HHsearch alignment for GI: 255764515 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=100.00  E-value=6e-35  Score=229.95  Aligned_cols=349  Identities=17%  Similarity=0.199  Sum_probs=214.6

Q ss_pred             CCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             9874789999999996----798099958899868999999999997599949999160465699999999855888815
Q gi|255764515|r    1 MNLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN   76 (458)
Q Consensus         1 ~~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~   76 (458)
T Consensus        35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~  109 (442)
T COG1061          35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKFLLLN-DE  109 (442)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHHCCCC-CC
T ss_conf             8885999999999996222578679996799988999999999826----988999782999999999999734886-76


Q ss_pred             EEEEECCHHHHHHHHCCCCCEEEECCCCHHHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-E
Q ss_conf             999858978988873077986998064202334-42000113220440453100246543115677776654305980-7
Q gi|255764515|r   77 ISVITGTVKQRTKVLKTPAVLYVINFENLGWLV-QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER-F  154 (458)
Q Consensus        77 ~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~-~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~-~  154 (458)
T Consensus       110 ~g~~~~~~~~~~----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-------~~~~~~~~~-~~~~~~  176 (442)
T COG1061         110 IGIYGGGEKELE----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-------SYRRILELL-SAAYPR  176 (442)
T ss_pred             CCEECCCCCCCC----C-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHH-HCCCEE
T ss_conf             603368723357----7-748999838976415555403566675999752457847-------799999975-103104


Q ss_pred             EEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf             996584023100101346775178887753277887773695640330000245555455899999742454332000--
Q gi|255764515|r  155 IELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIA--  232 (458)
Q Consensus       155 l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--  232 (458)
T Consensus       177 LGLTATp~R~D~~~~~~l~~~~g~----------------------------------------------~vy~~~~~~l  210 (442)
T COG1061         177 LGLTATPEREDGGRIGDLFDLIGP----------------------------------------------IVYEVSLKEL  210 (442)
T ss_pred             EEEECCCCCCCCCCHHHHHHHCCC----------------------------------------------EEEECCHHHH
T ss_conf             677148724487752487740575----------------------------------------------5673358998


Q ss_pred             -CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             -0100100110003452453689988899999985103345202234788887542035410002234300013433332
Q gi|255764515|r  233 -DYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA  311 (458)
Q Consensus       233 -~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~  311 (458)
T Consensus       211 i~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~~~~~  272 (442)
T COG1061         211 IDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LRAEN-------------EARRIAIASERKIAA  272 (442)
T ss_pred             HHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCC-----HHHHH-------------HHHHHHHHHHHHHHH
T ss_conf             337875774999986236628777403155555555543100-----13456-------------777776642899999


Q ss_pred             HHHHHHCC-CCCEEEEHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf             56654124-8840342223678886641000---------2653344589987642458855899844221116220017
Q gi|255764515|r  312 LEVIIEKA-NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG  381 (458)
Q Consensus       312 l~~il~~~-~~~kviif~~~~~~~~~i~~~~---------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a  381 (458)
T Consensus       273 ~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~-~vl~EGvDiP~~  351 (442)
T COG1061         273 VRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTV-KVLDEGVDIPDA  351 (442)
T ss_pred             HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EEECCCCCCCCC
T ss_conf             9999875326886699975779999999986267742466578998899999999870895299996-141266578887


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCC--EEEEEEEECCCHHHHHHHHH
Q ss_conf             859999089989868644566662022020378775--28999985899689999999
Q gi|255764515|r  382 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYLIAQNTIDELVLQRL  437 (458)
Q Consensus       382 ~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~--v~v~~li~~~tide~i~~~~  437 (458)
T Consensus       352 -~~~i~~~~t~S~~~~~Q~lGR~LR~----~~~k~~~~~~~~~~~~~~~~~~~~~~~~  404 (442)
T COG1061         352 -DVLIILRPTGSRRLFIQRLGRGLRP----AEGKEDTLALDYSLVPDDLGEEDIARRR  404 (442)
T ss_pred             -CEEEEECCCCCHHHHHHHHHHHHCC----CCCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf             -5799977998799999996166347----8899965999996456764433266664