HHsearch alignment for GI: 255764515 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.95 E-value=1e-24 Score=168.02 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 874789999999996798099958899868999-9999999975-999499991604656999999998558-8881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSN-FSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~-~~~~~~~ 78 (458)
T Consensus 26 ~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~ 105 (459)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (459)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99989999999997799889988998589999999999841136789859999675999999999999998505882599
Q ss_pred EEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 985897--898887307798699806420233442-00011322044045310024654311567777665430598079
Q gi|255764515|r 79 VITGTV--KQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 79 ~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
T Consensus 106 ~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~mLd~gF---~~~i~~Il~~~p~~rQ~~ 182 (459)
T PRK11776 106 TLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGF---QDAIDAIIRQAPARRQTL 182 (459)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCC---HHHHHHHHHHCCCCCEEE
T ss_conf 99899327999999746999999895899988751663223103899706245432786---688999998688130268
Q ss_pred EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
T Consensus 183 lfSAT~-p~~i--------------------~~l~~~~l~~p---------------------------~~i~v--~~~~ 212 (459)
T PRK11776 183 LFSATY-PEGI--------------------AAISARFQRDP---------------------------VEVKV--ESTH 212 (459)
T ss_pred EEECCC-CHHH--------------------HHHHHHHCCCC---------------------------EEEEE--CCCC
T ss_conf 884568-9899--------------------99999977898---------------------------99996--7877
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf 01001100034524536899888999999851033452022347888875420354100022343000134333325665
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 315 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~i 315 (458)
T Consensus 213 ~~--~~I~q~~~~------------------------------------------------------v~~~~K~~~L~~l 236 (459)
T PRK11776 213 DD--STIEQRFYE------------------------------------------------------VDPDERLPALQRL 236 (459)
T ss_pred CC--CCCEEEEEE------------------------------------------------------ECHHHHHHHHHHH
T ss_conf 79--863799999------------------------------------------------------7718789999999
Q ss_pred HHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEE
Q ss_conf 412488403422236788866410----------0026533445899876424588558998442211162200178599
Q gi|255764515|r 316 IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 385 (458)
Q Consensus 316 l~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~i 385 (458)
T Consensus 237 l~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGIDi~~-V~~V 314 (459)
T PRK11776 237 LLHYRPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-DVAARGLDIKS-LEAV 314 (459)
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCCC-CCEE
T ss_conf 973687660376174899999999998679968998799999999999999977999799881-04347677135-9889
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 990899898686445666620220203787752899998589968999999999
Q gi|255764515|r 386 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 439 (458)
Q Consensus 386 I~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~ 439 (458)
T Consensus 315 InyDlP~~~e~YvHRiGRTG-----RaG~~--G~ait~vt~~--e~~~l~~ie~ 359 (459)
T PRK11776 315 INYELARDPEVHVHRIGRTG-----RAGSK--GLALSLVAPE--EMQRAAAIED 359 (459)
T ss_pred EEECCCCCHHHHHHCCCHHH-----CCCCC--EEEEEEECHH--HHHHHHHHHH
T ss_conf 99789897455202052513-----78996--5799998689--9999999999