HHsearch alignment for GI: 255764515 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.2e-36 Score=240.14 Aligned_cols=427 Identities=16% Similarity=0.156 Sum_probs=240.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 987478999999999679809995889986899999999-9997599949999160465699999999855888815999
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS-YIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred CCHHHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHHCCCHHHEEE
T ss_conf 25889999999998644-83899528750799999999999874588-48996589517999999999985898433231
Q ss_pred EECC--HHHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8589--7898887307798699806420233442-000113220440453100246543115677776654305980799
Q gi|255764515|r 80 ITGT--VKQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 80 ~~g~--~~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~ 156 (458)
T Consensus 92 ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA--vGnyAYv~Va~~y~~~-~k~~~ilg 167 (542)
T COG1111 92 LTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA--VGNYAYVFVAKEYLRS-AKNPLILG 167 (542)
T ss_pred ECCCCCHHHHHHHHH-HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHC--CCCCHHHHHHHHHHHH-CCCCEEEE
T ss_conf 117778688999875-1778995638777687617667678058986235541--3760699999999982-56843798
Q ss_pred ECCCCHHHHCCCHHHHHHHCCCCCCCC-CCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_conf 658402310010134677517888775-327788777369564033000024555545589999974245433-------
Q gi|255764515|r 157 LTGTPSPNGLIDLWGQIWFLDKGKRLG-RVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS------- 228 (458)
Q Consensus 157 LTgTPi~n~~~el~~ll~~l~~~~~l~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------- 228 (458)
T Consensus 168 LTASPGs-~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~i--kV---~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 168 LTASPGS-DLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWI--KV---DLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred EECCCCC-CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEE--EC---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7238999-879999999837954289845788517775140424899--63---68589999999999999999999997
Q ss_pred ---------HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHH---H--HHHHHCCCCCCHHH-HHHHHHHH---------
Q ss_conf ---------200001001001100034524536899888999---9--99851033452022-34788887---------
Q gi|255764515|r 229 ---------LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQ---R--ELYCDLQGENIEAF-NSASKTVK--------- 284 (458)
Q Consensus 229 ---------~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~---~--~~~~~~~~~~~~~~-~~~~~~~~--------- 284 (458)
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNE-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 69532357310768999999899863576-17888999999999888899999985086999999999998750352077
Q ss_pred HHHCCCCCCCCC-----CCCCCHHCCCCCCCCHHHHHH----CCCCCEEEEHHHHHHHHHHHHHC-----------CC--
Q ss_conf 542035410002-----234300013433332566541----24884034222367888664100-----------02--
Q gi|255764515|r 285 CLQLANGAVYYD-----EEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKA-----------FP-- 342 (458)
Q Consensus 285 l~q~~~~~~~~~-----~~~~~~~~~~~k~~~l~~il~----~~~~~kviif~~~~~~~~~i~~~-----------~~-- 342 (458)
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQ 400 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQ 400 (542)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 89875382047999999974003688961899999999997238985599996147589999999985287520688611
Q ss_pred ------CCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCC
Q ss_conf ------65334458998764245885589984422111622001785999908998986864456666202202037877
Q gi|255764515|r 343 ------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 416 (458)
Q Consensus 343 ------~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~ 416 (458)
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaT-SVgEEGLDIp-~vDlVifYEpvpSeIR~IQR~GRT--------GR~r 470 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVAT-SVGEEGLDIP-EVDLVIFYEPVPSEIRSIQRKGRT--------GRKR 470 (542)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCC-CCCEEEEECCCCHHHHHHHHHCCC--------CCCC
T ss_conf 45455666588899999999865785189981-2322467887-656799956885788999860744--------5577
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5289999858996899999999999999999855
Q gi|255764515|r 417 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 417 ~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
T Consensus 471 ~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~ 504 (542)
T COG1111 471 KGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRG 504 (542)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9749999965862789999999999999999998