HHsearch alignment for GI: 255764515 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.95 E-value=5.3e-24 Score=163.62 Aligned_cols=310 Identities=15% Similarity=0.205 Sum_probs=197.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 874789999999996798099958899868999-9999999975--------9994999916046569999999985588
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRWSNF 72 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~ 72 (458)
T Consensus 31 ~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~ 110 (574)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD 110 (574)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 89999999999995799889984898889999999999999837443457789961999779899999999999998645
Q ss_pred CCCEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHH--CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 881599985897--898887307798699806420233442--0001132204404531002465431156777766543
Q gi|255764515|r 73 SHMNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQE--LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 73 ~~~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~--~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
T Consensus 111 ~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD~LLd~gF--~~di~~IL~~lP 188 (574)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGF--IKDIRFLLRRMP 188 (574)
T ss_pred CCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCC--HHHHHHHHHHCC
T ss_conf 897799997996688999987359998998989999999817986533315899627326542877--999999999666
Q ss_pred HC-CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05-98079965840231001013467751788877532778877736956403300002455554558999997424543
Q gi|255764515|r 149 WE-SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 149 ~~-~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (458)
T Consensus 189 ~~~~rQ~iLfSATl-~~~V~~l--------------------a~~~l~~P~---------------------------~i 220 (574)
T PRK04537 189 ERGTRQTLLFSATL-SHRVLEL--------------------AYEHMNEPE---------------------------KL 220 (574)
T ss_pred CCCCCEEEEEEECC-CHHHHHH--------------------HHHHCCCCE---------------------------EE
T ss_conf 55685589998327-7799999--------------------999779986---------------------------99
Q ss_pred HHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 32000010010011000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 228 SLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
T Consensus 221 ~v~~~~---~~~~~-I~Q~~~~-----------------------------------------------------~~~~~ 243 (574)
T PRK04537 221 VVETET---ITAAR-VRQRIYF-----------------------------------------------------PSDEE 243 (574)
T ss_pred EECCCC---CCCCC-EEEEEEE-----------------------------------------------------CCHHH
T ss_conf 965665---45776-0389997-----------------------------------------------------77789
Q ss_pred CCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 33325665412488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 308 KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 308 k~~~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
T Consensus 244 K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaT-DVAARGID 322 (574)
T PRK04537 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-DVAARGLH 322 (574)
T ss_pred HHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCC
T ss_conf 99999999972677651153341899999999999779968997099999999999999976999799773-50023357
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 00178599990899898686445666620220203787752899998589
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
T Consensus 323 Ip~-V~~VINYDlP~~~e~YVHRIGRTG-----RaGr~--G~AITfv~~~ 364 (574)
T PRK04537 323 IDG-VKYVYNYDLPFDAEDYVHRIGRTA-----RLGEE--GDAISFACER 364 (574)
T ss_pred CCC-CCEEEEECCCCCHHHHHCCCCHHH-----CCCCC--EEEEEEECHH
T ss_conf 146-997999579698214112453503-----78993--3599987779