HHsearch alignment for GI: 255764515 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.95  E-value=1e-24  Score=168.02  Aligned_cols=318  Identities=18%  Similarity=0.227  Sum_probs=201.6

Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCC-CCCCEEE
Q ss_conf             874789999999996798099958899868999-9999999975-999499991604656999999998558-8881599
Q gi|255764515|r    2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSN-FSHMNIS   78 (458)
Q Consensus         2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~-~~~~~~~   78 (458)
T Consensus        26 ~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~  105 (459)
T PRK11776         26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL  105 (459)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99989999999997799889988998589999999999841136789859999675999999999999998505882599


Q ss_pred             EEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             985897--898887307798699806420233442-00011322044045310024654311567777665430598079
Q gi|255764515|r   79 VITGTV--KQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI  155 (458)
Q Consensus        79 ~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l  155 (458)
T Consensus       106 ~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~mLd~gF---~~~i~~Il~~~p~~rQ~~  182 (459)
T PRK11776        106 TLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGF---QDAIDAIIRQAPARRQTL  182 (459)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCC---HHHHHHHHHHCCCCCEEE
T ss_conf             99899327999999746999999895899988751663223103899706245432786---688999998688130268


Q ss_pred             EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r  156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ  235 (458)
Q Consensus       156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  235 (458)
T Consensus       183 lfSAT~-p~~i--------------------~~l~~~~l~~p---------------------------~~i~v--~~~~  212 (459)
T PRK11776        183 LFSATY-PEGI--------------------AAISARFQRDP---------------------------VEVKV--ESTH  212 (459)
T ss_pred             EEECCC-CHHH--------------------HHHHHHHCCCC---------------------------EEEEE--CCCC
T ss_conf             884568-9899--------------------99999977898---------------------------99996--7877


Q ss_pred             CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf             01001100034524536899888999999851033452022347888875420354100022343000134333325665
Q gi|255764515|r  236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI  315 (458)
Q Consensus       236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~i  315 (458)
T Consensus       213 ~~--~~I~q~~~~------------------------------------------------------v~~~~K~~~L~~l  236 (459)
T PRK11776        213 DD--STIEQRFYE------------------------------------------------------VDPDERLPALQRL  236 (459)
T ss_pred             CC--CCCEEEEEE------------------------------------------------------ECHHHHHHHHHHH
T ss_conf             79--863799999------------------------------------------------------7718789999999


Q ss_pred             HHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEE
Q ss_conf             412488403422236788866410----------0026533445899876424588558998442211162200178599
Q gi|255764515|r  316 IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL  385 (458)
Q Consensus       316 l~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~i  385 (458)
T Consensus       237 l~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGIDi~~-V~~V  314 (459)
T PRK11776        237 LLHYRPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-DVAARGLDIKS-LEAV  314 (459)
T ss_pred             HHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCCC-CCEE
T ss_conf             973687660376174899999999998679968998799999999999999977999799881-04347677135-9889


Q ss_pred             EEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             990899898686445666620220203787752899998589968999999999
Q gi|255764515|r  386 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT  439 (458)
Q Consensus       386 I~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~  439 (458)
T Consensus       315 InyDlP~~~e~YvHRiGRTG-----RaG~~--G~ait~vt~~--e~~~l~~ie~  359 (459)
T PRK11776        315 INYELARDPEVHVHRIGRTG-----RAGSK--GLALSLVAPE--EMQRAAAIED  359 (459)
T ss_pred             EEECCCCCHHHHHHCCCHHH-----CCCCC--EEEEEEECHH--HHHHHHHHHH
T ss_conf             99789897455202052513-----78996--5799998689--9999999999