HHsearch alignment for GI: 255764515 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=99.88 E-value=5.2e-20 Score=139.44 Aligned_cols=309 Identities=17% Similarity=0.258 Sum_probs=175.6
Q ss_pred CCCHHHHHHHHHHHHC---C---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8747899999999967---9---809995889986899999999999759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILDH---K---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~---~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~i 340 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLGI 340 (677)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76789999999998664486666787526767778999999999998728-81688663799999999999987665197
Q ss_pred EEEEEECCH--HHHHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 599985897--89888----730779869980642023344200011322044045310024654311567777665430
Q gi|255764515|r 76 NISVITGTV--KQRTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 76 ~~~~~~g~~--~~r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
T Consensus 341 ~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRF------GV~QR~~L~~KG~~ 410 (677)
T COG1200 341 RVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRF------GVHQRLALREKGEQ 410 (677)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHH----CCEEECCEEEEEEECCCCC------CHHHHHHHHHHCCC
T ss_conf 4898644665067999999874799897997221220----4504420238997252102------29999999973789
Q ss_pred CCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59807996584023100101346775178887753277887773695640330000245555455899999742454332
Q gi|255764515|r 150 ESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSL 229 (458)
Q Consensus 150 ~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (458)
T Consensus 411 -~Ph~LvMTATPIPRTLA----lt~fgDl--------------------------------------------------- 434 (677)
T COG1200 411 -NPHVLVMTATPIPRTLA----LTAFGDL--------------------------------------------------- 434 (677)
T ss_pred -CCCEEEEECCCCHHHHH----HHHHCCC---------------------------------------------------
T ss_conf -99679995798507889----8886146---------------------------------------------------
Q ss_pred HCCCCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 0000100100--11000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 230 DIADYQNIDK--PILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 230 ~~~~~~~l~~--~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
T Consensus 435 dvS~IdElP~GRkpI~T~~i~~-~~~~~v~e~i~~ei~---~GrQaY--------------~VcPLI-e--------eSE 487 (677)
T COG1200 435 DVSIIDELPPGRKPITTVVIPH-ERRPEVYERIREEIA---KGRQAY--------------VVCPLI-E--------ESE 487 (677)
T ss_pred CCHHHCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHHH---CCCEEE--------------EEECCC-C--------CCC
T ss_conf 3011125798997408999644-447999999999997---499799--------------995253-5--------433
Q ss_pred CCC--CHHHHHH----CCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf 333--2566541----2488403422236788866410002653344589987642458855899844221116220017
Q gi|255764515|r 308 KIK--ALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 381 (458)
Q Consensus 308 k~~--~l~~il~----~~~~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a 381 (458)
T Consensus 488 ~l~l~~a~~~~~~L~~~~~~~~v--------------gL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT-TVIEVGVdVPnA 552 (677)
T COG1200 488 KLELQAAEELYEELKSFLPELKV--------------GLVHGRMKPAEKDAVMEAFKEGEIDILVAT-TVIEVGVDVPNA 552 (677)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEE--------------EEEECCCCHHHHHHHHHHHHCCCCCEEEEE-EEEEECCCCCCC
T ss_conf 11365499999999987054636--------------777568986779999999980887689981-389952357887
Q ss_pred CCEEEEECC-CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCC
Q ss_conf 859999089-98986864456666202202037877528999985899
Q gi|255764515|r 382 GNILVFFSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 428 (458)
Q Consensus 382 ~~~iI~~~~-~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~t 428 (458)
T Consensus 553 -TvMVIe~AERFGLaQLHQLRGRV-----GRG~~qSyC--~-Ll~~~~ 591 (677)
T COG1200 553 -TVMVIENAERFGLAQLHQLRGRV-----GRGDLQSYC--V-LLYKPP 591 (677)
T ss_pred -EEEEEECHHHHHHHHHHHHCCCC-----CCCCCCEEE--E-EEECCC
T ss_conf -07999654330378888752655-----788754489--9-996798