HHsearch alignment for GI: 255764515 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.54 E-value=5.1e-11 Score=85.00 Aligned_cols=323 Identities=19% Similarity=0.250 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH-HH-CCCCCC
Q ss_conf 87478999999999----6798099958899868999999999997599949999160465699999999-85-588881
Q gi|255764515|r 2 NLAPHQTKIVDWIL----DHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQ-RW-SNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~----~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~-kf-~~~~~~ 75 (458)
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvD---V-clEl~~Rlk~aF~~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVD---V-CLELYPRLKQAFSNC 171 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC-CEEEEECCCCC---C-HHHHHHHHHHHHCCC
T ss_conf 327247899999999987157689997427985101699999999659-86998468610---1-177789999762149
Q ss_pred EEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 59998589789888730779869980642023344200011322044045310024654311567777665430598079
Q gi|255764515|r 76 NISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
T Consensus 172 ~I~~Lyg~S~~~fr----~plvVaTtHQLlr-------Fk~aFD~liIDEVDAF--P~~-~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR----APLVVATTHQLLR-------FKQAFDLLIIDEVDAF--PFS-DDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CEEEEECCCCHHCC----CCEEEEEHHHHHH-------HHHHCCEEEEECCCCC--CCC-CCHHHHHHHHHHHCCCCCEE
T ss_conf 86667258713133----4479976688888-------8864338998302456--566-78889999997512367369
Q ss_pred EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
T Consensus 238 ylTATp~k~l~r~-------~~~g-------------------------------------~----~~~~kl---p~RfH 266 (441)
T COG4098 238 YLTATPTKKLERK-------ILKG-------------------------------------N----LRILKL---PARFH 266 (441)
T ss_pred EEECCCHHHHHHH-------HHHC-------------------------------------C----EEEEEC---CHHHC
T ss_conf 9964880788887-------5407-------------------------------------7----567634---46543
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC-CHHH
Q ss_conf 010011000345245368998889999998510334520223478888754203541000223430001343333-2566
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-ALEV 314 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~-~l~~ 314 (458)
T Consensus 267 ~~pLpvPkf~w~~~~---~k~l-----------------------------------------------~r~kl~~kl~~ 296 (441)
T COG4098 267 GKPLPVPKFVWIGNW---NKKL-----------------------------------------------QRNKLPLKLKR 296 (441)
T ss_pred CCCCCCCCEEEECCH---HHHH-----------------------------------------------HHCCCCHHHHH
T ss_conf 899898742886447---7776-----------------------------------------------64447789999
Q ss_pred HHHC--CCCCEEEEHHHHHHHHHHHHHCCCC----------CCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCC
Q ss_conf 5412--4884034222367888664100026----------533445899876424588558998442211162200178
Q gi|255764515|r 315 IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 382 (458)
Q Consensus 315 il~~--~~~~kviif~~~~~~~~~i~~~~~~----------g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~ 382 (458)
T Consensus 297 ~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-TILERGVTfp~-v 374 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-TILERGVTFPN-V 374 (441)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEE-EHHHCCCCCCC-C
T ss_conf 999987438828999250588999999998618864215653367017899999875863899984-40332664356-2
Q ss_pred CEEEEECCC--CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 599990899--89868644566662022020378775289999858996899999999999999999855413745
Q gi|255764515|r 383 NILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 456 (458)
Q Consensus 383 ~~iI~~~~~--wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~~~~~~ 456 (458)
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvG--Rs~~~P-tGdv--~FF-H~G-~skaM~~A~keIk~MN~l---g~k~~~~ 440 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVG--RSLERP-TGDV--LFF-HYG-KSKAMKQARKEIKEMNKL---GFKRGLI 440 (441)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCC--CCCCCC-CCCE--EEE-ECC-CHHHHHHHHHHHHHHHHH---HHHCCCC
T ss_conf 3999547764201889999752316--787689-8758--999-646-338999999999999887---6442046