HHsearch alignment for GI: 255764515 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=99.00 E-value=1.3e-07 Score=64.35 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCHHHH---HHHHH-HHHHHCCCCCCEEEE
Q ss_conf 899999999967980999588998689999999999975999499991--604656---99999-999855888815999
Q gi|255764515|r 6 HQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA--PLRVAQ---SVWTS-EVQRWSNFSHMNISV 79 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~--P~~l~~---~~W~~-Ei~kf~~~~~~~~~~ 79 (458)
T Consensus 78 ~r~~i~~~i~~nqVvii~GeTGsGKTTQiPq~~le~-g~g~-~~~I~~TQPRRiAA~svA~RVA~E~~~-~lG~~VGY~V 154 (1295)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-GRGI-KGLIGHTQPRRLAARTVANRIAEELET-ELGGCVGYKV 154 (1295)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHC-CCCC-CCEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEEE
T ss_conf 999999999979969997689998788999999962-7999-998997796599999999999998199-9899888894
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEE
Q ss_conf 85897898887307798699806420233442000113220440453100246543115677776654305--9807996
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE--SERFIEL 157 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~--~~~~l~L 157 (458)
T Consensus 155 Rf~------~~~s~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHER----sl~~D~LLg~Lk~ll~~R~dLKvIim 224 (1295)
T PRK11131 155 RFN------DQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHER----SLNIDFILGYLKELLPRRPDLKVIIT 224 (1295)
T ss_pred CCC------CCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 569------88799977999765699998620998788777998685568----80199999999999833999889995
Q ss_pred CCCCHHHHCCCHHH
Q ss_conf 58402310010134
Q gi|255764515|r 158 TGTPSPNGLIDLWG 171 (458)
Q Consensus 158 TgTPi~n~~~el~~ 171 (458)
T Consensus 225 SATid~e~fs~yF~ 238 (1295)
T PRK11131 225 SATIDPERFSRHFN 238 (1295)
T ss_pred CCCCCHHHHHHHCC
T ss_conf 58689799996579