HHsearch alignment for GI: 255764515 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.94  E-value=4.8e-23  Score=157.83  Aligned_cols=320  Identities=17%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf             74789999999996798099958899868999-9999999975--------99949999160465699999999855888
Q gi|255764515|r    3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRWSNFS   73 (458)
Q Consensus         3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~   73 (458)
T Consensus       107 PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~  186 (472)
T PRK01297        107 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT  186 (472)
T ss_pred             CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999976998899899986799999999999997177510113689529998799999999999999974627


Q ss_pred             CCEEEEEECCH--HHHHHHHC-CCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             81599985897--89888730-77986998064202334420-0011322044045310024654311567777665430
Q gi|255764515|r   74 HMNISVITGTV--KQRTKVLK-TPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW  149 (458)
Q Consensus        74 ~~~~~~~~g~~--~~r~~~~~-~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~  149 (458)
T Consensus       187 ~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD~LLd~gf~--~~v~~Il~~~p~  264 (472)
T PRK01297        187 GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFI--PQVRQIIRQTPR  264 (472)
T ss_pred             CCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHHHHHCCCCH--HHHHHHHHHCCC
T ss_conf             976999978988799999985589988997979999874348254255229999873121025759--999999996898


Q ss_pred             CC-CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59-80799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r  150 ES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS  228 (458)
Q Consensus       150 ~~-~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (458)
T Consensus       265 ~~~rQ~~lfSATl~-~~v~~--------------------l~~~~~~~p---------------------------~~v~  296 (472)
T PRK01297        265 KEERQTLLFSATFT-DDVMN--------------------LAKQWTTDP---------------------------AIVE  296 (472)
T ss_pred             CCCCEEEEEECCCC-HHHHH--------------------HHHHHCCCC---------------------------EEEE
T ss_conf             55716999852577-89999--------------------999977998---------------------------8999


Q ss_pred             HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf             20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r  229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK  308 (458)
Q Consensus       229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k  308 (458)
T Consensus       297 i~~~~~---~~~~v~-q~~~~-----------------------------------------------------~~~~dk  319 (472)
T PRK01297        297 IEPENV---ASDTVE-QHVYA-----------------------------------------------------VAGSDK  319 (472)
T ss_pred             ECCCCC---CCCCEE-EEEEE-----------------------------------------------------CCHHHH
T ss_conf             657766---777602-89998-----------------------------------------------------188899


Q ss_pred             CCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf             33256654124884034222367888664100----------02653344589987642458855899844221116220
Q gi|255764515|r  309 IKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL  378 (458)
Q Consensus       309 ~~~l~~il~~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL  378 (458)
T Consensus       320 ~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGLDi  398 (472)
T PRK01297        320 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-DVAGRGIHI  398 (472)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCC
T ss_conf             9999999984798736896174999999998765449616864377899999999999976999699886-613366775


Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             01785999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r  379 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK  440 (458)
Q Consensus       379 ~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K  440 (458)
T Consensus       399 ~-~V~~VInyD~P~~~~~YIHRiGRTG-----RaG~~G--~aisfv~~~--d~~~~~~ie~~  450 (472)
T PRK01297        399 D-GISHVINFTLPEDPDDYVHRIGRTG-----RAGASG--VSISFAGED--DAFQLPEIEEL  450 (472)
T ss_pred             C-CCCEEEEECCCCCHHHHHHCCCHHH-----CCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf             7-8888999689897676010265312-----689963--799986388--99999999999