HHsearch alignment for GI: 255764515 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.94 E-value=4.3e-23 Score=158.13 Aligned_cols=309 Identities=16% Similarity=0.185 Sum_probs=193.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCC--------CCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 874789999999996798099958899868999-99999999759--------994999916046569999999985588
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWG--------EKSVLVIAPLRVAQSVWTSEVQRWSNF 72 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~--------~~~~LIv~P~~l~~~~W~~Ei~kf~~~ 72 (458)
T Consensus 31 ~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~ 110 (423)
T PRK04837 31 YCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQA 110 (423)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999996799889989998749999999999999837453345567861899938899999999999997432
Q ss_pred CCCEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 881599985897--8988873077986998064202334420-0011322044045310024654311567777665430
Q gi|255764515|r 73 SHMNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 73 ~~~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
T Consensus 111 ~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD~lld~gF---~~~i~~i~~~~p 187 (423)
T PRK04837 111 TGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGF---IKDIRWLFRRMP 187 (423)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCC---HHHHHHHHHHCC
T ss_conf 58459999899887999998717999899891899999864221236642899634465430263---999999999689
Q ss_pred CCCE--EEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5980--79965840231001013467751788877532778877736956403300002455554558999997424543
Q gi|255764515|r 150 ESER--FIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 150 ~~~~--~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (458)
T Consensus 188 ~~~~r~~~lfSATl-~~~v~~l--------------------a~~~l~~p---------------------------~~i 219 (423)
T PRK04837 188 PANQRLNMLFSATL-SYRVREL--------------------AFEHMNNP---------------------------EYV 219 (423)
T ss_pred CCHHEEEEEEECCC-CHHHHHH--------------------HHHHCCCC---------------------------EEE
T ss_conf 62210899970368-8899999--------------------99977898---------------------------799
Q ss_pred HHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 32000010010011000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 228 SLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
T Consensus 220 ~v--~~~~~~~~~--i~~~~~~-----------------------------------------------------~~~~~ 242 (423)
T PRK04837 220 EV--EPEQKTGHR--IKEELFY-----------------------------------------------------PSNEE 242 (423)
T ss_pred EE--CCCCCCCCC--EEEEEEE-----------------------------------------------------ECHHH
T ss_conf 96--577656654--2699999-----------------------------------------------------17277
Q ss_pred CCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 33325665412488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 308 KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 308 k~~~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
T Consensus 243 K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaT-DvaaRGLD 321 (423)
T PRK04837 243 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVAT-DVAARGLH 321 (423)
T ss_pred HHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCC
T ss_conf 99999999984088746886162888999999997659817872254579999999999976999899870-04327777
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 00178599990899898686445666620220203787752899998589
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
T Consensus 322 i~~-V~~VInyD~P~~~~~YiHRiGRTg-----RaG~~--G~aitf~~~~ 363 (423)
T PRK04837 322 IPD-VTHVFNYDLPDDCEDYVHRIGRTG-----RAGAS--GHSISFACEE 363 (423)
T ss_pred CCC-CCEEEEECCCCCHHHEECCCCHHH-----CCCCC--EEEEEEECHH
T ss_conf 267-988999699897455100465412-----78994--6899987399