HHsearch alignment for GI: 255764515 and conserved domain: TIGR00604
>TIGR00604 rad3 DNA repair helicase (rad3); InterPro: IPR013020 All proteins in this family for which functions are known are DNA-DNA helicases that function in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. .
Probab=96.54 E-value=0.013 Score=33.98 Aligned_cols=134 Identities=10% Similarity=0.204 Sum_probs=75.6
Q ss_pred CHHHHHHCCC--CCEEEEHHHHHHHHHHH-----------------------HHCCCCCCCH-HHHHHHHHHHC----CC
Q ss_conf 2566541248--84034222367888664-----------------------1000265334-45899876424----58
Q gi|255764515|r 311 ALEVIIEKAN--AAPIIVAYHFNSDLARL-----------------------QKAFPQGRTL-DKDPCTIQEWN----EG 360 (458)
Q Consensus 311 ~l~~il~~~~--~~kviif~~~~~~~~~i-----------------------~~~~~~g~~~-~~r~~~i~~f~----~~ 360 (458)
T Consensus 598 ~l~~~~~~~Pkk~Giv~FfpSY~yl~~~v~~W~~~gi~~~snesfWek~~~~K~if~E~~D~~~e~~~~~~~Y~~a~~~G 677 (813)
T TIGR00604 598 LLVELSKIIPKKDGIVVFFPSYSYLEQIVSTWKEMGILENSNESFWEKIEKKKLIFVETKDAPQETSDALERYKQAVSEG 677 (813)
T ss_pred HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999971588788789976389999999998753720100046899987487558608888788699999989998618
Q ss_pred CCCEEEEEH-HHCCCCCCCCC-CCCEEEEECCCC-CH---------------------------------------HHHH
Q ss_conf 855899844-22111622001-785999908998-98---------------------------------------6864
Q gi|255764515|r 361 KIPLLFAHP-ASCGHGLNLQY-GGNILVFFSLWW-DL---------------------------------------EEHQ 398 (458)
Q Consensus 361 ~~~vli~s~-~~~~~GlnL~~-a~~~iI~~~~~w-n~---------------------------------------~~~~ 398 (458)
T Consensus 678 rGA~LlsV~gGK~SEGIdF~d~~gRAVi~~GiPYPni~d~~~~~~~~~~a~~~~~~~~~~~~~~~qt~~fy~~~aMR~vn 757 (813)
T TIGR00604 678 RGAVLLSVAGGKVSEGIDFSDDLGRAVIMVGIPYPNIFDEEYTESRVLKARLEFLRDQYQIRENSQTKDFYEFDAMRAVN 757 (813)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87076332044220574454764676899821688875750550187898897753256214567777765558999998
Q ss_pred HHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 45666620220203787752899998589968999999999999999998554137455
Q gi|255764515|r 399 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 457 (458)
Q Consensus 399 Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~~~~~~~ 457 (458)
T Consensus 758 Q~~GRviRh~------~Dyg~~~L~------D~R-Y~r~~~r~kLP~Wi~~~i~~~~~~ 803 (813)
T TIGR00604 758 QAIGRVIRHK------DDYGSIVLL------DKR-YARSDKRKKLPKWIQDTIQSSDLN 803 (813)
T ss_pred HHHHHHHCCC------CCCEEEEEE------ECC-CCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8651342278------741268996------122-163323250138888405366776