HHsearch alignment for GI: 255764515 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=99.83 E-value=2.7e-17 Score=122.98 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHH---CC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 4789999999996---79---8099958899868999999999997599949999160465699999999-855888815
Q gi|255764515|r 4 APHQTKIVDWILD---HK---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQ-RWSNFSHMN 76 (458)
Q Consensus 4 ~p~Q~~~v~~~~~---~~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~-kf~~~~~~~ 76 (458)
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~ 673 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DGKQVAVLVPTTLLAQQHYETFKERFAGF-PVR 673 (1139)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHHHCCC-CEE
T ss_conf 8789999999998860698661025657687599999999999863-79749999260786899899999873389-825
Q ss_pred EEEEEC--CHHHHHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999858--9789888----7307798699806420233442000113220440453100246543115677776654305
Q gi|255764515|r 77 ISVITG--TVKQRTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 77 ~~~~~g--~~~~r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
T Consensus 674 I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~----FkdLGLlIIDEEqRF-------GVk~KEkLK~Lr-~ 741 (1139)
T COG1197 674 IEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK----FKDLGLLIIDEEQRF-------GVKHKEKLKELR-A 741 (1139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCE----EECCCEEEEECHHHC-------CCCHHHHHHHHH-C
T ss_conf 8886055788999999999856984589963176478967----704764897443532-------711789998775-0
Q ss_pred CCEEEEECCCCHHHH
Q ss_conf 980799658402310
Q gi|255764515|r 151 SERFIELTGTPSPNG 165 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~ 165 (458)
T Consensus 742 ~VDvLTLSATPIPRT 756 (1139)
T COG1197 742 NVDVLTLSATPIPRT 756 (1139)
T ss_pred CCCEEEEECCCCCCH
T ss_conf 572897417887544