HHsearch alignment for GI: 255764515 and conserved domain: COG0553

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=97.68  E-value=0.00012  Score=46.36  Aligned_cols=174  Identities=23%  Similarity=0.221  Sum_probs=83.7

Q ss_pred             CCCHHHHHHHHH-HHH-CCCEEEEECCCCC--HHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             874789999999-996-7980999588998--6899999999999759-9949999160465699999999855888815
Q gi|255764515|r    2 NLAPHQTKIVDW-ILD-HKRCAIWASMGSG--KTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN   76 (458)
Q Consensus         2 ~L~p~Q~~~v~~-~~~-~~~~ll~~~~G~G--KT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~   76 (458)
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~-  161 (866)
T COG0553          84 ILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLR-AQWVVELLEKFNIRLA-  161 (866)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCCHH-
T ss_conf             21322036777766543034444310143333303332356666655543201103640245-5677877764155367-


Q ss_pred             EEEEECCHHHHHHHHCC-----CCCEEEECCCCHHHH---HHHCCCCCCC---CEEECCCCCCCCCCCC-----CCHHHH
Q ss_conf             99985897898887307-----798699806420233---4420001132---2044045310024654-----311567
Q gi|255764515|r   77 ISVITGTVKQRTKVLKT-----PAVLYVINFENLGWL---VQELKGTWPF---ATIVVDESTKLKSFRL-----RQGSKT  140 (458)
Q Consensus        77 ~~~~~g~~~~r~~~~~~-----~~~i~i~s~e~~~~~---~~~~~~~~~~---~~iIiDEaH~lkn~~~-----~~~s~~  140 (458)
T Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (866)
T COG0553         162 VLDKEGLR-YLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLE  240 (866)
T ss_pred             HHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf             77542224-44320122343222102444323676542000133202210023555405776412342111100245678


Q ss_pred             HHHHHHHHHCCC------EEEEECCCCHHHHCCCHHHHHHHCCC
Q ss_conf             777665430598------07996584023100101346775178
Q gi|255764515|r  141 ARALAKPAWESE------RFIELTGTPSPNGLIDLWGQIWFLDK  178 (458)
Q Consensus       141 ~~~l~~~~~~~~------~~l~LTgTPi~n~~~el~~ll~~l~~  178 (458)
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (866)
T COG0553         241 YELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDP  284 (866)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf             88866566404431122214441000433020000113201131