HHsearch alignment for GI: 255764515 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.94 E-value=4.8e-23 Score=157.83 Aligned_cols=320 Identities=17% Similarity=0.264 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 74789999999996798099958899868999-9999999975--------99949999160465699999999855888
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
T Consensus 107 PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~ 186 (472)
T PRK01297 107 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT 186 (472)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999976998899899986799999999999997177510113689529998799999999999999974627
Q ss_pred CCEEEEEECCH--HHHHHHHC-CCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 81599985897--89888730-77986998064202334420-0011322044045310024654311567777665430
Q gi|255764515|r 74 HMNISVITGTV--KQRTKVLK-TPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 74 ~~~~~~~~g~~--~~r~~~~~-~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
T Consensus 187 ~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD~LLd~gf~--~~v~~Il~~~p~ 264 (472)
T PRK01297 187 GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFI--PQVRQIIRQTPR 264 (472)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHHHHHCCCCH--HHHHHHHHHCCC
T ss_conf 976999978988799999985589988997979999874348254255229999873121025759--999999996898
Q ss_pred CC-CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59-80799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 150 ES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 150 ~~-~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
T Consensus 265 ~~~rQ~~lfSATl~-~~v~~--------------------l~~~~~~~p---------------------------~~v~ 296 (472)
T PRK01297 265 KEERQTLLFSATFT-DDVMN--------------------LAKQWTTDP---------------------------AIVE 296 (472)
T ss_pred CCCCEEEEEECCCC-HHHHH--------------------HHHHHCCCC---------------------------EEEE
T ss_conf 55716999852577-89999--------------------999977998---------------------------8999
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
T Consensus 297 i~~~~~---~~~~v~-q~~~~-----------------------------------------------------~~~~dk 319 (472)
T PRK01297 297 IEPENV---ASDTVE-QHVYA-----------------------------------------------------VAGSDK 319 (472)
T ss_pred ECCCCC---CCCCEE-EEEEE-----------------------------------------------------CCHHHH
T ss_conf 657766---777602-89998-----------------------------------------------------188899
Q ss_pred CCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 33256654124884034222367888664100----------02653344589987642458855899844221116220
Q gi|255764515|r 309 IKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 309 ~~~l~~il~~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
T Consensus 320 ~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGLDi 398 (472)
T PRK01297 320 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-DVAGRGIHI 398 (472)
T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCC
T ss_conf 9999999984798736896174999999998765449616864377899999999999976999699886-613366775
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 01785999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 379 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 379 ~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
T Consensus 399 ~-~V~~VInyD~P~~~~~YIHRiGRTG-----RaG~~G--~aisfv~~~--d~~~~~~ie~~ 450 (472)
T PRK01297 399 D-GISHVINFTLPEDPDDYVHRIGRTG-----RAGASG--VSISFAGED--DAFQLPEIEEL 450 (472)
T ss_pred C-CCCEEEEECCCCCHHHHHHCCCHHH-----CCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf 7-8888999689897676010265312-----689963--799986388--99999999999