HHsearch alignment for GI: 255764515 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.88 E-value=2.6e-21 Score=147.37 Aligned_cols=349 Identities=15% Similarity=0.163 Sum_probs=182.3
Q ss_pred CCCCHHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9874789999999996-----79809995889986899999999999759-99499991604656999999998558888
Q gi|255764515|r 1 MNLAPHQTKIVDWILD-----HKRCAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~-----~~~~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf 36227889999999999866874489997058885231999999999614143056761267899999999996398864
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHC-C-----CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 15999858978988873077986998064202334420-0-----01132204404531002465431156777766543
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQEL-K-----GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~-----~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
T Consensus 244 ~-~n~i~~~------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-------i~~~~~~I~dY- 308 (875)
T COG4096 244 K-MNKIEDK------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-------IYSEWSSILDY- 308 (875)
T ss_pred C-EEEECCC------CCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHH-------HHHHHHHHHHH-
T ss_conf 0-1232014------6786305887603778756406545655678883128996066666-------78766789889-
Q ss_pred HCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05980799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 149 WESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
T Consensus 309 -FdA~~~gLTATP~~~~d~~T~~~F~----g~P-----------------------t~~YsleeAV~DG~L--vpy~vi~ 358 (875)
T COG4096 309 -FDAATQGLTATPKETIDRSTYGFFN----GEP-----------------------TYAYSLEEAVEDGFL--VPYKVIR 358 (875)
T ss_pred -HHHHHHHHCCCCCCCCCCCCCCCCC----CCC-----------------------CEEECHHHHHHCCCC--CCCCCEE
T ss_conf -9998876125762111323101337----970-----------------------224128888521545--7886337
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
T Consensus 359 i~~----~~~~~G~--~~~~~s-erek~~g----~~i~~-dd~~~~~~-----------------d~dr~~v~~~~~~~V 409 (875)
T COG4096 359 IDT----DFDLDGW--KPDAGS-EREKLQG----EAIDE-DDQNFEAR-----------------DFDRTLVIPFRTETV 409 (875)
T ss_pred EEE----ECCCCCC--CCCCCC-HHHHHHC----CCCCC-CCCCCCCC-----------------CCCHHEECCCHHHHH
T ss_conf 664----3156674--767552-3233313----43686-54463335-----------------532000031247899
Q ss_pred CCCHHHHHHC--CC--CCEEEEHHHHHHHHHHHHH----CCCCCC---------CHHHHHHHHHHH-CCCCCCEEEEEHH
Q ss_conf 3325665412--48--8403422236788866410----002653---------344589987642-4588558998442
Q gi|255764515|r 309 IKALEVIIEK--AN--AAPIIVAYHFNSDLARLQK----AFPQGR---------TLDKDPCTIQEW-NEGKIPLLFAHPA 370 (458)
Q Consensus 309 ~~~l~~il~~--~~--~~kviif~~~~~~~~~i~~----~~~~g~---------~~~~r~~~i~~f-~~~~~~vli~s~~ 370 (458)
T Consensus 410 ~r~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 410 ARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEHH
T ss_conf 99999984256688866845899627078999999998748010674599984440656899998874378983587612
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHH--CCCCCC-EEEEEEE
Q ss_conf 21116220017859999089989868644566662022020--378775-2899998
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRA-VFVYYLI 424 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR--~Gq~~~-v~v~~li 424 (458)
T Consensus 490 lL~TGiDvpev~n-lVF~r~V~SktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 490 LLTTGVDVPEVVN-LVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HHHCCCCCHHEEE-EEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHH
T ss_conf 4542787622045-6431444668999998667654370116865663069998721