265334458998764245885589984422111622001
Q gi|255764515|r 311 ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 311 ~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
T Consensus 221 fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT-~AFGMGIdKpd 298 (590)
T COG0514 221 FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT-NAFGMGIDKPD 298 (590)
T ss_pred HHHH-HCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCC
T ss_conf 9874-132468972899933775999999999779725775189889999999999716998689996-46247767888
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 78599990899898686445666620220203787752899998589
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
T Consensus 299 -VRfViH~~lP~s~EsYyQE~GRA-----GRDG~~a~--aill~~~~ 337 (590)
T COG0514 299 -VRFVIHYDLPGSIESYYQETGRA-----GRDGLPAE--AILLYSPE 337 (590)
T ss_pred -CEEEEEECCCCCHHHHHHHHHHC-----CCCCCCCE--EEEEECCC
T ss_conf -40799806998989999997135-----67877021--78860630