HHsearch alignment for GI: 255764515 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=98.41 E-value=2.2e-06 Score=56.95 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCHHHHHHHHHH-HHHHCCCCCCEEEEE
Q ss_conf 789999999996798099958899868999999999997---5999499991604656999999-998558888159998
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHL---WGEKSVLVIAPLRVAQSVWTSE-VQRWSNFSHMNISVI 80 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~---~~~~~~LIv~P~~l~~~~W~~E-i~kf~~~~~~~~~~~ 80 (458)
T Consensus 150 dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaR-L~Esi~~~~~~l~~----- 223 (607)
T PRK10875 150 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAAR-LTESLGKALRQLPL----- 223 (607)
T ss_pred CHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH-HHHHHHHHHHHCCC-----
T ss_conf 189999999875577899679998778899999999999645899708998822899999-99999878753476-----
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCH-------HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 5897898887307798699806420-------233442000113220440453100246543115677776654305980
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENL-------GWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER 153 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~-------~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~ 153 (458)
T Consensus 224 --~~~~~~-~~p~----~a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEASMV------Dl~Lm~~LL~Alp~--~a 288 (607)
T PRK10875 224 --TDEQKK-RIPE----DASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMI------DLPMMSRLIDALPD--HA 288 (607)
T ss_pred --CHHHHH-CCCC----CCEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH------HHHHHHHHHHHCCC--CC
T ss_conf --656663-3765----566589752967898765657799998898999073366------59999999982899--98
Q ss_pred EEEECCCCHH
Q ss_conf 7996584023
Q gi|255764515|r 154 FIELTGTPSP 163 (458)
Q Consensus 154 ~l~LTgTPi~ 163 (458)
T Consensus 289 RLILvGD~dQ 298 (607)
T PRK10875 289 RVIFLGDRDQ 298 (607)
T ss_pred EEEEECCHHH
T ss_conf 8999656232