HHsearch alignment for GI: 255764515 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=98.00 E-value=0.0001 Score=46.85 Aligned_cols=138 Identities=18% Similarity=0.136 Sum_probs=78.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHC----CCC
Q ss_conf 999588998689999999999975999499991604656999999998558888159998-589789888730----779
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI-TGTVKQRTKVLK----TPA 95 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~-~g~~~~r~~~~~----~~~ 95 (458)
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g-~~~~~l~Pei~l~~q~~~~~~~~fg~~~~~~h~~~l-~~~~~~~~w~~~~~g~~ 78 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSALVLVPEIALTPQTLQRFKGRFGSQVAVLHSGKL-SDSEKLDAWRKVKLGEA 78 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCC-CCHHHHHHHHHHHCCCC
T ss_conf 9545678861688899999997337-717897042110167899999971872010100136-73456889999851860
Q ss_pred CEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 869980642023344200011322044045310--024654-31156777766543059807996584023100
Q gi|255764515|r 96 VLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRL-RQGSKTARALAKPAWESERFIELTGTPSPNGL 166 (458)
Q Consensus 96 ~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~-~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~ 166 (458)
T Consensus 79 ~~v~G~rsa~------f~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p~~lgsatP~le~~ 146 (524)
T TIGR00595 79 LVVIGTRSAL------FLPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCPVVLGSATPSLESY 146 (524)
T ss_pred EEEECCCHHH------HCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 0564030343------2462114547873464521001368855206788988764048857880567227899